BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006956
(624 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis]
gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis]
Length = 630
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/633 (77%), Positives = 535/633 (84%), Gaps = 12/633 (1%)
Query: 1 MEDIEDLL-AGSGGGGAPPGFRLPINAVGVNPK--YNKNKPRLHDNHLSKTGSLSPKIPG 57
MEDIEDLL GGGAPPGFRLP+N+VGV PK KNK L+ LSPKIPG
Sbjct: 1 MEDIEDLLIGSGSGGGAPPGFRLPLNSVGVYPKKIIKKNKGYLNHGISLSQSLLSPKIPG 60
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+TIY+KTFGCSHNQSDSEYMAGQLS+FGYALTD E+ D+WLINTCTVKSPSQSAMDT+
Sbjct: 61 TQTIYIKTFGCSHNQSDSEYMAGQLSSFGYALTDIPEDGDLWLINTCTVKSPSQSAMDTI 120
Query: 118 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
IAK KSAKKPLVVAGCVPQGSR+LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL RK
Sbjct: 121 IAKGKSAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLTRK 180
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRVRTV+ DG
Sbjct: 181 TLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVRTVVGDG 240
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
VKE+WLSSEDTGAYGRDIGVNLP LLNAIV+ELP D STMLRIGMTNPPFILEHLKEIAE
Sbjct: 241 VKEIWLSSEDTGAYGRDIGVNLPRLLNAIVSELPADASTMLRIGMTNPPFILEHLKEIAE 300
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
VLRHPCVYSFLHVPVQSGSD VL+AMNREYT+S+FRTVVDTL ELVPGMQIATDIICGFP
Sbjct: 301 VLRHPCVYSFLHVPVQSGSDNVLNAMNREYTVSNFRTVVDTLTELVPGMQIATDIICGFP 360
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
GETD+DF QTV+LI EYK PQVHISQFYPRPGTPAARMKKVPS +VKKRSRELT+VFEAF
Sbjct: 361 GETDDDFAQTVSLINEYKLPQVHISQFYPRPGTPAARMKKVPSNIVKKRSRELTAVFEAF 420
Query: 418 TPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSV 472
TPY GMEGRVERIWITEIA DGIHL GYVQVLV + MLGTSA+VKITSVGRWSV
Sbjct: 421 TPYNGMEGRVERIWITEIATDGIHLVGHTKGYVQVLVIAPETMLGTSAIVKITSVGRWSV 480
Query: 473 FGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKI 532
FGEVI+ LNQ + +AS ++ S K S CS E+ ACS EP+ ACG E C G+
Sbjct: 481 FGEVIQTLNQTNRGVASAEKMPS---GGKYSPCSDPCETCACSKEPESCACGPESCGGQN 537
Query: 533 TLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL-KGVENDVALGSKKKQEWMGGNMGEW 591
LEE ++ D ED N +N+IGWLLRKRKNQ K VEN++AL S KKQEW G W
Sbjct: 538 PLEESAIAQNDMLLEDRNRRNLIGWLLRKRKNQTQKIVENNIALESIKKQEWTKGTFSMW 597
Query: 592 GVVDRALLGGMLVSFLIILALLIHVGFRTLSTK 624
G VDRALLGGMLVS + I+ALL+H+GFRT STK
Sbjct: 598 GAVDRALLGGMLVSLVTIVALLLHLGFRTTSTK 630
>gi|359493166|ref|XP_002268292.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Vitis vinifera]
Length = 622
Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/630 (75%), Positives = 529/630 (83%), Gaps = 22/630 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIEDLL G+G GGAPPGFRLP+ +VG PK NKNKP L K+ IPGT+T
Sbjct: 1 MEDIEDLLVGNGVGGAPPGFRLPLASVGFKPKQNKNKPNLE----KKSHIQDYIIPGTQT 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYMKTFGCSHNQSDSEYMAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K
Sbjct: 57 IYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITK 116
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 117 GRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 176
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE
Sbjct: 177 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKE 236
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLR
Sbjct: 237 IWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLR 296
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
HPCVYSFLHVPVQSGSDA+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 297 HPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGET 356
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 420
DE+F QTV+LI+EY+FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+FEAFTPY
Sbjct: 357 DEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPY 416
Query: 421 LGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 475
GMEGRVERIWI+EIA DGIHL GY+QVLV + +++GTSA+VKITSVGRWSVFGE
Sbjct: 417 NGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGE 476
Query: 476 VIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLE 535
+I+ LNQV+D I+ N + KCS CS E ACS E +P AC + CEGKI++E
Sbjct: 477 LIETLNQVNDNISLNEE---KFSLGKCSPCSVPGEICACSREAEPCACEPQSCEGKISME 533
Query: 536 EGQVSWIDRFAEDINSQNVIGWLLRKRKNQ-LKGVENDVALGSKKKQEWMGGNMGEWGVV 594
EG VS D E+ QN+ WLLR+RKN K +EN +A GSK+K+E G M WG+V
Sbjct: 534 EGSVSRKDMLPEN---QNLFKWLLRRRKNHGQKRIENGIAWGSKEKEERDRGCMNHWGLV 590
Query: 595 DRALLGGML------VSFLIILALLIHVGF 618
DR LLGG+ S+++ + + V F
Sbjct: 591 DRVLLGGIFGILQRDCSYMLFHYIHLEVSF 620
>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa]
gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa]
Length = 612
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/630 (76%), Positives = 540/630 (85%), Gaps = 24/630 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIEDLL G+G G +PPGFRLP+NAVGVN K NKNKP+LH LS+T +S KIPGT
Sbjct: 1 MEDIEDLLVGNGSG-SPPGFRLPLNAVGVNLKKNKNKPKLHAKQLSET-PISSKIPGT-- 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
QSDSEYMAGQLS+FGY+L+D+ EEAD+WLINTCTVKSPSQSAMDTLI+K
Sbjct: 57 -----------QSDSEYMAGQLSSFGYSLSDSPEEADLWLINTCTVKSPSQSAMDTLISK 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
KSAKKPLVVAGCVPQGSR++KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 106 GKSAKKPLVVAGCVPQGSRNVKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 165
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SL GRV+TVI DGVKE
Sbjct: 166 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTVIDDGVKE 225
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WLSSEDTGAYGRDIGVNLPILLNAIVAELP DGSTMLRIGMTNPPFILEHLKEIAEVLR
Sbjct: 226 IWLSSEDTGAYGRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLKEIAEVLR 285
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
HPCVYSFLHVPVQSGSDA+L+AMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 286 HPCVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDIICGFPGET 345
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 420
D+DF+QTVNLIK YKF QVHISQFYPRPGTPAARMKKVPS +VK+RSRELTSVFEAFTPY
Sbjct: 346 DKDFSQTVNLIKAYKFAQVHISQFYPRPGTPAARMKKVPSNIVKQRSRELTSVFEAFTPY 405
Query: 421 LGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 475
GMEGRVERIWIT+IAADGIHL YVQVL+ + +MLGTSA+VKITSVGRWSVFGE
Sbjct: 406 NGMEGRVERIWITDIAADGIHLVGHTKAYVQVLIVAQESMLGTSAIVKITSVGRWSVFGE 465
Query: 476 VIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLE 535
VI+ LNQ++ K ++ + + ++KCS CS +S ACS E +P ACG E C G+ T+E
Sbjct: 466 VIETLNQINQK---SKSVEKMLSEEKCSPCSDPCDSCACSGESEPCACGPESCGGQSTIE 522
Query: 536 EGQVSWIDRFAEDINSQNVIGWLLRKRKNQL-KGVENDVALGSKKKQEWMGGNMGEWGVV 594
+ V + ED N +N+IGWLLRKRKNQ K VEN +A GS+KKQEW G EWGVV
Sbjct: 523 QSDVLQNEVLREDQNRRNLIGWLLRKRKNQAQKMVENGIASGSQKKQEWAKGAPEEWGVV 582
Query: 595 DRALLGGMLVSFLIILALLIHVGFRTLSTK 624
DRALLGG++VS +A+LIH+GF+T+S+K
Sbjct: 583 DRALLGGLIVSVFTTVAILIHLGFKTMSSK 612
>gi|449447617|ref|XP_004141564.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/637 (72%), Positives = 525/637 (82%), Gaps = 18/637 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
MEDIEDLL G GGG P G+RLPI AVGV PK N K + S S L PK
Sbjct: 1 MEDIEDLLIGGGGGAPP-GYRLPITAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINTCTVKSPSQSAM
Sbjct: 60 IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVRRVRSVI 239
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV+E+WLSSEDTGAYGRDIGVNLPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVNLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDIIC
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIIC 359
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGETDEDF +T+NLIKEY PQVHISQFYPRPGTPAARMKKVPSA+VKKRSRELTSVF
Sbjct: 360 GFPGETDEDFCETINLIKEYNLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSVF 419
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGR 469
EAFTPY GMEGRVERIWITEIAADGIHL GY+QVLV + MLGTSA VKITS+GR
Sbjct: 420 EAFTPYNGMEGRVERIWITEIAADGIHLVGHTKGYIQVLVIAPETMLGTSATVKITSIGR 479
Query: 470 WSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCE 529
WSVFGEVI+I++ K + + + QDK S CS+ +E+ ACS EP+ ACGLE C+
Sbjct: 480 WSVFGEVIEIISTKHHKTTT---LEDTLTQDKVSPCSNTHETCACSTEPESCACGLESCK 536
Query: 530 GKITL-EEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL--KGVENDVALGSKKKQEWMGG 586
G + + +E S E+ +N+I W+LR+RK+ + K E + + +++KQ GG
Sbjct: 537 GAVAVGDEVNSSRNVPSPEEPKRKNLIEWVLRRRKSHVLPKREETENPIVTERKQTLAGG 596
Query: 587 NMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 623
+ EWGVVD+ L+GG+L+S I LL H+G T S+
Sbjct: 597 RLDEWGVVDKILVGGILISTFTIFGLLFHLGSTTFSS 633
>gi|449506818|ref|XP_004162857.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/637 (72%), Positives = 525/637 (82%), Gaps = 18/637 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
MEDIEDLL G GGG P G+RLP+ AVGV PK N K + S S L PK
Sbjct: 1 MEDIEDLLIGGGGGAPP-GYRLPLTAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINTCTVKSPSQSAM
Sbjct: 60 IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTLDSLVRRVRSVI 239
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV+E+WLSSEDTGAYGRDIGV LPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVTLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDIIC
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIIC 359
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGETDEDF +T+NLIKEY PQVHISQFYPRPGTPAARMKKVPSA+VKKRSRELTSVF
Sbjct: 360 GFPGETDEDFCETINLIKEYNLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSVF 419
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGR 469
EAFTPY GMEGRVERIWITEIAADGIHL GY+QVLV ++ MLGTSA VKITS+GR
Sbjct: 420 EAFTPYNGMEGRVERIWITEIAADGIHLVGHTKGYIQVLVIASETMLGTSATVKITSIGR 479
Query: 470 WSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCE 529
WSVFGEVIKI++ K + + + QDK S CS+ +E+ ACS EP+ ACGLE C+
Sbjct: 480 WSVFGEVIKIISTKHHKTTT---LEDTLTQDKVSPCSNTHETCACSTEPESCACGLESCK 536
Query: 530 GKITL-EEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL--KGVENDVALGSKKKQEWMGG 586
G + + ++ S E+ +N+I W+LR+RK+ + K E + + +++KQ GG
Sbjct: 537 GAVAVGDKVNSSRNIPSPEEPKRKNLIEWVLRRRKSHVLPKREETENPIVTERKQTLAGG 596
Query: 587 NMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 623
+ EWGVVD+ L+GG+L+S I LL H+G T S+
Sbjct: 597 RLDEWGVVDKILVGGILISTFTIFGLLFHLGSTTFSS 633
>gi|356542899|ref|XP_003539902.1| PREDICTED: CDKAL1-like protein-like [Glycine max]
Length = 609
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/627 (71%), Positives = 518/627 (82%), Gaps = 27/627 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINA-VGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTE 59
MEDIEDLL GS PPGFRLP+ A VGV K N+ S + S SP IPGT+
Sbjct: 1 MEDIEDLLIGSA---TPPGFRLPLAAAVGVGTKRNQLS--------SSSLSPSPAIPGTQ 49
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGCSHNQSDSEYMAGQLSAFGY+L+D+ + AD+WLINTCTVKSPSQSAMDT+I+
Sbjct: 50 TIFIKTFGCSHNQSDSEYMAGQLSAFGYSLSDDPDHADLWLINTCTVKSPSQSAMDTIIS 109
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K KS+ KPLVVAGCVPQGSRDLKELEG+SIVGVQQIDRVVE+VEETLKGHEVRLL RKKL
Sbjct: 110 KGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKL 169
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
PALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRV++VI++GVK
Sbjct: 170 PALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISEGVK 229
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIGVNLP LLNA+VAELP D STMLRIGMTNPP+ILEHLKEIAE+L
Sbjct: 230 EIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLKEIAEIL 289
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
RHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIATDIICGFPGE
Sbjct: 290 RHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGE 349
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
TDEDF QT+NLIKEYK PQVHISQFYPRPGTPAARMKKVPS VVK+RSRELT+VFE+FTP
Sbjct: 350 TDEDFLQTINLIKEYKLPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTP 409
Query: 420 YLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 474
Y GMEG+VERIWIT+IA+DG+HL GY+QVLV + NMLGTSA+VKITSVGRWSVFG
Sbjct: 410 YSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVLAPDNMLGTSAMVKITSVGRWSVFG 469
Query: 475 EVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITL 534
+VI+ +N V D A N+ + +Q C + ++ S EP+ ACG + C G+ TL
Sbjct: 470 DVIETVNPVSDNKALNKLVPNQ-------DCGNSAKTGGFSEEPEYCACGNDICCGQGTL 522
Query: 535 EEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNMGEWGVV 594
E S ++ + +N IGW+LRKR++ K VE+++A GS KKQE G M +W V
Sbjct: 523 ENNDNSRGSAVPQNQSKRNFIGWMLRKREHLHKTVESELASGSVKKQE---GIMRKWDFV 579
Query: 595 DRALLGGMLVSFLIILALLIHVGFRTL 621
D+ LLGG+ +S L I+AL++ V FR +
Sbjct: 580 DKVLLGGISISILTIMALVVAVMFRVI 606
>gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/553 (75%), Positives = 471/553 (85%), Gaps = 18/553 (3%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K +S+KKPLVVAGCVPQG
Sbjct: 1 MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKPLVVAGCVPQG 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LPALDLPKVR+NKFVEILP
Sbjct: 61 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPKVRKNKFVEILP 120
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
INVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE+WLSSEDTGAYGRDIGV
Sbjct: 121 INVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKEIWLSSEDTGAYGRDIGV 180
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLRHPCVYSFLHVPVQSGSD
Sbjct: 181 TLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLRHPCVYSFLHVPVQSGSD 240
Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
A+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGETDE+F QTV+LI+EY+FP
Sbjct: 241 AILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFP 300
Query: 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAA 437
QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+FEAFTPY GMEGRVERIWI+EIA
Sbjct: 301 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPYNGMEGRVERIWISEIAT 360
Query: 438 DGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRR 492
DGIHL GY+QVLV + +++GTSA+VKITSVGRWSVFGE+I+ LNQV+D I+ N
Sbjct: 361 DGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGELIETLNQVNDNISLN-- 418
Query: 493 ISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQ 552
+ KCS CS E ACS E +P AC + CEGKI++EEG VS D E+ Q
Sbjct: 419 -EEKFSLGKCSPCSVPGEICACSREAEPCACEPQSCEGKISMEEGSVSRKDMLPEN---Q 474
Query: 553 NVIGWLLRKRKNQ-LKGVENDVALGSKKKQEWMGGNMGEWGVVDRALLGGML------VS 605
N+ WLLR+RKN K +EN +A GSK+K+E G M WG+VDR LLGG+ S
Sbjct: 475 NLFKWLLRRRKNHGQKRIENGIAWGSKEKEERDRGCMNHWGLVDRVLLGGIFGILQRDCS 534
Query: 606 FLIILALLIHVGF 618
+++ + + V F
Sbjct: 535 YMLFHYIHLEVSF 547
>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 602
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/640 (68%), Positives = 494/640 (77%), Gaps = 60/640 (9%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
MEDIEDLLAG GG P GFRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RVSSKQDQITASNRDSLAPPSL 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KIPGT+TIY+KTFGCSHNQSDSEYMAGQL+AFGYALT+ E+AD+WLINTCTVKSPSQSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSA 118
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETDEDF+QTV LIK+YKF QVHISQFYPRPGTPAA+MKKV S +VK+RSR+LTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFSQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRDLTSV 418
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
FEAF PY GMEGR ERIWITEIA DGIHL GYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMEGREERIWITEIATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 469 RWSVFGEVIKILNQVDDKIASNRRISSQVR-QDKCSSCSSQNESSACSNEPDPSACGLEC 527
RWSVFGEVI+ + ++NR S+ + CSS S E+ CS E +CG E
Sbjct: 479 RWSVFGEVIETFS------SANRETKSREETKPPCSSNVSSCETCTCSAE----SCGEE- 527
Query: 528 CEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWM--- 584
R E N I R++ KG S+K++ M
Sbjct: 528 ----------------RSGEACNISGNIS-----RQDDQKG-------KSEKQETEMREV 559
Query: 585 ---GGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 621
G ++ WG +D+AL+ G+ VS L IL LLI + R L
Sbjct: 560 VVPGSSVANWGFIDKALVCGVFVSSLTILVLLISIASRVL 599
>gi|18409989|ref|NP_565035.1| Methylthiotransferase [Arabidopsis thaliana]
gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana]
gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana]
Length = 601
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/635 (69%), Positives = 491/635 (77%), Gaps = 50/635 (7%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN----HLSKTGSLSP--- 53
MEDIEDLLAG GG P GFRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+ EEAD+WLINTCTVKSPSQSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPGTPAA+MKKV S +VK+RSRELTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSV 418
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
FEAF PY GME R ERIWITE+A DGIHL GYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMECREERIWITEVATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 469 RWSVFGEVIKILNQVDDKIASNRRISSQVRQD-KCSSCSSQNESSACSNEPDPSACGLEC 527
RWSVFGEVI+ + ++NR S+ CSS S E+ CS E +CG E
Sbjct: 479 RWSVFGEVIETFS------SANRETKSREETKLPCSSNVSTCETCTCSAE----SCGEE- 527
Query: 528 CEGKITLEEGQVSWIDRFAEDIN-SQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGG 586
R E N S N+ G ++ KG ++ G
Sbjct: 528 ----------------RSGEACNISGNISG------QDDNKGKSKKEEKEVQEVVV-PGS 564
Query: 587 NMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 621
++ WG +D+AL+ G+ VS + IL LLI + R L
Sbjct: 565 SVANWGFIDKALVCGVFVSSVTILVLLISIACRVL 599
>gi|357111240|ref|XP_003557422.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Brachypodium distachyon]
Length = 624
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/650 (64%), Positives = 483/650 (74%), Gaps = 59/650 (9%)
Query: 1 MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
MEDIED+L AG GGGAPPG RLP++ V V PK + RL +IPGT
Sbjct: 1 MEDIEDVLGPAGFSGGGAPPGLRLPLSTVAVKPK--RRSSRLAQTQQQPEA----RIPGT 54
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM TLI
Sbjct: 55 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 114
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+KCK+A KPLVVAGCVPQGSRDLKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL RK
Sbjct: 115 SKCKNANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLLSRKT 174
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSY+++ LV RV+ V+++GV
Sbjct: 175 LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYSIDGLVDRVKIVVSEGV 234
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+WLSSEDTGAYGRDIG NLP LL+AIVAELP D STMLRIGMTNPPFILEHL EIA V
Sbjct: 235 REIWLSSEDTGAYGRDIGTNLPNLLSAIVAELPADRSTMLRIGMTNPPFILEHLNEIASV 294
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
LRHPCVY+FLHVPVQSGSDAVL AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPG
Sbjct: 295 LRHPCVYTFLHVPVQSGSDAVLKAMNREYTVSEFRMVVDTLCELVPGMQIATDIICGFPG 354
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
ETDEDF QTV LIKEYK PQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVFEAF+
Sbjct: 355 ETDEDFAQTVKLIKEYKLPQVHISQFYPRPGTPAARMKKVPSIEVKKRSRELTSVFEAFS 414
Query: 419 PYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVF 473
PY G+EG+VERIWITEIA DG+HL GY+QVLV + +MLGTSA VKITSVGRWSVF
Sbjct: 415 PYQGLEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSANVKITSVGRWSVF 474
Query: 474 GEVI-------KILNQ----VDDKIASNRRISSQVRQDKCSSCS---SQNESSAC----S 515
GEVI ++L Q ++ N + + C SC+ ++N + C S
Sbjct: 475 GEVIEGSIAAKEVLKQNPAEAQEEYRENHAEEATCSTNSCGSCACSGAENVAQQCGPHRS 534
Query: 516 NEPD--PSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDV 573
+P P+ CG CE E Q + + R E +K E+D
Sbjct: 535 EDPSDAPTDCGDATCE-----EAAQYTLVRRNVE----------------RTMKTRESDT 573
Query: 574 ALGSKKKQEWMGGNMGEWGV--VDRALLGGMLVSFLIILALLIHVGFRTL 621
K Q+ N+ V +DR L G+ VSF LAL + + ++
Sbjct: 574 GKPVVKDQQV---NLANRRVINIDRILWVGLAVSFATTLALFVLLSYKIF 620
>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
Length = 623
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/643 (65%), Positives = 489/643 (76%), Gaps = 43/643 (6%)
Query: 1 MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L A GGGAPPG RLP+ AV V PK S+ P +
Sbjct: 1 MEDIEDVLGPADLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAR 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDI NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDISTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+++FR VVDTL ELVPGMQIATDIIC
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVAEFRKVVDTLYELVPGMQIATDIIC 350
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVF
Sbjct: 351 GFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSVF 410
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGR 469
E F+PY GMEG+VERIWITEIA DG+HL GY+QVLV + ++LGTSA VKITSVGR
Sbjct: 411 ELFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSLLGTSANVKITSVGR 470
Query: 470 WSVFGEVIK---ILNQVDDKIAS---NRRISSQVRQDKCSSCSSQNESSACSNEPDPSAC 523
WSVFGEVI+ ++ + + ++ I +QV + C + S + ACSNE C
Sbjct: 471 WSVFGEVIEGSVVVGEAPKQTSAKLQKEHIQNQVEEAGCCATDSCG-TCACSNEAQ--QC 527
Query: 524 GLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKR--KNQLKGVENDVALGSKKKQ 581
E CE S D+ Q + L +R + KG ++ A K+Q
Sbjct: 528 SPERCE--------DTSHAPETCGDVTRQEALQPTLVRRSVEGTTKGSKSSAAHSLGKEQ 579
Query: 582 EWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 623
+ + GV +D L G+ VSF + +ALL+ + + ST
Sbjct: 580 QVK--VVTRRGVNIDTILWCGLAVSFAVTIALLVILTSKISST 620
>gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group]
Length = 626
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/648 (64%), Positives = 479/648 (73%), Gaps = 52/648 (8%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 113
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 114 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 173
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 174 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 233
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 234 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 293
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIIC
Sbjct: 294 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIIC 353
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVF
Sbjct: 354 GFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVF 413
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGR 469
E+F+PY GMEG+VERIWITEIA DG+HL GY+QVLV + +MLGTSA VKITSVGR
Sbjct: 414 ESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGR 473
Query: 470 WSVFGEVI------KILNQVDDKIASNRRISSQVRQ------DKCSSCSSQNESSACSNE 517
WSVFGEVI K + + SQV + D C +C+ + + C+
Sbjct: 474 WSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNPG 533
Query: 518 PDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGS 577
P+ S G T +E S + R R + +K E+D A
Sbjct: 534 PERSENSTPQSCGDATHQEAVQSKLVR---------------RNVEGAVKSSESDTA--- 575
Query: 578 KKKQEWMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 623
K+ E N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 576 KQVGEIQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 623
>gi|194693708|gb|ACF80938.1| unknown [Zea mays]
gi|413918351|gb|AFW58283.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 626
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/643 (64%), Positives = 486/643 (75%), Gaps = 40/643 (6%)
Query: 1 MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
MEDIED+L +G G PPG RLP+ AV V PK S+ P+
Sbjct: 1 MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDIIC
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDIIC 350
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVF
Sbjct: 351 GFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSVF 410
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGR 469
E+F+PY GMEG+VE+IWITEIA+DG+HL GY+QVLV + +MLGTSA KITSVGR
Sbjct: 411 ESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVGR 470
Query: 470 WSVFGEVIK-ILNQVDDKIASN-----RRISSQVRQDKCSSCSSQNESSACSNEPDPSAC 523
WSVFG V++ + ++ I ++ + +QV + C + S + ACSNE P C
Sbjct: 471 WSVFGVVVEGSVAVIEAPIQTSAELQEEHVQNQVEEAGCCATDSCG-ACACSNEAQP--C 527
Query: 524 GLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRK--NQLKGVENDVALGSKKKQ 581
G + C L Q D Q + L +R KG ++ A + K+Q
Sbjct: 528 GPDRCGD--ALRAPQTCGGDVVT---TRQEALQPTLVRRSVDGTTKGSDSTAAHSAGKEQ 582
Query: 582 EWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 623
+ GV +D L G+ SF + +ALL + + LST
Sbjct: 583 RVE--VVTRRGVDIDTVLWCGLAASFAVTVALLALLTSKILST 623
>gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group]
gi|113564411|dbj|BAF14754.1| Os04g0434300, partial [Oryza sativa Japonica Group]
Length = 621
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/627 (64%), Positives = 468/627 (74%), Gaps = 50/627 (7%)
Query: 20 FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----KIPGTETIYMKTFGCSHNQSDS 75
RLP+ AV V PK +PR S+ P +IPGT+TIY+KTFGCSHNQSDS
Sbjct: 19 LRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEARIPGTQTIYVKTFGCSHNQSDS 69
Query: 76 EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVP 135
EYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM TLI+KCKSA KPLVVAGCVP
Sbjct: 70 EYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAGCVP 129
Query: 136 QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEI 195
QGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL RK LP+LDLPKVR+NKF+EI
Sbjct: 130 QGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPKVRKNKFIEI 189
Query: 196 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
LPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+++GV+E+WLSSEDTGAYGRDI
Sbjct: 190 LPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDI 249
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
G NLP LLN I AELP D STMLRIGMTNPPFILEHLKEIA VL HPCVYSFLHVPVQSG
Sbjct: 250 GTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSG 309
Query: 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375
SDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPGETDEDF+QTVNL+K+Y
Sbjct: 310 SDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYL 369
Query: 376 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEI 435
FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVFE+F+PY GMEG+VERIWITEI
Sbjct: 370 FPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGKVERIWITEI 429
Query: 436 AADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI------KILNQVD 484
A DG+HL GY+QVLV + +MLGTSA VKITSVGRWSVFGEVI K + +
Sbjct: 430 ATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVIEGSVVAKETQKHN 489
Query: 485 DKIASNRRISSQVRQ------DKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQ 538
SQV + D C +C+ + + C+ P+ S G T +E
Sbjct: 490 HSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNPGPERSENSTPQSCGDATHQEAV 549
Query: 539 VSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNMG--EWGVVDR 596
S + R R + +K E+D A K+ E N+ + VD
Sbjct: 550 QSKLVR---------------RNVEGAVKSSESDTA---KQVGEIQRLNVAARRFPDVDT 591
Query: 597 ALLGGMLVSFLIILALLIHVGFRTLST 623
L GG+ VSF + L+ + ++ ST
Sbjct: 592 ILWGGLAVSFATTVTLIALLAYKISST 618
>gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group]
Length = 629
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/643 (64%), Positives = 484/643 (75%), Gaps = 39/643 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV + PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVALKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQ---SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
IPGT+TIY+KTFGCSHNQ SDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQ
Sbjct: 54 IPGTQTIYVKTFGCSHNQASFSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQ 113
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
SAM TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEV
Sbjct: 114 SAMTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEV 173
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
RLL RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+
Sbjct: 174 RLLSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVK 233
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
V+++GV+E+WLSSEDTGAYGRDIG NLP LLN IVAELP D STMLRIGMTNPPFILEH
Sbjct: 234 IVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIVAELPADRSTMLRIGMTNPPFILEH 293
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
LKEIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATD
Sbjct: 294 LKEIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATD 353
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
IICGFPGETDEDF+QTVNL+K+Y+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELT
Sbjct: 354 IICGFPGETDEDFSQTVNLVKQYQFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELT 413
Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITS 466
SVFE+F+PY GMEG+VERIWITEIA DG+HL GY+QVLV + +MLGTSA VKITS
Sbjct: 414 SVFESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITS 473
Query: 467 VGRWSVFGEVIK---ILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSAC 523
VGRWSVFGEVI+ + + S + + Q + ++C + AC+ S
Sbjct: 474 VGRWSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSFGACTC----SDA 529
Query: 524 GLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKR-KNQLKGVENDVALGSKKKQE 582
+C G E + S + + + V L+R+ + +K E+D A K+ E
Sbjct: 530 AQQCNPGP---ERSENSTPQSCGDATHQEAVQSKLVRRNVEGAVKSSESDTA---KQVGE 583
Query: 583 WMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 623
N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 584 IQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 626
>gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group]
Length = 613
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/648 (62%), Positives = 466/648 (71%), Gaps = 65/648 (10%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT QSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 221 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 280
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIIC
Sbjct: 281 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIIC 340
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVF
Sbjct: 341 GFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVF 400
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGR 469
E+F+PY GMEG+VERIWITEIA DG+HL GY+QVLV + +MLGTSA VKITSVGR
Sbjct: 401 ESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGR 460
Query: 470 WSVFGEVI------KILNQVDDKIASNRRISSQVRQ------DKCSSCSSQNESSACSNE 517
WSVFGEVI K + + SQV + D C +C+ + + C+
Sbjct: 461 WSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNPG 520
Query: 518 PDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGS 577
P+ S G T +E S + R R + +K E+D A
Sbjct: 521 PERSENSTPQSCGDATHQEAVQSKLVR---------------RNVEGAVKSSESDTA--- 562
Query: 578 KKKQEWMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 623
K+ E N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 563 KQVGEIQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 610
>gi|356523570|ref|XP_003530410.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Glycine max]
Length = 518
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/517 (70%), Positives = 425/517 (82%), Gaps = 19/517 (3%)
Query: 110 SQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH 169
+QSAMDT+I K KS+ KPLVVAGCVPQGSRDLKEL+G+SIVGVQQI RVVE+VEETLKGH
Sbjct: 13 AQSAMDTIITKGKSSNKPLVVAGCVPQGSRDLKELQGISIVGVQQIHRVVEIVEETLKGH 72
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
EVRLL RKKLP LDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLV R
Sbjct: 73 EVRLLTRKKLPTLDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVRR 132
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
V++VI++GV E+WLSSEDTGA GRDIGVN P LLNA+VAELP D STMLRIGMTNPP+IL
Sbjct: 133 VKSVISEGVXEIWLSSEDTGASGRDIGVNPPTLLNALVAELPADASTMLRIGMTNPPYIL 192
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
EHLK IAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIA
Sbjct: 193 EHLKXIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIA 252
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
TDIIC FPGETDEDF QTVNLI+EYKFPQVHISQFYPRPGTPAARMKKVPS VVK+RSRE
Sbjct: 253 TDIICRFPGETDEDFVQTVNLIEEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRE 312
Query: 410 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKI 464
LT VFE+FTPY GMEG+VERIWIT+IA+DG+HL GY+QVLV + NMLGTSA+VKI
Sbjct: 313 LTXVFESFTPYSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVLAPDNMLGTSAVVKI 372
Query: 465 TSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACG 524
TSVGRWSVFGE+ + +N D A N+ + +Q C S + ES AC N+
Sbjct: 373 TSVGRWSVFGEIFETINHASDNKALNKLVPNQDLSSLCGGFSEEQESCACGNDI------ 426
Query: 525 LECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWM 584
CC + TLE+ S R +++ + +N IGW+LRKR + K VE+++A GS KKQE
Sbjct: 427 --CCGQEGTLEKSDNS---RGSQNQSKRNFIGWMLRKRGHLHKTVESELASGSVKKQE-- 479
Query: 585 GGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 621
G+M +W +VD+ LLGG+ +S L I+AL++ V FR +
Sbjct: 480 -GSMRKWDLVDKVLLGGISISILTIMALVVAVMFRVI 515
>gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 489
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/496 (66%), Positives = 393/496 (79%), Gaps = 25/496 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLP-------------INAVGVNPKYNKNKPRLHDNHLSK 47
MEDIED++ GG AP G LP NAV + P+ R+ + K
Sbjct: 1 MEDIEDMIGDFGG--APLGLHLPKTDSTSGSGRRNGTNAVTIKPRR-----RISAHSGGK 53
Query: 48 TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVK 107
S + +T+Y+KTFGCSHNQSDSEYMAGQLS +GY++TD + AD+WLINTCTVK
Sbjct: 54 ESIDSVVLVAMQTVYLKTFGCSHNQSDSEYMAGQLSDYGYSVTDAPDGADLWLINTCTVK 113
Query: 108 SPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 167
+PSQSAM+ LI K K A KPLVVAGCVPQG ++LK+LEGVS+VGVQQIDRVVEVVEETLK
Sbjct: 114 NPSQSAMENLIRKGKDAGKPLVVAGCVPQGDKNLKDLEGVSVVGVQQIDRVVEVVEETLK 173
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
GHEVRLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSY + SLV
Sbjct: 174 GHEVRLLRRSSLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGHLGSYPLASLV 233
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
RV+ V+A+GVKE+WLSSEDTGAYG D+G +LP LLNA+V LP D S MLRIGMTNPP+
Sbjct: 234 DRVKGVVAEGVKEIWLSSEDTGAYGIDLGTDLPTLLNALVDVLPKDRSCMLRIGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL+HL+ IA +L HPCVYSFLHVPVQSGSD VL AMNREYT+SDF+ V DTL+ LVP +
Sbjct: 294 ILKHLESIAAILNHPCVYSFLHVPVQSGSDNVLCAMNREYTVSDFKKVADTLLRLVPDLH 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
+ATDIICGFPGET EDF T+ L+KEYKF Q+HISQFYPRPGTPAARMK+VP+A VKKRS
Sbjct: 354 LATDIICGFPGETSEDFEATMALVKEYKFSQLHISQFYPRPGTPAARMKRVPTAEVKKRS 413
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
RELT++FE+F PY GMEG+ +R+W+T++A+DG+HL YVQVL+P ++G+S V
Sbjct: 414 RELTTLFESFNPYSGMEGKEQRVWVTDVASDGVHLVGHNKSYVQVLLPEAEGLMGSSVDV 473
Query: 463 KITSVGRWSVFGEVIK 478
KI SV RWSV GEV+K
Sbjct: 474 KIISVNRWSVMGEVLK 489
>gi|223944159|gb|ACN26163.1| unknown [Zea mays]
gi|413918349|gb|AFW58281.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 517
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/524 (65%), Positives = 402/524 (76%), Gaps = 24/524 (4%)
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 1 MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 60
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 61 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 120
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 121 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 180
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDII
Sbjct: 181 EIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDII 240
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 241 CGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSV 300
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
FE+F+PY GMEG+VE+IWITEIA+DG+HL GY+QVLV + +MLGTSA KITSVG
Sbjct: 301 FESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVG 360
Query: 469 RWSVFGEVIK-ILNQVDDKIASN-----RRISSQVRQDKCSSCSSQNESSACSNEPDPSA 522
RWSVFG V++ + ++ I ++ + +QV + C + S + ACSNE P
Sbjct: 361 RWSVFGVVVEGSVAVIEAPIQTSAELQEEHVQNQVEEAGCCATDSCG-ACACSNEAQP-- 417
Query: 523 CGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRK--NQLKGVENDVALGSKKK 580
CG + C L Q D Q + L +R KG ++ A + K+
Sbjct: 418 CGPDRCGD--ALRAPQTCGGDVVT---TRQEALQPTLVRRSVDGTTKGSDSTAAHSAGKE 472
Query: 581 QEWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 623
Q + GV +D L G+ SF + +ALL + + LST
Sbjct: 473 QRVE--VVTRRGVDIDTVLWCGLAASFAVTVALLALLTSKILST 514
>gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
Length = 421
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/421 (73%), Positives = 370/421 (87%), Gaps = 5/421 (1%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINTCTVK+PSQSAM+TLI
Sbjct: 1 TIFLKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R L
Sbjct: 61 KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIG ++P LL A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGSDIPTLLRALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
RHPCVYSFLHVPVQSGSD+VL AM REYT+++F+ V DTLIELVP + IATDIICGFPGE
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLEAMKREYTVAEFKQVADTLIELVPDIHIATDIICGFPGE 300
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
T ++F++T+ LI+ YKFPQVHISQFYPRPGTPAARMK+VP+A VKKRSR LTS+FE+FTP
Sbjct: 301 TSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARMKRVPTAEVKKRSRLLTSLFESFTP 360
Query: 420 YLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 474
Y MEG+V R+W+T+ AADGIHL YVQVL+PS +LG++ KITSVGRWSV
Sbjct: 361 YSDMEGKVYRVWVTDTAADGIHLVGHTKSYVQVLLPSLPGLLGSNVNCKITSVGRWSVKA 420
Query: 475 E 475
E
Sbjct: 421 E 421
>gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
Length = 421
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/421 (73%), Positives = 372/421 (88%), Gaps = 5/421 (1%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINTCTVK+PSQSAM+TLI
Sbjct: 1 TIFVKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R L
Sbjct: 61 KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIG ++P LL+A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGTDIPTLLHALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
RHPCVYSFLHVPVQSGSD+VL+AM REYT+++F+ V DTLIELVP + IATDIICGFPGE
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLAAMKREYTVAEFKQVADTLIELVPDIHIATDIICGFPGE 300
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
T ++F++T+ LI+ YKFPQVHISQFYPRPGTPAARMK+VP+A VKKRSR LT++FE+FTP
Sbjct: 301 TSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARMKRVPTAEVKKRSRLLTNLFESFTP 360
Query: 420 YLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 474
Y MEG+V R+W+T+ AADGIHL YVQVL+PS +LG++ KITSVGRWSV
Sbjct: 361 YSDMEGKVYRVWVTDTAADGIHLVGHTKSYVQVLLPSLPGLLGSNVNCKITSVGRWSVKA 420
Query: 475 E 475
E
Sbjct: 421 E 421
>gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 516
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/442 (60%), Positives = 342/442 (77%), Gaps = 10/442 (2%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PGT I++ TFGCSHN SDSE+MAGQL +GY L D E+AD WL+NTCTVK+PSQSAM+
Sbjct: 35 PGTAKIFVHTFGCSHNHSDSEFMAGQLRRYGYELVDAPEKADGWLVNTCTVKNPSQSAMN 94
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
T+I + K+A K +V+AGCVPQG + KEL VS++GV QIDRVVE +E TL G VR+L
Sbjct: 95 TVIERGKAANKAMVIAGCVPQGDKGAKELRDVSLLGVTQIDRVVEAMERTLAGDTVRMLE 154
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+K LP+LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV +A
Sbjct: 155 KKALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAMA 214
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+GV EVWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL +
Sbjct: 215 EGVSEVWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAV 274
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
AE +RHP VY+++H+PVQSGS+AVL M REYT+ +F+ V DTL+ VPGM IATDIICG
Sbjct: 275 AEAMRHPSVYAWMHIPVQSGSNAVLEGMKREYTVEEFKRVCDTLLAAVPGMVIATDIICG 334
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FPGETDE + +T++LI+EYKFP+VHISQFYPRPGTPAA+MK+VP+ +VK RSRELT++FE
Sbjct: 335 FPGETDEQWQETMSLIEEYKFPEVHISQFYPRPGTPAAKMKRVPTQIVKARSRELTALFE 394
Query: 416 AFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVP----STGNMLGTSALVKITS 466
++ P+ + G+ ER+W+++IA DG L Y Q+L+P ++G SA+V+I
Sbjct: 395 SYMPHEHLVGKTERVWVSDIARDGTSLVAHTKNYTQILLPGGEDQRARLMGRSAMVEIYE 454
Query: 467 VGRWSVFGEVIKILNQVDDKIA 488
RWS V+++L +VD +A
Sbjct: 455 AARWSCKARVLEVL-EVDPTVA 475
>gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
Length = 558
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/493 (54%), Positives = 359/493 (72%), Gaps = 36/493 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++ TFGCSHN SDSE+MAGQL ++GY L ++ +AD WL+NTCTVK+PSQSAM+T++ +
Sbjct: 35 IFVHTFGCSHNHSDSEFMAGQLQSYGYELVKDASDADGWLVNTCTVKNPSQSAMNTVLER 94
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+A K L+VAGCVPQG + KEL+ VS++GV QIDRVVE +E TL G VR+L +K LP
Sbjct: 95 GKAANKALLVAGCVPQGDKGAKELKDVSLLGVTQIDRVVEAMERTLAGDTVRMLEKKTLP 154
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV I++GV E
Sbjct: 155 RLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAISEGVSE 214
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
VWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL +AE +R
Sbjct: 215 VWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAVAEAMR 274
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
HP VY+++H+PVQSGS+AVL AM REYT+ +FRTV DTL+E VPGM IATD+ICGFPGET
Sbjct: 275 HPAVYAWMHIPVQSGSNAVLEAMKREYTVEEFRTVCDTLLEAVPGMVIATDVICGFPGET 334
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 420
DE + +T+ LI+EYKFP+VHISQFYPRPGTPAARMK+VP+ +VK RSRELT +FE++ P+
Sbjct: 335 DEQWRETMQLIEEYKFPEVHISQFYPRPGTPAARMKRVPTQIVKGRSRELTVLFESYQPH 394
Query: 421 LGMEGRVERIWITEIAADGIHL-----GYVQVLVP----STGNMLGTSALVKITSVGRWS 471
+ G+ ER+W+++IA DG L Y Q+L+P +++G SA+V+I RWS
Sbjct: 395 QHLVGKTERVWVSDIARDGTSLVAHTKNYTQILLPGGEDQRAHLMGRSAMVEIYESSRWS 454
Query: 472 VFGEVIKILN--------------------QVDDKIASNRRI----SSQVRQDKCSSCSS 507
V+++++ + +K+ +R+ + ++ + CS C S
Sbjct: 455 CKARVLEVIDADPTVARVRLSVIPSEEESKMIREKLTKGKRVRIKKAQEMPETGCSVCGS 514
Query: 508 QNESSACSNEPDP 520
S+C + +P
Sbjct: 515 D---SSCPSSKEP 524
>gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 542
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 262/434 (60%), Positives = 339/434 (78%), Gaps = 9/434 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG ++++TFGCSHN SDSE+MAGQLSA+GY LT + E+AD+W++NTCTVK+PSQSAM
Sbjct: 108 VPGRAKVHVRTFGCSHNISDSEFMAGQLSAYGYTLTTSPEDADLWVVNTCTVKNPSQSAM 167
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T+I + K+A K LV+AGCVPQG ++ +EL+ ++++GV QIDRVVE VE TL G VR+L
Sbjct: 168 NTVIERGKAAGKKLVIAGCVPQGDKNARELDDLTLLGVTQIDRVVEAVERTLAGDAVRML 227
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LPALDLPK+RRN+ VEI+P++ GCLG CTYCKTKHARG LGSY E+LV RV+T I
Sbjct: 228 AKKTLPALDLPKIRRNEHVEIVPLSTGCLGKCTYCKTKHARGELGSYAPEALVARVQTAI 287
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 288 AEGVTEIWLSSEDTGAYGIDLGTDVTRLLRDVTAALPKDGSCMLRLGMTNPPYILAHLDA 347
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+AE + HP VY+FLH+PVQ+GSDAVL M REY ++DF VVDTL+E VPG+ IATDIIC
Sbjct: 348 VAEAMHHPGVYAFLHIPVQAGSDAVLGRMKREYVVADFEKVVDTLLERVPGITIATDIIC 407
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGET+ED+ T+ L ++Y F ++H+SQFYPRPGTPAARMKKV S VK+RSRELT+
Sbjct: 408 GFPGETEEDWEMTMALCRKYDFIELHLSQFYPRPGTPAARMKKVNSREVKRRSRELTNYI 467
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVP----STGNMLGTSALVKIT 465
E++ P+ + G +R+W+T+IA DGI L YVQVL+P ++G SA+VKI
Sbjct: 468 ESYLPHGALVGTTQRVWVTDIAKDGISLVAHTKSYVQVLLPGGEAERARLMGKSAVVKII 527
Query: 466 SVGRWSVFGEVIKI 479
RW V GEV+++
Sbjct: 528 ESARWYVRGEVLEV 541
>gi|384253319|gb|EIE26794.1| hypothetical protein COCSUDRAFT_35241 [Coccomyxa subellipsoidea
C-169]
Length = 494
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/426 (61%), Positives = 332/426 (77%), Gaps = 9/426 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIWLINTCTVKSPSQSAMDTLI 118
I++KTFGC+HN SDSEYM GQL +GY L D + AD+WL+NTCTVK+PSQ+AM TL+
Sbjct: 14 IWVKTFGCAHNMSDSEYMMGQLQDYGYRLLADDKQDAADLWLVNTCTVKNPSQAAMSTLV 73
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A+ K+ K LVV GCVPQG + + EL+ +S++GV QIDRVVE VEETL+G+ V +L +KK
Sbjct: 74 ARGKALNKKLVVCGCVPQGDKKVPELQDLSLLGVTQIDRVVEAVEETLRGNVVHMLAKKK 133
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG- 237
LP LDLPKVRRN VEILP++ GCLGACTYCKTKHARG LGSY + +LV R D
Sbjct: 134 LPRLDLPKVRRNAHVEILPLSTGCLGACTYCKTKHARGQLGSYELSALVHRAAAAAVDPL 193
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
V+EVWLSSEDTGAYGRD+ +LP LL A+ A LP DG T+LRIGMTNPPFILEHL +IAE
Sbjct: 194 VREVWLSSEDTGAYGRDLDTSLPDLLRALTAALPSDGRTILRIGMTNPPFILEHLPDIAE 253
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
L HPCV+S+LHVPVQSGSDAVL+AMNREYT ++FR V DTL+ELVPG+++ATDIICGFP
Sbjct: 254 ALNHPCVFSYLHVPVQSGSDAVLAAMNREYTSAEFRRVADTLLELVPGLELATDIICGFP 313
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
GETDEDF T+ L+++Y+FP HISQFYPRPGTPAARMKK+P+ V K RSR LT++ + F
Sbjct: 314 GETDEDFEATMALVRQYRFPHTHISQFYPRPGTPAARMKKLPNGVAKARSRALTALVDGF 373
Query: 418 TP-YLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWS 471
Y + G ++R+ + E+AADG HL Y+QVL+ ++G+ V++T+ RW+
Sbjct: 374 GDCYQRLVGSLQRVCVVELAADGRHLVGHTKSYIQVLLEPQEGLMGSVVTVRVTAASRWN 433
Query: 472 VFGEVI 477
V G+++
Sbjct: 434 VTGDIV 439
>gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538, partial [Chlorella
variabilis]
Length = 499
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/437 (61%), Positives = 330/437 (75%), Gaps = 14/437 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--NSEEADIWLINTCTVKSPSQS 112
+PGT+ I++KTFGCSHN SDSEYM GQL +G+ L D +S AD+WL+NTCTVKSPSQS
Sbjct: 63 VPGTQRIWVKTFGCSHNSSDSEYMMGQLQEYGFKLVDEADSAAADLWLLNTCTVKSPSQS 122
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
AMDTL+ + + K L+VAGCVPQG R EL G+S++GV QIDRVVE VEETLKGH V+
Sbjct: 123 AMDTLLRRGRRLGKALLVAGCVPQGDRRTAELRGLSLLGVTQIDRVVEAVEETLKGHTVQ 182
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL +K LP LDLPKVRRN+ +EILP++ GCLGACTYCKTKHARG LGSY LV R
Sbjct: 183 LLAKKALPRLDLPKVRRNRHIEILPLSTGCLGACTYCKTKHARGQLGSYDPAELVRRAAA 242
Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
AD V+E+WLSSEDTGAYGRDIG +LP LL +V LPPDG MLR+GMTNPPFILEH
Sbjct: 243 AAADPQVREIWLSSEDTGAYGRDIGTSLPALLRELVEVLPPDGRCMLRVGMTNPPFILEH 302
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ +LR V+S+LHVPVQSGSDAVL+AM REY+ + FR V DTL+ VPG+++ATD
Sbjct: 303 LAEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRREYSAAQFRRVCDTLLAAVPGLELATD 362
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
IICGFPGET+ED T+ L+ +Y+FP HISQFYPRPGTPAARM++VP+AVVK+RSRE+T
Sbjct: 363 IICGFPGETEEDHGATLALLDKYRFPHCHISQFYPRPGTPAARMRRVPTAVVKQRSREVT 422
Query: 412 SVFEAFT-PYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPS-----TGNMLGTSA 460
+ E++ Y G+ G +R + + AADG+H Y QVLVP+ +G++LG
Sbjct: 423 AAVESWCGSYSGLVGATQRCCVVDTAADGVHAVAHNKAYTQVLVPAEAPDGSGSLLGCVV 482
Query: 461 LVKITSVGRWSVFGEVI 477
++ S RWSV EV+
Sbjct: 483 EARVVSASRWSVKAEVV 499
>gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299]
gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299]
Length = 435
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 256/433 (59%), Positives = 334/433 (77%), Gaps = 9/433 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG +++KTFGCSHN SDSE+MAGQL A+GY L + ++AD+W++NTCTVK+PSQSAM
Sbjct: 3 VPGVAKVHVKTFGCSHNHSDSEFMAGQLGAYGYDLVTDPDDADVWVVNTCTVKNPSQSAM 62
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T+I K K+ K LV+AGCVPQG + KELE +S++GV QIDR+V+VVE TL G VRLL
Sbjct: 63 NTVITKGKAQGKKLVIAGCVPQGDKKAKELEDLSLIGVTQIDRIVDVVERTLAGDAVRLL 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LP+LDLPKVRRN+ VEILP++ GCLG CTYCKTKHARG LGSY+ E+LV RV+T I
Sbjct: 123 EKKPLPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELGSYSPEALVQRVQTAI 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 183 AEGVTEIWLSSEDTGAYGIDLGTDITRLLRDLTAVLPTDGSCMLRLGMTNPPYILAHLDA 242
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+AE + HP VY+FLH+PVQ+GSDAVL M REY +++F V DTL+ VPG+ IATDIIC
Sbjct: 243 VAEAMHHPSVYAFLHIPVQAGSDAVLDRMKREYVVAEFEKVADTLLAKVPGITIATDIIC 302
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGET ED+ +T+ L ++Y+F ++H+SQFYPRPGTPAARMK+V + VK+RSRELT+
Sbjct: 303 GFPGETSEDWEKTMALCRKYEFVELHLSQFYPRPGTPAARMKRVDTKEVKRRSRELTAYI 362
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVP----STGNMLGTSALVKIT 465
E++ P+ + G +R+W+T++A D + L YVQVL+P + ++G SA V+I
Sbjct: 363 ESYRPHDALVGTTQRVWVTDVAKDKVSLVGHTKSYVQVLLPGGEANRARLMGKSAEVRII 422
Query: 466 SVGRWSVFGEVIK 478
RW V GEVI+
Sbjct: 423 DAHRWHVTGEVIE 435
>gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/433 (60%), Positives = 330/433 (76%), Gaps = 10/433 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE--ADIWLINTCTVKSPSQS 112
+PGT+ +++KTFGCSHN SDSEYMAGQLS +GY L +++E AD+WLIN+CTVK PSQ+
Sbjct: 3 VPGTQAVWVKTFGCSHNISDSEYMAGQLSDYGYRLVEDAERDAADLWLINSCTVKGPSQA 62
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
M LIA K+ K +VVAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ V
Sbjct: 63 GMSNLIAAGKAGGKRVVVAGCVPQGDKKLPELQGVSVLGVTQIDRVVEAVEETLRGNTVS 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+L +K LP LDLPKVRRNK +EI+PI+ GCLGACTYCKTKHARGHLGSY +L RVR
Sbjct: 123 MLAKKALPRLDLPKVRRNKHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALAERVRQ 182
Query: 233 VIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
AD V+E+WLSSEDTGAYGRDIG +LP LL+ ++A LPPDG T+LR+GMTNPP++LEH
Sbjct: 183 AAADPWVREIWLSSEDTGAYGRDIGSSLPELLDKLIAVLPPDGRTLLRVGMTNPPYVLEH 242
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+ + + LRHPCV+S+LHVPVQS SDAVL AM REYT+++FR V+DTL+ VPGM++ATD
Sbjct: 243 LEALCKALRHPCVFSYLHVPVQSASDAVLEAMKREYTVAEFRRVIDTLLAGVPGMELATD 302
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
II FPGE+ ED T+ L++ Y+FP HISQFYPRPGTPAARMK K+P+ V K+RSREL
Sbjct: 303 IITAFPGESPEDHAATLELLRTYRFPHTHISQFYPRPGTPAARMKNKIPTQVSKQRSREL 362
Query: 411 TSVFEAFTP-YLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKI 464
+ +++ Y + G V+R + + AADG+ L Y QVL+ ++G V I
Sbjct: 363 AAEVDSWADVYQHLVGTVQRAVVVDTAADGVSLVAHTRSYTQVLLEPQPGLMGAVVEVAI 422
Query: 465 TSVGRWSVFGEVI 477
S RWSV G V+
Sbjct: 423 DSASRWSVRGRVV 435
>gi|348685958|gb|EGZ25773.1| hypothetical protein PHYSODRAFT_555473 [Phytophthora sojae]
Length = 649
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/477 (54%), Positives = 354/477 (74%), Gaps = 11/477 (2%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P +PG++ I+MKT+GCSHN SDSEYM G L+++GY T + + A +WL+N+CTVK PSQ+
Sbjct: 56 PSVPGSQLIWMKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 115
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
A L+ K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 116 AFMHLVVKGRKQSKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 175
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL + +LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 176 LLSKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 235
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
VI++GV E+WLSSEDTGAYG DIG +LP LL ++ E+ PDG MLR+GMTNPP+IL+HL
Sbjct: 236 VISEGVTEIWLSSEDTGAYGIDIGTDLPTLLRKLL-EVVPDG-VMLRVGMTNPPYILDHL 293
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IAEVL+H VYSFLHVPVQSGSD VL AMNREYT ++FR V D L+ VP + +ATDI
Sbjct: 294 DAIAEVLKHERVYSFLHVPVQSGSDDVLLAMNREYTAAEFRRVADELLAKVPDLTLATDI 353
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFP ET+E F++T++L+++Y+F ++ISQFYPRPGTPAA+MK+VP+ VVK RSR+LT
Sbjct: 354 ICGFPSETEEHFDETMDLVEKYRFHIMNISQFYPRPGTPAAKMKRVPTQVVKNRSRKLTK 413
Query: 413 VFEAFTPYLGMEGRVERIWI-TEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITS 466
+FE F PY + G +++W+ TE++ D + Y +VL+P +++G SA V++ +
Sbjct: 414 LFETFEPYTHLVGTTQKVWVNTEVSDDKKYTVAHTKNYTKVLLPRDDSLIGCSAEVRVLT 473
Query: 467 VGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSAC 523
R+ + GEVI ++ + I Q+R + S + ++++ + + + S+C
Sbjct: 474 AARFHITGEVI---SRSQPATVAAAAIREQIRTEGDLSAADRSKALSKAQKAAASSC 527
>gi|424513077|emb|CCO66661.1| predicted protein [Bathycoccus prasinos]
Length = 614
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/452 (55%), Positives = 338/452 (74%), Gaps = 9/452 (1%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+ I++KTFGC+HN SDSE+M+GQL A+GY LTD+ EA++W++NTCTVK+PSQ+AM
Sbjct: 79 VPGTQRIHVKTFGCAHNHSDSEFMSGQLQAYGYKLTDDPSEANLWVVNTCTVKNPSQAAM 138
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T++A+ K+ + P+VV GCVPQG + KEL VS++GV QIDR+VE VE TL+G V +L
Sbjct: 139 NTVLARAKTNEVPVVVCGCVPQGDQKAKELAEVSLLGVSQIDRIVEAVERTLRGERVLML 198
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LP LDLPKVRRN+ VEI+P++ GCLG CTYCKTKHARG LGSY +E+++GR + I
Sbjct: 199 EKKSLPKLDLPKVRRNERVEIIPLSTGCLGQCTYCKTKHARGELGSYEIEAIIGRAKLAI 258
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV E+WLSSEDTGAYG DIG N+ L A+V LP D S MLR+GMTNPP+IL HL
Sbjct: 259 EEGVTEIWLSSEDTGAYGLDIGSNVAELFKALVDVLPADQSVMLRLGMTNPPYILAHLPA 318
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IAE +RHP V+S++H+PVQSGS VL M REYT +F V D L+E VP + IATDIIC
Sbjct: 319 IAEAMRHPSVFSWIHIPVQSGSSKVLDDMKREYTREEFEQVCDYLLEHVPDITIATDIIC 378
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGET+ ++ +T++LI++YKFP+VHISQFY RP TPA RMK+V + VK RSRELT +
Sbjct: 379 GFPGETESEWRETMSLIEKYKFPEVHISQFYARPNTPAFRMKRVNTLTVKNRSRELTKLT 438
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVP----STGNMLGTSALVKIT 465
E++ P+ +EG+ ++WIT+IAADG+ L Y Q+L+P + +GTSA VK+
Sbjct: 439 ESYFPWTKLEGQKMKVWITDIAADGVSLVGHTKSYSQILLPGGEENVEKYMGTSAHVKVL 498
Query: 466 SVGRWSVFGEVIKILNQVDDKIASNRRISSQV 497
S RWS E+I+ ++ I S+ + ++
Sbjct: 499 SSSRWSCKAEIIENESEAAAGIQSSTSLHKKI 530
>gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
Length = 529
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/491 (52%), Positives = 347/491 (70%), Gaps = 15/491 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN-HLSKTGSLSPKIPGTE 59
+EDIEDL++ ++ N V + + +K + + N + + IPGT+
Sbjct: 10 VEDIEDLISKEESYSVDVRSKISRNNVKLRSRPSKRQGKSDSNVEVDEKAVGDSIIPGTQ 69
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++T+GCSHN+SD EYMAGQLS++GY +T+ EEAD+WL+N+C VK+P++ + I
Sbjct: 70 GIYIRTWGCSHNKSDGEYMAGQLSSYGYKITEIPEEADLWLLNSCAVKNPAEDSFYNDIR 129
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K KK LV+AGCVPQG + ++G+S+VGVQQIDRVVEVVEETLKGH VRL +K+
Sbjct: 130 KAKELKKYLVLAGCVPQGQKRHPLMDGISVVGVQQIDRVVEVVEETLKGHSVRLFGQKRK 189
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L+LPK+R+N VEI+ IN GCL ACTYCKTKHARG LGSY +E +V R +T
Sbjct: 190 NGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNACTYCKTKHARGDLGSYPIEDIVERAKT 249
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+W++SEDTGAYG DIGV+LP LL +V ++ PDG+ MLRIGMTNPP+ILEHL
Sbjct: 250 AFNEGVAEIWITSEDTGAYGIDIGVSLPDLLWQLV-KVIPDGA-MLRIGMTNPPYILEHL 307
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+E+A++L HP VYSFLHVPVQ+GSD VL M REYT++DF VV+ L + VPG+ IATDI
Sbjct: 308 EEMAKILSHPRVYSFLHVPVQAGSDKVLYDMRREYTVTDFEKVVNYLSDKVPGITIATDI 367
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFP E +DF +T+ LI+ +KFP V I+QFYPRPGTPAA+MK++P+ VK RSRELT
Sbjct: 368 ICGFPTEEKDDFAKTLRLIERHKFPSVFINQFYPRPGTPAAKMKRIPTEEVKNRSRELTQ 427
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSV 467
+F+++ PY G +RI ITE++ DG H Y QVLVP ++LG + V I
Sbjct: 428 LFKSYRPYDHKLGERQRILITELSHDGNHFVGHNKFYDQVLVPMDMDLLGKTVEVDIIET 487
Query: 468 GRWSVFGEVIK 478
G+ + G V++
Sbjct: 488 GKHYLMGRVVR 498
>gi|340371624|ref|XP_003384345.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Amphimedon queenslandica]
Length = 550
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 253/448 (56%), Positives = 328/448 (73%), Gaps = 14/448 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG+++IY+KT+GCSHN SD EYMAG L+A GY +TD+ +A +WL+N+CTVK PS+
Sbjct: 63 IPGSQSIYIKTWGCSHNTSDGEYMAGLLAAEGYTITDSPLDAHVWLLNSCTVKGPSEDGF 122
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ I K K K LVVAGCVPQG +DL E++ +S VGV+QIDR+VEVVE LKG VRL
Sbjct: 123 KSAIKKGKELNKTLVVAGCVPQGQKDLDEIKDISAVGVKQIDRIVEVVEGALKGGTVRLF 182
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
K+ P+L+LPK+R+N VEI+PIN GCL CTYCKTKH+RG+L SY + ++
Sbjct: 183 GTKRGSGRQLAGPSLELPKIRKNPLVEIIPINSGCLNHCTYCKTKHSRGNLASYYPQEII 242
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTGAYGRDIGV LP LL +V E+ P+GS MLRIGMTNPP+
Sbjct: 243 SRATQAFEEGVVEIWLTSEDTGAYGRDIGVTLPELLWQLV-EVMPEGS-MLRIGMTNPPY 300
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
I+EHL+E+A++L HP VYSFLHVPVQSGSDAVL M REYT+ FR VVD L E VPG+
Sbjct: 301 IMEHLEEMAKILSHPRVYSFLHVPVQSGSDAVLGEMKREYTIKQFRKVVDYLKEQVPGVT 360
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATD+ICGFP ET+EDF++T++L+ EYKFP + I+QFYPRPGTPAA+MK++P+ VK RS
Sbjct: 361 IATDVICGFPTETEEDFSETLSLVNEYKFPSLFINQFYPRPGTPAAKMKRIPTNEVKNRS 420
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
R+LT +F ++TPY G +E I +TE++ D G Y QVLVP ++G ALV
Sbjct: 421 RKLTELFHSYTPYSKRVGGIETILVTEMSHDKRYYVGHTKYYEQVLVPQYKELMGKMALV 480
Query: 463 KITSVGRWSVFGEVIKILNQVDDKIASN 490
KI S G+ + GE+I +L D + ++
Sbjct: 481 KIVSTGKHFMMGEIIDVLRLPSDSVIND 508
>gi|340509229|gb|EGR34782.1| hypothetical protein IMG5_001960 [Ichthyophthirius multifiliis]
Length = 587
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/499 (50%), Positives = 338/499 (67%), Gaps = 24/499 (4%)
Query: 3 DIEDLLAGSG-GGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------- 54
D+EDL+ G+ RL N + PK + + L T S
Sbjct: 7 DLEDLIQGNELADEYTQNVRLKPNTIKKRPKKQLKQSEQKQDTLEHTADDSEIKFNQSTN 66
Query: 55 ------IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
IPG + +Y+KTFGCSHN SDSE+M GQL+ +GY L +N +EADI L+N+CTVK+
Sbjct: 67 TQQNTIIPGIQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLVENEKEADIILVNSCTVKN 126
Query: 109 PSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
PSQ A T++ K K +VVAGCVPQG R++ LE VS++G+ QIDRVVEV+EETLKG
Sbjct: 127 PSQDAFMTVVKSAKQQNKHIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVIEETLKG 186
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ VRLL +K LP+LDLPK+R+N +EI+PIN GCLG+CTYCKTKHARG LGSYT+E+++
Sbjct: 187 NTVRLLGKKALPSLDLPKIRKNNLIEIIPINTGCLGSCTYCKTKHARGKLGSYTLEAILA 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R V +GVKE+WL+SEDTGAYGRDIG ++ LL +V +LP D MLRIGMTNPP+I
Sbjct: 247 RCEQVCEEGVKEIWLTSEDTGAYGRDIGTDISELLKHLVEKLPND--VMLRIGMTNPPYI 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LEH++ I+ +L HP V+SFLH+PVQ+G++ VL MNREYT +F V D L + VP + +
Sbjct: 305 LEHMENISLILNHPRVFSFLHIPVQAGNNTVLENMNREYTREEFEYVCDYLKKNVPNVTL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
ATDIICGFP ET+ F +T++L+K+Y+FP ++ISQFYPRPGT A +MKKVPS VK RS+
Sbjct: 365 ATDIICGFPSETNAQFEETISLVKKYEFPIINISQFYPRPGTAAMKMKKVPSIDVKSRSK 424
Query: 409 ELTSVFEAFTPYLGMEGRVERIWIT--------EIAADGIHLGYVQVLVPSTGNMLGTSA 460
++T VFE+F + + G ++++WI + G Y +VL+P +LG S
Sbjct: 425 KITEVFESFHRWDYLVGSIQKVWINDKEEKKGRQFQLVGHTKQYAKVLLPYNEELLGQSV 484
Query: 461 LVKITSVGRWSVFGEVIKI 479
L K+ W + G +++I
Sbjct: 485 LFKVEKALMWHIEGTILEI 503
>gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
Length = 624
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/431 (57%), Positives = 324/431 (75%), Gaps = 8/431 (1%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P +PGT+ I++KT+GCSHN SDSEYM G L+++GY T + + A +WL+N+CTVK PSQ+
Sbjct: 55 PSVPGTQLIWIKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 114
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
A L K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 115 AFMHLAVKGRKQNKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 174
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL + +LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 175 LLAKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 234
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
VI +GV E+WLSSEDTGAYG DIG +LP L+ ++ E+ PDG MLR+GMTNPP+IL+HL
Sbjct: 235 VINEGVTEIWLSSEDTGAYGIDIGTDLPTLMRKLL-EVVPDG-IMLRVGMTNPPYILDHL 292
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IAEVL H VYSFLHVPVQSGSD VL AMNREYT +FR V D L+ VP + +ATDI
Sbjct: 293 DAIAEVLNHERVYSFLHVPVQSGSDDVLLAMNREYTAGEFRRVADELLAKVPDLTLATDI 352
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFP ET+E F++T+ L+ +Y+F ++ISQFYPRPGTPAA+MK+V + +VK RSR+LT
Sbjct: 353 ICGFPTETEEHFDETMELVDKYRFHIMNISQFYPRPGTPAAKMKRVSTQIVKNRSRKLTK 412
Query: 413 VFEAFTPYLGMEGRVERIWI-TEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITS 466
+FE F PY + ++W+ TE++ D + Y +VL+P +++G +A V++ +
Sbjct: 413 LFETFEPYTRLVDTTLKVWVNTEVSDDKKYTVAHTKNYTKVLLPRDDSLIGCTAEVRVLT 472
Query: 467 VGRWSVFGEVI 477
R+ GEVI
Sbjct: 473 AARFHATGEVI 483
>gi|348512452|ref|XP_003443757.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Oreochromis niloticus]
Length = 516
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/490 (52%), Positives = 334/490 (68%), Gaps = 22/490 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED+++ S P + P+ K K L D L + SL IPGT+
Sbjct: 9 MEDIEDMVSSSD----PTPHERQSARKSIIPRSRKKKELLSDEEL-QADSL---IPGTQK 60
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+MKT+GCSHN SD EYMAGQL+A GY +TD+ EAD+WL+N+CTVK+P++ I K
Sbjct: 61 IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTEADVWLLNSCTVKNPAEDHFRNSIKK 120
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL +KK
Sbjct: 121 AQDQEKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG 180
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R R
Sbjct: 181 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS 240
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+ILEHL+
Sbjct: 241 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIP--EGAMLRLGMTNPPYILEHLE 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+ IATDII
Sbjct: 299 EMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLKERVPGVTIATDII 358
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGET+EDF T++L+K Y+FP + I+QFYPRPGTPAARM++V + V K+R++EL+ V
Sbjct: 359 CGFPGETEEDFQATIDLVKAYRFPSLFINQFYPRPGTPAARMEQVAAHVKKQRTKELSQV 418
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
F ++ PY G + + +TE + D + Y QVLVP G +V I G
Sbjct: 419 FHSYNPYDHKVGERQHVLVTEESFDSQYYVAHNKYYEQVLVPKRVEFKGKMIVVDIYEAG 478
Query: 469 RWSVFGEVIK 478
+ + G+ ++
Sbjct: 479 KHFMKGKPVE 488
>gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni]
gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni]
Length = 570
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/435 (56%), Positives = 315/435 (72%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +Y+KT+GC+HN SDSEYMAGQL+++GY L +EAD+WL+N+CTVK+PS+
Sbjct: 71 IPGTQKVYIKTWGCAHNNSDSEYMAGQLASYGYQLCSGKDEADLWLLNSCTVKNPSEDTF 130
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG + L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 131 RNEIESGMQNGKHVVVAGCVPQGGPKSEYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 190
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ +L LPKVR+N VEI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 191 QNKKVNGRRVAGASLALPKVRKNPLVEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 250
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 251 ERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 308
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VYSFLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 309 ILEHLEEVAKVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRARVPGLT 368
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+ DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 369 IATDIICGFPTETEADFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 428
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ LT +F + PY G G V + +TEI+ D +H Y Q+L+P N+LGT V
Sbjct: 429 KRLTDLFYTYEPYAGRVGEVYAVLVTEISHDKLHYVGHNKSYEQILLPMRKNLLGTRVHV 488
Query: 463 KITSVGRWSVFGEVI 477
+ITSV ++S+ G+++
Sbjct: 489 RITSVSKFSMMGDIL 503
>gi|363730366|ref|XP_418914.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Gallus gallus]
Length = 582
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/489 (51%), Positives = 339/489 (69%), Gaps = 19/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED++ S P +R V + ++ R + S+ IPG +
Sbjct: 9 LEDIEDIV--SAQDLKPRDWRFVRKNVFPKVRKRSSQQRAQTDDDPPHDSV---IPGIQK 63
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++ I K
Sbjct: 64 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHFRNSIKK 123
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 124 AQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQS 243
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHLE 301
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IATDII
Sbjct: 302 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDII 361
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L+ +
Sbjct: 362 CGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQL 421
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
F ++ PY G +R+ +TE + D + Y QVLVP ++G V I G
Sbjct: 422 FHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPALMGKMVEVNIYEAG 481
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 482 KHFMKGQPV 490
>gi|45361233|ref|NP_989194.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
(Silurana) tropicalis]
gi|82186429|sp|Q6P4Y0.1|CDKAL_XENTR RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus
(Silurana) tropicalis]
Length = 553
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/492 (51%), Positives = 344/492 (69%), Gaps = 25/492 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKNK + + T IPGT
Sbjct: 9 LDDIEDIVSATD---PKPHDRQNARQNIVPRARKRNKNKIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+CTVKSP++ I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSI 119
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + A K +V++GCVPQ + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAA 239
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELS 417
Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITS 466
+F +++PY G + + +TE + D + Y QVLVP +G VKI
Sbjct: 418 QLFHSYSPYDHKIGEEQHVLVTEESFDSQYYVSHNRFYEQVLVPKDPAFVGKMVEVKIFE 477
Query: 467 VGRWSVFGEVIK 478
G+ + G+ ++
Sbjct: 478 AGKHFMKGQPVQ 489
>gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis]
gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis]
Length = 555
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/437 (55%), Positives = 320/437 (73%), Gaps = 15/437 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY++T+GCSHN SDSEYMAGQL+A+GY +TD+ + AD+WL+N+CTVKSP++
Sbjct: 58 IPGTQTIYVRTWGCSHNNSDSEYMAGQLAAYGYKITDDEQCADLWLLNSCTVKSPAEDGF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K+ K LVVAGCVPQG ++G+S+VGVQQIDRVVEVVEETLKGH VRL
Sbjct: 118 RNAIKKAKAQGKHLVVAGCVPQGQPRHDTVKGISVVGVQQIDRVVEVVEETLKGHTVRLF 177
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +LDLPK+R+N VEI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 178 GQKKADGKKTGGASLDLPKIRKNPLVEIIAINTGCLNQCTYCKTKHARGDLGSYPPEEIV 237
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYG+DIGV LP LL +V +P G +RIGMTNPP+
Sbjct: 238 NRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPELLWQLVKVIPEGGR--MRIGMTNPPY 295
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VYSFLHVPVQS S VL+ M REY DF VV+ L + VP +
Sbjct: 296 ILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLADMKREYIAEDFEHVVNYLRQRVPDLT 355
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATD+ICGFP ET++DF +T++L+K+YKFP + I+QFYPRPGTPAARMK++P+ VK+R+
Sbjct: 356 IATDLICGFPTETEDDFQKTLDLVKKYKFPSLFINQFYPRPGTPAARMKRLPTEEVKRRT 415
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLV-PSTGNMLGTSAL 461
RE++ +F+++T Y G V+ + +TE + DG+H Y QVLV G ++G
Sbjct: 416 REVSKLFQSYTTYDHKVGAVQEVLVTEESHDGVHYVGHNKAYDQVLVKKDEGELMGKIVK 475
Query: 462 VKITSVGRWSVFGEVIK 478
V++TS G+ + G V++
Sbjct: 476 VEMTSSGKHYLMGRVMQ 492
>gi|387015104|gb|AFJ49671.1| CDK5 regulatory subunit associated protein 1-like 1 [Crotalus
adamanteus]
Length = 577
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/489 (50%), Positives = 339/489 (69%), Gaps = 19/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ P F N + PK K + + + + IPG +
Sbjct: 9 LEDIEDIVSAED----PKPFDRQFNRKNIIPKVRKRQSQ-KNVEVDDPPPRDSVIPGIQK 63
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY++T+N+ EAD+WL+N+CTVKSP++ I K
Sbjct: 64 IWIRTWGCSHNSSDGEYMAGQLAAYGYSITENAAEADLWLLNSCTVKSPAEDHFRNSIKK 123
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ KK +V+AGCVPQ L G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 124 AQEGKKKIVLAGCVPQAQPRQDYLHGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY++E LV R +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYSIEELVNRGKQS 243
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 301
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLHVPVQS SD+VL M REY ++DF+ VVD L VPG+ +ATDII
Sbjct: 302 EMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCVADFKHVVDFLKTKVPGITVATDII 361
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETDEDF +T+ L++EY+FP + I+QFYPRPGTPAA+M +VP+ + K+R++EL+ +
Sbjct: 362 CGFPGETDEDFQETMKLVEEYRFPSLFINQFYPRPGTPAAKMPQVPAQIKKQRTKELSKL 421
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
F ++ PY G +++ +TE + D Y Q+LVP + +G V+I G
Sbjct: 422 FHSYNPYDHKIGERQKVLVTEESFDSKFYVAHNKFYEQILVPKNPDFMGKMVEVEIFEAG 481
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 482 KHFMRGQPV 490
>gi|383859676|ref|XP_003705318.1| PREDICTED: CDKAL1-like protein-like [Megachile rotundata]
Length = 540
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/489 (52%), Positives = 338/489 (69%), Gaps = 21/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+ S P + V K N+ + L + + +PGT+T
Sbjct: 9 IEDIEDLI--SSQDITPKERYSSRKNITVRSKRNQLR-----EELPQPPVFNSIVPGTQT 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYMAGQL+A+GY LT++ +AD+WL+N+CTVKSP++ I
Sbjct: 62 IYVKTWGCTHNSSDSEYMAGQLAAYGYRLTEDKSKADLWLLNSCTVKSPAEDHFRNEIEA 121
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 122 GRKQGKHIVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNSVRFLQQKKEA 181
Query: 181 -------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 182 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 241
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTG YGRDIG +LP LL ++ E+ PDG M+R+GMTNPP+ILEHL+
Sbjct: 242 FEEGVCELWLTSEDTGTYGRDIGTSLPELLWKLI-EVVPDGC-MIRVGMTNPPYILEHLE 299
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF VV+ L E VPG+ IATDII
Sbjct: 300 EMSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFEMVVNFLRERVPGLTIATDII 359
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFP ET++DF +T+ L ++YKFP + I+QF+PRPGTPAARM+KVP+ VKKR++ L+
Sbjct: 360 CGFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMQKVPTQDVKKRTKRLSEF 419
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
F++++PY G ++ + +TE++ D H Y QVLVP LG VKI
Sbjct: 420 FQSYSPYDNRVGLIQDVLVTEVSHDKKHYVAHNKFYEQVLVPLKEEYLGKMIKVKIVETT 479
Query: 469 RWSVFGEVI 477
++S+ GE I
Sbjct: 480 KYSMKGEPI 488
>gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis]
gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis]
Length = 553
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/468 (52%), Positives = 330/468 (70%), Gaps = 21/468 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 70 VPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-GKDEADLWLLNSCTVKNPSEDTF 128
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 188
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ AL LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY + +V
Sbjct: 189 QNKKVHGRRVAGAALSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPDEIV 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLT 366
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 367 IATDIICGFPTETEQDFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 426
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ LT +F ++ PY G EG++ + +TEI+ D +H Y QVL+P N+LGT V
Sbjct: 427 KRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRV 486
Query: 463 KITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNE 510
+IT ++S+ E++ D++ R S+ Q K S+ SS+ +
Sbjct: 487 RITGTSKFSMMAEIL------DEESDWTRCDYSKQTQPKASTSSSRGQ 528
>gi|147902192|ref|NP_001084956.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
laevis]
gi|82185344|sp|Q6NS26.1|CDKAL_XENLA RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis]
Length = 556
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/492 (51%), Positives = 343/492 (69%), Gaps = 25/492 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKN + + T IPGT
Sbjct: 9 LDDIEDMVSATD---PKPHDRQSARKNIVPRARKRNKNNIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+CTVKSP++ I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAEDHFRNSI 119
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + A K +VV+GCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAT 239
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++V + V K+R++EL+
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVLAHVKKRRTKELS 417
Query: 412 SVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITS 466
+F ++ PY G+ +++ +TE + D + Y QVLVP + +G VKI
Sbjct: 418 QLFHSYDPYDHKIGQKQQVLVTEESFDSQYYVAHNRFYEQVLVPKDPDFMGKMVEVKIFE 477
Query: 467 VGRWSVFGEVIK 478
G+ + G+ ++
Sbjct: 478 AGKHFMKGQPVQ 489
>gi|413918350|gb|AFW58282.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 318
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/326 (76%), Positives = 279/326 (85%), Gaps = 16/326 (4%)
Query: 1 MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
MEDIED+L +G G PPG RLP+ AV V PK S+ P+
Sbjct: 1 MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
IA VL HPCVYSFLHVPVQSGSD+VL
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVL 316
>gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi]
gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi]
Length = 554
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 257/496 (51%), Positives = 338/496 (68%), Gaps = 26/496 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKN---KPRLHDNHLSKTGSL----SP 53
++DIEDL++ P R N V + K KP L D+ +T
Sbjct: 12 IDDIEDLISADD---IKPRDRYE-NKKNVTVRAKKRAPIKPTLSDDEKEETKPQKIIHES 67
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
IPGT+ +Y+KT+GC+HN SDSEYMAGQL++FGY L+ +E AD+WL+N+CTVK+PS+
Sbjct: 68 VIPGTQKVYVKTWGCAHNNSDSEYMAGQLASFGYKLSGKNE-ADLWLLNSCTVKNPSEDT 126
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRL
Sbjct: 127 FRNEIEAGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRL 186
Query: 174 LHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
L KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +
Sbjct: 187 LQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 247 VDRARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGL 364
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR
Sbjct: 365 TIATDIICGFPTETEQDFEETMTLCEKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKR 424
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSAL 461
++ LT +F ++ PY G EG++ + +TEI+ D +H Y QVL+P N+LGT
Sbjct: 425 TKRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVR 484
Query: 462 VKITSVGRWSVFGEVI 477
V+ITS ++S+ GE++
Sbjct: 485 VRITSSSKFSMMGEIL 500
>gi|224045698|ref|XP_002191115.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Taeniopygia guttata]
Length = 582
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/435 (55%), Positives = 321/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++
Sbjct: 58 IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + KK +V+AGCVPQ + L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQEYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 177
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 178 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 237
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 238 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPKLLWKLV-EVIPEGA-MLRLGMTNPPY 295
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 296 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGIT 355
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETDEDF +T+ L++ Y+FP + I+QFYPRPGTPAA+M +VP+AV K+R+
Sbjct: 356 IATDIICGFPGETDEDFQETMKLVELYRFPSLFINQFYPRPGTPAAKMPQVPAAVKKQRT 415
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
++L+ +F +++PY G +R+ +TE + D + Y QVLVP ++G V
Sbjct: 416 KDLSQLFHSYSPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPLLMGKMVEV 475
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 476 DIYEAGKHFMKGQPV 490
>gi|432112178|gb|ELK35117.1| CDK5 regulatory subunit-associated protein 1-like 1 [Myotis
davidii]
Length = 572
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/435 (54%), Positives = 321/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKRAQEENKKIVLAGCVPQAQPRQDYLQGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL HP VY+FLH+PVQS SDAVL AM REY ++DFR VVD L E VPG+
Sbjct: 297 ILEHLEEMAKVLNHPRVYAFLHIPVQSASDAVLMAMKREYCVADFRRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF +++PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKYPTFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus]
Length = 542
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/489 (52%), Positives = 335/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + V PK K + + + LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYNSRKHITVRPKRRKQE----QEEVPQPPILSSIIPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SD+EYMAGQL+ +GY L+D+ +AD+WL+N+CTVK+P++ I
Sbjct: 63 IYVKTWGCTHNNSDTEYMAGQLAMYGYNLSDDKLKADLWLLNSCTVKNPAEDQFRNEIEH 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K K +V+AGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKG+ VR LH+KK
Sbjct: 123 GKKIGKHIVIAGCVPQGAPKSSFLQGLSIIGVQQIDRVVEVVEETLKGNTVRFLHQKKNS 182
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 GKKMGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYQPEEIVERAKQA 242
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG M+R+GMTNPP+ILEHL
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTSLPELLWKLV-DVIPDGC-MMRVGMTNPPYILEHLD 300
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF V+ L E VPG+ IATDII
Sbjct: 301 EMAKILRHPKVYSFLHIPVQSGSDQVLADMRREYTRADFEHTVNFLSERVPGLTIATDII 360
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFP ET+ DF +T+ L ++YKFP + I+QF+ RPGTPAARM KVP+ VK R++ L+
Sbjct: 361 CGFPTETEVDFEETMALCQKYKFPSLFINQFFSRPGTPAARMPKVPTQEVKTRTKRLSEF 420
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
F+++ PY G ++++ ITE++ D H Y QVL+P LG VKIT
Sbjct: 421 FQSYEPYQHKVGLLQKVLITEMSHDKQHYVGHNKFYEQVLIPMEERYLGKMIDVKITEAT 480
Query: 469 RWSVFGEVI 477
++S+ GE I
Sbjct: 481 KFSMKGEPI 489
>gi|397505362|ref|XP_003823235.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Pan paniscus]
gi|410220836|gb|JAA07637.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410329393|gb|JAA33643.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/489 (50%), Positives = 340/489 (69%), Gaps = 18/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F +++PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|93277076|ref|NP_060244.2| threonylcarbamoyladenosine tRNA methylthiotransferase [Homo
sapiens]
gi|74747199|sp|Q5VV42.1|CDKAL_HUMAN RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b
[Homo sapiens]
gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/489 (50%), Positives = 340/489 (69%), Gaps = 18/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F +++PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|332228849|ref|XP_003263603.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Nomascus leucogenys]
Length = 536
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/489 (50%), Positives = 340/489 (69%), Gaps = 18/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F +++PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIHESG 483
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|114605652|ref|XP_001171194.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 4 [Pan troglodytes]
Length = 536
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/489 (50%), Positives = 340/489 (69%), Gaps = 18/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F +++PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae]
gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae]
Length = 557
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/492 (51%), Positives = 337/492 (68%), Gaps = 34/492 (6%)
Query: 35 KNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
K KP +H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ E
Sbjct: 59 KPKPTIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKE 107
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
+AD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQQ
Sbjct: 108 DADLWLLNSCTVKNPSEDTFRNEIESGMKNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQ 167
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGAC 206
IDRVVEVVEETLKGH VRLL KK L LPKVR+N +EI+ IN GCL C
Sbjct: 168 IDRVVEVVEETLKGHSVRLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQC 227
Query: 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266
TYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL +
Sbjct: 228 TYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKL 287
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
V +P MLR+GMTNPP+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M RE
Sbjct: 288 VEVIPE--HCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKRE 345
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
Y DF VVD L E VPG+ IATDIICGFP ET+ DF +T+ L +Y+FP + I+QF+P
Sbjct: 346 YCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQFFP 405
Query: 387 RPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL---- 442
RPGTPAA+M+++P+ +VKKR++ LT +F + PY G G++ + +TEI+ D +H
Sbjct: 406 RPGTPAAKMERIPANLVKKRTKRLTDLFYTYEPYSGRVGQIYTVLVTEISHDKLHYVGHN 465
Query: 443 -GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQD- 500
Y QVL+P N+LGT V+ITS ++S+ GE++ DD+ R + Q +D
Sbjct: 466 KSYEQVLLPMRENLLGTRVHVRITSASKFSMVGEIL------DDERDWTRCANKQEEKDA 519
Query: 501 -KCSSCSSQNES 511
K + +++N++
Sbjct: 520 PKAEAVTTRNDN 531
>gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia]
gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia]
Length = 556
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/457 (53%), Positives = 324/457 (70%), Gaps = 26/457 (5%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP++H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
EEAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYIVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
QIDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
+V +P + MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL M R
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKR 342
Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
EY DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFF 402
Query: 386 PRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL--- 442
PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY G + + +TE++ D +H
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHYVGH 462
Query: 443 --GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 463 NKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499
>gi|428184659|gb|EKX53514.1| hypothetical protein GUITHDRAFT_64346 [Guillardia theta CCMP2712]
Length = 563
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/426 (57%), Positives = 314/426 (73%), Gaps = 8/426 (1%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSA 113
IPG + I++KT GC+HN SD EYMAG L+++GY +T+ SE+ D +L N+CTVK PSQ +
Sbjct: 2 IPGMQRIFLKTQGCAHNVSDGEYMAGLLASYGYEITETWSEDVDCFLFNSCTVKGPSQDS 61
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
++AK KS+ +VVAGCVPQG E + VSI+G QQI RVVEVVEE +KG+ V+L
Sbjct: 62 FLNMVAKAKSSGASVVVAGCVPQGEPGRGEFDDVSIIGTQQIHRVVEVVEEAIKGNTVKL 121
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +++ PAL+LPK+RRN VEI+PI++GCL CTYCKTKHARG L SYT +S+V RVRTV
Sbjct: 122 LGQRERPALELPKIRRNALVEIVPISMGCLNHCTYCKTKHARGDLVSYTPDSIVSRVRTV 181
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GV+EVWLSSEDTGAYG+DI V+LP LL AIV L PDG MLR+GMTNPP ILEH +
Sbjct: 182 ISEGVREVWLSSEDTGAYGKDINVSLPYLLGAIVDAL-PDG-VMLRVGMTNPPHILEHKE 239
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+A VL HP V+ FLH+PVQ GSD VL M REYT DF +VD L+E VP + IATDII
Sbjct: 240 AVARVLNHPRVFKFLHIPVQCGSDKVLQDMKREYTRKDFEVLVDYLLEHVPDITIATDII 299
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFP E++EDF T++L+ +YKFP V+I+QFYPRPGT AA+M K+ S VVK RSR +T+
Sbjct: 300 CGFPTESEEDFQHTMDLLDKYKFPIVNIAQFYPRPGTVAAKMPKLQSGVVKDRSRRVTAH 359
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
FE++ + + GR ER+W+ E D G GY QVL+P +LG S + ++ S
Sbjct: 360 FESYRTWDHLVGRKERVWVIEYGKDENYVVGHTAGYTQVLLPRDAKLLGRSVIAQVVSAD 419
Query: 469 RWSVFG 474
+WSV G
Sbjct: 420 KWSVKG 425
>gi|380814044|gb|AFE78896.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|383419475|gb|AFH32951.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|384947864|gb|AFI37537.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/435 (54%), Positives = 320/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF +++PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 418 KDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 477
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 478 DICESGKHFMKGQPV 492
>gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans]
gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans]
Length = 556
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/457 (53%), Positives = 324/457 (70%), Gaps = 26/457 (5%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP++H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
EEAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYVVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
QIDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
+V +P + MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL M R
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKR 342
Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
EY DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFF 402
Query: 386 PRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL--- 442
PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY G + + +TE++ D +H
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHYVGH 462
Query: 443 --GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 463 NKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499
>gi|355748266|gb|EHH52749.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
fascicularis]
Length = 576
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/435 (54%), Positives = 320/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF +++PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 418 KDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 477
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 478 DICESGKHFMKGQPV 492
>gi|395830637|ref|XP_003788426.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Otolemur garnettii]
Length = 583
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/435 (54%), Positives = 320/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVL+P + +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLIPKNSSFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYEAGKHFMKGQPV 491
>gi|410958374|ref|XP_003985794.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Felis catus]
Length = 576
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 318/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M ++P+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMAQIPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKDPTFMGKMIEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|402783747|dbj|BAM37953.1| CDK5 regulatory subunit-associated protein 1-like 1 [Felis catus]
Length = 576
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 318/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M ++P+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMAQIPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKDPTFMGKMIEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|380022483|ref|XP_003695074.1| PREDICTED: CDKAL1-like protein-like [Apis florea]
Length = 537
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/435 (56%), Positives = 316/435 (72%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N +AD+WL+N+CTVKSP++
Sbjct: 56 IPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 176 QQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTG YGRDIG +LP LL ++ E+ P+G M RIGMTNPP+
Sbjct: 236 DRAKQAFEEGVCELWLTSEDTGTYGRDIGSSLPELLWKLI-EVIPNGCRM-RIGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF VV+ L E VPG+
Sbjct: 294 ILEHLEEMSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFERVVNFLRERVPGLT 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET++DF +T+ L ++YKFP + I+QF+PRPGTPAARM KVP+ VKKR+
Sbjct: 354 IATDIICGFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMPKVPTQDVKKRT 413
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ L+ F++++PY V+ + +TEI+ D H Y QVL+P LG V
Sbjct: 414 KRLSEFFQSYSPYDNRIKLVQDVLVTEISHDKKHYVGHNKFYEQVLIPLKEEYLGKMIRV 473
Query: 463 KITSVGRWSVFGEVI 477
KI ++S+ GE I
Sbjct: 474 KIVETTKYSMKGEPI 488
>gi|426250880|ref|XP_004019161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 1 [Ovis aries]
gi|426250882|ref|XP_004019162.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 2 [Ovis aries]
gi|426250884|ref|XP_004019163.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 3 [Ovis aries]
Length = 578
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/489 (50%), Positives = 342/489 (69%), Gaps = 19/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + ++ S S IPG +
Sbjct: 10 LDDIEDIVSQEDSKPQDRHF----SRKHVVPKVRRRNTQKYLQEENRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SDAVL M REY ++DF+ VVD L + VPG+ IATDII
Sbjct: 303 EMAKILHHPRVYAFLHIPVQSASDAVLMEMKREYCVADFKRVVDFLKDKVPGITIATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+ +
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSRI 422
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F +++PY G+ +++ +TE + D + Y QVLVP +G V I G
Sbjct: 423 FHSYSPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPIFMGKMVEVDIYESG 482
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 483 KHFMKGQPV 491
>gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/489 (50%), Positives = 340/489 (69%), Gaps = 18/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ I+ GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F +++PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|410252052|gb|JAA13993.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291158|gb|JAA24179.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291160|gb|JAA24180.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/489 (50%), Positives = 339/489 (69%), Gaps = 18/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F +++PY +++ +TE + D + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIDERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Macaca mulatta]
Length = 576
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/435 (54%), Positives = 320/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF +++PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 418 KDLSWVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 477
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 478 DICESGKHFMKGQPV 492
>gi|74003946|ref|XP_849433.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Canis lupus familiaris]
gi|402783749|dbj|BAM37954.1| CDK5 regulatory subunit-associated protein 1-like 1 [Canis lupus
familiaris]
Length = 578
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/486 (50%), Positives = 330/486 (67%), Gaps = 38/486 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ +G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYFKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ +N GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
+ATDIICGFPGETD+DF +TV L+++YKFP + I+QFYPRPGTPAA+M +VP+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPAAKMVQVPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMIEV 476
Query: 463 KITSVGRWSVFGEVIK------------------------ILNQVDDKIASNRRISSQVR 498
I G+ + G+ + N+ ++S R S+ VR
Sbjct: 477 DIYESGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTEGFRNRPRSHLSSARHPSAAVR 536
Query: 499 QDKCSS 504
+D SS
Sbjct: 537 RDSASS 542
>gi|403368709|gb|EJY84195.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 642
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/400 (57%), Positives = 304/400 (76%), Gaps = 8/400 (2%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 71 NAQKFQNNVQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 130
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 131 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 190
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 191 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 250
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 251 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 308
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 309 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 368
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+
Sbjct: 369 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 428
Query: 396 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWI 432
KKVPS VKKRS +LT +F+++T Y+G E + +WI
Sbjct: 429 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWI 465
>gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster]
gi|122087244|sp|Q7K4W1.1|CDKAL_DROME RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster]
gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster]
gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct]
Length = 552
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/456 (53%), Positives = 319/456 (69%), Gaps = 26/456 (5%)
Query: 35 KNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
K KP +H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ E
Sbjct: 57 KPKPTIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKE 105
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
EAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQQ
Sbjct: 106 EADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQ 165
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGAC 206
IDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL C
Sbjct: 166 IDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQC 225
Query: 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266
TYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL +
Sbjct: 226 TYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQL 285
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
V +P MLR+GMTNPP+ILEHL+E+A VL+HP VYSFLHVPVQSGSD+VL M RE
Sbjct: 286 VEVIPE--HCMLRVGMTNPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKRE 343
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
Y DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+P
Sbjct: 344 YCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFP 403
Query: 387 RPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL---- 442
RPGTPAA+M ++P+ +VKKR++ LT +F ++ PY G + + +TE++ D +H
Sbjct: 404 RPGTPAAKMDRIPANLVKKRTKRLTDLFYSYEPYADRVGEIYTVLVTEVSHDKLHYVGHN 463
Query: 443 -GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 464 KSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499
>gi|410905177|ref|XP_003966068.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Takifugu rubripes]
Length = 613
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/427 (55%), Positives = 310/427 (72%), Gaps = 14/427 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ I+MKT+GCSHN SD EYMAGQL+A GY +TD+ EAD+WL+N+CTVK+P++
Sbjct: 53 IPGTQKIWMKTWGCSHNNSDGEYMAGQLAASGYKITDDPIEADLWLLNSCTVKNPAEDHF 112
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 113 RNSIKKAQEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 172
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 173 GQKKDGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 232
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+
Sbjct: 233 ERTRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 290
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+
Sbjct: 291 ILEHLEEMAKILSHPRVYAFLHVPVQSASDSVLMDMKREYCVGDFKRVVDFLKERVPGVT 350
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGET+EDF +T++L+K Y+FP + I+QFYPRPGTPAA+M+++P+ + K+R+
Sbjct: 351 IATDIICGFPGETEEDFQETLDLVKLYQFPSLFINQFYPRPGTPAAKMEQIPAHIKKQRT 410
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+EL+ +F ++ PY G +++ +TE + DG + Y QVLVP G V
Sbjct: 411 KELSQLFHSYHPYDHKVGERQQVLVTEESFDGQYYVAHNKFYEQVLVPKRAEFKGKMVEV 470
Query: 463 KITSVGR 469
I G+
Sbjct: 471 DIYEAGK 477
>gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus]
gi|296474090|tpg|DAA16205.1| TPA: CDK5 regulatory subunit associated protein 1-like 1 [Bos
taurus]
Length = 578
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/435 (54%), Positives = 319/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
+EL+ +F ++ PY G+ +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KELSRIFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Equus caballus]
Length = 578
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 318/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKVGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|403375394|gb|EJY87671.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/400 (57%), Positives = 304/400 (76%), Gaps = 8/400 (2%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73 NAQKFQNNIQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 370
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+
Sbjct: 371 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 430
Query: 396 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWI 432
KKVPS VKKRS +LT +F+++T Y+G E + +WI
Sbjct: 431 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWI 467
>gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Oryctolagus cuniculus]
Length = 571
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/435 (54%), Positives = 321/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKENGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL AM REY ++DF++VVD L E VPG+
Sbjct: 297 ILEHLQEMAKILNHPRVYAFLHIPVQSASDSVLMAMKREYCVADFKSVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ + K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHMKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSQVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti]
gi|108872257|gb|EAT36482.1| AAEL011435-PA [Aedes aegypti]
Length = 558
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/451 (54%), Positives = 320/451 (70%), Gaps = 16/451 (3%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
D + + L IPGT++IY+KT+GC+HN SDSEYMAGQL+++GY +T + +AD+WL+
Sbjct: 49 DAAVPEKSVLESVIPGTQSIYLKTWGCAHNNSDSEYMAGQLASYGYNITSDKSDADLWLL 108
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEV 161
N+CTVK+PS+ I K +V+AGCVPQ + + G+SIVGV QIDRV EV
Sbjct: 109 NSCTVKNPSEDTFRNEIQAANKMGKHVVLAGCVPQAAPKSDYMHGLSIVGVHQIDRVTEV 168
Query: 162 VEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
VEETLKGH VRLL KKL P L LPKVR+N +EI+PIN GCL ACTYCKTK A
Sbjct: 169 VEETLKGHSVRLLQAKKLNGKRVAGPQLALPKVRKNPLIEIIPINSGCLNACTYCKTKFA 228
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274
R L SY VE +V R V +GV E+WL+SEDTG YGRDIG +LP LL +VA +P DG
Sbjct: 229 RADLVSYPVEEIVQRAAHVFTEGVCEIWLTSEDTGTYGRDIGTSLPELLWQLVAVIP-DG 287
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
MLR+GMTNPP+ILEHL+E+A++L HP VYSFLHVP+QSGSD+VLS M REY SDF
Sbjct: 288 C-MLRLGMTNPPYILEHLEEMAKILVHPKVYSFLHVPIQSGSDSVLSDMKREYCRSDFEQ 346
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
+VD L + VPG+ IATDIICGFP ET+EDF T+ L ++YKFP + I+QFYPRPGTPAA+
Sbjct: 347 IVDFLNDKVPGITIATDIICGFPTETEEDFEHTMTLCEKYKFPSLFINQFYPRPGTPAAK 406
Query: 395 MKKVPSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL-----GYVQV 447
M+++P+ VK R++ LT +F + PY+G + G +++ +TEI+ D H Y QV
Sbjct: 407 MQRIPADQVKVRTKRLTDLFYTYEPYVGKYVLGDRQKVLVTEISHDKKHYVGHNKCYEQV 466
Query: 448 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478
L+P N+LG V+I + ++S+ +V++
Sbjct: 467 LLPMDKNLLGKLVEVEIVGITKFSMLAKVVQ 497
>gi|350586429|ref|XP_003128247.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Sus
scrofa]
Length = 578
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/489 (50%), Positives = 336/489 (68%), Gaps = 19/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ S P V + + L D + + S IPG +
Sbjct: 10 LDDIEDIV--SQEDSKPQDRHFARKQVVPKVRRRNTQKYLQDENSPPSDST---IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 422
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F ++ PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYESG 482
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 483 KHFMKGQPV 491
>gi|403270819|ref|XP_003927359.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Saimiri boliviensis boliviensis]
Length = 578
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 319/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYLIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF +++PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G +
Sbjct: 477 DIYESGKHFMKGRPV 491
>gi|403356675|gb|EJY77936.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/400 (57%), Positives = 304/400 (76%), Gaps = 8/400 (2%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + +++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73 NAQKFQNNIQDQPFEQNEKVPGAQKVFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 370
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+
Sbjct: 371 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 430
Query: 396 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWI 432
KKVPS VKKRS +LT +F+++T Y+G E + +WI
Sbjct: 431 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWI 467
>gi|344289532|ref|XP_003416496.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Loxodonta africana]
Length = 578
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 319/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+ + +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITEKASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M+++P+ V K+R+
Sbjct: 357 VATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQIPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE++ D + Y QVLVP + +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEVSFDSKFYVAHNRFYEQVLVPKNPSFMGKMVKV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila]
gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila SB210]
Length = 574
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/494 (49%), Positives = 333/494 (67%), Gaps = 32/494 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGV----------NPKYNKNKPRLHDNHLSKTGS 50
+ DIED++AG R+ + PK + + D+ +
Sbjct: 6 LADIEDVIAGDVADDFIQKDRVKDRNIKKRPKKVKKVEEEPKQEELQEPEDDDEIKFDMP 65
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
++ ++PGT+ +Y+KTFGCSHN SDSE+M GQL+ +GY L + ++A + L+N+CTVK+PS
Sbjct: 66 VNNQVPGTQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLCSDPKDAHLILVNSCTVKNPS 125
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
Q A T++ K KKP+VVAGCVPQG R++ LE VS++G+ QIDRVVEVVEETLKG++
Sbjct: 126 QDAFMTIVKTYKHKKKPIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVVEETLKGNK 185
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
VRL +K LP+LDLPK+R CLG+CTYCKTKHARG LGSY E++V RV
Sbjct: 186 VRLYGKKTLPSLDLPKIR-------------CLGSCTYCKTKHARGKLGSYQPEAIVNRV 232
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+TV +GVKE+WL+SEDTGAYGRDIG ++ LL IV LP D MLR+GMTNPP+ILE
Sbjct: 233 KTVCEEGVKEIWLTSEDTGAYGRDIGTDISQLLRLIVEVLPND--VMLRVGMTNPPYILE 290
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
HL+ ++ +LRHP V+SFLH+PVQ+ ++ VL MNREYT +F V D L++ VP M IAT
Sbjct: 291 HLQNMSTILRHPRVFSFLHIPVQAANNTVLENMNREYTCEEFEQVCDYLLKNVPNMTIAT 350
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
DIICGFPGET+ F+ T+ L+ +YKFP ++ISQFYPRPGT A +MKKVPS VK RS+++
Sbjct: 351 DIICGFPGETNAQFDDTLKLVDKYKFPILNISQFYPRPGTAAMKMKKVPSQDVKMRSKKI 410
Query: 411 TSVFEAFTPYLGMEGRVERIWITE-------IAADGIHLGYVQVLVPSTGNMLGTSALVK 463
T +F+ F + + G +RIWI + + G Y +V++P +LG S ++K
Sbjct: 411 TELFDTFKRWDHLLGTTQRIWINDKEDKKGVLQLVGHTKQYAKVMLPFEEELLGKSVIIK 470
Query: 464 ITSVGRWSVFGEVI 477
+T V W + GE+I
Sbjct: 471 VTKVLTWHIEGEII 484
>gi|349604029|gb|AEP99693.1| CDK5 regulatory subunit-associated protein 1-like 1-like protein
[Equus caballus]
Length = 578
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 318/435 (73%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKTQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPRIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFREGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKVGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST]
gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 256/492 (52%), Positives = 335/492 (68%), Gaps = 22/492 (4%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK---NKPRLHDNHLSKTGSLSPKIPGTE 59
DIEDL+ S +P L V V K K N+P+ + + L IP T+
Sbjct: 11 DIEDLI--SLDDPSPAERYLNKKDVTVRTKRVKVRANRPK--ETSTVEKPLLDSVIPETQ 66
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+CTVK+PS+ I
Sbjct: 67 HIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCTVKNPSEDTFRNEIE 126
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A K +VVAGCVPQ + L+G+S+VGVQQIDRV EVVEETLKGH VRLL KK+
Sbjct: 127 AAHQAGKHVVVAGCVPQAAPRSDYLKGLSVVGVQQIDRVAEVVEETLKGHSVRLLQAKKV 186
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
P L LPKVR+N +E++PIN GCL ACTYCKTK AR L SY V+ +V R +
Sbjct: 187 DGRKVAGPKLALPKVRKNPLIEVIPINSGCLNACTYCKTKFARADLVSYPVQEIVDRAQQ 246
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
V DGV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G M+R+GMTNPP+ILEHL
Sbjct: 247 VFQDGVCEIWLTSEDTGTYGRDIGSSLPELLWQLV-EVIPEGC-MMRLGMTNPPYILEHL 304
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+A++L HP VYSFLH+PVQSGSDA+L M REY + DF +VD L VPG+ IATDI
Sbjct: 305 DEMAKILSHPRVYSFLHIPVQSGSDAILGEMRREYCVKDFERMVDFLRAQVPGITIATDI 364
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFPGET+ DF+ T+ L ++Y+FP + I+QF+PRPGTPAA+M KVP+ VK R++ LT
Sbjct: 365 ICGFPGETEADFDDTLALCEKYQFPSLFINQFFPRPGTPAAKMTKVPANEVKTRTKRLTD 424
Query: 413 VFEAFTPYLGME-GRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITS 466
+F ++ PY E G + + +TEI+ D H Y Q+L+P N+LG V+IT
Sbjct: 425 LFHSYEPYKKYEAGTKQTVLVTEISHDRKHFVGHNKFYEQILLPMHNNLLGKQVEVEITG 484
Query: 467 VGRWSVFGEVIK 478
++S+FG+VI+
Sbjct: 485 CTKFSMFGKVIQ 496
>gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex]
Length = 560
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/495 (52%), Positives = 340/495 (68%), Gaps = 28/495 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------ 54
++DIED++ G G A NAVG K K P D +KT + PK
Sbjct: 7 LDDIEDIV-GEGDLTALERSVARSNAVG---KRVKKTPNNKDP--AKTNKVIPKVEENGS 60
Query: 55 -IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
IPGT+ I++KT+GC+HN SDSEYMAGQL+A+GY+LTD EAD+WL+N+CTVK+P++
Sbjct: 61 IIPGTQKIWVKTWGCAHNNSDSEYMAGQLAAYGYSLTDEKYEADLWLLNSCTVKTPAEDH 120
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I ++ P+VVAGCVPQG L+G+SI+GVQQIDRVVEVVEETLKGH VRL
Sbjct: 121 FKNEIDDGRARGTPVVVAGCVPQGQPKANYLQGLSIIGVQQIDRVVEVVEETLKGHSVRL 180
Query: 174 LHRKKLP--------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
L KK +L LPK+R+N +EI+PIN GCL CTYCKTKHARG LGSY E
Sbjct: 181 LGTKKDAEKKKTGGASLLLPKIRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEE 240
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V R +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG MLR+GMTNP
Sbjct: 241 IVARAIQSFQEGVCEIWLTSEDTGAYGRDIGSSLPELLRQLV-QVIPDG-CMLRLGMTNP 298
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
P+ILEHL+ IAE+L HP VY+FLH+PVQSGSD VL+ M REY ++DF VV+ L E VPG
Sbjct: 299 PYILEHLEAIAEILNHPRVYAFLHLPVQSGSDCVLTDMKREYCVADFERVVNFLRERVPG 358
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
+ IATDIICGFP ET++DF+ T+ L +++FP + I+QF+PR GTPA RM++VP+ VK
Sbjct: 359 ISIATDIICGFPTETEQDFDLTMELCSKHRFPSLFINQFFPRVGTPAYRMERVPTKQVKN 418
Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSA 460
R++ L+ +F+++ PY G+ + + +T+I+ D G + YVQVLVP N +G
Sbjct: 419 RTKRLSELFKSYQPYDDQVGQRQSVLVTDISHDKNYYVGHNKEYVQVLVPMEPNYMGKMV 478
Query: 461 LVKITSVGRWSVFGE 475
V ITS ++S+ E
Sbjct: 479 EVLITSASKFSLMSE 493
>gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
1-like 1 [Ciona intestinalis]
Length = 516
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/441 (54%), Positives = 319/441 (72%), Gaps = 15/441 (3%)
Query: 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKS 108
++ IP T+TI++KT+GC+HN SDSEYMAGQL+++GY +T+N + AD+WL+N+CTVK+
Sbjct: 55 TIQSNIPATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADLWLLNSCTVKN 114
Query: 109 PSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
P++ +I+K +S K +V+AGCV QG+ ++G+SI+GVQQIDRVVEVVEETLKG
Sbjct: 115 PAEDHFRNMISKAQSLNKQVVLAGCVSQGAPKQSYIQGLSIIGVQQIDRVVEVVEETLKG 174
Query: 169 HEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ VRLL +KK +LDLPK+RRN F+EI+ IN GCL +CTYCKTKHARG+LGSY
Sbjct: 175 NTVRLLKQKKENGRKIGGASLDLPKIRRNPFIEIISINTGCLNSCTYCKTKHARGNLGSY 234
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
V +V R +GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+G
Sbjct: 235 PVAEIVQRAIQSFGEGVVEIWLTSEDTGAYGRDIGTSLPELLWELVKVIPV--GCMLRVG 292
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
MTNPP+IL+HL+E+ ++L HP VYSFLHVPVQSGSD L M REYT SDF VVDTL
Sbjct: 293 MTNPPYILDHLEEMGKILNHPNVYSFLHVPVQSGSDQTLHEMRREYTASDFELVVDTLRA 352
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
VPG+ IATDIICGFP ETDEDF T+ L ++YKFP + I+QF+PRPGTPAARM ++
Sbjct: 353 SVPGISIATDIICGFPTETDEDFEDTMTLCEKYKFPSLFINQFFPRPGTPAARMPQIHRQ 412
Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNML 456
+KKR++ L+ +F ++ PY G+++++ +TEIA D IH Y QVL+P ++
Sbjct: 413 EIKKRTKRLSELFRSYEPYGHQLGKIQKVLVTEIAHDQIHYVGHNKYYEQVLIPMDEDLT 472
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G V+I G+ + G+ I
Sbjct: 473 GKMFEVEIVETGKHFLKGKRI 493
>gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta]
gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta]
Length = 557
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/436 (55%), Positives = 314/436 (72%), Gaps = 16/436 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNEIKLGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLL 186
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N+ +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 187 QNKKKVHGRRVAGAPLSLPKVRKNQLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 247 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 364
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATDIICGFP ET+ DF +T+ L +Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR
Sbjct: 365 TIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKR 424
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSAL 461
++ LT +F ++ PY G + + +TE++ D +H Y QVL+P N+LGT
Sbjct: 425 TKRLTDLFYSYEPYAKRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVH 484
Query: 462 VKITSVGRWSVFGEVI 477
V+ITS ++S+ GE++
Sbjct: 485 VRITSASKFSMVGEIL 500
>gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 578
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 317/435 (72%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFLKGQPV 491
>gi|392333847|ref|XP_003753012.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 520
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 317/435 (72%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFLKGQPV 491
>gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Saccoglossus kowalevskii]
Length = 544
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 241/446 (54%), Positives = 321/446 (71%), Gaps = 14/446 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG +++Y+KT+GCSHN SDSEYMAGQL+++GY +T+ E AD+WL+N+CTVK+P++
Sbjct: 46 IPGCQSVYVKTWGCSHNNSDSEYMAGQLASYGYKITETEEAADLWLLNSCTVKTPAEQHF 105
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L + GVS+VGVQQIDR+VEVVEET KGH VRL
Sbjct: 106 QNSIIKAREQNKYMVLAGCVPQAQPKLDYINGVSVVGVQQIDRIVEVVEETFKGHTVRLF 165
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK L+LPK+R+N +EI+ IN GCL ACTYCKTK+ARG LGSY LV
Sbjct: 166 GQKKKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACTYCKTKYARGELGSYQPSELV 225
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYG+DIGV + LL +V E+ PDG M+RIGMTNPP+
Sbjct: 226 ARAKQSFEEGVCELWLTSEDTGAYGKDIGVTIVELLWQLV-EVIPDGC-MMRIGMTNPPY 283
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+EI+++L+HP VYSFLHVPVQSGSD+VL M REY + DF+ V + L + VPG+
Sbjct: 284 ILEHLEEISKILKHPRVYSFLHVPVQSGSDSVLMDMKREYCVDDFKHVCNFLKKRVPGVT 343
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ETDEDF++T+ L++EYKFP + I+Q++PRPGTP+A+M +VP+ VKKR+
Sbjct: 344 IATDIICGFPTETDEDFDETMQLVEEYKFPSLFINQYFPRPGTPSAKMTRVPTREVKKRT 403
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
++L+ +F+ + PY G + + +TE + DG Y QVLVP N+LG V
Sbjct: 404 KKLSQLFQDYRPYDHKVGEEQHVLVTEDSHDGRFYVAHNKFYDQVLVPKEENLLGKMIKV 463
Query: 463 KITSVGRWSVFGEVIKILNQVDDKIA 488
KITS G+ + G+++K V IA
Sbjct: 464 KITSTGKHYLIGDILKDEETVTPSIA 489
>gi|395511895|ref|XP_003760186.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Sarcophilus harrisii]
Length = 577
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/435 (54%), Positives = 317/435 (72%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKQVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF T+ L+++YKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQDTMKLVEDYKFPSLFINQFYPRPGTPAAKMQQVPAHVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ +F ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPMFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus]
gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d
[Mus musculus]
Length = 520
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/489 (50%), Positives = 338/489 (69%), Gaps = 19/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRV 422
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F ++ PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESG 482
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 483 KHFLKGQPV 491
>gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase [Callithrix jacchus]
Length = 579
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/489 (50%), Positives = 338/489 (69%), Gaps = 18/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LEDIEDIVSQED---SKPQERHFVRR-DVVPKARRRNTQKYLQEEEDSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+A CVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAVCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLHVPVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHVPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRTKDLSRV 423
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F +++PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYHHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 469 RWSVFGEVI 477
+ + G +
Sbjct: 484 KHFMKGRPV 492
>gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta]
Length = 538
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 253/489 (51%), Positives = 335/489 (68%), Gaps = 22/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + V PK K + +S+ LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYSSRKHITVRPKRRKQE------QVSQPSVLSSVIPGTQT 60
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SD+EYMAGQL+ +GY LT++ +AD+WL+N+CTVK+P++ I
Sbjct: 61 IYVKTWGCTHNSSDTEYMAGQLATYGYNLTEDKLKADLWLLNSCTVKNPAEDQFRNEIEH 120
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K+ K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 121 GKNIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLKQKKDS 180
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 181 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 240
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V ++ PDG M+R+GMTNPP+ILEHL
Sbjct: 241 FEEGVCELWLTSEDTGAYGRDIGTNLPELLWQLV-DVIPDGC-MMRVGMTNPPYILEHLD 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L+HP VYSFLH+PVQSGSD VL+ M REYT ++F VV+ L E VPG+ IATDII
Sbjct: 299 EMAKILQHPRVYSFLHIPVQSGSDQVLADMKREYTRAEFEHVVNFLSERVPGLTIATDII 358
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFP ET+ DF +T+ L ++YKFP + I+Q++PRPGTPAARM KVP+ VK R++ L+
Sbjct: 359 CGFPTETEMDFEETMTLCQKYKFPSLFINQYFPRPGTPAARMLKVPAQKVKARTKRLSEF 418
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
F+++ Y G +++ +TE++ D H Y QVL+P +G VKI
Sbjct: 419 FQSYELYGHKVGLQQKVLVTEVSHDKQHYVGHNKFYEQVLIPMKQEYMGKMIDVKIKEAT 478
Query: 469 RWSVFGEVI 477
++S+ GE I
Sbjct: 479 KFSMKGEPI 487
>gi|21617853|ref|NP_653119.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Mus
musculus]
gi|81879575|sp|Q91WE6.1|CDKAL_MOUSE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Mus musculus]
Length = 578
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/489 (50%), Positives = 338/489 (69%), Gaps = 19/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRV 422
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
F ++ PY G +++ +TE + D + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESG 482
Query: 469 RWSVFGEVI 477
+ + G+ +
Sbjct: 483 KHFLKGQPV 491
>gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
Length = 562
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 305/427 (71%), Gaps = 14/427 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A GY +T++ EAD+WL+N+CTVK+P++
Sbjct: 55 IPGMQKIWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDHF 114
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 115 RNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 174
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV
Sbjct: 175 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELV 234
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +GV E+WL+SEDTGAYG+DIG +LP LL +V E+P MLR+GMTNPP+
Sbjct: 235 ERARQSFQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 292
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E++++L HP VY+FLHVPVQS SD+VL M REY DFR V D L + VPG+
Sbjct: 293 ILEHLEEMSKILNHPRVYAFLHVPVQSASDSVLMDMKREYCADDFRRVADFLKDKVPGIT 352
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD DF +T +L+KEY+FP + I+QFYPRPGTPAA+M +VP+ + K+R+
Sbjct: 353 IATDIICGFPGETDADFQETCDLVKEYRFPSLFINQFYPRPGTPAAKMDQVPAQLKKQRT 412
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+EL+++F ++ PY G +++ +TE + D + Y QVLVP G V
Sbjct: 413 KELSALFHSYNPYHHKIGETQQVLVTEESFDAQYYVAHNKYYEQVLVPKRSEFKGKMIEV 472
Query: 463 KITSVGR 469
+I G+
Sbjct: 473 EIFEAGK 479
>gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator]
Length = 542
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/441 (54%), Positives = 316/441 (71%), Gaps = 15/441 (3%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
LS IPGT+T+Y+KT+GC+HN SD+EYMAGQL+A GY L D+ +AD+WL+N+CTVK+P+
Sbjct: 46 LSSIIPGTQTVYVKTWGCTHNSSDAEYMAGQLAAQGYNLIDDKLKADLWLLNSCTVKNPA 105
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
+ I + A K +VVAGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKGH
Sbjct: 106 EDQFRNEIENGRKAGKHIVVAGCVPQGAPKSPFLKGLSIIGVQQIDRVVEVVEETLKGHT 165
Query: 171 VRLLHRKKLPA--------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
VR L KK L+LPK+R+N +EI+ I+ GCL CTYCKTKHARG LGSY
Sbjct: 166 VRFLRTKKNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLNQCTYCKTKHARGQLGSYP 225
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ +V R +GV E+W++SEDTGAYGRDIG NLP LL +V +P S M+RIGM
Sbjct: 226 PDEIVARALQAFEEGVCELWITSEDTGAYGRDIGTNLPELLWKLVDVIP--ESCMMRIGM 283
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
TNPP+ILEHL EIA++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF VV+ L E
Sbjct: 284 TNPPYILEHLDEIAKILRHPKVYSFLHIPVQSGSDQVLADMKREYTRADFEHVVNYLRER 343
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
VP + IATDIICGFP ET+E+F +T+ L ++YKFP + I+QF+PRPGTPAARM ++P+
Sbjct: 344 VPDLTIATDIICGFPSETEENFEETLTLCRKYKFPSLFINQFFPRPGTPAARMPRIPTQQ 403
Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLG 457
VK R+++LT +F ++ PY G++ + +TE+A D +H Y QVL+P +G
Sbjct: 404 VKARTKKLTELFYSYEPYENQVGKLCCVLVTEVAHDKLHYVGHNKFYGQVLLPKEEEYMG 463
Query: 458 TSALVKITSVGRWSVFGEVIK 478
LV+IT ++S+ E ++
Sbjct: 464 MMILVRITEATKFSMKAEYVE 484
>gi|425893217|gb|AFY09824.1| CDK5 regulatory subunit associated protein 1-like 1 [Rattus
norvegicus]
Length = 578
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/435 (54%), Positives = 316/435 (72%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+G QQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGAQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGGRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFLKGQPV 491
>gi|334325985|ref|XP_001375874.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Monodelphis domestica]
Length = 579
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 317/435 (72%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGLT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF T+ L+++YKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQDTLKLVEDYKFPSLFINQFYPRPGTPAAKIQQVPAHVKKQRT 416
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ +F ++ PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 417 KDLSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPMFMGKMVEV 476
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior]
Length = 539
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/489 (51%), Positives = 333/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + + PK K +S+ LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYNSRKHITIRPKRRKQL----QEEVSQPSILSSIIPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SD+EYM GQL+++GY LT++ +AD+WL+N+CTVKSP++ I
Sbjct: 63 IYVKTWGCTHNSSDTEYMTGQLASYGYNLTEDKLKADLWLLNSCTVKSPAEDQFRNEIEY 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 123 GKKIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLQQKKDL 182
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L+LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 GKKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 242
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL ++ ++ PDG M+RIGMTNPP+ILEHL
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTNLPKLLWQLI-DVIPDGC-MMRIGMTNPPYILEHLD 300
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ ++LRH VYSFLH+PVQSGSD VL+ M REYT ++F VV+ L E VPG+ IATDII
Sbjct: 301 EMTKILRHSKVYSFLHIPVQSGSDHVLADMKREYTCAEFEHVVNFLSERVPGLTIATDII 360
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFP ET+ DF +T+ L ++YKFP + I+QF+ RPGTPAARM KVP+ VK R++ L+
Sbjct: 361 CGFPTETEMDFEETMTLCQKYKFPSLFINQFFSRPGTPAARMPKVPAQKVKTRTKRLSEF 420
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
F+++ PY G ++++ +TE++ D H Y QVL+P +G V+I
Sbjct: 421 FQSYEPYGHKVGLIQKVLVTEVSHDKQHYVGHNKFYEQVLIPLKQGYMGKMIDVRIIEAT 480
Query: 469 RWSVFGEVI 477
++S+ G+ I
Sbjct: 481 KFSMKGDPI 489
>gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum]
Length = 545
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/433 (55%), Positives = 310/433 (71%), Gaps = 14/433 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+CTVK+P++
Sbjct: 64 IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 123
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 124 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 183
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 184 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 243
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+
Sbjct: 244 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 301
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS M REY DF VVD L +PGM
Sbjct: 302 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMT 361
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET++DF T++L ++YKFP + I+QF+PRPGTPAA + ++P+ VK R+
Sbjct: 362 IATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAALLPRIPAQEVKGRT 421
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ LT +F ++ PY G V+ + +TE++ D H Y QVLVP +G V
Sbjct: 422 KRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFYEQVLVPKDEKYMGKLVTV 481
Query: 463 KITSVGRWSVFGE 475
KI S ++S+ GE
Sbjct: 482 KIVSATKFSMTGE 494
>gi|443735052|gb|ELU18907.1| hypothetical protein CAPTEDRAFT_20043 [Capitella teleta]
Length = 561
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/489 (50%), Positives = 333/489 (68%), Gaps = 18/489 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK-NKPRLHDNHLSKTGSLSPKIPGTE 59
++DIED+ + + G R + A + +K N P S+ IPGT+
Sbjct: 12 IDDIEDIFSKTSEGIPREKVRKHVVARARKQRASKRNAPEASQVQHPLADSV---IPGTQ 68
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY+KT+GC+HN SD EYMAGQL+A+GY +T++ + A +WL+N+CTVK+P++ I
Sbjct: 69 NIYVKTWGCAHNSSDGEYMAGQLAAYGYTITEDKDSAHLWLLNSCTVKNPAEDHFRNEIT 128
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K K +V++GCVPQG+ ++G+S++GV QIDRVVEVVEETLKG+ VRL +KK
Sbjct: 129 KAKEQGKYVVISGCVPQGAPRASYIQGLSVIGVHQIDRVVEVVEETLKGNAVRLFGQKKE 188
Query: 180 P-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
AL LPK+RRN +EI+ IN GCL ACTYCKTKHARG LGSY +E +V R +
Sbjct: 189 AGKKLGGAALSLPKIRRNPLIEIIAINTGCLNACTYCKTKHARGELGSYPIEQIVNRAKQ 248
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SED GAYG DIGV LP LL +V E PDG+ M+R+GMTNPP+ILEHL
Sbjct: 249 SFEEGVVEIWLTSEDLGAYGIDIGVTLPQLLWQLV-ETIPDGA-MMRLGMTNPPYILEHL 306
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+E+A++L+HP VYSFLHVPVQSGSDAVL M REY +DF VVD L E VP + +ATDI
Sbjct: 307 EEMAKILKHPRVYSFLHVPVQSGSDAVLGDMKREYCRADFMHVVDFLKERVPNITVATDI 366
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFP ET+EDF++T+ L+++Y FP + I+QF+PRPGTPAA+M+++P VKKRS++LT
Sbjct: 367 ICGFPTETEEDFDETMTLVEKYHFPSLFINQFFPRPGTPAAKMERIPPPQVKKRSKQLTE 426
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSV 467
+F ++ Y G+ + + +TEI+ DG + Y QVLVP ++G V I
Sbjct: 427 LFHSYQTYGNQVGQTQTVLVTEISHDGNYFVGHNKHYDQVLVPKETELIGKCVDVVIVEA 486
Query: 468 GRWSVFGEV 476
G+ + E+
Sbjct: 487 GKHFMKAEL 495
>gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum]
Length = 548
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/433 (55%), Positives = 310/433 (71%), Gaps = 14/433 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+CTVK+P++
Sbjct: 67 IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 187 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+
Sbjct: 247 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS M REY DF VVD L +PGM
Sbjct: 305 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMT 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET++DF T++L ++YKFP + I+QF+PRPGTPAA + ++P+ VK R+
Sbjct: 365 IATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAALLPRIPAQEVKGRT 424
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ LT +F ++ PY G V+ + +TE++ D H Y QVLVP +G V
Sbjct: 425 KRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFYEQVLVPKDEKYMGKLVTV 484
Query: 463 KITSVGRWSVFGE 475
KI S ++S+ GE
Sbjct: 485 KIVSATKFSMTGE 497
>gi|350422581|ref|XP_003493215.1| PREDICTED: CDKAL1-like protein-like [Bombus impatiens]
Length = 540
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 312/435 (71%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N EAD+WL+N+CTVKSP++
Sbjct: 56 VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKSPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 176 QQKKEAGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTG YGRDIG +LP LL A+V ++ PDG +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWALV-KVVPDGCR-VRVGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILE+L+E++++L HP VYSFLH+PVQSGSD VL+ M REYT DF VV+ L E VP +
Sbjct: 294 ILEYLEEMSKILSHPKVYSFLHIPVQSGSDQVLADMKREYTRGDFERVVNFLRERVPELT 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET++DF +T+ L ++YKFP + ++QF+PRPGTPAARM ++P+ +VK R+
Sbjct: 354 IATDIICGFPTETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTRIPTQIVKNRT 413
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ L+ F+++ PY G V+ + +TEI+ D H Y QVL+P LG V
Sbjct: 414 KRLSEFFQSYFPYFDRIGLVQEVLVTEISHDRKHYVGHNKSYEQVLLPLKEEYLGKIVRV 473
Query: 463 KITSVGRWSVFGEVI 477
KI ++S+ GE I
Sbjct: 474 KIVETTKYSMKGEPI 488
>gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi]
Length = 526
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/437 (54%), Positives = 313/437 (71%), Gaps = 15/437 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+ IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+CTVK+PS+
Sbjct: 62 IPETQQIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKKAADLWVLNSCTVKNPSEDTF 121
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I A K +VVAGCVPQ + L G+S+VGVQQIDRV EVVEETLKGH VRLL
Sbjct: 122 RNEIEAAHRAGKHVVVAGCVPQAAPRSDYLHGLSVVGVQQIDRVAEVVEETLKGHSVRLL 181
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ P L LPKVR+N +E++PIN GCL +CTYCKTK AR L SY V+ +V
Sbjct: 182 QAKKVNGRKVAGPKLALPKVRKNPLIEVIPINSGCLNSCTYCKTKFARADLVSYPVQEIV 241
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + V +GV E+WL+SEDTG YGRDI +LP LL +V E+ P+G M+R+GMTNPP+
Sbjct: 242 ERAQQVFEEGVCEIWLTSEDTGTYGRDIDSSLPELLWKLV-EVIPEGC-MMRLGMTNPPY 299
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL HP VYSFLH+PVQSGSD +L M REY + +F VVD L E VPG+
Sbjct: 300 ILEHLEEMAKVLAHPRVYSFLHIPVQSGSDTILGEMKREYCVQEFERVVDFLREKVPGIT 359
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGET+ DF TV L K+Y+FP + I+QF+PRPGTPAA+M++VP+ VK R+
Sbjct: 360 IATDIICGFPGETETDFQGTVALCKKYEFPSLFINQFFPRPGTPAAKMERVPANEVKTRT 419
Query: 408 RELTSVFEAFTPYLGME-GRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSAL 461
+ LT +F ++ PY G ++ + +TEI+ D H Y QVL+P N+LG
Sbjct: 420 KRLTDLFHSYEPYKKYTPGTIQTVLVTEISHDRKHYVGHNKFYEQVLLPMHNNLLGKQVE 479
Query: 462 VKITSVGRWSVFGEVIK 478
V+IT ++S+FG+V++
Sbjct: 480 VEITGCTKFSMFGKVLQ 496
>gi|41055309|ref|NP_956921.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Danio rerio]
gi|82187245|sp|Q6PG34.1|CDKAL_DANRE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio]
Length = 547
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/450 (52%), Positives = 316/450 (70%), Gaps = 14/450 (3%)
Query: 37 KPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
+ R H + IPG + +++KT+GCSHN SD EYMAGQL+ GY +T++S +A
Sbjct: 37 RARKHKQETGEQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDA 96
Query: 97 DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID 156
D+WL+N+CTVKSP++ I K + K +V+AGCVPQ + ++ +SI+GVQQID
Sbjct: 97 DLWLLNSCTVKSPAEDHFRNAIRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQID 156
Query: 157 RVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYC 209
RVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYC
Sbjct: 157 RVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYC 216
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269
KTKHARG L SY VE LV RVR +GV E+WL+SEDTGAYGRDIG +LP LL +V E
Sbjct: 217 KTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEE 276
Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL 329
+P +G+ MLR+GMTNPP+ILEHL+E++ +L+HP V+SFLHVP+QS SD+VL M REY
Sbjct: 277 IP-EGA-MLRLGMTNPPYILEHLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREYCC 334
Query: 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+DF +VD L E VPG+ IATDIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPRPG
Sbjct: 335 ADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPRPG 394
Query: 390 TPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GY 444
TPAA M+++P+ V K+R++EL+++F ++ PY G +++ +TE + D + Y
Sbjct: 395 TPAALMQQLPAHVKKQRTKELSALFHSYRPYDHKMGEQQQVLVTEESFDSQYYVAHNKFY 454
Query: 445 VQVLVPSTGNMLGTSALVKITSVGRWSVFG 474
QVLVP LG V++ G+ + G
Sbjct: 455 EQVLVPKRPEYLGKMVQVEVYECGKHYMKG 484
>gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis]
gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis]
Length = 554
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/435 (56%), Positives = 316/435 (72%), Gaps = 15/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ + +EAD+WL+N+CTVK+PS+
Sbjct: 70 IPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-SKDEADLWLLNSCTVKNPSEDTF 128
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+SI+GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSIIGVQQIDRVVEVVEETLKGHSVRLL 188
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +V
Sbjct: 189 QNKKVQGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEIV 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLT 366
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+EDF +T++L K+Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 367 IATDIICGFPTETEEDFEETMSLCKKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 426
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ LT +F ++ PY G EG+V + +TEI+ D +H Y QVL+P N+LGT V
Sbjct: 427 KRLTDLFYSYEPYAGREGQVYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRV 486
Query: 463 KITSVGRWSVFGEVI 477
+IT ++S+ E++
Sbjct: 487 RITGTSKFSMMAEIL 501
>gi|391334616|ref|XP_003741698.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Metaseiulus occidentalis]
Length = 521
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/490 (50%), Positives = 328/490 (66%), Gaps = 26/490 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL G+ P G +P + P K+K H + +PG +
Sbjct: 14 VDDIEDLDFGNFPRPEPRGQVVP-KIIRKAP--TKDKEEFHGDSF---------VPGHQK 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GCSHN SDSEYM G LSA GY + N +EA +WL+N+CTVK+PS+ + I
Sbjct: 62 IYVKTWGCSHNSSDSEYMGGMLSAAGYPIVSNKDEASLWLLNSCTVKNPSEEHLKNSIRS 121
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S K +VV GCV Q + L+G+SIVG QIDRVVEVVEETLKG+ VRLL K +
Sbjct: 122 ALSQNKKVVVTGCVSQAEPKAEFLQGLSIVGTHQIDRVVEVVEETLKGNSVRLLGAKSVK 181
Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LPK+R+N VEIL IN GCL CTYCKTK ARG+LGSY +E +V R +
Sbjct: 182 GKKQGGAKLSLPKIRKNPLVEILAINTGCLNHCTYCKTKMARGNLGSYPIEDIVERCKQS 241
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GVKE+W++SEDTGAYGRDIG+ LP LL +V +P LR+GMTNPP+I++HL+
Sbjct: 242 FQEGVKEIWMTSEDTGAYGRDIGLTLPELLREVVKVIPE--GCYLRLGMTNPPYIMDHLE 299
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
++AE+L HP VYSFLH+PVQSGSD VL M REYT F VVD L + VPG+ IATDII
Sbjct: 300 DMAEILSHPRVYSFLHIPVQSGSDPVLKEMRREYTREQFCQVVDFLRDRVPGITIATDII 359
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFP ET+EDF+ T++L +Y+FP ++I+QFYPRPGTPAA++K++P+ +VK R+R LT +
Sbjct: 360 CGFPTETEEDFDDTMSLCAKYEFPSLYINQFYPRPGTPAAKLKRIPTEIVKHRTRRLTQL 419
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVG 468
F++++PY G+ I +TEIAAD HL Y Q+LVP +LG++ V+I G
Sbjct: 420 FDSYSPYKDRIGKEYDILVTEIAADKTHLVGHNKFYEQILVPQRAGLLGSTVRVRIEEYG 479
Query: 469 RWSVFGEVIK 478
+ + G +++
Sbjct: 480 KHFMRGRILE 489
>gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
gi|121988829|sp|Q291H5.1|CDKAL_DROPS RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
Length = 553
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/435 (56%), Positives = 316/435 (72%), Gaps = 15/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ LT +F ++ PY G + + +TEI+ D +H Y QVL+P N+LGT V
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHV 484
Query: 463 KITSVGRWSVFGEVI 477
+ITSV ++S+ GE++
Sbjct: 485 RITSVSKFSMVGEIL 499
>gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis]
gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis]
Length = 553
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/435 (56%), Positives = 316/435 (72%), Gaps = 15/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ LT +F ++ PY G + + +TEI+ D +H Y QVL+P N+LGT V
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHV 484
Query: 463 KITSVGRWSVFGEVI 477
+ITSV ++S+ GE++
Sbjct: 485 RITSVSKFSMVGEIL 499
>gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 446
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/443 (54%), Positives = 313/443 (70%), Gaps = 22/443 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNS--EEADIWLINTCTVKSPSQ 111
+PG ++++KT+GC HN SD EYMAG L+A GY + D+S EEA +W++N+CTVK PSQ
Sbjct: 1 LPGQASVFVKTWGCGHNNSDGEYMAGLLAADGYNVILDHSKAEEAQVWVLNSCTVKGPSQ 60
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
I K K A K +VVAGCVPQ S E +G+S++GVQQID+VV VVEETLKG+ +
Sbjct: 61 QTFVNDIDKGKLAGKKIVVAGCVPQASPSNDEWKGLSVIGVQQIDQVVRVVEETLKGNTI 120
Query: 172 RLLHRKKLPA------------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
RL+ K + LDLPKVRRN F+EI+PIN GCL CTYCKTKHARG LG
Sbjct: 121 RLMKEAKEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTKHARGDLG 180
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD--GSTM 277
SY++ ++ RV +V+ +GVKE+WL+SEDTGAYGRDIGV++ LL I+ + M
Sbjct: 181 SYSLAEIIARVESVLHEGVKEIWLTSEDTGAYGRDIGVSIVDLLEGILVAMDKHIVQDAM 240
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
LR+GMTNPP+ILEHLK IA+VL HP VYSFLHVPVQ+GS VL M R Y + DF VVD
Sbjct: 241 LRVGMTNPPYILEHLKGIAKVLNHPKVYSFLHVPVQAGSTKVLDDMRRLYAVQDFERVVD 300
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
L E VP + IATDIICGFP ETDEDF++T++L+++YKF +HISQFYPRPGTPAARMK+
Sbjct: 301 VLREKVPCVTIATDIICGFPTETDEDFDETMHLLEKYKFSVLHISQFYPRPGTPAARMKR 360
Query: 398 VPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPST 452
+ + +VK RSR T+ FE++T Y + G +++I +TE +ADG H Y Q+LVP
Sbjct: 361 ISTNIVKNRSRRATTFFESYTTYDSLVGTIQKILVTEQSADGNHYVGHNKPYQQILVPKN 420
Query: 453 GNMLGTSALVKITSVGRWSVFGE 475
++G + V+I ++ + GE
Sbjct: 421 EKLMGQTFHVRIVRASKFYLMGE 443
>gi|449279432|gb|EMC87024.1| CDK5 regulatory subunit-associated protein 1-like 1, partial
[Columba livia]
Length = 515
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/435 (53%), Positives = 314/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++
Sbjct: 58 IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + KK +V+AGCVPQ L+G+SI+GV ++EVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQDYLKGLSIIGVCIF--IIEVVEETIKGHSVRLL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 176 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+
Sbjct: 236 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 294 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGIT 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETDEDF +T+ L+++Y+FP + I+QFYPRPGTPAA++ +VP+AV K+R+
Sbjct: 354 IATDIICGFPGETDEDFQETMKLVEQYRFPSLFINQFYPRPGTPAAKLHQVPAAVKKQRT 413
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
++L+ +F ++ PY G +R+ +TE + D + Y QVLVP ++G V
Sbjct: 414 KDLSQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPLLMGKMVEV 473
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 474 NIYEAGKHFMKGQPV 488
>gi|340723640|ref|XP_003400197.1| PREDICTED: CDKAL1-like protein-like [Bombus terrestris]
Length = 540
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/435 (54%), Positives = 312/435 (71%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N EAD+WL+N+CTVK+P++
Sbjct: 56 VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKNPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 176 QQKKEGGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTG YGRDIG +LP LL +V ++ PDG +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWTLV-KVVPDGCR-IRVGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E++++L HP VYSFLH+PVQSGSD VL+ M REYT +DF VV+ L E VP +
Sbjct: 294 ILEHLEEMSKILSHPKVYSFLHIPVQSGSDQVLADMKREYTRADFERVVNFLRERVPELT 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET++DF +T+ L ++YKFP + ++QF+PRPGTPAARM K+P+ +VK R+
Sbjct: 354 IATDIICGFPTETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTKIPTQIVKNRT 413
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ L+ F++++PY G V+ + +TEI+ D H Y QVL+P LG V
Sbjct: 414 KRLSEFFQSYSPYFERIGLVQDVLVTEISHDRKHYVGHNKSYEQVLLPLKKEYLGKIVTV 473
Query: 463 KITSVGRWSVFGEVI 477
KI ++ + GE I
Sbjct: 474 KIVETTKYCMKGEPI 488
>gi|355561353|gb|EHH17985.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/435 (54%), Positives = 313/435 (71%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+ +GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLATYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ VVKK
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVVKKAK 417
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
+ +++PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 418 DKXXXXXXSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 477
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 478 DICESGKHFMKGQPV 492
>gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 442
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 222/373 (59%), Positives = 291/373 (78%), Gaps = 9/373 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416
Query: 408 RELTSVFEAFTPY 420
++L+ VF ++ PY
Sbjct: 417 KDLSRVFHSYNPY 429
>gi|339252460|ref|XP_003371453.1| putative radical SAM domain protein [Trichinella spiralis]
gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis]
Length = 542
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/436 (53%), Positives = 315/436 (72%), Gaps = 16/436 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG ++Y+KT+GC+HN SDSEYMAG +S+ GY + D+ ADIWL+N+CTVK+PS+ +
Sbjct: 48 IPGAFSVYVKTWGCTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQHV 107
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K ++ KP++V+GCVPQ + L+GVS+VG+QQIDR+VEVVEETLKG+ V+LL
Sbjct: 108 QNELEKARALNKPVIVSGCVPQAEPSIPWLQGVSLVGIQQIDRIVEVVEETLKGNTVQLL 167
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ KK+ LDLPKVRRN VEI+ IN GCL CTYCKTK ARG+L SY++E ++
Sbjct: 168 NYKKVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTKKARGNLASYSIEEII 227
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + I++GVKE+WL+SED GAYGRDI LP LL A+ A+LP DG MLR+GMTNPPF
Sbjct: 228 DRAESCISEGVKEIWLTSEDLGAYGRDIDCTLPELLKALTAKLP-DG-VMLRLGMTNPPF 285
Query: 288 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I ++EI E+L HPCVYSFLH+PVQSGSDAVL M REY + DF VV+ + + VPG+
Sbjct: 286 HIPISVQEIGEILNHPCVYSFLHIPVQSGSDAVLRDMRREYNVDDFCAVVEFMRKKVPGI 345
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATD+ICGFP ET++DF T++L+++Y+F + I+QFYPRPGTPAA++K++ +AVVK R
Sbjct: 346 TIATDVICGFPTETEQDFKDTLDLVEKYRFASLFINQFYPRPGTPAAKLKRLDTAVVKDR 405
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITE--IAADGIHLG----YVQVLVPSTGNMLGTSA 460
+R +T +F ++ PY G ++ ITE D +G Y Q+LV + N+LG
Sbjct: 406 TRRMTQLFNSYEPYRNRVGLKYQVLITERSFRGDDYLVGHNKFYEQILVANQPNLLGKKV 465
Query: 461 LVKITSVGRWSVFGEV 476
VKI S + S+ GE+
Sbjct: 466 WVKIVSCSKHSMVGEL 481
>gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis]
Length = 541
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/435 (53%), Positives = 306/435 (70%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KT+GC+HN SDSEYMAGQLS +GY LT++ AD+W++N+CTVK+P++
Sbjct: 57 IPGTQTIYIKTWGCTHNSSDSEYMAGQLSMYGYNLTEDKSIADLWILNSCTVKNPAEDHF 116
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VV+GCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+ L
Sbjct: 117 KNEINLARKLGKHIVVSGCVPQGAPKSNFIQGLSIIGVQQIDRVVEVVEETLKGNTVKFL 176
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++KK L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E ++
Sbjct: 177 NKKKEAGKKIGGAPLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYRPEEII 236
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R DG+KE+WL+SEDTGAYG+DI NLP LL ++ ++ PD M RIGMTNPP+
Sbjct: 237 DRAIQAFKDGIKELWLTSEDTGAYGKDIDTNLPELLWKLI-DVIPDKCRM-RIGMTNPPY 294
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+EI ++L+HP VYSFLH+PVQSGSD VL M REY+ SDF +VD L E +P +
Sbjct: 295 ILEHLEEIGKILKHPKVYSFLHIPVQSGSDRVLFDMKREYSRSDFENIVDFLKEKIPNIN 354
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATD+ICGFP ET EDF +T++L ++YKF + I+QF+PR GTPAA+M +VPS +K R+
Sbjct: 355 IATDVICGFPTETSEDFEETMSLCQKYKFSTLFINQFFPRQGTPAAKMIQVPSKEIKNRT 414
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
+ ++ F+++ PY G ++ + +TEIA D H Y QVL+P +G V
Sbjct: 415 KLISEFFQSYEPYNTKIGEIQEVLVTEIAHDNKHYVAHNSYYEQVLIPMKKEYMGEMLKV 474
Query: 463 KITSVGRWSVFGEVI 477
KI S + S+ GE
Sbjct: 475 KIISASKHSMKGEAF 489
>gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a
[Mus musculus]
Length = 444
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/427 (54%), Positives = 312/427 (73%), Gaps = 14/427 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRV 422
Query: 414 FEAFTPY 420
F ++ PY
Sbjct: 423 FHSYNPY 429
>gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba]
gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba]
Length = 552
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/457 (53%), Positives = 322/457 (70%), Gaps = 26/457 (5%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP +H + IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPTIH----------ASVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GK 104
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
EEAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
QIDRVVEVVEETLKG+ V+LL KK L LPKVR+N+ +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGNSVQLLQNKKKVHGRRVAGAPLSLPKVRKNRLIEIISINSGCLNQ 224
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQ 284
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
+V +P MLR+GMTNPP+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M R
Sbjct: 285 LVEVIPE--HCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKR 342
Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
EY DF VVD L E VPG+ IATDIICGFP ET+EDF +T+ L +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCAKYRFPSLFINQFF 402
Query: 386 PRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL--- 442
PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY G V + +TE++ D +H
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEVYTVLVTEVSHDKLHYVGH 462
Query: 443 --GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 463 NKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499
>gi|354468803|ref|XP_003496840.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Cricetulus griseus]
Length = 432
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 219/373 (58%), Positives = 289/373 (77%), Gaps = 9/373 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIRKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +VA +P MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVAVIP--EGAMLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +T+ L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETLKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRT 416
Query: 408 RELTSVFEAFTPY 420
++L+ VF ++ PY
Sbjct: 417 KDLSRVFHSYNPY 429
>gi|405952652|gb|EKC20438.1| hypothetical protein CGI_10006004 [Crassostrea gigas]
Length = 536
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/435 (52%), Positives = 307/435 (70%), Gaps = 35/435 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GCSHN SDSEYMAGQL+++GY +TD+SE AD+WL+N+CTVK+P++
Sbjct: 64 IPGTQKVWLKTWGCSHNNSDSEYMAGQLASYGYKITDDSESADLWLLNSCTVKNPAEDHF 123
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + +K +VVAGCVPQG L+G+S++GVQQIDRV EVVEETLKGH VRL
Sbjct: 124 RNEIKKAREKQKKIVVAGCVPQGQPRTDYLQGLSVIGVQQIDRVTEVVEETLKGHSVRLY 183
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 184 GQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 243
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+GMTNPP+
Sbjct: 244 ARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RLGMTNPPY 301
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL M REY +DFR V D L E VPG+
Sbjct: 302 ILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLKERVPGVT 361
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPGTPAA+M ++P+ ++ +
Sbjct: 362 IATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPAQLMSE-- 419
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++++ +TE + D G + Y QVLVP N++G V
Sbjct: 420 -------------------IQQVLVTETSHDQQYYVGHNKFYDQVLVPKNENLMGKMVTV 460
Query: 463 KITSVGRWSVFGEVI 477
+I G+ + G+++
Sbjct: 461 RIVETGKHFLKGQLL 475
>gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica]
Length = 1581
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/459 (50%), Positives = 317/459 (69%), Gaps = 20/459 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTCTVKSPSQSAMD 115
+ IY++T+GC+HN SDSEYMAGQL+ GY + D+++ E D+WL+N+CTVK+P++
Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
I + P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 111 NAINAAQKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170
Query: 176 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
KK L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF VVDTL VP I
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNI 348
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
ATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA+ +++P V+K+R++
Sbjct: 349 ATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKWEQIPRQVIKERTK 408
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPST-GNMLGTSALV 462
+L++VF+++ P+ G EG + ITE+A D + L Y Q+LV ++G V
Sbjct: 409 KLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLVGHTKSYHQILVKGNPDELMGKRVDV 468
Query: 463 KITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 501
+ + S+ G ++ + V IA N +I + ++ K
Sbjct: 469 VVYQTTKHSMLGRIVSVAKSV--AIAENLQIMKEKQEAK 505
>gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
Length = 401
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 219/335 (65%), Positives = 275/335 (82%), Gaps = 2/335 (0%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYAL-TDNSEEADIWLINTCTVKSPSQSA 113
+PGT+ +++KTFGCSHN SDSEYMAGQL +GY + AD+WLIN+CTVK PSQ+
Sbjct: 3 VPGTQAVWVKTFGCSHNISDSEYMAGQLQDYGYRRESAGCNPADLWLINSCTVKGPSQAG 62
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M +LIA ++ K L+VAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ VRL
Sbjct: 63 MSSLIAVGRAGGKRLLVAGCVPQGDKRLPELQGVSVLGVTQIDRVVEAVEETLRGNTVRL 122
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +K+LP LDLPKVRRN+ +EI+PI+ GCLGACTYCKTKHARGHLGSY +LV RVR
Sbjct: 123 LAKKELPRLDLPKVRRNRHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALVERVRQA 182
Query: 234 IAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
AD V+E+W+SSEDTGAYGRDIG +LP LL+A++A LPPDG TMLR+GMTNPP++LEHL
Sbjct: 183 AADPWVREIWISSEDTGAYGRDIGCSLPELLDALIAVLPPDGRTMLRVGMTNPPYVLEHL 242
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+ ++ LRHPCV+S+LHVPVQSGSDAVL +M REYT+++FR VVDTL+ VPGM++ATDI
Sbjct: 243 EALSAALRHPCVFSYLHVPVQSGSDAVLDSMKREYTVAEFRRVVDTLLAGVPGMELATDI 302
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
I FPGE+ D +T+ L+++Y+FP HISQFYPR
Sbjct: 303 ITAFPGESPGDHVRTLELLRQYRFPHTHISQFYPR 337
>gi|357625033|gb|EHJ75587.1| hypothetical protein KGM_15103 [Danaus plexippus]
Length = 538
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/436 (52%), Positives = 298/436 (68%), Gaps = 15/436 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY+KT+GC+HN SDSEYMAG L+A GY LT++ A +WL+N+CTVKSP++
Sbjct: 57 VPGTQTIYVKTWGCAHNNSDSEYMAGLLAAHGYKLTEDKFSAQLWLLNSCTVKSPAEDHF 116
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + LV+AGCVPQG+ L G+S+VGV QIDR+VE+VEETLKGH VRL
Sbjct: 117 KNEIELAQKRGIHLVLAGCVPQGAPRSGYLAGLSVVGVHQIDRIVEIVEETLKGHTVRLF 176
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+KK +L LPKVR+N +EI+PIN GCL CTYCKTKHARG LGSY E +
Sbjct: 177 GQKKTEEGRKAGGASLLLPKVRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEEI 236
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R +GV E+WL+SEDTG YGRDIG +LP LL +VA +P LR+GMTNPP
Sbjct: 237 VERATQSFKEGVCEIWLTSEDTGTYGRDIGTSLPYLLKQLVAVIPE--GCRLRLGMTNPP 294
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ILEHL E+AE++ HP VY FLHVPVQSGSD VL+ M REY+ DF VVD L E VPG+
Sbjct: 295 YILEHLAEVAEIMHHPRVYKFLHVPVQSGSDQVLADMKREYSRKDFERVVDYLAERVPGI 354
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATDIICGFP ETD DF T+ L +Y+F + I+QF+PRPGTPAA M +VP VKKR
Sbjct: 355 TIATDIICGFPTETDADFEDTMQLCMKYRFSSLFINQFFPRPGTPAANMTRVPPQDVKKR 414
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSAL 461
+++L+ F ++ PY G ++ + +T+++ D + Y QVLVP +G
Sbjct: 415 TKKLSEFFRSYEPYGHKVGEIQEVLVTDVSHDKNYYVAHNEFYEQVLVPKEERYMGKLVT 474
Query: 462 VKITSVGRWSVFGEVI 477
V+ITS ++S+ G +
Sbjct: 475 VRITSASKFSMMGHPV 490
>gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica]
Length = 1590
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/459 (50%), Positives = 316/459 (68%), Gaps = 20/459 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTCTVKSPSQSAMD 115
+ IY++T+GC+HN SDSEYMAGQL+ GY + D+++ E D+WL+N+CTVK+P++
Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
I P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 111 NAINAAHKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170
Query: 176 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
KK L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF VVDTL VP I
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNI 348
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
ATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA+ +++P V+K+R++
Sbjct: 349 ATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKWEQIPRQVIKERTK 408
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPST-GNMLGTSALV 462
+L++VF+++ P+ G EG + ITE+A D + L Y Q+LV ++G V
Sbjct: 409 KLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLVGHTKSYHQILVKGNPDKLMGKRVDV 468
Query: 463 KITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 501
+ + S+ G ++ + V IA N +I + ++ K
Sbjct: 469 VVYQTTKHSMLGRIVSVAKSV--AIAENLQIMKEKQEAK 505
>gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1]
Length = 466
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/447 (50%), Positives = 305/447 (68%), Gaps = 30/447 (6%)
Query: 38 PRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
PR HD + IPG++TI+++T+GCSHN SD EYMAG LSA GY ++D E AD
Sbjct: 30 PR-HDRSRREQAEGDSFIPGSKTIFLRTWGCSHNNSDGEYMAGLLSAAGYTISDKREGAD 88
Query: 98 IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 157
+W++N+CTVK+PS+ + I +S P+V+AGCVPQ QIDR
Sbjct: 89 LWILNSCTVKTPSEDTFNNEIRDARSRNIPVVLAGCVPQ---------------TMQIDR 133
Query: 158 VVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCK 210
VVEVVEETL+G VRLL KK+ ALDLPK+RRN +EI+PIN GCL CTYCK
Sbjct: 134 VVEVVEETLQGRTVRLLGSKKVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCTYCK 193
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270
TKHARG LGSYT++ +V RV+ VIA+GV E+WL+SEDTGAYGRDI ++P LL AI+A +
Sbjct: 194 TKHARGDLGSYTIQEIVQRVQQVIAEGVVEIWLTSEDTGAYGRDINTSIPELLRAILAVV 253
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
P M+R+GMTNPP+I+EH++ IAE LRHP +Y F+H+P+QSG++ +L AM REYT
Sbjct: 254 P--AGVMVRLGMTNPPYIVEHVQAIAECLRHPRMYKFIHIPIQSGANPILHAMQREYTRE 311
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390
DF V DTL+E VP + IATDIICGFPGETD DF T +++ Y FP + +QF+PRPGT
Sbjct: 312 DFCFVADTLLEQVPALTIATDIICGFPGETDADFEDTFEIVRRYHFPSLFTNQFFPRPGT 371
Query: 391 PAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYV 445
PAA M++V +VK+R++EL+ F + Y +R+ +T+ A D +H +
Sbjct: 372 PAAAMERVDPRLVKQRTKELSDYFRGYRVYDDQLDSYQRVLVTDTATDNVHFVAHNRSFD 431
Query: 446 QVLVPSTGNMLGTSALVKITSVGRWSV 472
QVLVP+ + +G +VKIT+V ++ +
Sbjct: 432 QVLVPANPDFMGKLIVVKITNVNKFFI 458
>gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Acyrthosiphon pisum]
Length = 522
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/487 (50%), Positives = 331/487 (67%), Gaps = 22/487 (4%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIY 62
DIEDL++ S A G P N V + PK K KP H ++PGT+TI+
Sbjct: 8 DIEDLIS-SVADVAEIGRVKPRNIVSLRPKV-KVKPVREILHPPS------QVPGTQTIF 59
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+KT+GCSHN SD EYMAG LS +GY +T++ AD+W++N+CTVK+P++ I+ K
Sbjct: 60 IKTWGCSHNSSDGEYMAGLLSNYGYKITEDKAIADLWILNSCTVKNPAEDHFRNEISTGK 119
Query: 123 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL--- 179
+ K +VVAGCVPQG + ++ +S++GVQQIDRVVEVVEETLKGH +RLL +KK+
Sbjct: 120 KSGKFVVVAGCVPQGDQKSPFIQNLSVIGVQQIDRVVEVVEETLKGHTIRLLGQKKINGK 179
Query: 180 ----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
L LPK+R+NK +EI+ I+ GCL CTYCKTKHARG+LGSY + +V R
Sbjct: 180 KDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCKTKHARGNLGSYPPDEIVQRAIESFN 239
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G E+WL+SEDTGAYG DI NLP LL +VA +P M+RIGMTNPP+IL HL+EI
Sbjct: 240 EGAVELWLTSEDTGAYGLDIQTNLPELLWRLVAIIPE--GCMMRIGMTNPPYILNHLEEI 297
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
A++L HP VY+FLHVPVQSGS+ VL+ M REY++ +F TVV+ L + VPG+ IATDIICG
Sbjct: 298 AKILSHPRVYAFLHVPVQSGSNQVLADMKREYSIEEFETVVNFLRQRVPGVSIATDIICG 357
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP ET+EDF++T+++ ++YKFP + I+QFYPR GTPAARM K+P+ +VK R++ LT +F
Sbjct: 358 FPTETEEDFSETMSVCEKYKFPSLFINQFYPRKGTPAARMPKIPTDMVKIRTKRLTELFH 417
Query: 416 AFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRW 470
++T Y G ++ I ITE A +GI Y QVLV ++G V + S +
Sbjct: 418 SYTTYDHRIGEIQEILITEEAKNGIEFIGHNKYYEQVLVAKDPELMGKCIEVIVKSAKKH 477
Query: 471 SVFGEVI 477
+ E++
Sbjct: 478 CLIAEMV 484
>gi|427785609|gb|JAA58256.1| Putative cdk5 regulatory subunit associated protein 1-like 1
[Rhipicephalus pulchellus]
Length = 554
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/442 (53%), Positives = 314/442 (71%), Gaps = 14/442 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 51 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 111 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 170
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV
Sbjct: 171 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 230
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIGV LP LL IV +P MLR+GMTNPP+
Sbjct: 231 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREIVQVIPE--GCMLRLGMTNPPY 288
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+
Sbjct: 289 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGIT 348
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+
Sbjct: 349 IATDIICGFPTETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERT 408
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
++++ +F+++ PY G + +T+ A D HL Y Q+L+P +G V
Sbjct: 409 KQVSELFQSYVPYSHRVGERHTVLVTDTAHDQKHLVGHNKFYEQILLPMDDQYMGQLVDV 468
Query: 463 KITSVGRWSVFGEVIKILNQVD 484
+IT G+ + V+ I +D
Sbjct: 469 EITGGGKHFMQCNVVGINTALD 490
>gi|431913258|gb|ELK14936.1| CDK5 regulatory subunit-associated protein 1-like 1 [Pteropus
alecto]
Length = 621
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/399 (55%), Positives = 295/399 (73%), Gaps = 16/399 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+AFGY +T+N+ EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAFGYKITENASEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ V D L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVADFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V+ +R
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVIGERQ 416
Query: 408 RELTS-------VFEAFTPYLGMEGRVERIWITEIAADG 439
+ L + + A + G +++ +TE + D
Sbjct: 417 QVLVTEESFDSKFYVAHNRFYEQIGERQQVLVTEESFDS 455
>gi|427797963|gb|JAA64433.1| Putative cdk5 regulatory subunit-associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 550
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/442 (53%), Positives = 314/442 (71%), Gaps = 14/442 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 87 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 146
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 147 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 206
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV
Sbjct: 207 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 266
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIGV LP LL +V +P MLR+GMTNPP+
Sbjct: 267 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREMVQVIPE--GCMLRLGMTNPPY 324
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+
Sbjct: 325 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGIT 384
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+
Sbjct: 385 IATDIICGFPTETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERT 444
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALV 462
++++ +F+++ PY G + +T+ A D HL Y Q+L+P +G V
Sbjct: 445 KQVSELFQSYVPYSHRVGERHTVLVTDTAHDQKHLVGHNKFYEQILLPMDDQYMGQLVDV 504
Query: 463 KITSVGRWSVFGEVIKILNQVD 484
+IT G+ + V+ I +D
Sbjct: 505 EITGGGKHFMQCNVVGINTALD 526
>gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase, partial [Pongo abelii]
Length = 577
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/435 (52%), Positives = 308/435 (70%), Gaps = 14/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +VVAGCVPQ L+G+SI+GVQQIDRVVEVVEET+KG+ V L
Sbjct: 120 RNSIKKAQEENKKIVVAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGYSVSHL 179
Query: 175 HRKKLPALDLPKVRRNK-------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ K L R V ++ +N CL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 CKYKQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALV 462
++L+ VF +++PY G +++ +TE + D + Y QVLVP +G V
Sbjct: 418 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEV 477
Query: 463 KITSVGRWSVFGEVI 477
I G+ + G+ +
Sbjct: 478 DIYESGKHFMKGQPV 492
>gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus]
gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus]
Length = 555
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/436 (52%), Positives = 303/436 (69%), Gaps = 16/436 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ IY+KT+GC+HN SDSEYMAGQL+++GY +T + +A++WL+N+CTVK+PS+
Sbjct: 63 IPGTQRIYLKTWGCAHNSSDSEYMAGQLASYGYNITTDKTDANLWLLNSCTVKNPSEDTF 122
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +V+AGCVPQ + + + G+SIVGVQQ+DRV EVVEETLKGH VRLL
Sbjct: 123 RNEILAAEKMGKHVVLAGCVPQAAPKSEYMHGLSIVGVQQLDRVTEVVEETLKGHSVRLL 182
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ P L LPKVR+N +EI+PIN GCL CTYCKTK AR L SY VE ++
Sbjct: 183 QPKKVNGKKVAGPNLALPKVRKNPLIEIIPINSGCLNTCTYCKTKFARADLISYPVEEII 242
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R V +GV E+WL+SEDTG YGRDIG +LP LL +V E+ PD + LR+GMTNPP+
Sbjct: 243 ERATQVFQEGVCEIWLTSEDTGTYGRDIGSSLPELLWKLV-EVIPD-NCRLRLGMTNPPY 300
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL E+A++L HP VY FLHVPVQSGSD+VL M REY +DF + D L + VPG+
Sbjct: 301 ILEHLDEMAKILAHPKVYGFLHVPVQSGSDSVLGEMKREYCRADFERICDFLKQKVPGIT 360
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+ DF T++L +Y+FP + I+QFYPRPGTPAA+M+++P VK R+
Sbjct: 361 IATDIICGFPTETEADFEHTMSLCAKYEFPSLFINQFYPRPGTPAAKMQRIPPDQVKTRT 420
Query: 408 RELTSVFEAFTPYLGME--GRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSA 460
+ LT +F + PY G + + +TEI+ D H Y Q+L+P +LG
Sbjct: 421 KRLTDLFYGYEPYAKKYTIGDRQTVLVTEISHDKKHYVGHNKFYEQILLPMDKPLLGKLV 480
Query: 461 LVKITSVGRWSVFGEV 476
V+I + ++S+ E+
Sbjct: 481 EVRIAKITKFSMIAEI 496
>gi|355677418|gb|AER95991.1| CDK5 regulatory subunit associated protein 1-like 1 [Mustela
putorius furo]
Length = 411
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/409 (55%), Positives = 298/409 (72%), Gaps = 14/409 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ G P R V PK K + + + S S IPG +
Sbjct: 10 LEDIEDIVSQ---GDLKPQDRHSARK-HVVPKARKRNTQKYLQEENSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWLRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY +E LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIEELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ +ATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITLATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
CGFPGETD+DF +TV L++EY+FP + I+QFYPRPGTPAA+M +VP+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYRFPSLFINQFYPRPGTPAAKMAQVPAQV 411
>gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis]
Length = 507
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 305/427 (71%), Gaps = 4/427 (0%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP +++ TFGC+HN +D EYM G LS +G+ +N +EA +W++N+CTVK PS+
Sbjct: 48 IPEKYKLWIITFGCAHNFADGEYMKGILSDYGFQFAENRDEASLWVLNSCTVKDPSEIVF 107
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K K +VVAGCVPQ D L +SI+GV+QI R+VEVVEETLKG+ + LL
Sbjct: 108 RNYVTEAKEKNKMVVVAGCVPQADSDASWLRDLSILGVKQIHRIVEVVEETLKGNTIHLL 167
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K+LP LDLPK+RR+ +EI+PI+ GCLG CTYCKT++ARG L SY ++S++ R+R
Sbjct: 168 SLKELPPLDLPKIRRDPHIEIVPISEGCLGHCTYCKTQYARGKLMSYPLQSIINRLRAAF 227
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+ V EVWLSSEDTGAYG D G+++ LL I + +P +TM+R+GMTNPP++L HLKE
Sbjct: 228 DEHVFEVWLSSEDTGAYGIDRGLSIADLLKEIPSVIPDQSNTMVRLGMTNPPYVLSHLKE 287
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+A LRHP V+SF+H+PVQSGS+AVL+ M R+YT+ F ++VD L++ VPG+ IATDII
Sbjct: 288 VAAFLRHPNVFSFIHIPVQSGSNAVLNTMQRQYTVEQFTSIVDYLLKEVPGLTIATDIII 347
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GF ETDED QT++L+K+Y+FP V+IS+F+PRPGTPAARMK + S++VK+RS E ++ F
Sbjct: 348 GFASETDEDHKQTMDLLKKYQFPVVNISKFFPRPGTPAARMKHISSSIVKERSSECSAWF 407
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVGRW 470
++ PY G+VE +W+ + +G YV+VL+P ++ G KIT + R+
Sbjct: 408 KSLNPYQHFLGKVELVWVGSETSREFMVGHTKAYVKVLLPMCESLRGKRVAAKITQITRF 467
Query: 471 SVFGEVI 477
V GE++
Sbjct: 468 HVVGEIV 474
>gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus]
Length = 416
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/359 (60%), Positives = 281/359 (78%), Gaps = 9/359 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V KK+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKKK 415
>gi|429329558|gb|AFZ81317.1| RNA modification enzyme, MiaB family domain-containing protein
[Babesia equi]
Length = 643
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 310/440 (70%), Gaps = 9/440 (2%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
H +T + +P IPG++T+Y + FGC+HN SDSEYM G LS +GY +TD+ +A + +IN+
Sbjct: 205 HEKETCNHTPLIPGSQTVYFRGFGCAHNSSDSEYMMGILSEYGYNITDDMSKAQVAVINS 264
Query: 104 CTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELE--GVSIVGVQQIDRVVEV 161
CTVK PSQ AM T I K K K P+VV GCVPQ ++L L+ VS++G QIDR+VEV
Sbjct: 265 CTVKGPSQDAMATEIRKAKDLKIPIVVGGCVPQADKNLTPLKDPSVSLLGTSQIDRIVEV 324
Query: 162 VEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
VE L+G ++ LL RK LP+L+LPK+R+N+ +EI+P++ GCLG+CT+CKTK ARG LGSY
Sbjct: 325 VEHALQGRKLVLLERKTLPSLELPKIRQNELIEIIPLSTGCLGSCTFCKTKQARGVLGSY 384
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
T+ES++ RV + ++ V ++WL+SEDTGAYG DIG+++ +LL +I+ LPPD MLR+G
Sbjct: 385 TLESILDRVESAVSQKVSQIWLTSEDTGAYGIDIGIDIVVLLKSILPLLPPD--VMLRLG 442
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
M+NPP+I H++EIA++L+H V+ F+H+PVQSGSD VL AMNREY + +F +VD + E
Sbjct: 443 MSNPPYIKRHIEEIAKILKHKNVFEFIHIPVQSGSDRVLDAMNREYHIDEFLFLVDKIRE 502
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
VP +ATDIICGFP ETDE+ +T+ L+K+ K P V+ISQFYPRPGTPAA+MK P+
Sbjct: 503 SVPDCSLATDIICGFPTETDEEHLETIQLLKDLKLPIVNISQFYPRPGTPAAKMKAHPNK 562
Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNML 456
V K R+RE+T VF ++ G+ +W ++ H Y++V+V ++L
Sbjct: 563 VAKSRTREVTEVFLSYECNSHYLGKTLPVWFSQTDVKRNHTIGHTKNYIKVVVDKDDSLL 622
Query: 457 GTSALVKITSVGRWSVFGEV 476
G V + +W + G V
Sbjct: 623 GKRRDVLVQHATKWHLTGIV 642
>gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella]
Length = 542
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/490 (50%), Positives = 316/490 (64%), Gaps = 21/490 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL+ S P V V + N K ++ + L +PGT+T
Sbjct: 9 IDDIEDLI--SSQDITPKERYASRKNVSVRSRKNNTK----ESEPVEKVILQSVVPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYM G L+A GY LTD+ A +WL+N+CTVK+P++ I
Sbjct: 63 IYVKTWGCAHNNSDSEYMVGLLAAQGYQLTDDKWSAQLWLLNSCTVKNPAEEHFRNEIEL 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
++ +VVAGCVPQG+ L G+SIVGV QIDR+VE+VEETLKGH VRL +KK
Sbjct: 123 GQARGIHVVVAGCVPQGAPRAGYLAGLSIVGVHQIDRIVEIVEETLKGHTVRLFGQKKTD 182
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R
Sbjct: 183 DGKKAGGASLQLPKVRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARQ 242
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTG YGRDIG +LP LL+ VA +P LR+GMTNPP++LEHL
Sbjct: 243 SFKEGVCEIWLTSEDTGTYGRDIGTSLPELLDQPVAAIP--AGCRLRLGMTNPPYMLEHL 300
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+A ++RH VY FLHVPVQSGSD VL+ M REY+ DF VVD L + VPG+ IATDI
Sbjct: 301 PRVAGIMRHSRVYKFLHVPVQSGSDQVLADMKREYSRKDFGYVVDYLRKEVPGITIATDI 360
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFP ET D TV+L ++Y+FP + I+QF+ RPGTPAA M KVP VKKR++EL+
Sbjct: 361 ICGFPTETAADHELTVSLCRQYRFPSLFINQFFARPGTPAANMTKVPGQEVKKRTKELSE 420
Query: 413 VFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSV 467
+F ++ PY G + + T+I+ D G + Y QVLVP +G VKITS
Sbjct: 421 LFRSYEPYGHKVGETQEVLDTDISHDKKYFVGHNEFYEQVLVPKEERYMGKMLTVKITSA 480
Query: 468 GRWSVFGEVI 477
++S+ GE I
Sbjct: 481 SKFSMMGEPI 490
>gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis]
Length = 460
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/395 (56%), Positives = 299/395 (75%), Gaps = 9/395 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT IY+KT+GC+HN SDSEYMAGQL+A GY++ +++ AD+WL+N+CTVK+P++
Sbjct: 52 LPGTHKIYVKTWGCAHNSSDSEYMAGQLAAKGYSIVEDASSADLWLLNSCTVKNPAEDHF 111
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +V AGCV Q + +++ L+G+S+VGVQQ DR+VEVVEETLKG+ VRLL
Sbjct: 112 RGAIDSGLRQGKKVVAAGCVSQATPNVEYLKGLSVVGVQQTDRIVEVVEETLKGNSVRLL 171
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK AL LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY++E LV
Sbjct: 172 GSKKDGRRKAGGAALTLPKIRRNPLVEIIAINTGCLNHCTYCKTKHARGDLGSYSIEELV 231
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIG LP LL +VA +P MLR+GMTNPP+
Sbjct: 232 ARAKQAFQEGVREIWLTSEDTGAYGRDIGETLPDLLREMVAVVPE--GCMLRLGMTNPPY 289
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL++L+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT + FR V+D L + VPG+
Sbjct: 290 ILDYLEDMAEILSHPRVYSFLHVPVQSGSDPVLAEMKREYTAAQFRIVIDFLRKAVPGIT 349
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDIICGFP ET+EDF +T+ L++EY+FP + I+QFYPRPGTPAA+MK++P+ VVK+R+
Sbjct: 350 IATDIICGFPTETEEDFEETMALVREYRFPSLFINQFYPRPGTPAAKMKRIPTHVVKERT 409
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL 442
+ L+ +F+++ Y G G+ + + +TE+A D HL
Sbjct: 410 KRLSELFQSYQTYDGRVGQRQAVLVTEVAHDKKHL 444
>gi|115618009|ref|XP_792404.2| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Strongylocentrotus purpuratus]
Length = 556
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/468 (52%), Positives = 328/468 (70%), Gaps = 18/468 (3%)
Query: 25 NAVGVNPK-YNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLS 83
N V PK N+ K R + K S+ IPGT+ +++KT+GCSHN SD EYMAGQL+
Sbjct: 29 NKQDVMPKVLNRKKDRRKNGEDIKADSI---IPGTQKVFVKTWGCSHNNSDGEYMAGQLA 85
Query: 84 AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKE 143
++GY++TD+S AD+WL+N+CTVK+P++ I K + K LV+AGCVPQG K
Sbjct: 86 SYGYSITDDSSGADVWLLNSCTVKNPAEDHFRNEIQKAQQQGKALVLAGCVPQGQPKAKY 145
Query: 144 LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEIL 196
++GVS++GVQQIDRVVEVVEET+KG+ VRL +KK +LDLPK+RRN VEIL
Sbjct: 146 MQGVSVIGVQQIDRVVEVVEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEIL 205
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
IN GCL CTYCKTKHARG LGSY E LV R + +GV E+WL+SEDTGAYG DIG
Sbjct: 206 AINTGCLNQCTYCKTKHARGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAYGIDIG 265
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
V + LL+ +V E+ P+G M+RIGMTNPP+IL+HL+ IA +LRHP VYSFLH+P+QSGS
Sbjct: 266 VTIVELLDQLV-EVIPEG-CMMRIGMTNPPYILDHLEGIARILRHPRVYSFLHIPIQSGS 323
Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
D+VL M REY +DFR +V+ L + VP + IATDIICGFP E+++DF +T++LI+E+KF
Sbjct: 324 DSVLMDMKREYCTADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFKF 383
Query: 377 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIA 436
P V I+Q++PRPGTPAA+ +VP+ K+R++ LT +F+++ Y G + +TE++
Sbjct: 384 PSVFINQYFPRPGTPAAKWPQVPAQEKKRRTKALTVLFKSYQTYDDKVGERFDVLVTEVS 443
Query: 437 ADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 479
D +L Y QVLVP LG V+I SVG+ + G V+ +
Sbjct: 444 HDKQYLVAHNKFYDQVLVPHNKEYLGRILKVEIESVGKHFLMGRVLDV 491
>gi|348566232|ref|XP_003468906.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Cavia porcellus]
Length = 613
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/476 (48%), Positives = 314/476 (65%), Gaps = 61/476 (12%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+NS EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENSSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLK-------------------------------- 142
I L + G VP G+R +
Sbjct: 119 RNSINFF------LQIFGLVPAGNRHSQWYAQAPGISGPAEPVQPRLLGAGVCTDGWLSS 172
Query: 143 ---------ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPK 186
L G++ V VQQIDRVVEVVEET+KGH VRLL +KK LDLPK
Sbjct: 173 DSTGGERQEHLXGMAHVPVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPK 232
Query: 187 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE 246
+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SE
Sbjct: 233 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 292
Query: 247 DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
DTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+
Sbjct: 293 DTGAYGRDIGTSLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYA 350
Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +
Sbjct: 351 FLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQE 410
Query: 367 TVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGR 426
TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ +F ++ PY G
Sbjct: 411 TVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSQIFHSYNPYDHKIGE 470
Query: 427 VERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
+++ +TE + D + Y QVLVP + +G V I G+ + G+ +
Sbjct: 471 KQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPSFMGKMVEVDIYESGKHFMKGQPV 526
>gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis]
gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis]
Length = 442
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/421 (54%), Positives = 299/421 (71%), Gaps = 20/421 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL+ P ++ + V K +P ++DN IP +
Sbjct: 8 VDDIEDLIVSRDSAPKPNRTKITYRSKKVK-KDEYVQPVIYDN----------PIPESHK 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYMAG LS++GY L ++ E AD+WL+N+CTVK+P++S I K
Sbjct: 57 IYIKTWGCTHNSSDSEYMAGLLSSYGYNLVEDPEIADLWLLNSCTVKNPAESHFRNEIEK 116
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K +V AGCVPQG+ ++ +SI+G+ IDRVVEVVEETLKGH VRLL +KK
Sbjct: 117 GRKLGKHIVAAGCVPQGAPKQNYIQNLSIIGIHNIDRVVEVVEETLKGHSVRLLSQKKEN 176
Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LPKVR+N ++EI+PI+ GCL CTYCKTKHARG LGSY VE +V R +
Sbjct: 177 GKKLGGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKHARGELGSYPVEEIVERAKQA 236
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
++GV E+WL+SEDTGAYG+DIG +LP LL +V E+ PD M R+GMTNPP+ILEHL+
Sbjct: 237 FSEGVVELWLTSEDTGAYGKDIGASLPELLWKVV-EVIPDNCRM-RVGMTNPPYILEHLE 294
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L H VYSFLHVPVQSGSDAVLS M REYT+SDF+ VVD L VPG+ IATDII
Sbjct: 295 EMAKILNHEKVYSFLHVPVQSGSDAVLSDMKREYTISDFKHVVDFLRLRVPGITIATDII 354
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFP ET++DF +T++L + YKFP + I+QFYPRPGTPAA+M KVP VK+R+++L +
Sbjct: 355 CGFPTETEKDFEETLSLCETYKFPSLFINQFYPRPGTPAAKMVKVPMHEVKQRTKKLADL 414
Query: 414 F 414
F
Sbjct: 415 F 415
>gi|427797957|gb|JAA64430.1| Putative cdk5 regulatory subunit associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 541
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/469 (50%), Positives = 318/469 (67%), Gaps = 41/469 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-- 112
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 51 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110
Query: 113 ----------------------AMDTLIAKCKSA---KKPLVVAGCVPQGSRDLKELEGV 147
A D ++A K +VVAGCV Q + ++ L G+
Sbjct: 111 RGAIEAALHQGKKVVVAGXXNPAEDHFRGAIEAALHQGKKVVVAGCVSQATPNVGYLRGL 170
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINV 200
SIVGVQQ DRVVEVVEETLKG+ VRLL KK L LPK+RRN VEI+ IN
Sbjct: 171 SIVGVQQTDRVVEVVEETLKGNSVRLLGSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINT 230
Query: 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 260
GCL CTYCKTKHARG LGSY ++ LV R + +GV+E+WL+SEDTGAYGRDIGV LP
Sbjct: 231 GCLNRCTYCKTKHARGDLGSYPIDELVARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLP 290
Query: 261 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
LL +V +P MLR+GMTNPP+IL+HL+++AE+L HP VYSFLHVPVQSGSD VL
Sbjct: 291 DLLREMVQVIPE--GCMLRLGMTNPPYILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVL 348
Query: 321 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVH 380
+ M REYT++ FR+VVD L + VPG+ IATDIICGFP ET+EDF +T+ L+++Y+FP +
Sbjct: 349 TEMRREYTVAQFRSVVDHLRKAVPGITIATDIICGFPTETEEDFEETMQLVRDYEFPSLF 408
Query: 381 ISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGI 440
I+QFYPRPGTPAA MK++P+ +VK+R+++++ +F+++ PY G + +T+ A D
Sbjct: 409 INQFYPRPGTPAASMKRIPTHIVKERTKQVSELFQSYVPYSHRVGERHTVLVTDTAHDQK 468
Query: 441 HL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 484
HL Y Q+L+P +G V+IT G+ + V+ I +D
Sbjct: 469 HLVGHNKFYEQILLPMDDQYMGQLVDVEITGGGKHFMQCNVVGINTALD 517
>gi|342181579|emb|CCC91059.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 578
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/442 (49%), Positives = 303/442 (68%), Gaps = 18/442 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P IPG T+++ TFGC HN SD EYMAGQL+ G+ +TD +ADI+L+N+CTVK+PS+
Sbjct: 82 PGIPGNATVFVHTFGCGHNMSDGEYMAGQLAQSGFQITDEFSQADIYLLNSCTVKNPSEE 141
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
++ + ++ KPLVVAGCVPQ D K+ VS++GV+ IDRV VV ETL+G+ VR
Sbjct: 142 HFVNMMNRVRATGKPLVVAGCVPQADPDNKQWAEVSVIGVRSIDRVSYVVNETLQGNCVR 201
Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
L+ KLPALDLPKVRRNK++EI+PI+VGCL CTYCKTK+ARG L SY
Sbjct: 202 LIGSDKEQLRVGESDKLPALDLPKVRRNKYIEIIPISVGCLNCCTYCKTKYARGDLRSYP 261
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
V +VGRVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ AEL +GS MLR+G
Sbjct: 262 VSEIVGRVREVVDDGVKEIRLTSEDSGAYGIDIGTDIVQLLRAVAAEL--EGSDVMLRVG 319
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
M+NPP++L H+ + A +LRHP VY F+H+PVQSGS+ +L M REYT+ +F +D +
Sbjct: 320 MSNPPYLLRHVDDFASILRHPNVYEFVHIPVQSGSNRILKTMLREYTVEEFCKCMDAIRT 379
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
VP + +ATDIIC FPGE + ++ +T+ L + KF ++I++FYPR TPAA MK++P+
Sbjct: 380 AVPRVTLATDIICAFPGEGEAEWRETMRLCEVAKFGVINITRFYPRRNTPAAAMKQIPTD 439
Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNML 456
+ K+R+ ELT+ F ++ Y M G V ++ + E A D HL YVQVLV + +
Sbjct: 440 IAKQRTTELTNFFNSYRTYDAMVGDVCQVTLLETAHDKHHLVGHTKNYVQVLVDPSEARM 499
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
G V I S ++SV G V++
Sbjct: 500 GERVTVVIVSATKYSVTGRVLR 521
>gi|426351722|ref|XP_004043378.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like, partial [Gorilla gorilla
gorilla]
Length = 440
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/398 (53%), Positives = 288/398 (72%), Gaps = 14/398 (3%)
Query: 92 NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVG 151
N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G+SI+G
Sbjct: 1 NASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIG 60
Query: 152 VQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLG 204
VQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN GCL
Sbjct: 61 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 120
Query: 205 ACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264
ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NLP LL
Sbjct: 121 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLW 180
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD++L M
Sbjct: 181 KLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSILMEMK 238
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QF
Sbjct: 239 REYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQF 298
Query: 385 YPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAAD-----G 439
YPRPGTPAA+M++VP+ V K+R+++L+ VF +++PY G +++ +TE + D
Sbjct: 299 YPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVA 358
Query: 440 IHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
+ Y QVLVP +G V I G+ + G+ +
Sbjct: 359 HNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 396
>gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense
DAL972]
Length = 535
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/442 (50%), Positives = 298/442 (67%), Gaps = 18/442 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P IPG TI++ TFGC HN SD EYMAGQL GY +TD +AD +L+N+CTVK+PS+
Sbjct: 45 PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+++ + + KPL+VAGCVPQ K+ VS+VGV+ IDRV VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDRVSYVVQEALQGNCVR 164
Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
LL +LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY
Sbjct: 165 LLGETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLQAVAVEL--EGTDVMLRVG 282
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
M+NPP++L H+ A VL+HP VY F+H+PVQSGSD++L M REYT+ +F +D++
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRA 342
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
VP +ATDIIC FPGE + ++ +T+ L K KF ++I++FYPR TPAA MK++P+
Sbjct: 343 AVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTD 402
Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNML 456
V K R+ ELT+ F ++ + M G V + + E A D HL YVQVLV +
Sbjct: 403 VAKHRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLVDPAQARM 462
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
G S +V ITS ++SV G V++
Sbjct: 463 GESVVVVITSATKYSVMGRVLR 484
>gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC
50818]
Length = 530
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/486 (46%), Positives = 322/486 (66%), Gaps = 23/486 (4%)
Query: 2 EDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETI 61
++IE+ AG GG RLP + V + + K R+ + + G + +PG +
Sbjct: 3 DEIEEAAAGLVGGVRRT--RLPGDGVAI-----QQKRRVPEGDRVEQGKDAGFVPGCACV 55
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GCSHN SD EYMAG LSA GY + + AD+W++N+CTVK+PS+ + I +
Sbjct: 56 YIRTWGCSHNTSDGEYMAGVLSAAGYEIVKDKMTADLWILNSCTVKTPSEDTFNNAIREG 115
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ K LV+AGCV Q K +G+SIVG+ QIDRV+EVVEETL+G VRLL +K A
Sbjct: 116 QKLGKKLVLAGCVAQAQPRGKMTQGLSIVGIHQIDRVLEVVEETLQGRTVRLLSKKSSGA 175
Query: 182 ----LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L +PK+RRN+ +EI+PIN GCL CTYCKTKHARG L SY + +V RVR V+A+G
Sbjct: 176 GGAPLAMPKIRRNELIEIIPINTGCLNQCTYCKTKHARGQLNSYPADEIVARVRQVVAEG 235
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
V E+WL+SEDTG YGRD + LL I+ E+ PDG MLR+GMTNPP+ILEHL+E+A+
Sbjct: 236 VVEIWLTSEDTGTYGRDRDDTIVNLLWKII-EVLPDG-VMLRVGMTNPPYILEHLEEMAK 293
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+L HP VY+FLH+P+Q+ SDAVL+ M REY +F +VD L E VP + IATDIICGFP
Sbjct: 294 ILNHPRVYAFLHIPIQAASDAVLTTMKREYNCEEFCHIVDFLRERVPNVTIATDIICGFP 353
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
GET+EDF +T++L ++YKFP + I+Q + P +++ A VKKR++ L+ +F+++
Sbjct: 354 GETEEDFQETMDLCEKYKFPSLFINQAHLLPA-----WRELIPATVKKRTKRLSELFQSY 408
Query: 418 TPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSV 472
PY G+ +R+ +T+++ DG + + QVLVP ++G V IT+ G+ +
Sbjct: 409 LPYEHKLGQRQRVLVTDVSTDGNYFVAHNKSFDQVLVPRRPEIMGKMITVDITATGKHFL 468
Query: 473 FGEVIK 478
G V++
Sbjct: 469 MGRVVE 474
>gi|432908314|ref|XP_004077806.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Oryzias latipes]
Length = 494
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/427 (51%), Positives = 294/427 (68%), Gaps = 20/427 (4%)
Query: 89 LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 148
+ D+ EAD+WL+N+CTVK+P++ I K + K +VVAGCVPQ + L+ +S
Sbjct: 25 ILDDPAEADLWLLNSCTVKNPAEDHFRNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKSLS 84
Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVG 201
I+GVQQIDRVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN G
Sbjct: 85 IIGVQQIDRVVEVVDEAVKGHSVRLLGQKKEGGRRLGGARLDLPKIRKNPLIEIISINTG 144
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
CL ACTYCKTKHARG L SY +E LV RVR +GV E+WL+SEDTGAYGRDIG +LP
Sbjct: 145 CLNACTYCKTKHARGDLASYPIEELVKRVRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPT 204
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LL +V ++P DG+ MLR+GMTNPP+ILEHL E+A++L HP VY+FLHVPVQS SD+VL
Sbjct: 205 LLWRLVEQIP-DGA-MLRLGMTNPPYILEHLGEMAKILNHPRVYAFLHVPVQSASDSVLM 262
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
M REY + DF+ VVD L E VPG+ IATDIICGFPGET+EDF +T+ L+K Y+FP + I
Sbjct: 263 DMKREYCIDDFKRVVDFLKERVPGVTIATDIICGFPGETEEDFQETLELVKLYRFPSLFI 322
Query: 382 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH 441
+QFYPRPGTPAA+M++VP+ V K+R+REL+ +F ++ PY G ++ + +TE + D +
Sbjct: 323 NQFYPRPGTPAAKMEQVPAQVKKQRTRELSQLFHSYNPYDHKVGEMQHVLVTEESFDAQY 382
Query: 442 L-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQ 496
Y QVLVP G V+I G+ + G V+D N I++
Sbjct: 383 YVAHNKFYEQVLVPKKVEFKGKMIEVEIYEAGKHFMKG------RPVEDSKPFNPSIAAP 436
Query: 497 VRQDKCS 503
++Q + S
Sbjct: 437 LQQGEVS 443
>gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium
parvum]
gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
Length = 543
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/447 (48%), Positives = 301/447 (67%), Gaps = 26/447 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455
Query: 401 AVVKKRSRELTSVFEAF--TPYLGM---EGRVERIWITEIAADGIHL-----GYVQVLVP 450
V K RS E+T+ F++F Y+ + +V ++W E + H Y +VLV
Sbjct: 456 GVSKSRSSEITNTFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVN 515
Query: 451 STGNMLGTSALVKITSVGRWSVFGEVI 477
N+LG A+VK+ +W + G VI
Sbjct: 516 MDNNLLGKCAMVKLIKPYKWHIEGIVI 542
>gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei]
gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 535
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/442 (49%), Positives = 297/442 (67%), Gaps = 18/442 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P IPG TI++ TFGC HN SD EYMAGQL GY +TD +AD +L+N+CTVK+PS+
Sbjct: 45 PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+++ + + KPL+VAGCVPQ K+ VS+VGV+ ID V VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDCVSYVVQEALQGNCVR 164
Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
LL +LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY
Sbjct: 165 LLGETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLRAVAVEL--EGTDVMLRVG 282
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
M+NPP++L H+ A VL+HP VY F+H+PVQSGSD++L M REYT+ +F +D++
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRA 342
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
VP +ATDIIC FPGE + ++ +T+ L K KF ++I++FYPR TPAA MK++P+
Sbjct: 343 AVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTD 402
Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNML 456
V K R+ ELT+ F ++ + M G V + + E A D HL YVQVLV +
Sbjct: 403 VAKHRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLVDPAQARM 462
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
G S +V ITS ++SV G V++
Sbjct: 463 GESVVVVITSATKYSVMGRVLR 484
>gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502]
gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis]
Length = 543
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/447 (48%), Positives = 301/447 (67%), Gaps = 26/447 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGIAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTK +RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEMSLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKQSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y +E+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPIETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455
Query: 401 AVVKKRSRELTSVFEAF--TPYLGM---EGRVERIWITEIAADGIHL-----GYVQVLVP 450
V K RS E+T++F++F Y+ + +V ++W E + H Y +VLV
Sbjct: 456 GVSKGRSSEITNIFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVN 515
Query: 451 STGNMLGTSALVKITSVGRWSVFGEVI 477
N+LG A+VK+ +W + G VI
Sbjct: 516 MDSNLLGKCAMVKLIKPYKWHIEGIVI 542
>gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae]
Length = 437
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/429 (50%), Positives = 303/429 (70%), Gaps = 11/429 (2%)
Query: 55 IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
+PG + ++++T+GCSHN SDSEYMAG L GY + E AD+W++N+CTVK+PS+
Sbjct: 4 VPGVGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQ 63
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
+ L+ + + K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++VRL
Sbjct: 64 ANNLVVQGQEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVRL 123
Query: 174 LHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L R + AL LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV + R
Sbjct: 124 LTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVEQARA 183
Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDG M+R+GMTNPP+IL+H
Sbjct: 184 AFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGC-MMRLGMTNPPYILDH 241
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+EIAE+L +P VY+FLH+PVQS SDAVL+ M REY+ F + D +IE VP + IATD
Sbjct: 242 LEEIAEILNNPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIENVPNIYIATD 301
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
+I FP ET EDF +++ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++
Sbjct: 302 MILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMS 361
Query: 412 SVFEAFTPYLGME-GRVERIWITEIAADGIH-----LGYVQVLVPSTGNMLGTSALVKIT 465
+F ++T + G + + +TEIAAD IH Y Q+LVP +G V+IT
Sbjct: 362 ELFRSYTRFTEDRIGEIHNVLVTEIAADKIHGVGHNKSYEQILVPLEHCKMGEWIEVRIT 421
Query: 466 SVGRWSVFG 474
SV ++S+
Sbjct: 422 SVTKFSMIS 430
>gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
Length = 548
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/467 (45%), Positives = 303/467 (64%), Gaps = 41/467 (8%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K+PG I M+ FGC+HN+SDSE M G L +GY + + ++ D+ +IN+CTVKSPS+ +
Sbjct: 83 KVPGIGRIMMRNFGCNHNRSDSESMNGLLVEYGYEIVNELDDCDLIVINSCTVKSPSEMS 142
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
L+ + KK +VV GC+PQ R L L+ VS++GV R+VE+VE TL+G+ V +
Sbjct: 143 CRNLVETALNKKKFVVVTGCIPQAERTLPWLKNVSVLGVSYTHRIVEIVELTLQGNIVEM 202
Query: 174 LHRK------------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
+ +LP L+LPK+R+N VEI+ ++VGCLG CTYCKTK++R
Sbjct: 203 ISMNSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCTYCKTKYSR 262
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G+LGSYT+E+++ RV+T + +G+K++WL+SEDTGAYG+DIG NL L+ I+ +PPD
Sbjct: 263 GNLGSYTIETILNRVKTSLKEGIKQIWLTSEDTGAYGKDIGTNLSSLIYQILNIIPPD-- 320
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
M+RIGMTNPP+IL ++++ EVL HP V+ FLH+PVQSGS+ VL+ M R+YT DF +
Sbjct: 321 VMIRIGMTNPPYILNQIQDMVEVLSHPNVFEFLHIPVQSGSNKVLTNMRRDYTREDFCKL 380
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395
VD + + + IATDIICGFPGET+ED TV LIK+YKFP ++IS+FYPRPGTPAA+M
Sbjct: 381 VDEISSQLSLITIATDIICGFPGETEEDHQDTVELIKKYKFPVINISKFYPRPGTPAAKM 440
Query: 396 KKVPSAVVKKRSRELTSVFEA----------------FTPYLGMEGRVERIWITEIAADG 439
K VP+ + K+RS E+T++ + + + + R+W E +
Sbjct: 441 KAVPNGISKRRSLEITNILHSLKYNEELLEKLRLNMKYNLSTSISDIIVRVWFIENSDIS 500
Query: 440 IHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 481
IH Y +V+V +LG ALVK+ RW GEVI +L+
Sbjct: 501 IHTIGHTKQYTKVIVEKDDKLLGKVALVKLIKPERWHFEGEVISLLD 547
>gi|407851980|gb|EKG05664.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/439 (47%), Positives = 295/439 (67%), Gaps = 16/439 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDIKTDIVCLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAAILRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFHECVHRIRSVVP 343
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 405 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTS 459
+R+ ELT F ++ M G V + + E A D HL YVQVLV LG +
Sbjct: 404 RRTSELTEFFNSYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGET 463
Query: 460 ALVKITSVGRWSVFGEVIK 478
V I S ++SV G V++
Sbjct: 464 VTVVIMSTTKYSVVGRVLR 482
>gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
Length = 478
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/464 (47%), Positives = 310/464 (66%), Gaps = 24/464 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED++ P L N V V + + + + +PGT+
Sbjct: 1 MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+HN SDSE MAG LS G+ LT+ E+A +W++N+CTVK+PS++ ++ + +
Sbjct: 46 IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 179
+ K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L RK
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEIL 283
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
HP VYSFLH+PVQS SDAVL+ M REYT SDF VVD + + VP + IATD IC +P E
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDFICAYPTE 343
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
T DF +++ L+++Y+FP + I+QFY R GTPAA +KK+ + ++R+ E++++F +++
Sbjct: 344 TKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMSTLFRSYSR 403
Query: 420 YLGME-GRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLG 457
Y G R+ + E+A D H Y L+ S +LG
Sbjct: 404 YDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLISSKKCLLG 447
>gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/439 (47%), Positives = 296/439 (67%), Gaps = 16/439 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDINTDIICLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVP 343
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 405 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTS 459
+R+ ELT+ F ++ M G V + + E A D HL YVQVLV LG +
Sbjct: 404 RRTSELTAFFNSYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGET 463
Query: 460 ALVKITSVGRWSVFGEVIK 478
V I S ++SV G V++
Sbjct: 464 VTVVIMSTTKYSVVGRVLR 482
>gi|393907189|gb|EFO23252.2| MiaB-like tRNA modifying enzyme [Loa loa]
Length = 465
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/464 (47%), Positives = 310/464 (66%), Gaps = 24/464 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED++ P L N V V + + + + +PGT+
Sbjct: 1 MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+HN SDSE MAG LS G+ LT+ E+A +W++N+CTVK+PS++ ++ + +
Sbjct: 46 IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 179
+ K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L RK
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEGC-MLRLGMTNPPYILDFLEEISEIL 283
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
HP VYSFLH+PVQS SDAVL+ M REYT SDF VVD + + VP + IATD IC +P E
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDFICAYPTE 343
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
T DF +++ L+++Y+FP + I+QFY R GTPAA +KK+ + ++R+ E++++F +++
Sbjct: 344 TKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMSTLFRSYSR 403
Query: 420 YLGME-GRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLG 457
Y G R+ + E+A D H Y L+ S +LG
Sbjct: 404 YDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLISSKKCLLG 447
>gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
Length = 560
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/493 (45%), Positives = 322/493 (65%), Gaps = 35/493 (7%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT-ETI 61
DIED++ G G G+ + I PK ++ P ++ +PG + +
Sbjct: 2 DIEDIV-GRGPVGSRDAAEIKIRTRKQLPKEKEDVP-----------NVDSMVPGVGQKV 49
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GCSHN SDSEYMAG L GY + E AD+W++N+CTVK+PS+ + L+ +
Sbjct: 50 WVRTWGCSHNTSDSEYMAGLLQQAGYDVLKEGEAADVWILNSCTVKTPSEQQANNLVVQG 109
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV---------- 171
+ K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++V
Sbjct: 110 QEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVLPTILRTSRL 169
Query: 172 --RLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
RLL R + AL LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV
Sbjct: 170 HVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVE 229
Query: 229 RVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ R D GVKE+WL+SED GA+GRDI + LP LLNA+V +P DGS M+R+GMTNPP+
Sbjct: 230 QARAAFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALVKVIP-DGS-MMRLGMTNPPY 287
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL+HL+EIAE+L HP VY+FLH+PVQS SDAVL+ M REY+ F + D +I+ VP +
Sbjct: 288 ILDHLEEIAEILNHPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIKHVPNIY 347
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATD+I FP ET EDF +++ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+
Sbjct: 348 IATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTIEARKRT 407
Query: 408 RELTSVFEAFTPYLGME-GRVERIWITEIAADGIH-----LGYVQVLVPSTGNMLGTSAL 461
++ +F ++T + G + + +TE+AAD +H Y Q+LVP +G
Sbjct: 408 AAMSELFRSYTRFTEDRIGEIHNVLVTEVAADKLHGVGHNKSYEQILVPLEHCKMGEWIE 467
Query: 462 VKITSVGRWSVFG 474
V+ITSV ++S+
Sbjct: 468 VRITSVTKFSMIS 480
>gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/439 (47%), Positives = 294/439 (66%), Gaps = 16/439 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNGADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVSLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVP 343
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 405 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTS 459
+R+ ELT F ++ M G V + + E A D HL YVQVLV LG +
Sbjct: 404 RRTSELTEFFNSYRTLDQMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGET 463
Query: 460 ALVKITSVGRWSVFGEVIK 478
V I S ++SV G V++
Sbjct: 464 VTVVIMSTTKYSVVGRVLR 482
>gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
Length = 554
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/395 (51%), Positives = 281/395 (71%), Gaps = 5/395 (1%)
Query: 46 SKTGSLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC 104
S GS +PG + I+ KTFGCSHN SDSEYM G LS +GY +AD+ ++N+C
Sbjct: 110 SVVGSGDGNLPGAGQKIFFKTFGCSHNTSDSEYMMGLLSRYGYDFVGKIADADVVVLNSC 169
Query: 105 TVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE 164
TVK+PS+ A+ TL+ ++ P VV GCVPQ R + L S+VG QIDR+VEVVEE
Sbjct: 170 TVKNPSEDALATLVKAAEAEGLPTVVCGCVPQADRKSRALRNASLVGTSQIDRIVEVVEE 229
Query: 165 TLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
TL+G+ V LL KKLP L +LPK+RRN VEI+ +N GCLG C+YCKTK+ARG LGSY+
Sbjct: 230 TLRGNRVSLLQSKKLPELRELPKIRRNPLVEIVAVNTGCLGKCSYCKTKYARGSLGSYSK 289
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ RVRT +A+GV+++WL+SED GAYG DIG N+ LL IV EL +M+R+GMT
Sbjct: 290 EDIIARVRTALAEGVQQIWLTSEDLGAYGLDIGTNVAELLREIVGELEKYPDSMMRLGMT 349
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
NPP+IL+H +E+A++L HP V+ F+H+P+QSGS+ VL M REYT+ DF +V L V
Sbjct: 350 NPPYILQHAEEVAKILTHPQVFEFIHIPIQSGSNDVLRHMIREYTVEDFDRLVGILRARV 409
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
P + +ATD+ICGFP E++E+ +T+ LIK ++FP ++ISQFY RPGT AAR++ ++P V
Sbjct: 410 PNLTVATDVICGFPTESEENHRETLELIKRHRFPVINISQFYARPGTAAARIRPRLPGKV 469
Query: 403 VKKRSRELTSVFEAF--TPYLGMEGRVERIWITEI 435
+K+RS E+T++F ++ T L G V +W E+
Sbjct: 470 IKERSTEVTNLFMSYSLTDSLYDIGEVVEVWYDEV 504
>gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum]
Length = 535
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/435 (51%), Positives = 305/435 (70%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGTETI+++T+GCSHN SDSEYM G LS GY + E A +W++N+CTVK+PS+ +
Sbjct: 44 VPGTETIFVRTWGCSHNTSDSEYMTGLLSMAGYNIISTKENASLWVLNSCTVKTPSEDQL 103
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K K AKK +VVAGCV Q + + L GVS+VGV+QIDR+VEVVEETLKG+ VRLL
Sbjct: 104 ENEVKKAKEAKKFIVVAGCVSQADPNAEFLRGVSLVGVKQIDRIVEVVEETLKGNCVRLL 163
Query: 175 HRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
RK+ L LPK+RRN +E+L ++ GCL CTYCKTK ARG L SY E LV +
Sbjct: 164 SRKRPEQKLSLPKMRRNNLIEVLAVSSGCLNNCTYCKTKQARGDLVSYPPEELVEQAVRA 223
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
++G +E+WL+SED GA+GRD G+ LP LL A+V ++ P+G M+R+GMTNPP+IL+ L
Sbjct: 224 FSEGCREIWLTSEDLGAWGRDFGMVLPDLLKAMV-DVIPEG-CMMRLGMTNPPYILDFLD 281
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIAE+L HP VYSFLH+PVQSGSDAVL MNREY+ +DF VVD +++ VP + IATD I
Sbjct: 282 EIAEILNHPRVYSFLHIPVQSGSDAVLRDMNREYSSADFCRVVDFMLQNVPNVYIATDFI 341
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
C FP ET EDF +++ L+ Y+FP V I+QFYPR GTPAAR+KK+ + ++R+ ++S+
Sbjct: 342 CAFPTETIEDFEESMQLVHRYRFPSVFINQFYPRKGTPAARLKKITTTEARRRTAAMSSL 401
Query: 414 FEAFTPY----LGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTG-NMLGTSALVK 463
F ++T Y LGME V + E A D +H Y L+P ++LG V+
Sbjct: 402 FRSYTRYGNDRLGMEYDV---LVCEWATDKVHFVAHNKCYEHFLLPCDDVSILGQVVRVR 458
Query: 464 ITSVGRWSVFGEVIK 478
+T VG++ + E+++
Sbjct: 459 VTGVGKFHMNAEMVR 473
>gi|407416808|gb|EKF37819.1| tRNA modification enzyme, putative [Trypanosoma cruzi marinkellei]
Length = 530
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/439 (47%), Positives = 298/439 (67%), Gaps = 16/439 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG LS GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFVHTFGCSHNVSDGEYMAGLLSQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+G+ VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGNCVRLI 164
Query: 175 ----HRKK------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
H K LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GMNEHANKKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVCLLRAIVKEVQ-GTEVMVRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REY L +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYNLEEFYECVHRIRSVVP 343
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
+ +ATDIIC FPGE + ++ +T+ + + +FP ++I++FYPR TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMEVCEHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 405 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTS 459
+R+ ELT F ++ + M G V + + E A D HL YVQVLV LG +
Sbjct: 404 QRTSELTEFFNSYRTFDHMVGEVHSVTLLETAHDKHHLVGHTKAYVQVLVDPQEARLGET 463
Query: 460 ALVKITSVGRWSVFGEVIK 478
V ITS ++SV G V++
Sbjct: 464 VTVVITSTTKYSVVGRVLR 482
>gi|449681850|ref|XP_002155994.2| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Hydra magnipapillata]
Length = 474
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/394 (52%), Positives = 277/394 (70%), Gaps = 14/394 (3%)
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD+WL+N+CTVK+P++ + I K + K +V+AGCVPQG + ++G+SIVGVQQI
Sbjct: 8 ADLWLLNSCTVKNPAEESFKNEIKKAQELNKYVVLAGCVPQGQPRGEFMKGLSIVGVQQI 67
Query: 156 DRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTY 208
DRVVEVVEETLKGH VRL +KKL L+LPK+R+N +EI+ IN GCL CTY
Sbjct: 68 DRVVEVVEETLKGHSVRLFGKKKLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQCTY 127
Query: 209 CKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268
CKTKHARG LGSY E +V RV+ +GV E+WL+SEDTGAYG+DIGV LP LL I+
Sbjct: 128 CKTKHARGELGSYPPEEIVARVKQSFEEGVVEIWLTSEDTGAYGKDIGVTLPELLWQIIE 187
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
+PP G ++RIGMTNPP+I E+L E+A++L HP VYSFLH+PVQSGS+ VL M REY
Sbjct: 188 VIPPGG--LMRIGMTNPPYIKEYLDEMAKILNHPRVYSFLHIPVQSGSNNVLHDMKREYR 245
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ DF+ V+ L + VP + IATDIICGFP ET EDF + L++EY+FP + I+QF+PRP
Sbjct: 246 IEDFKNTVNFLKDRVPRLTIATDIICGFPTETLEDFADSCALVQEYQFPSLFINQFFPRP 305
Query: 389 GTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----G 443
GTPAA MK+VP+ VK+R+R ++ +F+++ PY G + I ITE A D +H
Sbjct: 306 GTPAANMKRVPTDEVKRRTRVISDIFQSYLPYENQLGEHQTILITENAKDAVHFVGHNKF 365
Query: 444 YVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
Y QVL+ + +++G V+I G+ + G ++
Sbjct: 366 YDQVLIKAEPDLMGKLVEVEIYETGKHFIKGRLV 399
>gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140, partial [Aureococcus
anophagefferens]
Length = 446
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/444 (49%), Positives = 294/444 (66%), Gaps = 21/444 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN---SEEADIWLINTCTVKSPSQ 111
+P T+ +Y++TFGCSHN SDSEYM G L++ GY ++ + ++ AD W++N+CTVK PSQ
Sbjct: 3 LPETKRVYVRTFGCSHNVSDSEYMCGLLASEGYEVSTDRADADAADAWVVNSCTVKDPSQ 62
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---------KELEGVSIVGVQQIDRVVEVV 162
+A + + K +VV+GC+PQG R L EL+G S VG++QI RV E V
Sbjct: 63 AAFMKEVRRGMKDGKAVVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIGRVNEAV 122
Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
L+G L LP+L+LPKVR N VEI+P++ GCLGAC YCKT+HARG LGSY
Sbjct: 123 AAALRGETFHALGSGPLPSLELPKVRANALVEIVPLSSGCLGACAYCKTRHARGALGSYA 182
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ +V RV +ADGV EVWLSSEDTGAYG D+G +L LL A++ L MLR+GM
Sbjct: 183 LADIVARVDGALADGVGEVWLSSEDTGAYGIDLGTSLGALLEALLPVLEAHPHGMLRVGM 242
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA--MNREYTLSDFRTVVDTLI 340
TNPP++L+ L+ + L H VY+FLHVPVQSGSDAVL+ MNREYT++DFR VVD L
Sbjct: 243 TNPPYVLDQLEVLGRCLNHAQVYAFLHVPVQSGSDAVLAKDRMNREYTVADFRAVVDGLA 302
Query: 341 ELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
V G+ + TD+ICGFPGETD+DF+ T L+++Y F ++ISQFY RPGTPAA MK+V
Sbjct: 303 ARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINISQFYARPGTPAASMKRVH 362
Query: 400 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHL-----GYVQVLVPSTG 453
+A VK RSR L+++ + F PY G+ G V E+A G L Y +VLVP
Sbjct: 363 TATVKDRSRRLSALTQTFRPYDGLVGTVVACAAHAEVADGGARLVCHTKTYAKVLVPFDR 422
Query: 454 NMLGTSALVKITSVGRWSVFGEVI 477
+++G V+I + RW V G V+
Sbjct: 423 SLVGARFEVRIGAAHRWHVDGVVL 446
>gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum]
Length = 493
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/378 (52%), Positives = 270/378 (71%), Gaps = 16/378 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455
Query: 401 AVVKKRSRELTSVFEAFT 418
V K RS E+T+ F++F
Sbjct: 456 GVSKSRSSEITNTFQSFN 473
>gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Homo sapiens]
Length = 488
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/398 (52%), Positives = 280/398 (70%), Gaps = 25/398 (6%)
Query: 87 YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 146
+ +T+N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G
Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81
Query: 147 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPIN 199
+SI+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN
Sbjct: 82 LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 259
GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201
Query: 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319
P LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259
Query: 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379
L M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP +
Sbjct: 260 LMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSL 319
Query: 380 HISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADG 439
I+QFYPRPGTPAA+M++VP+ V+ +R + L + E+F + ++
Sbjct: 320 FINQFYPRPGTPAAKMEQVPAQVIGERQQVLVTE-ESFD---------SKFYVAH----- 364
Query: 440 IHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
+ Y QVLVP +G V I G+ + G+ +
Sbjct: 365 -NQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401
>gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens]
Length = 487
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/398 (52%), Positives = 280/398 (70%), Gaps = 25/398 (6%)
Query: 87 YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 146
+ +T+N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G
Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81
Query: 147 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPIN 199
+SI+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN
Sbjct: 82 LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 259
GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201
Query: 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319
P LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259
Query: 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379
L M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP +
Sbjct: 260 LMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSL 319
Query: 380 HISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADG 439
I+QFYPRPGTPAA+M++VP+ V+ +R + L + E+F + ++
Sbjct: 320 FINQFYPRPGTPAAKMEQVPAQVIGERQQVLVTE-ESFD---------SKFYVAH----- 364
Query: 440 IHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
+ Y QVLVP +G V I G+ + G+ +
Sbjct: 365 -NQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401
>gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
Length = 447
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/400 (51%), Positives = 288/400 (72%), Gaps = 9/400 (2%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MAG LSA G+ LT+ E+A +W++N+CTVK+PS++ ++ ++ + + K ++VAGCV Q
Sbjct: 1 MAGLLSAAGHQLTNKKEDASLWILNSCTVKTPSETQLENMVREARKLNKFIIVAGCVSQA 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEIL 196
+L+ L+G+SIVGV+QI+ V + VEETLKG+ VR L R+K + L LPK+R+NKFVEIL
Sbjct: 61 EPNLRFLDGISIVGVKQIECVTQAVEETLKGNCVRFLSRRKQNSNLLLPKIRKNKFVEIL 120
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
I+ GCL CTYCKTK ARG+L SY ++SL+ R R ADG KE+WL+SED GA+GRDI
Sbjct: 121 AISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDID 180
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
+ LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS S
Sbjct: 181 MVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSAS 238
Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
DAVLS M REYT +DF VVD +I+ VP + IATD IC +P ET+ DF +++ L+++Y+F
Sbjct: 239 DAVLSDMKREYTCTDFCRVVDYMIQNVPNIYIATDFICAYPTETESDFEESMALVRKYRF 298
Query: 377 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GRVERIWITEI 435
P + I+QFYPR GTPAA +KK+ + ++R+ E++S+F +++ Y G R+ + E+
Sbjct: 299 PSLFINQFYPRIGTPAANLKKIDTIEARRRTAEMSSLFRSYSRYNKERIGEKHRVLVCEL 358
Query: 436 AADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRW 470
A D H Y L+PS +LG V+IT V ++
Sbjct: 359 ATDQQHYVGHNKHYEHFLIPSKKCLLGKWVQVRITDVSKF 398
>gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis]
Length = 464
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/379 (53%), Positives = 269/379 (70%), Gaps = 14/379 (3%)
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
Q I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH
Sbjct: 4 QDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHS 63
Query: 171 VRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY +
Sbjct: 64 VRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPI 123
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ LV R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMT
Sbjct: 124 DELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMT 181
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
NPP+ILEHL+E+A++L HP VY+FLH+PVQ SD+VL M REY ++DF+ VVD L E V
Sbjct: 182 NPPYILEHLEEMAKILNHPRVYAFLHIPVQPASDSVLMEMKREYCVADFKRVVDFLKEKV 241
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
PG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V
Sbjct: 242 PGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVK 301
Query: 404 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGT 458
K+R+++L+ VF +++PY G +++ +TE + D + Y QVLVP +G
Sbjct: 302 KQRTKDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGK 361
Query: 459 SALVKITSVGRWSVFGEVI 477
V I G+ + G+ +
Sbjct: 362 MVEVDICESGKHFMKGQPV 380
>gi|403223832|dbj|BAM41962.1| uncharacterized protein TOT_040000341 [Theileria orientalis strain
Shintoku]
Length = 873
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/445 (46%), Positives = 293/445 (65%), Gaps = 11/445 (2%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
L DN + + S P IY K FGCSHN SD EYM G L +GY + D E++ +
Sbjct: 433 LSDNSMDQLYDAS--TPELTKIYFKNFGCSHNISDGEYMLGLLVEYGYKIVDTMEKSHLV 490
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDR 157
+IN+CTVK PS+ AM T+I + P+VV+GCVPQ ++ +S++G+ QIDR
Sbjct: 491 IINSCTVKGPSEEAMVTMIKSAVMSYLPVVVSGCVPQADQNNPVFNNPLISLLGITQIDR 550
Query: 158 VVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
+VEVVE +L+G+++ LL +K LP LDLPK+RRNK +EI+P++ GCLG+CT+CKTKH+RG
Sbjct: 551 IVEVVENSLQGNKMVLLEKKDLPRLDLPKIRRNKLIEIIPLSTGCLGSCTFCKTKHSRGV 610
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
LGSY +E ++ RV + + +GVKE+WL+SED GAYG DIG NL LL +IV LP TM
Sbjct: 611 LGSYDIEIILDRVESCVNEGVKEIWLTSEDLGAYGIDIGTNLVTLLRSIVQVLP--QGTM 668
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
LR+GM+NPPFI +++ EI E+L H VY F+H+PVQS S++VL MNREY + +F +V
Sbjct: 669 LRLGMSNPPFIKKYIDEICEILLHDNVYEFIHIPVQSFSNSVLKKMNREYKVEEFLHLVK 728
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
T+ VP IATD+I GFP E E T N+++E K P V+ISQ+Y R GT A +MK+
Sbjct: 729 TIRTKVPNCMIATDVISGFPTEKPEHHMATRNMLEELKLPVVNISQYYARKGTIACKMKQ 788
Query: 398 VPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQV-LVPST 452
+PS V K R+R++T+VF ++ +G+V +++ +I +G YV+V LV T
Sbjct: 789 IPSKVRKGRTRDITNVFMSYETNSKYKGQVIKVYFNQINCHYQLIGHDKHYVKVMLVHLT 848
Query: 453 GNMLGTSALVKITSVGRWSVFGEVI 477
GT VK+ +W + G ++
Sbjct: 849 DKYFGTVQYVKVVKTTKWHLEGIIV 873
>gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva]
Length = 750
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 289/430 (67%), Gaps = 10/430 (2%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PG +Y+K FGCSHN SDSEYM G +S GYA+TD + D+ +IN+CTVK+PS+ M
Sbjct: 323 PGEVVVYLKNFGCSHNISDSEYMLGIISESGYAITDTMDSCDLVIINSCTVKNPSEHGMI 382
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSR--DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I + K ++V GC+PQ + + +S++G+ QI+++V V+E L G+ V +
Sbjct: 383 NYINQGLKLGKKIIVTGCIPQSDKLHPIFNNNNISLLGIMQIEKIVYVIENMLNGNRVVM 442
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +KKLP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY +ES++ RV +
Sbjct: 443 LEKKKLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYEIESILDRVESC 502
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WL+SED GAYG D+G N+ LL++I+A LP D MLR+GM NPP+I +++
Sbjct: 503 ISEGVKEIWLTSEDLGAYGIDLGTNIITLLHSIIAVLPKD--IMLRLGMCNPPYIKKYIS 560
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ E+LRH V+ F+H+PVQS SD+VL MNREY L DF +V + E VP IATDII
Sbjct: 561 EVCEILRHENVFEFIHIPVQSCSDSVLEKMNREYKLEDFLHIVSVIKEKVPNCTIATDII 620
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
CGFP ET ED TV+ +++ K ++ISQ+Y R GT ++ MK++ + V K RSRE+T+V
Sbjct: 621 CGFPTETHEDHQATVDTLRDLKLSVINISQYYSRKGTVSSGMKELDNNVKKNRSREVTNV 680
Query: 414 FEAFTPYLGMEGRVERIWITEIAAD---GIHLGYVQVLVPSTGN---MLGTSALVKITSV 467
F ++ + + I D G + Y++++V + + LGT+ VK+ +
Sbjct: 681 FMSYENNSKFLNEQFKAYFNHINGDQLVGYNKYYIKLIVKNLKDPESYLGTTQHVKVINT 740
Query: 468 GRWSVFGEVI 477
+W + E++
Sbjct: 741 HKWHLECEIL 750
>gi|358334470|dbj|GAA52927.1| CDKAL1-like protein [Clonorchis sinensis]
Length = 659
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/557 (42%), Positives = 315/557 (56%), Gaps = 112/557 (20%)
Query: 29 VNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY- 87
V ++ + L D +++ IP ++++T+GC+HN SDSEYMAG L+ +GY
Sbjct: 22 VKVRFRTRRQNLADTDSDSVTTMA--IPEHYRVFVQTWGCAHNTSDSEYMAGLLAQYGYQ 79
Query: 88 ---------------ALTDNSE-----------------------------------EAD 97
A ++NSE EAD
Sbjct: 80 VILGGSTKDSHEPVSAQSNNSECECSSGLAGDCCQKQEDKGCCTMPGLLTADERAKQEAD 139
Query: 98 IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 157
+W++N+CTVK P++ + K LVVAGCVPQ L+GVSI+GVQQIDR
Sbjct: 140 LWVLNSCTVKGPAEDHFRNAVKAGMRMGKRLVVAGCVPQSHPAADYLKGVSIIGVQQIDR 199
Query: 158 VVEVVEETLKGHEVRLL--------------HRKKL--PALDLPKVRRNKFVEILPINVG 201
VVEVVEETL+G+ VR L R++L LDLPK+RRN +EIL ++ G
Sbjct: 200 VVEVVEETLQGNTVRFLDKKWAVSGDGDSHSERRRLGGARLDLPKIRRNPLIEILAVSTG 259
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG----- 256
CL ACTYCKTKHARG L SY +E L+ R + ADGVKE+WL+SED GAYGRD+
Sbjct: 260 CLNACTYCKTKHARGVLASYPIEELLERAKQAFADGVKELWLTSEDLGAYGRDLDRTTSV 319
Query: 257 -------------VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 303
+ L LL+ +V L P+G MLR+GMTNPP+ILE L+EIA+VL HP
Sbjct: 320 YSCPSMAARFPQCLTLADLLSGLV-RLIPEGC-MLRLGMTNPPYILEQLREIADVLSHPR 377
Query: 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV--------------DTLIELVPG---M 346
VY+FLHVPVQSGSDAVL M REYT+ +F VV D + V G +
Sbjct: 378 VYAFLHVPVQSGSDAVLDCMKREYTVDEFSHVVTYLQDHIPPPPLPPDATDDAVNGSGTL 437
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
+ATDIICGFP ET+ DF +TV L++ ++FP ++I+QF+ RPGTPAA M +K +A VKK
Sbjct: 438 TVATDIICGFPNETEADFAETVKLVERFRFPVLYINQFFARPGTPAASMIRKATTAEVKK 497
Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSA 460
R+R L +F A+ PY G +G + R+ +TE + DG Y QVLVP + G
Sbjct: 498 RTRRLHDLFRAYKPYEGRQGSLVRVLVTETSHDGRFWVGHTKAYEQVLVPKIPEVYGRII 557
Query: 461 LVKITSVGRWSVFGEVI 477
LV+IT ++ + +++
Sbjct: 558 LVRITECDKFFMRSDIV 574
>gi|340054214|emb|CCC48509.1| putative tRNA modification enzyme, fragment [Trypanosoma vivax
Y486]
Length = 514
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/459 (44%), Positives = 294/459 (64%), Gaps = 22/459 (4%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
+HD + + + + + + T + EYMAG L GY++TD E AD +
Sbjct: 10 MHDGDIEDILCNNATLNVSSSRIVNTLNTRQRRRLPEYMAGLLVQSGYSVTDEFEHADAY 69
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159
L+N+CTVK+PS+ +++ + + KPLVVAGCVPQ K+ VSI+GV+ IDRV
Sbjct: 70 LLNSCTVKNPSEEHFVSMMNRVRLTGKPLVVAGCVPQADPLNKQWSDVSIIGVRSIDRVC 129
Query: 160 EVVEETLKGHEVRLL----HRKK------------LPALDLPKVRRNKFVEILPINVGCL 203
VV E L+G+ VRL+ H++ LPALDLPKVR N+++EI+PI+VGCL
Sbjct: 130 YVVHEALQGNCVRLIGLSGHQEASDSGGRSRETDTLPALDLPKVRHNRYIEIIPISVGCL 189
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
CTYCKTK ARG L SY +E +V RVR V+ +GVKE+ L+SED+GAYG DIG ++ LL
Sbjct: 190 NNCTYCKTKQARGDLRSYPIEKIVERVREVLREGVKEIRLTSEDSGAYGIDIGTDVVQLL 249
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
A+ AEL MLR+GM+NPP++L H+ ++A +L+HP +Y F+H+PVQSGS+ +L+AM
Sbjct: 250 RAVAAELS-GKDVMLRVGMSNPPYLLRHVNDLAVLLKHPNIYEFVHIPVQSGSNRILNAM 308
Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
REYT+ +F V+ + VP + ++TDIIC FPGE + ++ +T++L + F ++I++
Sbjct: 309 LREYTVEEFCLCVEAIRSAVPRVTLSTDIICAFPGEGESEWRETMDLCRRINFEIINITR 368
Query: 384 FYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL- 442
FYPR TPAA MK++P+ + K R+ ELT+ F ++ Y M G V RI + E A D HL
Sbjct: 369 FYPRRNTPAAAMKQIPTNIAKSRTTELTNFFNSYRTYDSMVGEVHRITLLETAHDKHHLV 428
Query: 443 ----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
YVQVLV ++G + V I+S ++SV G V+
Sbjct: 429 GHTKNYVQVLVDPASALMGETVTVVISSASKYSVVGRVL 467
>gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Meleagris gallopavo]
Length = 327
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 239/308 (77%), Gaps = 9/308 (2%)
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAHEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD 60
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 61 NGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQ 120
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHL 178
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IATDI
Sbjct: 179 EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDI 238
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L+
Sbjct: 239 ICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQ 298
Query: 413 VFEAFTPY 420
+F ++ PY
Sbjct: 299 LFHSYNPY 306
>gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata]
Length = 750
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/436 (44%), Positives = 281/436 (64%), Gaps = 23/436 (5%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P IY+K FGCSHN SDSEYM G +S GY +T+N EE D+ +IN+CTVK+PS+ AM
Sbjct: 312 PSEVKIYLKNFGCSHNISDSEYMLGLISESGYTITENIEECDVVIINSCTVKNPSEHAMV 371
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRD-------------LKELEGVSIVGVQQIDRVVEVV 162
I + K ++V GC+PQ + L +L VG+ QID+++ V+
Sbjct: 372 NYINQGLKLNKRIIVTGCIPQSDKKHPVLSTSVTNVQFLNKLNNS--VGIMQIDKIIYVI 429
Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E + G+ V LL +K LP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY
Sbjct: 430 ENVMNGNRVVLLEKKSLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYE 489
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+E+++ RV + +++GVKE+WL+SED GAYG D+G N+ LL +I+ LP + MLR+GM
Sbjct: 490 IEAILDRVESSVSEGVKEIWLTSEDLGAYGIDLGTNIITLLYSIINILPQN--IMLRLGM 547
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
NPP+I +++ EI E+L H V+ F+H+PVQS SDAVL MNREY L DF +V +
Sbjct: 548 CNPPYIKKYINEICEILSHDNVFEFIHIPVQSCSDAVLEKMNREYLLEDFLYIVSVIKAK 607
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P IATDIICGFP ET++D TV +++ K ++ISQ+Y R GT ++ MK++ + V
Sbjct: 608 LPNCTIATDIICGFPTETEQDHQITVQTLQQLKLSIINISQYYSRKGTISSSMKELDNNV 667
Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAAD---GIHLGYVQVLVPSTGN---ML 456
K RSRE+T+VF ++ V +++ + D G + Y++V+V N L
Sbjct: 668 KKNRSREITNVFMSYENNSKFINSVFKVFFNHMNGDQLVGYNKYYIKVIVKGLENPNTFL 727
Query: 457 GTSALVKITSVGRWSV 472
GT VK+ + +W +
Sbjct: 728 GTVQNVKVVNTHKWHL 743
>gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni]
gi|350644302|emb|CCD60954.1| radical sam proteins, putative [Schistosoma mansoni]
Length = 810
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/548 (40%), Positives = 304/548 (55%), Gaps = 102/548 (18%)
Query: 25 NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA 84
+ V V ++ KP ++S+ LS +P ++++T+GC+HN SDSEYM G L
Sbjct: 17 STVLVKTRFRNKKP-----NISEDLCLSSNLPEKFHVFVQTWGCAHNTSDSEYMTGLLVK 71
Query: 85 FGYALT--------------------------------------------------DNSE 94
+GY +T D +
Sbjct: 72 YGYRVTLDGSQITNGCESEANISSTSDFACGCQDNGDQCCSKEKNSDKGNVVLSNCDAKK 131
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
AD+W++N+CTVK P++ + + K +V +GCVPQ L+GVS++GV Q
Sbjct: 132 NADVWVLNSCTVKGPAEDHFRNAVLEGIKLGKRVVASGCVPQSRPGADYLKGVSVIGVHQ 191
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKLP----ALDLPKVRRNKFVEILPINVGCLGACTYCK 210
IDR+VEVVEETL+ H ALDLPK+RRN +EIL I+ GCL ACTYCK
Sbjct: 192 IDRIVEVVEETLQESSSSATHSSSSSLAGIALDLPKIRRNPLIEILAISTGCLNACTYCK 251
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------------- 256
TK ARG L SY +E L+ R + +GVKE+WL+SED GAYGRD+
Sbjct: 252 TKQARGILASYPIEQLLDRAKQAFKEGVKELWLTSEDLGAYGRDLDRTTSSLICPGLSEK 311
Query: 257 ----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 312
+ L LL +V +P MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PV
Sbjct: 312 WSHHITLADLLAGLVPIIP--AGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPV 369
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIE------LVPG-----------MQIATDIICG 355
QSGSDAVL AM REYT+ +F +VVD L++ L PG + IATD+ICG
Sbjct: 370 QSGSDAVLDAMKREYTMEEFSSVVDYLMQNVKPPNLPPGAAHDTVNGSGTLTIATDVICG 429
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 414
FP ET+ DFN+TV LI++Y+FP +HI+QF+PRPGTPAA M +K S+ VK R+R L +F
Sbjct: 430 FPTETNNDFNETVELIEKYQFPVLHINQFFPRPGTPAANMSRKANSSEVKSRTRRLHDLF 489
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGR 469
++ Y G G R+ ITE + DG Y Q+L+P ++ G LV+I +
Sbjct: 490 RSYRTYDGRVGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKDPDVYGRIVLVRIIECDK 549
Query: 470 WSVFGEVI 477
+ + G +I
Sbjct: 550 FFMRGIII 557
>gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
Length = 686
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 250/372 (67%), Gaps = 38/372 (10%)
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
A++D+ + AD+WLINTCTVK+P+ M TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTVKAPT---MGTLIRKGKAASIPLVDSWMRSSGFKRSR----- 53
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
Q+ V ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACT
Sbjct: 54 ---SCQRHRSAVNTAGETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACT 110
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YCKTKHARGHLGSYTV++ V R++TV+++G RDIG N+P LL A+V
Sbjct: 111 YCKTKHARGHLGSYTVDTPVQRLKTVVSEG---------------RDIGANIPALLRALV 155
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
A LP N P + HL HPCVYSFLHV VQSG D+VL M REY
Sbjct: 156 AVLP-------HRQKYNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREY 206
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T S+FR +VDTL LVP + IATDIICGFPGET EDF++ + LI+E FPQVHISQFYPR
Sbjct: 207 TFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIRECTFPQVHISQFYPR 266
Query: 388 PGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQV 447
PGTPAA MK+VP+ VKKRSR LTS+FE+FTPY GME + R+W+T AADGIHL V +
Sbjct: 267 PGTPAALMKRVPTLEVKKRSRSLTSLFESFTPYAGME-KTYRVWVTNTAADGIHL--VGL 323
Query: 448 LVPSTGNMLGTS 459
ST + G S
Sbjct: 324 CTSSTSSCTGPS 335
>gi|345312696|ref|XP_001514441.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Ornithorhynchus anatinus]
Length = 448
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/370 (53%), Positives = 265/370 (71%), Gaps = 14/370 (3%)
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K + K +V+AGCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAQEEDKKVVLAGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETVKGHSVRLLGQKKD 60
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 61 NGKRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQ 120
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHL 178
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+ +A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDI
Sbjct: 179 EAMAKILSHPRVYAFLHIPVQSASDSVLMGMKREYCVADFKRVVDFLKEKVPGITIATDI 238
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFPGETDEDF TV L+++Y+FP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 239 ICGFPGETDEDFQDTVKLVEDYRFPSLFINQFYPRPGTPAAKMQQVPAQVKKQRTKELSQ 298
Query: 413 VFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSV 467
+F ++ PY G +++ +TE + D + Y QVLVP +G V I
Sbjct: 299 LFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPQFMGKMVEVDIYES 358
Query: 468 GRWSVFGEVI 477
G+ + G+ +
Sbjct: 359 GKHFLKGQPV 368
>gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
Length = 438
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/433 (47%), Positives = 275/433 (63%), Gaps = 15/433 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + T S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRIAVPGISIATDIIC 305
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIH-----LGYVQVLVP--STGNMLGTSALVKITSV 467
+++ PY + G+ +WI E+A DGI+ + +VQV+VP N+LG S VKI
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKIIEA 425
Query: 468 GRWSVFGEVIKIL 480
G++ V E+I+IL
Sbjct: 426 GKFFVRSEIIEIL 438
>gi|449705503|gb|EMD45533.1| RNA modification enzymes MiaBfamily protein [Entamoeba histolytica
KU27]
Length = 438
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/433 (46%), Positives = 275/433 (63%), Gaps = 15/433 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + T S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I +L PC + FLH+P+QSGS ++L AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSILDAMKRKYTREEFDDVCNRLRIAVPGISIATDIIC 305
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIH-----LGYVQVLVP--STGNMLGTSALVKITSV 467
+++ PY + G+ +WI E+A DGI+ + +VQV+VP N+LG S VKI
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKIIEA 425
Query: 468 GRWSVFGEVIKIL 480
G++ V E+I+IL
Sbjct: 426 GKFFVRSEIIEIL 438
>gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760]
gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760]
Length = 438
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/433 (46%), Positives = 277/433 (63%), Gaps = 15/433 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + T S + +IN+CTVK+PSQ A++
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSETPISSKYKAVVINSCTVKNPSQQAIE 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACQCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+ I
Sbjct: 129 ERGALVNID-EHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEDLVKRVQHSI 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + +G MLRIGM NPP+I+++ KE
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINETFPHMLECICEVV--EGKAMLRIGMVNPPYIIKYFKE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSSSVLEAMKRKYTREEFDDVCNRLRISVPGISIATDIIC 305
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFP ETDED +T+ I++++FP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIQKHQFPIVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTEIF 365
Query: 415 EAFTPYLGMEGRVERIWITEIAADGI-----HLGYVQVLVP--STGNMLGTSALVKITSV 467
+++ PY + G+ +WI E+A DGI ++ +VQV+VP N+LG S VKI
Sbjct: 366 DSYLPYTNLIGKEYIVWINEMAHDGINYAGHNISFVQVIVPYYEKENLLGKSVRVKIIEA 425
Query: 468 GRWSVFGEVIKIL 480
G++ V E+I+IL
Sbjct: 426 GKFFVRSEIIEIL 438
>gi|407043368|gb|EKE41912.1| MiaB family tRNA modifying enzyme, archaeal-type protein [Entamoeba
nuttalli P19]
Length = 438
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 203/433 (46%), Positives = 275/433 (63%), Gaps = 15/433 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + T S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFDE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRISVPGISIATDIIC 305
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIH-----LGYVQVLVP--STGNMLGTSALVKITSV 467
+++ PY + G+ +WI E+A DGI+ + +VQV+VP N+LG S VKI
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKIIEA 425
Query: 468 GRWSVFGEVIKIL 480
G++ V E+I+IL
Sbjct: 426 GKFFVRSEIIEIL 438
>gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 867
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/344 (54%), Positives = 247/344 (71%), Gaps = 10/344 (2%)
Query: 137 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 257 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
SGS+ VL AMNREYT F VV+TL++ P M IATDIICGFPGETDED +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747
Query: 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 433
+KFP V+ISQFYPRPGTPAA MK++PS VVK+RSRE+T++FE++T Y M + +W +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSREVTALFESYTCYDWMLHTTQMVWFS 807
Query: 434 EIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSV 472
+ H YV+VL P +LGT L+++T+V +W V
Sbjct: 808 STSEKSDHTVGQTKQYVKVLTPRDDALLGTCCLMRVTAVEKWHV 851
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 56 PGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
PG + I++KTFGC+HNQSDSEYM G L A GY E+AD+ LIN+CTVKSPS+ A+
Sbjct: 275 PGKRQRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFAL 334
Query: 115 DTLI 118
++I
Sbjct: 335 YSVI 338
>gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 867
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/344 (54%), Positives = 247/344 (71%), Gaps = 10/344 (2%)
Query: 137 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 257 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
SGS+ VL AMNREYT F VV+TL++ P M IATDIICGFPGETDED +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747
Query: 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 433
+KFP V+ISQFYPRPGTPAA MK++PS VVK+RSRE+T++FE++T Y M + +W +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSREVTALFESYTCYDWMLHTTQMVWFS 807
Query: 434 EIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSV 472
+ H YV+VL P +LGT L+++T+V +W V
Sbjct: 808 STSEKSDHTVGQTKQYVKVLTPRDDALLGTCCLMRVTAVEKWHV 851
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 56 PGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
PG + I++KTFGC+HNQSDSEYM G L A GY E+AD+ LIN+CTVKSPS+ A+
Sbjct: 275 PGKRQRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFAL 334
Query: 115 DTLI 118
++I
Sbjct: 335 YSVI 338
>gi|401408469|ref|XP_003883683.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
Length = 863
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/342 (54%), Positives = 244/342 (71%), Gaps = 10/342 (2%)
Query: 139 RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPI 198
RDL +L SIVGV IDR+VE VEE LKG+ +RL +K+LP+LDLPK+RRN VEI+PI
Sbjct: 508 RDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKKRLPSLDLPKIRRNALVEIVPI 565
Query: 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN 258
+ GCLG+CTYCKTKHARG LGSY E++ R+ + DGVK++WL+SED+GAYG D +
Sbjct: 566 STGCLGSCTYCKTKHARGELGSYPEEAIETRIEASLLDGVKQIWLTSEDSGAYGLDRQSS 625
Query: 259 LPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+QSG
Sbjct: 626 LTSLLARLLRNVFDRRADPSLMLRVGMSNPPFLLQQLKSAVQVFAHPNVFEFLHLPLQSG 685
Query: 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375
S+ VL AMNREYT F VV+TL++ P M IATDIICGFPGET+ED +T+ +IK++K
Sbjct: 686 SNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETEEDHEKTLAIIKKFK 745
Query: 376 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEI 435
FP V+ISQFYPRPGTPAA MK++PS +VK+RSRE+T++FE++T Y M + +W T
Sbjct: 746 FPVVNISQFYPRPGTPAASMKQLPSQIVKRRSREVTALFESYTCYDWMLHTTQMVWFTGT 805
Query: 436 AADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSV 472
+ H YV+VL P +LGT + IT+V +W V
Sbjct: 806 SEKSHHTVGQTKQYVKVLTPRDDALLGTGCPMYITAVDKWHV 847
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 56 PGTET-IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
PG + IY+KTFGC+HNQSDSEYM G L A GY EEAD+ LIN+CTVKSPS+ A+
Sbjct: 268 PGKQQKIYVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEEADVCLINSCTVKSPSEFAL 327
Query: 115 DTLI 118
++I
Sbjct: 328 YSVI 331
>gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei]
Length = 784
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/363 (48%), Positives = 251/363 (69%), Gaps = 13/363 (3%)
Query: 127 PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLP 185
++V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+LP
Sbjct: 423 KIIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLP 482
Query: 186 KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLS 244
K+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+WL+
Sbjct: 483 KIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVSRIKYVCTKDNIKEIWLT 542
Query: 245 SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304
SED+GAYG D+ N+ LL I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +
Sbjct: 543 SEDSGAYGIDLNTNIVNLLKEIL-DYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHKNM 601
Query: 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 364
Y F+H+PVQSGS+ VL MNREY + DF +VD L + VP M IATDIICGFP E++ D
Sbjct: 602 YEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDH 661
Query: 365 NQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGM 423
+TVNLIK+YKFP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F ++ Y +
Sbjct: 662 LETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYKFL 721
Query: 424 EGRVERIWITEIAADGIHL-----GYVQVLV----PSTGNMLGTSALVKITSVGRWSVFG 474
+ ++++ TEI++ H+ YV+VL+ N+LG A KI S +W V
Sbjct: 722 QNTIQKVLFTEISSKSEHIIGHTKQYVKVLLHNNNSENENLLGKFATCKIVSTHKWHVIA 781
Query: 475 EVI 477
E++
Sbjct: 782 ELV 784
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP IY K+FGC+HN SDSE+M G LS +G+ N ++ DI ++N+CTVK+PS+ +M
Sbjct: 216 IPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEESM 275
Query: 115 DTLI 118
T+I
Sbjct: 276 KTII 279
>gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii]
Length = 817
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/425 (45%), Positives = 271/425 (63%), Gaps = 26/425 (6%)
Query: 67 GCSHN--QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
GC+ N +SD + AG + +L N + + IN +K + S D I
Sbjct: 405 GCATNNDKSDPKTKAGCCNGENESLVSNVKNK-VEGINNEIIKKRTNSGKDIKI------ 457
Query: 125 KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALD 183
+V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+
Sbjct: 458 ----IVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLN 513
Query: 184 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVW 242
LPK+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+W
Sbjct: 514 LPKIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVNRIKHVYTKDNIKEIW 573
Query: 243 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 302
L+SED+GAYG D+ N+ LL I+ E D M+RIGMTNPP+IL+H+K+I ++L+H
Sbjct: 574 LTSEDSGAYGIDLNTNIVNLLKEIL-EYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHK 632
Query: 303 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 362
+Y F+H+PVQSGS+ VL MNREY + DF +VD L + VP M IATDIICGFP E++
Sbjct: 633 NMYEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESEN 692
Query: 363 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYL 421
D +TVNLIK+YKFP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F ++ Y
Sbjct: 693 DHLETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYK 752
Query: 422 GMEGRVERIWITEIAADGIHL-----GYVQV----LVPSTGNMLGTSALVKITSVGRWSV 472
++ ++ + TEI++ H+ YV+V N+LG A KI S +W V
Sbjct: 753 FLQDTIQNVLFTEISSKSEHIIGHTKQYVKVLLHNNNNENENLLGKFATCKIVSTHKWHV 812
Query: 473 FGEVI 477
E++
Sbjct: 813 IAELV 817
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P IY K+FGC+HN SDSE+M G LS +G+ N E+ DI ++N+CTVK+PS+ +M
Sbjct: 248 PENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFKFVKNIEDCDICIVNSCTVKNPSEESMK 307
Query: 116 TLI 118
T+I
Sbjct: 308 TII 310
>gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Ailuropoda melanoleuca]
Length = 429
Score = 364 bits (935), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 181/338 (53%), Positives = 241/338 (71%), Gaps = 18/338 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL----IELV 343
I EHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E
Sbjct: 297 ISEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKENQTEGN 356
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
P Q+ G PG F +T ++++E + Q+ +
Sbjct: 357 PNSQVR-----GVPGSLLTMFWKTQSVVEEPEQSQLKV 389
>gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus]
Length = 351
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 182/348 (52%), Positives = 245/348 (70%), Gaps = 14/348 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKE 350
>gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica]
Length = 1477
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 178/354 (50%), Positives = 240/354 (67%), Gaps = 17/354 (4%)
Query: 161 VVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
VVEETLKG+ V+LL KK L LPKVRRN +EI+ IN GCL +CTYCKTKH
Sbjct: 15 VVEETLKGNTVKLLGPKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKH 74
Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
ARG L SY ++ +V R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P
Sbjct: 75 ARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE- 133
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
M+RIGMTNPP+ILEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF
Sbjct: 134 -GCMMRIGMTNPPYILEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFC 192
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
VVDTL VP IATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA
Sbjct: 193 KVVDTLRANVPDCNIATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAA 252
Query: 394 RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVL 448
+ +++P V+K+R+++L++VF+++ P+ G EG + ITE+A D + L Y Q+L
Sbjct: 253 KWEQIPRQVIKERTKKLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLVGHTKSYHQIL 312
Query: 449 VPST-GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 501
V ++G V + + S+ G ++ + V IA N +I + ++ K
Sbjct: 313 VKGNPDELMGKRVDVVVYQTTKHSMLGRIVSVAKSV--AIAENLQIMKEKQEAK 364
>gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
Length = 750
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 178/389 (45%), Positives = 258/389 (66%), Gaps = 13/389 (3%)
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159
L+ +VK + + IAK ++V GCVPQ +D++ E VS+VGV ID++V
Sbjct: 362 LVKRASVKQMEKEGVKGAIAKAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIV 421
Query: 160 EVVEETLKGHEVRLL-HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
+VVE + G+ VR L H KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L
Sbjct: 422 DVVENVINGYNVRYLKHSKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDL 481
Query: 219 GSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
SY + ++ R++ V + +KE+WL+SEDTGAYG D+ N+ LL I+ + + M
Sbjct: 482 ASYNIPDIINRIKHVCNEENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVM 540
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+R+GMTNPP+IL+H+K+I +L+H +Y F+H+PVQSGS+ VL MNREY + DF +V+
Sbjct: 541 IRLGMTNPPYILKHIKDICNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVE 600
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
L + VP + IATDIICGFP E ++D +TV+L+K+Y+FP ++ISQFYPR GT A MKK
Sbjct: 601 NLRKDVPNITIATDIICGFPYEMEKDHLETVDLVKKYQFPILNISQFYPRRGTVAYGMKK 660
Query: 398 VPSAVVKKRSRELTSVFEAFT-PYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPS 451
+ + +VKKRSRE+T F ++T Y +EG +R+ TE++ L YV+VL+ +
Sbjct: 661 INTKIVKKRSREVTDAFLSYTNNYKFLEGTTQRVLFTEVSTKSDDLIGHTKQYVKVLLQN 720
Query: 452 TGN----MLGTSALVKITSVGRWSVFGEV 476
N +L A KI S +W V E+
Sbjct: 721 RNNENSHLLSHFANCKIVSAHKWHVVAEL 749
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 208 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 267
Query: 115 DTLI 118
T+I
Sbjct: 268 KTII 271
>gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
Length = 860
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 169/363 (46%), Positives = 249/363 (68%), Gaps = 13/363 (3%)
Query: 128 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-RKKLPALDLPK 186
++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ V+ L KK+ +L+LPK
Sbjct: 499 IIVCGCVPQAEKDMEIFENVSLVGVNNIDKIVDVVENVINGYNVQYLKTSKKMTSLNLPK 558
Query: 187 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSS 245
+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + + R+ V + +KE+WL+S
Sbjct: 559 IRKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNIRDITDRITYVCNEENIKEIWLTS 618
Query: 246 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305
EDTGAYG DI ++ LL I+ + + M+R+GMTNPP+IL+H+K+I +L+H +Y
Sbjct: 619 EDTGAYGIDINTDIVNLLKNILKSVEH-TNVMIRLGMTNPPYILKHIKDICTLLKHKNMY 677
Query: 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 365
F+H+PVQSGS+ VL MNREYT+ DF +V+ L + VP + I+TDIICGFP E+++D
Sbjct: 678 EFIHIPVQSGSNNVLKNMNREYTIEDFIFLVENLRKYVPNITISTDIICGFPYESEQDHQ 737
Query: 366 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-PYLGME 424
TV+LIK ++FP ++ISQFYPR GT A MKK+ + +VKKRSR++T F ++ Y ++
Sbjct: 738 NTVHLIKNFQFPILNISQFYPRRGTVAYNMKKINTKIVKKRSRDVTEAFLSYEHNYKFLQ 797
Query: 425 GRVERIWITEIAADGIHL-----GYVQVLVPSTGN----MLGTSALVKITSVGRWSVFGE 475
++++ TEI++ H+ YV+VL+P+ N +LG A KI S +W V E
Sbjct: 798 NTIQQVLFTEISSKSEHIIGHTKQYVKVLLPNENNKNIELLGNFATCKILSTHKWHVVAE 857
Query: 476 VIK 478
+ K
Sbjct: 858 LNK 860
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L+ +G+ EE DI ++N+CTVK+PS+ +M
Sbjct: 239 LPENYKIYFKSFGCAHNSSDSEFMMGLLANYGFKFVKKIEECDICIVNSCTVKNPSEESM 298
Query: 115 DTLIAKCK 122
T+I K
Sbjct: 299 KTIINYVK 306
>gi|341883251|gb|EGT39186.1| hypothetical protein CAEBREN_03885 [Caenorhabditis brenneri]
Length = 432
Score = 355 bits (910), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 250/354 (70%), Gaps = 10/354 (2%)
Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR 188
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + AL LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDALLSLPKMR 60
Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSSED 247
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R +GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHEEGVKELWLTSED 120
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLKELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
LH+PVQS SDAVL+ M REY+ F + D +IE VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLTDMKREYSRRHFEQIADYMIEHVPNIYIATDMILAFPTETLEDFEES 238
Query: 368 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 426
++L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T + G
Sbjct: 239 MDLVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRFTEDRIGE 298
Query: 427 VERIWITEIAADGIH-----LGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 475
V + +TEIAAD +H Y Q+LVP +G V++TSV ++S+ +
Sbjct: 299 VHNVLVTEIAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTSVTKFSMISK 352
>gi|71996771|ref|NP_740783.2| Protein Y92H12BL.1 [Caenorhabditis elegans]
gi|75017352|sp|Q8MXQ7.2|CDKAL_CAEEL RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|373220306|emb|CCD72949.1| Protein Y92H12BL.1 [Caenorhabditis elegans]
Length = 425
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 250/354 (70%), Gaps = 10/354 (2%)
Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 188
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 247
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
GA+GRDIG+ LP LL +V ++ PDGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELV-KVIPDGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
LH+PVQS SDAVL+ M REY+ F + D +I VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238
Query: 368 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 426
+ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T Y G
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRYTDERIGE 298
Query: 427 VERIWITEIAADGIH-----LGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 475
+ R+ +TE+AAD +H Y Q+LVP +G V++T+V ++S+ +
Sbjct: 299 LHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTAVTKFSMISK 352
>gi|389584604|dbj|GAB67336.1| tRNA modifying enzyme, partial [Plasmodium cynomolgi strain B]
Length = 768
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/394 (44%), Positives = 258/394 (65%), Gaps = 13/394 (3%)
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
+ D L+ VK + A+ A ++V GCVPQ +D++ E VS+VGV
Sbjct: 375 KGDSGLVKREAVKKTEKEAVKGAAATAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVSN 434
Query: 155 IDRVVEVVEETLKGHEVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
ID++V+VVE + G+ VR L + KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK
Sbjct: 435 IDKIVDVVENVINGYNVRYLKQGKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKF 494
Query: 214 ARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
ARG L SY + ++ R++ V ++ +KE+WL+SEDTGAYG D+ N+ LL I+ +
Sbjct: 495 ARGDLASYNIPDIINRIKHVCSEENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS- 553
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
+ M+R+GMTNPP+IL+H+K+I +L+H +Y F+H+PVQSGS+ VL MNREY + DF
Sbjct: 554 NSDVMIRLGMTNPPYILKHVKDICNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYQIEDF 613
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392
+V+ L + VP + IATDIICGFP E + D +TV+L+K+Y+FP ++ISQFYPR GT A
Sbjct: 614 IYLVENLRKDVPNITIATDIICGFPYEMENDHVETVDLVKKYQFPILNISQFYPRRGTVA 673
Query: 393 ARMKKVPSAVVKKRSRELTSVFEAFT-PYLGMEGRVERIWITEIAADGIHL-----GYVQ 446
MKK+ + +VKKRSRE+T F ++T Y +EG +R+ TE++ L YV+
Sbjct: 674 YGMKKINTKIVKKRSREVTDAFLSYTNNYKFLEGTTQRVLFTEVSTKSDDLIGHTKQYVK 733
Query: 447 VLVPSTGN----MLGTSALVKITSVGRWSVFGEV 476
VL+ + N +L A KI S +W V E+
Sbjct: 734 VLLQNRNNENAHLLSHFANCKIVSAHKWHVVAEL 767
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 229 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 288
Query: 115 DTLI 118
T+I
Sbjct: 289 KTII 292
>gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax Sal-1]
gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax]
Length = 799
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/372 (47%), Positives = 254/372 (68%), Gaps = 18/372 (4%)
Query: 123 SAKKP-----LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 176
SAK P ++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L +
Sbjct: 429 SAKPPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIVDVVENVINGYNVRYLKQA 488
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V ++
Sbjct: 489 KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCSE 548
Query: 237 -GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+KE+WL+SEDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I
Sbjct: 549 ENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHVKDI 607
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+L+H +Y F+H+PVQSGS+ VL MNREY + DF +V+ L + VP + IATDIICG
Sbjct: 608 CNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPNITIATDIICG 667
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP E ++D +TV+L+K+Y+FP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F
Sbjct: 668 FPYEMEKDHVETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFL 727
Query: 416 AFT-PYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGN----MLGTSALVKIT 465
++T Y +EG +R+ TE++ L YV+VL+ + N +L A KI
Sbjct: 728 SYTNNYKFLEGTTQRVLFTEVSTKSEDLIGHTKQYVKVLLQNRNNENAHLLSHFANCKIV 787
Query: 466 SVGRWSVFGEVI 477
S +W V E++
Sbjct: 788 SAHKWHVVAELV 799
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 252 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 311
Query: 115 DTLI 118
T+I
Sbjct: 312 KTII 315
>gi|405971863|gb|EKC36670.1| hypothetical protein CGI_10015051, partial [Crassostrea gigas]
Length = 354
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/322 (51%), Positives = 229/322 (71%), Gaps = 14/322 (4%)
Query: 168 GHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
GH VRL +KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGS
Sbjct: 1 GHSVRLYGQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGS 60
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y + +V R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+
Sbjct: 61 YPPDEIVARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RL 118
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
GMTNPP+ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL M REY +DFR V D L
Sbjct: 119 GMTNPPYILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLK 178
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
E VPG+ IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPGTPAA+M ++P+
Sbjct: 179 ERVPGVTIATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPA 238
Query: 401 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNM 455
+VK+R+++++ +F ++ PY ++++ +TE + D G + Y QVLVP N+
Sbjct: 239 QLVKQRTKKISELFHSYRPYDHKMSEIQQVLVTETSHDQQYYVGHNKFYDQVLVPKNENL 298
Query: 456 LGTSALVKITSVGRWSVFGEVI 477
+G V+I G+ + G+++
Sbjct: 299 MGKMVTVRIVETGKHFLKGQLL 320
>gi|440300691|gb|ELP93138.1| radical sam protein, putative [Entamoeba invadens IP1]
Length = 441
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 187/427 (43%), Positives = 268/427 (62%), Gaps = 15/427 (3%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIW--LINTCTVKSPSQSAMDTLIAK 120
TFGCSHN SDSE M L+ GY L D+ E + ++N+CTVK+PSQ +++ + K
Sbjct: 16 TFGCSHNVSDSEVMQKDLTEAGYILDKADSPLEGNYTAVVVNSCTVKNPSQQSIEQIKKK 75
Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
C+ P+V+AGCVPQ + K + SIVGV Q+ ++ + VE ++G L R L
Sbjct: 76 CEEMHIPVVLAGCVPQADPKVFKCSKNCSIVGVDQLHKIKDAVESAVRGEGATYLERGPL 135
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+D + + + ++I+ GC ACTYCKTKHARG L SY + ++ R++ I +GVK
Sbjct: 136 VDIDSYE-KSSPLIDIIVTCTGCENACTYCKTKHARGGLRSYPIIDIIKRIKKSINEGVK 194
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ L+ ED GAYG DIG P +L + + +G M+RIGM NPP+I+++ EI EV
Sbjct: 195 ELRLTGEDIGAYGMDIGDTFPHMLKEMCDVV--EGKAMIRIGMVNPPYIIKYFDEIVEVF 252
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ CVY F+H+P+QSGS VL AM R+YT +F V L + +P + IATDIICGFP E
Sbjct: 253 KRKCVYKFIHIPIQSGSTQVLEAMKRKYTREEFDDVCARLRKCIPEITIATDIICGFPTE 312
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
TDED T++ +K ++FP V+ISQ RPGTPAA+MK V S V K+RSRE+T F+++ P
Sbjct: 313 TDEDHKMTLDCLKVHQFPIVNISQMCIRPGTPAAQMKPVNSKVKKQRSREVTEYFDSYFP 372
Query: 420 YLGMEGRVERIWITEIAAD----GIH-LGYVQVLVPSTGN--MLGTSALVKITSVGRWSV 472
Y M G+ ++WI E+A D H + +VQV++ N + G SA+VKI G++ V
Sbjct: 373 YKNMVGKTCQVWINEMAHDKQNYAAHDISFVQVILAPQKNVDLFGKSAIVKIVEAGKFFV 432
Query: 473 FGEVIKI 479
GE + +
Sbjct: 433 KGEFVSL 439
>gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis]
Length = 465
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/380 (44%), Positives = 250/380 (65%), Gaps = 3/380 (0%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +T+Y+ TFGCSHN SD E M G L+ GY +T EEAD+W+INTCTV+ S +
Sbjct: 33 PDAKTVYVHTFGCSHNISDGETMKGVLAQGGYNITSKKEEADVWVINTCTVRDKSIQSFR 92
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TL + K K LVVAGC+ + L E + +GV+QI ++ E V+ +
Sbjct: 93 TLYNEAKKTGKKLVVAGCMLEADPSLSSEFHADATLGVRQIAQIKETVDSLFFPPTHHFV 152
Query: 175 H-RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
++P+L LPK+R+++ VEI+PI++GCLGACT+C+T+ ARG L SY ++ ++ RV
Sbjct: 153 SPSDEIPSLQLPKIRKDEGVEIIPISLGCLGACTFCQTRLARGKLWSYPIDEIIKRVHAA 212
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+G+ E+WL+SEDTGAYG D +L LL+ I +E+ D + M++IGMTNPPF+ L+
Sbjct: 213 KVNGISEIWLTSEDTGAYGMDRNSSLMELLDRIRSEVE-DSNVMVKIGMTNPPFLKPMLE 271
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
++ +L H YS+LH+PVQSGSDAVL MNR+Y +SDFR + L + VPG+ ++TDII
Sbjct: 272 PLSTILNHKNFYSYLHIPVQSGSDAVLKRMNRKYQVSDFREICSFLSQHVPGITLSTDII 331
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
GFP E+ ED +T+ L+++ VH S++YPRP T AAR +++P VVK R +EL+
Sbjct: 332 VGFPYESAEDHAKTMQLLRDLNLNIVHYSRYYPRPHTLAARYEQLPIDVVKSRVKELSDW 391
Query: 414 FEAFTPYLGMEGRVERIWIT 433
F+A PY + G+ +W++
Sbjct: 392 FKALHPYDELVGKEMDVWVS 411
>gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group]
Length = 558
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 177/257 (68%), Positives = 202/257 (78%), Gaps = 28/257 (10%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT QSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220
Query: 235 ADGVKEVWLSSEDTGAY 251
++GV+E+WLSSEDTGAY
Sbjct: 221 SEGVREIWLSSEDTGAY 237
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 202/321 (62%), Gaps = 37/321 (11%)
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPGETDEDF+QTVNL+K+Y FPQVHI
Sbjct: 253 AMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHI 312
Query: 382 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH 441
SQFYPRPGTPAARMKKVPS VKKRSRELTSVFE+F+PY GMEG+VERIWITEIA DG+H
Sbjct: 313 SQFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVH 372
Query: 442 L-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI------KILNQVDDKIASN 490
L GY+QVLV + +MLGTSA VKITSVGRWSVFGEVI K + +
Sbjct: 373 LVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVIEGSVVAKETQKHNHSELQE 432
Query: 491 RRISSQVRQ------DKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQVSWIDR 544
SQV + D C +C+ + + C+ P+ S G T +E S + R
Sbjct: 433 EYRPSQVEEATCCGTDSCGACTCSDAAQQCNPGPERSENSTPQSCGDATHQEAVQSKLVR 492
Query: 545 FAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNMG--EWGVVDRALLGGM 602
R + +K E+D A K+ E N+ + VD L GG+
Sbjct: 493 ---------------RNVEGAVKSSESDTA---KQVGEIQRLNVAARRFPDVDTILWGGL 534
Query: 603 LVSFLIILALLIHVGFRTLST 623
VSF + L+ + ++ ST
Sbjct: 535 AVSFATTVTLIALLAYKISST 555
>gi|402865946|ref|XP_003897161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Papio anubis]
Length = 629
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 159/289 (55%), Positives = 213/289 (73%), Gaps = 7/289 (2%)
Query: 194 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253
EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGR
Sbjct: 259 EIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGR 318
Query: 254 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
DIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQ
Sbjct: 319 DIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQ 376
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
S SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++E
Sbjct: 377 SASDSVLMEMKREYCVADFKRVVDFLKEKVPGLTIATDIICGFPGETDQDFQETVKLVEE 436
Query: 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 433
YKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ VF +++PY G +++ +T
Sbjct: 437 YKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYNHKIGERQQVLVT 496
Query: 434 EIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
E + D + Y QVLVP +G V I G+ + G+ +
Sbjct: 497 EESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDICESGKHFMKGQPV 545
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 88/113 (77%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+K
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIK 172
>gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
Length = 353
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/261 (64%), Positives = 193/261 (73%), Gaps = 24/261 (9%)
Query: 164 ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSYTV
Sbjct: 24 ETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTV 83
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
++LV R++TV+++G RDIG N+P LL A+VA LP
Sbjct: 84 DTLVQRLKTVVSEG---------------RDIGANIPALLRALVAALPHRQKY------- 121
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
N P + HL HPCVYSFLHV VQSG D+VL M REYT S+FR +VDTL LV
Sbjct: 122 NAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLV 179
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P + IATDIICGFPGET EDF++ + LI+EY FPQVHISQFYPRPGTPAA MK+VP+ V
Sbjct: 180 PEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTPAALMKRVPTLEV 239
Query: 404 KKRSRELTSVFEAFTPYLGME 424
KKRSR LTS+FE+FTPY GME
Sbjct: 240 KKRSRSLTSLFESFTPYAGME 260
>gi|388491006|gb|AFK33569.1| unknown [Lotus japonicus]
Length = 180
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 160/166 (96%)
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
MLRIGMTNPPF LEHLKEIAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVV
Sbjct: 1 MLRIGMTNPPFTLEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVV 60
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
DTL ELVPGMQIATDIICGFPGETDEDF+QTVNLIKEYKF QVHISQFYPRPGTPAARMK
Sbjct: 61 DTLTELVPGMQIATDIICGFPGETDEDFSQTVNLIKEYKFSQVHISQFYPRPGTPAARMK 120
Query: 397 KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL 442
KVPS VVK+RSRELT+VFEAFTPY GMEG+VERIWIT++A+DG+HL
Sbjct: 121 KVPSNVVKRRSRELTNVFEAFTPYSGMEGKVERIWITDVASDGVHL 166
>gi|388502314|gb|AFK39223.1| unknown [Medicago truncatula]
Length = 280
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 166/283 (58%), Positives = 205/283 (72%), Gaps = 13/283 (4%)
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
MQIATDIICGFPGETDEDF QTVNLIKEYKF QVHISQFYPRPGTPAARMKKVPS VVK+
Sbjct: 1 MQIATDIICGFPGETDEDFEQTVNLIKEYKFSQVHISQFYPRPGTPAARMKKVPSNVVKR 60
Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSA 460
RSRELT+VFE+FTPY GMEG+VERIWIT+IA DG+HL GY+QVLV + +MLG+SA
Sbjct: 61 RSRELTNVFESFTPYSGMEGKVERIWITDIATDGVHLVGHTKGYIQVLVIAPDDMLGSSA 120
Query: 461 LVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDP 520
L KITSVGRWSVFGEVI+ +N D A N+++ + QD S C +Q ++ S EP+
Sbjct: 121 LAKITSVGRWSVFGEVIETINPASDNKALNKQVPT---QDMSSLCCNQTKTCEISEEPES 177
Query: 521 SACGL--ECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSK 578
ACG CC ++ ++ N++N+ GW+LRKRKN K VE+++A GS
Sbjct: 178 CACGNVDSCCSQSTLVKTDNSRDTVVLPQNQNNKNLFGWILRKRKNLHKRVESELASGSD 237
Query: 579 KKQEWMGGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 621
KQE +M +W VD+ALLGG+ +S L I+ALL+ + F L
Sbjct: 238 LKQE---RSMRKWDFVDKALLGGISISILTIIALLVCLRFSVL 277
>gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
Length = 613
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 179/366 (48%), Positives = 221/366 (60%), Gaps = 48/366 (13%)
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
A++D+ + AD+WLINTCTVK+P+ M+TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTVKAPT---METLIRKGKAASIPLVDSWMRSSGFKRSR----- 53
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
Q+ ETLKGHE LL R LP+LDLPKV +NKFVEI+PINVGCLGACT
Sbjct: 54 ---SCQRHRSAANTAGETLKGHEAWLLRRDALPSLDLPKVCKNKFVEIIPINVGCLGACT 110
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YCKTKHARGHLGSYTV++LV R++TV+++G RDIG N+P LL A+V
Sbjct: 111 YCKTKHARGHLGSYTVDTLVQRLKTVVSEG---------------RDIGANIPALLCALV 155
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
A LP N P + HL HPCVYSFLHV VQSG D+VL M REY
Sbjct: 156 AALP-------HRQKYNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREY 206
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T S+FR +VDTL LVP + IATD+ICGFPGET EDF++ + LI+EY FPQVHISQFYPR
Sbjct: 207 TFSEFRKIVDTLTRLVPEIHIATDVICGFPGETSEDFDRIMELIREYTFPQVHISQFYPR 266
Query: 388 PGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-----------GRVERIWITEIA 436
P + + + S E P+L G+ R+W+T A
Sbjct: 267 PVFILSISLDRNTGGSNETGSNARS--EEMKPFLDKSVRIVHSLRRNGGKTYRVWVTNTA 324
Query: 437 ADGIHL 442
ADGIHL
Sbjct: 325 ADGIHL 330
>gi|440904068|gb|ELR54635.1| CDK5 regulatory subunit-associated protein 1-like 1, partial [Bos
grunniens mutus]
Length = 302
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/246 (58%), Positives = 187/246 (76%), Gaps = 9/246 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLK 293
ILEHL+
Sbjct: 297 ILEHLE 302
>gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
Length = 316
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/295 (52%), Positives = 196/295 (66%), Gaps = 31/295 (10%)
Query: 188 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 247
RRN V I P N CL CTYCKTKHARG LGSY E +V R R +GV E+WL+SED
Sbjct: 22 RRN--VLIFPSN-SCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSED 78
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
TGAYG+DIGV LP LL +V E+ P+G MLR+GMTNPP+ILEHL+E+A++L HP VY+F
Sbjct: 79 TGAYGKDIGVTLPELLWRLV-EVIPEGC-MLRVGMTNPPYILEHLEEMAKILSHPRVYAF 136
Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
LHVPVQ+ SD+VL M REY LSDF+ VVD L E VP + IATD+ICGFP ET EDF +T
Sbjct: 137 LHVPVQAASDSVLMDMRREYCLSDFKQVVDFLKERVPAVTIATDVICGFPTETAEDFEET 196
Query: 368 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRV 427
+ L++EYKFP + I+QF+PRPGTPAA+M++VP V G +
Sbjct: 197 LQLVEEYKFPSLFINQFFPRPGTPAAKMRRVPPQEV---------------------GEI 235
Query: 428 ERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
+ + +TE + D + Y QVLVP +LG V+ITS G+ + G ++
Sbjct: 236 QNVLVTEESHDKKFYVAHNKYYDQVLVPKDEKLLGKMVTVEITSTGKHYLMGRLL 290
>gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|397652439|ref|YP_006493020.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|393190030|gb|AFN04728.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
Length = 425
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 160/433 (36%), Positives = 245/433 (56%), Gaps = 28/433 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MAG L + GY + + E ADI ++N+C VK P++ + I +
Sbjct: 4 VYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D + +++GV+ IDR+V+ VE L+G + V ++
Sbjct: 64 LLDRGKKVIVTGCLPHVNPDAIDERVSAVLGVKSIDRIVQAVEYALRGEKLISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL CTYC T+ ARG L SY+ E +V V+ I G
Sbjct: 124 NLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSYSPEKIVEWVKWAIRQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F +V+ P + + TDII GFP
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
GE++E F +++ LIK K +V++S++ PRPGT AA+ K++P VVK+RSR + V
Sbjct: 301 GESEEAFQRSLELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRIMHRVRLQI 360
Query: 414 -FEAFTPYLGM--------EGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKI 464
+E Y+G EG+ + D + + Y +++P G A K+
Sbjct: 361 SYEINQRYVGRKVDILVHGEGKKGNV-------DAVTMNYKHIIIPRGEK--GEFARAKV 411
Query: 465 TSVGRWSVFGEVI 477
+ GE++
Sbjct: 412 NGATSTYLLGEIV 424
>gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5]
gi|14916852|sp|Q9UXX9.1|AMTAB_PYRAB RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5]
gi|380742568|tpe|CCE71202.1| TPA: 2-methylthioadenine synthetase [Pyrococcus abyssi GE5]
Length = 425
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/428 (37%), Positives = 249/428 (58%), Gaps = 18/428 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++ +GC+ N++D E MA L G+ + + +E +I ++N+C VK P++ + I +
Sbjct: 4 IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + D+ + I+GV+ IDR+++ VE L+G + V ++
Sbjct: 64 LLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ I+PI GCL ACTYC T+ ARG L SY+ E +VG V+ I G
Sbjct: 124 NLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + +L M R YT+ +F +V + P + + TDII GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
GE DE F ++V LI+ + +V++S++ PRPGT AA+ K++P +VK+RSR L +
Sbjct: 301 GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQI 360
Query: 414 -FEAFTPYLGMEGRVERIWITEIA---ADGIHLGYVQVLVPSTGNMLGTSALVKITSVGR 469
+E Y+G +VE + E D + + Y V++P GN G + +I +
Sbjct: 361 SYEINQKYIGK--KVEVLIHGEGKKGNVDAVTMNYKHVILP-FGNS-GEFRIAEIKNATS 416
Query: 470 WSVFGEVI 477
+ GEV+
Sbjct: 417 TYLLGEVM 424
>gi|14917063|sp|O59545.2|AMTAB_PYRHO RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 425
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 229/375 (61%), Gaps = 11/375 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N+C VK P++ + I +
Sbjct: 4 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 64 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 124 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFP
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
GE++E F ++V LIK + +V++S++ PRPGT AA+ K++P VVK+RSR L +
Sbjct: 301 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 360
Query: 414 -FEAFTPYLGMEGRV 427
+E Y+G + +V
Sbjct: 361 SYEINRKYIGKKVKV 375
>gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3]
gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 432
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 229/375 (61%), Gaps = 11/375 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N+C VK P++ + I +
Sbjct: 11 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 70
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 71 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 130
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 131 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 190
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 191 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 247
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFP
Sbjct: 248 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 307
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
GE++E F ++V LIK + +V++S++ PRPGT AA+ K++P VVK+RSR L +
Sbjct: 308 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 367
Query: 414 -FEAFTPYLGMEGRV 427
+E Y+G + +V
Sbjct: 368 SYEINRKYIGKKVKV 382
>gi|407462932|ref|YP_006774249.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046554|gb|AFS81307.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
Length = 422
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/424 (38%), Positives = 253/424 (59%), Gaps = 15/424 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++++GCS + +DSE ++G + G+ L ++SEE+D+ ++ TC+VK + + M I +
Sbjct: 4 IFVESYGCSASFADSEMISGLILNGGHTLVEDSEESDLNIVVTCSVKDATANKM---IHR 60
Query: 121 CKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
KS K KPLVVAGC+P+ ++ E E S++G + + ++V++ TL+G + L
Sbjct: 61 IKSLKTKPLVVAGCLPKAEKETVERFSENASLLGPNSLGKTLQVIDSTLQGRKEIALEDS 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 121 DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEIDEG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ E
Sbjct: 181 CKEIWLTSTDNGCYGLDIGTDLPALINA-VSEIPED--FMVRVGMMNPMYMPRIKEKLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ V+ FLH+PVQSGSD VL M R +T FR +V E P I+TDII GFP
Sbjct: 238 SYENDKVFKFLHIPVQSGSDKVLQDMKRGHTAGTFREIVKKAKERFPNFTISTDIIVGFP 297
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
ET EDF +TV L+ E + V++S++ RPGT AA +++ A VK RS+E+
Sbjct: 298 SETREDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKEIFEQINKI 357
Query: 418 T-----PYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSV 472
+ ++G +G V TE G + Y V VP + +G S V+I + S+
Sbjct: 358 SLDNNKKWIGWKGNVLFDEKTEDGIKGRNFAYKPVFVPEQVD-IGQSHTVEIIDATQNSL 416
Query: 473 FGEV 476
G++
Sbjct: 417 LGKI 420
>gi|402582010|gb|EJW75956.1| hypothetical protein WUBG_13135, partial [Wuchereria bancrofti]
Length = 240
Score = 285 bits (729), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 139/240 (57%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+A +W++N+CTVK+PS++ ++ + + + K ++VAGCV Q +L+ L+G+SIVGV+
Sbjct: 1 EDASLWILNSCTVKTPSETQLENTVKEARKLNKFIIVAGCVSQAEPNLQFLDGISIVGVK 60
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
QI+ V + VEETLKG+ VR L R+K + L LPK+R+NKF+EIL I+ GCL CTYCKTK
Sbjct: 61 QIECVTQAVEETLKGNCVRFLSRRKPNSNLLLPKIRKNKFIEILAISTGCLNHCTYCKTK 120
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
ARG+L SY ++SL+ R R ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P
Sbjct: 121 SARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIP 179
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
+G MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT DF
Sbjct: 180 EG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDF 238
>gi|212274679|ref|NP_001130719.1| uncharacterized protein LOC100191823 [Zea mays]
gi|194689936|gb|ACF79052.1| unknown [Zea mays]
Length = 308
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 165/315 (52%), Positives = 206/315 (65%), Gaps = 24/315 (7%)
Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
MNREYT+ +FR VVDTL ELVPGMQIATDIICGFPGETDEDF++TVNL+KEY+FPQVHIS
Sbjct: 1 MNREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHIS 60
Query: 383 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL 442
QFYPRPGTPAARMKKVPS VKKRSRELTSVFE+F+PY GMEG+VE+IWITEIA+DG+HL
Sbjct: 61 QFYPRPGTPAARMKKVPSNEVKKRSRELTSVFESFSPYQGMEGKVEKIWITEIASDGVHL 120
Query: 443 -----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK-ILNQVDDKIASN-----R 491
GY+QVLV + +MLGTSA KITSVGRWSVFG V++ + ++ I ++
Sbjct: 121 VGHTKGYIQVLVTAPDSMLGTSADAKITSVGRWSVFGVVVEGSVAVIEAPIQTSAELQEE 180
Query: 492 RISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQVSWIDRFAEDINS 551
+ +QV + C + S + ACSNE P CG + C L Q D
Sbjct: 181 HVQNQVEEAGCCATDSCG-ACACSNEAQP--CGPDRCGD--ALRAPQTCGGDVVT---TR 232
Query: 552 QNVIGWLLRKRK--NQLKGVENDVALGSKKKQEWMGGNMGEWGV-VDRALLGGMLVSFLI 608
Q + L +R KG ++ A + K+Q + GV +D L G+ SF +
Sbjct: 233 QEALQPTLVRRSVDGTTKGSDSTAAHSAGKEQRVE--VVTRRGVDIDTVLWCGLAASFAV 290
Query: 609 ILALLIHVGFRTLST 623
+ALL + + LST
Sbjct: 291 TVALLALLTSKILST 305
>gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1]
gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis
KOD1]
Length = 427
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 11/370 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++++GC+ N++D E M L GY L ++ E AD ++NTC VK P++ M I +
Sbjct: 4 VYVESYGCTRNKADGEIMEAILLRAGYELAESPESADYVVVNTCAVKDPTEHKMARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++ GC+ + D+ + ++GV+ IDR+ E ++ +G + V +
Sbjct: 64 LLDSGKKVIATGCLVHVNPDVIDPRVSGMLGVKSIDRIAEAIDLAERGGKLVSVEGWKER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
K+ L+LP++ ++ V ++PI+ GCL ACTYC T+ ARG L SY E ++ V+ +A G
Sbjct: 124 KVDKLELPRLWKSGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELVLKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRIRVGMMNPNHVIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
V + P VY FLH+PVQSG + VL M R YT+ +F +V +PG+ + TDII GFP
Sbjct: 241 VYQDPKVYKFLHLPVQSGDNEVLRRMGRNYTVEEFEEIVSEFRRKIPGLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR-----ELTS 412
GE +E F TV L+K + ++++S++ PRPGT AA+ K++P VK+RSR L
Sbjct: 301 GEGEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLPGWKVKERSRILHRLRLQI 360
Query: 413 VFEAFTPYLG 422
+E YLG
Sbjct: 361 AYEINQTYLG 370
>gi|407465270|ref|YP_006776152.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
gi|407048458|gb|AFS83210.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
Length = 422
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/426 (37%), Positives = 254/426 (59%), Gaps = 19/426 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ LTDNSEE+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLILNGGHTLTDNSEESDLNIVVTCSVKDSTANKMMYRINS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPL+VAGC+P+ ++ E E S++G + + ++V+ TL G + L
Sbjct: 64 LKS--KPLIVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVINTTLGGQKQVALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 122 LSKVGLPKVRLNPSVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQVQTEIKEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KEVWL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ +
Sbjct: 182 KEVWLTSTDNGCYGFDIGTDLPTLINA-VSEIPED--FMIRVGMMNPMYMPRIKEKLIDS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ V+ FLH+PVQSGSD VL+ M R +T +R +V + E I+TDII GFP
Sbjct: 239 YDNDKVFKFLHIPVQSGSDKVLNDMKRGHTSKTYREIVSKIKERFVDFTISTDIIIGFPS 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
ET+E+F +T++L+ E K V++S++ RPGT AA +++ +A VK+R++ +FE +
Sbjct: 299 ETEEEFQKTISLLDETKPDVVNLSKYSARPGTEAAEWEQIDAAEVKRRTK---IIFEQIS 355
Query: 419 --------PYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRW 470
++G +GRV +T+ G + Y + V LG S V+IT
Sbjct: 356 KLSMDSNQKWIGWKGRVLFDEMTDEGIKGRNFAYKPIAVEDDVE-LGQSHTVEITDATVK 414
Query: 471 SVFGEV 476
+ G++
Sbjct: 415 RLVGKI 420
>gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
Length = 424
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/427 (36%), Positives = 251/427 (58%), Gaps = 19/427 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + D + AD ++NTC VK P+++ M I +
Sbjct: 3 VHIETYGCTRNKADAEIMEALLVNAGYEIVD-LDSADYVIVNTCAVKDPTENHMRKRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
A K ++V GC+P + + + +I+GV+ I+R+ E +E +G ++ + ++ +
Sbjct: 62 LLDAGKKVIVTGCLPHINIEAIDERVSAILGVKSINRITEAIELAERGVKLVDVEQRGID 121
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
L+LP++ ++K V ++PI+ GCL ACTYC T+ ARG L SY+ E +V V+ +A G KE
Sbjct: 122 KLELPRMWKSKVVFVVPISEGCLNACTYCATRFARGILKSYSPEKIVRWVKEALAKGYKE 181
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ LSSEDTG YG DIG NL LL+ + + +G +R+GM NP +++ L E+ + +
Sbjct: 182 IQLSSEDTGCYGFDIGTNLAELLDELTS---IEGEFRIRVGMMNPNHVIKFLDELIDAYK 238
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
+Y FLH+PVQSG + +L M R YT+ DF T+V + P + + TDII GFPGE+
Sbjct: 239 DEKIYKFLHLPVQSGDNEILRKMGRTYTVEDFETIVKAFRKEFPELNLNTDIIVGFPGES 298
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV----KKRSRELTSV--- 413
+E F TV LIK K ++++S+F PRPGT AARM P +V K+RSR L +
Sbjct: 299 EEAFQNTVELIKRVKPDKINVSRFSPRPGTLAARM---PDQIVGWRAKERSRYLHRLRLA 355
Query: 414 --FEAFTPYLGMEGRV-ERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRW 470
+E Y+G E V + +G + Y ++++P +G VK+T
Sbjct: 356 ISYEINQKYVGRELLVLTHGEGKKGGVEGRTMNYKEIILPEAP--IGEFVKVKVTKATAT 413
Query: 471 SVFGEVI 477
+ GE+I
Sbjct: 414 YLMGELI 420
>gi|337284314|ref|YP_004623788.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
gi|334900248|gb|AEH24516.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
Length = 428
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 144/400 (36%), Positives = 235/400 (58%), Gaps = 12/400 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GC+ N++D E+MAG L G+ + D EEA+ ++NTC VK P++ M I +
Sbjct: 4 VHIENYGCARNRADGEFMAGILMLAGHEIVDTIEEAEYVVVNTCAVKDPTEVKMARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL---HRK 177
A K ++V GC+P + + + +++GV+ IDR+ +E +G ++ + ++
Sbjct: 64 LLDAGKKVIVTGCLPHVNPSVIDERASAVLGVKSIDRIAYAIETAERGEKIISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L L LP++ + ++PI GCL ACTYC T+ ARG L SY E +V V+ I G
Sbjct: 124 NLDKLTLPRLPTSGISFVVPIAEGCLNACTYCATRLARGVLKSYRPELIVNWVKWAIERG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+WLS+EDTG YG DIG NL LL+ I A DG +R+GM NP +++ L E+ E
Sbjct: 184 YREIWLSAEDTGCYGFDIGTNLAELLDEITA---IDGEFRIRVGMMNPNHVIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + +L M R YT+ +F +V P + + TD+I GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVAEFRRAFPDLNLHTDVIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
GE +E F +TV LI+ + +V++S++ PRPGT AA+ K++P ++K+RSR L +
Sbjct: 301 GEDEEAFQRTVALIERIRPDKVNVSRYSPRPGTVAAKWKQLPGWIIKERSRLLHHLRLRI 360
Query: 418 TPYLGMEGRVERIWI------TEIAADGIHLGYVQVLVPS 451
+ + ME +R+ + + D + + Y +++PS
Sbjct: 361 SYEINMEYIGKRLKVLVHGPGKKGNIDAVTMNYKHIILPS 400
>gi|393795212|ref|ZP_10378576.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 422
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 160/425 (37%), Positives = 249/425 (58%), Gaps = 17/425 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ + NS E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
KS KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALED 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +V T ++D
Sbjct: 120 TDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSD 179
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++ E+
Sbjct: 180 GCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELI 236
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E VY FLH+PVQSGSD VL+ M R +T++ F+ VV E I+TDII GF
Sbjct: 237 ESFSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERYTDFTISTDIIVGF 296
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR----ELTS 412
P ET EDF +TV L+ E V++S++ RPGT AA +++ ++ VK+RSR ++
Sbjct: 297 PSETREDFEKTVELLNETSPDIVNLSKYSARPGTEAAEWEQIEASEVKRRSRIIFNQINK 356
Query: 413 V-FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWS 471
+ E ++G +G+V T+ G + Y V V +G + VKIT S
Sbjct: 357 ISLENNQKWIGWKGKVLFDEKTDQGIKGRNFAYKSVFVKDEIK-IGQTQTVKITDASIHS 415
Query: 472 VFGEV 476
+ GE+
Sbjct: 416 IIGEI 420
>gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 284
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/285 (48%), Positives = 193/285 (67%), Gaps = 12/285 (4%)
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPIL 262
G CTYC TK ARG+L SY ++ +V R++ V D +KE+WL+SED+GAYG D+ N+ L
Sbjct: 1 GNCTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGAYGIDLNTNIVNL 60
Query: 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
L I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +Y F+H+PVQSGS+ VL
Sbjct: 61 LKEIL-DYVQDTDIMIRIGMTNPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKD 119
Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
MNREY + DF +VD L + VP M IATDIICGFP E++ D +TVNL+K YKFP ++IS
Sbjct: 120 MNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLVKTYKFPILNIS 179
Query: 383 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGMEGRVERIWITEIAADGIH 441
QFYPR GT A MKK+ + +VKKRSRE+T F ++ Y ++ ++++ TEI++ H
Sbjct: 180 QFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYEFLQDTIQKVLFTEISSKSEH 239
Query: 442 L-----GYVQVLV----PSTGNMLGTSALVKITSVGRWSVFGEVI 477
+ YV+VL+ N+LG A KI S +W VF E++
Sbjct: 240 IIGHTKQYVKVLLHNNNSENENLLGKFATCKIVSTHKWHVFAELV 284
>gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
Length = 429
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 217/348 (62%), Gaps = 6/348 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + + +E++I ++N+C VK P++ + I +
Sbjct: 8 VYIENYGCARNRADGEIMAALLHLAGHEIVYDLDESEIVIVNSCAVKDPTERKIARRIRE 67
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + ++ + +++GV+ IDR+V+ VE ++G + V ++
Sbjct: 68 LLDEGKKVIVTGCLPHVNPEVIDERVSAVLGVKSIDRIVQAVEYAIRGEKLISVPDWRKR 127
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LDLP++ I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G
Sbjct: 128 NLDKLDLPRLSLRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVEWVKWAIKQG 187
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E
Sbjct: 188 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVIKFLDELIE 244
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F +V+ + P + + TDII GFP
Sbjct: 245 AYQDDKVYKFLHLPVQSGDNEILRRMGRNYTVEEFEEIVNAFRKKFPDLNLHTDIIVGFP 304
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
GE++E F ++V LIK K +V++S++ PRPGT AA+ K++P ++K+
Sbjct: 305 GESEEAFQKSVELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWLIKE 352
>gi|341582604|ref|YP_004763096.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
gi|340810262|gb|AEK73419.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
Length = 425
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 212/353 (60%), Gaps = 6/353 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L + GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADAEMMEAILVSAGYGLAETPETADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
A + ++V GC+P + D + I+GV+ IDR+ E + +G + V +
Sbjct: 64 LLDAGRKVIVTGCLPHVNPDAIDSRVSGILGVKSIDRIAEAISLAERGGKLVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 NIDKLELPRLWKGGVAFVVPISEGCLNACTYCATRFARGVLRSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L L E+ +
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLRFLDELVD 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
VY F+H+PVQSG D VL M R YT+ F +V T + V + + TDII GFP
Sbjct: 241 AYTDEKVYRFIHLPVQSGDDEVLKRMGRTYTVEQFEEIVRTFRKKVRDLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
GETDE F TV L++ + ++++S++ PRPGT AA+ K++P K+RSREL
Sbjct: 301 GETDEAFRNTVGLVERVRPDKINVSRYSPRPGTIAAKWKQIPGWKAKERSREL 353
>gi|409096282|ref|ZP_11216306.1| 2-methylthioadenine synthetase [Thermococcus zilligii AN1]
Length = 424
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 215/370 (58%), Gaps = 11/370 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D E M L GY L + E+AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADGEIMEAILVRAGYELAETPEDADYVVVNTCAVKDPTEKHMKERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + + I+GV+ IDR+ E VE +G + V +
Sbjct: 64 LLDSGKRVIVTGCLPHVNPSTIDPRVSGILGVKSIDRIAEAVERAERGEKFVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L+LP++ ++ ++PI GCL ACTYC T ARG L SY E +V V+ + G
Sbjct: 124 NSDKLELPRLWKSGVAFVVPIGEGCLNACTYCSTHFARGVLKSYRPELIVKWVKEALIRG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL I A +G +R+GM NP ++ L E+ +
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLEEITA---IEGDFRVRVGMMNPNHVIRILDELID 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + VL M R YT+ +F +V VPG+ + TDII GFP
Sbjct: 241 AYQSGKVYKFLHLPVQSGDNGVLRRMGRNYTVEEFEEIVGEFRRKVPGLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
GETDE F T+ L+K K ++++S++ PRPGT AA+ K++P VK+RSR L +
Sbjct: 301 GETDEAFENTLELVKRVKPDKINVSRYSPRPGTIAAKWKQLPGWKVKERSRVLHRLRLGI 360
Query: 414 -FEAFTPYLG 422
+E YLG
Sbjct: 361 AYEINQSYLG 370
>gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
Length = 422
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 160/424 (37%), Positives = 250/424 (58%), Gaps = 15/424 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++++GCS + +DSE ++G + G+ L ++S E+D+ ++ TC+VK + + M + +
Sbjct: 4 IFVESYGCSASFADSEMISGLILNGGHTLVEDSSESDLNVVVTCSVKDATANKM---VHR 60
Query: 121 CKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
KS K KPLVVAGC+P+ ++ E E S++G + + ++V++ TLKG + L
Sbjct: 61 IKSLKTKPLVVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVIDSTLKGRKKIALEDT 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 121 DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEINEG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KEVWL+S D G YG DIG +LP L+NA V+E+P + M+R+GM NP ++ +++ E
Sbjct: 181 CKEVWLTSTDNGCYGFDIGTDLPSLINA-VSEIPEE--FMIRVGMMNPMYMPRIKEKLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ V+ FLH+PVQSGSD VL M R +T FR +V E P I+TDII GFP
Sbjct: 238 SYDNDKVFKFLHIPVQSGSDKVLHDMKRGHTAGTFREIVKKARERFPDFTISTDIIVGFP 297
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ET EDF +TV L+ E + V++S++ RPGT AA +++ A VK RS+ +
Sbjct: 298 SETKEDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKRIFEQINKI 357
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSV 472
E ++G +G V T+ G + Y V VP + +G V+I + S+
Sbjct: 358 SLENNKKWIGWKGDVLFDEQTDEGIKGRNFAYKPVFVPEQVD-IGQLHAVEIIDATQNSL 416
Query: 473 FGEV 476
G++
Sbjct: 417 LGKI 420
>gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 422
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 158/425 (37%), Positives = 247/425 (58%), Gaps = 17/425 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ + NS E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
KS KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALED 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +V T +++
Sbjct: 120 TDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSE 179
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++ E+
Sbjct: 180 GCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELI 236
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E VY FLH+PVQSGSD VL+ M R +T++ F+ VV E I+TDII GF
Sbjct: 237 ESFSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERFADFTISTDIIVGF 296
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P ET EDF +T L+ E V++S++ RPGT AA +++ ++ VK+RSR + +
Sbjct: 297 PSETREDFEKTFELLNETSPDIVNLSKYSARPGTEAAEWEQIEASEVKRRSRIIFNQINK 356
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWS 471
E ++G +G+V T+ G + Y V V +G + VKIT S
Sbjct: 357 ISLENNQKWIGWKGKVLFDEKTDQGIKGRNFAYKSVFVKDEIK-IGQTQTVKITDASIHS 415
Query: 472 VFGEV 476
+ GE+
Sbjct: 416 IIGEI 420
>gi|392354304|ref|XP_003751735.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
Length = 423
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/247 (53%), Positives = 180/247 (72%), Gaps = 7/247 (2%)
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+
Sbjct: 61 EGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEM 118
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICG
Sbjct: 119 AKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICG 178
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+++L+ VF
Sbjct: 179 FPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDLSRVFH 238
Query: 416 AFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRW 470
++ PY G +++ +TE + D Y QVLVP +G V I G+
Sbjct: 239 SYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESGKH 298
Query: 471 SVFGEVI 477
+ G+ +
Sbjct: 299 FLKGQPV 305
>gi|223478016|ref|YP_002582106.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
gi|214033242|gb|EEB74070.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
Length = 424
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 223/370 (60%), Gaps = 11/370 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++++GCS N++D E M L G+ L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVESYGCSRNKADGEIMEALLLKAGHELVETPENADYVVVNTCAVKDPTEFKMAKRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 178
+ K ++ GC+ + D + I+GV+ IDR+ E +E +G ++ + R++
Sbjct: 64 LLDSGKKVIATGCLVHVNPDAIDPRVSGILGVKSIDRIAEAIEIAERGGKLVSVEGWRER 123
Query: 179 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 NPDKLELPRLWKPGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F+ +V + +P + + TDII GFP
Sbjct: 241 AYQDEKVYRFLHLPVQSGDNEILRRMGRNYTVEEFKEIVRAFRKKIPELNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
GET+E F TV L+K K ++++S++ RPGT AAR K++P +VK+RSREL +
Sbjct: 301 GETEEAFRNTVELVKRIKPDKINVSRYSARPGTIAARWKQLPGWLVKERSRELHRLRLQI 360
Query: 414 -FEAFTPYLG 422
+E Y+G
Sbjct: 361 AYEINKAYVG 370
>gi|386876686|ref|ZP_10118774.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
gi|386805442|gb|EIJ64973.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
Length = 422
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/424 (36%), Positives = 248/424 (58%), Gaps = 13/424 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G++L DNS ++D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIQNGGHSLVDNSSDSDLNIVVTCSVKDSTANKMMHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPL+VAGC+P+ +D E + S++G + + ++V+ TL G L
Sbjct: 64 LKS--KPLIVAGCLPKAEKDTVEKFSKKASLLGPNSLGKTLQVINTTLDGRRQIALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +++T I +G
Sbjct: 122 LSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQIQTEIKEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG DIG +LP L+NA+V E+P + M+R+GM NP ++ + + E
Sbjct: 182 KEIWLTSTDNGCYGFDIGTDLPSLVNAVV-EIPEN--FMVRVGMMNPMYMPRIKERLIES 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ V+ FLH+PVQ GS+ VL M R +T FR +V + I+TDII GFP
Sbjct: 239 FDNDKVFKFLHIPVQCGSNKVLHDMKRGHTEGTFREIVKKARDRFEQFTISTDIIVGFPS 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
ET+EDF +T+ L+ E K V++S++ RPGT AA K++ + +K+RS+ +
Sbjct: 299 ETEEDFQKTIALLDETKPDVVNLSKYSARPGTDAAEWKQLDATEIKRRSKVIFEQISKLS 358
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 473
E+ ++G +G+V +T+ G + Y + V +M G S V+IT V +
Sbjct: 359 IESNKKWIGWKGKVLFDEMTDEGIKGRNYAYKPIAVEDKVSM-GESHTVEITDVTVKRLI 417
Query: 474 GEVI 477
G+++
Sbjct: 418 GKIV 421
>gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
Length = 424
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 223/370 (60%), Gaps = 11/370 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++++GCS N++D E M L GY L + ++AD ++NTC VK P++ M I +
Sbjct: 4 VYVESYGCSRNRADGEIMEAILLRAGYELAEGPDKADYVVVNTCAVKDPTELKMVRRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 178
+ K ++ GC+ + + + I+GV+ IDR+ E + +G ++ + R++
Sbjct: 64 LLDSGKKVIATGCLVHVNPEAIDPRVSGILGVKSIDRIAEAISVAERGEKLISVEGWRER 123
Query: 179 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E ++ VR ++ G
Sbjct: 124 NPDKLELPRLWKPGVSFVVPISEGCLNACTYCATRFARGVLKSYKPELVIKWVREAVSRG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + +L M R YT+ +F +V+ + +P + + TDII GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRKKIPDLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 413
GE+DE F TV L+K K ++++S++ RPGT AAR K++P +VK+RSREL +
Sbjct: 301 GESDEAFRNTVELVKRVKPDKINVSRYSARPGTIAARWKQLPGWLVKERSRELHRLRLAI 360
Query: 414 -FEAFTPYLG 422
+E Y+G
Sbjct: 361 AYEINRAYVG 370
>gi|375082214|ref|ZP_09729282.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
gi|374743102|gb|EHR79472.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
Length = 422
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 245/428 (57%), Gaps = 20/428 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + + + A+ ++NTC VK P++ M I +
Sbjct: 3 VHIETYGCTRNKADAEIMEALLLKAGYEIAE-LDSAEYVVVNTCAVKDPTEKHMSKRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + D + I+GV+ IDR+VE ++ KG + V +
Sbjct: 62 LIDSGKRVIVTGCLPHVNPDAIDERASGILGVKSIDRIVEAIQLAEKGEKLISVEGWKER 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ + V ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 122 SIDKLELPRIWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELIVKWVKEALAKG 181
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNNAIKILDELVE 238
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
V + +Y FLH+PVQSG + +L M R YT+ +F +V + + + + TDII GFP
Sbjct: 239 VYKDEKIYKFLHLPVQSGDNEILRKMGRTYTVEEFEEIVKEFRKHIKDLNLNTDIIVGFP 298
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV--- 413
GE++E F TV L+K K ++++S+F PRPGT AA+M+ ++ VK+RSR L +
Sbjct: 299 GESEEAFQNTVELVKRIKPDKINVSRFSPRPGTLAAKMEGQIVGWKVKERSRYLHRLRLS 358
Query: 414 --FEAFTPYLGMEGRVERIWITEIAADGIH---LGYVQVLVPSTGNMLGTSALVKITSVG 468
+E Y+G E VE + + GI + Y +++P +G VK+T
Sbjct: 359 ISYEINKRYIGRE--VEVLTHSPGEKGGIEGRTMNYKDIILPDAP--IGEFVRVKVTKAT 414
Query: 469 RWSVFGEV 476
+ G++
Sbjct: 415 STYLMGKL 422
>gi|390961316|ref|YP_006425150.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
gi|390519624|gb|AFL95356.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
Length = 424
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 206/348 (59%), Gaps = 6/348 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADAEMMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++ GC+ + + I+GV+ IDR+ E + +G + V +
Sbjct: 64 LLDSGKKVIATGCLVHVNPGAIDPRVSGILGVKSIDRIAEAISVAERGGKLISVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ +N ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 SIDKLELPRLWKNGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVRWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNHAIKFLDELVE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
R VY FLH+PVQSG D VL M R YT+ +F +V T +P + + TDII GFP
Sbjct: 241 AYRDEKVYKFLHLPVQSGDDEVLRRMGRTYTVEEFEEIVRTFRRRIPHLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
GET+E F T L+K + ++++S++ PRPGT AAR K++P VK+
Sbjct: 301 GETEEAFQNTAELVKRVRPDKINVSRYSPRPGTVAARWKQLPGWKVKE 348
>gi|212224708|ref|YP_002307944.1| 2-methylthioadenine synthetase [Thermococcus onnurineus NA1]
gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
onnurineus NA1]
Length = 425
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 209/348 (60%), Gaps = 6/348 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNKADAEIMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV---EETLKGHEVRLLHRK 177
+ K ++V GC+ + D+ + I+GV+ IDR+ E + E K V +
Sbjct: 64 LLDSGKRVIVTGCLTHVNPDIIDPRVSGILGVKSIDRIAEAIDLAERDGKLVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L L LP++ R+ ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 SLDKLGLPRLWRSGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++ L E+ E
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITS---IEGEFRIRVGMMNPNHAIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + VL M R YT+ +F +V+ +PG+ + TDII GFP
Sbjct: 241 AYQDEKVYKFLHLPVQSGDNEVLRRMGRTYTVEEFEEIVNEFRRKIPGLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
GET+E F TV L+K + ++++S++ PRPGT AA+ K++P VK+
Sbjct: 301 GETEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLPGWKVKE 348
>gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis]
gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis]
Length = 202
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/202 (61%), Positives = 155/202 (76%), Gaps = 2/202 (0%)
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
CL CTYCKTKHARG LGSY E +V R + +GV E+WL+SEDTGAYG+DIGV LP
Sbjct: 1 CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPE 60
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LL +V +P G +RIGMTNPP+ILEHL+E+A++L HP VYSFLHVPVQS S VL+
Sbjct: 61 LLWQLVKVIPEGGR--MRIGMTNPPYILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLA 118
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
M REY DF VV+ L + VP + IATD+ICGFP ET++DF +T++L+K+YKFP + I
Sbjct: 119 DMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKFPSLFI 178
Query: 382 SQFYPRPGTPAARMKKVPSAVV 403
+QFYPRPGTPAARMK++P+ V
Sbjct: 179 NQFYPRPGTPAARMKRLPTEEV 200
>gi|340345320|ref|ZP_08668452.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520461|gb|EGP94184.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 422
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/424 (36%), Positives = 244/424 (57%), Gaps = 13/424 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ L +S E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTLVKDSSESDLNIVVTCSVKDSTANKMMHRINS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPLVVAGC+P+ ++ E + S++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKAEQNTVEKITQKASLLGPNSLGKTLQVIDSTLRGIKQVALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N + I+ I GC+ CT+C+TK ++G L SY + +V +V T I++G
Sbjct: 122 LSKVGLPKVRLNPVIGIIEIASGCMSECTFCQTKLSKGDLKSYRLGDIVRQVETEISEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG DI +LP L+NA V E+P D M+R+GM NP ++ E+ +
Sbjct: 182 KEIWLTSTDNGCYGLDINTDLPTLINA-VTEIPED--FMIRVGMMNPMYMPRIKNELIKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
VY FLH+PVQSGS+ VL+ M R +T++ + VV E I+TDII GFP
Sbjct: 239 FDSDKVYKFLHIPVQSGSNKVLNDMKRGHTVNTVKEVVKKAKERFENFTISTDIIVGFPS 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR----ELTSV- 413
ET+EDF +T LI E + V++S++ RPGT AA ++ ++ VK+RSR ++ +
Sbjct: 299 ETNEDFEKTFKLINEIRPDIVNLSKYSARPGTEAAEWDQIEASEVKRRSRIIFNQINKIS 358
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 473
E ++G G+V T G + Y V V +G + V+I S+
Sbjct: 359 LENNQKWIGWRGKVLFDEETSEGIKGRNEAYKSVFVKDKIK-IGQTHTVEIIDATTHSIL 417
Query: 474 GEVI 477
G+++
Sbjct: 418 GKIV 421
>gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7]
gi|15621515|dbj|BAB65510.1| tRNA methylthiotransferase [Sulfolobus tokodaii str. 7]
Length = 418
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 240/426 (56%), Gaps = 18/426 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ DS M L G+ + D+ +AD+ ++NTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQRIKE 62
Query: 121 CKSAKKPLVVAGCV--PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K K L++AGC+ Q + + SIVG Q ID++VE VE +G + L K+
Sbjct: 63 LKKIGKKLIIAGCLVSSQPALVMSLAPESSIVGAQSIDKIVEAVESNKRG--IFLEESKE 120
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L P++ K + I+PI GC G C +C TK AR L SY ++V V+ + G
Sbjct: 121 LVT---PRIFEGK-ISIIPIADGCAGDCNFCITKLARKKLRSYPPRNIVNAVKEAVQKGA 176
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+++DT AYG DI NL LL I L +G+ M+RIGM P + + EI E+
Sbjct: 177 VEIELTAQDTAAYGLDINYNLVELLKEI---LEIEGNYMIRIGMMTPELAFKQIDEILEI 233
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
++ VY FLH+PVQSG D VL MNR+YT+ ++R +V + + +P + I TDII G PG
Sbjct: 234 IKDKRVYKFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKEIRDKIPIVNITTDIIIGHPG 293
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--A 416
E DE F T+NLIKE KF ++H++ + RP T +A M +VP ++ K+R + V+E A
Sbjct: 294 EDDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASMPQVPDSIKKERMKIANEVYEEVA 353
Query: 417 FTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVGRWSV 472
++ + G + TE+ G +G Y+ V++ + LG VKIT + +
Sbjct: 354 YSVHSEYLGSNALVLTTELGRKGSIIGRTINYIPVVIKDY-DKLGEWINVKITEASFFDL 412
Query: 473 FGEVIK 478
G+ I+
Sbjct: 413 RGKFIQ 418
>gi|389851459|ref|YP_006353693.1| methylthiotransferase [Pyrococcus sp. ST04]
gi|388248765|gb|AFK21618.1| putative methylthiotransferase [Pyrococcus sp. ST04]
Length = 405
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 233/416 (56%), Gaps = 28/416 (6%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MA L G+ L + +A++ ++N+C VK P++ + I + K ++V GC+P
Sbjct: 1 MAALLYLAGHELVSDENDAEVVVVNSCAVKDPTERKIARRIKELLDEGKKVIVTGCLPHV 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPALDLPKVRRNKFVE 194
+ D+ + +I+GV+ IDR+V+ VE L+G + V ++ L LDLP++
Sbjct: 61 NPDVIDERVSAILGVKSIDRIVQAVEYALRGEKLISVPDWKKRNLDKLDLPRLSPRGVHF 120
Query: 195 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G KE+WLS+EDTG YG D
Sbjct: 121 IVPIAEGCLNACTYCATRLARGVLKSYSPEKVVEWVKWAIRQGYKEIWLSAEDTGCYGFD 180
Query: 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314
IG NL LL+ I + +G +R+GM NP +++ L E+ E + +Y FLH+PVQS
Sbjct: 181 IGTNLAKLLDEITS---IEGEFRVRVGMMNPNHVMKFLDELIEAYKDEKIYKFLHLPVQS 237
Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
G + +L M R YT+ +F +V+ P + + TDII GFPGE++E F ++V LIK
Sbjct: 238 GDNEILRKMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFPGESEEAFQKSVELIKRI 297
Query: 375 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAFTPYLGM------ 423
+ +V++S++ PRPGT AA+ K++P +VK+RSR + + +E Y+G
Sbjct: 298 RPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRIMHRIRLQISYEINQRYIGKKVDVLV 357
Query: 424 --EGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
EG+ I D + + Y +++P G A K+ + GE++
Sbjct: 358 HGEGKKGNI-------DAVTMNYKHIILPHGEK--GEFATAKVKGATSTYLLGEIV 404
>gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM
2088]
gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM
2088]
Length = 427
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/430 (35%), Positives = 249/430 (57%), Gaps = 27/430 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC++N++DS+ +AG L + D+ +EAD+ ++NTC VK P++ + I +
Sbjct: 3 VYIETYGCTYNKADSQIIAGILEKENIKVVDSIDEADVIILNTCYVKQPTEHKIINRIRE 62
Query: 121 CKSA--KKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
++ K L+VAGC+ + LK++ S +G ++ + EVV+ + G++ ++ +
Sbjct: 63 LQNTYKSKELIVAGCMVEIDPEKLKKIAPESAWLGPHKLHKAPEVVKSVINGNKKKVYGK 122
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+++PK R N + I+ I GCLG C+YC T+ ARG L SY ++S+V V+ I D
Sbjct: 123 DSKIKVEMPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRLYSYPLDSIVKDVKKAIED 182
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+++DT AYGRDIG +LP L+N I + DG +R+GM +P + + L E+
Sbjct: 183 GCVEIQLTAQDTAAYGRDIGCDLPTLINKITS---LDGKFKIRVGMMHPKNVKKILDELV 239
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+ +Y FLH+PVQSGSD VL MNR Y + DF+ +V + +P + IATDII GF
Sbjct: 240 DAYDSEKIYKFLHLPVQSGSDKVLRDMNRGYKVKDFKKIVRKFRKKIPEISIATDIIVGF 299
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV--- 413
P E+ EDF +T L+ E K +H S++ RPG ++++ ++ VK+RSR + +
Sbjct: 300 PTESREDFKKTCELLNEIKPNFIHSSRYAHRPGAKSSKLDELDHNEVKERSRIIEEIKNK 359
Query: 414 --FEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPS--TGNML------GTS 459
E +G E +++ I E G ++G Y+ V+V S G ++ TS
Sbjct: 360 IMREENKKLVGTE---QKVLIVEKGKKGGYIGRTSSYIPVIVNSGKPGEIIKVKIKEATS 416
Query: 460 ALVKITSVGR 469
+K +VGR
Sbjct: 417 TYLKGDAVGR 426
>gi|408383124|ref|ZP_11180663.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
gi|407814232|gb|EKF84864.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
Length = 424
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/417 (37%), Positives = 240/417 (57%), Gaps = 19/417 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYM+TFGC+ NQ+DS+ +AG L G + + EEAD+ ++NTC VK P++ + I K
Sbjct: 3 IYMETFGCTFNQADSQIIAGLLEENGGKIVKSPEEADVIIMNTCYVKQPTEQKITNRIGK 62
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
++ +K L++AGC+ D ++LE ++ +G ++I+ EVVE +KGH VR
Sbjct: 63 LQAQFPQKKLLIAGCMV--DIDPEKLEKMAPQAGWIGARRINSAPEVVEAVMKGHLVRET 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
LP+ R N +V IL I GCLG C+YC T+ ARG L SY + L +
Sbjct: 121 GHGDEFKTCLPRKRSNPWVHILQICEGCLGKCSYCCTRFARGGLQSYPISLLKSEAEQAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
ADG E+ L+++DT AYG+D G L L+N I + G +R+GM +P I L+
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDSGETLADLINEISS---IKGDFRIRVGMMHPKNIANDLES 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I ++ VY FLH+P+QSGSD +L MNR++++ ++ +V +P + +ATDII
Sbjct: 238 IITAFKNDKVYKFLHLPLQSGSDQILEDMNRDHSVEEYLEIVKHFQTEIPELSLATDIIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 412
G+P E ++DF T+N+I+E + +HIS+++ RPGT ++ + ++ +KKRSR L
Sbjct: 298 GYPTEGEDDFEGTMNVIREIRPDFLHISKYHHRPGTSSSLLPEIDHQTMKKRSRNLNDLK 357
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKIT 465
V A + G ++I IT+ + G +LG Y V+V +LGT V IT
Sbjct: 358 VEIATVNNKKLLGTHQKILITDKGSKGGYLGRTSSYKTVVVEEA--ILGTFLDVNIT 412
>gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine
crenarchaeote HF4000_ANIW97M7]
Length = 422
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/423 (35%), Positives = 241/423 (56%), Gaps = 13/423 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ L + E+D+ LI TC+VK + + M I +
Sbjct: 4 IWVEAYGCSSSFADSEMISGLIVNGGHTLVQDQSESDLNLIVTCSVKDVTATRMVHRIKQ 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+S KPLVVAGC+P+ R E + S++G I + ++V+E TL G +V L
Sbjct: 64 SQS--KPLVVAGCLPKAERHTVEKFAQNASMMGPNSIGKTLQVIEATLNGSKVVALDDTD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + +PK+R N V I+ I GC+ CT+C+TK A+G L SY + +V +V+ +ADG
Sbjct: 122 LSKVGIPKIRLNPAVGIVEIANGCMSECTFCQTKLAKGDLNSYRIGDIVRQVKRELADGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WLSS D G YG DIG +L L+ V+++P D +R+GM NP F+ + +
Sbjct: 182 KEIWLSSTDNGCYGLDIGEDLSSLIEQ-VSQIPEDFK--IRVGMMNPMFMPRIRDNLLKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ V+ FLHVPVQSGS+ VL+ M R +T+ F+ VV I+TDII G+P
Sbjct: 239 FENNKVFRFLHVPVQSGSNDVLNNMKRGHTVETFKDVVRKFRTKFGPFTISTDIIIGYPT 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV----- 413
ET E+F +T+ L+KE + V++S++ RPGT AA M ++ A VK+RS+++T +
Sbjct: 299 ETQENFEETIALLKETRPDIVNLSRYSQRPGTVAAEMPQIDVAEVKRRSKQVTELNNNIS 358
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 473
E ++G +G V + G + Y + V +G + V++ S+
Sbjct: 359 LENNRKWIGWKGNVLFDENLDGQVKGRNFAYKPIFVNEITE-IGQTCTVRVVGATNHSLI 417
Query: 474 GEV 476
GE+
Sbjct: 418 GEI 420
>gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
Length = 422
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 228/379 (60%), Gaps = 10/379 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ NQ+DS+ M G LS YA D++EEAD+ ++NTC V ++ + I +
Sbjct: 3 VYIETYGCTMNQADSDIMRGLLSR-EYAFADSAEEADVVIVNTCGVIGFTERKILRRIEE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K K ++ AGC+ + +R ++ ++V + R+ E V+ L G V +++ ++
Sbjct: 62 IKGMGKKVIAAGCLARIARKRLKIAD-ALVSPDNVHRINEAVKAVLNGERVEIINVSRVD 120
Query: 181 ALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
++ V+ + + I+ I+ GCLG C+YC TK ARG L S+++E +V V+ V+ G
Sbjct: 121 KAEISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRSFSIEKIVEEVKKVVEMG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ L+S+DTGAYG+D G LP LL I +E+ +G +R+GM NP +E L ++ E
Sbjct: 181 YKEIQLTSQDTGAYGKDKGYRLPDLLEKI-SEI--EGDFRVRVGMMNPQHAMEILDDLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + VL M R +T+ DF VV + + ++TD+I GFP
Sbjct: 238 AFKSEKIYKFLHLPVQSGDNKVLMDMRRGHTVEDFEEVVSAFRKAFDDVLLSTDVIVGFP 297
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE-- 415
E++E F +TV LIK K V+I++F PR GT AA++K +P + K+RSR+LT + E
Sbjct: 298 TESEESFEKTVELIKRVKPDIVNITRFSPREGTLAAKLKDIPDWIKKERSRKLTKICEEI 357
Query: 416 AFTPYLGMEGRVERIWITE 434
L G+ R+ +T+
Sbjct: 358 GLENNLKFVGKKLRVLVTK 376
>gi|385772200|ref|YP_005644766.1| MiaB family RNA modification protein [Sulfolobus islandicus
HVE10/4]
gi|385774915|ref|YP_005647483.1| MiaB family RNA modification protein [Sulfolobus islandicus REY15A]
gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A]
gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
HVE10/4]
Length = 421
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 238/424 (56%), Gaps = 15/424 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+++V++ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R +
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + +
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
EV+R+P VY F+H+PVQSG D VL MNR+YT+ +++ +V + +P I TDII G
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTDIIIGH 294
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 415
PGE ++ FN T+ L+KE +F ++H++ + RP T +A M +VP +V KKR + ++E
Sbjct: 295 PGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIANKLYED 354
Query: 416 -AFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVGRW 470
A + +L G R+ TE+ G +G Y+ V++ S LG VKIT +
Sbjct: 355 IALSIHLEYVGSTSRVITTELGRKGSVVGRLMNYIPVVIKSENVELGKWYNVKITEASFY 414
Query: 471 SVFG 474
+ G
Sbjct: 415 DLRG 418
>gi|227826584|ref|YP_002828363.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.14.25]
gi|227829226|ref|YP_002831005.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.S.2.15]
gi|229577995|ref|YP_002836393.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.G.57.14]
gi|229583207|ref|YP_002841606.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.N.15.51]
gi|229583748|ref|YP_002842249.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.16.27]
gi|238618670|ref|YP_002913495.1| MiaB family RNA modification protein [Sulfolobus islandicus M.16.4]
gi|284996581|ref|YP_003418348.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.D.8.5]
gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.S.2.15]
gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.14.25]
gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.G.57.14]
gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.N.15.51]
gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.16.27]
gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.D.8.5]
Length = 421
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 238/424 (56%), Gaps = 15/424 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+++V++ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R +
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + +
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
EV+R+P VY F+H+PVQSG D VL MNR+YT+ +++ +V + +P I TDII G
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTDIIIGH 294
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 415
PGE ++ FN T+ L+KE +F ++H++ + RP T +A M +VP +V KKR + ++E
Sbjct: 295 PGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIANKLYED 354
Query: 416 -AFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVGRW 470
A + +L G R+ TE+ G +G Y+ V++ S LG VKIT +
Sbjct: 355 IALSIHLEYVGSTSRVITTELGRKGSVVGRLMNYIPVVIRSENVELGKWYNVKITEASFY 414
Query: 471 SVFG 474
+ G
Sbjct: 415 DLRG 418
>gi|242399008|ref|YP_002994432.1| 2-methylthioadenine synthetase [Thermococcus sibiricus MM 739]
gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
739]
Length = 424
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 153/427 (35%), Positives = 240/427 (56%), Gaps = 16/427 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + D + AD ++NTC VK P++ M I +
Sbjct: 3 VHIETYGCTRNKADAEMMEALLLRAGYEVVD-LDSADYVIMNTCAVKDPTEKHMARRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + + I+GV+ IDR++ +E +G + V +
Sbjct: 62 LLDSGKRVIVTGCLPHVNPSAIDERVSGILGVKSIDRIIGAIELAERGEKLINVEGWRER 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L++P+V + V ++PI+ GCL ACTYC T+ ARG L SY +V V+ +A G
Sbjct: 122 SIDKLEIPRVWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPGLIVKWVKEAVAKG 181
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLARLLDEITS---IEGEFRIRVGMMNPNNAVKVLDELIE 238
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + +L M R YT+ +F +V + + + + TDII GFP
Sbjct: 239 AYKDNKIYKFLHLPVQSGDNEILKRMGRPYTVEEFEEIVREFRKHIKDLNLNTDIIVGFP 298
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV--- 413
GE++E F TV LIK + ++++S+F PRPGT AARMK ++ VK+RSR L +
Sbjct: 299 GESEEAFQNTVELIKRVRPDKINVSRFSPRPGTVAARMKDQIVGWRVKERSRYLHRLRLS 358
Query: 414 --FEAFTPYLGMEGRV-ERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRW 470
+E YLG E V + +G + Y +++P +G VK+T
Sbjct: 359 ISYEINRRYLGREMEVLTHGEGKKGGIEGRTMNYKDIILPEAP--VGEFVKVKVTKTTST 416
Query: 471 SVFGEVI 477
+ GE++
Sbjct: 417 YLLGELV 423
>gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2]
gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2]
gi|384432728|ref|YP_005642086.1| MiaB family RNA modification protein [Sulfolobus solfataricus 98/2]
gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2]
Length = 421
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/426 (34%), Positives = 242/426 (56%), Gaps = 19/426 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ IY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+V++V+ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIVDIVKS-----EERKIVI 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R I
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAIQS 175
Query: 237 GVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G +E+ L+ +DT AYG D+G ++L ++N VA++ DG M+RIGM P + + +
Sbjct: 176 GAREIELTGQDTAAYGLDLGGSISLVDVVNK-VADI--DGDFMIRIGMMTPEQAMRIMDD 232
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E +R+P VY F+H+PVQSG D VL MNR+YT+ +++ ++ + +P + I TDII
Sbjct: 233 LIEAIRNPKVYKFIHLPVQSGDDRVLKLMNRKYTVDEYKELISEIRHKIPFVNITTDIIV 292
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G PGE +E FN T+ L+KE +F ++H++ + RP T +A M +VP ++ KKR + ++
Sbjct: 293 GHPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSIKKKRIQIANKLY 352
Query: 415 E--AFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVG 468
E A + +L G R+ TE+ G +G Y+ V++ S LG VKIT
Sbjct: 353 EDLALSIHLDYVGSTSRVITTELGRKGSVIGRLMNYIPVVIRSENVELGKWYDVKITEAS 412
Query: 469 RWSVFG 474
+ + G
Sbjct: 413 FYDLRG 418
>gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
DSM 2375]
gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222434703|gb|EEE41868.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanobrevibacter
smithii DSM 2375]
Length = 426
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/427 (35%), Positives = 241/427 (56%), Gaps = 15/427 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T+GC+ N++D++ M G L L D+ E AD+ ++NTC VK P+++ + I +
Sbjct: 3 VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62
Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
K K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 63 LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKNILNNVDE 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I + ++HP VY+F+H+PVQ+GS+ VLS M R +TL + +V +P + +A DII
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G+P E+DEDF TV+L++ K +H+S++ R G ++ +K++P V+KKRSR L+ +
Sbjct: 298 GYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIK 357
Query: 415 EAFTPYLGME--GRVERIWITEIAADGIHLGYVQVLVPST--GNMLGTSALVKITSVGRW 470
T E G V+ + E+ + G + +P G LG VKIT
Sbjct: 358 TEITEEENKELVGSVQNAVVVEVGSKGGFIAKTDSYIPVIVDGVNLGDFIKVKITDATAT 417
Query: 471 SVFGEVI 477
+ G+V+
Sbjct: 418 YLKGDVV 424
>gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
Length = 426
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/427 (35%), Positives = 241/427 (56%), Gaps = 15/427 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T+GC+ N++D++ M G L L D+ E AD+ ++NTC VK P+++ + I +
Sbjct: 3 VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62
Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
K K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 63 LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKDILNNVDE 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I + ++HP VY+F+H+PVQ+GS+ VLS M R +TL + +V +P + +A DII
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G+P E+DEDF TV+L++ K +H+S++ R G ++ +K++P V+KKRSR L+ +
Sbjct: 298 GYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIK 357
Query: 415 EAFTPYLGME--GRVERIWITEIAADGIHLGYVQVLVPST--GNMLGTSALVKITSVGRW 470
T E G V+ + E+ + G + +P G LG VKIT
Sbjct: 358 TEITEEENKELVGSVQNAVVVEVGSKGGFIAKTDSYIPVIVDGVNLGDFIKVKITDATAT 417
Query: 471 SVFGEVI 477
+ G+V+
Sbjct: 418 YLKGDVV 424
>gi|410720277|ref|ZP_11359634.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
gi|410601324|gb|EKQ55841.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
Length = 425
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/417 (36%), Positives = 240/417 (57%), Gaps = 19/417 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYM+TFGC+ NQ+DS+ MAG L G + + E+AD+ +INTC VK P++ + I K
Sbjct: 3 IYMETFGCTFNQADSQIMAGLLEETGGKIVKSPEDADVIIINTCYVKQPTEQKITNRIGK 62
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVSI----VGVQQIDRVVEVVEETLKGHEVRLL 174
++ +K L++AGC+ D ++LE ++ +G ++I+ EVVE + GH R
Sbjct: 63 LQAQFPQKKLIIAGCMV--DIDSEKLEKMAPQAGWIGARRINSAPEVVEAVMNGHLARET 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
LP+ R N V IL I GCLG C+YC T+ ARG L SY L +
Sbjct: 121 GHGDDIKTCLPRKRSNPMVHILQICEGCLGKCSYCCTRFARGGLQSYPTSLLKAEAEQAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
ADG E+ L+++DT AYG+D G +L L+N I + +G +RIGM +P I L+
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDTGESLADLINEICS---IEGDFRIRIGMMHPKNIKGDLEA 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I ++ VY FLH+P+QSGS+ +LS MNR +++ ++ +V+ +P + +ATDII
Sbjct: 238 IITSFKNEKVYKFLHLPLQSGSNQILSDMNRGHSVEEYLEIVNHFQIEIPELSLATDIIL 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 412
G+P E + DF T+ +I+E + +HIS+++ RPGT ++ + ++ ++K+RSR+L
Sbjct: 298 GYPTENENDFQGTMEVIREIRPDFLHISKYHHRPGTRSSLLPEIDHQIMKRRSRKLNDLK 357
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKIT 465
V A + G ++I IT+ + G +LG Y V+V +LGT V+IT
Sbjct: 358 VNIATGNNQKLLGTHQKILITDKGSKGGYLGRSNSYKTVVVNEA--LLGTYVDVEIT 412
>gi|333986908|ref|YP_004519515.1| MiaB family RNA modification protein [Methanobacterium sp. SWAN-1]
gi|333825052|gb|AEG17714.1| RNA modification enzyme, MiaB family [Methanobacterium sp. SWAN-1]
Length = 425
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 241/429 (56%), Gaps = 19/429 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++TFGC+ NQ+DS+ MAG L + E+AD+ +INTC VK P++ I K
Sbjct: 3 IYIETFGCTFNQADSQIMAGLLKENQEKIVSKPEDADVIIINTCYVKHPTEQKAINRIHK 62
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELE----GVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K L+++GC+ + D K+L+ S +G ++ E+V+ G VR +
Sbjct: 63 VQKQFPDKKLIISGCMVE--IDKKKLQKAAPNASWIGPHKVTSTPEIVKSVFNGENVRSI 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ LPK+R N F+ I+ I GC G C+YC T+ ARG L SY E + V +
Sbjct: 121 GYGTDCKVCLPKIRSNPFIHIVQICEGCNGDCSYCCTRFARGSLQSYPTELIKREVEEAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A+G E+ ++++DT AYG+D G +L L+N I +G +R+GM +P I++ +
Sbjct: 181 AEGCVEIQITAQDTAAYGKDTGTSLSKLINEITT---IEGDFKIRVGMMHPKSIMDDVDG 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I + ++ VY FLH+P+QSG+D VL MNR +T++DF+ VV E +P M I+TD+I
Sbjct: 238 IIKAFKNEKVYKFLHIPIQSGNDDVLRDMNRGHTVADFKDVVSKFKENIPEMSISTDVIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G+P E ++ F T+NL+ + + ++IS++ RPGT ++ M+++ +KKRS+ L +
Sbjct: 298 GYPTEDEDAFKDTLNLVADIRPDFINISKYGHRPGTRSSLMEEISHESMKKRSKSLNDLK 357
Query: 415 EA--FTPYLGMEGRVERIWITEIAADGIHL----GYVQVLVPSTGNMLGTSALVKITSVG 468
A + L M G + + IT + G ++ Y QV+V + ++G+ + KI
Sbjct: 358 TAISYENNLKMLGSTQNVVITGKGSKGGYISRANSYKQVIVENA--VIGSFSEAKIIDAK 415
Query: 469 RWSVFGEVI 477
+ G +I
Sbjct: 416 STYLMGNLI 424
>gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 432
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 218/375 (58%), Gaps = 22/375 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GCS N+SDS+ M L G ++ EAD+ ++NTC VK+P++ M I +
Sbjct: 3 FYIETYGCSMNRSDSQIMEKLLEEAGLIRVNDPREADVIVLNTCNVKTPTEQRM---IQR 59
Query: 121 CKSAKK--PLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K PLVVAGC+ QG + LK+ V +V ++ID++VE V + G L
Sbjct: 60 ARELSKYAPLVVAGCMAKSQGYK-LKDFSKV-LVAPREIDKIVEAVNSAIAGRRAEFLEW 117
Query: 177 KKLPALDLPKVRRN--KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ +D R+ + V I+PI GC+GACTYC T+ ARG L S+ +++ +
Sbjct: 118 R---FIDKSSYLRDPLELVGIIPIAEGCMGACTYCITRLARGGLTSFPKRNILRLAEHFL 174
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G E+WL+SEDT AYGRD+G NL L+ + ++LP G +R+GM P L L E
Sbjct: 175 RKGAVELWLTSEDTAAYGRDMGENLANLIMDL-SDLP--GDFRIRVGMMTPSSALPILSE 231
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ R VY F H+PVQSGSD VL M R YT+ F ++VD + + + + IATDII
Sbjct: 232 LIGAYRSRKVYKFFHLPVQSGSDRVLEDMGRNYTVDQFLSMVDFIRKELSDVSIATDIIV 291
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFP E +EDF T+ +++ K V++S+F RPGT AA M+K+P A+V +RS+E+ +
Sbjct: 292 GFPTEDEEDFESTLAILERLKPDVVNVSKFGARPGTKAASMRKLPDAIVSRRSKEVNELV 351
Query: 415 EAFTP-----YLGME 424
E YLG E
Sbjct: 352 ERIKEEVNERYLGRE 366
>gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M]
gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M]
Length = 413
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 213/378 (56%), Gaps = 26/378 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +++GC+ N+ D+ YM Q+ T+N EEAD+ +IN+C VK P+++ + I +
Sbjct: 3 VYFESYGCTLNKRDTLYMQAQIEN----TTNNLEEADVVVINSCIVKQPTETKILYRINQ 58
Query: 121 CKSAKKPLVVAGC-VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K +V+ GC V + KEL+ +S+V + DR+ E +E T KG V L +KK+
Sbjct: 59 LKKMGKKIVLTGCMVSEPYLKYKELQDISLVNIYNQDRIKEAIERTYKGERVLFLEKKKI 118
Query: 180 P---ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
A L K R I+ I GCL CTYC TK AR SY + + + +
Sbjct: 119 YKEFARPLSKAR-----AIIQIQEGCLWRCTYCGTKLARSMFYSYPPKLIKREIEEKLKQ 173
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G+K +L+ DT YG+DI +L LL ++ +G +R+GM NP F LE + E+
Sbjct: 174 GIKIFYLTGPDTATYGKDINYSLADLLKDLIE---IEGDFYIRVGMANPTFFLEQIDELI 230
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+V + ++ F H+PVQSGS+ VL MNR YT+ +++ ++ L + P TDII G+
Sbjct: 231 DVFKSNKIFKFFHLPVQSGSNKVLKDMNRPYTIEEYKELIYKLRKHFPLATYVTDIIVGY 290
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
P ET+EDF QT+ L++E KF ++IS+F+ RPGT A +K++ +V R + L VF
Sbjct: 291 PTETEEDFEQTLELVREIKFDGINISRFWRRPGTIAWNLKQLDPEIVTNRVKRLKEVF-- 348
Query: 417 FTPYLGMEGRVER--IWI 432
++G ER +W+
Sbjct: 349 ------LQGAYERNKLWL 360
>gi|347523463|ref|YP_004781033.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
gi|343460345|gb|AEM38781.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
Length = 453
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 156/422 (36%), Positives = 237/422 (56%), Gaps = 25/422 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N +DS M+ L++ GY + D+ E+AD+ +INTCTV+ ++ M I +
Sbjct: 6 VYIETYGCALNHADSAIMSSVLASRGYTIVDSIEDADVIIINTCTVRLDTEQRMVKRIKE 65
Query: 121 C--KSAK-KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL-- 173
K K K +V+AGC+ + L + G +V + R+ VE G E+ +
Sbjct: 66 VWRKYGKSKRIVIAGCLAKAQPYLVKRVAPGAVLVSPGNVHRIYLAVE---SGTELLVED 122
Query: 174 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L RK+LP P+ ++ V + I GCL C +C TK AR +L S +E +V V+
Sbjct: 123 PLERKRLP----PRPWKHGVVAEVVIQEGCLSDCAFCITKFARRYLRSQPIEEIVDYVKK 178
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFI 288
++ GV E+ L+ +DT YG DI LP LL I V E P +R+GM +P
Sbjct: 179 LVEAGVVEIRLTGQDTATYGVDIYGKRMLPKLLEEIASVVESPDGCKAYVRVGMMSPDQA 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L E+ +++ HPC++ FLH+PVQSG D VL M REYT+ ++R +V +PG+ I
Sbjct: 239 LPFWDELLDIMSHPCIFKFLHIPVQSGDDRVLRVMRREYTVDEYRRMVYEARSKLPGVTI 298
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
ATDII G PGE +E F TV L++E F +VH++Q+ PRP T AAR+ +VP V K+RSR
Sbjct: 299 ATDIIVGHPGEDEEAFENTVRLVEELLFERVHLAQYTPRPRTLAARLPQVPDPVKKERSR 358
Query: 409 ELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALV 462
L V E + + G + +TE ++G + Y+QV++P LG++
Sbjct: 359 RLQRVIEDVGYRVHASYVGANALLVVTEEGSEGTLVARTHNYMQVILPPGSANLGSTIEA 418
Query: 463 KI 464
KI
Sbjct: 419 KI 420
>gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote
AD1000-23-H12]
Length = 422
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 214/358 (59%), Gaps = 5/358 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++++GCS N +D+E ++G LS GY + +N ++D+ +I TCTVK P+ + M I
Sbjct: 3 VHVESYGCSANIADAEMISGLLSQKGYNVLNNDPDSDLNVIVTCTVKDPTFNKMVKRIKS 62
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S KPL++AGC+P+ D L+ + S++ + V+ + L G + + K+
Sbjct: 63 LSSTGKPLIIAGCMPKTELDKILQINDQASLLDPGSVHLAVDAAKAALAGEKFESISSKR 122
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+ LP++R N V I ++ GCL CT+C+ K ARG L SY +V + + DG
Sbjct: 123 SNKVLLPRLRSNPVVHIAEVSQGCLSKCTFCQVKFARGGLVSYRPLDIVREIEQAVIDGC 182
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+WL+S+D G YG+DI +LP LLN I+ ++ DG M+R+GM NP + E + ++
Sbjct: 183 REIWLTSQDIGCYGKDIKTSLPELLN-IICDI--DGDFMVRVGMMNPMHLDEIIDDLITS 239
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
P ++ FLH+PVQSGSD +L M R ++++DF V P + ++TDII GFP
Sbjct: 240 YMDPKIFKFLHIPVQSGSDEILKLMKRMHSVNDFELTVKKFRNAFPNISLSTDIIVGFPD 299
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
ETD F +T++L++ F V+IS+F RPGT A +P +VK+RS+ + +V ++
Sbjct: 300 ETDLQFQETLDLVRRINFDTVNISRFGSRPGTEAYSKPILPHKIVKERSKLMHTVAKS 357
>gi|325959667|ref|YP_004291133.1| MiaB family RNA modification protein [Methanobacterium sp. AL-21]
gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
Length = 425
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 134/359 (37%), Positives = 213/359 (59%), Gaps = 11/359 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T GC+ NQ+DS+ MAG L L D E+AD ++NTC VK P++ + T I K
Sbjct: 3 VYIDTVGCTFNQADSQIMAGILKENRVELVDTPEDADTIIMNTCYVKHPTEQKVLTKIKK 62
Query: 121 CKSA--KKPLVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + L+++GC+ P+ D S +G +I E+V +G+ VR
Sbjct: 63 MQEQYPESKLLISGCMVEIDPEKLADAAP--EASWIGPHKIKSTYEIVNSVHEGNIVRET 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
P + LPKVR N + I+ I GC G CTYC T+ ARG + SY+ E + +
Sbjct: 121 GFSSEPKVGLPKVRTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSYSSEMIKKEAEQAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G KE+ L+++DT AYGRD G +L L+ ++++++ DG LR+GM +P I+ +
Sbjct: 181 TEGCKEIQLTAQDTAAYGRDTGESLADLI-SMISDI--DGKFKLRVGMMHPKSIMNQVDP 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I + + Y FLH+P+QSGSD VL MNR +T+ +++T+V E +P + I+TDII
Sbjct: 238 IIKAFKKGKCYKFLHLPIQSGSDTVLHDMNRCHTVDEYKTIVSRFREEIPDISISTDIIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
G+P ETD+DF T+NLIKE + +HIS++ RPGT +++++++ +K+RS+ L +
Sbjct: 298 GYPTETDDDFKATLNLIKELEPDFLHISKYMHRPGTTSSQLEEIEHETMKERSKALNDL 356
>gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
Length = 428
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 218/359 (60%), Gaps = 11/359 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ NQ+DSE MAG L+ L EEAD ++NTC VK P++S + I
Sbjct: 6 VFIETYGCTFNQADSEIMAGILNENNIGLVSTEEEADAIIVNTCYVKLPTESKVINRIKN 65
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K ++V GC+ + D K+LE + S +G Q+++ +VV+ T+ G VR
Sbjct: 66 LQKQYPDKKIIVGGCMVE--VDPKKLEAIGPNCSWIGPHQLNKTADVVKSTIGGEIVREF 123
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
P + +PK+R++ ++ ++ I GCLGACTYC T+ ARGHL SY ++ +V R I
Sbjct: 124 GFSDEPKVCVPKIRKDPYIHVIQICEGCLGACTYCCTRFARGHLNSYPIKDIVEEARLAI 183
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G+D G L L+ VA L DG +R+GM +P I L
Sbjct: 184 EDGCVEIELTAQDTSAFGKDTGEKLSDLIKE-VASL--DGDFRVRVGMMHPRNIGNDLDN 240
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E + VY F+H+P+QSGSD VL M R +T+ D++ +V + + +P + IATDII
Sbjct: 241 LIEAFKMEKVYDFIHLPIQSGSDKVLREMGRNHTVDDYKNIVYSFKQAIPDITIATDIII 300
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
G+P ET+EDF +T LI+E KF +H+S++ R G ++ + +P +K+RS+ L+ +
Sbjct: 301 GYPTETEEDFMKTAELIREIKFNLIHLSKYQHREGAISSSLDNIPFDDMKRRSKYLSEI 359
>gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
sp.]
Length = 454
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 209/355 (58%), Gaps = 8/355 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + SD E +AG + GY L N +EAD +I TC VK + + M I +
Sbjct: 10 VWLEVYGCSSSLSDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKR 69
Query: 121 CKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S KPLVVAGC+ + +R + SIVG IDRV + L G + LL
Sbjct: 70 LSS--KPLVVAGCMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GS 126
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+ + LPK+R N + ++ I GCL CT+C+T+ A+G L SY + +V +VR + G
Sbjct: 127 MQKVGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGC 186
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+EVWL+S D GAYGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E
Sbjct: 187 REVWLTSTDNGAYGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEA 243
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
R V+ F+H+PVQSGSD VL M R + S F +V + IATD+I GFP
Sbjct: 244 YRDDKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPS 303
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
E++EDF+ +++L+ E + V++S++ RPGT A+RM+++ V+ +RS+ + V
Sbjct: 304 ESEEDFDASIDLLLEVEPDIVNVSKYSARPGTEASRMEQLSKQVINERSKVMHDV 358
>gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
Length = 421
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 229/423 (54%), Gaps = 14/423 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS +Q+DSE ++G L G+ L + EE+D +I TC VK + + M I
Sbjct: 4 IWIEAYGCSASQADSEMISGLLVNGGHTLAASPEESDAGVIVTCAVKDATANRMVHRIKM 63
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+PLVVAGC+P+ + G +++G I R V VVE L+G L
Sbjct: 64 L--GGRPLVVAGCLPKAEPGTMARISPGAALMGPNSIGRTVPVVEAALRGERRIELDDTD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L LPKVR N+ V I+ I GCL CT+C+TK A+G LGSY + +V +VR + DG
Sbjct: 122 LTKTGLPKVRLNEAVGIVEIASGCLSECTFCQTKLAKGDLGSYRIGDIVRQVRAEVDDGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
EVWL+S D G YG DI +LP LL+A++ +P G +R+GM NP ++ + +A+
Sbjct: 182 SEVWLTSTDNGCYGFDISEDLPGLLDAVIT-IP--GRFRVRVGMMNPMYMPRIREGLAKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH+PVQSGS +L M R T F G I+TD+I GFPG
Sbjct: 239 FQSDKLYRFLHIPVQSGSGRILGEMGRGRTAGIFADAARRFRSEFGGFTISTDVIVGFPG 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV----- 413
ETD D+ T LI+E + V++S++ RPGT AA ++V VK+RS+ + +
Sbjct: 299 ETDGDYESTEALIEEVRPDTVNLSRYSARPGTEAAGREQVDVQTVKRRSKRMYELSCRIS 358
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 473
+ ++G +G V TE G + Y V + G +LG + V+IT +
Sbjct: 359 LDRNKEWVGWKGDVLFSEATEGGIRGRNREYKPVY--AEGAVLGETRQVRITKATNHCLV 416
Query: 474 GEV 476
GE+
Sbjct: 417 GEI 419
>gi|408403887|ref|YP_006861870.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364483|gb|AFU58213.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 435
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 210/355 (59%), Gaps = 8/355 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + +DSE ++G L GY + E + LI TC+VK ++ M + I
Sbjct: 9 VWVEAYGCSASMADSEMISGLLKGAGYEIASKQSEGALNLIVTCSVKDTTEHRMVSRIKA 68
Query: 121 CKSAKKPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ KPLVVAGC+P+ R ++ L + S++G I++ V+VV L G + L
Sbjct: 69 MSKSGKPLVVAGCLPKADRAKVESLNSLASLLGPHSIEKAVDVVGSALAGGRLVALEDSV 128
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ +++ I G
Sbjct: 129 ADKVNIPRVRLNPMVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKADINAGC 188
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KEVWL+S D G YG+D+G +L LL A + +G +R+GM NP ++ E L + +V
Sbjct: 189 KEVWLASTDNGCYGKDMGTDLVELLRACCS---IEGDFKIRLGMMNPMYVPEMLNRMVDV 245
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ ++ FLH+PV+SGSD VL M R +T F V +P M I+TD+I GFP
Sbjct: 246 FYENEKLFRFLHIPVESGSDRVLRKMKRGHTTKTFLDAVQAFRSKIPEMTISTDVIVGFP 305
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSREL 410
ET++DF +T++L++ + V+IS++ RPGT AA+ K +V S V K+RS L
Sbjct: 306 SETEDDFKETLDLVERAEPDIVNISRYSARPGTEAAKWKGMRVSSQVAKERSERL 360
>gi|388254688|gb|AFK24805.1| MiaB-like tRNA modifying enzyme [uncultured archaeon]
Length = 450
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 208/358 (58%), Gaps = 8/358 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + +DSE ++G L GY + N E + LI TC+VK ++ M + I
Sbjct: 27 VWIEAYGCSASMADSEMISGLLKGSGYEIASNQSEGALNLIVTCSVKDTTEHRMVSRIKA 86
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ KPLV+AGC+P+ R E S++G I+ VV L G + L
Sbjct: 87 LSRSGKPLVIAGCLPKADRAKVEALNSSASLLGPHSIESAPAVVGSALAGSPMVALEDSA 146
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ ++++ + G
Sbjct: 147 SDKINIPRVRLNPTVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKSDVEAGC 206
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG+D+G +L LLNA + +G M+R+GM NP ++ E L +
Sbjct: 207 KEIWLASTDNGCYGKDMGTDLVELLNACSS---IEGDFMIRLGMMNPMYMPEMLDRMVNT 263
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ + ++ FLH+PV+SGSD +L M R ++ F V T +P M I+TDII GFP
Sbjct: 264 FQENDKLFKFLHIPVESGSDRMLRKMKRGHSAKTFLDAVKTFRSKIPEMTISTDIIVGFP 323
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSRELTSV 413
ET+ DF +T+NL++ + V+IS++ RPGT AA+ K +V S V K RS L ++
Sbjct: 324 SETESDFEETLNLVERAEPDIVNISRYGARPGTEAAKWKGMRVSSQVAKDRSERLHAL 381
>gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348]
gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM
5348]
Length = 418
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 144/415 (34%), Positives = 223/415 (53%), Gaps = 22/415 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY +T+GC+ N+ D+ M L + + ++ E+AD+ +INTC V+ ++ M I +
Sbjct: 3 IYFETYGCALNKGDTYSMMTLLKGRNHEIVNSEEQADVLVINTCAVRMETEEKMKKRILE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LVVAGC+ L S++G Q I VV+ VE + LH +
Sbjct: 63 LSKTGKKLVVAGCLAGAEPGLVMSLAPQSSLIGPQSIGDVVKAVESR---ERIVSLH-GE 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
LP++ LP V + ++PI GC G+C +C TK AR L SY +V R I G
Sbjct: 119 LPSV-LPSVFEG-LISVIPIADGCAGSCNFCITKLARKELRSYPPRMIVETARKAIEKGA 176
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ L+ +DT AYG D+G + I L +V E+ +G M+R+GM P + L ++ +
Sbjct: 177 KEIELTGQDTAAYGLDLGRD--IRLADLVGEVSSLEGDFMVRVGMMTPELAMRQLDDLLD 234
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+P VY F H+PVQSG+D VL AMNR+YTL +FR +V + + P + I TDII G P
Sbjct: 235 AWDNPKVYKFFHLPVQSGNDQVLRAMNRKYTLDEFREIVREIRKRFPLVNITTDIIVGHP 294
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
GE + F T+NL+KE +F ++HI+ + RP T +A M +VP + K+R + +++E
Sbjct: 295 GEDENAFEDTLNLMKELRFERIHIAMYSLRPNTRSAMMTQVPGPIKKERLKRAVTLYEEL 354
Query: 418 TPYLGME--GRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRW 470
+ + E GR ++ + E D +G +P +VK +G+W
Sbjct: 355 SREIHREYVGRKMKVLVLENGKDNTKIGRTLNYIP---------VIVKDADLGKW 400
>gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091]
gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae
DSM 3091]
Length = 424
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 224/394 (56%), Gaps = 17/394 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T GC+ NQ+D++ MA L A Y + + EEAD+ ++NTC VK P++ M T I K
Sbjct: 3 IYLETHGCTFNQADTDIMANIL-AKKYDIVYDVEEADVIILNTCYVKLPTEQKMITKIRK 61
Query: 121 CKSA--KKPLVVAGC-VPQGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
K+ K L++ GC V + L++ G +G ++D+V EVVE+ + G V +
Sbjct: 62 YKTEFPDKKLIIGGCMVEVDDKRLEKFAGDDCWIGPHKLDKVDEVVEKAINGEVVHEYGK 121
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ K V IL I GC G CT+C T+ ARG L SY ++ +V + +
Sbjct: 122 TRAIKAGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLISYPIDVIVEEAKDAVEH 181
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ ++++DT +G D G + LLN + A +G +R+GM NP I L E+
Sbjct: 182 GCKELQVTAQDTACFGMDTGESFADLLNKLGA---IEGDFRIRVGMMNPQSIKNQLHEVI 238
Query: 297 EVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ ++ +++F+H+P+QSGS VL MNR++TL +++ +++ + +P M +ATDII G
Sbjct: 239 DAFKNNDKIFNFVHLPIQSGSPKVLKEMNRKHTLDEYKYILNEFRKEIPQMSLATDIIVG 298
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-- 413
+P ET+EDFNQT+ L+KE K VHIS++ RPG + +K++ ++K RS + V
Sbjct: 299 YPTETEEDFNQTLELLKEIKPDIVHISKYMHRPGAKSNHLKEIDHNIMKNRSHRVNQVKT 358
Query: 414 ---FEAFTPYLGMEGRVERIWITEIAADGIHLGY 444
E Y E ++ + IT + G ++GY
Sbjct: 359 EVMLEKNKEY---ENTIQNVLITSKGSSGGYVGY 389
>gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis
str. Marburg]
gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter
marburgensis str. Marburg]
Length = 427
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 222/398 (55%), Gaps = 14/398 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC+ NQ+DSE MAG LS G +LT +EAD+ ++NTC VK P++ + I +
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLSEAGASLT-GIDEADVIILNTCYVKHPTEHKVINRIKR 64
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K LVVAGC+ + D ++LE +S +G Q+ R EVV +G R+
Sbjct: 65 IREMYPDKGLVVAGCMVEI--DPQKLESISGDASWLGPHQLMRTAEVVGAAYRGDVKRIT 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ +P+VR N + I+ I GC G+C+YC T+ ARG + SY + +V R I
Sbjct: 123 GFTSDVKVGVPRVRSNPLIHIIQICEGCSGSCSYCCTRFARGSIQSYPSDIIVQEAREAI 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G +E+ L+++DT AYG D G L L+ I E+P G +R+GM +P +L L
Sbjct: 183 EAGCREIQLTAQDTAAYGSDTGERLSDLIREI-TEIP--GDFRVRVGMMHPASVLRDLDG 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E R VYSFLH+PVQSGSD VL M R +T+ DFR +VD +P + IATDII
Sbjct: 240 LVEAFRSEKVYSFLHLPVQSGSDRVLRDMGRGHTVDDFRMIVDRFRSRIPEISIATDIIV 299
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G+P E ++DF T L++E + +H+S++ RP ++ + ++ +++RS+ + +
Sbjct: 300 GYPTEGEDDFLDTCRLLEEVRPGFIHLSKYRHRPRAFSSSLDEIDFRELRRRSKAVEELK 359
Query: 415 EAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVP 450
T + G + I I E G +G +P
Sbjct: 360 GRITEEENRRLVGTTQNILIVERGRKGGFIGRTDSYIP 397
>gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4]
gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4]
Length = 418
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 147/427 (34%), Positives = 233/427 (54%), Gaps = 21/427 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + + + E AD+ +INTC V+ ++ M I +
Sbjct: 3 VYFETYGCALNKGDTYSMMSLLRERNHEIVETLEGADVVVINTCAVRMETEEKMKKRIRE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LV+AGC+ L S++G Q I +V+VVE +E + K
Sbjct: 63 LSKTGKKLVIAGCLTGAQPGLVSSLSPSSSMIGPQSISDIVKVVE----SNERVISLDSK 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P++ LP+V + + ++PI GC G C +C TK AR +L SY + ++V V+ +I+ G
Sbjct: 119 TPSI-LPRVF-DGLISVIPIEDGCAGNCNFCITKLARRNLRSYPLRNIVETVKRMISQGA 176
Query: 239 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ L+ +DT YG D+G V LP ++ VA L +G M+R+GM P + HL I
Sbjct: 177 KEIELTGQDTAVYGLDMGGKVTLPDVVKE-VASL--EGDFMIRVGMMTPEMAMRHLDSIL 233
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E +P VY F H+PVQSG+D VL MNR+YT+ +FR +V + + + I TDII G
Sbjct: 234 EAWENPKVYKFFHIPVQSGNDKVLREMNRKYTVDEFRAIVKEIRKKFRLVNITTDIIVGH 293
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
PGE D F T+NL+KE +F ++HI+ + RP T ++ + +VP + K+R + S++E
Sbjct: 294 PGEDDSAFEDTLNLMKELRFERIHIAMYSIRPNTRSSMLAQVPGPIKKERLKRAVSLYEE 353
Query: 417 FTPYLGME--GRVERIWITEIAAD----GIHLGYVQVLVPSTGNMLGTSALVKITSVGRW 470
+ + E GR R+ E D G + Y+ V++ +LG VKI +
Sbjct: 354 LSREVHKEYLGRQMRVLALERGKDDTIIGRTINYIPVILSDA--VLGNWYDVKIVDSSFF 411
Query: 471 SVFGEVI 477
+ GE++
Sbjct: 412 DLRGEIV 418
>gi|348019711|gb|AEP43797.1| radical sam [Biston betularia]
Length = 188
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 2/184 (1%)
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R +GV E
Sbjct: 7 SLLLPKVRKNPHIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARLSFQEGVVE 66
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+ILEHL+E+A ++
Sbjct: 67 IWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPYILEHLEEVARIMH 124
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
HP VY FLHVPVQSGSD VLS M REY+ DF VVD L E VPG+ IATDIICGFP ET
Sbjct: 125 HPRVYKFLHVPVQSGSDQVLSDMKREYSRKDFEHVVDFLRERVPGITIATDIICGFPTET 184
Query: 361 DEDF 364
+ DF
Sbjct: 185 EADF 188
>gi|444728295|gb|ELW68754.1| CDK5 regulatory subunit-associated protein 1-like 1 [Tupaia
chinensis]
Length = 494
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 141/166 (84%), Gaps = 2/166 (1%)
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
GV E+WL+SEDTGAYGRD+G +LP LL +VA +P +G+ MLR+GMTNPP+ILEHL+E+A
Sbjct: 233 GVCEIWLTSEDTGAYGRDVGTDLPTLLWRLVAVIP-EGA-MLRLGMTNPPYILEHLEEMA 290
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGF
Sbjct: 291 KILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGF 350
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
PGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V
Sbjct: 351 PGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQV 396
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F V PK K + H S S S IPG +
Sbjct: 10 LDDIEDIVSQEDSKPRDRHF----ARKHVVPKVRKRNAQKHVQEESSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYQMTENASDADLWLLNSCTVKNPAEDHFRNAI-K 123
Query: 121 CKSA 124
C +A
Sbjct: 124 CLNA 127
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ CL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 122 IKCLNACTYCKTKHARGNLASYPIDELVDRAK 153
>gi|374857474|dbj|BAL60326.1| hypothetical conserved protein, partial [uncultured crenarchaeote]
Length = 434
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 200/343 (58%), Gaps = 8/343 (2%)
Query: 73 SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132
SD E +AG + GY L N +EAD +I TC VK + + M I + S KPLVVAG
Sbjct: 2 SDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKRLSS--KPLVVAG 59
Query: 133 CVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN 190
C+ + +R + SIVG IDRV + L G + LL + + LPK+R N
Sbjct: 60 CMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GSMQKVGLPKIRVN 118
Query: 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA 250
+ ++ I GCL CT+C+T+ A+G L SY + +V +VR + G +EVWL+S D GA
Sbjct: 119 PVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGCREVWLTSTDNGA 178
Query: 251 YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHV 310
YGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E R V+ F+H+
Sbjct: 179 YGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEAYRDDKVFKFIHI 235
Query: 311 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370
PVQSGSD VL M R + S F +V + IATD+I GFP E++EDF+ +++L
Sbjct: 236 PVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPSESEEDFDASIDL 295
Query: 371 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
+ E + V++S++ RPGT A+RM+++ V+ +RS+ + V
Sbjct: 296 LLEVEPDIVNVSKYSARPGTEASRMEQLSKQVINERSKVMHDV 338
>gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|6226399|sp|O26914.1|AMTAB_METTH RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 424
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/398 (35%), Positives = 223/398 (56%), Gaps = 14/398 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC+ NQ+DSE MAG L G LT ++AD+ +INTC VK P++ + I K
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLREEGAVLT-GIDDADVIIINTCYVKHPTEHKVINRIKK 64
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ +K LVVAGC+ + D +LE +S +G Q+ R + V G R+
Sbjct: 65 IQETYPEKGLVVAGCMVEI--DPSKLEAISGDASWLGPHQLRRAPQAVRAASNGLVERIT 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ +P+VR N + I+PI GC G+C+YC T+ ARG + SY + ++ R +
Sbjct: 123 GFTSDVKVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAV 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A G +E+ L+++DT AYG D G L ++ I + +P G+ +R+GM +P +L L
Sbjct: 183 ASGCREIQLTAQDTAAYGVDTGEKLSDIIKGI-SGIP--GNFRIRVGMMHPASVLRDLDG 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E + VYSFLH+PVQSGSD+VL+ M R +T+ +FR +V+ +P + IATDII
Sbjct: 240 LVEAFKSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATDIIV 299
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G+P E EDF T +L++E K +H+S++ RP ++ + ++ +++RSR L +
Sbjct: 300 GYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFRELRRRSRALEELK 359
Query: 415 EAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVP 450
T + G + I + E G +G +P
Sbjct: 360 MRITEEENRRLVGSFQEILVVERGRKGGFIGRTGSYIP 397
>gi|336476780|ref|YP_004615921.1| MiaB-like tRNA modifying protein [Methanosalsum zhilinae DSM 4017]
gi|335930161|gb|AEH60702.1| MiaB-like tRNA modifying enzyme [Methanosalsum zhilinae DSM 4017]
Length = 431
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/363 (34%), Positives = 212/363 (58%), Gaps = 11/363 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ +GCS NQ+ +E MA +++ +G+ L D+ A +INTCTVKS ++ + I++
Sbjct: 3 VHILNYGCSANQASAEIMAAKINEYGHELVDDESSAQAVVINTCTVKSTTEKKILHRISE 62
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEG-VSIVGVQ---QIDRVVEVVEETLKG---HEVR 172
++ LVV GC+PQ +D+ E ++GV +I ++ ++ + KG +
Sbjct: 63 IGKTERELVVTGCMPQVQMKDIIEANSQAHVLGVNSITEIGNILNKIQNSNKGSVKDRIE 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL L++ ++R N + I I+ GC C+YC + ARG L S+ + +V V+
Sbjct: 123 LLSSVPEGFLNVDRIRHNPNIHICQISQGCNHRCSYCIVRDARGPLTSFDPKDIVDDVKK 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
I++G +EVW++S+D G YG DI +LP LLN ++ ++P +R+GM NP +L L
Sbjct: 183 AISEGCREVWITSQDNGQYGADIQSSLPELLN-MLCKIPEHFK--IRVGMMNPFSVLPIL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ + + +Y LH+P+QS S+ LSAMNR +++ D ++ + + TDI
Sbjct: 240 DDLIKAFENDKIYKLLHLPIQSASENTLSAMNRNHSMKDVEDIISRFRYRFGDLTLFTDI 299
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
I GFP ETD+DFN++V IKEY +++IS++ PRPGTPA + + S +V KRS+ L
Sbjct: 300 IVGFPYETDDDFNKSVEWIKEYCPDKINISRYTPRPGTPAFNYRNIDSRIVAKRSKTLHK 359
Query: 413 VFE 415
E
Sbjct: 360 ACE 362
>gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456]
gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 441
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 213/381 (55%), Gaps = 29/381 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N +D+ M LS+ GY+ T+ +EAD+ +INTCTV+ +++ M IA+
Sbjct: 6 VYIETYGCALNMADTAIMRSVLSSRGYSFTNCVDEADVIIINTCTVRLDTEARMKRRIAE 65
Query: 121 CKSAKKP----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
+ + LVVAGC+ R + VS V +D VE +G ++
Sbjct: 66 LAAIAEKTGARLVVAGCMASAQPYTVKRIAPKAVLVSTYNVHLVDIAVE------RGLDL 119
Query: 172 RLLHRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R+K L P R R K E+ PI GCLG C++C TK AR + S VE++V
Sbjct: 120 LTPPREKPKPLFKPTPRLMLRGKIAEV-PIAEGCLGDCSFCITKIARRRVYSRPVENIVK 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
VR ++ G E+ L+ +D YG D+ LP L+ ++ +G M+RIGM +P
Sbjct: 179 LVRELVRLGAVEIRLTGQDIAVYGIDLYGKRLLPELVRRVIEV---EGDFMVRIGMMSPD 235
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L E EV RHP V+ F+H+PVQSG D VL M R YT+ ++R +V + VPG+
Sbjct: 236 QLEPILDEFLEVFRHPKVFKFVHLPVQSGDDRVLRIMKRNYTVDEYRAIVREIRNKVPGV 295
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATDII G PGE +E F TV LI+E +F +VH++Q+ PR T AA + +VP V KKR
Sbjct: 296 MIATDIIVGHPGEDEEAFENTVRLIEELRFERVHLAQYTPRQRTVAAGLPQVPDPVKKKR 355
Query: 407 SRELTSV-----FEAFTPYLG 422
S+ LT V E Y+G
Sbjct: 356 SKRLTEVVMRIGLEEHRRYIG 376
>gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639]
gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
Length = 421
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 151/427 (35%), Positives = 230/427 (53%), Gaps = 19/427 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ DS M L G+ + DN ++A+I +INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKGDSYIMMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKE 62
Query: 121 CKSAK-KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K LVVAGC+ + S++G Q + ++V+VVE + K +V L K
Sbjct: 63 LKKYNDKRLVVAGCLASAEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDK 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L PKV K + ILPI GC G C +C TK AR L SY +V VR + G
Sbjct: 122 PLIT---PKVFDGK-IAILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKG 177
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIA 296
E+ LS +DT AYG D+G I L+ +V ++ +G M+RIGM P + + I
Sbjct: 178 AVEIELSGQDTAAYGLDLG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGII 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
EVLR VY F+H+PVQSG D VL MNR+YT+ +++ +V + + VP + I TDII G
Sbjct: 235 EVLRETKVYKFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGH 294
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 415
PGE + F T+ L+++ KF ++H++ + RP T +A MK+VP V K+R + ++E
Sbjct: 295 PGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEE 354
Query: 416 -AFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVGRW 470
A+ + + + TE G +G Y+ V++ LG V+I +
Sbjct: 355 LAYEIHSDYLNSIASVITTEYGRKGSVIGRTLNYIPVVIRQNVE-LGKRINVRINEASFY 413
Query: 471 SVFGEVI 477
+ GE I
Sbjct: 414 DLRGEPI 420
>gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum]
gi|343484572|dbj|BAJ50226.1| 2-methylthioadenine synthase [Candidatus Caldiarchaeum
subterraneum]
Length = 432
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 229/430 (53%), Gaps = 23/430 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ +Y + +GCS NQ+D E G L GY + + EAD ++ TC VK P+ M I
Sbjct: 12 QKVYAEVYGCSANQADGEIALGILQKQGYIMVERPNEADYVVLVTCAVKKPTADRMIHRI 71
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K S L+VAGC+ G + + + V+ V R + V ++GH K
Sbjct: 72 KKFSSLGPRLIVAGCMATG--EAERVRRVAPEAVLLPPRSITEVSAAIEGHGFDGGGTK- 128
Query: 179 LPALDLPKVRRNKFVEILPINVGC-LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LP++R+N + I+P++ GC C++C +R SY V ++V VR + +G
Sbjct: 129 ---LGLPRLRKNPVIAIVPVSEGCRWSRCSFCIVPRSRPGYESYPVRAVVDEVRKAVNEG 185
Query: 238 VKEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
+EVWL+S+D G+YG + G NL P L+ ++ + +G RIGM NP ++ L+++
Sbjct: 186 CREVWLTSQDMGSYGLESGRNLLPELIESVNSL---EGKFYTRIGMMNPIYLKPILQKLV 242
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+ +Y F+HVPVQSGSD VL MNR +++ F VV+ P + ++TD+I G+
Sbjct: 243 KAYSGEKIYKFIHVPVQSGSDKVLKDMNRGHSVQLFYHVVEAFRRRFPSITVSTDLIVGY 302
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV--- 413
P ETDEDF QT+ L+++ + V++S+++PRPGTP +K +P VV +R EL +
Sbjct: 303 PTETDEDFEQTLKLVEKTRPAVVNVSRYFPRPGTPGEGLKTLPHHVVARRVSELNDLLSK 362
Query: 414 --FEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSV 467
E+ +LG G V I E+ G +G Y +++ + LG ++ V
Sbjct: 363 IQLESNEHWLGWVGEV---LINEVGKKGKMMGRNFAYRPIVLDAPRESLGRFVEAEVVDV 419
Query: 468 GRWSVFGEVI 477
+ + G V+
Sbjct: 420 EKNYLLGRVL 429
>gi|110773695|ref|XP_396696.3| PREDICTED: CDKAL1-like protein-like [Apis mellifera]
Length = 264
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 120/209 (57%), Positives = 150/209 (71%), Gaps = 10/209 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N +AD+WL+N+CTVKSP++
Sbjct: 56 IPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E L+
Sbjct: 176 QQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEELL 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
V+T ++ +WL + YGRDIG
Sbjct: 236 -IVQTAFRKRLR-LWLHPK-IQDYGRDIG 261
>gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 423
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 205/353 (58%), Gaps = 6/353 (1%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KT+GC+ NQ+DS+ + L + ++ ++AD+ ++NTCTVK+P++ + L+ K
Sbjct: 4 YIKTYGCTLNQADSDIINSVLDSANIGQAESMQDADVIIVNTCTVKNPTEQKISDLLKKL 63
Query: 122 KSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S K+ ++V GC+ + D+ SIV + ++ + + V T G V + +K
Sbjct: 64 ESEKRKVLVTGCMAAANPDIISNASPSASIVTISNLEDMPDAVSRTASGERVVMSSLQKR 123
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L K R+ I P++ GC+ +C++C+TK AR L S++ + ++ V+ + G
Sbjct: 124 DRLASFKPRQGPVARI-PVSDGCMSSCSFCETKFARSALNSFSEDLILNAVKYSVKSGAV 182
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++S+D GAYG D N+ +L+ I +G +RIGM NP + ++ E A L
Sbjct: 183 EIDITSQDIGAYGADRKSNIALLMEKISR---IEGFFKVRIGMLNPERLAGYINEFASAL 239
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ Y F H+P+QSGSD+VL +M R YT+ + VD L VPG+ I TD+I G+P E
Sbjct: 240 GNEKFYKFAHLPLQSGSDSVLKSMRRNYTVDQYLEFVDVLRSYVPGISIETDMIVGYPTE 299
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
TDEDF ++ ++K ++ +IS+F R T A +MK++ ++K+RS E+ S
Sbjct: 300 TDEDFTNSIEVLKSFRPDVTNISRFGARRHTAAHKMKQLDQTLIKERSSEMYS 352
>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
Length = 423
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/403 (35%), Positives = 230/403 (57%), Gaps = 24/403 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ NQSDS+ M G L A + L D+++EAD+ +IN+C V ++ +
Sbjct: 4 VYIETYGCTMNQSDSDIMRGIL-AKNFELVDSADEADVVVINSCGVVDFTERKILKRAES 62
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K +V+AGC+P+ ++ E+ VS V ID VV+ V LKG + L+ R
Sbjct: 63 LKRQGKKVVMAGCLPRIATKKCLEVSDALVSPDNVHVIDLVVKSV---LKGEKPILIDRT 119
Query: 178 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ ++ V+R + I+ I GC G C++C T+ ARG L S+ ES+V VR +
Sbjct: 120 DVDKSEISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSFKFESIVDEVRKCV 179
Query: 235 ADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+G KE+ ++S+DTGAYG D G LP LL AI +E+ +G +R+GM NP +E L
Sbjct: 180 ENGFKEIQITSQDTGAYGLDKGRYMLPDLLRAI-SEI--EGDFRVRVGMMNPRHAVEMLD 236
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
++ +Y F+H+PVQSG + VL MNR++++ DF VV + ++TD+I
Sbjct: 237 DLLNAFESEKMYKFIHIPVQSGDENVLRDMNRDHSVEDFIEVVKAFRRRFDDVMVSTDVI 296
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
GFP ET+E F +T LIK + V+I++F RP TPA ++K++ +VK+RSR+LT +
Sbjct: 297 VGFPTETEEAFWRTYELIKNVEPDIVNITRFSKRPFTPAYKLKEIHGWIVKERSRKLTEL 356
Query: 414 FEAFTPYLGME------GRVERIWITEIAADGIHLGYVQVLVP 450
+ +G++ G+ R+ IT+ +G L P
Sbjct: 357 ARS----IGLKRNRRFIGKRLRVLITKNGKNGTKLARADSYRP 395
>gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
Length = 418
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 231/428 (53%), Gaps = 24/428 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ L DN EEADI +INTC V+ +++ M I +
Sbjct: 5 VYVEGYGCVLNTADTEIIKNSLKEAGFKLVDNLEEADIVVINTCVVRLETENRMIYRINE 64
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH--------EVR 172
K+ K +VVAGC+P+ ++ +++ + ++ + E++ ++ H E+
Sbjct: 65 LKNLGKEVVVAGCLPKALKN--KVKDFLHIYPRESYKAGEILRYYIEKHYRMPYIEEEIN 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
KKL L + + LPI GCLG C+YC K ARG L SY E +V + +
Sbjct: 123 KTLYKKLDYL------KPSLITPLPICEGCLGNCSYCIVKIARGKLISYPREKIVNKAKE 176
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+I GVK ++++++DT YG DIG NL LLN + +G ++R+GM + + L
Sbjct: 177 LINKGVKCLFITAQDTACYGFDIGDNLANLLNDLTQ---IEGEFIMRVGMMHAKNVEPIL 233
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+ E ++ V FLH+P+QSG D +L MNR YT+ +F+ +VD V + TDI
Sbjct: 234 DELIEAYQNEKVGKFLHLPLQSGDDEILKKMNRGYTVDEFKEIVDEFRRKVRNLCFTTDI 293
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
I GFPGET+E F T+ ++KE K +H +++ R GT AA+MK+V + + K+RS L
Sbjct: 294 IVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKRRSEILDK 353
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQ--VLVPSTGNMLGTSALVKITSVGRW 470
+ + YL + V + + +G GY +V G +G VKIT +
Sbjct: 354 LRRELS-YLNNKKYVGKTMRVLVLDEG--KGYTDNFKVVKFEGGEIGEFRKVKITDAKTF 410
Query: 471 SVFGEVIK 478
+ GE+ K
Sbjct: 411 GLRGEIEK 418
>gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
Length = 525
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 225/449 (50%), Gaps = 61/449 (13%)
Query: 45 LSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT---------DNSEE 95
L+ S SP + + M T GC HN ++S+ +A L G +T +++ +
Sbjct: 11 LAHAQSTSPLLTNVR-VMMVTMGCGHNAAESDIIASALQTAGAVITHSNGKYITPESARD 69
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS-------RDLKELEGVS 148
D+ IN+CTVK+PS+ + K +V+ GCVPQ R + +
Sbjct: 70 VDVLYINSCTVKNPSEDKAFVHVQKGLEVGTVVVLGGCVPQSYGTVNDELRKASAAKQLI 129
Query: 149 IVGV---QQIDRVVEVVEETLKGHEVRLLHRKKLPALDL--------------------- 184
I GV Q + + ++ E + H + H + PAL +
Sbjct: 130 ISGVLTQQWLAALPRLLREAIDLHILNNSHLLQ-PALRMTQPSDKAGVPAAISYVTKEAT 188
Query: 185 -----------PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
P R N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+
Sbjct: 189 KDVEVEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSS 248
Query: 234 IADGV-KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILE 290
+AD + +E+WL+ EDT A+GR+ +LL + + T ML+IGMT+P ++
Sbjct: 249 LADPIIRELWLTGEDTLAWGRESDATFAVLLQEVQKLFETENPTHKMLKIGMTDPDSVIN 308
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ +R VY FLH+PVQSGSD +L+ M R Y + F L VP + + T
Sbjct: 309 QEDSLISFMRCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLRSCSKLQSAVPDLCLDT 368
Query: 351 DIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
DIICGFPGETDED Q++NL + K F V+I+Q+Y R TPAA M++VP++ ++
Sbjct: 369 DIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASMEQVPASKKRE 428
Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWITE 434
R+RE++ V + G+V I + E
Sbjct: 429 RTREMSEVVKNSFRRDQYHGQVHDIMVLE 457
>gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
Length = 406
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 217/396 (54%), Gaps = 26/396 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T GC+ N SDS+ + + A G + EEAD ++NTC V + +M L A
Sbjct: 3 IYIETHGCTANASDSQAIRNSVLASGGEVVGTPEEADTVVVNTCAVTEFTSKSM--LKAI 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K + K +VVAGC+ L L+G+ R +++ E R+L +P
Sbjct: 61 KKYSGKRVVVAGCMAAAQPYL--LKGI---------RNIQIAEAPGAEAVARML--GIMP 107
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
A P ++ V + I GC G C+YC + RG L S VE +V ++T + G +E
Sbjct: 108 AAGRPFIKGTSAV--VSIAEGCRGHCSYCIVRLVRGPLRSAPVEEVVHSIKTALRMGARE 165
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+++DTGAYG D G LP L+ I L +G +R+GM NP I + L ++A +
Sbjct: 166 ILLTAQDTGAYGLDAGERLPALMKEI---LSIEGDYRIRLGMMNPFSIADILGDMARIFN 222
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
P VY F H+PVQSGSD +L M R YT S +R +V L + VPG+ ++TD I GFP ET
Sbjct: 223 DPRVYRFAHIPVQSGSDRILGLMERPYTESQYRDIVARLRQEVPGITLSTDYIVGFPTET 282
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP- 419
DEDF T++ ++ + +V+I++F PRPGTPAA M+ +P + K+RSR LT + T
Sbjct: 283 DEDFALTMDDLRSTRPLKVNITRFSPRPGTPAACMENLPFRIKKERSRALTQLHHGITSE 342
Query: 420 YL-GMEGRVERIWITEIAADGIHLG----YVQVLVP 450
Y+ GR + +TE G + Y V++P
Sbjct: 343 YMRDSAGRRLSVLVTEEGKPGTSVARDDCYHMVVIP 378
>gi|374632057|ref|ZP_09704431.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
gi|373525887|gb|EHP70667.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
Length = 418
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 209/376 (55%), Gaps = 18/376 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + LT++ AD+ +INTCTV+ ++ M I +
Sbjct: 3 VYFETYGCTLNKGDTLTMMSLLRERKHQLTNDISSADVIVINTCTVRMETEEKMKKRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S K LVVAGC+ L S++G Q ++ VV+ VE + R++
Sbjct: 63 LVSTGKKLVVAGCLAGAEPALVTSLAPSASLIGPQSLESVVKAVE-----GDSRVVEIGS 117
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LPKV + ++PI GC G C +C TK AR L SY++ ++ V+ + G
Sbjct: 118 KPPTLLPKVHEG-LIAVIPIADGCAGHCNFCITKLARRILRSYSMRAIKEAVQESVRRGA 176
Query: 239 KEVWLSSEDTGAYGRDIGVNL--PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ L+ +DT AYG D+G + P L+ I + +G M+R+GM P + L EI
Sbjct: 177 KEIELTGQDTAAYGLDLGGLVGLPDLVREISS---VEGDFMIRVGMMTPDLAMRRLDEII 233
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E HP VY F H+PVQSG+D VL M R+YT+ +F+ +V + +P I TD+I G
Sbjct: 234 EAWSHPKVYKFFHIPVQSGNDRVLRLMGRKYTVEEFKALVKEIRSRIPQSNITTDVIVGH 293
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
PGE ++ F T++L++E KF ++HI+ + RP T ++ M +VP V ++R +E S++E
Sbjct: 294 PGEDEDAFKDTLDLMRELKFERIHIAMYSLRPNTRSSMMPQVPGDVKRRRLKEAVSLYEE 353
Query: 417 FT-----PYLGMEGRV 427
+ Y+G E RV
Sbjct: 354 LSLEVHKKYVGREMRV 369
>gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
Length = 433
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 213/383 (55%), Gaps = 20/383 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GC +Q+ SE M + G+ L D + AD+ + NTCTVK ++ + I +
Sbjct: 3 VHVATYGCPSSQAASEIMMDAIKRQGHELVD-EKSADVVVFNTCTVKYTTEQKILHKIGE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE--ETLK-----GHEV 171
+VV+GC+P+ D L + I+GV I R+ EV++ E K G +
Sbjct: 62 LGRKGLEVVVSGCMPEVQHDDILDNNQDAHILGVNSITRINEVLDSIENAKNKNNSGRRL 121
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ + L+ P+ R N+ + I I+ GC C YC + ARG L S+ ++S+V VR
Sbjct: 122 EIFSSRPDDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKSFDIDSIVEDVR 181
Query: 232 TVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+++G +E+W++S+D YG R GV LP LL+ + + +G+ +R+GM NP +
Sbjct: 182 KAVSEGCREIWITSQDNAQYGIDRQNGVLLPQLLDRVAS---IEGNFKIRVGMMNPFSVY 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
L ++ +V + +Y FLH+P+QS S+ VL MNR YT+S+ ++ + +
Sbjct: 239 PILDDLLKVYENNKIYKFLHLPIQSASEKVLGYMNRNYTMSEVDEIITKFRSRFNDLTLV 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
TDII GFPGET++DF ++++ +K Y+ +V+IS++ PRP T A + + S +V +RS E
Sbjct: 299 TDIIVGFPGETEDDFYKSIDWVKNYRPDKVNISRYTPRPHTKALEYRNIDSRIVVRRSNE 358
Query: 410 LTSV-----FEAFTPYLGMEGRV 427
L V E+ +G G+V
Sbjct: 359 LHHVCDTVKLESKKEMVGWHGKV 381
>gi|383319340|ref|YP_005380181.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
gi|379320710|gb|AFC99662.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
Length = 407
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/427 (35%), Positives = 222/427 (51%), Gaps = 30/427 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N DS M + A G + + +EAD+ +INTC V P+ M L A
Sbjct: 3 VYIETYGCTANMGDSHRMRSSIQAAGCCVAERPDEADVIIINTCAVTEPTSRGM--LKAI 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K K ++VAGC+ L E G V G E +K +R +H K
Sbjct: 61 KKYEDKRVIVAGCMAAAQPYLLEGLGGNVECAGAPG-------AEAAMKLLGIRPVHGKP 113
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L I+ I GC+G CTYC + ARG L S S+ V+ + G
Sbjct: 114 L---------LKGKTAIISIAEGCVGKCTYCIVRLARGTLRSAPPASIKKSVKDALEMGA 164
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE++L+++DTGAYG DIG+ LP L++ + L +G +R+GM NP I + L ++ +
Sbjct: 165 KEIFLTAQDTGAYGIDIGIRLPKLMHDM---LGIEGDYRVRLGMMNPFSIADILDDVIRI 221
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ P VY F H+P+QSGSD +L M R YT S + +V L E +P + ++TD I GFP
Sbjct: 222 FQDPHVYKFAHIPIQSGSDRILRLMGRPYTESQYSDMVRRLRECIPDITLSTDYIVGFPE 281
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
ETD DF T+ ++ K +V+I++F PRPGT AA+M +P A+ K+RSR LT + T
Sbjct: 282 ETDGDFEMTMEDLRANKPLKVNITRFSPRPGTVAAKMDDLPMAIKKERSRALTRLHHEIT 341
Query: 419 -PYLGME-GRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVGRWSV 472
Y+ GR + +TE G + Y V++P+ G VKI +
Sbjct: 342 SAYMRSSIGRRLSVLVTEEGKPGSSVARDDSYHMVVIPAALP-PGARLDVKICGASTTYM 400
Query: 473 FGEVIKI 479
G+ I+I
Sbjct: 401 IGKPIEI 407
>gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15]
Length = 525
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/433 (33%), Positives = 222/433 (51%), Gaps = 60/433 (13%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG---------YALTDNSEEADIWLINTCTVKSPSQ 111
+ M T GC HN ++S+ +A L G Y +++++ D+ IN+CTVK+PS+
Sbjct: 26 VMMVTMGCGHNAAESDIIASALQTAGAVIIHSNGKYITPESAKDVDVLYINSCTVKNPSE 85
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQG----SRDLKELEG-----VSIVGVQQ-IDRVVEV 161
+ K +V+ GCVPQ S +L++ +S V QQ + + +
Sbjct: 86 DKAFVHVQKGLEVGTVVVLGGCVPQSYGAMSDELRKASASKQLIISGVLTQQWLTALPGL 145
Query: 162 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 189
+ E + H + H + PAL + P R
Sbjct: 146 LREAIDFHILNTSHVLQ-PALRMTQPSSKAGVSAAISYVTKEATKDVDVEYLKCTPVHRA 204
Query: 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 248
N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSLADPVIRELWLTGEDT 264
Query: 249 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
A+GR+ G LL + L + T ML+IGMT+P I+ +A + VY
Sbjct: 265 LAWGRESGTTFAGLLQEVQKLLETENPTHKMLKIGMTDPDSIINQEDSLASFICCKYVYK 324
Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
FLH+PVQSGSD +L+ M R Y + F L VP + + TDIICGFPGETDED Q
Sbjct: 325 FLHLPVQSGSDRILTLMRRHYDIETFLKSCSKLQSAVPDLCLDTDIICGFPGETDEDHAQ 384
Query: 367 TVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYL 421
++NL + K F V+I+Q+Y R TPAA M++VP++ ++R++E++ V +
Sbjct: 385 SLNLFRNLKEDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTKEMSEVVKNSFRRD 444
Query: 422 GMEGRVERIWITE 434
G+V I + E
Sbjct: 445 QYHGQVHDIMVLE 457
>gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
Length = 415
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 231/426 (54%), Gaps = 22/426 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ +T++ EEA+I +INTC V+ +++ M I +
Sbjct: 3 VYVEGYGCVLNTADTEIIKNSLREHGFEITEDLEEANIAIINTCVVRLETENRMIYRINE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+ K +V+AGC+P+ ++ +++G + ++ R E++++ ++ H +R
Sbjct: 63 LKNLGKEVVIAGCLPKALKE--KVKGFLHIYPREAHRAGEILKDYIEKH-----YRMPYI 115
Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
D+ K K + LPI GC+G C+YC K ARG+L SY E +V + + +
Sbjct: 116 EEDINKTLYKKLDYLTPSLISPLPICEGCIGNCSYCIVKIARGNLISYPREKIVNKAKEL 175
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I G K + ++++DT YG DIG NL LLN + +G ++R+GM + L
Sbjct: 176 INKGAKCLLITAQDTACYGFDIGDNLANLLNDLTQ---IEGEFIMRVGMMHAKNAELILD 232
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ EV + V FLH+P+QSG D +L M R YT+ +F+ +V+ + + TDII
Sbjct: 233 ELIEVYKDDKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 292
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
GFPGET+E F T+ ++KE K +H +++ R GT AA+MK+V + + K+RS L +
Sbjct: 293 VGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKQRSEILDKL 352
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQ--VLVPSTGNMLGTSALVKITSVGRWS 471
+ YL + V + I +G GY +V G +G VKIT +
Sbjct: 353 RRELS-YLNNKKYVGKTMRVLILDEG--KGYTDNFKVVKFEGGEIGEFRKVKITDAKTFG 409
Query: 472 VFGEVI 477
+ GE+I
Sbjct: 410 LRGEII 415
>gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1]
gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1]
Length = 429
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 236/440 (53%), Gaps = 40/440 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+ N+ D M L + G+ L + EAD +INTCTV+ ++ M I +
Sbjct: 5 IYIETYGCALNRGDEYIMKTVLVSRGHKLVEEITEADTIIINTCTVRYDTELKMIKRIKE 64
Query: 121 ----CKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEE-----TLKGH 169
K L++AGC+ Q + K S+V Q ++ VE LKG
Sbjct: 65 LYRIASEQNKKLIIAGCMAKAQPYKIHKIAPKTSLVSPQNAPKIWIAVESDGQVFLLKGE 124
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
R + + +K + LPI GCLG C++C K+AR L SY + +
Sbjct: 125 RNRRILGTYV----------DKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ ++ GV E+ ++ +DT +YG D+ LP LL + G+ M+RIGM NP
Sbjct: 175 VKELVGKGVVEIEITGQDTASYGLDLYGKQMLPNLLEELDG---IKGNFMIRIGMMNPDT 231
Query: 288 ILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L E+ EV+++ +Y FLH+P+QSGSD VL M R+YT+ ++R +V L + +P +
Sbjct: 232 LANILDELIEVIKNSAHIYRFLHIPLQSGSDKVLRIMRRKYTVDEYREIVKILRKKIPEI 291
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATDII G PGE +EDF QT+++IKE KF +VH + + RP T +A ++++P++V K+R
Sbjct: 292 SIATDIIVGHPGEEEEDFEQTLDIIKELKFERVHPAVYSIRPNTYSASLRQIPTSVKKER 351
Query: 407 SRELTSVFEAFTPYLGME------GRVERIWITEIAAD--GIHLGYVQVLVPSTGNM-LG 457
L + E +G+E G+V +ITE + G L Y+ V++ S + G
Sbjct: 352 MLRLLKIIEN----VGLEVHRKYLGKVLDTFITEHSNTWIGRTLNYIPVIIFSENTLDFG 407
Query: 458 TSALVKITSVGRWSVFGEVI 477
++IT+ + + G ++
Sbjct: 408 KHVKIQITNATFYDLRGVIV 427
>gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM
14429]
gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM
14429]
Length = 452
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/438 (33%), Positives = 235/438 (53%), Gaps = 34/438 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DS+ M +L + G+ T++ E AD ++NTC V+ ++ L+ +
Sbjct: 9 TFGCWLNKADSDIMITKLRSLGWEYTEDVESADTIIVNTCAVREEAERNELKLLKRLSEE 68
Query: 125 K--KPLVVAGCV----PQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K L+VAGC+ P +D+ +S G + ID EVV H K
Sbjct: 69 YPGKRLIVAGCLTRIRPATIKDVSPNAMLISSHGAELID---EVVSSNTDVHVYEDRPAK 125
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVI 234
LP P++ +++V +PI VGCLG C++C TK R G + SY ++ +V + +
Sbjct: 126 YLPNY-YPELHGHRYV--VPIQVGCLGNCSFCVTKIGRMGFGRVKSYGIDDIVNAITNAV 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+ G +E++L+ ++ AYGRD G +L LL I+A++ DG M+R+GM P + +
Sbjct: 183 SKGAREIYLTGQEISAYGRDRGYDLADLLEKILAKV--DGRFMVRLGMMEPLELSRIIDR 240
Query: 295 IAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ +V++ VY F HVPVQSGSD VL M R+Y++ FR +V + P +ATDII
Sbjct: 241 LLDVVKSDWRVYRFFHVPVQSGSDRVLMLMRRKYSVDLFRDIVKRIRNAFPDATVATDII 300
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
GFPGETDEDF +V LI+E +V+++++ RP T AA M++VP V K+RS+ T V
Sbjct: 301 VGFPGETDEDFWASVRLIEELGIDKVNLARYSRRPFTEAAYMEQVPEQVKKERSKIATDV 360
Query: 414 F-----EAFTPYLGMEGRVERIW--ITEIAADG---IHLGYVQVLVPSTGNMLGTSALVK 463
F E ++G E +W ++E+ G + Y + +G VK
Sbjct: 361 FNRVALERNKTFIGRE-----MWGIVSEVDFKGENYVVRSYNYKPIAVRKADIGAFVRVK 415
Query: 464 ITSVGRWSVFGEVIKILN 481
+T +FG++++ N
Sbjct: 416 VTDATSQRLFGQLLESEN 433
>gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
Length = 429
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 233/440 (52%), Gaps = 40/440 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ D M L + G+ L + EAD +INTCTV+ ++ M I +
Sbjct: 5 VYIETYGCALNRGDEYIMKTVLVSRGHRLVNEIAEADTIIINTCTVRYDTELKMIKRIKE 64
Query: 121 ----CKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEET-----LKGH 169
K L+VAGC+ Q + K S+V Q ++ VE LKG
Sbjct: 65 LYKIASEQNKKLIVAGCMAKAQPYKIHKIAPRASLVSPQNASKIWIAVESDKQVFLLKGE 124
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
R ++ +K + LPI GCLG C++C K+AR L SY + +
Sbjct: 125 RDR----------NILGTHVDKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V ++ GV E+ L+ +DT +YG D+ LP LL + G+ M+RIGM NP
Sbjct: 175 VEELVGKGVVEIELTGQDTASYGLDLYGKQKLPHLLEELDR---IKGNFMIRIGMMNPDT 231
Query: 288 ILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L E+ E++++ +Y FLH+P+QSGSD VL M R+YT+ ++R ++ TL + +P +
Sbjct: 232 LANILDELVEIIKYSAHIYRFLHIPLQSGSDKVLRVMKRKYTVDEYREIIKTLRKKIPEI 291
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
IATDII G PGE +EDF QT+++IKE KF ++H + + RP T +A +++VP++ K R
Sbjct: 292 SIATDIIVGHPGEEEEDFEQTLSIIKELKFERIHPAVYSIRPNTYSASLRQVPTSDKKIR 351
Query: 407 SRELTSVFEAFTPYLGME------GRVERIWITEIAAD--GIHLGYVQVLVPSTGNM-LG 457
L + E +G+E G++ ++TE + G L Y+ V++ S + G
Sbjct: 352 MLRLLKIIED----VGLEIHRKYLGKILDTFVTEYSNTWIGRTLNYIPVIIFSNNTLNFG 407
Query: 458 TSALVKITSVGRWSVFGEVI 477
+IT+ + + G ++
Sbjct: 408 DHVKTQITNATFYDLRGVIV 427
>gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
Length = 435
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 231/436 (52%), Gaps = 23/436 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L +N+ +A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRV---VEVVEETLK----GH 169
++V+GC+P+ + L I+GV + R+ + +E+ K G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLSTIEQRKKTGIPGG 122
Query: 170 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E RL R P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEII 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+R+ +ADG +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+L L ++ + ++ LH+P+QS S +VL MNR + + ++ +
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVDEIITKFRAHFEDLS 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
+ TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + KRS
Sbjct: 299 LFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVKRS 358
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHL-GYVQVLVPSTGNMLGTSAL 461
+L V E+ +G +GRV TEI Y V++ + G A
Sbjct: 359 HQLHKVCEQIKIESKNEMIGWKGRVFVSKYTEIGDVLTRTDSYRPVVISGSDLRPGEYAE 418
Query: 462 VKITSVGRWSVFGEVI 477
VKIT G+++
Sbjct: 419 VKITGAKPGYFLGKLV 434
>gi|435850791|ref|YP_007312377.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
gi|433661421|gb|AGB48847.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
Length = 433
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 233/434 (53%), Gaps = 21/434 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ TFGCS NQ+ +E M + + G+ L + + AD+ ++NTCTVK ++ + I +
Sbjct: 3 VYVSTFGCSANQASAEVMMATIRSLGHELV-SEKHADVVVLNTCTVKYSTEQKILHKIRE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE---------ETLKGH 169
+VVAGC+P+ + ++ I+GV I R+ EV+ +T
Sbjct: 62 LGEKGIEVVVAGCMPEVQLEDIIRNNPDAHILGVNSISRIGEVLNSIASPNLCSQTTSRQ 121
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + + +++P++R N + I ++ GC AC+YC + RG L S+ +S+V
Sbjct: 122 ALHVFSHEPEGFINVPRLRFNSNIHICQLSQGCNNACSYCIVRFVRGPLRSFHPDSIVED 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+R +A+G +E+WL+S+D YG DIG+ LP LL I ++P G +R+GM NP +L
Sbjct: 182 IRQGVAEGCREIWLTSQDNAQYGIDIGLRLPQLLERI-CDIP--GDFKVRVGMMNPFSVL 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
L+E+ + +Y +H+PVQS S+ VL MNR +++ + V+++ + + +
Sbjct: 239 PILEELLHAFENDKIYKLVHLPVQSASNDVLKRMNRFHSIEEADLVINSFRDRFDDLTLF 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
TDII GFPGE + DF T+ +K+ K +++IS++ PRP T A + + S +V +RS E
Sbjct: 299 TDIIVGFPGENEADFVTTLEWVKKQKPEKINISRYTPRPHTKALEYRNIDSRIVVQRSNE 358
Query: 410 LTSVFEAFTPYL--GMEGRVERIWIT-EIAADGIH---LGYVQVLVPSTGNMLGTSALVK 463
L +V E + M G R++I+ E G+ Y V++P + + G+ V+
Sbjct: 359 LHAVCEEVKTGVRENMMGWQGRVFISKEAKVKGLMARTASYKPVVIPESSAVPGSFCDVE 418
Query: 464 ITSVGRWSVFGEVI 477
I G V+
Sbjct: 419 IFDATPGYFLGRVV 432
>gi|385806199|ref|YP_005842597.1| MiaB family RNA modification protein [Fervidicoccus fontis Kam940]
gi|383796062|gb|AFH43145.1| RNA modification enzyme, MiaB family [Fervidicoccus fontis Kam940]
Length = 425
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 197/361 (54%), Gaps = 14/361 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KTFGC+ N+SDSE M L + G+ DN E AD+ ++NTCTV+ S I K
Sbjct: 3 FFIKTFGCALNRSDSELMREILISRGFEEIDNLENADVIIVNTCTVRKDSDQKAIEYIEK 62
Query: 121 CKSAKK--PLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
K K +VVAGC+P L ++ + +R+V+ + +E L
Sbjct: 63 VKQLNKNSKIVVAGCIPGSQPYLIKSRFPDAVLISPYETNRIVDAI-----FYETDFLGY 117
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
++ ++P V+ + I+P+N GCL C +C TK AR L S + ++ ++ ++ +
Sbjct: 118 EEFKRYNVPIVKTGN-IAIVPLNDGCLSNCNFCITKVARRRLLSRMPKVILKAIKDLVEN 176
Query: 237 GVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
GV E+ LSS+D YG D LP L+ I E+ G MLRI M NP + + L+
Sbjct: 177 GVYEIQLSSQDASVYGIDFKGRPLLPDLVETINQEIK--GEYMLRIAMMNPDGVKKDLEN 234
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
++ + V+ FLH+P+QSG D VL M R+Y++ D VV+ + ++IATDII
Sbjct: 235 FVKIFEYEHVFKFLHLPIQSGDDEVLKIMGRDYSIEDALYVVNEFRSRIKDLRIATDIIV 294
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G PGE++E F T+ ++ F +VHI+Q+ PRP T +ARM ++ +V KKRS L
Sbjct: 295 GHPGESEEAFENTLKVVVSGLFDRVHIAQYTPRPFTLSARMPQISDSVKKKRSSLLKEEL 354
Query: 415 E 415
E
Sbjct: 355 E 355
>gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
Length = 414
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 230/420 (54%), Gaps = 12/420 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ + D + AD+ +INTC V+ +++ M I +
Sbjct: 4 VYVEGYGCVLNSADTEIIKNALREEGFEIVDELDRADVAVINTCVVRLETENRMIYRINE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK-GHEVRLLHRKKL 179
K+ K +VVAGC+P+ ++ +++G + ++ + ++++ +K G V L K
Sbjct: 64 LKNLGKDVVVAGCLPKALKE--KVKGFLHIYPREAHKAGKILKIYIKSGKRVEGLEDDKS 121
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L + + + LPI GCLG CTYC K ARG+L SY E +V + +I G K
Sbjct: 122 LHKKLDYIT-SSLITPLPICEGCLGHCTYCIVKIARGNLISYPREKIVKKAEELIKKGTK 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
++++++DT YG D NL LLN + +G ++R+GM + + E + E+ EV
Sbjct: 181 CIFITAQDTACYGFDRNDNLANLLNDLC---NIEGDFIMRVGMMHAKNVEEIIDELIEVY 237
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ V FLH+P+QSG D +L M R YT+ +F+ +V+ + V + TDII GFPGE
Sbjct: 238 KTDKVGKFLHLPLQSGDDEILKKMRRGYTVDEFKEIVNEFRKKVKNLCFTTDIIVGFPGE 297
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 419
T+E F T+N++KE K +H +++ R GT AA+MK+V + + K+RS L + +
Sbjct: 298 TEEQFENTLNILKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKQRSEILDKLRRELS- 356
Query: 420 YLGMEGRVERIWITEIAADGIHLGYVQ--VLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
Y+ + + + T I +G GY + +V G +G VKI + + G++I
Sbjct: 357 YINNKKYIGKKLKTLILEEG--KGYTENFKVVKFEGGSIGNFKKVKIVDAKTFGLVGKII 414
>gi|188529339|gb|ACD62415.1| CDKAL1-like protein [Drosophila silvestris]
Length = 248
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 144/194 (74%), Gaps = 5/194 (2%)
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+ I
Sbjct: 1 LEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDLLRSRVPGLTI 60
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
ATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+++++P+ +VKKR++
Sbjct: 61 ATDIICGFPTETEQDFEETMTLCEKYQFPILFINQFFPRPGTPAAKIERIPANLVKKRTK 120
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVK 463
LT +F ++ PY EG++ + +TEI+ D +H Y QVL+P N+LGT V+
Sbjct: 121 RLTDLFYSYEPYAEREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVR 180
Query: 464 ITSVGRWSVFGEVI 477
ITS ++S+ GE++
Sbjct: 181 ITSSSKFSMMGEIL 194
>gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
Length = 404
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 224/422 (53%), Gaps = 27/422 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GCS N +++ M GQ A G + EEAD+ LI TC V +++ M I +
Sbjct: 3 VYLEAYGCSQNIAETN-MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEE 58
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K K +VV GC+P ++L +++ V I + E+ E L L R +
Sbjct: 59 LKRYGKKIVVYGCLPSARKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMD 107
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ + V +PI GCLG CTYC T+ ARG + S + E ++ V+ + E
Sbjct: 108 EVFIWDA-----VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVE 162
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ +S++DT AYGRDIG L L+N+I A +P G LR+GM P L L E+ +
Sbjct: 163 IRISAQDTAAYGRDIGTELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYS 219
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
+P VY FLH+PVQSG + +L MNR Y + DF +V + P M ++TDII GFPGE
Sbjct: 220 NPKVYKFLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGEN 279
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--EAFT 418
DE F T+ LIKE K ++I++F PRP TPA + K+ + VK+ S++L ++
Sbjct: 280 DESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMENMHK 339
Query: 419 PYLGMEGRVERIWITEIAADGIHLGYVQVLVPST--GNMLGTSALVKITSVGRWSVFGEV 476
+ M G+ ++ + G +L Q P ++G +++IT + + G++
Sbjct: 340 RFESMLGKEFKVIVPSRGKRGKYLARSQNYEPVVLDNAVIGREYIIRITHYEKSHLVGKI 399
Query: 477 IK 478
++
Sbjct: 400 LE 401
>gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167]
gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis
IC-167]
Length = 422
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 233/432 (53%), Gaps = 25/432 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T Y++T+GC N++DS M L GY ++ +AD+ L+NTC V+ S+ I
Sbjct: 3 TYYIETYGCWLNKADSALMEEDLRRMGYVKVNDPAQADLILVNTCAVREDSEIRELKAIE 62
Query: 120 KCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K L+VAGC+ + S ++ IV ++ + E+++ + E RL+ R
Sbjct: 63 KYSRLGKKLIVAGCLTKARPSEIMRLAPDALIVNPSSVENLAELLKGGVNLTE-RLMVR- 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVI 234
+PK + V ++PI VGCLG C+YC K+ RG +G S + + + +
Sbjct: 121 ------IPKYYESSHVYVVPIQVGCLGNCSYCVIKYTRGGMGWVKSADLSVVKESIAKAV 174
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A G +E++L+ ++ AYG+D G +L LL A++ ++ +G ++R+GM P + +
Sbjct: 175 ARGAREIYLTGQEISAYGKDKGYDLVDLLEAVLRDV--EGRYLIRLGMLEPLELEGMIHR 232
Query: 295 IAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ +V+++ +Y F H+PVQSGSD VL M R+YT+ F+ V+ + IATDII
Sbjct: 233 LIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKRKYTVDLFKREVELIRRSFRNSFIATDII 292
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
G PGE D DF ++V LI+E +VH++++ PRP T AA M++VP V K+RS L+ V
Sbjct: 293 VGHPGEDDSDFQESVRLIRELGIDKVHVARYSPRPFTEAAYMRQVPDQVKKQRSSMLSKV 352
Query: 414 -----FEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITS 466
+ Y+G EG + I + Y V++ + G+ LG+ +K+T
Sbjct: 353 ALEVAYSRNLEYVGGTYEGLISSIGFKGRGLMARLMDYRPVII-NEGD-LGSFVKIKVTG 410
Query: 467 VGRWSVFGEVIK 478
++ G++I+
Sbjct: 411 ASSINLIGKIIE 422
>gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM
2661]
gi|2501543|sp|Q58277.1|AMTAB_METJA RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 427
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 228/426 (53%), Gaps = 22/426 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ + +N EEADI +INTC V+ +++ M I +
Sbjct: 14 VYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRINE 73
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+ K +VVAGC+P+ ++ +++G + ++ + E+++ ++ H +R
Sbjct: 74 LKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH-----YRMPYI 126
Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
D+ K K + LPI GC+G C+YC K ARG L SY E +V + + +
Sbjct: 127 EEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKAKEL 186
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I G K + ++++DT YG DIG NL LLN + G ++R+GM + L
Sbjct: 187 INKGAKCLLITAQDTACYGFDIGDNLANLLNELTQ---IKGEFIMRVGMMHAKNAELILD 243
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ EV ++ V FLH+P+QSG D +L M R YT+ +F+ +V+ + + TDII
Sbjct: 244 ELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 303
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
GFPGET+E F T+ +++E K +H +++ R GT AA+MK++ + + K+RS L +
Sbjct: 304 VGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKMKQIDTKIRKRRSEILDKL 363
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQ--VLVPSTGNMLGTSALVKITSVGRWS 471
+ YL + + + + +G GY +V G +G VKIT +
Sbjct: 364 RRELS-YLNNKKYIGKAMKVLVLDEG--KGYTDNFKVVKFEGGEVGEFRKVKITDAKTFG 420
Query: 472 VFGEVI 477
+ GE+I
Sbjct: 421 LKGELI 426
>gi|452210718|ref|YP_007490832.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
gi|452100620|gb|AGF97560.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
Length = 458
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 217/394 (55%), Gaps = 22/394 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L +N+ +A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASIRKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK----GH 169
++V+GC+P+ + L I+GV + R+ ++ +E+ K G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLFTIEQRKKTGIPGG 122
Query: 170 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E RL R P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+R+ +ADG +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+L L ++ + ++ LH+P+QS S +VL MNR + + ++ +
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVNEIITKFRARFEDLS 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
+ TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + KRS
Sbjct: 299 LFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVKRS 358
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIA 436
+L V E+ +G +GRV TEI
Sbjct: 359 HQLHKVCEQIKIESKNEMIGWKGRVFVSKYTEIG 392
>gi|386001450|ref|YP_005919749.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
gi|357209506|gb|AET64126.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
Length = 430
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 210/375 (56%), Gaps = 33/375 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC+ N+ +SE A L G+ + + EEAD+ ++NTC V ++ + +++
Sbjct: 22 FYIETYGCAANRGNSEAFASALVEAGHRRS-SQEEADLVIVNTCAVTERTERDIRRRLSE 80
Query: 121 CKSAKKPLVVAGC----VPQGSRDLKELEGVSIVGVQQIDRVVEVV--EETLKGHEVRLL 174
+ + L+VAGC +P+ RDL+ E + I+ R+ E E L G
Sbjct: 81 LQGER--LIVAGCLPSAIPEAVRDLRCREVLGILSAPSGRRIGEAFPPEPELAGSG---- 134
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
++ R+ ++ I+ GCLG+C+YC + ARG L S TV+ + VR +
Sbjct: 135 -----------RMTRD-LCAVVNISEGCLGSCSYCIVRRARGPLRSRTVQEVAEEVRRRL 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G EV L+S+D AYG D+G +LP L++A VAE+ +G +R+GM NP + L+E
Sbjct: 183 KEGAVEVQLASQDAAAYGLDLGSSLPELIDA-VAEI--EGDFRIRVGMMNPGQVKPILEE 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ P VY FLH+PVQSGS VL +M R YT DF ++ L PG+ + TD+I
Sbjct: 240 LIRSYDDPKVYKFLHLPVQSGSAEVLRSMRRGYTPQDFLSMAARLRAAFPGLTLYTDVIA 299
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G PGE +EDF T LIK+ + +V+++ + RPGT A+R+K +PS + K RSR +T ++
Sbjct: 300 GHPGEREEDFAATEELIKKAEPDKVNVTMYSSRPGTEASRLKDMPSRLKKDRSRRMTRLW 359
Query: 415 EAFT-----PYLGME 424
+ YLG E
Sbjct: 360 KEIAGRRNGRYLGEE 374
>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
Length = 404
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 201/365 (55%), Gaps = 26/365 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T +Y++T+GC+ N++DS + + A G A+ + EEAD+ ++NTC V + ++M L
Sbjct: 2 TMRVYIETYGCTANEADSAGIRDAVLASGGAIASSPEEADVIVVNTCAVTGHTANSM--L 59
Query: 118 IAKCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
A + K ++VAGC V + R LK E V G + VR L
Sbjct: 60 RAVSRFPGKRVLVAGCLAVAEPGR-LKGYEFVDGPGSLPV---------------VRALG 103
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ L + R ++I GC G C+YC + RG + S +V R IA
Sbjct: 104 LRPEAGLSIAMTGRTATIKIAE---GCNGQCSYCIVRLVRGRIRSTPAPDIVEAARRAIA 160
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G E++L+S+D+GAYG D GV LP L+ +I A LP G+ +RIGM NP I + L ++
Sbjct: 161 EGASELFLTSQDSGAYGLDTGVRLPTLIRSI-ASLP--GNFKVRIGMMNPFSIADILPDM 217
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+VL HP VY F H+PVQSGSD +L M R YT ++ ++ L VPG+ +TD I G
Sbjct: 218 VDVLNHPKVYRFAHIPVQSGSDRILKLMQRPYTEQEYSAIISRLRAGVPGITFSTDYIVG 277
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP ET+ DF T+ ++ + +V+I++F PRPGTPAA M V K+RSR LT++
Sbjct: 278 FPTETEADFRLTLEDLRTNRPLKVNITRFSPRPGTPAAAMPDVLERTKKERSRMLTALHH 337
Query: 416 AFTPY 420
T +
Sbjct: 338 EVTSH 342
>gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I]
gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I]
Length = 423
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 196/358 (54%), Gaps = 9/358 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY +T+GC+ ++E + +L + GY + EEAD +I TCTV+S ++ M I +
Sbjct: 3 IYYETYGCAVMLGEAERVLEELKSKGYEVVGRPEEADASIIFTCTVRSETEQRMAWRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A K L+V GC+ L ++ SIV + + E LKG + LL ++
Sbjct: 63 LCKASKKLIVTGCLASAQPGLVKMVCPRASIVSNSSLHEI----ELALKGEKKYLLKGQR 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P L V F ++PI GCLG CT+C TK AR L S +S++ + G
Sbjct: 119 -PRDWLKGVTPGGFRVVIPIADGCLGNCTFCITKVARPRLVSQRPDSIIEYALKGVKRGA 177
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL++ D AYG++IG+ LP LL ++ LP + +R+GM +P E + +V
Sbjct: 178 KEIWLTAPDVAAYGKEIGLELPDLLEKLLKVLPEN--VYVRVGMMSPDTFREVMDRTIDV 235
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+R P V+ F H+P+QS SD VL M R YT S+F +V+ + + IATD++ GFPG
Sbjct: 236 MRDPRVFKFFHLPLQSASDKVLRLMGRRYTYSEFVEIVNKVRKAFNDPTIATDVMVGFPG 295
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
E ++DF T+ ++E F +VH++ + PRP T ARM +V V +R + +V EA
Sbjct: 296 EEEDDFELTLKALRELAFERVHLAAYTPRPLTLGARMPQVREDVKSRRVKRAMNVIEA 353
>gi|221222491|sp|O29021.2|AMTAB_ARCFU RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 424
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 222/394 (56%), Gaps = 23/394 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC+ NQ+DS+ M G LS G + E+A++ +IN+C V ++ + +
Sbjct: 3 VAIETYGCTTNQADSDIMRGFLS--GEFELSSVEDAEVVIINSCGVIDFTERKIIRRMLD 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHR 176
K K +V+AGC+ + S++ + S + +D VV+ V L G E R + +
Sbjct: 61 LKREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDK 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ L ++R N + I+ I+ GCLG C++C TK ARG L S++++++V +
Sbjct: 120 AEFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRA 177
Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E+ L+S+DTGAYG D G LP LL I +E+ +G +R+GM NP + L E+
Sbjct: 178 GYREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDEL 234
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+Y FLH+PVQSG + +L M R +T+ D+ VV+ + I+TDII G
Sbjct: 235 INAYSSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVG 294
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP ET+E F ++ LIKE + V+I+++ R GTPAAR++ +P + K+RSR+LT +
Sbjct: 295 FPTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAARLRDIPGWIKKERSRKLTDLMR 354
Query: 416 AFTPYLGME------GRVERIWITEIAADGIHLG 443
+G+E G+ R+ +T+ +G +L
Sbjct: 355 K----IGLENNKRFVGKKLRVLVTKEGKNGRNLA 384
>gi|333911554|ref|YP_004485287.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
gi|333752143|gb|AEF97222.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
Length = 413
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 234/428 (54%), Gaps = 30/428 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N +D+ + L +G+ +T N E+AD+ +INTC V+ +++ M I
Sbjct: 3 VYVEGYGCTLNTADTNIIENSLRDYGFEITSNIEDADLVIINTCVVRLETENRMFARINY 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV-------EVVEETLKGHEVRL 173
KS K +VVAGC+ + + K++E ++ + + + + +E++ ++ L
Sbjct: 63 FKSLNKKVVVAGCLAKALK--KKVENLADLLIMPREAHLSGKILYKHFIEKSSIEKDINL 120
Query: 174 LHRKKL--PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ K P+L P LPI+ GC+G C+YC K ARG L SY+ E LV + +
Sbjct: 121 EEKLKYLSPSLITP----------LPISEGCIGNCSYCIVKIARGRLVSYSREKLVEKAK 170
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+I G K + ++++DT YG D NLP L+N + + +G ++RIGM + +
Sbjct: 171 ELINSGTKCLLITAQDTACYGFDRNDNLPNLINDLCS---IEGEFIMRIGMMHAKNVENI 227
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L ++ E + V LH+P+QSG D VL AM REYT+ +F ++V+ + + + TD
Sbjct: 228 LDDLIEAYKDEKVAKLLHLPLQSGDDDVLKAMKREYTVDEFISIVNEFRKKIKDLTFVTD 287
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
II GFP ET+E F T+ ++++ K +H +++ R T AARMK++ + + K+RS L
Sbjct: 288 IIVGFPTETEEAFENTLEVLRKLKPDYIHGAKYTSRKYTEAARMKQIDTKIRKRRSEILD 347
Query: 412 SVFEAFTPYLGME---GRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVG 468
+ + Y+ + G+ R+ +TE GI + +V+ + +GT +KIT
Sbjct: 348 KLRRELS-YMNNKKYIGKKMRVLVTE-EGKGITHNF-KVVRFNKNAEIGTFKEIKITDAK 404
Query: 469 RWSVFGEV 476
+ +FGE+
Sbjct: 405 TFGLFGEL 412
>gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC
50581]
Length = 525
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 140/433 (32%), Positives = 219/433 (50%), Gaps = 60/433 (13%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG---------YALTDNSEEADIWLINTCTVKSPSQ 111
+ M T GC HN ++S+ +A L G Y + +++ D+ I +CTVK+PS+
Sbjct: 26 VMMVTMGCGHNAAESDIIASALQTAGALITHSNGKYITPEGAKDVDVLYITSCTVKNPSE 85
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQG----------SRDLKELEGVSIVGVQQIDRVVEV 161
+ K A +V+ GCVPQ + K+L ++ Q + + +
Sbjct: 86 DKAFVHVQKGLEAGVVVVLGGCVPQSYGAVNDELRRASASKQLIISGVLTQQWLADLPRL 145
Query: 162 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 189
+ E + H + H + PAL + P R
Sbjct: 146 LREAIDLHTLSDSHLLQ-PALRMTQPSDKIGVPAAISYVTKEATKDINVEYLKCTPIHRA 204
Query: 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 248
N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+ +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPVIRELWLTGEDT 264
Query: 249 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
A+GRD G LL I L + T ML+IGMT+P ++ + ++ VY
Sbjct: 265 LAWGRDSGTTFAALLQEIQKLLETENPTHKMLKIGMTDPDSVINQEDSLISFMQCKYVYK 324
Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
FLH+PVQSGSD +L+ M R Y + F L +P + + TDIICGFPGETDED Q
Sbjct: 325 FLHLPVQSGSDRILTLMRRHYDIGTFLASCSKLQSAIPDLCLDTDIICGFPGETDEDHAQ 384
Query: 367 TVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYL 421
++NL + +F V+I+Q+Y R TPAA M++VP++ ++R+RE++ V +
Sbjct: 385 SLNLFRNLSKDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTREMSEVVKGSFRRD 444
Query: 422 GMEGRVERIWITE 434
G+V I + E
Sbjct: 445 QYHGQVHDIMVLE 457
>gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1]
gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1]
Length = 450
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/433 (32%), Positives = 227/433 (52%), Gaps = 30/433 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ T Y++ +GCS ++ D+ MA +L GY E+AD+ L+NTC V+ ++ +
Sbjct: 17 SRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAER 76
Query: 118 IAKCKSA--KKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
+ K + + VVAGC+ + L + + S++ Q ++RV++ V+ G + +
Sbjct: 77 LEKLRLQLPDRKYVVAGCLVKARPGLVARLVPEASLLAPQAVERVLDAVDALESGRRLVV 136
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L ++ +P++ V + I GCLG C++C TK AR + SY+ +V RVR
Sbjct: 137 LDGRR-DTRSMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRVIVERVREA 195
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+ G +E+ L+ D YG D+ NL L+ AI+ ++ +G +R+GM P + +
Sbjct: 196 VEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKV--EGDYRIRVGMMTPDQVEPY 253
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L + +V R VY + H+PVQSG D VL M R YT+S+++ + + P IATD
Sbjct: 254 LDSLLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAIHRRIKSRFPDAMIATD 313
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
II G PGET E F TV L++E +F +VH++Q+ RP T AA M++VP +V K+RSR L
Sbjct: 314 IIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASMEQVPDSVKKERSRILG 373
Query: 412 SV-----FEAFTPYLGMEGR---VERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVK 463
+ E Y+G R ER W E + G Y +++P
Sbjct: 374 KIVAEIGLEINGSYVGRRVRALVTERSW-REGSMTGRLDNYTPIILPYEER--------- 423
Query: 464 ITSVGRWSVFGEV 476
++GRW V+ EV
Sbjct: 424 --AMGRW-VYAEV 433
>gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthetase [Methanosarcina acetivorans C2A]
gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
Length = 435
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 223/435 (51%), Gaps = 21/435 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE--EADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS + + +E M + G+ L + + EA++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVV--------EETLKG 168
++V+GC+P Q L I+GV I R+ E++ E G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEEILHANPEAHILGVNAISRLGELLSSIEQRRMEGLPAG 122
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ L + L L++P+ R N + I I+ GC AC+YC KHARG L S+ E +V
Sbjct: 123 GHLELRTSEPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLRSFPPEKIVK 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R+ +ADG +E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +
Sbjct: 183 DIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLR-MISEIP--GDFKVRVGMMNPFSV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L L + + V+ LH+P+QS S +VL MNR + + ++ + +
Sbjct: 240 LPILDGLVDAFDSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDEIITKFRARFEDLSL 299
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + +RS
Sbjct: 300 FTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVQRSH 359
Query: 409 ELTSVFEAF-----TPYLGMEGRVERIWITEIAADGIHL-GYVQVLVPSTGNMLGTSALV 462
EL V E +G +GRV TEI Y V++ + G A V
Sbjct: 360 ELHKVCEQIKLGSKQEMIGWKGRVFVSKYTEIGDVLTRTDAYRPVVISGSDLKPGEYANV 419
Query: 463 KITSVGRWSVFGEVI 477
+IT G +I
Sbjct: 420 EITGAKPGYFLGRII 434
>gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6]
gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6]
Length = 417
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 206/354 (58%), Gaps = 7/354 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC+ NQ+DS+ + ++S + L+ + E+AD+ +IN+C V ++ + +
Sbjct: 3 VAIETYGCTMNQADSDIIRAEVSR-EFELS-SVEDADVVVINSCGVIDYTERKILNRARQ 60
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ K +V+AGC+P+ + + E+ +I + R+ EV++ + G+++ LL + ++
Sbjct: 61 LRQMGKTVVMAGCLPRIAKKKVMEVANAAI-SPDNVHRIDEVIKAAVSGNKLFLLDKSEI 119
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
K R + I+ I GC G CT+C T+ ARG L S++ + +V ++ + G
Sbjct: 120 DKTRCEKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLRSFSPDGIVEEIKKAVRAGYV 179
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ L+S+DTGAYG DIG NLP LL I A +G +R+GM NP L ++
Sbjct: 180 EIQLTSQDTGAYGHDIGTNLPDLLEKISA---IEGMFRVRVGMMNPRHAYSMLDDLLNAF 236
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+Y FLH+PVQSG + VL M R++ + ++ VV + + I+TDII GFP E
Sbjct: 237 ESEKIYKFLHLPVQSGDEKVLRDMGRDHGVEEYEEVVSAFRKRFDDVMISTDIIVGFPTE 296
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
++E F ++++L++ + V+++++ PR GTPA R++ +P + K RSR +T +
Sbjct: 297 SEEAFYKSLDLVRRTRPDLVNVTRYSPRKGTPAFRLRDMPDWIKKDRSRAVTRL 350
>gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1]
gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1]
Length = 417
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/359 (35%), Positives = 204/359 (56%), Gaps = 14/359 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + + +N EAD+ ++NTC V+ + M + I +
Sbjct: 3 VYFETYGCALNKGDTYIMMTLLKQRNHEIVNNPNEADVIVLNTCDVRLETGERMKSRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ K LVVAGC + + SI+G Q + ++++ VE G ++ ++ ++
Sbjct: 63 LRKFGKKLVVAGCFSGAEPGVVKTLAPEASIIGPQALTKIIDAVE----GEKIFSINAER 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P+V K + I+PI GC G C++C TK AR L SY++ S+V V+ + +G
Sbjct: 119 SEIT--PRVFEGK-IAIIPIADGCAGDCSFCITKLARRTLRSYSMRSIVEAVKEAVKNGA 175
Query: 239 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
EV L+ +D AYG D+G + L LLN + L +G M+RIGM P + I
Sbjct: 176 VEVELTGQDAAAYGLDLGGKIKLSDLLNEV---LSIEGDFMIRIGMMTPEQFARDIDGIL 232
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E +R+P ++ FLH+PVQSG D VL MNR+YT+ +++ +V +P + I TDII G
Sbjct: 233 EAMRNPKLFKFLHLPVQSGDDNVLKLMNRKYTVDEYKELVKEARSKIPNINITTDIIIGH 292
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
PGE + F T+ L+KE KF +VH++ + RP T +A MK+VP +V K+R R ++E
Sbjct: 293 PGEDENAFENTLELMKEIKFERVHLAMYSIRPNTRSALMKQVPDSVKKERMRIAYKLYE 351
>gi|374635310|ref|ZP_09706912.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
gi|373562898|gb|EHP89103.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
Length = 417
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 229/425 (53%), Gaps = 24/425 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++ +GC+ N +D+ + L F + +TDN E+AD+ +INTC V+ +++ M I
Sbjct: 8 IYVEGYGCTLNIADTNIIENSLKEFNFEITDNVEDADLVIINTCVVRLETENRMFARINY 67
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG---HEVRLLHRK 177
KS K +VVAGC+ + + K++E ++ D ++ E L G HE + K
Sbjct: 68 FKSLDKKVVVAGCLAKALK--KKVENLA-------DLLIMPREAHLSGEIIHEHFVEKNK 118
Query: 178 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K ++L + + + LPI GC+G C+YC K ARG L SY+ E +V + +I
Sbjct: 119 KENTINLEEKLKYISPSLITPLPICEGCIGECSYCIVKVARGRLISYSREKIVKKAEELI 178
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G K + ++++DT YG DI NLP L+N + + +G ++RIGM + + + L +
Sbjct: 179 NSGTKCLLITAQDTACYGFDINDNLPNLINDLCS---INGEFIMRIGMMHAKNVGDILDD 235
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E + V LH+P+QSG D VL AM R YT+ +F ++V+ + + + TDII
Sbjct: 236 LIEAYKDEKVAKLLHLPLQSGDDGVLKAMKRGYTVDEFISIVNEFRKKIEDLTFVTDIIV 295
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFP ET+E F T+ ++++ K +H +++ R T AARMK++ + + K+RS L +
Sbjct: 296 GFPTETEEAFENTLEVLRKIKPDYIHGAKYTSRKYTEAARMKQIDTKIRKRRSEILDKLR 355
Query: 415 EAFTPYLGME---GRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWS 471
+ Y+ + G+ ++ ITE GI + V + +G +KIT +
Sbjct: 356 RELS-YMNNKKYVGKKMKVLITE-ENKGITHNFKVVRFNEDAD-IGAFKEIKITDAKTFG 412
Query: 472 VFGEV 476
+FG +
Sbjct: 413 LFGNL 417
>gi|432328224|ref|YP_007246368.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
gi|432134933|gb|AGB04202.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
Length = 386
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 215/407 (52%), Gaps = 53/407 (13%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+AD +I TC V +++ M I + + K +VV GC+P R+L E +G+ +
Sbjct: 14 EDADKIVIGTCVVIEHTENRMLRRIKELRRYGKDIVVYGCLPSARRELLE-DGLIPITTW 72
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
+ +R HE +L +K P + +V V +PI GCLG CTYC TK
Sbjct: 73 EFER----------AHE--MLDLRKSP---MDQVFLWDAVATIPIANGCLGKCTYCITKI 117
Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
ARGH+ S VE ++ RV+ + G E+ LS++DT AYGRDIG NL L+N I + D
Sbjct: 118 ARGHIKSRPVEWIISRVKDALNMGAVEIRLSAQDTAAYGRDIGTNLAELVNLITS---LD 174
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
G +RIGM P LE + E+ E + VY FLH+PVQSG D +L MNR YT DF
Sbjct: 175 GRFYVRIGMMEPRETLEIIDELIESYKSSKVYKFLHIPVQSGDDRILRRMNRGYTAEDFE 234
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
++ + +P + I+TD+I GFPGETDE F T+++I+ K ++I++F PRP TPA
Sbjct: 235 RIIGEFRKKIPDITISTDVIVGFPGETDETFANTLDMIQRLKPDILNITRFSPRPKTPAY 294
Query: 394 RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS-- 451
K+ + VK+ S+ +T + ME R++ E+ +V+VPS
Sbjct: 295 GWKRPSTNKVKEWSQRVTDLH-----LRNMEERMKSYVDREM----------EVVVPSRG 339
Query: 452 -TGNMLGTSA----------------LVKITSVGRWSVFGEVIKILN 481
GN L S+ L+KI+ + + G++++ LN
Sbjct: 340 KRGNFLARSSNYLPIVVKDAEIGGFYLLKISGFEKAHLKGKIVERLN 386
>gi|389860714|ref|YP_006362954.1| MiaB family RNA modification protein [Thermogladius cellulolyticus
1633]
gi|388525618|gb|AFK50816.1| RNA modification enzyme, MiaB family [Thermogladius cellulolyticus
1633]
Length = 425
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 199/363 (54%), Gaps = 16/363 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M L+ G+ + D+ AD +INTCTV+ ++ M IA+
Sbjct: 3 VYLETYGCALNKSDEALMKRVLTDRGHGIVDDPTSADALVINTCTVRLDTEYRMARRIAE 62
Query: 121 ----CKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K + K LVVAGC+ Q + K SIV Q D++ VE R++
Sbjct: 63 LYRLAKESGKKLVVAGCLAKAQPYKVAKLAPDASIVSPQNADKIYLAVESN-----SRVV 117
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
L + V + +P GCLG CT+C KHAR L S+ +E + V +
Sbjct: 118 LLTGLRSRGSIGVFLTGRIAPIPAQEGCLGNCTFCIVKHARRVLVSHPIEDVKKAVEEAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G E+ L+ D G YG D+ LP L+ + VAE+ +G M+R+GM NP + L
Sbjct: 178 RLGAVEIELTGMDLGTYGIDLYKTRKLPELIES-VAEV--EGDFMVRVGMLNPEHLSYIL 234
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ E L+H VY FLH+P+QSGS+ +L M R+YT+ ++ V+ L +PG+ IATDI
Sbjct: 235 DDLVEALQHRKVYKFLHIPLQSGSNRILKLMGRKYTVEEYIDYVEELKSKIPGISIATDI 294
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
+ GFP ETDEDF TV +IK+ +F +VH++ + RP T A + ++P+ K R +
Sbjct: 295 LVGFPHETDEDFQDTVEVIKKLRFERVHLAAYSIRPRTLATSLPQIPTQTKKSRVLQALR 354
Query: 413 VFE 415
V E
Sbjct: 355 VIE 357
>gi|449066971|ref|YP_007434053.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
gi|449035479|gb|AGE70905.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
Length = 402
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 217/410 (52%), Gaps = 19/410 (4%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQ 136
M L G+ + DN ++A+I +INTC V+ ++ M I + K K LVVAGC+
Sbjct: 1 MMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLAS 60
Query: 137 GSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVE 194
+ S++G Q + ++V+VVE + K +V L K L PKV K +
Sbjct: 61 AEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IA 115
Query: 195 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
ILPI GC G C +C TK AR L SY +V VR + G E+ LS +DT AYG D
Sbjct: 116 ILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLD 175
Query: 255 IGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+G I L+ +V ++ +G M+RIGM P + + I EVLR VY F+H+PVQ
Sbjct: 176 LG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQ 232
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
SG D VL MNR+YT+ +++ +V + + VP + I TDII G PGE + F T+ L+++
Sbjct: 233 SGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRD 292
Query: 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIW 431
KF ++H++ + RP T +A MK+VP V K+R + ++E A+ + + +
Sbjct: 293 IKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEELAYEIHSDYLNSIASVI 352
Query: 432 ITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
TE G +G Y+ V++ LG V+I + + GE I
Sbjct: 353 TTEYGRKGSVIGRTLNYIPVVIRQNVE-LGKRINVRINEASFYDLRGEPI 401
>gi|449069243|ref|YP_007436324.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
gi|449037751|gb|AGE73176.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
Length = 401
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 215/402 (53%), Gaps = 19/402 (4%)
Query: 86 GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQGSRDL--K 142
G+ + DN ++A+I +INTC V+ ++ M I + K K LVVAGC+ +
Sbjct: 8 GHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLASAEPAVVVS 67
Query: 143 ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGC 202
S++G Q + ++V+VVE + K +V L K L PKV K + ILPI GC
Sbjct: 68 LAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IAILPIADGC 122
Query: 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL 262
G C +C TK AR L SY +V VR + G E+ LS +DT AYG D+G I
Sbjct: 123 AGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLDLG---QIK 179
Query: 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L+ +V ++ +G M+RIGM P + + I EVLR VY F+H+PVQSG D VL
Sbjct: 180 LSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQSGDDNVLK 239
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
MNR+YT+ +++ +V + + VP + I TDII G PGE + F T+ L+++ KF ++H+
Sbjct: 240 LMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRDIKFERIHL 299
Query: 382 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADG 439
+ + RP T +A MK+VP V K+R + ++E A+ + + + TE G
Sbjct: 300 AMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEELAYEIHSDYLNSIASVITTEYGRKG 359
Query: 440 IHLG----YVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
+G Y+ V++ LG V+I + + GE I
Sbjct: 360 SVIGRTLNYIPVVIRQNVE-LGKRINVRINEASFYDLRGEPI 400
>gi|325967748|ref|YP_004243940.1| MiaB family RNA modification protein [Vulcanisaeta moutnovskia
768-28]
gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
768-28]
Length = 452
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 210/375 (56%), Gaps = 22/375 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DS+ + +L + G+ T++ + AD +INTC V+ ++ L+ K
Sbjct: 9 TFGCWLNKADSDIVITRLRSLGWEYTEDIKSADTIIINTCAVREEAERNELKLLRKLSEE 68
Query: 125 --KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR----KK 178
K L+V GC+ + + ++ + V E ++E + G ++ K
Sbjct: 69 YLNKRLIVTGCLTRVRPAM--IKDAAPNAVLVTSHGAEFIDEVVNGRNDIYVYEDRPMKY 126
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIA 235
LP+ P+ +++V +PI VGCLG C++C TK R G + SY + + V ++
Sbjct: 127 LPSY-YPEFHGHRYV--VPIQVGCLGNCSFCVTKVGRMGFGKVRSYEMSDITNAVANAVS 183
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E++L+ ++ AYGRD G +L LL I+ ++ DG M+R+GM P + + +
Sbjct: 184 RGAREIYLTGQEISAYGRDRGYDLADLLENILGKV--DGRFMIRLGMMEPLELSRVIDRL 241
Query: 296 AEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
++++ VY F H+PVQSGSD +L+ M R+Y++S F+ +V + + P I TDII
Sbjct: 242 LDIVKSDWRVYRFFHIPVQSGSDRILTLMKRKYSVSLFKDIVTRIRRVFPDATIVTDIIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFPGETDEDF +V LI+E +V+++++ RP T AA M++VP + K+RS+ T +F
Sbjct: 302 GFPGETDEDFWASVRLIEELSIDKVNLARYSRRPFTEAAYMEQVPEQIKKERSKVATEIF 361
Query: 415 -----EAFTPYLGME 424
E P++G E
Sbjct: 362 NKVALERNKPFIGKE 376
>gi|188996756|ref|YP_001931007.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium sp. YO3AOP1]
gi|229891027|sp|B2V930.1|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 437
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 236/438 (53%), Gaps = 27/438 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N +DSE MAG L GY T+N EEAD+ L+NTC+V+ + + + +
Sbjct: 3 FYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALGE 62
Query: 121 CKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-V 171
K KK + V GC+ Q G ++ + IV G I + ++EE G++ +
Sbjct: 63 FKKVKKHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKSGNKAI 122
Query: 172 RLLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 123 EILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILR 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ ++ DGVKE+ L ++ AYG+D G V LL A VAE+ DG +R +P
Sbjct: 183 EVQYLVEDGVKEIHLIGQNVTAYGKDFGDVKFWELLKA-VAEV--DGVERIRFTTGHPRD 239
Query: 288 ILEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ E +K +A++ P + LH+P+Q+GSD +L AM+R YT ++ ++ L + +P +
Sbjct: 240 LDEDTIKVMADL---PQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNI 296
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKK 405
++TDII GFPGET ED+ +TV +IKE ++ QV ++ PRPGTPAA + S + K
Sbjct: 297 ALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPEELSK 356
Query: 406 RSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLGYVQV--LVPSTGN--MLGTS 459
R +L ++ + F L + ++ I + EI + +G + LV + G+ LG
Sbjct: 357 RLNDLINLQKDITFKKNLEYQDKIVEILVEEINQENKLVGRTRTNKLVYAEGSPEYLGKL 416
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI V R+S+ G +I
Sbjct: 417 VNVKIEKVNRFSLEGSII 434
>gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5]
Length = 430
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 203/386 (52%), Gaps = 28/386 (7%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
GT ++++TFGC+ N D+ M L G+ + + SE ADI ++NTCTV ++ +
Sbjct: 9 GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K K +VVAGC+ +L + SI+G D V V ++ E +
Sbjct: 68 RLNELKERGKAVVVAGCMAAAQPELVK----SILG----DGVAMVTPRDIQASEKQ---- 115
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
LD V + ++ I GC+G CTYC K ARG L SY E + V++ +
Sbjct: 116 ----RLDFDGV-----IAVITIAQGCIGKCTYCIVKQARGKLKSYKSEKICEAVKSAVES 166
Query: 237 GVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+
Sbjct: 167 GANEIRITSQDSSAYGWSSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
E ++ F HVPVQSGSD VL M R Y ++DF +V + I+TD I G
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVLREMKRNYKVADFVEIVTNIRARFRQSTISTDFIIG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP ET+EDF ++NL++E K +V+I++F PRPGT A+++ + K+RSR ++V+
Sbjct: 284 FPTETEEDFFASLNLMEEIKPEKVNITRFSPRPGTEASKLTDLLEREKKRRSRIFSTVYH 343
Query: 416 --AFTPYLGMEGRVERIWITEIAADG 439
F +EG + +TE G
Sbjct: 344 NIVFAKNKELEGAELPVLVTETGKKG 369
>gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/405 (34%), Positives = 213/405 (52%), Gaps = 26/405 (6%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
M GQ A G + EEAD+ LI TC V +++ M I + K K +VV GC+P
Sbjct: 1 MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIKELKQYGKKIVVYGCLPSA 57
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
++L +++ V I + E+ E L L R + + + V +P
Sbjct: 58 RKELLDMDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
I GCLG CTYC T+ ARG + S + + ++ V+ + G E+ +S++DT AYGRDIG
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQGAVEIRISAQDTAAYGRDIGT 161
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
L L+N+I A +P G LR+GM P L L E+ + +P VY FLH+PVQSG D
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDD 218
Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
+L MNR Y + DF +V + P M ++TDII GFPGE DE F T+ LIKE K
Sbjct: 219 EILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPE 278
Query: 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEI 435
++I++F PRP TPA + K+ + VK S++LT++ + M G+ ++ +
Sbjct: 279 ILNITRFSPRPKTPAYKWKRPSTNKVKGWSQKLTALHMENMHKRFESMLGKEFKVIVPSR 338
Query: 436 AADGIHLGYVQVLVPST--GNMLGTSALVKITSVGRWSVFGEVIK 478
G +L Q P ++G +++IT + + G++++
Sbjct: 339 GKRGKYLARSQNYEPVVLDNAVIGREYIIRITHYEKSHLVGKILE 383
>gi|397780037|ref|YP_006544510.1| methylthiotransferase [Methanoculleus bourgensis MS2]
gi|396938539|emb|CCJ35794.1| Putative methylthiotransferase AF_1247 [Methanoculleus bourgensis
MS2]
Length = 448
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 221/428 (51%), Gaps = 39/428 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ +Y++++GC++N +D+ + L G LT +EAD +INTCTV ++ M +
Sbjct: 42 KKVYIESYGCTYNHADARRLEAILEGLGCRLT-GPDEADAVIINTCTVIGATERKMLRRL 100
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A A + L V GC+P R+L + V V D + HE +
Sbjct: 101 AAF--ADRDLYVTGCMPLVQREL--INSVCTAHVIHPDEI----------HE-------R 139
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+ P + ++ + GC+G C+YC T+ ARG L S E ++ VR ++ G
Sbjct: 140 ASGVGSPGA---GAIGVVQVASGCVGRCSYCITRLARGRLKSAPPEEILDAVRRLVRSGA 196
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+ +D A+G D G LP LL AI E+P G +R+GM +P +L L + +
Sbjct: 197 FEIQLTGQDVAAWGLDRGEALPDLLQAIT-EIP--GRFAVRLGMMHPAPVLRILDPLIDA 253
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
++ FLH+PVQSGSDAVL M R Y +D +VD E P M I++D I GFPG
Sbjct: 254 YASEKMFRFLHLPVQSGSDAVLERMQRGYRAADVIRIVDAFRERYPDMMISSDFITGFPG 313
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----VF 414
ETDE+F QT++L++ F +V+I+++ RPGTPAA +K +P + K RSR L + ++
Sbjct: 314 ETDEEFRQTLDLLRRAAFVKVNITRYSRRPGTPAAALKDLPERIRKDRSRALLAEANRIY 373
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL----GYVQVLVPSTGNMLGTSALVKITSVGRW 470
+ + GR I TE A G + Y+ V++ LG S IT R
Sbjct: 374 DRYNER--WMGRETSIVATEKNAPGSTVCRNPCYLNVVI-KEDLPLGFSGRAVITRNRRH 430
Query: 471 SVFGEVIK 478
V GE+++
Sbjct: 431 YVIGELVQ 438
>gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728]
gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum]
Length = 401
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 202/387 (52%), Gaps = 30/387 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY + +GC+ NQ ++ +L + G L +EADI +I TC V ++ M I +
Sbjct: 3 IYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRIEE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVG--VQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ V+ GC L ++G I G ++ IDR E + E
Sbjct: 63 LSRLGRVKVI-GC-------LSAIKGSEISGGNIEAIDR-----NEFQQFQEY------- 102
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L+ + + + +PIN GC G C +C + ARG L S E +V ++R ++A G
Sbjct: 103 ---LEDTSIIDAEIMSGIPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMMVAAGK 159
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+ +SS DT AYG+D G LP L+ I A DG MLR+GM P +E L ++ E
Sbjct: 160 REIRISSLDTAAYGKDTGYRLPSLIKDITA---VDGDFMLRVGMMEPRNTIEILDDLLEA 216
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
P V+ FLH+PVQSG D VL+AMNREYT+ +F ++++ + P M I+TD+I G+
Sbjct: 217 YDDPKVFKFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESFRKRFPDMTISTDVIIGYHA 276
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
E D F+ T +LI++ + +++++F PR TP + P+ V+K + R + +
Sbjct: 277 ENDRSFDLTCDLIRKVQPEIINVTRFSPRELTPDFEHRPRPTNVLKDQDRTMAEIHRKIV 336
Query: 419 P--YLGMEGRVERIWITEIAADGIHLG 443
+ + G+VERI ITE G +G
Sbjct: 337 SERFSALVGKVERILITEDGKPGTMVG 363
>gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM
6242]
gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains
[Methanococcoides burtonii DSM 6242]
Length = 430
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 127/358 (35%), Positives = 196/358 (54%), Gaps = 12/358 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GCS NQ+ SE M + GY L D + A++ +INTCTVK ++ + I
Sbjct: 3 VHITTYGCSANQASSEIMIASVRDLGYELVDEMD-AEVVVINTCTVKYTTEQKILHKIED 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK---GHEVR 172
+ +VV GC+PQ + L+ I+GV I ++ +V +E + K V
Sbjct: 62 LGAKGIDVVVTGCMPQVQLETILERNPDAHILGVNSIAKIGQVLRSIENSCKVGSRERVE 121
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L+ + L R N + I I+ GC +C YC ARG L S+ +S+V +R
Sbjct: 122 LITSEPEGFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSFDADSIVEDIRM 181
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ +G +E+WL+S+D G YG D V LP LL IVA +P G +R+GM NP + L
Sbjct: 182 AVDEGCREIWLTSQDNGQYGTDRDVLLPELLRRIVA-IP--GDFKIRVGMMNPFSVTPIL 238
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ EV R +Y +H+P+QS SD VL MNR +++ + +V L E P + + TDI
Sbjct: 239 DDLIEVFRSDKIYKIVHLPIQSASDNVLKKMNRYHSIEEANGIVFRLREAFPDLTLFTDI 298
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
I GF E+D DFN T+ +K K +V+IS++ PRP T A + + + +V +RS +L
Sbjct: 299 IVGFSSESDNDFNMTLEWVKTMKPDKVNISRYTPRPLTKALEYRNLDTRIVVERSNKL 356
>gi|448407296|ref|ZP_21573684.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
gi|445675632|gb|ELZ28161.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
Length = 418
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 225/432 (52%), Gaps = 34/432 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M A+
Sbjct: 5 HIETYGCTANRGESRQIERSLRDGGHHPADGPEEADVAILNTCTVVEKTERNM-LRRAEE 63
Query: 122 KSAKKP--LVVAGC--VPQGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
A+ P LVV GC + QG +E + V D V E V + E
Sbjct: 64 LDAETPADLVVTGCMALAQG----EEFAAADLDAEVLHWDEVPEYV----RNGECPTTTP 115
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P LD V ILPI GC+ C+YC TKHA G + S +VE + + R ++
Sbjct: 116 DTEPVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENLEKARALVHA 168
Query: 237 GVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E+ ++ +DTG YG D G L +LL+ I E+ +G +R+GM NP + +E+
Sbjct: 169 GAREIRITGQDTGVYGWDEGERKLHVLLDRICTEI--EGEFRVRVGMANPKGVHGIREEL 226
Query: 296 AEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
AEV H +Y+FLH PVQSGSD VL M R++ +S++ VV+T + + ++TD I
Sbjct: 227 AEVFAAHDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYVEVVETFDDYLDEWTLSTDFIV 286
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
GFP ETD DF Q++ L++E + ++++++F RPGT AA MK + V K+RS+ ++ +
Sbjct: 287 GFPTETDRDFEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELK 346
Query: 415 EAFTP--YLGMEGRVERIWITEIAAD----GIHLGYVQVLVPSTGNM---LGTSALVKIT 465
Y M G V + +TE D G Y QV +P N LG + ++T
Sbjct: 347 MDVMDEVYESMVGDVRSVLLTEDGTDDSLVGYDRAYRQVAIPDAQNQGVELGDTVDAEVT 406
Query: 466 SVGRWSVFGEVI 477
GE++
Sbjct: 407 GHNTVYALGELV 418
>gi|296242700|ref|YP_003650187.1| MiaB family RNA modification protein [Thermosphaera aggregans DSM
11486]
gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
11486]
Length = 427
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 26/379 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M L G+ + DN AD+ +INTCTV+ ++ M I+
Sbjct: 3 VYVETYGCALNRSDEALMKHVLIERGHTIVDNPSNADVVIINTCTVRLDTEQHMLNRISS 62
Query: 121 CK----SAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K L+VAGC+P Q + K S+V Q R+ VE G V L
Sbjct: 63 LRELTQARKGKLIVAGCLPAAQPYKVAKTAPEASLVSPQNSSRIYVAVES--DGRVVMLD 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
++ + L NK I PI GCL C++C TKHAR L S+TVE++V V T +
Sbjct: 121 GVRERDRIGL--CFENKVAPI-PIQEGCLSNCSFCITKHARRVLVSHTVEAIVKSVETAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP---PFIL 289
G E+ L+ D G YG ++ LP L+ V+ LP G +RIGM NP P IL
Sbjct: 178 RMGAVEIQLTGMDLGTYGMELYGKRYLPELVRR-VSTLP--GEFRVRIGMINPEHLPPIL 234
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E + R +Y FLH+P+QSGSD VL AMNR+YT+ ++R ++ + + + + IA
Sbjct: 235 DELLEAVKSDRR--IYRFLHIPLQSGSDKVLKAMNRKYTVDEYRGLIKEVKQKISDVSIA 292
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS-R 408
TDII G P E +EDF +T+ +I+E +F +VH + + RP T +A M +P+ + K+R R
Sbjct: 293 TDIIVGHPLEDEEDFEETLKIIRELEFERVHFAGYSVRPNTLSAGMPNIPTRIRKERMLR 352
Query: 409 ELTSV----FEAFTPYLGM 423
L +V F+ Y+G+
Sbjct: 353 MLETVEEVGFKVREKYIGL 371
>gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
Length = 411
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/353 (35%), Positives = 203/353 (57%), Gaps = 18/353 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC+ N +S + G L A G+ +D + +++ ++NTC V S ++ M I + K
Sbjct: 5 IETYGCTSNTGNSMELRGALIAHGHQESD-LDGSEVVILNTCAVTSRTERNMLRRIGELK 63
Query: 123 SAKKPLVVAGCVPQGSRDLKE-LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L+VAGC+P +L E +E V ++ IDRV++ + + H L LP
Sbjct: 64 GRR--LIVAGCLPAAIPELIESVECVGVLNRWGIDRVLDALGRS--EHPTSELSASCLPG 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
++ I+ GCLGAC YC K ARG L S + V +I+ G E+
Sbjct: 120 ---------SLCGVVNISEGCLGACAYCIVKRARGTLRSREPHEIEKDVMRLISSGAVEI 170
Query: 242 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301
L+S+D GAYG DIG +LP LL+ +++++ DG+ M+R+GM NP +L+ L ++ + ++
Sbjct: 171 QLTSQDAGAYGCDIGASLPELLD-LLSDI--DGAFMIRVGMMNPNSVLKILDDLLDSYKN 227
Query: 302 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 361
+Y F+H+P+QSGSD VL M R YT DF VV P + + TD+I GFPGE+D
Sbjct: 228 EKIYRFIHLPLQSGSDRVLERMRRGYTSDDFVNVVSAFRSRYPEISLTTDVITGFPGESD 287
Query: 362 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
+DF T ++I+ + +V++++F RP T A M +P + K+RSR +T ++
Sbjct: 288 QDFRMTEDVIRITQPDKVNVTRFSRRPHTLAFMMHDMPDRIKKERSRRVTELW 340
>gi|171186225|ref|YP_001795144.1| RNA modification protein [Pyrobaculum neutrophilum V24Sta]
gi|170935437|gb|ACB40698.1| RNA modification enzyme, MiaB family [Pyrobaculum neutrophilum
V24Sta]
Length = 415
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 147/435 (33%), Positives = 233/435 (53%), Gaps = 40/435 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC ++D+E + +L G D+ EEAD+ L+ TC V+ + I +
Sbjct: 4 IYVETYGCWLAKADAEVVRQRL---GLERADSPEEADLVLVYTCAVREDGEVRQLARIRE 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ +VVAGC+ + L+ S ++ + ++G R + R
Sbjct: 61 LAGLGRRMVVAGCLAR----LRPYTVKSAAPGAEL-----LYPSQVEGGREREMRR---- 107
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
LP+ V + P+ VGCLG CT+C TK+ RG G S + + +V VR +A G
Sbjct: 108 ---LPRYE-GGVVYVAPLQVGCLGNCTFCATKYTRGGAGYVRSASPDDVVAHVREAVARG 163
Query: 238 VKEVWLSSEDTGAYGRDIGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+EV+L+ +D YG D G NLP LL I+ E+ +G +RIGM+ P +
Sbjct: 164 AREVYLTGQDVITYGFDAGWRGGWNLPDLLERILREV--EGDYRVRIGMSEPWVFAKFAD 221
Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ +V+ R VY + H+PVQSGSD VL AM R YT+ ++R +V + + IATDI
Sbjct: 222 QLLDVVKRDGRVYRYFHLPVQSGSDRVLRAMGRRYTVGEYRELVRKIRRELGDAFIATDI 281
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
I GFPGE +E+F ++V L++E KF +VH+++F PRP T AA M ++VP A K+RS+ L+
Sbjct: 282 IVGFPGEAEEEFVESVKLVEELKFDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 341
Query: 412 SVFEAFTPYLGME--GRVERIWITEIAADGIHLG----YVQVLVP--STGNMLGTSALVK 463
V E GR E + + E+ G+ +G Y QV+V + ++G V+
Sbjct: 342 EVAARVALLRNGERVGRREVVLVDEV-DHGLVVGRASDYRQVVVKRGAGDELMGRFVDVR 400
Query: 464 ITSVGRWSVFGEVIK 478
I G ++GE+++
Sbjct: 401 IAGAGPVYLYGEILE 415
>gi|448592731|ref|ZP_21651778.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
gi|445730757|gb|ELZ82344.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
Length = 431
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 140/432 (32%), Positives = 227/432 (52%), Gaps = 33/432 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 10 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 69
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ D EGV I+ + V E G V
Sbjct: 70 EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 122
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 123 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 175
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 176 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 233
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+H +Y+F+H PVQSGSD VL M R++ + FR +V+T E + ++TD I G+P
Sbjct: 234 FAKHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYP 293
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETDED ++++L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 294 TETDEDHERSMDLLREIRPEKVNVTRFSKRPGTDAANLKGLGGTIKKERSKEMSEAKMDI 353
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIH---LGYVQVLVPST---GNMLGTSALVKITS 466
V EA+ +G E V + + E D + Y Q++V + G G V++T+
Sbjct: 354 VAEAYEEMVGTEQEV--LVVQEGTGDSVKCRDAAYRQIIVQNASEHGLEPGDFTHVEVTA 411
Query: 467 VGRWSVFGEVIK 478
FGE ++
Sbjct: 412 HQTVYAFGEPVE 423
>gi|305663521|ref|YP_003859809.1| MiaB family RNA modification protein [Ignisphaera aggregans DSM
17230]
gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
17230]
Length = 426
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 225/426 (52%), Gaps = 16/426 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+ N++D+ + L + D+ EAD+ ++NTC V+ ++ M + +
Sbjct: 3 IYIETYGCALNRADTNIIKTLLIEKKIEIVDSPREADVIILNTCVVRYDTEVRMLKRLEE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K ++V+GC+ +R L ++ V+ V + + + E + + + +
Sbjct: 63 LSKTGKKIIVSGCM---ARALPIKIRSVNPKAVLLPPQSIHRIYEAINADDGYIFFDEIK 119
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+PK+ + +P+ GCL C++C K AR HL S +E++V V+ VI+ G
Sbjct: 120 TFTVMPKII-DGVKATIPVAEGCLDECSFCIVKIARPHLKSIPIENIVNAVKEVISMGAI 178
Query: 240 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
E+ ++++D YG DI LP LL +I+ D ++RIG NP ++ +L
Sbjct: 179 EIEITAQDLSVYGYDIYGEYALPKLLESILEIERED--FVIRIGQLNPRHLVNYLDRFIA 236
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+LR P VY +H+PVQSG++ VL AMNR++ + F ++ L + + G+QIATDII G P
Sbjct: 237 ILRDPRVYKHVHIPVQSGNNRVLEAMNRKHGVELFLDIISELRKKIEGIQIATDIIVGHP 296
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
GE +E F +V LI E +VHI+++ PRP T ++ MK++P + K RS + ++E
Sbjct: 297 GEDEEAFMDSVKLITENYIDRVHIARYSPRPLTRSSLMKQIPDPIKKSRSSYIEKIYEVV 356
Query: 418 TPYLGME--GRVERIWITEI-----AADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRW 470
+ E G + +WITEI A G Y V++ LG A V+I +
Sbjct: 357 AYEVNREYIGSIAEVWITEIDSRRNIAIGRLFNYRPVVLDRGPEALGRKAFVEIRDATFY 416
Query: 471 SVFGEV 476
+ G V
Sbjct: 417 DLRGIV 422
>gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
Length = 430
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 219/424 (51%), Gaps = 36/424 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC +N D+ + L +G + E+AD ++NTCTV P++ M ++
Sbjct: 25 VYIETYGCRYNFGDTANLVAVLKHYGSTVVPAPEDADAVVVNTCTVVGPTERRMLRRLSA 84
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ +KPL V GC+P R+ + + V + +T++ L+
Sbjct: 85 LQ--EKPLFVTGCMPLVQRE----------AILAVCSPVIIHPDTIREASRALMTVG--- 129
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
++ V I+ I GCLG CTYC T+ ARG L S+ V+ + ++ + G E
Sbjct: 130 ---------SESVGIVQIAQGCLGRCTYCITRRARGPLRSFPVQEIRNKIEEYVRAGAYE 180
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+++DT A+GRD G LP LL A+ + +P G+ LR+GM NP L L ++ +
Sbjct: 181 IQLTAQDTSAWGRDTGQRLPDLLTAL-SSIP--GNFRLRVGMMNPATTLGILDDLIDAFA 237
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
++ F+H+PVQSGSD +L M R YT+ +F +V P + IATD I GFPGET
Sbjct: 238 SDRLFRFVHLPVQSGSDRILEQMGRGYTVREFEEIVSAFRGRYPDISIATDFIVGFPGET 297
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 420
+EDF++++ LI + +V+++++ PRP T K P AV K RSR L + E Y
Sbjct: 298 EEDFSRSLELIGRIRPAKVNVTRYSPRPFTGPFEEKDFPDAVKKDRSRILNAYAEE--QY 355
Query: 421 LGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNM-------LGTSALVKITSVGRWSVF 473
+ + + + + + I G V S + +GT+A+V++ ++
Sbjct: 356 VALNRPLLGTMVFCVVTEKIRPGSVMARTASYQGLVIGEELSVGTAAVVRLKKDRKYFFM 415
Query: 474 GEVI 477
G+++
Sbjct: 416 GDLL 419
>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
marina EX-H1]
gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
EX-H1]
Length = 438
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 240/440 (54%), Gaps = 28/440 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
Y++TFGC N +DS+ MAG L GY + E+ADI L+NTC+V+ P Q + L
Sbjct: 5 YIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSALGEF 64
Query: 119 AKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
K K+ K V V GC+ Q G L++ V +V G I + +++EE L+G++ V
Sbjct: 65 KKIKNKKPDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEALQGNKAVE 124
Query: 173 LLHRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L +L P VR N++ + + GC CTYC + RG S + ++
Sbjct: 125 ILEDIDQNETELDKYPTVRENRYTAYVTVMRGCDKKCTYCIVPYTRGKERSRRIGEILQE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ +I DGVKE+ L ++ AYG+D+G V LL A VA++ +G +R +P +
Sbjct: 185 VQWLIDDGVKEIHLIGQNVTAYGKDLGDVRFVDLLYA-VADV--EGVERIRFTTGHPRDL 241
Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E +K +AE+ P + LH+P+Q+GSD +L AM R YT ++ ++ L + +P +
Sbjct: 242 DEETIKAMAEI---PQICEHLHLPIQAGSDRILKAMERGYTQKEYLEKIELLKKYIPDIS 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR--MKKVPSAVVKK 405
++TDII GFPGET ED+ +T+ ++KE ++ QV ++ PRPGTPAA+ M + P + K
Sbjct: 299 LSTDIIVGFPGETYEDYMETIKVLKEVEYDQVFAFKYSPRPGTPAAQMPMTEDPKTLSKW 358
Query: 406 RSRELTSVFE-AFTPYLGMEGRVERIWITEIAADGIHLGYVQ----VLVPSTGNMLGTSA 460
+ + E F L EG+ + + E +G +G + V + N+LG
Sbjct: 359 LNDLILMQKEITFKKNLQYEGKTVEV-LVEEEKEGRFVGRTRTNKLVHIEGRNNLLGEIV 417
Query: 461 LVKITSVGRWSVFGEVIKIL 480
VK+T V R+S+ GE I+ L
Sbjct: 418 DVKVTKVNRFSLEGEAIEQL 437
>gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z]
gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z]
Length = 416
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 142/439 (32%), Positives = 223/439 (50%), Gaps = 61/439 (13%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
++Y +T+GC++N D+E + G ++EEAD LINTC V ++ M +
Sbjct: 16 SLYTETYGCTYNAGDTEKLMEIARNQGCVPASSAEEADAILINTCVVIDKTEQHMYERLD 75
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A K L V GC+P + D+ R +
Sbjct: 76 L--YAGKLLFVTGCLPPVAADVL---------------------------------RTRY 100
Query: 180 PALDL--PKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
P + + P + + ++E+ L I GC G CTYC T+ ARG L S++ E +V
Sbjct: 101 PKIHIIDPALIHSCYMEVGTAHVGTNAVLQIARGCNGHCTYCITRLARGKLVSFSAEDIV 160
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ ++++ G E+ L+++DT ++G R+ G+ LP LL + A +P G+ M+RIGM NP
Sbjct: 161 RQAKSIVEAGATEIQLTAQDTSSWGLDRNDGLRLPDLLRQLCA-IP--GNFMIRIGMANP 217
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+L L + + L+ P ++ FLH+PVQSGSD+VL M R YT + + + + P
Sbjct: 218 DTLLPILDDFLDALKDPKIFLFLHIPVQSGSDSVLRLMGRRYTSAQYEEICQRARKAFPE 277
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
++I+TD I GF GETDED ++ I+ + +V+I++F RP TPAA+MKK+P + K+
Sbjct: 278 IRISTDYIAGFSGETDEDAAKSAEQIRRTRPGKVNITRFSVRPNTPAAKMKKIPEPIKKQ 337
Query: 406 RSRELTS----VFEAFTPYLGMEGRVERIWITEIAADGIHLGY---VQVLVPSTGNMLGT 458
RSRELT V++A + G + +TE+ G Q +V +GT
Sbjct: 338 RSRELTDAANEVYDANNE--ALIGHIMTAVVTEVVKAGSVTARDRTYQNIVIMENLEIGT 395
Query: 459 SALVKITSVGRWSVFGEVI 477
VKIT R + GE I
Sbjct: 396 EITVKITGHRRHYLIGERI 414
>gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184]
gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM
4184]
Length = 415
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 146/435 (33%), Positives = 238/435 (54%), Gaps = 41/435 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC ++D+E + +L GY N +EAD+ L+ TC V+ + I +
Sbjct: 4 IYVETYGCWLAKADAEILRQRL---GYEQVSNVDEADVILVYTCAVREDGEVRQLARIRE 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K L+VAGC L L +I + +++ E ++G + R +
Sbjct: 61 LVKLGKELIVAGC-------LARLRPYTIKSLAPHAKLIYPSE--IEGGKERSMK----- 106
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
LPK R + +P+ VGCLG CT+C TK+ RG G S + +V ++ +A G
Sbjct: 107 --TLPKYERG-LIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPDDVVRHIKEAVAKG 163
Query: 238 VKEVWLSSEDTGAYGRDIGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+E++L+ +D YG D G LP LL+ I+ E+ +G +RIGM+ P + +
Sbjct: 164 AREIYLTGQDVITYGFDAGWRGGWTLPDLLDRILKEV--EGEYRVRIGMSEPWIFEKFVD 221
Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIATD 351
++ +++ R VY + H+PVQSGSD VL AM R+YT+ ++R ++ + EL + IATD
Sbjct: 222 QLLDIIKRDHRVYRYFHLPVQSGSDKVLVAMGRKYTVEEYRGLIRRIRRELGDNVFIATD 281
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
II GFPGET+EDF +TV L++E +F ++H+++F PRP T AA M ++VP A K+RS+ L
Sbjct: 282 IIVGFPGETEEDFQETVKLVEELQFDKIHVARFSPRPFTEAAVMPRQVPDAEKKRRSKIL 341
Query: 411 TSVFE--AFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVP--STGNMLGTSALV 462
+ V A G+ + + I E+ G+ +G Y QV+V + +LG V
Sbjct: 342 SEVAMRIAHLRNGAQVGKRDVVLIDEV-DHGLVVGRASDYRQVVVKRGAGDGLLGEFVNV 400
Query: 463 KITSVGRWSVFGEVI 477
+I + ++GE++
Sbjct: 401 RIAAASPVYLYGEIL 415
>gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
Length = 442
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 212/392 (54%), Gaps = 20/392 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L + +++A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASVERLGHKLLGPEAADQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVV----EETLKG---- 168
++V+GC+P+ + L I+GV I R+ E++ + +KG
Sbjct: 63 RSMGEKNVEVIVSGCMPEVQLEDILHANPEAHILGVNAISRLGELLSLIEQRKMKGLPGG 122
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + + L++P+ R N + I I+ GC AC+YC K+ARG L S+ +V
Sbjct: 123 EHLEFRASEPVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGKLHSFPPNDIVE 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R +A G +E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +
Sbjct: 183 DIRAAVAGGCREIWLTSQDDSQYGMDTGVRLPELLR-MISEIP--GDFKVRVGMMNPFSV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L L ++ + V+ LH+P+QS S +VL MNR + + ++ + +
Sbjct: 240 LPILDDLVDAFDSDKVFKLLHLPIQSASHSVLKRMNRLHKMDVVDMIITKFRARFEDLSL 299
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
TDII GF ETD++F +TV +++Y+ +V+IS++ PRP T A + + S ++ +RS
Sbjct: 300 FTDIIVGFCDETDDEFEETVEWVQKYRPEKVNISRYSPRPHTKAFSFRNLDSRILVQRSH 359
Query: 409 ELTSVFEAF-----TPYLGMEGRVERIWITEI 435
EL V E +G +GRV TEI
Sbjct: 360 ELHKVCEQIKLGSKQAMIGWKGRVFVSKYTEI 391
>gi|296133939|ref|YP_003641186.1| MiaB family RNA modification protein [Thermincola potens JR]
gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
Length = 445
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 146/438 (33%), Positives = 219/438 (50%), Gaps = 30/438 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ ++E +A GY + + S++AD+++INTCTV +I +
Sbjct: 4 VAFHTLGCKVNQYETEALASLFRRQGYQVVEFSDKADVYVINTCTVTHLGDRKSRQMIRR 63
Query: 121 CKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEE--------TLKG 168
K +VA GC Q S ++ +EGV +V G +VVE VE+ L
Sbjct: 64 AKRNNPDAIVAVMGCYAQTSPGEVTAIEGVDLVIGTSDRSKVVECVEDFKRQDTPVNLVK 123
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ ++LP LD R L I GC CTYC +ARG + S ++++
Sbjct: 124 DIMQAREFEELPVLDYESRTR----AFLKIQEGCNNFCTYCIIPYARGPVRSRKRDNVIT 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
++ +G +E+ L+ GAYGRD L A+VA+L G LR+G P
Sbjct: 180 EAERLVGEGFREIVLTGIHIGAYGRDRDDGYD--LAALVADLARIKGLRRLRLGSVEPED 237
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ HL IA + + + LH+P+QSG DAVL MNR+Y +F +V+++ +V +
Sbjct: 238 VTPHL--IATMADNRVICRHLHLPLQSGDDAVLEKMNRKYNTHEFTRLVNSIRAMVDDIA 295
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
I TDII GFPGETDE F+ T N +K F ++H+ ++ PR GTPAA +VP+ ++R
Sbjct: 296 ITTDIIVGFPGETDEQFDNTYNYVKALGFSRLHVFKYSPRKGTPAANFPGQVPAETKEER 355
Query: 407 SRELTSV-----FEAFTPYLGMEGRV---ERIWITEIAADGIHLGYVQVLVPSTGNMLGT 458
S L + E +LG E V +R+ +G+ Y+ V P + G
Sbjct: 356 SSRLIELGKEMGREFARRFLGREMEVLVEQRLEADLHYMEGLTDNYLAVAFPGGNELKGE 415
Query: 459 SALVKITSVGRWSVFGEV 476
VK+TSV VFGEV
Sbjct: 416 FVTVKLTSVKEEHVFGEV 433
>gi|448578250|ref|ZP_21643685.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
gi|445726791|gb|ELZ78407.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
Length = 426
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 140/432 (32%), Positives = 226/432 (52%), Gaps = 33/432 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ D EGV I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+H +Y+F+H PVQSGSD VL M R++ + FR +V+T E + ++TD I G+P
Sbjct: 229 FAKHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 289 TETDEDHERSMALLREIRPEKVNVTRFSKRPGTDAADLKGLGGTIKKERSKEMSEAKMDI 348
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIH---LGYVQVLVPST---GNMLGTSALVKITS 466
V EA+ +G E V + + E D + Y Q++V + G G V++T+
Sbjct: 349 VAEAYEEMVGTEQEV--LVVQEGTGDSVKCRDAAYRQIIVQNASEHGLEPGDFTRVEVTA 406
Query: 467 VGRWSVFGEVIK 478
FGE ++
Sbjct: 407 HQTVYAFGEPVE 418
>gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2]
gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho
motif-related TRAM [Methanococcus maripaludis S2]
Length = 425
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/362 (33%), Positives = 200/362 (55%), Gaps = 13/362 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D++ + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 63 YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDFSEKNNESTQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L KL + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAILKQVDTKIRKERSEILN 358
Query: 412 SV 413
+
Sbjct: 359 EL 360
>gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
Length = 437
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 226/437 (51%), Gaps = 25/437 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T Y++T+GC+ ++ DSE M L GY + EAD+ ++NTC V+ +++ +
Sbjct: 8 TTKYYIETYGCALSEFDSEIMRSILRGAGYEECKDPREADVIIVNTCAVRLDTEAKIVKR 67
Query: 118 IAKCKSAK---KPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+ + K LVV+GC+ + S L+ S+V Q + R+++ V TL
Sbjct: 68 LKELNGLSLQGKKLVVSGCLSKARPSLILRTAPAASLVSPQNVTRILDAV--TLDRPIYM 125
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L + + L P R + V + I+ GCL C++C+TK AR +L SY ++V VR
Sbjct: 126 LDGERDVNFLPKPPTRDS--VATVMISEGCLENCSFCETKLARRYLKSYPPRAIVSIVRD 183
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G +E+ L+ +D AYG D+ LP L+ I+ ++P G LRIGM P +E
Sbjct: 184 LVQGGAREIRLTGQDAAAYGVDLPGKPRLPDLIADILDKVP--GEYRLRIGMMTPNQAME 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ ++ +V R V+ F H+PVQSG D VL MNR YT+++F+ + + P AT
Sbjct: 242 IIDDLLDVYRDGRVFKFFHIPVQSGDDRVLKIMNRRYTVAEFKELHSKVKAKYPSSLFAT 301
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 410
DII G PGE + F +V L++E KF +V+++Q+ RP T +A M +VP V K+RS +
Sbjct: 302 DIIVGHPGEDEGAFMNSVRLVEELKFERVYLAQYSIRPRTASASMPQVPEPVKKERSLRI 361
Query: 411 TSVF-----EAFTPYLGMEGRVERIWITEIAADGIHL----GYVQVLVP-STGNMLGTSA 460
V E + Y+G GR + + +G Y V VP ST G
Sbjct: 362 QEVIKKIGVEIYGSYVG--GRFRGLLASRGFREGFSTVRLDNYFPVAVPASTLRSYGEFV 419
Query: 461 LVKITSVGRWSVFGEVI 477
VKIT + + G ++
Sbjct: 420 DVKITGATYFDLRGVIV 436
>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 437
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 231/436 (52%), Gaps = 27/436 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
Y++TFGC N +DSE MAG L GY + +EAD+ L+NTC+V+ P Q + L
Sbjct: 4 YIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALGEF 63
Query: 119 AKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
K K K + V GC+ Q G L++ + +V G I + +++EE G++ V
Sbjct: 64 KKIKKDKPNAIIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKSGNKAVE 123
Query: 173 LLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 124 ILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGKERSRRIGDILRE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ ++ DGVKE+ L ++ AYG+D+G V LL A VA +P G +R +P +
Sbjct: 184 VQFLVEDGVKEIHLIGQNVTAYGKDLGDVKFWELLQA-VASVP--GVERIRFTTGHPRDL 240
Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E +K +A++ P V LH+P+Q+GSD VL AM+R YT ++ +D L + +P +
Sbjct: 241 DEDTIKVMADL---PQVCEALHLPIQAGSDKVLQAMDRGYTQKEYLQKIDLLKKYIPDIA 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKKR 406
++TDII GFPGET ED+ +TV +IKE ++ QV ++ PRPGTPAA + S + K
Sbjct: 298 LSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADIPMTESPETISKW 357
Query: 407 SRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLGYVQ----VLVPSTGNMLGTSA 460
+L ++ + F L EG+ + I E+ +G G + V V +G
Sbjct: 358 LNDLINIQKDITFKKNLSYEGKTVEVLIEEVNEEGKLTGRTRTNKLVHVDGPQEYVGYIV 417
Query: 461 LVKITSVGRWSVFGEV 476
VKI V R+S+ G +
Sbjct: 418 NVKIEKVNRFSLEGRI 433
>gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [methanocaldococcus infernus
ME]
gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
ME]
Length = 411
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 211/379 (55%), Gaps = 26/379 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N++D+E + L G+ +T++ +EA+I +INTC V+ +++ M I
Sbjct: 3 VYVEGYGCVLNKADTEIIKESLIKEGFEITESLDEANIVIINTCVVRLETENKMMHRINY 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEVRL 173
S K ++VAGC+P+ ++ ++EG + ++ R E++++ L +G E L
Sbjct: 63 LNSLGKLVIVAGCLPKALKE--KVEGFYHIYPKEAHRAGEILKDILTKKKKEDRGEEKEL 120
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
KKL L + K V LPI+ GCLG C+YC K ARG L SY E LV + +
Sbjct: 121 Y--KKLNYL------KPKLVTPLPISEGCLGNCSYCIVKIARGKLISYPREFLVRKAEEL 172
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+ G K + ++++DT YG D G NL LL + +G ++R+GM + ++ L
Sbjct: 173 VKGGAKCLLITAQDTACYGLDRGDNLANLLKDLCQ---IEGEFIMRVGMMHAKYLSPILD 229
Query: 294 EIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
EI E+ R + FLH+P+QSG D +L M R Y++ +F ++V V + TD+
Sbjct: 230 EIIELYREEEKIGKFLHLPLQSGDDEILKLMGRGYSVDEFISIVKEFKRKVKDLCFTTDV 289
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
I GFPGET+E FN T+ ++++ K +H +++ R GT AARMK++ + + K+R+ L
Sbjct: 290 IVGFPGETEEAFNNTLEVLRKLKPDYIHGAKYTQRKGTEAARMKQLDTKIRKRRTEILDK 349
Query: 413 VFEAFT-----PYLGMEGR 426
+ + Y+G E R
Sbjct: 350 LRRELSYLNNKKYVGREMR 368
>gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM
2162]
gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM
2162]
Length = 428
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 215/393 (54%), Gaps = 34/393 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M ++ G+ L ++ +AD +INTCTV+ ++ M I +
Sbjct: 3 VYIETYGCALNRSDEALMRESITGKGHVLVNDPGDADAIIINTCTVRLDTEYHMVKRIRE 62
Query: 121 ----CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
A K L+VAGC+ + + G S++ Q RVVEV+E R++
Sbjct: 63 LYKLSMEAGKKLIVAGCMARAQPYTVSRIAPGASLLSPQNSPRVVEVLEAP-----GRVV 117
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ A D V V +P+ GCL C++C ++HAR L S++++++V V +
Sbjct: 118 MINGVRARDRIGVYVENRVAPIPVQEGCLSNCSFCISRHARRVLVSHSIDAVVKAVGKAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
DG EV L+ D G YG D+ LP L+ IV + G+ MLR+GM NP EHL
Sbjct: 178 RDGAVEVQLTGMDLGTYGMDLYRARRLPDLIRRIVENV--RGNYMLRVGMINP----EHL 231
Query: 293 KEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ I E V VY FLH+P+QSGS+ VL M R YT+ ++ +VD + +P +
Sbjct: 232 RHILEDLVKVVADAENVYKFLHIPLQSGSNRVLKLMRRNYTVEEYLEMVDRVKSSIPEVS 291
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
IATDII G P E++EDF +T+ +I+E F +VH++ + RP T +A M+++P++V K+R
Sbjct: 292 IATDIIVGHPMESEEDFAETLRVIEEAGFERVHLAGYSMRPLTCSAAMQQLPTSVRKERV 351
Query: 408 RELTSVFEAFTPYLGMEGRVE------RIWITE 434
+ V E +GM R R +ITE
Sbjct: 352 LKALRVVEK----VGMRVRARYVGTSVRCFITE 380
>gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 212/405 (52%), Gaps = 26/405 (6%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
M GQ A G + EEAD+ LI TC V +++ M I + K K +VV GC+P
Sbjct: 1 MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEELKRYGKKIVVYGCLPSA 57
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
++L +++ V I + E+ E L L R + + + V +P
Sbjct: 58 RKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
I GCLG CTYC T+ ARG + S + E ++ V+ + E+ +S++DT AYGRDIG
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVEIRISAQDTAAYGRDIGT 161
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
L L+N+I A +P G LR+GM P L L E+ + +P VY FLH+PVQSG +
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDN 218
Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
+L MNR Y + DF +V + P M ++TDII GFPGE DE F T+ LIKE K
Sbjct: 219 EILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPE 278
Query: 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEI 435
++I++F PRP TPA + K+ + VK+ S++L ++ + M G+ ++ +
Sbjct: 279 ILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMENMHKRFESMLGKEFKVIVPSR 338
Query: 436 AADGIHLGYVQVLVPST--GNMLGTSALVKITSVGRWSVFGEVIK 478
G +L Q P ++G +++IT + + G++++
Sbjct: 339 GKRGKYLARSQNYEPVVLDNAVIGREYIIRITHYEKSHLVGKILE 383
>gi|336121828|ref|YP_004576603.1| MiaB-like tRNA modifying protein [Methanothermococcus okinawensis
IH1]
gi|334856349|gb|AEH06825.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
IH1]
Length = 428
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 223/434 (51%), Gaps = 27/434 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+ + + F + + N E+AD+ +INTC V+ ++ M + I
Sbjct: 4 IYIEGYGCTLNAADTIIIKNSIVTFKDFQIVQNPEDADVVIINTCAVRLETEHKMISRIK 63
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-TLKGH-------EV 171
KS K +VVAGC+P+ R+ E G ++ ++ ++V + T H
Sbjct: 64 HFKSLNKKVVVAGCMPKALREKVEDIGDVLIMPKEAHLSGKIVHDYTTYNHCNIGGNNNS 123
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ KL L P N + LPI+ GC+G CTYC K ARG L SY L+ +
Sbjct: 124 NVDIDDKLKYL-TPTNPENSLIMPLPISEGCIGKCTYCIVKVARGRLISYNRNLLIKKAE 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
I GVK + ++S+DT YG D LP L+N I + DG +RIGM + + +
Sbjct: 183 EFINKGVKHILITSQDTACYGFDKNDTLPNLINDIAS---IDGEFDMRIGMMHAKNVTQI 239
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ E+ ++ V FLH+P+QSG D VL M R YT+ +F +V+ V + TD
Sbjct: 240 MDELIASYQNDKVSKFLHLPIQSGDDKVLKDMKRGYTVDEFIDIVNEFKRKVKDLNFNTD 299
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS---- 407
+I GFP E +E+F T+ ++K+ +H +++ R T AA++K+V + V KKRS
Sbjct: 300 VIVGFPTEKEENFENTLEVLKKLNPDYIHGAKYTQRRHTEAAKLKQVDTKVRKKRSEILD 359
Query: 408 ---RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNM-LGTSALVK 463
REL+ ++ Y+ G+ ++ ITE GI V S N+ +G +K
Sbjct: 360 KLRRELS--YKNNKNYI---GKTLKVLITE-NNKGIAHNCKVVKFNSDKNIKIGEFRKIK 413
Query: 464 ITSVGRWSVFGEVI 477
IT + +FGE++
Sbjct: 414 ITDAKTFGLFGEIL 427
>gi|429217568|ref|YP_007175558.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
gi|429134097|gb|AFZ71109.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
Length = 447
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 225/433 (51%), Gaps = 21/433 (4%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++TFGC+ ++ DS M LS GY T+ +ADI ++NTC V+ +++ + + +
Sbjct: 17 YIETFGCALSEFDSSTMDSILSQNGYVKTEYPNDADIIIVNTCAVRLDTEAKIMKRLNEI 76
Query: 122 KS--AKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-R 176
K+ L+V+GC+ + + + S+V Q ++++VV+ ++V L+
Sbjct: 77 KNYYGNARLIVSGCLAKARPSFISRVVPNASLVSPQNSTKILDVVKSE---NKVVLIEGN 133
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ + P + + V + I GC+ C++C TK AR L SY ++ ++ ++
Sbjct: 134 RDTDFMPTPPIEDS--VATIMIEEGCVDNCSFCITKLARQTLKSYKPRVILDTIKKLVEK 191
Query: 237 GVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
GVKE+ L+ +D AYG D L L+N I+ ++ G +RIGM P +E +
Sbjct: 192 GVKEIRLTGQDIAAYGLDFNPKFRLDELINIILDKIK--GEYRIRIGMMTPDKSIEIIDN 249
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E+ + ++ F H+PVQSG + +L MNR Y++ +++ + + + P ATDII
Sbjct: 250 LLELYKDERIFKFFHIPVQSGDNNMLKIMNRNYSIEEYKYLHNKIKSKYPNSLFATDIIV 309
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 414
G PGE +E F TV L+KE +F +V+++Q+ RP T AA M++VP + KKRS L V
Sbjct: 310 GHPGENEEAFQNTVKLVKELRFERVYLAQYSIRPRTKAASMEQVPEVIKKKRSLMLNKVI 369
Query: 415 EAFTP--YLGMEGRVERIWIT-----EIAADGIHLGYVQVLVPSTGNMLGTSALVKITSV 467
+ Y G+ + IT E G Y V + ++G ALV+I
Sbjct: 370 KEIEEEIYKNYIGKTYEVLITTHGFRENYVVGRLNNYFPVAIKGGDELIGKMALVRINKA 429
Query: 468 GRWSVFGEVIKIL 480
+ + GEVI+ L
Sbjct: 430 TYFDLRGEVIEEL 442
>gi|410670393|ref|YP_006922764.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
gi|409169521|gb|AFV23396.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
Length = 440
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 209/385 (54%), Gaps = 22/385 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ TFGCS +Q+ +E M + G+AL S+ AD+ +INTCTVK ++ + +I +
Sbjct: 3 VHVATFGCSASQASAEIMRAIVRDKGHALVPLSD-ADVLVINTCTVKYATEQKILHIIRE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ K ++V GC+P+ + +++ I+GV + RV E+++ K + R +
Sbjct: 62 AADSGKEVIVTGCMPEVQLEDIMEQNPQAHILGVNSVSRVGELLDSLGKTGKGGAKGRMQ 121
Query: 179 L------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +P++R N + I ++ GC +C+YC ARG L S+ E ++ +R
Sbjct: 122 IFLHQPEGFQSVPRIRYNPNIHICQLSQGCNYSCSYCIVSVARGKLRSFGPEEIIADIRR 181
Query: 233 VIADGVKEVWLSSEDTGAYGRD-----IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+++G +E+WL+S+D G YG D + LP LL I +P G +R+GM NP
Sbjct: 182 AVSEGCREIWLTSQDNGQYGTDRRGTGKDILLPELLRMICT-IP--GQFRVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+L L ++ + + VY LH+P+QS SD VL MNR +++ + V+ +
Sbjct: 239 VLPVLYDLLDAFDNEKVYKLLHLPIQSASDGVLRNMNRYHSIQEANHVIRQFRNKFDDLT 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
+ TDII GFPGET+EDF ++V ++E++ +V+IS++ PRP T A S ++ +RS
Sbjct: 299 LFTDIIVGFPGETEEDFKKSVKWVEEFRPDKVNISRYTPRPRTKAWDFHNSDSRILTRRS 358
Query: 408 RELTSV-----FEAFTPYLGMEGRV 427
EL + F +G EG V
Sbjct: 359 NELHRICRSTKFATKNKLIGWEGNV 383
>gi|340623599|ref|YP_004742052.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
gi|339903867|gb|AEK19309.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
Length = 425
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 200/362 (55%), Gaps = 13/362 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D++ + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 63 YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDCSEKNNESTQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L KL + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNSDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ E + V FLH+P+QSG + VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDNQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILN 358
Query: 412 SV 413
+
Sbjct: 359 EL 360
>gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
Length = 438
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 225/436 (51%), Gaps = 25/436 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ + T GC NQ +S MA L G+++ ADI++INTCTV S + + LI
Sbjct: 7 QTVAITTLGCKINQFESAAMAETLGKEGFSIVPFDGAADIYVINTCTVTSKTDAESRRLI 66
Query: 119 AKCKSAKKP---LVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
+ S + P +VV GC Q +L+++ GV+ I+G + + E++++ G R+
Sbjct: 67 RRA-SRQNPSAKIVVTGCYAQVAFEELQDMPGVNLILGNSEKKGIAEMLKDL--GENQRV 123
Query: 174 LHRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
L L+ R F E L + GC C+YC +ARG S ++E +
Sbjct: 124 LVSDISRELNERGTRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSLEEALAG 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+RT G KEV L+ GAYG D+ ++L LLNA E + +RIG P
Sbjct: 184 IRTFAERGFKEVVLTGIHLGAYGLDLNPPLSLLDLLNAAEKERLVE---RIRIGSVEPTE 240
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + L I+ + + V LH+P+QSG D VL AMNR Y+ +DFR+V++ L +P +
Sbjct: 241 VSDAL--ISFLAKSATVCPHLHIPLQSGHDRVLKAMNRNYSTADFRSVMEKLDTDLPSIC 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
I TDII GFPGETD++F ++ H+ F PR GTPAA M+ V S+V+K+R
Sbjct: 299 IGTDIITGFPGETDDEFQDGYRFLESLPLAYFHVFPFSPRSGTPAATMEGHVHSSVIKER 358
Query: 407 SRELTSVFE--AFTPYLGMEGRVERIWITEIAAD---GIHLGYVQVLVPSTGNMLGTSAL 461
++ L + E + Y G ++ + D G+ Y+ V + ++L T L
Sbjct: 359 AKALRKLSEEKKKSFYRSFIGEKLQVLVQTREGDLLKGLSRNYIPVFMEGDDDLLKTEQL 418
Query: 462 VKITSVGRWSVFGEVI 477
V+IT V R V GEVI
Sbjct: 419 VRITGVEREKVTGEVI 434
>gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5]
gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5]
Length = 425
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 209/378 (55%), Gaps = 22/378 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEV 171
KS K +VVAGC+ + + +K L V +V ++ +++++ L G
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKTLADV-LVMPREAQYSGKILKDNLLKGCSEKNGKSN 121
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L+ + + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 122 ENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSKKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS---- 407
+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAILKQVDTKIRKERSEILN 358
Query: 408 ---RELTSVFEAFTPYLG 422
REL+ +E T ++G
Sbjct: 359 ELRRELS--YENNTRHIG 374
>gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7]
gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7]
Length = 425
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 197/362 (54%), Gaps = 13/362 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + L DN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEEFELADNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + + +K L V I+ G+ D +++ E +
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKDNLLKECSEKYNEYNQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L L + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDNLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D NL L++ I +E+P + +RIGM + F
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNKDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V+D + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLDEFKSKIKNLNFTTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILN 358
Query: 412 SV 413
+
Sbjct: 359 EL 360
>gi|389848049|ref|YP_006350288.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|448618147|ref|ZP_21666492.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|388245355|gb|AFK20301.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|445747702|gb|ELZ99157.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
Length = 430
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 226/432 (52%), Gaps = 33/432 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++N+CTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNSCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ QG +E I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFREEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
H +Y+F+H PVQSGSD VL M R++ + F+ +V+T E + ++TD I G+P
Sbjct: 229 FAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETDED ++++L++E ++++++F RPGT AA +K + + K+RS+E++
Sbjct: 289 TETDEDHAKSMDLLREVHPEKINVTRFSKRPGTDAADLKGLGGTIKKERSKEMSETKMDI 348
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V A+ +G E V + + E D + Y Q++V + G G A VK+T+
Sbjct: 349 VAAAYEDMVGTEHDV--LVVEEGTGDSVKCRDEAYRQIIVQNASEHGLEPGDFARVKVTA 406
Query: 467 VGRWSVFGEVIK 478
FGE+++
Sbjct: 407 HQTVYAFGELVE 418
>gi|354610327|ref|ZP_09028283.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
gi|353195147|gb|EHB60649.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
Length = 417
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 217/435 (49%), Gaps = 41/435 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDAADVAILNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-----TLKGHEVRLLHR 176
+S L+V GC+ + E V V D V E V T G E
Sbjct: 65 ESETADLIVTGCMALAQGEEFRAENVD-AQVLHWDEVPEAVTNGECPTTTPGAE------ 117
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P LD + ILPI GC+ C+YC TK A G + S VE V + R ++
Sbjct: 118 ---PVLD-------GVIGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHA 167
Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+
Sbjct: 168 GAKEIRITGQDTGVYGWDNGDRKLPELLDRIATEI--DGDFRVRVGMANPGGVHGIREEL 225
Query: 296 AEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
AEV H +Y+FLH PVQSGSD VL M R++ + + +V+T + + ++TD I
Sbjct: 226 AEVFAEHDEIYNFLHAPVQSGSDDVLEDMRRQHEVEQYVDIVETFDDYLEEWTLSTDFIV 285
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 412
GFP ETD D Q++ L++E + ++++++F RPGT AA MK + K RS+ ++
Sbjct: 286 GFPTETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKAMSDLK 345
Query: 413 ---VFEAFTPYLGMEGRVERIWITEIA-ADGIHL---GYVQVLV---PSTGNMLGTSALV 462
V EA +G E R+ +TE D + Y QV+V P G G A V
Sbjct: 346 MDVVAEAHEEMVGTE---RRVLVTEQGTGDSVKCYDDSYRQVIVQNAPEYGLEPGDFATV 402
Query: 463 KITSVGRWSVFGEVI 477
+I FGE I
Sbjct: 403 EIVGHQTVYAFGEPI 417
>gi|257387570|ref|YP_003177343.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
12286]
gi|257169877|gb|ACV47636.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
12286]
Length = 420
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 145/433 (33%), Positives = 224/433 (51%), Gaps = 34/433 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +++ + L G+ D EEAD+ ++NTCTV ++ M A+
Sbjct: 5 HIETYGCTSNRGETQEIEQALREGGHYPADGPEEADVAILNTCTVLEKTERNM-LRRAEE 63
Query: 122 KSAKKP--LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV--RLLHRK 177
A+ P LVV GC+ L + E R +V E L +V +L+ +
Sbjct: 64 LDAETPGDLVVTGCMA-----LAQGEEF---------RAADVDAEVLHWDDVPQHVLNGE 109
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ + V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 110 CPTVTPDTETVLDGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAG 169
Query: 238 VKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
KE+ ++ +DTG YG D LP LL I E+ DG +R+GM NP + +E
Sbjct: 170 AKELRVTGQDTGVYGWDTNQGESLLPELLERICTEI--DGEFRVRVGMANPKGVHGVREE 227
Query: 295 IAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+A V H +Y+FLH PVQSGSD VL+ M R++ + ++ VVDT E + ++TD I
Sbjct: 228 LARVFAEHDELYNFLHAPVQSGSDDVLADMRRQHAVGEYVAVVDTFDEYLDYWTLSTDFI 287
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
GFP ET+ DF Q++ L++E + ++++++F RPGT AA MK + + K RS+ ++ +
Sbjct: 288 VGFPSETESDFQQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQIKKDRSKAMSEL 347
Query: 414 FEAFT--PYLGMEGRVERIWITEIAAD----GIHLGYVQVLV---PSTGNMLGTSALVKI 464
T Y M G +R+ +TE D G Y QV+V G +G +I
Sbjct: 348 KMDVTGDAYEAMLGEQKRVLLTEDGTDDSLVGYDEAYRQVVVVDAQQRGLEVGDFVDCEI 407
Query: 465 TSVGRWSVFGEVI 477
TS FGE I
Sbjct: 408 TSHNTVYAFGEPI 420
>gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
Length = 437
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 218/440 (49%), Gaps = 31/440 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQ+D+ M G A GY + E AD++L+NTC V + Q +I +
Sbjct: 4 IAFYTLGCKVNQADTASMEGIFRASGYEVVPFGEPADVYLVNTCVVTNTGQRKSRQIINR 63
Query: 121 CKSAKKPL---VVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLH 175
PL VV GC PQ + +++ +EGV I+G Q+ R+VE+VEE L+ +L
Sbjct: 64 A-VRHNPLSLVVVTGCYPQTAPEEVRAIEGVDVIIGNQERGRIVELVEEALEHKRTEILD 122
Query: 176 RKKLPALDLP------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ +D +K L I GC CTYC ARG L S +++S+
Sbjct: 123 NVQQMTVDTKFEELGVGTETDKTRAFLKIQEGCNQYCTYCIIPFARGPLRSRSLDSIREE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIGMTNP-- 285
V ++A G KEV L G YG+++ L +A+ A L +G +R+G
Sbjct: 183 VGKLVAAGYKEVVLIGIHLGCYGKELAKEGKHVTLYDAVKAALSVEGVQRVRLGSLESVE 242
Query: 286 --PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P +L+ + E + RH LH+P+QSG D +L AM+R Y F +V+ + V
Sbjct: 243 VEPRLLQLMAEEPRLQRH------LHLPLQSGCDKILRAMHRPYDTKRFTELVNEIRAQV 296
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
P + I TD+I GFPGE +EDF T+ K+ F ++HI + R GTPAA MK +V AV
Sbjct: 297 PDVAITTDVIVGFPGENEEDFATTLEFAKKCGFAKMHIFPYSKRKGTPAAEMKEQVDEAV 356
Query: 403 VKKRSRELTSVFEAFTPYL--GMEGRVERIWITEIAAD----GIHLGYVQVLVPSTGNML 456
+R+ L V E + G+VE + + D G+ Y++V+VP T +
Sbjct: 357 KSERAARLAKVDEELHQQMLQSTVGKVEEVLFEQPVDDEHMEGLCGPYLRVVVPGTAELA 416
Query: 457 GTSALVKITSVGRWSVFGEV 476
T VKIT + + GE+
Sbjct: 417 NTIVKVKITGIKEDFLLGEL 436
>gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter
violaceus PCC 7421]
gi|81708482|sp|Q7NE65.1|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421]
Length = 441
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 228/457 (49%), Gaps = 46/457 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +T + TFGC N++DSE MAG L+ GY + D S+ AD+ L NTCT++ ++ +
Sbjct: 7 PQGKTACLVTFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVY 66
Query: 116 TLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + K+ LV+AGCV Q G + L+ + + +V G Q ++R+ +++E +
Sbjct: 67 SYLGQQARRKQRDPHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAE 126
Query: 168 GHEVRLLHRKKLPAL-DLPKVRRNKFVEILP-INVGCLGACTYCKTKHARGHLGSYTVES 225
G +V + + + L D+ K RR+ V I GC CTYC RG S T E+
Sbjct: 127 GEQV--VATEPIEILEDITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPEA 184
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + + A G KEV L ++ AYGRDIG NL LL + P G LR ++P
Sbjct: 185 IKAEICELGASGYKEVTLLGQNIDAYGRDIGTNLASLLR-FIHNAP--GIERLRFATSHP 241
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + L IA P V H+P QSG + VL M R YT +R +++ + ++P
Sbjct: 242 RYFSDEL--IATCAELPKVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRAILPD 299
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D+I GFPGET+ F ++ L+ E +F ++ + + PRPGTPAAR VK
Sbjct: 300 AAISADLIVGFPGETEAQFENSLRLVDELEFDALNTAAYSPRPGTPAARWPGQLDDEVKQ 359
Query: 405 ---KRSRELTS--VFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTS 459
+R+ L + FE YL GR E QVLV T N S
Sbjct: 360 DRLQRTNRLVAQKAFERSQRYL---GRTE-----------------QVLVEET-NPRDRS 398
Query: 460 ALVKITSVGRWSVF-GEVIKILNQ-VDDKIASNRRIS 494
+V T R F GE+ K+ Q VD +I + R S
Sbjct: 399 QVVGRTRTNRLVFFAGELAKLRGQLVDVQITAARAFS 435
>gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2]
gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 416
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 235/438 (53%), Gaps = 45/438 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC ++D+E + +L G L N EE+D+ LI TC V+ + I
Sbjct: 4 VYVETYGCWLAKADAEILRQRL---GLELASNVEESDVVLIYTCAVREDGEVRQLARIRD 60
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ + ++VAGC+ + +K L G +++ QQ++ G E + K
Sbjct: 61 LAKSGREMIVAGCLARLRPYTIKSLAPGAALIYPQQVE----------GGPEREM---KI 107
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIA 235
LP V +P+ VGCLG CT+C TK+ RG G S E +V +V+ +A
Sbjct: 108 LPEFS------GGVVYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPEEVVRKVKKAVA 161
Query: 236 DGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +E++L+ +D YG ++ G NLP LL I+ E+ DG +RIGM+ P +
Sbjct: 162 MGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEV--DGEYRIRIGMSEPWVFEKF 219
Query: 292 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 349
+I +V+ R VY + H+PVQSGSD VL M R+YT+ ++R +V + ++ IA
Sbjct: 220 ADQILDVVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRELVRKIRRVLGETTFIA 279
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
TDII GFPGE +EDF TV L +E +F ++H+++F PRP T AA M K+VP K+RS+
Sbjct: 280 TDIIVGFPGEEEEDFWATVKLAEELQFDKIHVARFSPRPFTEAAVMPKQVPDVEKKRRSK 339
Query: 409 ELTSV-FEAFTPYLGME-GRVERIWITEIAADGIHLG----YVQVLVP--STGNMLGTSA 460
L+ + + G+ G + + I EI G+ +G Y QV+V + +LG
Sbjct: 340 ALSEISLKIAHVRNGLRVGTKDEVLIDEI-DHGLVVGRASDYRQVVVKRGTHRELLGKFT 398
Query: 461 LVKITSVGRWSVFGEVIK 478
V+I + G ++ EVI+
Sbjct: 399 NVRIVAAGPIYLYAEVIE 416
>gi|448415535|ref|ZP_21578265.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
gi|445680488|gb|ELZ32932.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
Length = 423
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 223/432 (51%), Gaps = 33/432 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVEGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S L++ GC+ QG +E I+ + V E G
Sbjct: 65 ESETADLIITGCMALAQGEEFREEEVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL I +E+ DG +R+GM NP I +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLPELLERICSEI--DGDFRVRLGMANPGGIHGIHEELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
RH +Y+F+H+PVQSGSDAVL M R++ ++ F VV+T + ++TD I GFP
Sbjct: 229 FDRHEKLYNFIHLPVQSGSDAVLEEMRRQHRVAKFLEVVETFDRELDYWTLSTDFIVGFP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ET+ D Q++ L +E + +V++++F RPGT AA MK + V K+RS+ ++
Sbjct: 289 SETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKMDV 348
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V EA+ +G RV + + E D + Y Q++V + G G V++TS
Sbjct: 349 VAEAYEAMVGETHRV--MAVEEGTGDSVKCRDEAYRQIIVRNASERGVEPGDFLDVEVTS 406
Query: 467 VGRWSVFGEVIK 478
FG+ ++
Sbjct: 407 HQTVYAFGDPVR 418
>gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
Length = 420
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 29/349 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N +D+ + L A G + EEAD ++NTCTV P++ M L
Sbjct: 26 VYLEEYGCTFNHADTLALVEVLKAQGCTIVPTPEEADAVVLNTCTVIGPTERLM--LRQM 83
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKL 179
+ + L + GC+P Q+D + EV + + E+R
Sbjct: 84 RRYSGHDLYLTGCMP----------------AVQMDAICEVCSPKVIPPEEIR------- 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
A L + ++ + GC G C+YC T++ARG L S+ + RV+ + +G
Sbjct: 121 AAYTLVNTTVPSAIGVVQVGQGCAGRCSYCITRNARGPLQSFQPPDIYNRVQQAVDNGAV 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
EV L+ +D ++G D+G +LP LL I A P G LR+GM NP +L L ++
Sbjct: 181 EVQLTGQDLSSWGLDLGRSLPDLLRGITA-FP--GDYRLRLGMMNPATVLPILDDLIAAY 237
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ ++ FLH+P+QSGSD VL+AMNR YT SD + ++ E+ P + + TD+I GFPGE
Sbjct: 238 QSDRIFQFLHLPIQSGSDRVLAAMNRSYTASDVQQILRAFREVHPDLTLMTDLIVGFPGE 297
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
TD+DF +T+ +I +V+++++ RPGTPAA + + +V K RSR
Sbjct: 298 TDQDFEETLQMITALSPNKVNMTRYSGRPGTPAADLPDLQDSVKKDRSR 346
>gi|76154241|gb|AAX25732.2| SJCHGC04814 protein [Schistosoma japonicum]
Length = 350
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 151/239 (63%), Gaps = 25/239 (10%)
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LL +V +PP MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PVQSGSDAVL
Sbjct: 24 LLAGLVPLIPP--GCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGSDAVLD 81
Query: 322 AMNREYTLSDFRTVVDTLIELVP-----------------GMQIATDIICGFPGETDEDF 364
AM REYT+ +F TVVD L++ V + IATD+ICGFP ET+++F
Sbjct: 82 AMKREYTVEEFSTVVDYLMKNVKPPSLPPYALDDAPNGSGALTIATDVICGFPTETNKNF 141
Query: 365 NQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGM 423
+T LIK+Y+FP +HI+QF+ RPGTPAA M +K S+ VK R+R L +F ++ Y G
Sbjct: 142 EETFELIKKYRFPVLHINQFFARPGTPAANMSRKANSSEVKHRTRRLHDLFRSYRTYDGR 201
Query: 424 EGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
G R+ ITE + DG Y Q+L+P ++ G LV+IT ++ + G +I
Sbjct: 202 IGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKLPDVYGCIVLVRITECDKFFMRGIII 260
>gi|351710010|gb|EHB12929.1| CDK5 regulatory subunit-associated protein 1-like 1 [Heterocephalus
glaber]
Length = 279
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 134/203 (66%), Gaps = 26/203 (12%)
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VV
Sbjct: 1 MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCMADFKRVV 60
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
D L + VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M+
Sbjct: 61 DFLKKKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKME 120
Query: 397 KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPS 451
+VP+ V+ G +++ +TE + D Y QVLVP
Sbjct: 121 QVPTQVI---------------------GEKQKVLVTEESFDSKFYVAHNQFYEQVLVPK 159
Query: 452 TGNMLGTSALVKITSVGRWSVFG 474
+ +G V I G+ + G
Sbjct: 160 NPSFMGKMVEVDIYESGKHFMKG 182
>gi|448606159|ref|ZP_21658738.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
gi|445739576|gb|ELZ91083.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
Length = 429
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 226/428 (52%), Gaps = 35/428 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
+P ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVP-STGNMLGTSALVKITS 466
V A+ +G E V + + E D + Y Q++V +T + L ++T
Sbjct: 347 DIVAAAYDEMVGTERDV--LVVEEGTGDSVKCRDEAYRQIIVQNATEHGLEPGDFARVTV 404
Query: 467 VGRWSVFG 474
+V+
Sbjct: 405 TAHQTVYA 412
>gi|448611787|ref|ZP_21662217.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
gi|445742548|gb|ELZ94042.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
Length = 430
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 227/438 (51%), Gaps = 33/438 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC + QG E I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFRNEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +++A+V
Sbjct: 171 ELRITGQDTGVYGWDNGDRKLPELLDRICSEI--EGEFRVRVGMANPGGVHGIRQDLADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+H +Y+F+H PVQSGSD VL M R++ + F+ +V+T E + ++TD I G+P
Sbjct: 229 FAKHDTLYNFIHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETDED +++ L++E + ++++++F RPGT AA +K + + K+RS+E++
Sbjct: 289 TETDEDHERSMALLREIRPEKINVTRFSKRPGTDAADLKGLGGTIKKERSKEMSEAKMDI 348
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V A+ +G E V + + + D + Y Q++V + G G A V++T+
Sbjct: 349 VAAAYEDMVGTEHDV--LVVQDGTGDSVKCRDEAYRQIIVQNASEHGLEPGNFARVRVTA 406
Query: 467 VGRWSVFGEVIKILNQVD 484
FGE ++ + D
Sbjct: 407 HQTVYAFGEPVETRPEPD 424
>gi|395645589|ref|ZP_10433449.1| MiaB-like tRNA modifying enzyme [Methanofollis liminatans DSM 4140]
gi|395442329|gb|EJG07086.1| MiaB-like tRNA modifying enzyme [Methanofollis liminatans DSM 4140]
Length = 413
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 192/354 (54%), Gaps = 30/354 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC++N +D+ +A L G + +EAD+ +INTCTV ++ M I
Sbjct: 9 VYIETYGCTYNHADTRKLALILEGQGCRIVAGPDEADVVVINTCTVIGKTERHMLRRIRA 68
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV--EVVEETLKGHEVRLLHRKK 178
A + L V GC+P ++ I+G R++ E + E G ++
Sbjct: 69 --FADRDLYVTGCMPV-------VQAAEILGAAPSARLLFPEEISERFCGACTGVVGGAG 119
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
I+ + GC G C YC T+ ARG L S E++ V ++ G
Sbjct: 120 ----------------IVQVAAGCAGRCAYCITRAARGPLRSRPKEAICREVEALVGRGA 163
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
EV ++ +D A+G D+G LP L++A V+ LP G +LR+GM NP +A +
Sbjct: 164 YEVQVTGQDVSAWGMDLGERLPALIDA-VSVLP--GDFLLRLGMMNPATAQGIAVPLARL 220
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
L V+SF+H+PVQSGSDAVL+AM R YT +F +V + P ++I TD I G+P
Sbjct: 221 LGEAKVFSFVHLPVQSGSDAVLAAMRRGYTAGEFEAMVAAFRKACPEVRICTDFIVGYPT 280
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ET+EDF +++ L++ + +V+++++ PRPGTPAA +K +P + K RSR L +
Sbjct: 281 ETEEDFAESMALLRAIRPEKVNVTRYSPRPGTPAAALKTMPERIAKDRSRILDA 334
>gi|448565475|ref|ZP_21636342.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
gi|445715219|gb|ELZ66975.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
Length = 429
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 142/434 (32%), Positives = 227/434 (52%), Gaps = 37/434 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+S L++ GC + QG+ D +E EG+ I+ + V E G V
Sbjct: 65 ESETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V H +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 GVFAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELAYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
+P ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKI 464
V A+ +G E V + + E D + Y Q++V + G G A VK+
Sbjct: 347 DIVAAAYDEMVGTEREV--LVVEEGTGDSVKCRDEAYRQIIVQNATEHGLEPGDFARVKV 404
Query: 465 TSVGRWSVFGEVIK 478
T+ F E ++
Sbjct: 405 TAHQTVYAFAEPVE 418
>gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6]
gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6]
Length = 425
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 198/361 (54%), Gaps = 11/361 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKG-HEVRLLHRK 177
KS K +VVAGC+ + + +K L V I+ + + + LKG E +
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKNNLLKGCSEKNGKSNE 122
Query: 178 KLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L D + KV + LPI GCLG+CTYC K ARG+L SY + + +
Sbjct: 123 NLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIFKKAEE 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F L
Sbjct: 183 LVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPLL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+ E + V FLH+P+QSG D VL MNR Y++ +F +V++ + + TD+
Sbjct: 240 DELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYSVDEFISVLNEFKLKIKNLNFTTDV 299
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L
Sbjct: 300 IVGFPTETEEAFQNTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILNE 359
Query: 413 V 413
+
Sbjct: 360 L 360
>gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM
superfamily, TRAM family [uncultured archaeon]
Length = 430
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 199/386 (51%), Gaps = 28/386 (7%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
GT ++++TFGC+ N D+ M L G+ + + SE ADI ++NTCTV ++ +
Sbjct: 9 GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K K +VVAGC+ +L ++ G +V ++
Sbjct: 68 RLNELKERGKAVVVAGCMAAAQPELVR---------------------SILGDDVAMVTP 106
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ + A + ++ + + ++ I GC+G CTYC K ARG L SY E + V++ +
Sbjct: 107 RDIQAREKQRLEFDGVIAVITIAQGCIGKCTYCIVKQARGKLKSYKPEKICEAVKSAVES 166
Query: 237 GVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+
Sbjct: 167 GANEIRITSQDSSAYGWGSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
E ++ F HVPVQSGSD VL M R Y ++DF +V + I+TD I G
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVLREMRRNYKVADFVEIVTNIRARFRQSTISTDFIIG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP ET+EDF ++ L++E K +V+I++F PRP T A+++ + K+RSR ++ +
Sbjct: 284 FPTETEEDFFASLYLLEEIKPEKVNITRFSPRPRTEASKLTDLLEREKKRRSRIFSTGYH 343
Query: 416 --AFTPYLGMEGRVERIWITEIAADG 439
F +EG + +TE G
Sbjct: 344 NIVFAKNKELEGAELPVLVTEPGKKG 369
>gi|355571405|ref|ZP_09042657.1| MiaB-like tRNA modifying enzyme [Methanolinea tarda NOBI-1]
gi|354825793|gb|EHF10015.1| MiaB-like tRNA modifying enzyme [Methanolinea tarda NOBI-1]
Length = 410
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 207/393 (52%), Gaps = 34/393 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT +YM+T+GC++N+ DS +A L A G L + AD +INTC V ++ +
Sbjct: 11 LPGTR-VYMRTYGCTYNEGDSWKLAEILKARGCILVSDPLLADAIVINTCIVVGKTERKI 69
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
L + A +PL V GC+P +V I V + V ++
Sbjct: 70 --LHELRQHAGRPLYVTGCMP-------------LVQADAIRNVCDPV----------II 104
Query: 175 HRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
H + A +L V + V ++ GCLG+C+YC T ARG L S ++E +
Sbjct: 105 HPDDIHAAYAELKTVPQGS-VGVVQACRGCLGSCSYCVTHLARGKLVSRSLEDVTQEAAR 163
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
++A G E+ L+ +D A+GRD G + LL ++ A G M+R GM NP + +
Sbjct: 164 LVAAGAVELRLTGQDLSAWGRDTGQSPADLLRSLDALC---GRFMIRAGMMNPATLFPVM 220
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+AE R P +++ LH+P+QSG++ VLS M R YT ++V+ VP + + TDI
Sbjct: 221 DEVAEAFRLPKIFAALHLPIQSGAEKVLSRMRRGYTQEQVVSIVERFEREVPALSLTTDI 280
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICG+PGET +DF++T+ L++ + +V ++++ PRPGT A K +P + K+RSR L
Sbjct: 281 ICGYPGETGDDFSETLALLQRIRPDRVIVTRYSPRPGTRAWHEKDMPDRIKKERSRTLRV 340
Query: 413 VFE--AFTPYLGMEGRVERIWITEIAADGIHLG 443
E A +GRV + ITE G LG
Sbjct: 341 CAEEIARQKNAKWKGRVLPVMITEHVRPGTSLG 373
>gi|448546026|ref|ZP_21626353.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|448548100|ref|ZP_21627444.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|448557123|ref|ZP_21632558.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
gi|445703372|gb|ELZ55303.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|445714802|gb|ELZ66560.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|445714992|gb|ELZ66749.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
Length = 429
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 224/428 (52%), Gaps = 35/428 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC + QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
+P ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVP-STGNMLGTSALVKITS 466
V A+ +G E V + + E D + Y Q++V +T + L ++T
Sbjct: 347 DIVAAAYDEMVGTEREV--LVVEEGTGDSVKCRDEAYRQIIVQNATEHGLEPGDFARVTV 404
Query: 467 VGRWSVFG 474
+V+
Sbjct: 405 TAHQTVYA 412
>gi|402584247|gb|EJW78189.1| radical sam protein, partial [Wuchereria bancrofti]
Length = 224
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 137/200 (68%), Gaps = 6/200 (3%)
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT DF VV
Sbjct: 1 MLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDFCRVV 60
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
D +I+ VP + IATD IC +P ET+ DF +++ L+++Y+FP + I+QFYPR GTPAA +K
Sbjct: 61 DYMIQNVPNIYIATDFICAYPTETESDFEESMALVRKYRFPSLFINQFYPRIGTPAANLK 120
Query: 397 KVPSAVVKKRSRELTSVFEAFTPYLGME-GRVERIWITEIAADGIHL-----GYVQVLVP 450
K+ + ++R+ E++S+F +++ Y G R+ + E+A D H Y L+P
Sbjct: 121 KIDTIEARRRTAEMSSLFRSYSRYNKERIGEKHRVLVCELATDQQHYVGHNKYYEHFLIP 180
Query: 451 STGNMLGTSALVKITSVGRW 470
S +LG V+IT V ++
Sbjct: 181 SKKCLLGKWVQVRITDVSKF 200
>gi|374629251|ref|ZP_09701636.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
gi|373907364|gb|EHQ35468.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
Length = 403
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 123/351 (35%), Positives = 198/351 (56%), Gaps = 27/351 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++ +T+GC+ N +D+ + + G + ++EAD +INTCTV + ++ AM + A
Sbjct: 9 VHFETYGCTFNYADTGKLMDIALSQGCKVVP-ADEADTVVINTCTVVAQTERAM--IRAV 65
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ + +VV GC+P +L + V+ R++ + E + H R+ H +
Sbjct: 66 QDYSDRDVVVTGCMPVVQAEL-------LRSVRPDIRII--LPEEIYRHSERIGHSVE-- 114
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
V ++ + GCLG+C+YC T+ ARG L S V +V +I++GV E
Sbjct: 115 ----------GGVGVVQMGTGCLGSCSYCITRFARGELHSNPVADIVSETERLISEGVHE 164
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+ +D AYG D G NL LL A+ AE+ +G +R GM NP +L +L EI +
Sbjct: 165 IQLTGQDVSAYGYDNGENLGTLLKAM-AEV--EGEFEIRAGMMNPKTVLPYLDEIIDGFL 221
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
++ F+H+PVQSGSD VLS M R YT +DF +V + VP ++++TD+I GFP E+
Sbjct: 222 SDKIFKFIHIPVQSGSDRVLSDMGRGYTSADFERIVTEFRKKVPDIRVSTDLIVGFPTES 281
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
+EDF +T+ ++K +V+I++F R TPAA K +P + K+RSR LT
Sbjct: 282 EEDFKETLEMVKRVCPTKVNITRFSVRENTPAAEYKDMPDWIKKERSRALT 332
>gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|448285580|ref|ZP_21476821.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|445576216|gb|ELY30673.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
Length = 417
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 221/431 (51%), Gaps = 33/431 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVEEPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L++ GC + QG +E I+ + V E G
Sbjct: 65 EEETADLIITGCMALAQGEEFHEEDVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPPVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP I +E+ EV
Sbjct: 171 EIRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRLGMANPGGIHGIHEELVEV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
RH +Y+F+H+PVQSGSD VL AM R++ + F +V+T E + ++TD I GFP
Sbjct: 229 FDRHDKLYNFIHLPVQSGSDTVLEAMRRQHRVDKFVEIVETFDETLDYWTLSTDFIVGFP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ET+ D Q++ L +E + +V++++F RPGT AA MK + V K+RS+E++
Sbjct: 289 TETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAADMKGLGGTVKKERSKEMSELKMDI 348
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V EA+ +G RV + + E D + Y Q++V + G G V++TS
Sbjct: 349 VAEAYESMIGETHRV--MVVREGTGDSVKCRDEAYRQIIVQNASEHGIEPGDFLDVEVTS 406
Query: 467 VGRWSVFGEVI 477
FG+ +
Sbjct: 407 HQTVYAFGKPV 417
>gi|146296852|ref|YP_001180623.1| MiaB family RNA modification protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 434
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 233/443 (52%), Gaps = 38/443 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQ +++ +A GY + D +EADI++INTCTV + S I +
Sbjct: 3 IAFYTLGCKVNQYETQAIAETFERLGYEIVDFDQEADIYVINTCTVTNVSDRKSRQAIKR 62
Query: 121 CK--SAKKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
K S +VV GC PQ ++++++EGV I VG + +++VE V E LK +
Sbjct: 63 AKKTSPDSIVVVMGCYPQVYPQEVQKIEGVDIIVGTRDREKIVEYVTEYLK-------QK 115
Query: 177 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 224
KK+ A++ + +R+ F E+ + I GC C+YC +ARG + S ++
Sbjct: 116 KKILAVN-NEYKRDTFEELKISSFNERTRAFIKIEEGCEQFCSYCIIPYARGSVVSRSLS 174
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMT 283
S++ V+ + ++G KE ++ + AYG+D+ + + L ++ E+ + +R+
Sbjct: 175 SILDEVQRLASNGYKEFVITGINISAYGKDL--DYKVTLVDVIEEISKIEKVRRIRLSSL 232
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E I +++ + LH+ +QSGSD +L MNR YT ++R +V+ +
Sbjct: 233 EPIVMKEDF--IKRLVKIEKLCHHLHLSLQSGSDKILKLMNRHYTTDEYRQIVEMVRGYW 290
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
+ TDII GFPGE+DEDF +TV +KE F ++H+ +F P+ GT A M +V SA
Sbjct: 291 NDVAFTTDIIVGFPGESDEDFERTVEFVKEIGFSRIHVFRFSPKKGTNAYNMPYQVNSAE 350
Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAA-----DGIHLGYVQVLVPSTGNM 455
+KRS L SV +F + EG++ + I E ++ +G Y++ LVP T ++
Sbjct: 351 KEKRSEILKSVARKLSFGFHKKFEGKIVDVLIEENSSLEGYFEGYSGNYIRTLVPKTESI 410
Query: 456 -LGTSALVKITSVGRWSVFGEVI 477
+G VK+ V G++I
Sbjct: 411 RVGEIYKVKVKEAFEQYVIGDII 433
>gi|448440848|ref|ZP_21588846.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
gi|445689756|gb|ELZ41982.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
Length = 442
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 222/436 (50%), Gaps = 30/436 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHHPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ ++ E V +I EV L G E +
Sbjct: 63 ELEDVTAELVVTGCMALAQGEMFEEAEVD----AEILHWDEVPSYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAEV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL M R++ + FR +VDT + + ++TD I GFP
Sbjct: 228 FADNEELYDFIHAPVQSGSDEVLEDMRRQHRVEKFREIVDTFDDRLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD+D ++++L+ E + ++++++F RPGT AA MK + + K+RS+ ++
Sbjct: 288 TETDDDHERSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKAMSELKMEV 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V EA+ +G E + + E D + Y Q++V + G +G +++T
Sbjct: 348 VGEAYESMVGE--TFEVLVVEEGTGDSVKCRDGAYRQIIVQNATERGVDVGDFLTIEVTG 405
Query: 467 VGRWSVFGEVIKILNQ 482
FGE + ++
Sbjct: 406 HNTVYAFGEPVAAADR 421
>gi|419760967|ref|ZP_14287228.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
gi|407513872|gb|EKF48745.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
Length = 429
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 140/440 (31%), Positives = 233/440 (52%), Gaps = 33/440 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KT+GC N++DSE L GY +N EADI ++NTC V+ ++ + I +
Sbjct: 3 FFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG + +
Sbjct: 63 LRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD- 118
Query: 177 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
KL +D + R +K + I GC CTYC + RG S +E ++ V+ +
Sbjct: 119 DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMEDILQEVKNLS 178
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI-GMTNPP--FIL 289
+GV+E+ ++ AYG+D+ G +L LLN + + RI +T+ P F L
Sbjct: 179 LNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKNIENIERIWFLTSYPTDFSL 233
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ +EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP I+
Sbjct: 234 DIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVPDASIS 290
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKRS 407
+DII GFP ET++DF QTV L+KE KF +++++ + PR GT A + VP AV +R
Sbjct: 291 SDIIVGFPDETEDDFQQTVKLVKEIKFERLNLAIYSPREGTIAWKYFEDNVPHAVKTRRM 350
Query: 408 RELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLG--YVQVLVPSTGN--MLGTSA 460
L ++ + L ++ VE I + E A G+ G ++ G+ ++G
Sbjct: 351 AYLLNLQKEVNKMLNESYLDKTVEVI-VEERAKSGLFYGRDIRNKIIAFEGDESLIGKKI 409
Query: 461 LVKITSVGRWSVFGEVIKIL 480
LVKI ++G++IKI+
Sbjct: 410 LVKIKKTTAGPLYGDIIKII 429
>gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5]
gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5]
Length = 428
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 196/359 (54%), Gaps = 21/359 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC N+ +S MA L G+ + ++ E AD+ ++NTC V+ +++ + + +
Sbjct: 4 VYIETFGCWLNKGESNIMATLLKRRGHKVVESIENADVVILNTCAVRGDTETKIFRRLRE 63
Query: 121 CKSAKKP----LVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+ ++ LVV+GC+ P+ D+ S+V I+++ EVVE K VR
Sbjct: 64 LEELRQKRGFRLVVSGCLVNVRPKSILDVAP--SASLVEPDAIEKIPEVVESEDKLLIVR 121
Query: 173 LLH--RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGR 229
R LP V ++PI GCLG+C +C RG + SY ++ ++
Sbjct: 122 QYKASRNVLPDYS------GGAVHVVPIESGCLGSCAFCIEWVTRGTGVKSYPIDVIIEN 175
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR ++ G +E++L+ +D AYG D+G NL L+ I+ E+ DG +R+GM P +
Sbjct: 176 VRAAVSKGAREIFLTGQDVAAYGYDLGTNLYELVKRILEEV--DGEYRVRLGMMEPMLLG 233
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
LK + E+ R +Y + H+P QSG D VL M R+YT+ +++ +V+T+ I
Sbjct: 234 RFLKNLLELFRDERLYRYFHIPAQSGDDKVLRLMRRKYTVEEYKGIVNTIRGSGWKFSIV 293
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
TDII GFPGE + +F T+ ++E F +VH++++ RP T M VP V K+RSR
Sbjct: 294 TDIIVGFPGEGEAEFQNTLKFLREVMFDKVHVARYTFRPFTEGYVMSGVPEPVKKQRSR 352
>gi|440912126|gb|ELR61722.1| hypothetical protein M91_07895, partial [Bos grunniens mutus]
Length = 277
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 133/190 (70%), Gaps = 5/190 (2%)
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
KE+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATDI
Sbjct: 1 KEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIATDI 60
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412
ICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 61 ICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSR 120
Query: 413 VFEAFTPYLGMEGRVERIWITEIAAD-----GIHLGYVQVLVPSTGNMLGTSALVKITSV 467
+F ++ PY G+ +++ +TE + D + Y QVLVP +G V I
Sbjct: 121 IFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYES 180
Query: 468 GRWSVFGEVI 477
G+ + G+ +
Sbjct: 181 GKHFMKGQPV 190
>gi|448623042|ref|ZP_21669691.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
gi|445753550|gb|EMA04967.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
Length = 429
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 225/428 (52%), Gaps = 35/428 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDADHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVP-STGNMLGTSALVKITS 466
V A+ +G E V + + E D + Y Q++V +T + L ++T
Sbjct: 347 DIVAAAYEEMVGTERDV--LVVEEGTGDSVKCRDEAYRQIIVQNATEHGLEPGDFARVTV 404
Query: 467 VGRWSVFG 474
+V+
Sbjct: 405 TAHQTVYA 412
>gi|448344382|ref|ZP_21533293.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
gi|445638501|gb|ELY91629.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
Length = 417
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/405 (33%), Positives = 214/405 (52%), Gaps = 30/405 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E + + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL AI DG +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
H +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GFP
Sbjct: 228 FAEHDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E+++
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDL 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGN 454
V +A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 348 VADAYADMVG-EVREDVLVVEEGTADSVKCRDSAYRQLIVQNASD 391
>gi|448583429|ref|ZP_21646785.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
gi|445729658|gb|ELZ81253.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
Length = 429
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 140/434 (32%), Positives = 226/434 (52%), Gaps = 37/434 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V H +Y+F+H PVQSGSD VL M R++ + FR + +T + ++TD I G
Sbjct: 227 AVFAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIAETFDRELAYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
+P ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKI 464
V A+ +G E V + + E D + Y Q++V + G G A VK+
Sbjct: 347 DIVAAAYDEMVGTEREV--LVVQEGTGDSVKCRDEAYRQIIVQNATEHGLEPGDFARVKV 404
Query: 465 TSVGRWSVFGEVIK 478
T+ F E ++
Sbjct: 405 TAHQTVYAFAEPVE 418
>gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
Length = 452
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 221/450 (49%), Gaps = 40/450 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+ADI TC V+ + + + +A
Sbjct: 2 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 61
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 62 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 121
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 122 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 182 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 239
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 240 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPD 297
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ ++TDII GFPGET +DF T L+ E + QV + R GTPAA M P V++
Sbjct: 298 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 357
Query: 405 KRSRELTSV-----FEAFTPYLG------MEG---RVERIWITEIAADGIHLGYVQVLVP 450
+R L + FEA LG +EG R ER+ +A V P
Sbjct: 358 QRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERL----LAGKSPKNQTVHAPAP 413
Query: 451 S---TGNMLGTSALVKITSVGRWSVFGEVI 477
+ ++ G++ V++ W + GE++
Sbjct: 414 AGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 443
>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
Length = 521
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 219/449 (48%), Gaps = 43/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TDN+++AD+ L+NTC ++ +++ + +
Sbjct: 69 FYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIRENAENKVFGELGH 128
Query: 121 CKSAK--KPLV---VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K KP + V GC+ Q ++ LK V ++ G I R+ ++ E K
Sbjct: 129 LKHLKREKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNEAYMSKA 188
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 189 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 248
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +EV L ++ AYG+DI L ++ EL +R ++P
Sbjct: 249 EVRHLAAQGYQEVTLLGQNVNAYGKDIEDLENYGLGDLMDELRKIDIPRIRFTTSHPRDF 308
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS AVL M R+YT F +V + +PG+ +
Sbjct: 309 DDHLIEV--LAKKGNLVEHIHLPVQSGSSAVLKIMARKYTRERFLELVGKIKAAMPGVAL 366
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII G+P ET+E F +T++L +E F + PR GTPAA+M VP V K+R
Sbjct: 367 TTDIIVGYPNETEEQFEETLSLYREVGFESAFTYIYSPREGTPAAKMNDNVPMEVKKERL 426
Query: 408 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L + EA Y G I E+ +G I GY V
Sbjct: 427 QRLNQLVNEYSGEALKQYEGK--------IVEVLVEGESKKNPEILAGYTRRSKLVNFKA 478
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P T +G VKIT WS+ GE+I+
Sbjct: 479 PKTA--IGKIVKVKITDTKSWSLNGEMIE 505
>gi|338730816|ref|YP_004660208.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
gi|335365167|gb|AEH51112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
Length = 433
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/434 (31%), Positives = 227/434 (52%), Gaps = 22/434 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ----SAMDT 116
IY+KT+GC N++D+E MAG L+ G+ + D+ ++AD+ ++NTC V+ SQ SA+
Sbjct: 3 IYIKTYGCQMNENDTEIMAGILAQKGHQIVDDLDQADVVILNTCVVRQKSQDKYHSALGQ 62
Query: 117 LIAKCKSAKKPLV-VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
L+ K K LV ++GC + +G V G + I V EV+E G +V L
Sbjct: 63 LLKMKKEGKIKLVGISGCGANLEAEQLIKDGADFVLGSRSILAVAEVLERAASGEKVIYL 122
Query: 175 HRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ LP+ R + + I GC CTYC + RG S +E ++ V+ +
Sbjct: 123 EDTICSDMSSLPRSRSSTHHAWVTIIHGCNRFCTYCIVPYTRGREKSRPMEDVLAEVKKL 182
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
GVKE+ ++ AYG+D+ G +L L+N +E+ +G + + P I +
Sbjct: 183 AESGVKEITFLGQNVDAYGKDLKDGTSLAKLINK-ASEI--EGIERIWFLTSYPTDITDE 239
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L I V ++P H+P+QSGS+ +L MNR YT F +V+ + ++VP I++D
Sbjct: 240 L--IETVAKNPKAAKSFHIPIQSGSNRILRLMNRRYTREQFAELVEKIRKIVPQASISSD 297
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
+I GFP ET+ED QTV ++K +F +++++ + PRPGT A++ K VP V +R E
Sbjct: 298 VIVGFPTETEEDHQQTVEIVKTLQFERLNLAIYSPRPGTVASKYFKDDVPREVKVRRLNE 357
Query: 410 LTSVFEAFTPYLGME--GRVERIWITEIAADGIHLGY----VQVLVPSTGNMLGTSALVK 463
L + + L +V +++ DG++ G +L ++ +G LVK
Sbjct: 358 LLELQKEINKKLNERYLNQVVELFVEGKTKDGLYYGRDIRNKIILFKASALQIGQRVLVK 417
Query: 464 ITSVGRWSVFGEVI 477
IT + ++GE++
Sbjct: 418 ITRITAGPLYGELV 431
>gi|448311468|ref|ZP_21501229.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
gi|445604799|gb|ELY58741.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
Length = 417
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 224/430 (52%), Gaps = 31/430 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A L V GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEATADLYVTGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAD 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 300 R-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGSD VL M R++ +S++ V+D + + ++TD I GFP
Sbjct: 229 AAYDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIDAFDDALEYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
ETD D +Q++ L++E + +V++++F RPGT AA MK + + K+RS+E+++ V
Sbjct: 289 ETDRDHDQSMALLRETRPEKVNVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIV 348
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITSV 467
EA+ +G E R + + + + AD + Y Q++V + G G +++T+
Sbjct: 349 GEAYEAMVG-ERRDDCLVVEDGTADSVKCRDSAYRQLIVQNASEHGLEPGDFVDLEVTAH 407
Query: 468 GRWSVFGEVI 477
FGE +
Sbjct: 408 ETMYAFGEPV 417
>gi|448600667|ref|ZP_21656046.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
gi|445734680|gb|ELZ86236.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
Length = 429
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 222/428 (51%), Gaps = 35/428 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVP-STGNMLGTSALVKITS 466
V A+ +G E V + + E D + Y Q++V +T + L ++T
Sbjct: 347 DIVAAAYDEMVGTERDV--LVVEEGTGDSVKCRDEAYRQIIVQNATEHGLEPGDFARVTV 404
Query: 467 VGRWSVFG 474
+V+
Sbjct: 405 TAHQTVYA 412
>gi|330506789|ref|YP_004383217.1| hypothetical protein MCON_0563 [Methanosaeta concilii GP6]
gi|328927597|gb|AEB67399.1| conserved hypothetical protein [Methanosaeta concilii GP6]
Length = 437
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 197/380 (51%), Gaps = 40/380 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++TFGC+ N +S+ +A L G+ + +EAD+ ++NTC V ++ + + +
Sbjct: 3 FYIETFGCTSNFGNSQDLAEALREMGH-IPSGLKEADMVIVNTCAVTERTERKILRRLRQ 61
Query: 121 CKSAKKPLVVAGC----VPQGSRDL---------KELEGVSIVGV-------------QQ 154
+ + LVVAGC +PQ + L + + I G+ Q
Sbjct: 62 LEGER--LVVAGCLAAAIPQSIQTLCCRGRLGPLSQGDAARIAGLFDGWLMPSQHMQSGQ 119
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
+ EE L+ + + R+ P + I+ + GC G+C+YC A
Sbjct: 120 LQSQNFQSEEMLRERHIAVHLRESSPG--------GESCGIVNVADGCNGSCSYCIVSKA 171
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274
RG L S VE +V V + G E+ +S++DT A+G DIG +L LL + E+P G
Sbjct: 172 RGRLKSRPVEDVVLAVERLAQLGTAEIQISAQDTAAFGSDIGSDLAGLLETLT-EIP--G 228
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
MLR+GM NP + E + P +Y FLH+PVQSGSD +L M R YT +F
Sbjct: 229 DFMLRVGMMNPDSARLIQNRLIEAFQSPKIYRFLHIPVQSGSDEILQRMGRVYTSDEFFE 288
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
+V P + I TDII GFPGETD+DF ++++LI+ + +V+I++F PRPGT AA
Sbjct: 289 LVSAFRFAYPDISIITDIIVGFPGETDKDFEESMSLIERLQPDKVNITRFSPRPGTSAAS 348
Query: 395 MKKVPSAVVKKRSRELTSVF 414
+ +P + K RSRE+T ++
Sbjct: 349 LYDMPDRIKKDRSREMTRLW 368
>gi|433423456|ref|ZP_20406225.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
gi|432198354|gb|ELK54647.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
Length = 429
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 223/428 (52%), Gaps = 35/428 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVP-STGNMLGTSALVKITS 466
V A+ +G E V + + E D + Y Q++V +T + L ++T
Sbjct: 347 DIVAAAYDEMVGTERDV--LVVEEGTGDSVKCRDEAYRQIIVQNATEHGLEPGDFARVTV 404
Query: 467 VGRWSVFG 474
+V+
Sbjct: 405 TAHQTVYA 412
>gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
Length = 459
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 221/450 (49%), Gaps = 40/450 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+ADI TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 69 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 129 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDDVPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ ++TDII GFPGET +DF T L+ E + QV + R GTPAA M P V++
Sbjct: 305 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 364
Query: 405 KRSRELTSV-----FEAFTPYLG------MEG---RVERIWITEIAADGIHLGYVQVLVP 450
+R L + FEA LG +EG R ER+ +A V P
Sbjct: 365 QRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERL----LAGKSPKNQTVHAPAP 420
Query: 451 S---TGNMLGTSALVKITSVGRWSVFGEVI 477
+ ++ G++ V++ W + GE++
Sbjct: 421 AGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450
>gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
Length = 434
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 217/429 (50%), Gaps = 30/429 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ D GV +I EV L G E +
Sbjct: 63 ELEDVTAELVVTGCMALAQGDAFREAGVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S TVE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHEELAEV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP
Sbjct: 228 FADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ET+ D ++++L+ E + ++++++F RPGT AA MK + + K+RS+ ++
Sbjct: 288 TETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSELKMEV 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V +A+ +G E + + E D + Y Q++V + G +G V++T
Sbjct: 348 VGDAYESMVGE--TFEVLVVEEGTGDSVKCRDGAYRQIIVQNAAERGVAVGDFLEVEVTG 405
Query: 467 VGRWSVFGE 475
FGE
Sbjct: 406 HNTVYAFGE 414
>gi|410458684|ref|ZP_11312441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
gi|409931034|gb|EKN68022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
Length = 515
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 228/442 (51%), Gaps = 30/442 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG L+ G+ TD++EEADI L+NTC V+ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGILTEMGFENTDSTEEADIILLNTCAVRENAENKVFGEIGH 130
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q +R L++ + V ++ G I R+ ++++E + G E
Sbjct: 131 LKQLKREKPDLILGVCGCMSQEEGVVNRLLQKHQQVDLIFGTHNIHRLPQLLKEAMFGKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK+R K + I GC CTYC + RG S E ++
Sbjct: 191 RVVEVWSKEGDVIENLPKIRNGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIID 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRDLARQGYKEITLLGQNVNAYGKDFE-DMKYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M+R+YT + +V + E +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMDHIHLPVQSGSTEMLKIMSRKYTREQYLELVRKIKEAIPNVSL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TD+I GFP ETDE F T++L +E ++ + + PR GTPAA M VP V K+R
Sbjct: 368 TTDLIVGFPNETDEQFEDTLSLYREVEYDSAYTFIYSPREGTPAADMVDNVPMEVKKERL 427
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ--VLVPSTG--NML 456
+ L ++ + + + + I E+ +G I GY + LV G + +
Sbjct: 428 QRLNALVNEIS---AKKNKQYQDKIVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAI 484
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
G VKIT WS+ GE+++
Sbjct: 485 GQIVKVKITDAKTWSLNGEMVE 506
>gi|375085640|ref|ZP_09732272.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
gi|374567051|gb|EHR38283.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
Length = 433
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 217/437 (49%), Gaps = 27/437 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ ++E M G GY + D SE AD ++INTC+V + LI +
Sbjct: 4 VALTTLGCKVNQVETEIMEGLFRNRGYEIVDFSEPADFYIINTCSVTHLGERKSRQLIRR 63
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 169
++A GC Q S ++ ++EGV +V G +Q D++V++VE+ + +
Sbjct: 64 ANRLNDNAIIAVTGCYAQIASDEISKIEGVRVVIGTKQRDKIVDLVEKAAREDGLFNEVN 123
Query: 170 EVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+V +H + +P P R L I GC C+YC + RG + S +ES+
Sbjct: 124 DVMHMHEFEDIPLYGTPHRTR----AFLKIQDGCCNFCSYCIIPYTRGPIRSRKLESIKT 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V ++ + E+ + GAYGRD G N+ L +A+ L + LR+G
Sbjct: 180 AVDQLVEENFHEIVFTGIHLGAYGRDFKGENIS-LSDAVEICLANENLKRLRLGSLESIE 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
I L E+ + H LH+P+Q+GSD +L AMNR YT +F +++ + VP +
Sbjct: 239 ISPRLLELVKT--HKRFTKHLHLPLQAGSDEILKAMNRHYTTEEFARLIENIRREVPDIA 296
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
I+TDII GFPGETDE F +++ K F ++H+ + R GTPAA+M VKK+
Sbjct: 297 ISTDIIVGFPGETDELFQKSLEFAKSMGFMKMHVFPYSKRAGTPAAKMTNQIDEAVKKQR 356
Query: 408 RELT------SVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-GTSA 460
L S E + +LG E V + +G+ Y++V + + G + G
Sbjct: 357 VHLMQKMAEQSAVEFYQRFLGRELEVLFEQEQDGYMEGLTSNYIRVYIKNDGEITSGDIR 416
Query: 461 LVKITSVGRWSVFGEVI 477
LVK+ + + + GE+I
Sbjct: 417 LVKLVKLFKDGILGELI 433
>gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304]
gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 405
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 202/361 (55%), Gaps = 21/361 (5%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+A++ +IN+C V ++ + + K K +V+AGC+ + S++ + S +
Sbjct: 15 EDAEVVIINSCGVIDFTERKIIRRMLDLKREGKKVVLAGCLTRISKEALSVAD-SALSPD 73
Query: 154 QIDRVVEVVEETLKGH----EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
+D VV+ V L G E R + + + L ++R N + I+ I+ GCLG C++C
Sbjct: 74 NLDMVVDAVYSALNGRKLFTERRFIDKAEFSHLKC-RLRENA-IAIVSISEGCLGKCSFC 131
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268
TK ARG L S++++++V + G +E+ L+S+DTGAYG D G LP LL I +
Sbjct: 132 ATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYGMDKGRAMLPELLRKI-S 190
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
E+ +G +R+GM NP + L E+ +Y FLH+PVQSG + +L M R +T
Sbjct: 191 EI--EGEFRVRVGMMNPQHAVRMLDELINAYSSEKIYKFLHIPVQSGDNRILEDMKRNHT 248
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ D+ VV+ + I+TDII GFP ET+E F ++ LIKE + V+I+++ R
Sbjct: 249 VEDYVEVVEAFRNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIVNITRYSARK 308
Query: 389 GTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME------GRVERIWITEIAADGIHL 442
GTPAAR++ +P + K+RSR+LT + +G+E G+ R+ +T+ +G +L
Sbjct: 309 GTPAARLRDIPGWIKKERSRKLTDLMRK----IGLENNKRFVGKKLRVLVTKEGKNGRNL 364
Query: 443 G 443
Sbjct: 365 A 365
>gi|390938904|ref|YP_006402642.1| MiaB family RNA modification protein [Desulfurococcus fermentans
DSM 16532]
gi|390192011|gb|AFL67067.1| RNA modification enzyme, MiaB family [Desulfurococcus fermentans
DSM 16532]
Length = 432
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 202/374 (54%), Gaps = 36/374 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M + G+ L ++ E+AD ++INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKSDEALMVESILREGHVLVNSIEDADTFIINTCIVRLDTEYHMVKRIRE 62
Query: 121 CKSAK----KPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K L+VAGC+ + LK S+V Q + EV++
Sbjct: 63 LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT---------- 112
Query: 175 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R K+ +D + R + + +PI GCL C++C TKHAR L S++++++V
Sbjct: 113 -RGKIVLIDGLRERDRIGIHVEDRIAPIPIQEGCLSDCSFCITKHARRILVSHSIDAVVK 171
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V + +G E+ L+ D G YG D+ LP L+ + + G M+RIGM NP
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMVRIGMINP- 228
Query: 287 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
EHL+ I + L VY FLH+P+QSGS+ VLS M R Y++ ++ +V+ +
Sbjct: 229 ---EHLRHILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEVKS 285
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
+PG+ IATDII G P E +EDF++T+ +I+E +F +VH++ + RP T +A + +VP+
Sbjct: 286 RIPGVSIATDIIVGHPMEDEEDFSETLKVIRELEFERVHLAGYSIRPLTYSASLPQVPTR 345
Query: 402 VVKKRSRELTSVFE 415
V K+R V E
Sbjct: 346 VKKERVLRALQVIE 359
>gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|448290728|ref|ZP_21481874.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|445578099|gb|ELY32514.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
Length = 429
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 222/436 (50%), Gaps = 51/436 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L++ GC+ QG+ D +E +G + ++LH +
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-----------------------EGIDAQILHWDDV 100
Query: 180 PALDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
PA P V + V ILPI GC+ C+YC TK A G + S +V+ V +
Sbjct: 101 PAAVTNGECPTPGPGVEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R ++ G KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP +
Sbjct: 161 ARALVHAGAKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGV 218
Query: 289 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E+A V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T +
Sbjct: 219 HGIRDELAAVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWT 278
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
++TD I G+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS
Sbjct: 279 LSTDFIVGYPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERS 338
Query: 408 RELTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVP-STGNMLGT 458
+E++ V A+ +G E V + + E D + Y Q++V +T + L
Sbjct: 339 KEMSEAKMDIVAAAYDEMVGTERDV--LVVEEGTGDSVKCRDEAYRQIIVQNATEHGLEP 396
Query: 459 SALVKITSVGRWSVFG 474
++T +V+
Sbjct: 397 GDFARVTVTAHQTVYA 412
>gi|448569031|ref|ZP_21638443.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
gi|445725181|gb|ELZ76806.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
Length = 429
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 222/428 (51%), Gaps = 35/428 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVP-STGNMLGTSALVKITS 466
V A+ +G E V + + E D + Y Q++V +T + L ++T
Sbjct: 347 DIVAAAYDEMVGTERDV--LVVEEGTGDSVKCRDEAYRQIIVQNATEHGLEPGDFARVTV 404
Query: 467 VGRWSVFG 474
+V+
Sbjct: 405 TAHQTVYA 412
>gi|448339730|ref|ZP_21528742.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
gi|445619146|gb|ELY72691.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
Length = 417
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 134/405 (33%), Positives = 214/405 (52%), Gaps = 30/405 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E + + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL AI DG +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E+++
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDL 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGN 454
V +A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 348 VADAYADMVG-EVREDVLVVEEGTADSVKCRDSAYRQLIVQNASD 391
>gi|448634564|ref|ZP_21674962.1| MiaB-like tRNA modifying enzyme [Haloarcula vallismortis ATCC
29715]
gi|445749537|gb|EMA00982.1| MiaB-like tRNA modifying enzyme [Haloarcula vallismortis ATCC
29715]
Length = 427
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 139/446 (31%), Positives = 221/446 (49%), Gaps = 58/446 (13%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +++ + L G+ D E AD+ ++NTCTV ++ M +A+
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPEAADVAILNTCTVLEKTERNM---LARA 61
Query: 122 KSAKKP----LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
K K LV+ GC + QG +E + I + +LH
Sbjct: 62 KELDKETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLH 97
Query: 176 RKKLPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+P L P N V ILPI GC+ C+YC TK A G + S +VE
Sbjct: 98 WDDVPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEE 157
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGM 282
V + R ++ G KE+ ++ +DTG YG D LP LL+ I ++ DG +R+GM
Sbjct: 158 NVEKARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICTDI--DGDFRVRVGM 215
Query: 283 TNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
NP + +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL +
Sbjct: 216 ANPKGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDD 275
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
+ ++TD I GFP E D +++ L++E + ++++++F RPGT AA MK +
Sbjct: 276 QLEYWTLSTDFIVGFPTEEPADHEESMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQ 335
Query: 402 VVKKRSRELTSVFEAF--TPYLGMEGRVERIWITEIAAD----GIHLGYVQVLVPST--- 452
K RS+E++ Y M GR + + E D G Y QV++
Sbjct: 336 TKKDRSKEMSEAKMELMAEAYEEMVGRTSSVLLVEDGTDESLVGYDEAYRQVVIADAQER 395
Query: 453 GNMLGTSALVKITSVGRWSVFGEVIK 478
G +G + V+ITS FGE I+
Sbjct: 396 GLEIGDTVDVEITSHNTVYAFGEPIE 421
>gi|217076413|ref|YP_002334129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus TCF52B]
gi|229891011|sp|B7IFC4.1|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
TCF52B]
Length = 429
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 232/440 (52%), Gaps = 33/440 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KT+GC N++DSE L GY +N EADI ++NTC V+ ++ + I +
Sbjct: 3 FFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG + +
Sbjct: 63 LRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD- 118
Query: 177 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
KL +D + R +K + I GC CTYC + RG S ++ ++ V+ +
Sbjct: 119 DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDILREVKNLS 178
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI-GMTNPP--FIL 289
+GV+E+ ++ AYG+D+ G +L LLN + RI +T+ P F L
Sbjct: 179 LNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKKIENIERIWFLTSYPTDFSL 233
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ +EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP I+
Sbjct: 234 DIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVPDASIS 290
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKRS 407
+DII GFP ET++DF QTV L++E KF +++++ + PR GT A + VP A+ +R
Sbjct: 291 SDIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREGTIAWKYFEDNVPRAIKTRRM 350
Query: 408 RELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLG--YVQVLVPSTGN--MLGTSA 460
L ++ + L ++ VE I + E A G+ G ++ G+ ++G
Sbjct: 351 AYLLNLQKEINKMLNESYLDKTVEVI-VEERAKSGLFYGRDIRNKIIAFEGDESLIGKKI 409
Query: 461 LVKITSVGRWSVFGEVIKIL 480
LVKI ++G++IKI+
Sbjct: 410 LVKIKKTTAGPLYGDIIKII 429
>gi|403252571|ref|ZP_10918880.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
gi|402812061|gb|EJX26541.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
Length = 434
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 224/432 (51%), Gaps = 33/432 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
++ K +++ GC Q S D K L I+G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMILGIDEKKHIVDHIN-SLNGKQQVVVS 119
Query: 176 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 231
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G KE+ ++ + G YG+D+G +L LL IV E+P G +R+ N + +
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND- 233
Query: 292 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I T
Sbjct: 234 --EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITT 291
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAV 402
DII GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V
Sbjct: 292 DIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDV 351
Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS--TGNMLGTSA 460
+K+++++++ + +G E +V W G+ GY + V GN +G
Sbjct: 352 LKEKAKDVSIRYRKRI--IGKERKVLAEWYV---MKGVLSGYDEYYVKHEFVGNRVGEFH 406
Query: 461 LVKITSVGRWSV 472
V++ S+ V
Sbjct: 407 SVRVKSLSEEGV 418
>gi|333980035|ref|YP_004517980.1| MiaB family RNA modification protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333823516|gb|AEG16179.1| RNA modification enzyme, MiaB family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 445
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/442 (33%), Positives = 219/442 (49%), Gaps = 33/442 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ + T GC NQ +S +A GY + D SE ADI++INTCTV LI
Sbjct: 13 TVAVTTLGCKVNQYESAALATLFRERGYKVVDFSEAADIYVINTCTVTHLGDRKSRQLIR 72
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ + +VV GC Q S ++ + GV +VG + R+V++VEE E L
Sbjct: 73 RATRNNPHARVVVTGCYAQTSPEEVLSIPGVDLVVGTRDKSRIVDLVEELESRKEGPLAV 132
Query: 175 --------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++LP LP ++ L I GC C YC +ARG L S E++
Sbjct: 133 VRDVFADQDYEELPVPALP----SRVRAFLKIQEGCNNFCAYCIIPYARGPLRSRDPENV 188
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ R ++A G KE+ L+ TGAYG+D G +L L+ + AE+P G LR+
Sbjct: 189 LAEARRLVAGGFKELVLTGIHTGAYGQDRPGGPDLAGLVECL-AEIP--GLVRLRLSSVE 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P I L +I P V LH+P+QSG D VL+ M R YT + FR +V + VP
Sbjct: 246 PMDITGKLVDIMAT--RPNVCRHLHIPLQSGDDTVLARMRRHYTTAWFRELVQRVRGCVP 303
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
G+ I TDII GFPGETD F T N ++E F ++H+ ++ PR GT AA SA VK
Sbjct: 304 GIAITTDIIVGFPGETDGQFENTFNFVREMAFARLHVFKYSPRQGTEAASFPDQISAPVK 363
Query: 405 K-RSRELTSVFEAFTPYLGME--GRVERIWITEIAAD------GIHLGYVQVLVPSTGNM 455
+ RSR + ++ + + GR ++ + E + G+ Y++V+ P+ N
Sbjct: 364 EARSRRMIALGDELARSFAAKHIGREVQVLVEEELPEKAGFFAGLTDNYLRVIFPARKNP 423
Query: 456 LGTSALVKITSVGRWSVFGEVI 477
+G V++ + + G +I
Sbjct: 424 VGELVTVRVEEIEGADLKGMII 445
>gi|448667822|ref|ZP_21686190.1| MiaB-like tRNA modifying enzyme [Haloarcula amylolytica JCM 13557]
gi|445769143|gb|EMA20219.1| MiaB-like tRNA modifying enzyme [Haloarcula amylolytica JCM 13557]
Length = 427
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 220/444 (49%), Gaps = 54/444 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +++ + L G+ D E AD+ ++NTCTV ++ M +A+
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNM---LARA 61
Query: 122 KSAKKP----LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K LV+ GC+ L + E V + +LH
Sbjct: 62 KELDKETPADLVITGCMA-----LAQGEEFQTADV-----------------DAEVLHWD 99
Query: 178 KLPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+P L P N V ILPI GC+ C+YC TK A G + S +VE V
Sbjct: 100 DVPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENV 159
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTN 284
+ R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM N
Sbjct: 160 EKARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMAN 217
Query: 285 PPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + +E+A V +H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL + +
Sbjct: 218 PKGLHGVREELARVFAKHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDHL 277
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
++TD I GFP E D Q++ L++E + ++++++F RPGT AA MK +
Sbjct: 278 DYWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTK 337
Query: 404 KKRSRELTSVFEAF--TPYLGMEGRVERIWITEIAAD----GIHLGYVQVLVPST---GN 454
K RS+E++ Y M G + + E D G Y QV++ G
Sbjct: 338 KDRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDESLVGYDEAYRQVVIADAQERGL 397
Query: 455 MLGTSALVKITSVGRWSVFGEVIK 478
+G + V+ITS FGE ++
Sbjct: 398 EIGDTVDVEITSHNTVYAFGEPVE 421
>gi|257791365|ref|YP_003181971.1| MiaB family RNA modification protein [Eggerthella lenta DSM 2243]
gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
Length = 459
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 220/450 (48%), Gaps = 40/450 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+AD+ TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 69 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
H+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 129 EGSHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ ++TDII GFPGET +DF T L+ E + QV + R GTPAA M P V++
Sbjct: 305 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 364
Query: 405 KRSRELTSV-----FEAFTPYLG------MEG---RVERIWITEIAADGIHLGYVQVLVP 450
+R L + FEA LG +EG R ER+ +A V P
Sbjct: 365 QRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERL----LAGKSPKNQTVHAPAP 420
Query: 451 S---TGNMLGTSALVKITSVGRWSVFGEVI 477
+ ++ G++ V++ W + GE++
Sbjct: 421 AGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450
>gi|397906230|ref|ZP_10507046.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Caloramator australicus RC3]
gi|397160689|emb|CCJ34381.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Caloramator australicus RC3]
Length = 433
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 139/421 (33%), Positives = 218/421 (51%), Gaps = 32/421 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
T GC N ++E MA GY + D + AD+++INTCTV + +I AK K
Sbjct: 8 TLGCRVNTYETEAMAETFIKNGYEVVDFDDYADVYVINTCTVTNIGDKKSRQMIRRAKKK 67
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKG-----HEVRLLH 175
+ +V GC Q +++++E V I VG + ++VE V+E LK H ++
Sbjct: 68 NNDAVVVAVGCYVQVAPEEVEKIEDVDIIVGTKDKGKIVEFVDEYLKNRKRIKHVENVMS 127
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ L++ + + +K L I GC C+YC +ARG + S E+++ V +
Sbjct: 128 IRHFEELEIDEYQ-DKTRAFLKIQDGCDRFCSYCLIPYARGPVRSRKPENILMEVEKLSR 186
Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----ILE 290
+G KEV LS +YG+D+ VNL ++ I +G +RIG +P F I+E
Sbjct: 187 NGYKEVILSGIHVASYGKDLKDVNLIDVIEMIS---KVEGIERIRIGSVDPTFFNEEIIE 243
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
LK I + H H+ +QSG D L MNR YT S+++ +VD L E+ + I T
Sbjct: 244 KLKYIDKFCHH------FHLSLQSGCDETLRRMNRHYTTSEYKKIVDNLREVFEDVSITT 297
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
D+I GFPGETDE+F +T +KE K ++HI ++ PR GT AA K +VP ++ ++RS++
Sbjct: 298 DVIVGFPGETDEEFERTFEFLKEIKLSKMHIFKYSPRKGTKAAEYKNQVPESIKEERSKK 357
Query: 410 LTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVK 463
L + + EG+V + E +G + G Y++V V S ++ G VK
Sbjct: 358 LIELDKILEHEFIKKHEGKVMDVLFEE-YKEGYNWGYTKNYIRVGVESQRDLSGEIINVK 416
Query: 464 I 464
I
Sbjct: 417 I 417
>gi|210623865|ref|ZP_03294100.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
gi|210153291|gb|EEA84297.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
Length = 432
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 220/436 (50%), Gaps = 34/436 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY + E AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMIELFEHAGYEHVQSEEYADVYVINTCTVTHMSDRKSRQYIRRVKK- 66
Query: 125 KKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K P + V GC Q ++ ++E V++V G +VE VE +V +
Sbjct: 67 KNPNSVIAVVGCYSQVAPEEILDIEEVNLVMGTNDRRHIVEKVEAVTCNDKVSTVD---- 122
Query: 180 PALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
D+ KV+ + +EI + I GC CTYC +ARG + S ++++V
Sbjct: 123 ---DIMKVKEFEEIEITQTNGRTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDLDNIVEE 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FI 288
V+ + + G KEV L+ +YG+DI LL+ I A DG +R P F
Sbjct: 180 VKLLASKGYKEVVLTGIHVASYGKDIKDKEVKLLDVIKAVNEIDGIERIRTSSVEPILFT 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E ++EI+++ + V H+ +QSG DA L MNR YT +++ +VD L E +P + I
Sbjct: 240 DEFVEEISKMNK---VCPHFHLSLQSGCDATLDRMNRRYTTKEYKEIVDRLREKMPDVAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TD+I GFPGET+E+F QT +K+ + Q+HI ++ PR GTPAA+M ++ V RS
Sbjct: 297 TTDVIVGFPGETNEEFKQTYEFLKDIELAQMHIFKYSPRKGTPAAKMDNQIDPQVKHMRS 356
Query: 408 RELTSV----FEAFTP-YLGMEGRVERIWITEIA-ADGIHLGYVQVLVPSTGNMLGTSAL 461
+L S+ F+ F ++G E V T+ +G+ + Y++V PS ++ G
Sbjct: 357 EQLISLSKNNFDKFAERFIGREMDVLFEETTKSGNYEGLTMNYMRVEAPSEEDISGQIRK 416
Query: 462 VKITSVGRWSVFGEVI 477
VKIT + V G +I
Sbjct: 417 VKITGIKEDYVEGVLI 432
>gi|347753157|ref|YP_004860722.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347585675|gb|AEP01942.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 450
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 226/446 (50%), Gaps = 28/446 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E M GY TD AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAMWQLFKKAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ E+ GV +V G Q +++ +E+ LK +
Sbjct: 63 RAVRQNPDAVVCVTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + +++P ++ L I GC CT+C ARG + S E ++ +
Sbjct: 123 KNIMKNRVYEEMEVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG+D+ NL +LL + E G +RI +
Sbjct: 182 QKLVNAGYKELVLTGIHTGGYGQDLKDYNLAMLLKDL--EEKVQGLKRVRISSIEASQLT 239
Query: 290 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ +V++H V +HVP+QSGSD VL M R+YT+ F + L E +PG+ +
Sbjct: 240 D---EVIDVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE++F ++H+ + PR GTPAARMK ++ + +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQIDEEIKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWI------TEIAADGIHLG----YVQVLVPSTGNMLG 457
+ ++ + + E + + E G++ G Y++V+ P+T +M+G
Sbjct: 357 HRMIALSDQLAKEYASQFENEVLEVIPEEPFKEDPESGLYEGYTDNYLKVVFPATPDMVG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQV 483
VKIT G + +++++ V
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVMDDV 442
>gi|365154971|ref|ZP_09351367.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
gi|363628896|gb|EHL79597.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
Length = 514
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 224/438 (51%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG L GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGILMQLGYEPTDQPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K KP L V GC+ Q ++ LK+ + V +V G I R+ ++ E E
Sbjct: 131 LKPLKMEKPDLLLGVCGCMSQEESVVNKLLKQYQYVDMVFGTHNIHRLPHILNEAYMAKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVVENLPKVRQGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ +L +R ++P
Sbjct: 251 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDMEYGLGDLMDDLRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + + +P + +
Sbjct: 310 DDHLIEV--LAKKGNLMEHIHLPVQSGSSEILKIMARKYTREQYLELVRKIKKAIPDVAL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ET+E F +T++L++E F + + PR GTPAA+MK VP V K+R
Sbjct: 368 TTDIIVGFPNETEEQFEETLSLVREVGFESAYTFIYSPREGTPAAKMKDNVPMEVKKERL 427
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + EG++ + + + + + GY + LV G + +G
Sbjct: 428 QRLNELVNELSAKAMKKYEGKIVEVLVEGESKNNPDVLAGYTRRNKLVNFKGPKSAIGQI 487
Query: 460 ALVKITSVGRWSVFGEVI 477
VKIT W++ GE++
Sbjct: 488 VKVKITEAKTWTLNGEMV 505
>gi|448641016|ref|ZP_21677803.1| hypothetical protein C436_13580 [Haloarcula sinaiiensis ATCC 33800]
gi|445761541|gb|EMA12789.1| hypothetical protein C436_13580 [Haloarcula sinaiiensis ATCC 33800]
Length = 427
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 139/446 (31%), Positives = 223/446 (50%), Gaps = 58/446 (13%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +++ + L G+ D E AD+ ++NTCTV ++ M +A+
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNM---LARA 61
Query: 122 K--SAKKP--LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
K ++ P LV+ GC + QG +E + I + +LH
Sbjct: 62 KELDSETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLH 97
Query: 176 RKKLPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+P L P N V ILPI GC+ C+YC TK A G + S +VE
Sbjct: 98 WDDVPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEE 157
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGM 282
V + R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM
Sbjct: 158 NVEKARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGM 215
Query: 283 TNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
NP + +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL +
Sbjct: 216 ANPKGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDD 275
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
+ ++TD I GFP E D Q++ L++E + ++++++F RPGT AA MK +
Sbjct: 276 QLDYWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQ 335
Query: 402 VVKKRSRELTSVFEAF--TPYLGMEGRVERIWITEIAAD----GIHLGYVQVLVPST--- 452
K RS+E++ Y M G + + E D G Y QV++
Sbjct: 336 TKKDRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDESLVGYDEAYRQVVIADAQER 395
Query: 453 GNMLGTSALVKITSVGRWSVFGEVIK 478
G +G + V+ITS FGE I+
Sbjct: 396 GLEIGDTVDVEITSHNTVYAFGEPIE 421
>gi|448679050|ref|ZP_21689887.1| MiaB-like tRNA modifying enzyme [Haloarcula argentinensis DSM
12282]
gi|445771148|gb|EMA22205.1| MiaB-like tRNA modifying enzyme [Haloarcula argentinensis DSM
12282]
Length = 427
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 220/446 (49%), Gaps = 58/446 (13%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +++ + L G+ D E AD+ ++NTCTV ++ M +A+
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNM---LARA 61
Query: 122 KSAKKP----LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
K LV+ GC + QG +E + I + +LH
Sbjct: 62 KELDNETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLH 97
Query: 176 RKKLPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+P L P N + ILPI GC+ C+YC TK A G + S +VE
Sbjct: 98 WDDVPQYVLNGECPTITPDTETVLNGVIGILPIARGCMSDCSYCITKQATGRIESPSVEE 157
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGM 282
V + R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM
Sbjct: 158 NVEKARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGM 215
Query: 283 TNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
NP + +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL +
Sbjct: 216 ANPKGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDD 275
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
+ ++TD I GFP E D Q++ L++E + ++++++F RPGT AA MK +
Sbjct: 276 HLDYWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQ 335
Query: 402 VVKKRSRELTSVFEAF--TPYLGMEGRVERIWITEIAAD----GIHLGYVQVLVPST--- 452
K RS+E++ Y M GR + + E D G Y QV++
Sbjct: 336 TKKDRSKEMSEAKMELMAEAYEEMVGRTSSVLLVEDGTDESLVGYDEAYRQVVIADAQER 395
Query: 453 GNMLGTSALVKITSVGRWSVFGEVIK 478
G +G + V ITS FGE ++
Sbjct: 396 GLEIGDTVEVAITSHNTVYAFGEPVE 421
>gi|218884393|ref|YP_002428775.1| MiaB family RNA modification protein [Desulfurococcus kamchatkensis
1221n]
gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
1221n]
Length = 432
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 36/374 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M + G+ L ++ E+AD +INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKSDEALMVENILREGHELVNSIEDADTLIINTCIVRLDTEYHMVKRIRE 62
Query: 121 CKSAK----KPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K L+VAGC+ + LK S+V Q + EV++
Sbjct: 63 LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT---------- 112
Query: 175 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R K+ +D + R + + +PI GCL C++C TKHAR L S+ ++++V
Sbjct: 113 -RGKVILIDGLRERDRIGIHVEDRIAPIPIQEGCLSNCSFCITKHARRILVSHGIDAVVK 171
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V + +G E+ L+ D G YG D+ LP L+ + + G M+RIGM NP
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMIRIGMINP- 228
Query: 287 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
EHL+ I + L VY FLH+P+QSGS+ VLS M R Y++ ++ +V+
Sbjct: 229 ---EHLRYILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEAKS 285
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
+PG+ IATDII G P E +EDFN+T+ +I+E +F +VH++ + RP T +A + +VP+
Sbjct: 286 RIPGVSIATDIIVGHPMEDEEDFNETLKVIRELEFERVHLAGYSIRPLTYSASLPQVPTR 345
Query: 402 VVKKRSRELTSVFE 415
V K+R V E
Sbjct: 346 VKKERVLRALQVIE 359
>gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
Length = 451
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 197/371 (53%), Gaps = 19/371 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ Y+ T+GC N+ DSE + G L A G TD E+++I + TC V+ + + +
Sbjct: 9 SFYVFTYGCQMNEHDSERIVGMLEACGAHRTDVFEDSEIVIFMTCCVREAADVRLRGQVN 68
Query: 120 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ K+ + + GC+ Q G + + ++ V +V G Q I+R+ ++ L
Sbjct: 69 SIKNVPLPRTSELKKRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLPYLINGVLS 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH + + DLP R + + LPI VGC CTYC + RG S +ES
Sbjct: 129 RGGHIAEVQEESDTFSTDLPSKREHDWAAWLPITVGCNNFCTYCIVPYVRGRERSRAIES 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V + ++A+GV+E+ L ++ +YGRD+ P + ++ + G LR ++P
Sbjct: 189 VVADAQALVAEGVQEITLLGQNVNSYGRDL-YGEPRFAD-VLKGVAATGVPRLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + E L + + LH+PVQSGSDA+L M+R YT+ + ++D L P
Sbjct: 247 KDLTDEVIEAFGTLGN--LMPALHLPVQSGSDAILKRMHRSYTVEHYLGLIDKLRAACPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ ++TDII GFPGET+EDF T +L+++ + QV + PR GTPAA+MK P +V++
Sbjct: 305 ISLSTDIIVGFPGETEEDFQATYDLVEKVGYSQVFTFIYSPREGTPAAKMKDDTPRSVIQ 364
Query: 405 KRSRELTSVFE 415
+R L + +
Sbjct: 365 ERFERLVQMVQ 375
>gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
gi|169293404|gb|EDS75537.1| tRNA methylthiotransferase YqeV [Clostridium spiroforme DSM 1552]
Length = 428
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 219/425 (51%), Gaps = 25/425 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TI T GC N +S M + GY D E AD+++INTCTV + S +I
Sbjct: 2 KTIAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKEIADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHEV-- 171
K K+ + + VAGC Q +++++EGV +V G Q +V+ V+E LK G V
Sbjct: 62 RKAIRKNPQATVCVAGCYSQIAPEEIEQIEGVGVVLGTQHRKDIVKYVDEYLKTGKPVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ KK L++ + + + L I GC CTYC +ARG + S +S++ +
Sbjct: 122 VDNVMNLKKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRDKDSVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+T++A+G E+ L+ T YG D+ N + +V + DG LRI I
Sbjct: 180 AKTLVANGYVEIVLTGIHTAGYGEDLD-NYS-FYDLLVDLVKIDGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + I + + + LH+P+QSG DA L MNR+YT S + ++ + +P +
Sbjct: 238 DEI--INLIGSNDIIVDHLHIPLQSGCDATLKRMNRKYTTSQYLEKINKIRNYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TD+I GFPGE+DE+F +T N IKE + ++H+ + R TPAA+MK +V + +R
Sbjct: 296 TDVIVGFPGESDEEFEETYNFIKEVNYSELHVFPYSLRRNTPAAKMKDQVDDKIKHERVN 355
Query: 409 ELTSVFEAFTPYLGME--GRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSAL 461
L + + ++ G++ ++ + DG +L Y++V V +T N++G
Sbjct: 356 RLLELSKKLNRDFALKQIGKILKVLFEK--RDGDYLVGHASDYLKVKVKTTDNLIGEIVE 413
Query: 462 VKITS 466
VKI +
Sbjct: 414 VKINN 418
>gi|220932005|ref|YP_002508913.1| MiaB family RNA modification protein [Halothermothrix orenii H 168]
gi|219993315|gb|ACL69918.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
Length = 450
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/441 (29%), Positives = 218/441 (49%), Gaps = 32/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ T+GC N DSE +AG L GY T+N EEADI ++NTC V+ ++ + +
Sbjct: 7 FILTYGCQMNVHDSEKLAGMLEEMGYKSTNNLEEADIIMVNTCAVRENAELRVFGRVGDF 66
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE--ETLKGH 169
K K+ + V GC+ Q + ++L I G I + E+++ + +G
Sbjct: 67 KRLKEKNPDLIIGVGGCMMQIDENARKLYEKYPHVDLIFGTHNIHHIPELIKRIKEERGR 126
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + ++++ D+P R + F + I GC CTYC + RG S ++
Sbjct: 127 IIEVWNQEEGLIPDIPYKREDDFKAWISIIQGCNNFCTYCIVPYVRGRERSRPAADIISE 186
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + ++GVKE+ L ++ +YG+D+ ++ LL + +G +R ++P
Sbjct: 187 ARKLASEGVKEITLLGQNVNSYGKDLKEDIDFADLLKRLNR---VEGIKRIRYMTSHPRD 243
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + +I + C + H+PVQSGS +L MNR YT +++ ++ + +P
Sbjct: 244 FSDKMIKIIKECDKVCEH--FHLPVQSGSTRILKKMNRGYTQAEYLNLIKKIKSQIPDYS 301
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
I TDII GFPGET+EDF +T+ +I+E +F + ++ PR GTPAAR K S +K+
Sbjct: 302 ITTDIIVGFPGETEEDFQETLKVIREVRFDMAYTFKYSPRKGTPAARHKDQVSEKIKQDR 361
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPSTGNML 456
LT + E R + E+ +G G + V+VP N+
Sbjct: 362 --LTRLIEVQNSISLENNRKLKGKTVEVLIEGESRNNPDTFEGRTRTNKLVIVPRNENLK 419
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G A VKI VG W+++GEVI
Sbjct: 420 GQIANVKINRVGSWTLYGEVI 440
>gi|427414218|ref|ZP_18904408.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
gi|425714594|gb|EKU77597.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
Length = 433
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 206/401 (51%), Gaps = 22/401 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G GY D E+ADI++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMRGLFIQSGYTPVDFDEKADIYVINTCSVTNMGERKSRQLI 61
Query: 119 AKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
K K + ++V GC Q + ++GV++V G RVVE+VE+ L+ E
Sbjct: 62 RKAKRTNEDAYIIVTGCYAQLAPEAIATIDGVNLVIGTNNRHRVVELVEQ-LESTEKQIS 120
Query: 171 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
VR ++ + + L +K + I GC CT+C + RG L S VE +V
Sbjct: 121 IVRNIMEQATFEEMPLYGNEIDKARAFMKIQEGCNNYCTFCIIPYTRGKLKSRRVEDIVK 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ ++ G E+ L+ G YG ++ + P L + + A L G +R+G +
Sbjct: 181 EAKRLVEHGYHEIVLTGIHLGNYGIEL-LEKPNLAHVVKALLEIPGLERIRLGSIESVEV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E L ++ + + P + LH+P+Q+GSD +L MNR Y L +F+ ++ L +PG+ I
Sbjct: 240 SEELVDL--MAKDPRFCTHLHLPLQAGSDHILKLMNRHYNLQEFKDLIARLRSRIPGLAI 297
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFPGETDEDF +T+ ++E F +H + R GTPAA M+ +VP AV K R
Sbjct: 298 TTDIIAGFPGETDEDFEETMRTVEEIGFTHIHAFPYSKREGTPAATMEDQVPEAVKKTRV 357
Query: 408 RELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLGY 444
L S+ + F M G+ I I E DG +LG+
Sbjct: 358 ALLNSLGQKGLQKFAEQ--MIGKPAEILI-EREEDGYYLGF 395
>gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 437
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 196/363 (53%), Gaps = 39/363 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N ++ YM Q GY + D SEEADI+++NTCTV S + S + K KS
Sbjct: 8 TLGCKMNFHETAYMEEQFKKRGYKIVDFSEEADIYIVNTCTVTSVADSKSRKALRKAKSR 67
Query: 125 K-KPLVVA-GCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LVVA GC P+ L+E++ I G + ++V++VE+ ++G K
Sbjct: 68 NPKALVVATGCYSEVYPEKVEKLEEVD--FITGNVEKFQIVDIVEKRIEG---------K 116
Query: 179 LPALDLPKV-RRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVES 225
LP L L + + N+F + L I GC C+YC ARG + S E
Sbjct: 117 LPRLYLRGIWKENQFYPLTIRHYEGKTRAFLKIQQGCELFCSYCIIPKARGKMLSEKPEK 176
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ +V+ +I G KE+ L+ G YG D+ ++L L+ IV ++P G LRI
Sbjct: 177 VLEQVKELINSGYKEIVLTGTHLGGYGLDLEESLSLAKLIEKIV-KIP--GLYRLRISSV 233
Query: 284 NPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
P +E E+ EV+ P + LH+P+QSGSD +L+ M R YT D++T+V+ ++
Sbjct: 234 EP---IEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKRRYTKRDYKTIVERILSK 290
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
P + I TD++ GFPGET+EDF +T IKE+ F +H+ + PR GT A +MK S++
Sbjct: 291 NPDICIGTDVMVGFPGETEEDFEETKKFIKEFPFGYIHVFPYSPRKGTVAYKMKDSVSSL 350
Query: 403 VKK 405
KK
Sbjct: 351 EKK 353
>gi|448396870|ref|ZP_21569318.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
gi|445673399|gb|ELZ25960.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
Length = 417
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 220/431 (51%), Gaps = 33/431 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A DG +R+GM NP I +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEKICA---IDGDFRVRVGMANPKGIHGIREELADV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VVDT + + ++TD I GFP
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVLGDMRRQHQVQEYLEVVDTFDDTLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E++
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSDLKRDL 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V +A+ +G R + + + E AD + Y Q++V + G G ++IT+
Sbjct: 348 VADAYAEMVGQR-RDDCLVVEEGTADSVKCRDSAYRQIIVQNASEHGLEPGDFVDLEITA 406
Query: 467 VGRWSVFGEVI 477
FG+ +
Sbjct: 407 HETMYAFGDPV 417
>gi|397775943|ref|YP_006543489.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
gi|397685036|gb|AFO59413.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
Length = 417
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/406 (32%), Positives = 214/406 (52%), Gaps = 32/406 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC + QG + D +++G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I DG +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGDRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V H +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GF
Sbjct: 227 VFAEHDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P ET+ D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E+++
Sbjct: 287 PSETERDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRD 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGN 454
V +A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 347 LVADAYADMVG-EVREDVLVVEEGTADSVKCRDSAYRQLIVQNASD 391
>gi|294102364|ref|YP_003554222.1| MiaB family RNA modification protein [Aminobacterium colombiense
DSM 12261]
gi|293617344|gb|ADE57498.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
DSM 12261]
Length = 440
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 225/442 (50%), Gaps = 30/442 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+K +GC N D + + L G+ T + EEADI + N C++++ ++ + + + +
Sbjct: 6 LKVYGCQMNVYDGDKLRTALIRNGWQET-SEEEADIVIFNGCSIRAKAEHKVWSELGRYG 64
Query: 123 SA----KKPLV-VAGCVPQ--GSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLL 174
+ KKP V V GC+ Q GS + V +VG + I + E +E + G V LL
Sbjct: 65 ESWSDKKKPFVAVTGCIAQRLGSAMMTRFPWVRLVGGPRHIGDLPEALERVMAGERVSLL 124
Query: 175 HRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+DL P R N + + I GC CTYC + RG S E ++ +R
Sbjct: 125 DEDSRAFVDLAVPPIERVNPWKAYVTIAHGCDNFCTYCIVPYVRGRFVSRFPEDILVEIR 184
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ DGVKE+ L ++ +YG+D G LL + A DG ++R ++P
Sbjct: 185 GLVEDGVKEITLLGQNVNSYGQDFKNGYTFSSLLRDVAA---IDGLPLIRFVTSHPK--- 238
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ +I EV+ HP + +++P+QSGSD +L MNR+YTL+ +R V + +P + +
Sbjct: 239 DFTPDIVEVMAHHPKICPSINLPIQSGSDRILKKMNRKYTLAKYRETVSVIRNALPEVGL 298
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+EDF +V + E+++ VH + + PR GT A+ M+ ++ V KR
Sbjct: 299 TSDLIVGFPGETEEDFQASVAALHEFRYDLVHTAAYSPREGTAASTMEDQIDQDVKMKRL 358
Query: 408 RELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHL------GYVQVLVPSTGNMLGTS 459
+ +V A G+ G+ +I I + A G L G V++ T +G
Sbjct: 359 NTVNAVQSEIALQINRGLVGKRYKILIDDWAPKGESLVQGRTPGDKVVIMEGTEEFIGRF 418
Query: 460 ALVKITSVGRWSVFGEVIKILN 481
ALV ITS W + GEVI I++
Sbjct: 419 ALVSITSAENWCLHGEVISIID 440
>gi|170287904|ref|YP_001738142.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
gi|170175407|gb|ACB08459.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
Length = 434
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 224/432 (51%), Gaps = 33/432 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPGGD-ASYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
++ + +++ GC Q S D + L I+G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPDEARNLPVDMILGIDEKKNIVDHIN-SLNGKQQVVVS 119
Query: 176 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 231
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G KE+ ++ + G YG+D+G +L LL IV E+P G +R+ N + +
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND- 233
Query: 292 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I T
Sbjct: 234 --EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITT 291
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAV 402
DII GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V
Sbjct: 292 DIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDV 351
Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS--TGNMLGTSA 460
+K+++++++ + +G E +V W G+ GY + V GN +G
Sbjct: 352 LKEKAKDVSIRYRKRI--IGKERKVLAEWYV---MKGVLSGYDEYYVKHEFVGNRVGEFH 406
Query: 461 LVKITSVGRWSV 472
V++ S+ V
Sbjct: 407 SVRVKSLSEEGV 418
>gi|448464159|ref|ZP_21598382.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
gi|445815946|gb|EMA65863.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
Length = 440
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 218/431 (50%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ + E GV +I EV L G E +
Sbjct: 63 ELEDETAELVVTGCMALAQGETFEEAGVD----AEILHWDEVPSYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+ EV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELVEV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP
Sbjct: 228 FADNEELYDFVHAPVQSGSDEVLEEMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ET+ D ++++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 288 TETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKMEV 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V EA+ +G E + + E D + Y Q++V + G +G V++T
Sbjct: 348 VGEAYESMVGE--TFEVLVVEEGTGDSVKCRDGAYRQIIVQNATERGVDVGDFLEVEVTG 405
Query: 467 VGRWSVFGEVI 477
FG+ +
Sbjct: 406 HNTVYAFGDPV 416
>gi|432332038|ref|YP_007250181.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
gi|432138747|gb|AGB03674.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
Length = 418
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 195/370 (52%), Gaps = 34/370 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC +N D+ + L G ++ D+ ++AD+ ++NTCTV P++ M ++
Sbjct: 23 VCIETYGCRYNFGDTAKLTEVLKHRGCSIADSVDDADVVIVNTCTVVGPTERRMLRRLSA 82
Query: 121 CKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + L V GC+PQ ++ + + + I V G
Sbjct: 83 LRD--RDLFVTGCMPQVQKEAILSVCDPGFIAPDAIQEWYRRVGTVAAGS---------- 130
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
V I+ + GC G CTYC T+ ARG L S+ + + +V A G
Sbjct: 131 -------------VGIVQLAQGCNGTCTYCITRQARGPLRSFPLHEVRRQVAAYAACGAA 177
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ L+++D +YG+DIG++L LLN I P GS +R+GM NP +++ L I +
Sbjct: 178 EIQLTAQDVSSYGKDIGLSLAGLLNDIGD---PPGSYCIRVGMMNPATVMDDLDAIIDAF 234
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
++ FLH+PVQSGSD +L M R+YT+ DF ++ + P + + TD+I GFPGE
Sbjct: 235 SAERIFRFLHLPVQSGSDTILERMGRQYTVRDFCRIIAAFRKRYPEITVMTDMIAGFPGE 294
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-- 417
T+EDF+ +++LI+ + +V+++++ RP TP ++ K + +V K RSR + S E
Sbjct: 295 TEEDFSASIDLIRRLRPNKVNVTRYSKRPFTPLSQEKDILDSVKKNRSRIMLSCSEQVYA 354
Query: 418 ---TPYLGME 424
P+LG E
Sbjct: 355 EVNRPWLGRE 364
>gi|448374494|ref|ZP_21558353.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
gi|445659933|gb|ELZ12733.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
Length = 417
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 207/400 (51%), Gaps = 26/400 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIERRLRDAGHHRVDGVDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L V GC+ L + E GV + V E + E P
Sbjct: 65 ADETADLYVTGCMA-----LAQGEAFVNAGVDADVLHWDEVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
++ +DTG YG D G L LL+ I +G +R+GM NP + +E+A V
Sbjct: 173 RITGQDTGVYGWDDGERKLHRLLDRIC---DIEGDFRVRVGMANPKGVHGIREELASVFA 229
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ +Y FLH PVQSGSD VL M R++ +S++ VV+T + +P ++TD I GFP E
Sbjct: 230 DNEELYDFLHAPVQSGSDDVLGDMRRQHQVSEYVEVVETFDDALPYWTLSTDFIVGFPTE 289
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VF 414
TD D Q++ L++E + ++++++F RPGT AA MK + + K+RS E++ V
Sbjct: 290 TDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSSEMSEVKRELVR 349
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPS 451
EA+ +G E R + + + E D + Y Q++V S
Sbjct: 350 EAYADMVG-ETREDVLVVEEGTGDSVKCRDSAYRQLIVRS 388
>gi|307354819|ref|YP_003895870.1| MiaB-like tRNA modifying protein [Methanoplanus petrolearius DSM
11571]
gi|307158052|gb|ADN37432.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM
11571]
Length = 404
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 223/433 (51%), Gaps = 54/433 (12%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GC+ N +D+E + G ++ E A+ +INTCTV + ++ AM +IA+
Sbjct: 9 IHLETYGCTFNFADTEKIVRVAEKQGCSIVPPGE-AEAVIINTCTVVAQTERAMLRVIAE 67
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
K + V GC+ DL + GV ++ + ++R E + + G
Sbjct: 68 FPD--KEIYVTGCMAVVQPDL--IYGVRPDARLILPEDLNRCPETIGSLVDGS------- 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
I+ GC+ C YC T+ ARG L S+ + ++ + +++
Sbjct: 117 ----------------TGIVQTARGCVSRCAYCITRSARGRLRSFPEDKIIEEIERLVSA 160
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+ +D AYG D G +LP LLN I + +G M+R+GM NP + E++
Sbjct: 161 GAVEIQLTGQDLSAYGMDTGSSLPDLLNRINS---LEGEFMVRVGMMNPSTAIPLTDELS 217
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+ ++SF H+PVQSGSD VLS M R Y + DFR +V L + PG++I+TD I G+
Sbjct: 218 DAFLGEKIFSFAHLPVQSGSDKVLSDMKRGYQVQDFRNLVAELRKKDPGIRISTDFIVGY 277
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT----- 411
P ET+EDF +T+ L++E + +V+I++F R GT AA++K +P + K+RSR LT
Sbjct: 278 PTETEEDFLKTLALLEEIRPTKVNITRFSAREGTDAAKLKDIPDWIKKERSRALTIAANR 337
Query: 412 ---SVFEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKI 464
SV E+F G+ + +TE G + Y +++ + GT V+I
Sbjct: 338 LYDSVNESFI------GKDLDVIVTERKRAGSCIARDKSYNNIVIEEELDA-GTRCRVRI 390
Query: 465 TSVGRWSVFGEVI 477
S R + GE I
Sbjct: 391 VSHRRHYLIGERI 403
>gi|55379963|ref|YP_137813.1| hypothetical protein rrnAC3428 [Haloarcula marismortui ATCC 43049]
gi|55232688|gb|AAV48107.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 427
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 223/446 (50%), Gaps = 58/446 (13%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +++ + L G+ D E AD+ ++NTCTV ++ M +A+
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNM---LARA 61
Query: 122 K--SAKKP--LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
K ++ P LV+ GC + QG +E + I + +LH
Sbjct: 62 KELDSETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLH 97
Query: 176 RKKLPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+P L P N V ILPI GC+ C+YC TK A G + S +VE
Sbjct: 98 WDDVPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEE 157
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGM 282
V + R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM
Sbjct: 158 NVEKARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGM 215
Query: 283 TNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
NP + +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL +
Sbjct: 216 ANPKGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDD 275
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
+ ++TD I GFP E D Q++ L++E + ++++++F RPGT A MK +
Sbjct: 276 QLDYWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDADNMKGLGGQ 335
Query: 402 VVKKRSRELTSVFEAF--TPYLGMEGRVERIWITEIAAD----GIHLGYVQVLVPST--- 452
+ K RS+E++ Y M G + + E D G Y QV++
Sbjct: 336 IKKDRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDESLVGYDEAYRQVVIADAQER 395
Query: 453 GNMLGTSALVKITSVGRWSVFGEVIK 478
G +G + V+ITS FGE I+
Sbjct: 396 GLEIGDTVDVEITSHNTVYAFGEPIE 421
>gi|448303684|ref|ZP_21493633.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
gi|445593469|gb|ELY47647.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
Length = 417
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 221/431 (51%), Gaps = 33/431 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
H +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAEHDELYDFLHAPVQSGSNDVLGDMRRQHQVDEYLEVVETFDDALEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E+++
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKREL 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V +A+ +G E R + + + E AD + Y QV+V + G G ++IT+
Sbjct: 348 VADAYAEMVG-ETREDVLVVEEGTADSVKCRDSAYRQVIVQNASEHGLEPGDFVDLEITA 406
Query: 467 VGRWSVFGEVI 477
FG+ I
Sbjct: 407 HETMYAFGKPI 417
>gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 451
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 199/366 (54%), Gaps = 20/366 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ T+GC N++DSE +AGQL GY+ TD E+AD+ LINTC V+ ++ + I +
Sbjct: 19 HIITYGCQMNENDSERLAGQLRGLGYSSTDQIEQADLILINTCCVRESAEKKIYGKIGEL 78
Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--V 171
K K + V GC+ Q RD + V +V G + ++ ++++E + + +
Sbjct: 79 KRLKTVNPNLLIGVTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEISQSRDRVL 138
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ + + A D+P VR+++ +PI GC CTYC + RG S + ++ VR
Sbjct: 139 AVWDQAERLAPDVPTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERSRPLADILAEVR 198
Query: 232 TVIADGVKEVWLSSEDTGAYGRD--IGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFI 288
+ +G KE+ L ++ +YG+D ++ LL A+ T+ RI MT+ P
Sbjct: 199 QLGTEGFKEITLLGQNVNSYGKDGEETIDFADLLAAV-----DKVETIARIRYMTSHPRD 253
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ + K IA + + H+PVQSGSD VL MNR YT +R +V+ + +P I
Sbjct: 254 M-NAKVIAVIKHGQRICEHFHLPVQSGSDIVLQRMNRGYTTEYYRKLVEKIRSEIPHASI 312
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII GFPGETDE F QT++ ++ +F + + PR GTPAA M +VP A+ K+R
Sbjct: 313 TTDIIVGFPGETDELFMQTLDFVRSIRFDAAYTFLYSPRSGTPAATMPDQVPLAIKKQRL 372
Query: 408 RELTSV 413
++L +V
Sbjct: 373 QQLMAV 378
>gi|452207624|ref|YP_007487746.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
gi|452083724|emb|CCQ37039.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
Length = 414
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 138/429 (32%), Positives = 217/429 (50%), Gaps = 28/429 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GC+ N+ +S + L G+ + + EAD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCTSNRGESRRIERSLRDAGHRPVEGTAEADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ +S L+V GC+ L + E + + VQ + E V + E
Sbjct: 63 ELESETADLIVTGCMA-----LAQGEAFADLDVQVLH--WEDVPSAVTNGECPTTTPDAE 115
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S T+E+ V + R ++ G K
Sbjct: 116 PILD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTIEANVEKARALVHAGAK 168
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 169 EIRVTGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADV 225
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL AM R++ + FR VVDT + ++TD I GFP
Sbjct: 226 FADNRKLYDFIHAPVQSGSDEVLEAMRRQHRVGKFREVVDTFEGRLDHWTLSTDFIVGFP 285
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 417
ET+ DF +++ L+ + + ++++++F RPGT AA MK + + K+RS+ ++ +
Sbjct: 286 TETEADFERSMALLADVRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKAMSELKREI 345
Query: 418 --TPYLGMEGRVERIWITEIA-ADGIHL---GYVQVLVPST---GNMLGTSALVKITSVG 468
+ M G + E D I Y QV+V G +G V++T+
Sbjct: 346 CTETHASMVGETHEVLAVEPGTGDSIKCRDEAYRQVIVTDAAERGVEVGDLLEVEVTAHE 405
Query: 469 RWSVFGEVI 477
FGE I
Sbjct: 406 AMYCFGEPI 414
>gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1]
gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1]
gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727568|emb|CAP14356.1| MiaB-like tRNA modifying enzyme [Halobacterium salinarum R1]
Length = 432
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 219/437 (50%), Gaps = 30/437 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ + + +AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L+V GC+ L + E + V + V E + E P
Sbjct: 65 ADETADLIVTGCMA-----LAQGEAFADADVDAQVLHWDDVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TK A G + S VE V + R ++ G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEI 172
Query: 242 WLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
++ +DTG YG D G LP LL I E+ +G +R+GM NP + +E+A V
Sbjct: 173 RITGQDTGVYGWDTGERKLPELLERIATEI--EGEFRVRVGMANPGGVHGIREELAAVFA 230
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
H +Y+FLH PVQSGSD VL+ M R++ +S +R +V+T + + ++TD I GFP E
Sbjct: 231 EHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVETFNDTLGEWTLSTDFIVGFPTE 290
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VF 414
D+D +++L++E + ++++++F RPGT AA +K + K RS+ +T V
Sbjct: 291 DDDDHEASMDLLRETRPEKINVTRFSKRPGTDAAELKGLGGQTKKDRSKAMTELKMDVVG 350
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITSVG 468
EA +G R + + + E D + Y QV+V + G G A V++TS
Sbjct: 351 EAHESMVGT--RRDVLVVEEGTGDSVKCYDGAYRQVIVQNATDHGLEPGDFATVEVTSHQ 408
Query: 469 RWSVFGEVIKILNQVDD 485
F E + VDD
Sbjct: 409 TVYAFAEPVDAA-AVDD 424
>gi|148269242|ref|YP_001243702.1| MiaB-like tRNA modifying protein [Thermotoga petrophila RKU-1]
gi|147734786|gb|ABQ46126.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
Length = 434
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 225/433 (51%), Gaps = 35/433 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + + +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGD-VSYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE--TLKGHEVRLL 174
++ + +++ GC Q S D E +S+ V ID +V+ +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIV 118
Query: 175 HRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRV 230
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 119 SEPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEF 176
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++A G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + +
Sbjct: 177 VEMVAKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND 233
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I
Sbjct: 234 ---EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSIT 290
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSA 401
TDII GFPGETD+DF +T++L+++ F +VHI +F PRPGTPA+RM KK
Sbjct: 291 TDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKKKERLD 350
Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS--TGNMLGTS 459
V+K+++++++ + +G E +V W GI GY + V G+ +G
Sbjct: 351 VLKEKAKDVSIRYRKRI--IGKERKVLAEWYV---MKGILSGYDEYYVKHEFVGDRVGEF 405
Query: 460 ALVKITSVGRWSV 472
V++ S+ V
Sbjct: 406 HNVRVKSLSEEGV 418
>gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 7424]
gi|229890508|sp|B7K993.1|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424]
Length = 454
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 233/459 (50%), Gaps = 56/459 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY +D+ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDIGYQWSDDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G + L+ + + +V G Q +R+ ++++E L G++V
Sbjct: 69 AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVLAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC CTYC + RG S T +++ +
Sbjct: 129 TEPIHI-VEDITKPRRESTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPQAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVNDVP--GIERIRFATS 244
Query: 284 NPPFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+P + E L KE+ +V H H+P QSG + +L AM R YT +R ++D +
Sbjct: 245 HPRYFTERLIVACKELPKVCEH------FHIPFQSGDNDLLKAMKRGYTHERYRQIIDKI 298
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
E +P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA
Sbjct: 299 REYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQL 358
Query: 400 SAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTG 453
S VK +R L ++ E YL GR+E + + ++ + QV+ + G
Sbjct: 359 SEEVKSDRLQRLNHLVAIKAAERSQRYL---GRIEEVLVEDVNPKDL----TQVMGRTRG 411
Query: 454 NML-----------GTSALVKITSVGRWSVFGEVIKILN 481
N L G VKIT V +S+ GE +KIL+
Sbjct: 412 NRLTFFTGDINQLKGQLVEVKITDVRAFSLTGEPVKILS 450
>gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
Length = 428
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 216/428 (50%), Gaps = 41/428 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I ++TFGC++N DS+ +A L+A G + + E A++ +INTC V + ++ M I+
Sbjct: 31 ICIRTFGCAYNVGDSDLLASVLTASGSVIVSDPELAEVMIINTCIVIASTERKMLKEISS 90
Query: 121 CKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + V GC+P L+E V ++ I R V KG
Sbjct: 91 YPDHE--VYVTGCLPLALPESLQEHTTVKLIHPDSIHRAAATVSYDQKGP---------- 138
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
V ++ I GC+G+C YC T+ ARG + S + + + + + G
Sbjct: 139 -------------VSVVQIGPGCVGSCRYCITRCARGSIRSNSPHQIYSHIASCVRGGAV 185
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+ +D AYG D G +L LL I A PD T +R+GM NP + + +A
Sbjct: 186 EIRLAGQDLSAYGHDTGQWSLATLLEGIPAL--PD-ITRIRLGMMNPATLKPIAQRVART 242
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ + +SFLH+P+QSGSD VL M R YT++D + ++D + + IATDII GFPG
Sbjct: 243 MNNGPFFSFLHLPIQSGSDHVLDLMGRGYTVADVQNIIDIFRAEMSDITIATDIITGFPG 302
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 418
ETD+D +TV LI+ V+++++ RPGT +R ++P + K+RSR + + E++T
Sbjct: 303 ETDDDHEETVRLIRRIAPGMVNVTRYSWRPGTGMSRDHELPDRIRKERSRAI--IRESYT 360
Query: 419 PYL----GMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKITSVGRW 470
+ M+G V R+ TE G + Y V++ LG +V IT
Sbjct: 361 MFQKANEKMKGAVMRVIPTEQLKPGSVMARSERYEGVVIREECQ-LGIPCMVTITGSTPH 419
Query: 471 SVFGEVIK 478
+ GEVI+
Sbjct: 420 YLIGEVIR 427
>gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
Length = 442
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 146/439 (33%), Positives = 220/439 (50%), Gaps = 31/439 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KTFGC N +DSE MAG L GY EEADI ++NTC+V++ + + I
Sbjct: 5 FFIKTFGCQMNVNDSEKMAGLLRDMGYEKAQTPEEADIVIVNTCSVRAKPDNKAYSFIGN 64
Query: 121 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-GHEVR 172
K KK + VAGCVPQ ++ + V +V G ++ +++E + G V
Sbjct: 65 LKRLKKRRPDLVVAVAGCVPQKEKEQILRFPHVDLVFGTFNFVKLPQLLERVKREGRVVE 124
Query: 173 LLHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+L+RK KLP +D N F+ + + GC CTYC RG S +V
Sbjct: 125 ILNRKIPEEEKLPLVD--SYLENPFIAYVTVQRGCNRFCTYCIVPFTRGRERSVAPHLVV 182
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ + GVKEV L ++ YG G +L LL +V+E+ +G +R ++P
Sbjct: 183 EEVKRLAERGVKEVHLLGQNVDFYGYQ-GTDLADLL-YMVSEV--EGVERVRFTTSHPAG 238
Query: 288 ILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
E IA +R P V ++H+P QSGS+ VL MNR YT ++ V L E VP +
Sbjct: 239 FSER---IARAIRDIPKVCPYVHLPPQSGSNRVLERMNRGYTREEYIEKVQMLREFVPNV 295
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
++ D I GFPGET+EDF QT++L++E F Q + ++ PRP T AA K VP V +
Sbjct: 296 ALSGDFIVGFPGETEEDFEQTLSLVEECVFDQAFVFEYSPRPFTKAATFKDDVPKEVKNR 355
Query: 406 RSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGT 458
R + L + +A L G+VE + I + G L V V + ++G
Sbjct: 356 RLQTLQELVKKQALERNLERVGKVEEVLIEGFSPKGSELYGRTADNKPVAVEGSEELIGK 415
Query: 459 SALVKITSVGRWSVFGEVI 477
+ V+IT + + G+ +
Sbjct: 416 TVEVEITQASPFFLKGKPV 434
>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|404489194|ref|YP_006713300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423682247|ref|ZP_17657086.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
gi|81385531|sp|Q65JE5.1|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348185|gb|AAU40819.1| tRNA methylthiotransferase YmcB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|383439021|gb|EID46796.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
Length = 509
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 222/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NTC ++ +++ + I
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRTGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+Y + +V + + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAKIKKAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L V + EG+V + + + + I GY + LV G +G
Sbjct: 425 QRLNEVVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNFKGPKEAIGQL 484
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 485 VNVKIHQAKTWSLDGEMV 502
>gi|410995108|gb|AFV96573.1| hypothetical protein B649_01295 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 432
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 137/438 (31%), Positives = 218/438 (49%), Gaps = 26/438 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKS-PSQSAMD 115
++ ++++T GC+ N DSE+M +L+A GY LTD++ AD+ LINTC+V+ P
Sbjct: 2 SKKLFIETLGCAMNTRDSEHMIAELNAHEGYELTDDASAADLILINTCSVREKPVHKLFS 61
Query: 116 TL--IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K A + V GC G +K V+ V G + + ++ +V+ K E
Sbjct: 62 ELGVFNKLKKADAKIGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD-KAVE 120
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + + A R + + + I++GC CT+C RG S + +V
Sbjct: 121 IEIDYDESQFAF--KDFRSSPYKAYINISIGCDKQCTFCIVPKTRGDEISIPPDLIVAEA 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
R + G KEV+L ++ YGR + +N LL + A + RI T+P
Sbjct: 179 RKAVDSGAKEVFLLGQNVNNYGRRLSGGNEKINFTELLRRVSA-----VEGLERIRFTSP 233
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + I E R+P + +H+P+QSGS +L AM R YT F L ELVP
Sbjct: 234 HPLHMDDEFIEEFARNPKICKSMHMPLQSGSTEILKAMKRGYTKDWFLNRARKLRELVPN 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
+ I+TDII FPGE+DEDF +T+ ++ + +F Q+ ++ PRP T A +M +V S V +
Sbjct: 294 VSISTDIIVAFPGESDEDFEETMEVLNQVRFEQLFSFKYSPRPLTEAEKMAEVDSEVGSE 353
Query: 406 RSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLGY----VQVLVPSTGNMLGTS 459
R L + + + + G++ ++ E+ G G + V V + MLGT
Sbjct: 354 RLSRLQARHDEILDEMKLVNLGKIVEVYFEELREGGYVAGRSDNNLGVKVKGSEEMLGTI 413
Query: 460 ALVKITSVGRWSVFGEVI 477
A VKIT V R +GE+I
Sbjct: 414 ASVKITEVSRNVQYGEII 431
>gi|281411540|ref|YP_003345619.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
gi|281372643|gb|ADA66205.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
Length = 434
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 225/433 (51%), Gaps = 35/433 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + + +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGD-VSYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE--TLKGHEVRLL 174
++ + +++ GC Q S D E +S+ V ID +V+ +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIV 118
Query: 175 HRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRV 230
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 119 SEPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEF 176
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++A G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + +
Sbjct: 177 VEMVAKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND 233
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I
Sbjct: 234 ---EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSIT 290
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSA 401
TDII GFPGETD+DF +T++L+++ F +VHI +F PRPGTPA+RM KK
Sbjct: 291 TDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKKKERLD 350
Query: 402 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS--TGNMLGTS 459
V+K+++++++ + +G E +V W GI GY + V G+ +G
Sbjct: 351 VLKEKAKDVSIRYRKRI--IGKERKVLAEWYV---MKGILSGYDEYYVKHEFVGDRVGEF 405
Query: 460 ALVKITSVGRWSV 472
V++ S+ V
Sbjct: 406 HNVRVKSLSEEGV 418
>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. Y412MC61]
gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
Length = 531
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 220/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYSLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA MK VP V K+R
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERL 438
Query: 408 RELTSVFE--AFTPYLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + A EG+V + + + + GY + LV G +++G
Sbjct: 439 KRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQL 498
Query: 460 ALVKITSVGRWSVFGEVI 477
V+IT W++ GE++
Sbjct: 499 VNVRITQAKTWTLTGELV 516
>gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
Length = 417
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 221/428 (51%), Gaps = 33/428 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIESALRDAGHYRVEGPEQADVAIMNTCTVVEKTERNMVRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S L++ GC+ QG E I+ + V E G V
Sbjct: 65 QSETADLIITGCMALAQGDEFRTEDVDAQIMHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L +LL+ I E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDRGERKLHVLLDRICNEI--EGDFRVRVGMANPKGVHGIREELAQV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y+F+H PVQSGS+ VL M R++ + ++ +V+T E + ++TD I GFP
Sbjct: 229 FAENDELYNFIHAPVQSGSNDVLGDMRRQHQVEEYVEIVETFDEYLDYWTLSTDFIVGFP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD+D Q++ L++E + ++++++F RP T AA+MK + K+RS+E++
Sbjct: 289 TETDDDHEQSMALLRETRPEKLNVTRFSKRPNTDAAKMKGLGGTKKKERSKEMSELKMDI 348
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V A+ +G E RV + + E D + Y Q++V + G G V++TS
Sbjct: 349 VGAAYDEMVGTEKRV--MVVEEGTGDSVKCRDEAYRQIIVQNATEHGIEPGDFLDVEVTS 406
Query: 467 VGRWSVFG 474
FG
Sbjct: 407 HQTVYAFG 414
>gi|342218658|ref|ZP_08711266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
gi|341589354|gb|EGS32635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
Length = 443
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 202/387 (52%), Gaps = 21/387 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+ G + Y+ T+GC N SDSE AGQL A GY +T++ + AD+ L+NTC V+ ++
Sbjct: 3 VLGNKFAYIATYGCQMNSSDSERYAGQLEALGYHMTEDMDMADVILLNTCCVRETAEGKT 62
Query: 115 DTLIAKCKSAKK---PLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
I + K K+ LV+A GC+ Q +D + V +V G I ++ E+++
Sbjct: 63 LGKIGELKHYKERNPKLVIAITGCMAQEWQDRLFERAPHVDLVIGTHNIHKLTELLQVRQ 122
Query: 167 KGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
H L LPA DLP R +KF +PI GC CTYC H RG S ++
Sbjct: 123 GKHA--LAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKYCTYCIVPHVRGREVSRPLQD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+V V+ + G KE+ L ++ +YG D+ G + L++A+ G +R +
Sbjct: 181 IVAEVKALGRAGYKEITLLGQNVNSYGLDLKDGTDFSSLVDALE---DAKGVERIRYMTS 237
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + K I + R V LH+PVQSGS+A L MNR YT+ + +VD E +
Sbjct: 238 HPKDMTK--KMIDAIARSTRVVHHLHLPVQSGSNATLKRMNRGYTVEHYLELVDYAREKM 295
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
P + + TD+I GFPGET+E F +T+ LI+ + + + PR GTPAA K ++P
Sbjct: 296 PDLVLTTDMIVGFPGETEEMFQETLALIQRVGYDMAYTFIYSPRTGTPAATWKDQIPQEE 355
Query: 403 VKKRSRELTSVFEAFTPYLGMEGRVER 429
KR + L + F+ L + ++E+
Sbjct: 356 KSKRLKRLMDIQNEFS--LALNKKMEQ 380
>gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
Length = 436
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 218/442 (49%), Gaps = 30/442 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
E + T GC NQ D+E M +A Y L D S+EAD+++INTCTV ++
Sbjct: 2 ERVAFYTLGCKVNQYDTEAMINLFTAADYELVDFSDEADVYVINTCTVTHQGARKSRKMV 61
Query: 119 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ +VA GC PQ S ++ E++GV IVG + R+V++VE+ + E
Sbjct: 62 RRANRRNPQAIVAVVGCYPQVSPAEILEIDGVDLIVGTEGQSRIVDLVEQAKRADESLNF 121
Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R A D ++ +KF E L + GC C YC + RG + S +E V
Sbjct: 122 VRDISEAEDFEEIPLDKFEERTRASLKVQDGCDNFCAYCIIPYTRGSVRSRRIEDAVAEA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + A G KE+ L+ GAYG+++ ++L LL ++ G +R+ +
Sbjct: 182 KRLAASGFKEIVLTGIHLGAYGKEVEEEIDLVTLLKELI---EISGLERIRLSSIEATEV 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L ++ C + LH+P+Q+GSD +L+AMNR+YT+ + V + +P + +
Sbjct: 239 TSDLIDLIATEEKLCRH--LHLPLQNGSDKILAAMNRDYTVQQYADKVAEIRSNIPQIAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA--------RMKKVPS 400
TD++ GFPGETDEDF T LI+E F +H+ ++ R GT AA ++KK S
Sbjct: 297 TTDVMVGFPGETDEDFEATYQLIEELAFSDLHVFKYSKREGTAAAKFSNQVHSKLKKERS 356
Query: 401 AVVKKRSRELTSVFEAFTPYLGMEGRV----ERIWITEIAADGIHLGYVQVLVPSTGNML 456
A ++K + +L S + +LG E V ER T++ G+ Y++V++
Sbjct: 357 AKLRKLADDLASQYR--KKFLGAELDVLIEEERDGSTDLLT-GLTDNYLRVMIDDQDQYR 413
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
V++ + + G++ K
Sbjct: 414 KELIEVELNKLQEDYLIGKITK 435
>gi|345019810|ref|ZP_08783423.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Ornithinibacillus scapharcae TW25]
Length = 525
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 222/437 (50%), Gaps = 24/437 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG LS GY T + EAD+ L+NTC ++ +++ + I K
Sbjct: 86 IRTYGCQMNEHDTEVMAGILSEMGYESTTETSEADLILLNTCAIRENAENKVFGEIGHLK 145
Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K KP L V GC+ Q R +K+ + + +V G I R+ +V+E + G E
Sbjct: 146 PLKTEKPDLILGVCGCMSQEESVVDRIMKKHQHIDLVFGTHNIHRLPNLVQEAMFGKEQV 205
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPK R+ K + I GC CTYC RG S + ++ +
Sbjct: 206 VEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPDDIIQEI 265
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + A+G +EV L ++ AYG+D ++ ++ ++ +R ++P +
Sbjct: 266 RHLAAEGYQEVTLLGQNVNAYGKDFE-DIDYRFGDLMDDIRKIDIPRIRFTTSHPRDFDD 324
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
HL E+ + + + +H+PVQSGS VL MNR+YT D+ VV + E +P + T
Sbjct: 325 HLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMNRKYTREDYLEVVRKIREAIPNATLTT 382
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII GFP ETDE F +T+ L++E F + + PR GTPAA+ K VP V K+R
Sbjct: 383 DIIVGFPNETDEQFEETMTLVEEVGFEAAYTFIYSPREGTPAAKKKDDVPEEVKKQRLYR 442
Query: 410 LTSVF--EAFTPYLGMEGRVERIWIT-EIAAD-GIHLGYVQ--VLVPSTG--NMLGTSAL 461
L + ++ EG+ ++ + E D I GY + LV G + +G
Sbjct: 443 LNELVNKQSAASMKSYEGKTVKVLVEGESKKDPNILAGYTEKNKLVNFKGPKSSIGKIVD 502
Query: 462 VKITSVGRWSVFGEVIK 478
VKIT WS+ G +++
Sbjct: 503 VKITETKTWSLNGVMVE 519
>gi|405983202|ref|ZP_11041512.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
gi|404389210|gb|EJZ84287.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
Length = 451
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 225/452 (49%), Gaps = 40/452 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T+GC N+ DSE +AG L + G + E+A+I + TC ++ + + +
Sbjct: 7 KTFCLYTYGCQMNEHDSERIAGMLESHGAVQVSSVEQAEIAIFVTCCIREAADVRLMGQV 66
Query: 119 AKCKS---------AKKPLVVAGCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEE 164
A K+ +K+ + + GC+ G RD ++L + G Q I+ +V ++E
Sbjct: 67 ASIKNIPLPQGSELSKRIVCIGGCI--GQRDAEKLPEALPHVDVVFGTQNIEHLVSLIEA 124
Query: 165 TL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+ GH+V +L + +LP R + + LP+ VGC CTYC + RG S T
Sbjct: 125 AIIQGGHQVEVLDSSTSFSTELPSKRVHPWSAWLPVTVGCNNFCTYCIVPYVRGRERSRT 184
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRI 280
+E +V R ++ADGVKE+ L ++ +YGRD+ P + + VAE G LR
Sbjct: 185 LEDVVEEARGLVADGVKEITLLGQNVNSYGRDL-YGEPRFADVLRGVAET---GVERLRF 240
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P + + E+ L + + LH+PVQSGSDA+L AMNR YT + +++ +
Sbjct: 241 ATSHPKDLTREVIELYGSLGN--LMPSLHLPVQSGSDAILKAMNRRYTAEHYLGLIEEVR 298
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
++ P + +TDII GFPGET+EDF T +L++ + QV + R GTPAA M+ P
Sbjct: 299 KVNPDISFSTDIIVGFPGETEEDFQATYDLVERVGYSQVFTFIYSRREGTPAASMQDDTP 358
Query: 400 SAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITE--------IAADGIHLGYVQVLV 449
V+++R L + + AF GR + + +A H V +
Sbjct: 359 HEVIQRRFDSLVDLVQENAFAQNQRFVGRTVDVLVEGASKRDERVLAGHSPHNITVHAPL 418
Query: 450 PS---TGNMLGTSALVKITSVGRWSVFGEVIK 478
P +++GT V+I W + G +++
Sbjct: 419 PEGVRIDDIVGTVVPVRIDEAKAWYLSGAMLR 450
>gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|448281973|ref|ZP_21473266.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
gi|445577602|gb|ELY32035.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
Length = 417
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 212/400 (53%), Gaps = 30/400 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 STETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + ++++++F RPGT AA MK + V K RS+E+++
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGQVKKDRSKEMSAAKREL 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIH---LGYVQVLV 449
V EA+ +G E R + + + + AD + Y Q++V
Sbjct: 348 VGEAYAEMVG-ETREDVLVVEQGTADSVKCRDAAYRQIIV 386
>gi|448306889|ref|ZP_21496792.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
gi|445597400|gb|ELY51476.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
Length = 417
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/399 (32%), Positives = 210/399 (52%), Gaps = 28/399 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGLDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E I G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEHICEI--EGDFRVRVGMANPKGVHGIREELAAVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
H +Y FLH PVQSGS+ VL M R++ +S++ VV+T + + ++TD I GFP
Sbjct: 229 AEHDELYDFLHAPVQSGSNDVLGDMRRQHQVSEYLEVVETFDDALEYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
E+D D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E+++ V
Sbjct: 289 ESDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIV 348
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLV 449
+A+ +G E R + + + E AD + Y QV+V
Sbjct: 349 ADAYADMVG-ETREDVLVVEEGTADSVKCRDSAYRQVIV 386
>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase protein MiaB [Geobacillus sp. C56-T3]
gi|448237459|ref|YP_007401517.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
gi|445206301|gb|AGE21766.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
Length = 531
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 220/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA MK VP V K+R
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERL 438
Query: 408 RELTSVFE--AFTPYLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + A EG+V + + + + GY + LV G +++G
Sbjct: 439 KRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQL 498
Query: 460 ALVKITSVGRWSVFGEVI 477
V+IT W++ GE++
Sbjct: 499 VNVRITQAKTWTLTGELV 516
>gi|448737807|ref|ZP_21719841.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
gi|445803263|gb|EMA53562.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
Length = 414
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 220/433 (50%), Gaps = 36/433 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D AD+ ++NTCTV +++ M
Sbjct: 3 SYHIETYGCTANRGESRAIERRLRDGGHHPVDGPANADVAILNTCTVVEKTETNMRRRAE 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ A +VV GC+ QG + +L+ ++ G ++ VV + E
Sbjct: 63 ELDEATADVVVTGCMALAQGEQ-FADLD-ATVCGWDEVPEVV-------RNGECPRPTPD 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S +E V + R ++ G
Sbjct: 114 AEPILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVRKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDTGERKLHELLERICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+V +Y+FLH PVQSGS+ VL M R++ +S+FR VV+T + + +ATD I G
Sbjct: 224 DVFAEEEKLYNFLHAPVQSGSNDVLGDMRRQHQVSEFRDVVETFDDRLDHWTLATDFIVG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 412
FP ETD D Q++ L++E ++++++F RPGT AA MK + K+RS+ ++
Sbjct: 284 FPSETDADHEQSMALLRETTPERINVTRFSKRPGTDAAEMKGLGGTKKKERSKAMSDLKM 343
Query: 413 --VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLV---PSTGNMLGTSALVKI 464
V +A+ +G R E + + D + Y QV++ P G G V+I
Sbjct: 344 DVVGDAYESMVGE--RHEVMVVEHGTGDSVKCYDEAYRQVIIQDAPGYGVEPGDLVDVEI 401
Query: 465 TSVGRWSVFGEVI 477
T FG+ +
Sbjct: 402 TGQNTVYAFGKPV 414
>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
kaustophilus HTA426]
gi|375008279|ref|YP_004981912.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Geobacillus thermoleovorans CCB_US3_UF5]
gi|81347575|sp|Q5L0E8.1|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359287128|gb|AEV18812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Geobacillus thermoleovorans CCB_US3_UF5]
Length = 531
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 220/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA MK VP V K+R
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERL 438
Query: 408 RELTSVFE--AFTPYLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + A EG+V + + + + GY + LV G +++G
Sbjct: 439 KRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQL 498
Query: 460 ALVKITSVGRWSVFGEVI 477
V+IT W++ GE++
Sbjct: 499 VNVRITQAKTWTLTGELV 516
>gi|15605821|ref|NP_213198.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aquifex
aeolicus VF5]
gi|6226354|sp|O66638.1|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
Length = 440
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 232/440 (52%), Gaps = 38/440 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDT 116
++ ++KTFGC N +DSE + G L GY TDN EEAD+ ++NTCT++ P Q +
Sbjct: 2 SKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSH 61
Query: 117 L----IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGH 169
L K K+ K + VAGC+ Q G +K+ + I+ + ++ E++ + G+
Sbjct: 62 LGEYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGY 121
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ + L + + + P R NK+ + I GC CTYC RG S + S
Sbjct: 122 KAIAILDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHS 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
++ V+ ++ DGV+E+ L ++ A+G+D PI + ++ ++ DG +R +
Sbjct: 182 ILDEVKRLVDDGVREIHLLGQNVTAWGKDF--EKPIPFSELLYQVSKIDGVERIRFTTGH 239
Query: 285 PPFILEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + + + E +A++ P V + LH+P Q+GS+ +L+ M+R YT ++ ++ L E V
Sbjct: 240 PRDLTDDIIEAMADI---PQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKV 296
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
+ ++TD+I GFP ET+EDF T++++K+ +F QV +F PRPGTPAA M+ ++P V
Sbjct: 297 KDIAMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQIPDDV 356
Query: 403 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSA 460
+R R L + ++ + EG V+ + + E G ++G +
Sbjct: 357 KTERMRRLLELQKSILSEIAKKYEGTVQEVLVEE---------------EKNGELIGRTT 401
Query: 461 LVKITSV-GRWSVFGEVIKI 479
K S G S+ G+++KI
Sbjct: 402 TNKWASFKGDPSLLGKIVKI 421
>gi|339444956|ref|YP_004710960.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
gi|338904708|dbj|BAK44559.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
Length = 453
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 214/447 (47%), Gaps = 34/447 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG G D EEADI TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMFEGLGALQVDTIEEADIVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ K+ + V GC+ Q G + KEL+ + +V G + + +V ++
Sbjct: 69 SLKNVPLRTDSPLRKRIVAVGGCIGQRDGEKLTKELDHLDVVFGTHNLGSLPHLVMAAIE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH V +L +LP R + + LPI +GC C+YC + RG S +E
Sbjct: 129 EGGHHVEVLDAASSFPTELPTSREHDWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGAPRFAQVLDA-LDGTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + LR + LH+PVQSGSDAVL+AMNR YT + + +V L ++VP
Sbjct: 247 KDLTDEVIGKFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRAHYLELVRKLRDVVPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 404
+ ++TDII GFPGET +DF T L+ E + QV + R GTPAA M+ P ++
Sbjct: 305 IALSTDIIVGFPGETAKDFENTYRLVDEVGYHQVFTFIYSKREGTPAASMEDTTPRETIQ 364
Query: 405 KRSRELTSV-----FEAFTPYLG------MEGRVERIWITEIAADGIHLGYVQVLVP--- 450
+R L + FEA +G +EG +R +A V VP
Sbjct: 365 ERFDRLVDLVQARAFEANQADVGAIVEVLVEGASKRD-AGLLAGKSPKNQTVHAPVPVGK 423
Query: 451 STGNMLGTSALVKITSVGRWSVFGEVI 477
+ + GT V+I W + GEV+
Sbjct: 424 TASELAGTIVPVRINEAKTWYLAGEVV 450
>gi|448529140|ref|ZP_21620399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
gi|445709573|gb|ELZ61399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
Length = 450
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 141/446 (31%), Positives = 226/446 (50%), Gaps = 33/446 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AE
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAE 226
Query: 298 VLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAANEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P ET+ D +++++L+ E + ++++++F RPGT AA MK + + K+RS+ ++
Sbjct: 287 PTETEADHDRSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSELKME 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGNM---LGTSALVKIT 465
V EA+ +G E + + E D + Y Q++V + + +G V++T
Sbjct: 347 VVGEAYESMVGE--TFEVLVVEEGTGDSVKCRDSAYRQIIVQNAADRGVEVGDFLTVEVT 404
Query: 466 SVGRWSVFGEVIKILNQVDDKIASNR 491
FG+ + ++ D A+ R
Sbjct: 405 GHNTVYAFGDPVAT-DEATDPDAAER 429
>gi|15643593|ref|NP_228639.1| hypothetical protein TM0830 [Thermotoga maritima MSB8]
gi|418045000|ref|ZP_12683096.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
gi|14916854|sp|Q9WZT7.1|MTAB_THEMA RecName: Full=Threonylcarbamoyladenosine tRNA methylthiotransferase
MtaB; AltName: Full=tRNA-t(6)A37 methylthiotransferase
gi|4981362|gb|AAD35912.1|AE001750_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678082|gb|EHA61229.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
Length = 434
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 223/431 (51%), Gaps = 31/431 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
++ K +++ GC Q S D K L ++G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMVLGIDEKKHIVDHIN-SLNGKQQVVVS 119
Query: 176 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 231
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + +
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVNDE 234
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ + R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TD
Sbjct: 235 I--VKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTD 292
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVV 403
II GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V+
Sbjct: 293 IIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVL 352
Query: 404 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS--TGNMLGTSAL 461
K+++++++ + +G E +V W G+ GY + V GN +G
Sbjct: 353 KEKAKDVSIRYRKRI--IGKERKVLAEWYV---MKGVLSGYDEYYVKHEFVGNRVGEFHS 407
Query: 462 VKITSVGRWSV 472
V++ S+ V
Sbjct: 408 VRVKSLSEEGV 418
>gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
Length = 446
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 205/404 (50%), Gaps = 26/404 (6%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PG T T GC NQ +++ +AG A GYA+ AD++++NTCTV S
Sbjct: 3 PGEPTAAFHTLGCKVNQGETDAIAGMFKARGYAIVPFDAPADVYVVNTCTVTHLSDRKSR 62
Query: 116 TLIAKC--KSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
I K ++ +VV GC Q + D ++ +EGV IV G + +V++VEE + E
Sbjct: 63 QAIRKANRQNPDAVVVVTGCYAQTAADEVQAIEGVDIVVGTDRRSAIVDLVEEHRRSGET 122
Query: 172 --------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R+ ++LPA R++ + I GC CTYC +ARG + S +
Sbjct: 123 VNTVYDSCRIERFEELPAAP----ERSRARATIKIQDGCDLYCTYCIIPYARGPVRSRRI 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
ES+V + +G KE+ LS GAYG D +L L+ + +P G +R+G
Sbjct: 179 ESVVEEATRLTGEGFKEIVLSGIHLGAYGSDFNADLAKLIVEL-CRIP--GLRRIRVGSV 235
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P E E+ E + HP V H+P+QSGSDAVL M R Y DF V + +++
Sbjct: 236 EP---QEFTPELLEAVVHPRVCPHFHIPLQSGSDAVLERMGRRYRRQDFLDVTRKIQQMI 292
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
PG+ I +D+I GFPGE + D+ + L + +H+ + PR GTPAA ++PSAV
Sbjct: 293 PGVAITSDVIVGFPGEREADYLLSEELCRATGLAGLHVFPYSPRRGTPAATFPDQIPSAV 352
Query: 403 VKKRSRELTSVF-EAFTPYL-GMEGRVERIWITEIAADGIHLGY 444
++R++ L + E + Y G G++ + + E DG+ G+
Sbjct: 353 KQERAQRLAKLARELASDYAKGFVGQIREV-LAEEQVDGVWTGH 395
>gi|448298920|ref|ZP_21488934.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
gi|445588839|gb|ELY43079.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
Length = 417
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 220/430 (51%), Gaps = 31/430 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ + +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVEGVDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFSKADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIESPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEQICEL--EGEFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGSD VL M R++ + ++ ++D E + ++TD I GFP
Sbjct: 229 AEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEIIDAFDEALDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
ETD D Q++ L++E + +V++++F RPGT AA MK + + K+RS+E+++ V
Sbjct: 289 ETDHDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTLKKERSKEMSAAKRDIV 348
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITSV 467
EA+ +G E R + + + E AD + Y Q++V + G G +++T+
Sbjct: 349 GEAYADMVG-ETREDVLVVEEGTADSLKCRDSAYRQIIVQNATEHGLEPGDFVDLEVTAH 407
Query: 468 GRWSVFGEVI 477
FGE +
Sbjct: 408 ETMYAFGEPV 417
>gi|448319224|ref|ZP_21508729.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
gi|445596433|gb|ELY50519.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
Length = 417
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 220/432 (50%), Gaps = 35/432 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ L + GC + QG +E + G V D V E V E
Sbjct: 65 SAETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +E V + ++ G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + +E+AE
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLEEICA---IDGEFRVRVGMANPKGVHGIREELAE 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y FLH PVQSGSD VL M R++ +S++ V++T E + ++TD I GF
Sbjct: 227 VFAENDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDEALEYWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P ETD D Q++ L++E + +V++++F RPGT AA MK + + K+RS+E+++
Sbjct: 287 PTETDRDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKRE 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKIT 465
V EA +G E R + + + E AD + Y QV+V + G G +++T
Sbjct: 347 IVGEAHASMVG-EVREDCLVVEEGTADSVKCRDSAYRQVIVQNASDHGIEPGDFVDLEVT 405
Query: 466 SVGRWSVFGEVI 477
+ FGE +
Sbjct: 406 AHETMYAFGEPV 417
>gi|398304580|ref|ZP_10508166.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
vallismortis DV1-F-3]
Length = 509
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 222/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDHLIDV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ----VLVPSTGNMLGTS 459
+ L ++ + + EG+V + + + + I GY + V T +G
Sbjct: 425 QRLNALVKEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGTKEAVGKI 484
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 432
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/440 (31%), Positives = 215/440 (48%), Gaps = 33/440 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T GC NQ +SE M+ + GY +N + +D++++NTCTV + S I
Sbjct: 3 KTFSILTLGCKVNQYESEAMSELFESRGYRQVENDDFSDVYIVNTCTVTNLSDRKSRQFI 62
Query: 119 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
K K VVA GC Q S ++K +EGV +V G +R+V+++EE+ K +E
Sbjct: 63 RKSKKNNPNSVVAVVGCYSQVSPEEVKSIEGVDVVVGTTDRNRIVDLIEESKKNNE---- 118
Query: 175 HRKKLPALDLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
K DL VR N+ + + GC CTYC ARG + S T+E
Sbjct: 119 --KINIVKDLKNVREFANTTNFDSNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRTIE 176
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
V RT+ G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 177 DSVREARTLADRGFKEIVLTGIHIGSFGMDLGDMRLIDLIEAIAEV--DGIERIRLSSVE 234
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P I + E A C + H+ +QSGS+ +L AMNR YT D+ + + +P
Sbjct: 235 PIIITDDFMERAVKTGKLCDH--FHLSLQSGSNNILKAMNRRYTREDYIEKANIIRNYMP 292
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
+ DII GFPGE+ EDF ++ ++KE F ++H+ ++ R T AA MK ++ V
Sbjct: 293 HAGLTADIIVGFPGESQEDFEDSMKIVKEVGFSRIHVFKYSKRKNTKAAVMKNQIDGNVK 352
Query: 404 KKRSRELTSVFEAFTPYLGMEG-RVERIWITEIAADGIHLG----YVQVLVPSTGNMLGT 458
K+RS +L ++ E + E + + + E DG++ G Y++V S ++
Sbjct: 353 KERSEKLIALGEEYQEIFERENMKTTQSVLFEEEHDGVYYGYTTNYIRVKAKSEEDLTNK 412
Query: 459 SALVKITSVGRWS---VFGE 475
VKI G + V GE
Sbjct: 413 IKKVKILDTGEIANCEVLGE 432
>gi|403252391|ref|ZP_10918701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
gi|402812404|gb|EJX26883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
Length = 443
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 228/434 (52%), Gaps = 23/434 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSNE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPDVAISSD 296
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
II GFP ET+EDF +TV+L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKHYKDDVPHEEKVRRMQF 356
Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--YVQVLVPSTGN--MLGTSALVK 463
L ++ + L G+ R+ + A +G+ G ++ G M+G A VK
Sbjct: 357 LMNLQKRINRKLNERYRGKTVRVIVEAQAKNGLFYGRDIRNKIIAFEGEEWMIGRFADVK 416
Query: 464 ITSVGRWSVFGEVI 477
I + ++G+V+
Sbjct: 417 IEKITAGPLYGKVV 430
>gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1]
gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 401
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 190/376 (50%), Gaps = 26/376 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY + +GC+ NQ ++ +L G L N +EAD+ +I TC V ++ M I
Sbjct: 3 IYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHMMARIQN 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K V+ P + + E + VS++ + EV++E +
Sbjct: 63 LSRFGKVEVIGCLAPVKGKTMVE-DNVSVIEKDRFRSFQEVIDEVSPVNA---------- 111
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ V +PIN GC G C +C + ARG L S E + G+++ ++ G+KE
Sbjct: 112 ----------EIVSGIPINQGCTGKCNFCVSHIARGKLVSRKPEKIAGQIKILLQRGIKE 161
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ ++S DT AYG+DIG+ LP L+ I E+ D LR+GM P LE + ++ R
Sbjct: 162 IKITSLDTAAYGKDIGLRLPHLIRTI-TEIGDDFR--LRVGMMEPKNTLEIVDDLISAYR 218
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
V+ FLH+PVQSG D VL MNREYT+SDF + E P ++TD+I G+ E
Sbjct: 219 SEKVFKFLHLPVQSGDDYVLEVMNREYTVSDFIRITGKFREAFPDSTLSTDLIIGYYAEN 278
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--T 418
D+ F +TV LI++ + +++++F PR T + P+ ++K++ R + + +
Sbjct: 279 DDSFEKTVQLIEKIRPEIINVTKFSPRELTADFEKRPKPTNILKEQDRMIADMHKEILQE 338
Query: 419 PYLGMEGRVERIWITE 434
+ + G+ E + ITE
Sbjct: 339 KFSNLIGKTEFVLITE 354
>gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
petrophila RKU-1]
gi|170288080|ref|YP_001738318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
RQ2]
gi|229891014|sp|A5IJD4.1|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891017|sp|B1L8F3.1|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila
RKU-1]
gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2]
Length = 443
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 231/436 (52%), Gaps = 23/436 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAISSD 296
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
II GFP ET+EDF +T++L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPYEEKVRRMQF 356
Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--YVQVLVPSTGN--MLGTSALVK 463
L ++ + L +G+ R+ + A +G+ G ++ G M+G A VK
Sbjct: 357 LMNLQKRINRKLNERYKGKTVRVIVEAQAKNGLFYGRDIRNKIIAFEGEEWMIGRFADVK 416
Query: 464 ITSVGRWSVFGEVIKI 479
I + ++G+V+ I
Sbjct: 417 IEKITAGPLYGKVVWI 432
>gi|423437227|ref|ZP_17414208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
gi|401120382|gb|EJQ28178.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
Length = 509
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 229/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|218234533|ref|YP_002368575.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus B4264]
gi|229890421|sp|B7HDP7.1|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
Length = 509
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 229/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790]
gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790]
Length = 426
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 193/376 (51%), Gaps = 24/376 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +++GC+ +S++ ++ G L D+ E AD+ +I TC V ++ M I +
Sbjct: 29 VYFESYGCTLEKSEAALYVNKMLQDGGELVDDPERADVSVIGTCVVIKHTEDHMLKRIGE 88
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ ++V GC+ + + E E + ++ K E R +
Sbjct: 89 LSKKSRNVLVLGCLATVNGNTLESENIRVI----------------KPREFRSFY---TG 129
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LD K++ ++ +PIN GC G C +C + +RG L S + E +VG+VR I G++E
Sbjct: 130 TLDDVKIKEPSILDGIPINQGCTGHCNFCISHISRGKLLSRSPEKIVGQVRMQIESGIRE 189
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ ++S DT AYG+DI +L L+N+I D MLR+GM P + L+++ + +
Sbjct: 190 IRITSLDTAAYGKDINTDLADLINSITG---LDVDFMLRVGMMEPRNTYDILEKLIDAYK 246
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
+ V+ FLH+PVQSG + +L +MNREY + + V+ E P M +TDII G+ E
Sbjct: 247 NDKVFKFLHLPVQSGDNRILDSMNREYKIEEAGHVIKRFKEEFPDMVFSTDIIAGYYTED 306
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-- 418
E T I+ Y ++I++F PRP TP K +PS + K+ S+++ + + +
Sbjct: 307 SESMENTYKFIETYMPDIINITRFSPRPYTPDFSRKTMPSNITKEFSKKIMEMHKEYMDE 366
Query: 419 PYLGMEGRVERIWITE 434
GR+ + +TE
Sbjct: 367 KLSRYHGRMLNVMVTE 382
>gi|423395928|ref|ZP_17373129.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|423406803|ref|ZP_17383952.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
gi|401653670|gb|EJS71214.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|401660093|gb|EJS77576.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
Length = 509
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/449 (30%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETISLYREVEFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNTLVNELAVEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P ++G VK+T WS+ GE+++
Sbjct: 477 PKA--LIGQLVKVKVTEAKTWSLNGELVE 503
>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|365159451|ref|ZP_09355631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|423412423|ref|ZP_17389543.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|423431792|ref|ZP_17408796.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|363625163|gb|EHL76208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|401104491|gb|EJQ12468.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|401116548|gb|EJQ24386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
Length = 509
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 229/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|352681870|ref|YP_004892394.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
gi|350274669|emb|CCC81314.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
Length = 411
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 202/364 (55%), Gaps = 36/364 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC ++D+E +A +L G D E+AD+ L+ TC V+ + I +
Sbjct: 3 LYVETYGCWLAKADAEIIARRL---GGTRVDRPEDADVVLMYTCAVREDGEIRQLKRIRE 59
Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A K L+VAGC+ + +++L + + + +EV + +
Sbjct: 60 L--ASKSLIVAGCLAKARPYTIRQLAPSA---------------QLIYPNEVEGGRERTM 102
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIAD 236
AL P + +P+ VGCLG CT+C TK+ RG ++ S + +V V+ +A
Sbjct: 103 SALPEPD---GSVIYTVPLQVGCLGNCTFCVTKYTRGGAGYVKSARPDQVVEHVKRAVAK 159
Query: 237 GVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G +E++L+ +D YG D G NLP LL I+ E+ DG +RIGM+ P + +
Sbjct: 160 GAREIYLTGQDVITYGFDARWQRGWNLPDLLERILREV--DGDYRIRIGMSEPWVFGKFV 217
Query: 293 KEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIAT 350
+I ++++ VY F H+PVQSGSD VL M R YT ++R +V + EL + IAT
Sbjct: 218 DQILDIVKSDERVYRFFHLPVQSGSDRVLRRMGRRYTAQEYRELVLKIKRELNDDVFIAT 277
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
DII GFPGET+EDF +T+ L++E F +VH++++ RP T A+ M +VP AV K+RS+
Sbjct: 278 DIIVGFPGETEEDFQETLKLMEELVFDKVHVARYSRRPFTEASVMPDQVPDAVKKERSKR 337
Query: 410 LTSV 413
+S+
Sbjct: 338 ASSL 341
>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
Length = 509
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 229/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMQVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|126178768|ref|YP_001046733.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
gi|125861562|gb|ABN56751.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
Length = 374
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 176/324 (54%), Gaps = 31/324 (9%)
Query: 89 LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 148
+T++ EEAD ++NTCTV ++ M +A A + L V GC+P
Sbjct: 1 MTEHPEEADAVIVNTCTVIGATERKMLRRLALF--ADRDLYVTGCMP------------- 45
Query: 149 IVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPALDLPKVRRNKFVEILPINVGCLGAC 206
V Q+D++ V H +R +H + R ++ + GC+G C
Sbjct: 46 ---VVQLDKIRSVCTP----HVIRPDEIHERAGSV----GTRGPGATGVVQVASGCVGRC 94
Query: 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266
+YC T+ ARG L S E++ VR ++ G E+ L+ +D A+G D G +LP LL I
Sbjct: 95 SYCITRLARGRLISAPREAIADAVRALVTSGACEIQLTGQDVAAWGLDRGESLPDLLQEI 154
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
AE+P G +R GM +P +L L+ + + ++ FLH+PVQSGSD VL M R
Sbjct: 155 -AEIP--GRFAVRPGMMHPATVLGILEPLVDAYESKKIFRFLHLPVQSGSDTVLERMQRG 211
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
YT +D +VD E P M I++D I GFPGETDE+F+QT+ L++ F +V+I+++
Sbjct: 212 YTAADVLRIVDAFRERYPDMMISSDFITGFPGETDEEFSQTLELLRRAAFVKVNITRYSR 271
Query: 387 RPGTPAARMKKVPSAVVKKRSREL 410
RPGTPAA +K +P + K RSR L
Sbjct: 272 RPGTPAAALKDLPERIRKDRSRTL 295
>gi|415886653|ref|ZP_11548433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
gi|387587340|gb|EIJ79663.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
Length = 514
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 225/449 (50%), Gaps = 40/449 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K KP L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMEEIRKIDIPRVRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+YT ++ +V + +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVAL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII G+P ET+E F +T++L +E F + + PR GTPAA+M+ VP V K+R
Sbjct: 368 TTDIIVGYPNETEEQFEETLSLYREVGFESAYTFIYSPREGTPAAKMQDNVPMEVKKERL 427
Query: 408 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADG-------IHLGYV--QVLVPSTG 453
+ L ++ +A Y G I E+ +G + GY LV TG
Sbjct: 428 QRLNALVNELSRDAMKKYEGQ--------IVEVLVEGESKNNPDVLAGYTSKNKLVNFTG 479
Query: 454 --NMLGTSALVKITSVGRWSVFGEVIKIL 480
+ +G VKIT WS+ GE+++ L
Sbjct: 480 PKSAIGKIVKVKITKAKTWSLNGEMVEEL 508
>gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
Length = 423
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 188/357 (52%), Gaps = 11/357 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++ +GC+ N D + L G+ + +++E AD+ ++ TC V+ + M + +
Sbjct: 4 VAVEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARMVNRMRE 63
Query: 121 CKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRK 177
+ + P VVAGC P+ R K ++VG + +DR+ E V L+G V L R+
Sbjct: 64 LE--RVPTVVAGCFPEAYPERARKLRPDAALVGPRHLDRIPEAVRAVLRGDRVEFLGERE 121
Query: 178 KLP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ D P+ N I+PI GC C YC K ARG+L S+ E ++ RV+ +
Sbjct: 122 DIDWKADAPRELPN-LAAIVPIAEGCPNRCAYCAVKLARGNLRSFPPERILRRVKRELER 180
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+++DT YG D G N+ LL +V +L +R+GM NP ++A
Sbjct: 181 GAVEIHLTAQDTATYGLDRGTNVVELLEDVV-DLCSRYGARVRLGMFNPGHAYPISDDLA 239
Query: 297 EVL--RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
++ R +Y +H+PVQSG D VL MNR YT+ + V + TD+I
Sbjct: 240 DLFASRDDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALEVYRAFERRLGYFSFITDVIV 299
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
GFPGET+E F T+ ++ + +H S+F RPGTPAARM+ +VP V +RSR L
Sbjct: 300 GFPGETEEAFRNTLRFLERTRPHILHASRFCRRPGTPAARMEDQVPEDVKLRRSRIL 356
>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|423425910|ref|ZP_17402941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|423503549|ref|ZP_17480141.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449090716|ref|YP_007423157.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401110657|gb|EJQ18556.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|402458903|gb|EJV90643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449024473|gb|AGE79636.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 509
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 229/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus WK1]
gi|229890441|sp|B7GJM6.1|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 527
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 223/439 (50%), Gaps = 24/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 86 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 145
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ +++E E
Sbjct: 146 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 205
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 206 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 265
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 266 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 324
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + E +PG+ +
Sbjct: 325 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVAL 382
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + PR GTPAA+M VP V K+R
Sbjct: 383 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERL 442
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + + GY + LV G + +G
Sbjct: 443 QRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNFVGPKSAIGQL 502
Query: 460 ALVKITSVGRWSVFGEVIK 478
V+IT W++ GE+++
Sbjct: 503 VNVRITEAKTWTLNGEMVE 521
>gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis
768-20]
gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis
768-20]
Length = 416
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 201/359 (55%), Gaps = 34/359 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC ++D++ + L G A+ ++ +AD+ L+ TC V+ + + +
Sbjct: 3 IYVETYGCWLAKADAQIL---LQRLGGAVAESPRDADLVLVYTCAVREDGEVRQLRRLGQ 59
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKL 179
S K LVVAGC+ + ++Q+ + E++ E ++G E R + L
Sbjct: 60 LASESKRLVVAGCLAKAR----------PYTIRQVAKNAELLYPEQVEGGEGRSMS--VL 107
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIAD 236
P D + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A
Sbjct: 108 PEPD------GGLIYTVPLQVGCLGNCTFCITKYTRGGAGYVKSAPPDLVVEYVKKAVAK 161
Query: 237 GVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G KE++L+ +D YG D G NLP LL I++++ +G +RIGM+ P +
Sbjct: 162 GAKEIYLTGQDVITYGFDARWRRGWNLPDLLEKILSQV--EGDYRIRIGMSEPWVFGKFA 219
Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIAT 350
I +++ R VY + H+PVQSGSD VL M R YT ++R ++ + EL + +AT
Sbjct: 220 DAILDIVKRDERVYRYFHLPVQSGSDEVLRRMGRRYTADEYRGLISKIKRELNDDVFVAT 279
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
D+I GFPGET+EDF T+ L++E +F +VH++++ RP T A+ M +++P AV K+RS+
Sbjct: 280 DVIVGFPGETEEDFRATLRLMEELEFDKVHVARYSRRPFTEASVMPEQIPDAVKKQRSK 338
>gi|152976138|ref|YP_001375655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cytotoxicus NVH 391-98]
gi|229890423|sp|A7GRA2.1|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
391-98]
Length = 509
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 225/444 (50%), Gaps = 34/444 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T +E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LKPLKQKNPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKDAMFSKA 187
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EVRHLAANGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + + +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYTREQYLELVRKIKKTIPNVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + PR GTPAA+MK +P V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMKDNIPMEVKKERL 424
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLVPSTGN 454
+ L + F+ + + I E+ DG + GY V + P +
Sbjct: 425 QRLNELVNEFS---AKKNKKYEGQIVEVLVDGESKNNPDVLAGYTRTNKLVNFVAPKS-- 479
Query: 455 MLGTSALVKITSVGRWSVFGEVIK 478
++G VKIT WS+ GE+++
Sbjct: 480 VIGQLVKVKITEAKTWSLNGELVE 503
>gi|336114420|ref|YP_004569187.1| MiaB family RNA modification protein [Bacillus coagulans 2-6]
gi|335367850|gb|AEH53801.1| RNA modification enzyme, MiaB family [Bacillus coagulans 2-6]
Length = 450
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/446 (29%), Positives = 225/446 (50%), Gaps = 28/446 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY TD AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ E+ GV +V G Q +++ +E+ LK +
Sbjct: 63 RAVRQNPDAVVCVTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + +++P ++ L I GC CT+C ARG + S E ++ +
Sbjct: 123 KNIMKNRVYEEMEVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG+D+ NL +LL + E G +RI +
Sbjct: 182 QQLVDAGYKELVLTGIHTGGYGQDLKDYNLAMLLRDL--EEKVQGLKRVRISSIEASQLT 239
Query: 290 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ V++H V +HVP+QSGSD VL M R+YT+ F + L E +PG+ +
Sbjct: 240 D---EVIGVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE++F ++H+ + PR GTPAARMK ++ + +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQIDEEIKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWI------TEIAADGIHLG----YVQVLVPSTGNMLG 457
+ ++ + + E + + E G++ G Y++V+ P+T +M+G
Sbjct: 357 HRMIALSDQLAKEYASQFENEVLEVIPEEPFKEDPESGLYEGYTDNYLKVVFPATPDMVG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQV 483
VKIT G + +++++ V
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVMDDV 442
>gi|89100455|ref|ZP_01173317.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
gi|89084798|gb|EAR63937.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
Length = 450
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 133/448 (29%), Positives = 228/448 (50%), Gaps = 34/448 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY TD +D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQEGYERTDFESASDVYIINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINAV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL +LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + V+RH LH+P+QSGS+ VL M R+YT+ F +D L E +PG
Sbjct: 240 DEVIEVMDKSEVVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ ++ +
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQIDEEIKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLG----YVQVLVPSTGN 454
+R L S+ + E V + EI + G+++G Y++V+ P++
Sbjct: 354 ERVHRLISLSDQLAKEYASQFENEVLEVIPEEIYKEDPESGLYVGYTDNYLKVVFPASEE 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQ 482
M+G VKI+ G G+ ++++++
Sbjct: 414 MVGKIVKVKISKAGYPFNEGQFVRVVDE 441
>gi|448354903|ref|ZP_21543658.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
gi|445637234|gb|ELY90390.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
Length = 417
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 213/400 (53%), Gaps = 30/400 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y+FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + ++++++F RPGT AA MK + V K RS+E+++
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAANMKGLGGQVKKDRSKEMSAAKREL 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIH---LGYVQVLV 449
V EA+ +G E R + + + + AD + Y Q++V
Sbjct: 348 VGEAYAEMVG-ETREDVLVVEQGTADSVKCRDAAYRQLIV 386
>gi|433445654|ref|ZP_20409960.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000930|gb|ELK21818.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
Length = 526
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 223/439 (50%), Gaps = 24/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 85 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 144
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ +++E E
Sbjct: 145 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 204
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 205 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 264
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 265 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 323
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + E +PG+ +
Sbjct: 324 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVAL 381
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + PR GTPAA+M VP V K+R
Sbjct: 382 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERL 441
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + + GY + LV G + +G
Sbjct: 442 QRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNFVGPKSAVGQL 501
Query: 460 ALVKITSVGRWSVFGEVIK 478
V+IT W++ GE+++
Sbjct: 502 VNVRITEAKTWTLNGEMVE 520
>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628853|ref|ZP_17604602.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268398|gb|EJR74446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
Length = 509
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 228/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNSEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|383321487|ref|YP_005382340.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|383324657|ref|YP_005385510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|383490541|ref|YP_005408217.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|384435807|ref|YP_005650531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|451813905|ref|YP_007450357.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
gi|2501538|sp|P73127.1|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803]
gi|339272839|dbj|BAK49326.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|359270806|dbj|BAL28325.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|359273977|dbj|BAL31495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|359277147|dbj|BAL34664.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|451779874|gb|AGF50843.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
Length = 451
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 226/455 (49%), Gaps = 50/455 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G TD+ +AD+ L NTC+++ ++ + + + +
Sbjct: 9 HIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-- 171
K+ LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ G +V
Sbjct: 69 AKRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQVVA 128
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
LH + D+ K RR V + I GC C+YC + RG S T E++ G
Sbjct: 129 TESLHIME----DITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + G KEV L ++ AYGRD+ G +L L + + +G LR +
Sbjct: 185 MEVLAQQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + + L P V H+P QSG + +L AM R YT + +++ + +
Sbjct: 245 HPRYFTERLIQACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I+ D+I GFPGET+ F T+NLI+E F ++ + + PRPGTPAA S V
Sbjct: 303 PDAAISADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAAFWDNQLSEEV 362
Query: 404 K----KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYV-QVLVPSTGN-- 454
K +R L T E YL GRVE E+ +G +L QV+ + GN
Sbjct: 363 KGDRLQRLNHLVSTQAMERSQRYL---GRVE-----EVLVEGENLKSPGQVMGRTRGNRL 414
Query: 455 ---------MLGTSALVKITSVGRWSVFGEVIKIL 480
+LG + VKIT +S+ GE + ++
Sbjct: 415 TFFQGEISELLGKTVPVKITEARAFSLTGEALSLV 449
>gi|30021864|ref|NP_833495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 14579]
gi|81432671|sp|Q812Y0.1|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
Length = 509
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 228/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|423649637|ref|ZP_17625207.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
gi|401282917|gb|EJR88814.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
Length = 509
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 228/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
Length = 509
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 228/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|423585817|ref|ZP_17561904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|423641145|ref|ZP_17616763.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|423656633|ref|ZP_17631932.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|401233163|gb|EJR39659.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|401280206|gb|EJR86128.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|401290374|gb|EJR96068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
Length = 509
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 228/447 (51%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|448394368|ref|ZP_21568173.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
gi|445662410|gb|ELZ15178.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
Length = 417
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 221/430 (51%), Gaps = 31/430 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGADEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + + E+ +G +R+GM NP + +E+AEV
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLSEICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 229 AENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E++ V
Sbjct: 289 ETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSEAKREIV 348
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITSV 467
EA+ +G E R + + + + AD + Y QV+V + G G +++T+
Sbjct: 349 REAYADMVG-EVREDCLVVEQGTADSVKCRDSAYRQVIVQNASEYGLEPGDFVDLEVTAH 407
Query: 468 GRWSVFGEVI 477
FGE +
Sbjct: 408 ETMYAFGEPV 417
>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
Length = 509
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 227/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R ++A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLVANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|423418319|ref|ZP_17395408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
gi|401106592|gb|EJQ14553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
Length = 509
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETISLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|448435830|ref|ZP_21586898.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
gi|445683265|gb|ELZ35665.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
Length = 450
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 218/439 (49%), Gaps = 32/439 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I E+A+
Sbjct: 170 KELRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHDELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P E DED +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDDEDHELSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKME 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKIT 465
V EA+ +G E + + E D + Y Q++V + G +G V++T
Sbjct: 347 VVGEAYESMVGE--TFEVLVVEEGTGDSVKCRDSAYRQIIVQNATDRGVEVGDFLTVEVT 404
Query: 466 SVGRWSVFGEVIKILNQVD 484
FG+ + D
Sbjct: 405 GHNTVYAFGDPVATDEAAD 423
>gi|407979369|ref|ZP_11160185.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
gi|407413976|gb|EKF35647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
Length = 508
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 223/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K KP L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS AVL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAVLKLMARKYDRERYLELVRKIKEAMPNASL 363
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMKDNVPMRVKKERL 423
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ----VLVPSTGNMLGTS 459
+ L ++ + EG+ + + + + I GY V + +G
Sbjct: 424 QRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNI 483
Query: 460 ALVKITSVGRWSVFGEVI 477
VKIT WS+ GE++
Sbjct: 484 VKVKITQAKTWSLDGEMV 501
>gi|387926953|ref|ZP_10129632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
gi|387589097|gb|EIJ81417.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
Length = 514
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 221/443 (49%), Gaps = 40/443 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDKPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K KP L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEELVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYRLGDLMEEISKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+YT ++ +V + +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVAL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII G+P ET+E F +T++L +E F + + PR GTPAA+M+ VP V K+R
Sbjct: 368 TTDIIVGYPNETEEQFEETLSLYREVGFESAYTFIYSPREGTPAAKMQDNVPMEVKKERL 427
Query: 408 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ--VLVPSTG 453
+ L ++ +A Y G I E+ +G + GY + LV TG
Sbjct: 428 QRLNTLVNELSRDAMKKYQGQ--------IVEVLVEGESKNNPDVLAGYTRKNKLVNFTG 479
Query: 454 --NMLGTSALVKITSVGRWSVFG 474
+ +G VKIT WS+ G
Sbjct: 480 PKSAIGKIVKVKITEAKTWSLNG 502
>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
Length = 509
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 135/449 (30%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V KKR
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKKRL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|423469985|ref|ZP_17446729.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
gi|402437237|gb|EJV69261.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
Length = 509
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVK 503
>gi|342732600|ref|YP_004771439.1| MiaB-like tRNA modifying protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384455992|ref|YP_005668587.1| MiaB family RNA modification protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417965715|ref|ZP_12607202.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|417969118|ref|ZP_12610080.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|418015993|ref|ZP_12655558.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372854|ref|ZP_12964946.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330055|dbj|BAK56697.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506328|gb|EGX28622.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984335|dbj|BAK80011.1| RNA modification enzyme, MiaB family [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380335944|gb|EIA26026.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|380338487|gb|EIA27374.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|380342523|gb|EIA30968.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 434
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 228/442 (51%), Gaps = 38/442 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ T GC N D+E M L + + E AD++ INTCTV + S I+KCK
Sbjct: 5 ISTLGCRVNIYDTEIMISALKEDDFEVVSYDEFADVYCINTCTVTNTSDKKSRQFISKCK 64
Query: 123 SAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQ---QIDRVVEVVEETLKGHEVRLLH 175
++A GC PQ S+D + E++ V+I+ G + Q+ + + ET G +V +
Sbjct: 65 KINPKAIIAMVGCYPQVSKDEVSEIKDVNIILGNRFKGQLPYYIRLFLET--GKQVIKVD 122
Query: 176 RKKLPALDLP----KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L + + ++K + I GC CTYC ARG + S + VR
Sbjct: 123 DNILRNISFEDRSIRTLKDKHRAFIKIQDGCNKFCTYCIIPFARGGVCSKEPRKIFDEVR 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPF--- 287
+++++G KEV L+ +T +YG D+G+++ ++ L ++ E+ DG +R+G +P F
Sbjct: 183 SLVSNGYKEVVLTGINTTSYGDDLGIDINLVSLIELLDEI--DGLERIRVGSVDPEFFTT 240
Query: 288 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I+E + +I +++ H H+ +QSG D+VL M R+Y +S ++ VV+ L + +
Sbjct: 241 EIVERMSKIKKLMPH------FHLSLQSGCDSVLKRMRRKYDISLYKKVVEDLRREIEDV 294
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
I TDII GFPGETD++FN+T N +K K +H+ ++ R GT AA M+ +V + +K
Sbjct: 295 SITTDIIVGFPGETDDEFNETYNFLKNIKLQDMHVFKYSKRNGTKAAEMENQVDVHIKEK 354
Query: 406 RSRELTSV-----FEAFTPYLGMEGRVERIWITEIAAD----GIHLGYVQVLVPSTGNML 456
RS+ L + + YLG ++ ++ TE++ + G Y++V++ L
Sbjct: 355 RSKSLIDLNKLNKIDFQKKYLGQT--LDVLYCTELSDNNGVYGYTKNYIKVVLNDEKKYL 412
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
G +I + + G+ +K
Sbjct: 413 GKIVSTRIVDLENDHLIGQALK 434
>gi|448350753|ref|ZP_21539564.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
gi|445635625|gb|ELY88792.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
Length = 417
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 221/430 (51%), Gaps = 31/430 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP
Sbjct: 229 AEYDELYGFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDEALDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
ETD D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E++ V
Sbjct: 289 ETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSEVKRDIV 348
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITSV 467
+A+ +G E R + + + E AD + Y Q++V + G G V +T+
Sbjct: 349 ADAYADMVG-ERREDVLVVEEGTADSVKCRDSAYRQIIVQNASEHGIEPGDFIDVDVTAH 407
Query: 468 GRWSVFGEVI 477
FGE +
Sbjct: 408 ETMYAFGEPV 417
>gi|281411880|ref|YP_003345959.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
RKU-10]
gi|281372983|gb|ADA66545.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
RKU-10]
Length = 443
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 230/436 (52%), Gaps = 23/436 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + DL ++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-DLSRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAISSD 296
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
II GFP ET+EDF +T++L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPYEEKVRRMQF 356
Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--YVQVLVPSTGN--MLGTSALVK 463
L ++ + L +G+ R+ + A +G+ G ++ G M+G A VK
Sbjct: 357 LMNLQKRINRKLNERYKGKTVRVIVEAQAKNGLFYGRDIRNKIIAFEGEEWMIGRFADVK 416
Query: 464 ITSVGRWSVFGEVIKI 479
I + ++G+V+ I
Sbjct: 417 IEKITAGPLYGKVVWI 432
>gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911]
gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911]
Length = 514
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 217/453 (47%), Gaps = 48/453 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++TFGC N+ D+E MAG + GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 71 FYIRTFGCQMNEHDTEVMAGIFLSLGYEPTDTVEDANVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K KK L V GC+ Q ++ LK + V ++ G I R+ +++E E
Sbjct: 131 LKHLKKERPDLLLGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +E+ L ++ AYG+D +L L ++ E+ +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDF-TDLQYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+HL E+ +L H +H+PVQSGS VL M R+YT + +V + +P
Sbjct: 310 DDHLIEVLAKGGNLLEH------IHLPVQSGSTDVLKIMARKYTREQYLELVRKIRAAIP 363
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
TDII G+P ETDE F +T++L KE + + + PR GTPAA+MK VP V
Sbjct: 364 NATFTTDIIVGYPNETDEQFEETLSLYKEVGYESAYTFIYSPREGTPAAKMKDNVPMEVK 423
Query: 404 KKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST------ 452
K+R + L ++ EA Y G E+ +G +VL T
Sbjct: 424 KERLQRLNALVNEMSAEAMKKYHGQ--------TVEVLVEGESKNNPEVLAGYTRKNKLV 475
Query: 453 -----GNMLGTSALVKITSVGRWSVFGEVIKIL 480
+ +G VKIT WS+ GE+++ L
Sbjct: 476 NFKGPKSAIGKIVSVKITDAKTWSLNGEMVEEL 508
>gi|403384177|ref|ZP_10926234.1| hypothetical protein KJC30_05724 [Kurthia sp. JC30]
Length = 447
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 139/444 (31%), Positives = 225/444 (50%), Gaps = 29/444 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC N ++E + GY TD ++D+++INTCTV + +I +
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKEAGYERTDFDHQSDVYVINTCTVTNSGDKKSRQVIRR 63
Query: 121 C--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVE----ETLKGHEVR 172
K+ + V GC Q S ++ + GV IV G Q +++ ++E E + VR
Sbjct: 64 AVRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRQKLLGLIEDYKVERQPINAVR 123
Query: 173 -LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ + LD+P ++ L I GC CT+C ARG + S E +V + +
Sbjct: 124 NIMKNRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEQVVKQAQ 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ L+ TG YG+D+ NL +LL A+ E G LRI I +
Sbjct: 183 QLVDAGYKEIVLTGIHTGGYGQDLKDYNLAMLLRAL--ETKVKGLKRLRISSIEASQITD 240
Query: 291 HLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E+ +VLR+ + + LH+P+QSGSD VL M R+YT+ F + L E++P + I
Sbjct: 241 ---EVLDVLRNSKIIVNHLHIPIQSGSDTVLKRMRRKYTMEFFGQRLTQLKEVLPDLAIT 297
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
+D+I GFPGET+E+F +T N I++Y+F ++H+ F R GTPAARM+ +V V +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIRDYEFAELHVFPFSKRTGTPAARMEDQVDEDVKNERVH 357
Query: 409 ELTSVFEAFTPYLG--MEGRVERIWITEIAA-----DGIHLG----YVQVLVPSTGNMLG 457
L S+ + E V + EI +G+ LG Y++V T +M+G
Sbjct: 358 RLLSLNDQLAKQYASRFENEVLEVIPEEIVKAGEPNEGMLLGHTANYMKVAFEGTPDMIG 417
Query: 458 TSALVKITSVGRWSVFGEVIKILN 481
VK+T G G+ +++++
Sbjct: 418 QIVKVKVTQAGYPVSTGQFVRVMD 441
>gi|448448754|ref|ZP_21591339.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
gi|445814228|gb|EMA64195.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
Length = 441
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 140/434 (32%), Positives = 219/434 (50%), Gaps = 32/434 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P E + D +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKIT 465
V EA+ +G E + + E D + Y Q++V + G +G V++T
Sbjct: 347 VVGEAYESMVGE--TFEALVVEEGTGDSVKCRDGAYRQIIVQNATDRGVEVGDFLTVEVT 404
Query: 466 SVGRWSVFGEVIKI 479
FG+ ++I
Sbjct: 405 GHNTVYAFGDPVEI 418
>gi|206969427|ref|ZP_03230381.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
gi|229180587|ref|ZP_04307929.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
gi|229192521|ref|ZP_04319483.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
gi|365158901|ref|ZP_09355090.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|423411893|ref|ZP_17389013.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3O-2]
gi|423432321|ref|ZP_17409325.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4O-1]
gi|206735115|gb|EDZ52283.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
gi|228590945|gb|EEK48802.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
gi|228603011|gb|EEK60490.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
gi|363626189|gb|EHL77190.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|401103961|gb|EJQ11938.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3O-2]
gi|401117077|gb|EJQ24915.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4O-1]
Length = 450
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 224/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|448342799|ref|ZP_21531744.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
gi|445624632|gb|ELY78008.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
Length = 417
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 131/406 (32%), Positives = 214/406 (52%), Gaps = 32/406 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC + QG + D +++G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I DG +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGNRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GF
Sbjct: 227 VFAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P ET+ D Q++ L++E + ++++++F RPGT AA +K + V K+RS+E+++
Sbjct: 287 PTETERDHEQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTVKKERSKEMSAVKRD 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGN 454
V +A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 347 LVADAYADMVG-EVREDVLVVEEGTADSVKCRDSAYRQLIVQNASD 391
>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
Length = 509
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|42783437|ref|NP_980684.1| hypothetical protein BCE_4391 [Bacillus cereus ATCC 10987]
gi|206978420|ref|ZP_03239289.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
gi|217961800|ref|YP_002340370.1| MiaB family RNA modification protein [Bacillus cereus AH187]
gi|222097755|ref|YP_002531812.1| fe-s oxidoreductase [Bacillus cereus Q1]
gi|229141048|ref|ZP_04269590.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
gi|229198438|ref|ZP_04325142.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
gi|375286316|ref|YP_005106755.1| hypothetical protein BCN_4222 [Bacillus cereus NC7401]
gi|384182130|ref|YP_005567892.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402555555|ref|YP_006596826.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
gi|423354803|ref|ZP_17332428.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
IS075]
gi|423373811|ref|ZP_17351150.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
AND1407]
gi|423570550|ref|ZP_17546795.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A12]
gi|423574010|ref|ZP_17550129.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-D12]
gi|423604040|ref|ZP_17579933.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD102]
gi|42739366|gb|AAS43292.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
gi|206743376|gb|EDZ54814.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
gi|217065337|gb|ACJ79587.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
gi|221241813|gb|ACM14523.1| Fe-S oxidoreductase [Bacillus cereus Q1]
gi|228584941|gb|EEK43055.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
gi|228642326|gb|EEK98615.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
gi|324328214|gb|ADY23474.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358354843|dbj|BAL20015.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401085807|gb|EJP94041.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
IS075]
gi|401095212|gb|EJQ03272.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
AND1407]
gi|401203746|gb|EJR10581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A12]
gi|401212579|gb|EJR19322.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-D12]
gi|401245726|gb|EJR52079.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD102]
gi|401796765|gb|AFQ10624.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
Length = 450
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 224/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|42782856|ref|NP_980103.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 10987]
gi|81409496|sp|Q732V4.1|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 509
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|449020016|dbj|BAM83418.1| 2-methylthioadenine synthetase [Cyanidioschyzon merolae strain 10D]
Length = 707
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 146/477 (30%), Positives = 240/477 (50%), Gaps = 55/477 (11%)
Query: 47 KTGSLSPKI-----PGTET---IY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
++G L P++ P + T +Y ++TFGC N +DSE MAG+L GY T + EAD
Sbjct: 243 RSGELVPQLYARENPNSRTRRRLYNVQTFGCQMNLADSERMAGELERCGYRHTPDPYEAD 302
Query: 98 IWLINTCTVKSPSQSAMDTLIA---KCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSI 149
+ L+NTC+++ ++ + + + + K P L+VAGCV Q G + L+ + + +
Sbjct: 303 LILLNTCSIRDHAEQKVYSFLGPFVRMKEKSNPGLKLIVAGCVAQQEGVKMLRRIPALDL 362
Query: 150 V-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACT 207
V G Q +R+ +++E+ G++V + D+ K RR V + I+ GC CT
Sbjct: 363 VMGPQYANRLADLLEDVENGNQVVATEPIHI-MEDISKPRRQSQVCAWVNISYGCNERCT 421
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265
YC + RG S +VES+V V + +G +EV L ++ AYGRD+ V LL
Sbjct: 422 YCVVPYTRGLEQSRSVESIVNEVVQLKNEGYREVTLLGQNIDAYGRDMRPRVTFAQLLRH 481
Query: 266 IVAELPPDGSTMLRIGMTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ A G +R +P P +++ E+ P + + H+P Q+G D VL
Sbjct: 482 VSA----TGIDRIRAITAHPRYWSPRVIQATAEL------PNIMPYFHIPFQAGDDEVLK 531
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
AM R YT +R +++ + E +P I D I GFPGET+E F +T+ L++ + V+
Sbjct: 532 AMGRGYTAKRYRRIIEMIREYLPDAAITADAIVGFPGETEEQFQRTLELMEALQLDNVNT 591
Query: 382 SQFYPRPGTPAARMK-KVPSAVVKKRSRELTS----VFEAFTP-YLGMEGRVERIWITEI 435
+ + PRP TPAA + +VP AV +R + + +A + YL GR+E + + E+
Sbjct: 592 AAYSPRPFTPAASWENQVPEAVKMERLHRINELNMRIVDARSQRYL---GRIEEVLVEEV 648
Query: 436 AADGIHLGYV-------QVLVPSTGNM---LGTSALVKITSVGRWSVFGEVIKILNQ 482
LG +V + G + G A V+IT +S+ GE++ Q
Sbjct: 649 NPKSPELGVCGRTRTNKKVFFEAPGGIQRWRGRMANVRITQARAYSLTGELVATCPQ 705
>gi|423401401|ref|ZP_17378574.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|423477894|ref|ZP_17454609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
gi|401654391|gb|EJS71934.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|402428819|gb|EJV60911.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
Length = 509
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|415885569|ref|ZP_11547497.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
MGA3]
gi|387591238|gb|EIJ83557.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
MGA3]
Length = 450
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 138/449 (30%), Positives = 226/449 (50%), Gaps = 28/449 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQQGYERVDFEAIADVYVINTCTVTNTGDKKSPQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q +++E +E+ K +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEILAIPGVDIVVGTQDRAKMLEYIEKYKKERQPINAV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPQEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N +LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRDLEAQVK--GLKRLRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + + LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ +
Sbjct: 240 D---EVIEVLDKSKVIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLNRLKEALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMADQIDEEVKNERV 356
Query: 408 RELTSVFEAFTPYLG--MEGRV-ERIWITEIAAD---GIHLG----YVQVLVPSTGNMLG 457
L ++ + EG V E I D G++ G Y++V+ P+T M+G
Sbjct: 357 HRLIALSDQLAKEYASQFEGEVLEVIPEERFKGDPESGLYEGYTDNYLKVVFPATEEMIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDK 486
VKIT G G+ +++L++ +++
Sbjct: 417 KIVKVKITKAGYPYNEGQFVRVLDEANEQ 445
>gi|423558664|ref|ZP_17534966.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
gi|401191932|gb|EJQ98954.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
Length = 509
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 226/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y +T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYTRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVK 503
>gi|15894568|ref|NP_347917.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
gi|337736504|ref|YP_004635951.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
gi|384458011|ref|YP_005670431.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
gi|15024215|gb|AAK79257.1|AE007641_3 Fe-S oxidoreductases [Clostridium acetobutylicum ATCC 824]
gi|325508700|gb|ADZ20336.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
gi|336292009|gb|AEI33143.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
Length = 436
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 220/431 (51%), Gaps = 22/431 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + G+ + DN E+AD ++INTCTV + +I++ + A
Sbjct: 7 TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRARKA 66
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEVR-LLH 175
K V+A GC Q + E+EGV IV G + I V + +EE + V+ +
Sbjct: 67 NKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNVKDVFT 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L++ + + +K L I GC C+YC +ARG + S E ++G ++ +
Sbjct: 127 DKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIKRLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ LS +YG D+ + L++ I DG +RIG P F E
Sbjct: 186 HGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRFFDEDTISK 244
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ ++ C + H+ +QSG L MNR+YT +++ +V L E + + I TD+I G
Sbjct: 245 IKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIVG 302
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KRSRELTSVF 414
FPGETDE+F +T + +KE + ++H+ ++ PR GT AA MK + VK KRS EL +
Sbjct: 303 FPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKRSAELIELD 362
Query: 415 EA-----FTPYLGMEGRV---ERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITS 466
+ + +L E V +++ E +G Y++V+V S+ ++ VK+T
Sbjct: 363 KINEKKFMSKFLDREMDVLFEKKLEENEDLYEGYTPNYIKVVVKSSEDISRKILKVKLTE 422
Query: 467 VGRWSVFGEVI 477
+ + GE+I
Sbjct: 423 IQDEHLLGELI 433
>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217961193|ref|YP_002339761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH187]
gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus Q1]
gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|375285694|ref|YP_005106133.1| hypothetical protein BCN_3600 [Bacillus cereus NC7401]
gi|384181582|ref|YP_005567344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|423353474|ref|ZP_17331101.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|423374431|ref|ZP_17351769.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|423567333|ref|ZP_17543580.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
gi|423574621|ref|ZP_17550740.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|229890422|sp|B7HLA6.1|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|358354221|dbj|BAL19393.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401089287|gb|EJP97458.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|401094343|gb|EJQ02425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|401212146|gb|EJR18892.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|401214421|gb|EJR21151.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
Length = 509
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|423604599|ref|ZP_17580492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
gi|401245219|gb|EJR51577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
Length = 509
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|423389967|ref|ZP_17367193.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
gi|401640883|gb|EJS58609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
Length = 509
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|392960658|ref|ZP_10326124.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|421054584|ref|ZP_15517551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|421057354|ref|ZP_15520198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
gi|421065507|ref|ZP_15527248.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|421071447|ref|ZP_15532565.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392440686|gb|EIW18355.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|392447074|gb|EIW24337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392454794|gb|EIW31613.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|392458761|gb|EIW35255.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|392463262|gb|EIW39232.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
Length = 458
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 201/392 (51%), Gaps = 31/392 (7%)
Query: 45 LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
+SK + +IP E T Y T+GC NQ DSE +AGQL + GY T++ E+
Sbjct: 1 MSKPDQYNVEIPSNEVKDSNIKYFTTY--TYGCQMNQHDSERLAGQLKSIGYEYTESLED 58
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVS 148
A LINTC V+ ++ + I + K+ K + +AGC+ Q ++ K+ +
Sbjct: 59 ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118
Query: 149 -IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
I+G + ++VE+V+E K + + + + A D+P +RR K +PI GC
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 263
CTYC + RG S + ++ + + DG KE+ L ++ +YG D + LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIHQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238
Query: 264 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
A+ T+ R+ MT+ P + K I +L + H+PVQSGSDA+L
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVINTILNSKKICDHFHLPVQSGSDAILKM 292
Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
MNR YT +R +V + + +P + TDII GFPGE+DE F +T+ +KE +F +
Sbjct: 293 MNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGESDELFQETLEFLKEIRFDASYTF 352
Query: 383 QFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
+ R GTPAA M ++P V K+R ++L V
Sbjct: 353 LYSKRSGTPAATMTDQIPLVVKKERLQKLMDV 384
>gi|423452926|ref|ZP_17429779.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|423522397|ref|ZP_17498870.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
gi|401139485|gb|EJQ47047.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|401175091|gb|EJQ82294.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
Length = 509
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVK 503
>gi|373857373|ref|ZP_09600115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
gi|372453023|gb|EHP26492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
Length = 514
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 218/455 (47%), Gaps = 40/455 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGICLSLGYQPTDTVEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE 170
K KK L V GC+ Q + ++ I G I R+ +++E E
Sbjct: 131 LKVLKKERPDLLLGVCGCMSQEESVVNKILSKHPHIDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +E+ L ++ AYG+D+ + L ++ E+ G +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDL-TEMNYGLGNLMDEIRLMGVPRIRFSTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL I + + + +H+PVQSGS VL M R+YT + +V + +P + +
Sbjct: 310 DDHL--IKVLAKKGNLMEHIHLPVQSGSTDVLKIMARKYTREQYLELVQKIKAAIPDVTL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII G+P ET+E F +T++L++E F + + PR GTPAA+M VP V K+R
Sbjct: 368 TTDIIVGYPNETEEQFEETMSLVREVGFEAAYTFIYSPREGTPAAKMHDNVPLEVKKERL 427
Query: 408 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST---------- 452
+ L ++ EA Y G + E+ +G+ +VL T
Sbjct: 428 QRLNTLVNEQSAEAMKQYKGQ--------VVEVLVEGVSKNNSEVLAGYTRKSKLVNFNG 479
Query: 453 -GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDK 486
+G VKIT+ WS+ GE+++ V+ K
Sbjct: 480 PKTAIGKIVKVKITNTKTWSLNGEIVEEFEPVEVK 514
>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
Length = 509
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|402556105|ref|YP_006597376.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
gi|401797315|gb|AFQ11174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
Length = 509
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|310659093|ref|YP_003936814.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308825871|emb|CBH21909.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 454
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 221/436 (50%), Gaps = 35/436 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ +++ M GY +TD AD+++INTCTV S S +I + K
Sbjct: 29 TLGCKVNQYETDAMEHLFRDAGYEVTDFESFADVYVINTCTVTSMSDKKSRQMIRRAKKH 88
Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE-TLKGHEVR---LLHR 176
+ ++A GC Q S D + +EGV++V G +++V VE+ +K H V ++ +
Sbjct: 89 NENAIIAVVGCYSQKSPDEVIAIEGVNLVMGTSDRNKIVTEVEKLDVKDHVVEVEDIMKQ 148
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL + + K L I GC C+YC + RG + S ++ ++ V+++ +
Sbjct: 149 RVFEALSIEETY-GKTRAFLKIQEGCDRFCSYCIIPYTRGPVRSRSINDIISEVKSLAKN 207
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI----LEHL 292
G KEV L+ +YG+D+G L++ I A DG +R P I L L
Sbjct: 208 GYKEVVLTGIHVASYGKDLGD--IRLIDVIKAINNIDGIHRIRTSSVEPLIITDDFLSEL 265
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
KEI + H H+ +QSGSD+VL MNR Y +++++ VD + ++ P I TDI
Sbjct: 266 KEIDKFCPH------FHLSLQSGSDSVLERMNRRYDKAEYKSAVDKIRKIYPDAAITTDI 319
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
I GFPGE+D +F +T +++ ++HI +F PR GT AA M +V + RS L
Sbjct: 320 IVGFPGESDAEFEETRAYLEDINLYEMHIFKFSPREGTKAAAMDNQVKPEIKNHRSEVLI 379
Query: 412 SV-----FEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALV 462
+ E +G E V + E + +GI+ G YV+V V S +++G A V
Sbjct: 380 ELAKKNKLEFEKKLVGKEAEV----LFESSENGIYEGHTTNYVKVYVQSDLDLIGEIARV 435
Query: 463 KITSVGRWSVFGEVIK 478
I + +FG++I+
Sbjct: 436 NIDRLENKKIFGKIIQ 451
>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
Length = 509
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 223/447 (49%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST---------- 452
+ L ++ E Y G I E+ DG +VL T
Sbjct: 425 QRLNTLVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNAEVLAGYTRTNKLVNFVA 476
Query: 453 -GNMLGTSALVKITSVGRWSVFGEVIK 478
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|423395390|ref|ZP_17372591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-1]
gi|423406265|ref|ZP_17383414.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-3]
gi|401654801|gb|EJS72340.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-1]
gi|401660259|gb|EJS77741.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-3]
Length = 450
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 221/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|427414198|ref|ZP_18904388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
gi|425714574|gb|EKU77577.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
Length = 436
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/438 (31%), Positives = 222/438 (50%), Gaps = 28/438 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+SDSE +A QL GY T+N EEAD+ ++NTC V+ ++ + I +
Sbjct: 5 YIFTYGCQMNESDSERLAHQLETAGYTNTENFEEADLIILNTCCVRETAEHKIYGRIGEL 64
Query: 122 KSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K K L++A GC+ Q ++ K + IV G + + E+V E + H+ ++
Sbjct: 65 KHLKEKNKNLIIAITGCMAQKNQADMFKRAPHIDIVLGTHNLRHINEMVAEVQRTHKHQI 124
Query: 174 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +L F +PI GC CTYC H RG S +E++V V+
Sbjct: 125 NIEMDNTVLHELEAKPMGTFSAWVPIMNGCNKFCTYCIVPHVRGREISRPIEAIVEDVKK 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ G KE+ L ++ +YG D G + L++A+ +P G +R MT+ P +
Sbjct: 185 LGQSGHKEITLLGQNVNSYGLDFKDGTHFGDLIDALDG-IP--GIERIRY-MTSHPQDMN 240
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
KE+ + L R V + LH+P+QSGS+ +L MNR YT+ ++ ++D E + G+ +
Sbjct: 241 --KEMIDALGRSTNVVTQLHLPIQSGSNRILQKMNRRYTVEHYKELIDYCREKIKGLTLT 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
TD+I GFPGET+EDF T+ L+K ++ + F R GTPAA M +VP V + R +
Sbjct: 299 TDLIVGFPGETEEDFQATLQLLKNIRYDMAYTFIFSKRSGTPAATMADQVPEEVKRVRLQ 358
Query: 409 ELTSVFEAFTPYLG--MEGRVERIWIT------EIAADGIHLGYVQVLVPSTGNM-LGTS 459
L V + L MEG+ I + E G G +L P N+ +G +
Sbjct: 359 ALMDVQNEISLELNKEMEGKTYEIIVEGPSRNDEDVWFGRTSGNKMILFPKDENLKIGQT 418
Query: 460 ALVKITSVGRWSVFGEVI 477
++ W ++G ++
Sbjct: 419 VNARVDRAQTWILYGTIV 436
>gi|423458045|ref|ZP_17434842.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
gi|401148429|gb|EJQ55922.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
Length = 509
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|163941460|ref|YP_001646344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
weihenstephanensis KBAB4]
gi|229890426|sp|A9VS16.1|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
weihenstephanensis KBAB4]
Length = 509
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAF-----TPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ +G + GY + V +
Sbjct: 425 QRLNTLVNEYGVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|379003862|ref|YP_005259534.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
gi|375159315|gb|AFA38927.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
Length = 416
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 200/362 (55%), Gaps = 32/362 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G + E+AD+ +I TC V+ + I +
Sbjct: 5 YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+K +VVAGC L +L +I R++ E ++G + R + K LP
Sbjct: 62 AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 238
+ + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A G
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164
Query: 239 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
KE++L+ +D YG D+ G +LP LL I+ E+ +G +RIGM+ P
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222
Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDI 352
+ ++++ VY + H+PVQSGSD VL AM R YT+ ++R +V + + + +ATDI
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDKVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDI 282
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
I GFPGE ++DF ++V L++E + +VH+++F PRP T AA M ++VP A K+RS+ L+
Sbjct: 283 IVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 342
Query: 412 SV 413
V
Sbjct: 343 EV 344
>gi|260438409|ref|ZP_05792225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
DSM 2876]
gi|292808995|gb|EFF68200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
DSM 2876]
Length = 473
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 228/443 (51%), Gaps = 27/443 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G+ T +++TFGC N DSE +AG L A G+ TDN EEAD + NTC+V+ + + +
Sbjct: 36 GSLTYHIQTFGCQMNARDSEKLAGILEAAGFVHTDN-EEADFVIYNTCSVRENANNRLYG 94
Query: 117 LIAKCKSAKKP-----LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETL 166
+ + K KK + + GC+ Q ++++++ + IV G I + E+V L
Sbjct: 95 HLGRMKVVKKNNPDMLIAICGCMMQEPDEIEKIKTKYKFIDIVFGTHNIFKFAELVHTKL 154
Query: 167 --KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+G + + DLP VR+ F + I GC C+YC + RG S +
Sbjct: 155 NSEGMIIDIWKDTNQIVEDLPDVRKYTFKSGVNIMYGCNNFCSYCIVPYVRGRERSREPK 214
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMT 283
++ V + +GVKEV L ++ +YG+ + PI ++ E+ +G +R
Sbjct: 215 DIIREVERFVKEGVKEVMLLGQNVNSYGKTL--ENPISFAELLKEVSKVEGLERIRFMTP 272
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + L E V P V +H+P+QSGS +L MNR YT + +V + + +
Sbjct: 273 HPKDLSDELIETMAVT--PKVCHHIHLPLQSGSSRILKLMNRHYTKESYLELVKKIRKRM 330
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
P + TDII GFPGET+EDFN T+++++E +F + + R GTPAA M +++P V
Sbjct: 331 PDAALTTDIIVGFPGETEEDFNDTMDVVREAEFDSAYTFIYSKREGTPAASMTEQIPEEV 390
Query: 403 VKKR-SRELTSVFEAFTPYLGME-GRVERIWITEIAA--DGIHLGYVQ--VLVPSTGN-- 454
K+R R L V E+ G++ G+ ++ + E+ +G+ G ++ LV GN
Sbjct: 391 TKERFDRLLKQVGESSKKRCGLDVGKTLKVLVEEVNQNHEGLLTGRLENNTLVHFKGNSS 450
Query: 455 MLGTSALVKITSVGRWSVFGEVI 477
++GT VK+ + GE++
Sbjct: 451 LVGTICDVKLNESKGFYYIGELV 473
>gi|336113897|ref|YP_004568664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
gi|335367327|gb|AEH53278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
Length = 515
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 224/442 (50%), Gaps = 24/442 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY T+ E+AD+ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K KP + V GC+ Q ++ L++ V +V G I R+ +++E K
Sbjct: 131 LKPLKTEKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPYILKEAYMSKA 190
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D +L L ++ +L +R ++P
Sbjct: 251 EVRELAAKGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT + +V + +P + +
Sbjct: 310 DDRLIEV--LAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIKAAIPDVAL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+TDII GFP ET+E F +T++L KE F + + PR GTPAARMK +P V K+R
Sbjct: 368 STDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNIPMEVKKERL 427
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + A++ EG+V + + + + I GY + LV G + +G
Sbjct: 428 QRLNELVNAYSKAAMEKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAIGKL 487
Query: 460 ALVKITSVGRWSVFGEVIKILN 481
VKIT WS+ GE++ +L+
Sbjct: 488 VQVKITKAKTWSLDGEMVAVLD 509
>gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
Length = 438
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 223/443 (50%), Gaps = 30/443 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNM- 455
R ++L + + L MEG+V I + +A G G VL P +
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELT 414
Query: 456 LGTSALVKITSVGRWSVFGEVIK 478
+G + I W +G + K
Sbjct: 415 IGDTVPAYIDKAQTWVCYGTIQK 437
>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|407706177|ref|YP_006829762.1| uridylate kinase [Bacillus thuringiensis MC28]
gi|423378442|ref|ZP_17355726.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|423441498|ref|ZP_17418404.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|423448276|ref|ZP_17425155.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|423464572|ref|ZP_17441340.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|423533914|ref|ZP_17510332.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|423540817|ref|ZP_17517208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|423547056|ref|ZP_17523414.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|423615966|ref|ZP_17591800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|423623153|ref|ZP_17598931.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|401128870|gb|EJQ36553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|401172005|gb|EJQ79226.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|401178777|gb|EJQ85950.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|401259926|gb|EJR66100.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|401260503|gb|EJR66676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|401635209|gb|EJS52965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|402418159|gb|EJV50459.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|402420839|gb|EJV53110.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|402464133|gb|EJV95833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|407383862|gb|AFU14363.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis MC28]
Length = 509
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 226/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPSAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E Y G + E+ DG + GY + V +
Sbjct: 425 QRLNTLVNGLAVEKNNRYKGQ--------VVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|423612521|ref|ZP_17588382.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD107]
gi|401246110|gb|EJR52462.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD107]
Length = 450
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 221/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + G EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218904900|ref|YP_002452734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH820]
gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|376267665|ref|YP_005120377.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|423550478|ref|ZP_17526805.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
gi|229890419|sp|B7JJ50.1|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890697|sp|A0RHE4.2|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|364513465|gb|AEW56864.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|401190094|gb|EJQ97144.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
Length = 509
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|423483363|ref|ZP_17460053.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
gi|401140914|gb|EJQ48469.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
Length = 560
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 119 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 178
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 179 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 238
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 239 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 298
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 299 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 357
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 358 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 415
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 416 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 475
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ DG + GY + V +
Sbjct: 476 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 527
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 528 SKSLIGQLVKVKVTDAKTWSLNGELVE 554
>gi|228923063|ref|ZP_04086355.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|423634866|ref|ZP_17610519.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD156]
gi|228836561|gb|EEM81910.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401278852|gb|EJR84782.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD156]
Length = 450
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 224/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + G EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514]
gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM
13514]
Length = 416
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 200/362 (55%), Gaps = 32/362 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G + E+AD+ +I TC V+ + I +
Sbjct: 5 YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+K +VVAGC L +L +I R++ E ++G + R + K LP
Sbjct: 62 AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 238
+ + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A G
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164
Query: 239 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
KE++L+ +D YG D+ G +LP LL I+ E+ +G +RIGM+ P
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222
Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDI 352
+ ++++ VY + H+PVQSGSD VL AM R YT+ ++R +V + + + +ATDI
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDRVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDI 282
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
I GFPGE ++DF ++V L++E + +VH+++F PRP T AA M ++VP A K+RS+ L+
Sbjct: 283 IVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 342
Query: 412 SV 413
V
Sbjct: 343 EV 344
>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis str. Al Hakam]
gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
str. Al Hakam]
Length = 524
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 379
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 439
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 440 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 491
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 492 PKS--LIGQLVKVKVTDAKTWSLNGELVE 518
>gi|448459772|ref|ZP_21596822.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
gi|445808224|gb|EMA58298.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
Length = 440
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 219/431 (50%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ ++ LVV GC+ + E V +I EV L G E +
Sbjct: 63 ELEAETAELVVTGCMALAQGEAFEEADVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE+ V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVETNVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDKGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
R+ +Y F+H PVQSGSD VL M R++ + FR VV T + + ++TD I GFP
Sbjct: 228 FARNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVATFDDRLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
E++ D ++++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 288 TESEADHERSMDLLTEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEV 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V EA+ +G E + + E D + Y Q++V G +G V++T
Sbjct: 348 VGEAYESMVGE--TFEVLVVEEGTGDSVKCRDGAYRQIIVQKATERGVDVGDFLEVEVTG 405
Query: 467 VGRWSVFGEVI 477
FG+ +
Sbjct: 406 HNTVYAFGDPV 416
>gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
Length = 417
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/400 (33%), Positives = 208/400 (52%), Gaps = 30/400 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL+ I A +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLSEICA---IEGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E++
Sbjct: 288 TETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSEVKREI 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLV 449
V EA+ +G E R + + + E AD + Y QV+V
Sbjct: 348 VREAYADMVG-EVREDCLVVEEGTADSVKCRDSAYRQVIV 386
>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 509
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|401679751|ref|ZP_10811675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
gi|400218878|gb|EJO49749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
Length = 438
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 222/443 (50%), Gaps = 30/443 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKDLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVKRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNM- 455
R ++L + + L MEG V I + +A G G VL P +
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGHVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELT 414
Query: 456 LGTSALVKITSVGRWSVFGEVIK 478
+G + I W +G + K
Sbjct: 415 IGDTVPAYIDKAQTWVCYGTIQK 437
>gi|448502690|ref|ZP_21612711.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
gi|445693887|gb|ELZ46027.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
Length = 440
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 217/441 (49%), Gaps = 50/441 (11%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ LVV GC+ L + E + V + +LH ++
Sbjct: 63 ELSETTAELVVTGCMA-----LAQGEMFADADV-----------------DAEILHWDEV 100
Query: 180 PALDL----PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
PA L P V + V +LPI GC+ C+YC TK A G + S V V +
Sbjct: 101 PAYVLNGECPTVTPDAEPVLDGVVGLLPIARGCMSNCSYCITKFATGRVDSPPVAENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R ++ G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I
Sbjct: 161 ARALVHAGAKEIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGI 217
Query: 289 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+E+AEV + +Y F+H PVQSGSD VL M R++ + FR VVDT E +
Sbjct: 218 HGIHEELAEVFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVDTFDERLDHWT 277
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
++TD I GFP E++ D ++++L+ E + ++++++F RPGT AA MK + V K+RS
Sbjct: 278 LSTDFIVGFPTESEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERS 337
Query: 408 RELTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGNM---L 456
+ ++ V EA+ +G E + + E D + Y Q++V + +
Sbjct: 338 KAMSELKMEVVGEAYESMVGE--TFEVLVVEEGTGDSVKCRDGAYRQIIVQGAADRGVEV 395
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G V++T FG+ +
Sbjct: 396 GDFLTVEVTGHNTVYAFGDPV 416
>gi|423611991|ref|ZP_17587852.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
gi|401246998|gb|EJR53342.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
Length = 509
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 227/451 (50%), Gaps = 48/451 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRHPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 404 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----V 447
K+R + L ++ + Y+G I E+ DG + GY + V
Sbjct: 421 KERLQCLNTLVNEYAINKNKHYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLV 472
Query: 448 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478
++ +++G VK+T WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELVK 503
>gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
Length = 514
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/445 (30%), Positives = 223/445 (50%), Gaps = 24/445 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L+ ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLSDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425
Query: 407 SRELTSVFEAFT--PYLGMEGRVERIWI--TEIAADGIHLGYVQ--VLVPSTG--NMLGT 458
+ L ++ EG+V + T + + GY + LV G +G
Sbjct: 426 LQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKGPREAIGQ 485
Query: 459 SALVKITSVGRWSVFGEVIKILNQV 483
VK+ ++S+ GE + NQV
Sbjct: 486 LVDVKVKEAKQYSLNGEFLHFHNQV 510
>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
Length = 524
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 379
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 439
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 440 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 491
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G +K+T WS+ GE+++
Sbjct: 492 PKS--LIGQLVKIKVTDAKTWSLNGELVE 518
>gi|423598916|ref|ZP_17574916.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
gi|401237186|gb|EJR43643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
Length = 509
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 226/451 (50%), Gaps = 48/451 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 404 KKRSRELTSVFEAFTP-----YLGMEGRVERIWITEIAADG-------IHLGYVQ----V 447
K+R + L ++ + Y+G I E+ +G + GY + V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKCYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLV 472
Query: 448 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478
++ +++G VKIT WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|30263778|ref|NP_846155.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Ames]
gi|47529199|ref|YP_020548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. 'Ames Ancestor']
gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Sterne]
gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813320|ref|YP_002813329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. CDC 684]
gi|229602893|ref|YP_002868014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. A0248]
gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CNEVA-9066]
gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A1055]
gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Western North America USA6153]
gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Kruger B]
gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Vollum]
gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Australia 94]
gi|386737595|ref|YP_006210776.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|421639527|ref|ZP_16080118.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
gi|81583703|sp|Q81WR0.1|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CDC 684]
gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A0248]
gi|384387447|gb|AFH85108.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|403393192|gb|EJY90437.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
Length = 509
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G +K+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKIKVTDAKTWSLNGELVE 503
>gi|448366100|ref|ZP_21554354.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
gi|445654709|gb|ELZ07560.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
Length = 417
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/429 (31%), Positives = 220/429 (51%), Gaps = 29/429 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKKLP 180
L + GC+ L + E + V Q+ EV E G E P
Sbjct: 65 SEETADLFITGCMA-----LAQGEEFAQADVDSQVLHWDEVPEAVTNG-ECPTTTPDAEP 118
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE
Sbjct: 119 ILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKE 171
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 172 IRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVFA 229
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP E
Sbjct: 230 EYDELYGFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDEALEYWTLSTDFIVGFPTE 289
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VF 414
TD D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E++ V
Sbjct: 290 TDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSEVKRDIVA 349
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITSVG 468
+A+ +G E R + + + E AD + Y Q++V + G G + +T+
Sbjct: 350 DAYADMVG-ERREDVLVVEEGTADSVKCRDSAYRQIIVQNASEHGIEPGDFIDLDVTAYE 408
Query: 469 RWSVFGEVI 477
FGE +
Sbjct: 409 TMYAFGEPV 417
>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. WCH70]
gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
Length = 523
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 222/439 (50%), Gaps = 24/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK RR + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVIENLPKARRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + E +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKEAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII GFP ET+E F +T++L +E +F + + PR GTPAA+M VP V K+R
Sbjct: 379 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDNVPMEVKKERL 438
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + + GY + LV G + +G
Sbjct: 439 QRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNFIGPKSAIGKL 498
Query: 460 ALVKITSVGRWSVFGEVIK 478
V+IT W++ GE+++
Sbjct: 499 VKVRITEAKTWTLNGEMVE 517
>gi|389573169|ref|ZP_10163244.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
gi|388426866|gb|EIL84676.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
Length = 508
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 221/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA MK VP V K+R
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAANMKDNVPMRVKKERL 423
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ----VLVPSTGNMLGTS 459
+ L ++ + EG+ + + + + I GY V + +G
Sbjct: 424 QRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNI 483
Query: 460 ALVKITSVGRWSVFGEVI 477
VKIT WS+ GE++
Sbjct: 484 VKVKITQAKTWSLDGEMV 501
>gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|384187776|ref|YP_005573672.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676093|ref|YP_006928464.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|423581983|ref|ZP_17558094.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|423635455|ref|ZP_17611108.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|452200154|ref|YP_007480235.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401212862|gb|EJR19603.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|401278206|gb|EJR84142.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|409175222|gb|AFV19527.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|452105547|gb|AGG02487.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 509
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|423488895|ref|ZP_17465577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
gi|423494620|ref|ZP_17471264.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|423498589|ref|ZP_17475206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|401151681|gb|EJQ59127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|401159247|gb|EJQ66632.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|402433250|gb|EJV65304.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
Length = 509
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 226/451 (50%), Gaps = 48/451 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 404 KKRSRELTSVFEAFTP-----YLGMEGRVERIWITEIAADG-------IHLGYVQ----V 447
K+R + L ++ + Y+G I E+ +G + GY + V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKCYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLV 472
Query: 448 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478
++ +++G VKIT WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
Length = 509
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 226/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPALIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ +G + GY + V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1]
Length = 400
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/389 (30%), Positives = 197/389 (50%), Gaps = 32/389 (8%)
Query: 61 IYMKTFGCSHNQSDSE-YMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY +++GC+ +S+S Y+ L + ++ EEAD+ LI TC V ++ M I+
Sbjct: 3 IYFESYGCTLQKSESSLYLNKLLKDENNQIVNSPEEADLSLIGTCVVIKHTEDRMVKRIS 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ V GC+ + + E V + LK E R + L
Sbjct: 63 SLSKVSGNVQVLGCLATVNGNTIESGNVQV----------------LKPREFRSFYEGDL 106
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+++ ++ + +PIN GC G+C +C + ARG L S ++ +V +V + +K
Sbjct: 107 DGIEI----KSDIYDGIPINQGCTGSCNFCISHIARGKLLSRGIDKIVNQVNMELDRNIK 162
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ +SS DT AYG+DIG +L L+N I + D LR+GM P + L ++ +
Sbjct: 163 EIRISSLDTAAYGKDIGTDLAELVNRISS---IDRDFYLRVGMLEPRNTYDILDKLVDAY 219
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
RH V+ FLH+PVQS + VLSAMNREYT+ + V + P M IATDII G+ +
Sbjct: 220 RHDRVFKFLHLPVQSAENNVLSAMNREYTIEEAEAVWQKFHDAFPDMSIATDIILGYYND 279
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF----- 414
+ F +T+ +++Y +++++F PRP T + S ++K+ S E+ S+
Sbjct: 280 SRAGFEKTMKFLEKYNPDIINVTRFSPRPYTKDYNKTPLNSNLLKEWSNEIISLHREQME 339
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHLG 443
+ YLG E E++ ITE +G +G
Sbjct: 340 KKLDSYLGRE---EKVLITEKGKNGTMVG 365
>gi|423367759|ref|ZP_17345191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
gi|401083412|gb|EJP91670.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
Length = 510
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 226/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ +G + GY + V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|423511805|ref|ZP_17488336.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
gi|402450066|gb|EJV81900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
Length = 509
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 226/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ +G + GY + V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|387929785|ref|ZP_10132462.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
PB1]
gi|387586603|gb|EIJ78927.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
PB1]
Length = 450
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 228/449 (50%), Gaps = 28/449 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQQGYERVDFEAIADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q +++E +E+ K +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEILAIPGVDIVVGTQDRVKMLEHIEQYKKERQPINAV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAKLLRDLEAQVK--GLKRLRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + + LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ +
Sbjct: 240 D---EVIEVLDKSEVIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERINRLKEALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N +KE+KF ++H+ + R GTPAARM+ ++ V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFVKEHKFSELHVFPYSKRTGTPAARMENQIDEEVKNERV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L ++ + EG+V + E G++ G Y++++ P++ +M+G
Sbjct: 357 HRLIALSDQLAKEYASQFEGQVLEVIPEERYKEAPESGLYEGYTDNYLKLVFPASEDMVG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDK 486
VKIT G G+ +K+L+++ ++
Sbjct: 417 KIVKVKITKAGYPYNEGQFVKVLDEIHEQ 445
>gi|229093380|ref|ZP_04224485.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
gi|228689974|gb|EEL43777.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
Length = 478
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 147/482 (30%), Positives = 238/482 (49%), Gaps = 29/482 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNE 517
VKIT G + +++L D K ++RI ++ + S E + N
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVLED-DVKKGISKRIKKSMQTETICMLSFFVEKLSTENV 475
Query: 518 PD 519
D
Sbjct: 476 RD 477
>gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|423518409|ref|ZP_17494890.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|423592285|ref|ZP_17568316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|401161136|gb|EJQ68504.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|401230527|gb|EJR37034.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
Length = 509
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ +G + GY + V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|421507314|ref|ZP_15954234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
gi|401822448|gb|EJT21598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
Length = 455
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 14 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 73
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 74 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 133
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 134 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 193
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 194 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 252
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 253 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 310
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 311 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 370
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 371 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 422
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G +K+T WS+ GE+++
Sbjct: 423 PKS--LIGQLVKIKVTDAKTWSLNGELVE 449
>gi|448384078|ref|ZP_21563076.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
gi|445659067|gb|ELZ11879.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
Length = 417
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 220/429 (51%), Gaps = 33/429 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDALEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--- 414
ETD D Q++ L++E + ++++++F RPGT AA +K + + K+RS+E++ V
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKREI 347
Query: 415 --EAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
EA+ +G E R + + + + AD + Y Q++V + G G ++IT+
Sbjct: 348 VGEAYADMVG-EVREDCLVVEDGTADSVKCRDSAYRQIIVQNADDYGIAPGDFVDLEITA 406
Query: 467 VGRWSVFGE 475
FGE
Sbjct: 407 HETMYAFGE 415
>gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
Length = 438
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 223/443 (50%), Gaps = 30/443 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVELADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNM- 455
R ++L + + L MEG+V I + +A G G VL P +
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELT 414
Query: 456 LGTSALVKITSVGRWSVFGEVIK 478
+G + I W +G + K
Sbjct: 415 IGDTVPAYIDKAQTWVCYGTIQK 437
>gi|423669348|ref|ZP_17644377.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|423674524|ref|ZP_17649463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
gi|401298475|gb|EJS04075.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|401310075|gb|EJS15408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
Length = 509
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAF-----TPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ +G + GY + V +
Sbjct: 425 QRLNTLVNEYGVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|423661388|ref|ZP_17636557.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|401301429|gb|EJS07018.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
Length = 509
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 226/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ + Y+G I E+ +G + GY + V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|423582518|ref|ZP_17558629.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD014]
gi|401213397|gb|EJR20138.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD014]
Length = 450
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 223/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + G EG V I E +G+++G Y++++ ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGLEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|418620502|ref|ZP_13183306.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
gi|374822632|gb|EHR86652.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
Length = 514
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/445 (30%), Positives = 222/445 (49%), Gaps = 24/445 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425
Query: 407 SRELTSVFEAFT--PYLGMEGRVERIWI--TEIAADGIHLGYVQ--VLVPSTG--NMLGT 458
+ L ++ EG+V + T + + GY + LV G +G
Sbjct: 426 LQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKGPREAIGQ 485
Query: 459 SALVKITSVGRWSVFGEVIKILNQV 483
VK+ ++S+ GE + NQV
Sbjct: 486 LVDVKVKEAKQYSLNGEFLHFHNQV 510
>gi|448424292|ref|ZP_21582342.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
gi|445682285|gb|ELZ34704.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
Length = 441
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/433 (32%), Positives = 218/433 (50%), Gaps = 32/433 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLGDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P E + D +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKIT 465
V EA+ +G E + + E D + Y Q++V + G +G V++T
Sbjct: 347 VVGEAYESMVGE--TFEALVVEEGTGDSVKCRDGAYRQIIVQNATDRGVEVGDFLTVEVT 404
Query: 466 SVGRWSVFGEVIK 478
FG+ ++
Sbjct: 405 GHNTVYAFGDPVE 417
>gi|423528366|ref|ZP_17504811.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
gi|402452029|gb|EJV83848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
Length = 509
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|443319923|ref|ZP_21049066.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
gi|442790366|gb|ELR99956.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
Length = 451
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 229/455 (50%), Gaps = 46/455 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+ ++ TFGC N++DSE MAG L G+ +++ +A++ L NTCT++ ++ + +
Sbjct: 9 TQRYHITTFGCQMNKADSERMAGILEEMGFEWSEDPNQANLILYNTCTIRDNAEQKVYSY 68
Query: 118 IAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ + K+ L+VAGCV Q G + L+ + + +V G Q +++ ++E+ G+
Sbjct: 69 LGRQAKRKQTEPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANQLENLLEQVFAGN 128
Query: 170 EVRLLHRKKLPAL-DLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
+V + + + L D+ K RR V +NV GC CTYC + RG S T E++
Sbjct: 129 QV--VATEAIEILEDITKPRRESQVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAI 185
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRI 280
+ T+ G KE+ L ++ AYGRD+ G +L + + G +R
Sbjct: 186 RKEMETLGQQGYKEITLLGQNIDAYGRDLPGTTSTGRHLHTFTDLLHYVHDVQGIERIRF 245
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P + E L + L P V H+P QSG + +L AM R YT +R +++ +
Sbjct: 246 ATSHPRYFTERLIRACQEL--PKVCKHFHIPFQSGDNQILKAMARGYTREKYRGIIEKIR 303
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400
E +P I+ D+I GFPGET+ F +T+ L++E F V+ + + PRPGTPAA + + S
Sbjct: 304 EYMPDAAISADVIVGFPGETEAQFEKTLELVEEISFDLVNTAAYSPRPGTPAALLSEQLS 363
Query: 401 AVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGN 454
VK +R L S+ E YL GR+E + + E + H QV+ + GN
Sbjct: 364 ETVKSDRLQRLNHLVSIKATERRDRYL---GRIEEVLVEEKNSKNPH----QVMGRTQGN 416
Query: 455 ML-----------GTSALVKITSVGRWSVFGEVIK 478
L G VKIT +S+ G +++
Sbjct: 417 SLTFFDGEIEQLRGKLVKVKITETRAFSLTGVMVE 451
>gi|218898872|ref|YP_002447283.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus G9842]
gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558900|ref|YP_006601624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|423359242|ref|ZP_17336745.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|423561820|ref|ZP_17538096.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|434376830|ref|YP_006611474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
gi|229890420|sp|B7ITM4.1|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|401085114|gb|EJP93360.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|401202077|gb|EJR08942.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|401787552|gb|AFQ13591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|401875387|gb|AFQ27554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
Length = 509
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|392961815|ref|ZP_10327269.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|421055727|ref|ZP_15518689.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|421059013|ref|ZP_15521645.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
gi|421067117|ref|ZP_15528631.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|421072487|ref|ZP_15533596.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392439492|gb|EIW17203.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|392445687|gb|EIW22998.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392450855|gb|EIW27864.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|392453382|gb|EIW30263.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|392459694|gb|EIW36079.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
Length = 435
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/439 (31%), Positives = 216/439 (49%), Gaps = 38/439 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ ++E M G GY + + AD+++INTC+V + +I +
Sbjct: 8 TLGCKVNQFETEIMEGLFKQRGYEMVPFDQVADVYVINTCSVTHLGEKKSRQIIRRAIRL 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEET--------LKGHEVR 172
+ K + VAGC Q S ++++ +EGV IVG Q R+V++VE+ + + ++
Sbjct: 68 NPKAIVAVAGCYAQVSPQEIEAIEGVKVIVGTQDRQRIVDLVEQAAHCMSPVNIVTNIMK 127
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + +P D P R L I GC CTYC +ARG L S + S++
Sbjct: 128 AEYFEDIPLFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRPLSSIIQETEK 183
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+IA G KE+ L+ GAYGRD+ + L + + A L G LR+G I + L
Sbjct: 184 LIAAGFKEIVLTGIHLGAYGRDMEDEIT-LADVVRAILKIQGLVRLRLGSLESIEISDEL 242
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IA + + + S LH+P+Q+G VL AMNR YTL +++ ++ + V + I+TDI
Sbjct: 243 --IALMKQDDRLCSHLHLPLQAGDATVLKAMNRHYTLGEYQQLIANIRNKVEDIAISTDI 300
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA------------RMKKVPS 400
I GFPGET E FN + +++ F ++HI + R GTPAA R ++
Sbjct: 301 IVGFPGETPEMFNNALAFVEKMNFSRMHIFPYSRRSGTPAAEYSGQIPEEEKRRRVQIMQ 360
Query: 401 AVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGT 458
+ +K++ E F FT ME + +E DG+ Y++V NM G
Sbjct: 361 ELAEKKADEFLQSFLNRQFTVLFEMESQK-----SENIIDGLTGNYIRVYTSGNQNMQGK 415
Query: 459 SALVKITSVGRWSVFGEVI 477
S V + R V+G+++
Sbjct: 416 SFQVILEKPYRDGVWGKIV 434
>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|386758424|ref|YP_006231640.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430758878|ref|YP_007209599.1| hypothetical protein A7A1_3386 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|384931706|gb|AFI28384.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430023398|gb|AGA24004.1| Hypothetical protein YmcB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 509
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 221/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + I GY + LV G +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|423385277|ref|ZP_17362533.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
gi|401635333|gb|EJS53088.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
Length = 509
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|418324135|ref|ZP_12935386.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pettenkoferi VCU012]
gi|365227632|gb|EHM68824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pettenkoferi VCU012]
Length = 529
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 194/381 (50%), Gaps = 21/381 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG LSA GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 84 TFMIKTYGCQMNAHDTEVMAGILSALGYQPTEDINTADVILINTCAIRENAENKVFSEIG 143
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K K+ L V GC+ Q ++ LK + V ++ G I R+ E++EE K
Sbjct: 144 NLKHLKRERPDVLLGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHRLPEILEEAYLSK 203
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 204 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRKPEDII 263
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +EV L ++ +YG+DI L L ++A++ +R ++P
Sbjct: 264 QEVRELAREGYQEVTLLGQNVNSYGKDID-GLDYGLGDLLADISKIDIPRVRFTTSHPWD 322
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+YT + +VD + +P +
Sbjct: 323 FTDRMIEV--IAQGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLNLVDRIKAQIPDVA 380
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E F + + R GTPAARMK VP V K R
Sbjct: 381 LTTDIIVGYPNETEEQFEETLSLYDEVGFEHAYTYLYSERDGTPAARMKDDVPKEVKKDR 440
Query: 407 SRELTSVF-----EAFTPYLG 422
+ L EA PY G
Sbjct: 441 LQRLNRKVAAYSGEAMKPYEG 461
>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52141716|ref|YP_085113.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus E33L]
gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|81395139|sp|Q6HF43.1|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81686624|sp|Q636Q4.1|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
synthetase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
synthetase [Bacillus cereus E33L]
gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
Length = 509
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 226/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ E Y G I E+ DG + GY V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + ++G VK+T WS+ GE+++
Sbjct: 477 PKS--LIGQLVKVKVTDAKTWSLNGELVE 503
>gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
Length = 514
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 134/445 (30%), Positives = 222/445 (49%), Gaps = 24/445 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISNIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425
Query: 407 SRELTSVFEAFT--PYLGMEGRVERIWI--TEIAADGIHLGYVQ--VLVPSTG--NMLGT 458
+ L ++ EG+V + T + + GY + LV G +G
Sbjct: 426 LQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKGPREAIGQ 485
Query: 459 SALVKITSVGRWSVFGEVIKILNQV 483
VK+ ++S+ GE + NQV
Sbjct: 486 LVDVKVKEAKQYSLNGEFLHFHNQV 510
>gi|157692385|ref|YP_001486847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pumilus SAFR-032]
gi|229890424|sp|A8FDH0.1|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
Length = 508
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/438 (29%), Positives = 222/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERL 423
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ----VLVPSTGNMLGTS 459
+ L ++ + EG+ + + + + I GY V + +G
Sbjct: 424 QRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNI 483
Query: 460 ALVKITSVGRWSVFGEVI 477
VKIT WS+ GE++
Sbjct: 484 VKVKITQAKTWSLDGEMV 501
>gi|383786187|ref|YP_005470756.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
gi|383109034|gb|AFG34637.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
Length = 430
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 136/435 (31%), Positives = 227/435 (52%), Gaps = 23/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GC N++D+E L G+ + D+ +EADI ++NTC V+ S+ + + I K
Sbjct: 3 VHIYTYGCQMNENDTEIAKQLLLDGGFEVVDSEDEADIVILNTCAVRKKSEDKVYSHIGK 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ K + + GCV ++ GVS ++G + I +V E V G + ++ L
Sbjct: 63 LRKKGKRIGIMGCVADKEKENLFKRGVSFVIGTRAIAKVPEAVLNAKNGAK-QIYLDDTL 121
Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+D KV R +K + I GC CTYC + RG S +ES++ VRT++ G
Sbjct: 122 DEIDYHKVETRSSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRPMESVLLEVRTLVEKG 181
Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKE 294
KE ++ AYG+D+ G +L LL A++ DG L + P F LE +
Sbjct: 182 YKEFTFLGQNVDAYGKDLNDGTSLAKLLRE-TAQI--DGVKRLWFLTSYPTDFSLEIPQA 238
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E +P + +H+PVQ GSD +L AMNR YT ++ +++ + +VP I++DII
Sbjct: 239 MVE---NPKIAKSIHLPVQHGSDKILRAMNRRYTREEYIDLINNIRNIVPDASISSDIIV 295
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRELTS 412
GFPGETDEDF TV L+K+ KF +++++ + PR GT A + K VP +R L +
Sbjct: 296 GFPGETDEDFEATVKLVKDIKFERLNLAIYSPREGTVAWKHFKDDVPYKTKVRRMSYLLN 355
Query: 413 VFEAFTPYLG---MEGRVERIWITEIAADGIHLGY----VQVLVPSTGNMLGTSALVKIT 465
+ + L + RVE I + A +G+ G + + ++G + +VK+T
Sbjct: 356 LQKMINRELNESYKDKRVEVI-VEAQAKNGLFYGRDIRNKIISFEGSHELIGKTVVVKVT 414
Query: 466 SVGRWSVFGEVIKIL 480
+ ++G V ++L
Sbjct: 415 KITAGPLYGTVEEVL 429
>gi|229031402|ref|ZP_04187403.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
gi|228729897|gb|EEL80876.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
Length = 509
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 225/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ET+E F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETNEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|229051301|ref|ZP_04194819.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
gi|229111783|ref|ZP_04241330.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
gi|229148157|ref|ZP_04276463.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
gi|228635297|gb|EEK91821.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
gi|228671657|gb|EEL26954.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
gi|228722059|gb|EEL73486.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
Length = 450
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 224/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E++PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEVLPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|452913965|ref|ZP_21962592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
gi|6226482|sp|O31778.1|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2634073|emb|CAB13574.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
subtilis subsp. subtilis str. 168]
gi|407959107|dbj|BAM52347.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Synechocystis
sp. PCC 6803]
gi|407964684|dbj|BAM57923.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Bacillus
subtilis BEST7003]
gi|452116385|gb|EME06780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
Length = 509
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 221/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + I GY + LV G +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|452974392|gb|EME74212.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
sonorensis L12]
Length = 509
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 221/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NTC ++ +++ + I
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKMNNPDVILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRHGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELHKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+Y + +V + + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYLELVGKIKKAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ET+E F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMRDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + EG+V + + + + I GY + LV G +G
Sbjct: 425 QRLNDLVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNFKGPKEAIGQL 484
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 485 VNVKIHQAKTWSLDGEMV 502
>gi|452991330|emb|CCQ97390.1| Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium ultunense Esp]
Length = 432
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/430 (30%), Positives = 214/430 (49%), Gaps = 50/430 (11%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY + D+ ++ADI++INTCTV + I + K A
Sbjct: 8 TLGCKVNQYETEAMEELFEKRGYEIVDSDKDADIYVINTCTVTNLGDRKSRQFIRRAKKA 67
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE------------TLKG 168
++A GC Q +++ +EGV IV G + +V++ EE ++KG
Sbjct: 68 NANSIIAAVGCYSQVAPEEVEAIEGVDIVIGTTDRNSIVDLCEEAKNKNKKINIVKSIKG 127
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
H K+ L++ ++ +K + I GC C+YC +ARG + S +E ++
Sbjct: 128 H-------KEFENLNIADLK-SKTRAYIKIQEGCNQFCSYCIIPYARGPIRSRDLEGIIN 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
+ + G KEV L+ +YG+D + L ++ E+ DG +R+ P F
Sbjct: 180 ESKRLAKAGFKEVILTGIHVTSYGKDFQ---DLTLVDVIEEISKIDGIERIRLSSIEPRF 236
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ E + A + C H+ +QSGS+ VL MNR+YT S ++ +V+ + E +P
Sbjct: 237 VNEKFMQRAVNSKKLC--DHFHLSLQSGSNTVLKRMNRKYTTSQYKDIVNLIREYMPDAG 294
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
I TDII GFPGET E+F +T N +K+ F ++H+ ++ PR GTPA+R K ++ + ++R
Sbjct: 295 ITTDIIVGFPGETAEEFEETYNYVKDIHFSRIHVFKYSPRKGTPASRFKDQIHGNIKQER 354
Query: 407 SRELT----SVFEAFT--------PYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGN 454
S +L + E+F P L EG E+ W+ +G Y+++ +
Sbjct: 355 SEKLILLGEELMESFNKKYIDKTLPVLFEEG--EKGWM-----EGYTTNYIRIKAQAGDE 407
Query: 455 MLGTSALVKI 464
+ G VKI
Sbjct: 408 IRGKILPVKI 417
>gi|423452386|ref|ZP_17429239.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X1-1]
gi|401140024|gb|EJQ47581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X1-1]
Length = 450
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 221/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + G EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|448356310|ref|ZP_21545043.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
gi|445653343|gb|ELZ06214.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
Length = 417
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 212/400 (53%), Gaps = 30/400 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEDICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y+FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ET+ D Q++ L++E + +V++++F RPGT AA MK + V K RS+E+++
Sbjct: 288 TETEHDHEQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGQVKKDRSKEMSAAKRDI 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIH---LGYVQVLV 449
V EA+ +G E R + + E AD + Y Q++V
Sbjct: 348 VGEAYGDMVG-EIREGVLVVEEGTADSVKCRDAAYRQIIV 386
>gi|402775944|ref|YP_006629888.1| tRNA modification protein [Bacillus subtilis QB928]
gi|418033152|ref|ZP_12671629.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351469300|gb|EHA29476.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481125|gb|AFQ57634.1| Enzyme for ms(2)i(6)A formation for tRNAmodification [Bacillus
subtilis QB928]
Length = 520
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 221/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 375
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 376 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 435
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + I GY + LV G +G
Sbjct: 436 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 495
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 496 VRVKIQQAKTWSLDGEMV 513
>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
Length = 508
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/438 (29%), Positives = 221/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERL 423
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ----VLVPSTGNMLGTS 459
+ L ++ + EG+ + + + + I GY V + +G
Sbjct: 424 QRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNI 483
Query: 460 ALVKITSVGRWSVFGEVI 477
VKIT WS+ GE++
Sbjct: 484 VKVKITQAKTWSLDGEMV 501
>gi|402564224|ref|YP_006606948.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-771]
gi|401792876|gb|AFQ18915.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-771]
Length = 450
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINVV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|229086881|ref|ZP_04219040.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
gi|228696391|gb|EEL49217.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
Length = 450
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVS--GLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++V+ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|433592660|ref|YP_007282156.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|448335096|ref|ZP_21524248.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|433307440|gb|AGB33252.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|445618032|gb|ELY71616.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
Length = 417
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 219/429 (51%), Gaps = 33/429 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VV+ E + ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVEAFDERLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--- 414
ETD D Q++ L++E + ++++++F RPGT AA +K + + K+RS+E++ V
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKREI 347
Query: 415 --EAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
EA+ +G E R + + + + AD + Y Q++V + G G ++IT+
Sbjct: 348 VGEAYADMVG-EVREDCLVVEDGTADSVKCRDSAYRQIIVQNADDYGIAPGDFVDLEITA 406
Query: 467 VGRWSVFGE 475
FGE
Sbjct: 407 HETMYAFGE 415
>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
gi|229890686|sp|A4IMH7.2|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
Length = 523
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 220/437 (50%), Gaps = 24/437 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M VP V K+R
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERL 438
Query: 408 RELTSVFE--AFTPYLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + A EG+V + + + + GY + LV G +++G
Sbjct: 439 QRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQL 498
Query: 460 ALVKITSVGRWSVFGEV 476
V+IT W++ GE+
Sbjct: 499 VNVRITQAKTWTLTGEL 515
>gi|228941477|ref|ZP_04104027.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974407|ref|ZP_04134975.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981002|ref|ZP_04141304.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
gi|384188384|ref|YP_005574280.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676699|ref|YP_006929070.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
gi|452200776|ref|YP_007480857.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228778662|gb|EEM26927.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
gi|228785243|gb|EEM33254.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818127|gb|EEM64202.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942093|gb|AEA17989.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175828|gb|AFV20133.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
gi|452106169|gb|AGG03109.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 450
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 215/431 (49%), Gaps = 28/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVG 468
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|347753703|ref|YP_004861268.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347586221|gb|AEP02488.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 515
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 222/440 (50%), Gaps = 24/440 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY T+ E+AD+ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K KP + V GC+ Q ++ L++ V +V G I R+ +++E K
Sbjct: 131 LKPLKTEKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPHILKEAYMSKA 190
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D +L L ++ +L +R ++P
Sbjct: 251 EVRELAAKGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT + +V + +P + +
Sbjct: 310 DDRLIEV--LAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIKAAIPDVAL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+TDII GFP ET+E F +T++L KE F + + PR GTPAARMK +P V K+R
Sbjct: 368 STDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNIPMEVKKERL 427
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + A++ EG+V + + + + I GY + LV G + +G
Sbjct: 428 QRLNELVNAYSKAAMEKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAIGKL 487
Query: 460 ALVKITSVGRWSVFGEVIKI 479
VKIT WS+ GE++ +
Sbjct: 488 VQVKITKAKTWSLDGEMVAV 507
>gi|206900889|ref|YP_002250798.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
thermophilum H-6-12]
gi|229890516|sp|B5YE40.1|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
H-6-12]
Length = 440
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 228/443 (51%), Gaps = 37/443 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+SDSE +AG L GY ++ EEADI L+NTC+V+ ++ + + +
Sbjct: 5 YIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFGKLGEL 64
Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ KK + + GC+ Q ++ +++ V V G + + +++E +L G + ++
Sbjct: 65 RKLKKRNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKILE-SLDGKK-KV 122
Query: 174 LHRKKLPA---LDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + +P+ +D ++R NKF +PI GC CTYC + RG S E ++
Sbjct: 123 VLAEDIPSPQDVDFRVIKRENKFQAWIPIIYGCNNFCTYCIVPYLRGREKSRDPEEIIRE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
V + + GV EV L ++ +YG+D+G N +A+L + + RI F+
Sbjct: 183 VEYLASQGVVEVTLLGQNVDSYGKDLG-------NVDLADLLVEIHRIPRIKRIR--FLT 233
Query: 290 EHLKEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
H +++++ V HP V H+P+Q+GSD +L M R YT S+++ +++ + +P
Sbjct: 234 SHPRDVSDKLIRVVATHPKVCPHWHLPLQAGSDRILRRMGRGYTYSEYKALIEKIRAEIP 293
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVV 403
+TDII GFPGE +EDF T ++E KF V+++ + RPGTPAA + +P
Sbjct: 294 KASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGTPAANYEDLIPYETK 353
Query: 404 KKRSRELTSVFEA--FTPYLGMEGRVERIWITEI------AADGIHLGYVQVLVPSTGNM 455
K+ EL ++ + L G+ E + E+ G Y V + +
Sbjct: 354 KRWFDELENLQRKIIYEKNLSRVGKEEIVLAEEVNPKNPRELSGRTENYRLVFFEAEKEL 413
Query: 456 LGTSALVKITSVGRWSVFGEVIK 478
+G LVKIT WS+ GEVI+
Sbjct: 414 IGKFLLVKITEARLWSLKGEVIR 436
>gi|312143592|ref|YP_003995038.1| MiaB family RNA modification protein [Halanaerobium
hydrogeniformans]
gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium
hydrogeniformans]
Length = 442
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 219/441 (49%), Gaps = 36/441 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N+ DSE +AG L GY T+ E ADI L+NTCT++ ++ + + + K
Sbjct: 11 TYGCQMNEHDSEKLAGMLENIGYNNTNKLENADIVLLNTCTIRENAELKVFGKLGQLKEY 70
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
K+ + + GC+ Q ++E+ I G I +V E++++ K E V
Sbjct: 71 KRKNPDLIIGIGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKKIEKNRERVVE 130
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +++ DLP R ++ + I GC CTYC + RG S +E+++
Sbjct: 131 VWDQEEGLIPDLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRERSRPLEAIIKEAEK 190
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A+GVKEV L ++ +YG D+ ++ P+LL + D +R ++P E
Sbjct: 191 LAAEGVKEVTLLGQNVNSYGNDLAEEIDFPLLLEELNK---VDSLARIRFMTSHPRDFSE 247
Query: 291 HL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
L K + +V +H +H+P+QSGS+ +L MNR Y+ + V + +P
Sbjct: 248 KLLLAIKNLEKVAKH------IHLPIQSGSNKILKEMNRGYSREYYIDTVKEIQNKMPEA 301
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKK 405
I+TD I GFPGE+DEDF QT+ L+KE +F + + PR GTPAA R ++ V K+
Sbjct: 302 AISTDFIVGFPGESDEDFEQTLKLVKELRFDMAYTFIYSPRSGTPAAKREDQIAEEVKKE 361
Query: 406 RSRELTSVFE--AFTPYLGMEGRVERIWIT------EIAADGIHLGYVQVLVPSTGNMLG 457
R +L + ++ + G++++I +T E +G + +++G
Sbjct: 362 RLNKLMDIQNRISYQKNQKLIGKIQKILVTGPSNRDENVYEGRTGTNKICFINKRPDLIG 421
Query: 458 TSALVKITSVGRWSVFGEVIK 478
VKI S W++ G V++
Sbjct: 422 KIVKVKIDSAKSWTLQGTVVE 442
>gi|383830897|ref|ZP_09985986.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora xinjiangensis XJ-54]
gi|383463550|gb|EID55640.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora xinjiangensis XJ-54]
Length = 502
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 192/372 (51%), Gaps = 24/372 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GYAL + E+ DI ++NTC V+ + + +
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALATDGEDPDIVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK KP + V GC+ Q R ++ V +V G I + ++E
Sbjct: 62 LGHLRAAKSAKPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNISSLPVLLERARHNA 121
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILESLQTFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 285
V ++A+GV EV L ++ +YG + G L A L GS + R+ T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRL-----AFGKLLRSCGSVEGLERVRFTSP 236
Query: 286 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
F + + +AE V LH+P+QSGSD VL AM R Y S F +++D + +
Sbjct: 237 HPAAFTDDVIDAMAETSN---VCHQLHMPLQSGSDRVLKAMRRSYRSSRFLSILDRVRDA 293
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
+P I TDII GFPGETDEDF QT++++++ +F Q+ PRPGTPAA M +VP
Sbjct: 294 MPDAAITTDIIVGFPGETDEDFEQTLDVVRQARFSSAFTFQYSPRPGTPAAEMDGQVPKE 353
Query: 402 VVKKRSRELTSV 413
VV++R L +
Sbjct: 354 VVQERYDRLVEL 365
>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
thermodenitrificans NG80-2]
gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
thermodenitrificans NG80-2]
Length = 580
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 220/437 (50%), Gaps = 24/437 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 139 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 198
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 199 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 258
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 259 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 318
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 319 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 377
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 378 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 435
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M VP V K+R
Sbjct: 436 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERL 495
Query: 408 RELTSVFE--AFTPYLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + A EG+V + + + + GY + LV G +++G
Sbjct: 496 QRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQL 555
Query: 460 ALVKITSVGRWSVFGEV 476
V+IT W++ GE+
Sbjct: 556 VNVRITQAKTWTLTGEL 572
>gi|237735920|ref|ZP_04566401.1| 2-methylthioadenine synthetase [Mollicutes bacterium D7]
gi|229381665|gb|EEO31756.1| 2-methylthioadenine synthetase [Coprobacillus sp. D7]
Length = 428
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 215/421 (51%), Gaps = 21/421 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +S M + GY D + AD+++INTCTV + S +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQKLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVK 463
L + + ++ + + + DG +L Y++V V + N++G +K
Sbjct: 356 RLLQLSKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIK 415
Query: 464 I 464
I
Sbjct: 416 I 416
>gi|423470532|ref|ZP_17447276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-2]
gi|402436198|gb|EJV68230.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-2]
Length = 450
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 221/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + G EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
+KIT G + +++L
Sbjct: 417 KLVKIKITKAGYPYNEAQFVRVL 439
>gi|423669894|ref|ZP_17644923.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM034]
gi|423673900|ref|ZP_17648839.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM062]
gi|401299021|gb|EJS04621.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM034]
gi|401310266|gb|EJS15591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM062]
Length = 450
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 221/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNERV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|33862596|ref|NP_894156.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9313]
gi|81577894|sp|Q7V8L8.1|MIAB_PROMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|33634512|emb|CAE20498.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 480
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 210/412 (50%), Gaps = 28/412 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++TFGC N++DSE MAG L A GY EAD+ L NTCT++ ++ + + +
Sbjct: 30 SFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLG 89
Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 90 RQARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNGQQV 149
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ DL RR+ + +NV GC CTYC RG S + E++
Sbjct: 150 VATDDNHILE-DLTTARRDSTI-CAWVNVIYGCNERCTYCVVPSVRGKEQSRSPEAIRLE 207
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + A G +E+ L ++ AYGRD+ G L + + +G +R +
Sbjct: 208 IEGLAARGFREITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHIHDVEGIERIRFATS 267
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L E L P V H+P QSG + VL AM R YT+ +R +V+ + EL+
Sbjct: 268 HPRYFTERLIEACFDL--PKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVNRIRELM 325
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAV 402
P I+TD+I FPGETD F T+NL++E F QV+ + + PRP TPAA ++P AV
Sbjct: 326 PDAAISTDVIVAFPGETDAQFQNTLNLLEEVGFDQVNTAAYSPRPNTPAATWSNQLPEAV 385
Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST 452
+R ++L ++ E A G+VE ++ A+GI+ Q L+ T
Sbjct: 386 KVERLKQLNALVERIALQRNSRYSGKVE-----QVLAEGINPKKPQQLMGRT 432
>gi|30022389|ref|NP_834020.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
gi|218232497|ref|YP_002369119.1| hypothetical protein BCB4264_A4429 [Bacillus cereus B4264]
gi|218899478|ref|YP_002447889.1| MiaB family RNA modification protein [Bacillus cereus G9842]
gi|228902835|ref|ZP_04066979.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
4222]
gi|228954596|ref|ZP_04116620.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229071815|ref|ZP_04205029.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
gi|229081572|ref|ZP_04214069.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
gi|229129590|ref|ZP_04258559.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
gi|229152512|ref|ZP_04280703.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
gi|423358653|ref|ZP_17336156.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD022]
gi|423385812|ref|ZP_17363068.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-2]
gi|423426443|ref|ZP_17403474.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-2]
gi|423437756|ref|ZP_17414737.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X12-1]
gi|423503004|ref|ZP_17479596.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HD73]
gi|423527831|ref|ZP_17504276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB1-1]
gi|423561222|ref|ZP_17537498.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A1]
gi|434377478|ref|YP_006612122.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-789]
gi|449091273|ref|YP_007423714.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|29897947|gb|AAP11221.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
gi|218160454|gb|ACK60446.1| conserved hypothetical protein [Bacillus cereus B4264]
gi|218544457|gb|ACK96851.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
gi|228630943|gb|EEK87581.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
gi|228653858|gb|EEL09727.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
gi|228701728|gb|EEL54217.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
gi|228711294|gb|EEL63255.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
gi|228805042|gb|EEM51637.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228856791|gb|EEN01307.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
4222]
gi|401084525|gb|EJP92771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD022]
gi|401111190|gb|EJQ19089.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-2]
gi|401120911|gb|EJQ28707.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X12-1]
gi|401201479|gb|EJR08344.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A1]
gi|401635868|gb|EJS53623.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-2]
gi|401876035|gb|AFQ28202.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-789]
gi|402451494|gb|EJV83313.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB1-1]
gi|402459225|gb|EJV90962.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HD73]
gi|449025030|gb|AGE80193.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
HD73]
Length = 450
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|374626085|ref|ZP_09698499.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
gi|373914611|gb|EHQ46426.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
Length = 428
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 215/421 (51%), Gaps = 21/421 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +S M + GY D + AD+++INTCTV + S +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQRLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKGQVNDQIKHERAN 355
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVK 463
L + + ++ + + + DG +L Y++V V + N++G +K
Sbjct: 356 RLLQLSKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIK 415
Query: 464 I 464
I
Sbjct: 416 I 416
>gi|429727800|ref|ZP_19262556.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
4330]
gi|429151534|gb|EKX94398.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
4330]
Length = 442
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 216/436 (49%), Gaps = 39/436 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
T GC NQ ++E M GY + E AD+++INTCTV S I K K
Sbjct: 8 TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K + V GC Q S ++ E+E V++V G +V+ +EE L KL
Sbjct: 68 NPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNSKLS 119
Query: 181 ALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+D + KVR + +EI + I GC CTYC +ARG + S ++ +
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDDIREE 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ T+ +G KEV L+ +YG+D+ ++ IL + I A DG +R+ P
Sbjct: 180 ITTLAKNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPVLFT 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ I E+ + + H+ +QSG+D+ L MNR YT ++++ VDTL + + + +
Sbjct: 239 DEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDVMLT 296
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TD+I GFPGET+EDF++T+ +KE K +H+ ++ PR GTPAA MK +V + RS
Sbjct: 297 TDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQFRSD 356
Query: 409 ELTSV----FEAFT-PYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTS 459
L ++ F+ T Y+ GR + E+ +G + G Y+++ V S ++ G
Sbjct: 357 ALLNLSKKNFKENTEKYI---GRPLNVLFEEVDKEGYYEGLSDNYIRIKVKSDKDIRGQI 413
Query: 460 ALVKITSVGRWSVFGE 475
KI + GE
Sbjct: 414 LEAKIVDIRDDYCIGE 429
>gi|403069111|ref|ZP_10910443.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
sp. Ndiop]
Length = 518
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 142/439 (32%), Positives = 223/439 (50%), Gaps = 36/439 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG L+ GY T N+E+ADI L+NTC ++ +++ + I K
Sbjct: 79 IRTYGCQMNEHDTEVMAGILTEMGYESTSNTEDADIILLNTCAIRENAENKVFGEIGHLK 138
Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K KP + V GC+ Q R LK+ + + ++ G I R+ ++++E L G E
Sbjct: 139 PLKLEKPDLIIGVCGCMSQEESVVDRILKKHQHIDLIFGTHNIHRLPQLIKEALFGKEMI 198
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPKVR+ K + I GC CTYC RG S E ++ V
Sbjct: 199 VEVWSKEGDVIENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPEDIIQEV 258
Query: 231 RTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAIVA-ELPPDGSTMLRIGMTNPP 286
R ++A G +EV L ++ AYG+D I L L+N I ++P +R ++P
Sbjct: 259 RHLVAQGYQEVTLLGQNVNAYGKDFEDIQYGLGDLMNDIHKIDIP-----RVRFTTSHPR 313
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L E+ + + + +H+PVQSGS +L MNR+Y+ D+ +V + + +P
Sbjct: 314 DFDDRLIEV--LAQGGNLLDHIHLPVQSGSTEILKKMNRKYSREDYLELVRKIRKAIPNA 371
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKK 405
+ TDII GFP ET+E F +T+ L++E F + + PR GTPAAR VP V K+
Sbjct: 372 TLTTDIIVGFPNETEEQFEETMTLMEEVGFEAAYTYIYSPREGTPAARKTDDVPEDVKKQ 431
Query: 406 RSRELTSVF-----EAFTPYLGMEGRVERIWITEIAAD-GIHLGYVQ--VLVPSTG--NM 455
R L + E+ Y G +V + E D + GY + LV G +
Sbjct: 432 RLYRLNELVNKQSAESMKKYDGQTVKV--LVEGESKKDPDVLAGYTEKNKLVNFKGPKSS 489
Query: 456 LGTSALVKITSVGRWSVFG 474
+G V+IT WS+ G
Sbjct: 490 IGNIVEVEITEAKTWSLNG 508
>gi|365830337|ref|ZP_09371918.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
gi|365263441|gb|EHM93274.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
Length = 428
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 215/421 (51%), Gaps = 21/421 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +S M + GY D + AD+++INTCTV + S +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQRLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVK 463
L + + ++ + + + DG +L Y++V V + N++G +K
Sbjct: 356 RLLQLSKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIK 415
Query: 464 I 464
I
Sbjct: 416 I 416
>gi|228993053|ref|ZP_04152976.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
12442]
gi|228999103|ref|ZP_04158685.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
gi|229006651|ref|ZP_04164285.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
gi|228754512|gb|EEM03923.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
gi|228760720|gb|EEM09684.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
gi|228766701|gb|EEM15341.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
12442]
Length = 450
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 220/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL LL + AE+ +G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKNYNLAGLLRDMEAEV--NGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM ++P V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMDDQIPEEVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++V+ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|448363530|ref|ZP_21552130.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
gi|445646343|gb|ELY99332.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
Length = 417
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 218/428 (50%), Gaps = 27/428 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L + GC+ L + E + V + V E + E P
Sbjct: 65 SEETADLFITGCMA-----LAQGEEFAQADVDGQVLHWDAVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-R 300
++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+
Sbjct: 173 RITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADAFAE 230
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP ET
Sbjct: 231 YDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFGEALEYWTLSTDFIVGFPTET 290
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFE 415
D D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E+++ V +
Sbjct: 291 DHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIVAD 350
Query: 416 AFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITSVGR 469
A+ +G E R + + + E AD + Y Q++V + G G V +T+
Sbjct: 351 AYADMVG-ERREDVLVVEEGTADSVKCRDSAYRQIIVQNASEHGIEPGDFIDVDVTAHET 409
Query: 470 WSVFGEVI 477
FGE +
Sbjct: 410 MYAFGEPV 417
>gi|423521831|ref|ZP_17498304.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA4-10]
gi|401176493|gb|EJQ83688.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA4-10]
Length = 450
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 221/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAKV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + G EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, isopentenyl-adenosine A37 tRNA
methylthiolase [Methylobacterium extorquens AM1]
gi|418061495|ref|ZP_12699351.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens AM1]
gi|373564962|gb|EHP91035.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
Length = 446
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 216/444 (48%), Gaps = 35/444 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDGILHAMNRRHTGDAYRRLIERIRNARP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWIT-------EIAADGIHLGYVQVLVPSTGN 454
+R L + + G + I + ++A HL VQ P++
Sbjct: 359 TERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS-- 416
Query: 455 MLGTSALVKITSVGRWSVFGEVIK 478
+GT V+IT G S+FGE ++
Sbjct: 417 TIGTVVPVRITRAGSNSLFGETLE 440
>gi|421076049|ref|ZP_15537051.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
gi|392525908|gb|EIW49032.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
Length = 458
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 199/392 (50%), Gaps = 31/392 (7%)
Query: 45 LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
+SK + +IP E T Y T+GC N DSE +AGQL + GY T++ E+
Sbjct: 1 MSKPDQYNVEIPSNEMKDSNIKYFTTY--TYGCQMNHHDSERLAGQLKSIGYEYTESLED 58
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVS 148
A LINTC V+ ++ + I + K+ K + +AGC+ Q ++ K+ +
Sbjct: 59 ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118
Query: 149 -IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
I+G + ++VE+V+E K + + + + A D+P +RR K +PI GC
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 263
CTYC + RG S + ++ + + DG KE+ L ++ +YG D + LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIYQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238
Query: 264 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
A+ T+ R+ MT+ P + K I +L + H+PVQSGSD +L
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVIDTILNSKKICDHFHLPVQSGSDTILKM 292
Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
MNR YT +R +V + + +P + TDII GFPGETDE F +T+ +KE +F +
Sbjct: 293 MNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGETDELFQETLEFLKEIRFDASYTF 352
Query: 383 QFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
+ R GTPAA M +VP V K+R ++L V
Sbjct: 353 LYSKRSGTPAATMADQVPLVVKKERLQKLMDV 384
>gi|118479478|ref|YP_896629.1| 2-methylthioadenine synthetase [Bacillus thuringiensis str. Al
Hakam]
gi|229186550|ref|ZP_04313711.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
gi|376268207|ref|YP_005120919.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Bacillus cereus F837/76]
gi|118418703|gb|ABK87122.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|228596809|gb|EEK54468.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
gi|364514007|gb|AEW57406.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Bacillus cereus F837/76]
Length = 450
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 218/431 (50%), Gaps = 28/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVG 468
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|443632630|ref|ZP_21116809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443347453|gb|ELS61511.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 509
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 221/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + I GY + LV G +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|381162577|ref|ZP_09871807.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora azurea NA-128]
gi|379254482|gb|EHY88408.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora azurea NA-128]
Length = 496
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 192/370 (51%), Gaps = 20/370 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GYA + E+ D+ ++NTC V+ + + +
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYAHAADGEDPDVVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK KP + V GC+ Q R ++ V +V G I + ++E
Sbjct: 62 LGHLRAAKTAKPGMQIAVGGCLAQKDRGEIVQRAPWVDVVFGTHNISSLPVLLERARHNA 121
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 285
V ++A+GV EV L ++ +YG + G LL A + DG +R +P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRYAFGKLLRACGS---VDGLERVRFTSPHP 238
Query: 286 P-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
F + + +AE P V LH+P+QSGSD VL AM R Y + F +++D + E +P
Sbjct: 239 AAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLSILDRVREAMP 295
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
I TDII GFPGET+EDF QT+ ++++ +F Q+ PRPGTPAA M+ +VP AVV
Sbjct: 296 DAAITTDIIVGFPGETEEDFEQTLEVVRQARFSSAFTFQYSPRPGTPAAEMEDQVPKAVV 355
Query: 404 KKRSRELTSV 413
++R L +
Sbjct: 356 QERYDRLVEL 365
>gi|374708575|ref|ZP_09713009.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sporolactobacillus inulinus CASD]
Length = 494
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 218/437 (49%), Gaps = 29/437 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG L GY TD+ + AD+ LINTC ++ +++ + I K
Sbjct: 54 IETYGCQMNEHDTEVMAGILEKMGYHETDDPKLADVILINTCAIRENAENKVFGHIGTLK 113
Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
+ K KP L V GC+ Q ++ L + V ++ G I R+ ++++E L E
Sbjct: 114 TLKLEKPGLILGVCGCMAQEEVVVNKILAKHPQVDLIFGTHNIHRLPQLLKEALFSKEMV 173
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LP+ RR F + I GC CTYC + RG S E +V V
Sbjct: 174 VEVWSKEGDIVENLPQSRRGHFQAWVNIMYGCDKFCTYCIVPYTRGKERSRHPEEIVQEV 233
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + G KE+ L ++ AYG+D+ L ++ E+ G +R ++P +
Sbjct: 234 RELARQGYKEITLLGQNVNAYGKDLPDLENYGLGNLMDEIRQIGIPRVRFTTSHPKDFDD 293
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
HL E+ + C + +H+PVQSGS +L M R YT + + + + VP T
Sbjct: 294 HLIEVLAKGGNLCEH--IHLPVQSGSSDILKIMGRGYTRERYLELFHKIKDAVPNASFTT 351
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII GFP ETDE F +T++L++E +F + PR GTPAARMK +P V K+R +
Sbjct: 352 DIIVGFPNETDEQFEETLSLVRECEFDGGFTFIYSPRAGTPAARMKDNIPMDVKKERLQR 411
Query: 410 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST-----------GNMLGT 458
L + + F+ + + + + E+ +G +VL T +++G
Sbjct: 412 LNKLMDEFSAKSNAKYQDQTV---EVLVEGESRKNPEVLSGHTRTNKVVNFRGPKSLIGE 468
Query: 459 SALVKITSVGRWSVFGE 475
VKIT+ WS+ GE
Sbjct: 469 LVKVKITNAKMWSLNGE 485
>gi|229062008|ref|ZP_04199334.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
gi|228717317|gb|EEL68990.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
Length = 450
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 220/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASKFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|423512424|ref|ZP_17488955.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-1]
gi|402449395|gb|EJV81232.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-1]
Length = 450
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 220/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDRKGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|410456328|ref|ZP_11310191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
gi|409928242|gb|EKN65360.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
Length = 514
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 228/453 (50%), Gaps = 36/453 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD +E+A++ L+NTC ++ +++ + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFLALGYEPTDRTEDANVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K KP + V GC+ Q ++ LK + V ++ G I R+ ++ E E
Sbjct: 131 LKALKLEKPDLLIGVCGCMSQEESVVNKILKTYQQVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR K + I GC CTYC RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGKIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEEIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + A G +EV L ++ AYG+D+ GVN L ++ +L +R ++P
Sbjct: 251 EVRQLAAQGYQEVTLLGQNVNAYGKDLEGVNYG--LGELMDDLRKIDIPRIRFTTSHPRD 308
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + +P +
Sbjct: 309 FDDRLIEV--LAKGGNLMDHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIKAAIPNVA 366
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ETDE F +T++L +E + + + PR GTPAA+M+ VP V K R
Sbjct: 367 LTTDIIVGYPNETDEQFEETMSLYREVGYELAYTFIYSPREGTPAAKMEDNVPMEVKKAR 426
Query: 407 SRELTSV-----FEAFTPYLGMEGRVERIWITEIAADG--IHLGY------VQVLVPSTG 453
+ L ++ EA + EG++ + + + + + GY V P +
Sbjct: 427 LQRLNALVNELSLEAMKKH---EGQILDVLVEGESKNNPDVLAGYTSRNKLVNFAAPKSS 483
Query: 454 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDK 486
+G VKIT WS+ GE+++ L V+ K
Sbjct: 484 --IGKIVKVKITEARTWSLNGEMVEELEPVEVK 514
>gi|163942066|ref|YP_001646950.1| RNA modification protein [Bacillus weihenstephanensis KBAB4]
gi|229013530|ref|ZP_04170664.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
gi|229169058|ref|ZP_04296774.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
gi|423368361|ref|ZP_17345793.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD142]
gi|423489494|ref|ZP_17466176.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BtB2-4]
gi|423495217|ref|ZP_17471861.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER057]
gi|423497989|ref|ZP_17474606.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER074]
gi|423519010|ref|ZP_17495491.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-4]
gi|423591694|ref|ZP_17567725.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD048]
gi|423598373|ref|ZP_17574373.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD078]
gi|423660845|ref|ZP_17636014.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM022]
gi|163864263|gb|ABY45322.1| RNA modification enzyme, MiaB family [Bacillus weihenstephanensis
KBAB4]
gi|228614467|gb|EEK71576.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
gi|228747767|gb|EEL97636.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
gi|401080960|gb|EJP89241.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD142]
gi|401151310|gb|EJQ58762.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER057]
gi|401160065|gb|EJQ67444.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-4]
gi|401161276|gb|EJQ68643.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER074]
gi|401231827|gb|EJR38329.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD048]
gi|401236643|gb|EJR43100.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD078]
gi|401300886|gb|EJS06475.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM022]
gi|402431730|gb|EJV63794.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BtB2-4]
Length = 450
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 220/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|448491553|ref|ZP_21608393.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
gi|445692553|gb|ELZ44724.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
Length = 444
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 214/431 (49%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ LVV GC+ ++ V +I EV L G E +
Sbjct: 63 ELSETTAELVVTGCMALAQGEMFAEADVD----AEILHWDEVPTYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHEELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL M R++ + FR VV+T E + ++TD I GFP
Sbjct: 228 FAENEELYDFVHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDERLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
E + D ++++L+ E ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 288 TEDEADHERSMDLLAEVSPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEV 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V EA+ +G E + + E D + Y Q++V G +G V++T
Sbjct: 348 VGEAYESMVGE--TFEVLVVEEGTGDSVKCRDGAYRQIIVQGATDRGVAVGDFLTVEVTG 405
Query: 467 VGRWSVFGEVI 477
FG+ +
Sbjct: 406 HNTVYAFGDPV 416
>gi|228960578|ref|ZP_04122226.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296504804|ref|YP_003666504.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
gi|423585210|ref|ZP_17561297.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD045]
gi|423631033|ref|ZP_17606780.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD154]
gi|423640609|ref|ZP_17616227.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD166]
gi|423650175|ref|ZP_17625745.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD169]
gi|423657266|ref|ZP_17632565.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD200]
gi|228799091|gb|EEM46060.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296325856|gb|ADH08784.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
gi|401233853|gb|EJR40339.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD045]
gi|401264400|gb|EJR70512.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD154]
gi|401279670|gb|EJR85592.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD166]
gi|401282593|gb|EJR88492.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD169]
gi|401290009|gb|EJR95713.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD200]
Length = 450
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 223/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
Length = 438
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 221/449 (49%), Gaps = 42/449 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T++ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYTPTEDVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K+ L V GC+ Q ++ K + IV G I + E++EE +GH
Sbjct: 62 GELMRLKRKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGTFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEVKR 354
Query: 405 KRSRELTSVFEAFTPYLG--MEGRV------------ERIWITEIAADGIHLGYVQVLVP 450
R + L V + L MEG+V E +W + + + VL P
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKM------VLFP 408
Query: 451 STGNM-LGTSALVKITSVGRWSVFGEVIK 478
++ +G + I W +G + K
Sbjct: 409 KDDSLSIGETVPAYIDKAQTWVCYGTIQK 437
>gi|47567875|ref|ZP_00238583.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
gi|49478605|ref|YP_038365.1| hypothetical protein BT9727_4047 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141194|ref|YP_085636.1| hypothetical protein BCZK4057 [Bacillus cereus E33L]
gi|167634590|ref|ZP_02392910.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170687423|ref|ZP_02878640.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|196034518|ref|ZP_03101927.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
gi|196039288|ref|ZP_03106594.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
gi|225866291|ref|YP_002751669.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
gi|228929354|ref|ZP_04092378.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935630|ref|ZP_04098444.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228948023|ref|ZP_04110308.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228987561|ref|ZP_04147679.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229031959|ref|ZP_04187945.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
gi|229123849|ref|ZP_04253042.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
gi|229157924|ref|ZP_04285997.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
gi|254684067|ref|ZP_05147927.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254721901|ref|ZP_05183690.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. A1055]
gi|254741453|ref|ZP_05199140.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Kruger B]
gi|300118700|ref|ZP_07056428.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
gi|421638385|ref|ZP_16078981.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. BF1]
gi|423400843|ref|ZP_17378016.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-2]
gi|423478452|ref|ZP_17455167.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-1]
gi|47555552|gb|EAL13895.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
gi|49330161|gb|AAT60807.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974663|gb|AAU16213.1| conserved hypothetical protein [Bacillus cereus E33L]
gi|167530042|gb|EDR92777.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170668618|gb|EDT19364.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|195993060|gb|EDX57019.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
gi|196029915|gb|EDX68516.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
gi|225790885|gb|ACO31102.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
gi|228625532|gb|EEK82286.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
gi|228659563|gb|EEL15210.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
gi|228729349|gb|EEL80340.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
gi|228772159|gb|EEM20607.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228811609|gb|EEM57945.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228823990|gb|EEM69808.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830305|gb|EEM75918.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|298723949|gb|EFI64663.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
gi|401653833|gb|EJS71376.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-2]
gi|402428614|gb|EJV60711.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-1]
gi|403394811|gb|EJY92051.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. BF1]
Length = 450
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 223/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
Length = 509
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 225/445 (50%), Gaps = 36/445 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LKPLKQRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKA 187
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIN 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSVFEAFTPYLGME-GRVERIWITEIAADG-------IHLGY------VQVLVPSTG 453
+ L ++ ++ ME + + I E+ DG + GY V + P
Sbjct: 425 QRLNALVNEYS----MEKNKRYKGQIVEVLVDGESKNNPDVLAGYTRTNKLVNFVAPKYA 480
Query: 454 NMLGTSALVKITSVGRWSVFGEVIK 478
+G VK+T WS+ GE+++
Sbjct: 481 --IGQLVKVKVTEAKTWSLNGELVE 503
>gi|428215096|ref|YP_007088240.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
gi|428003477|gb|AFY84320.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
Length = 452
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 146/456 (32%), Positives = 224/456 (49%), Gaps = 58/456 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFQFSEDPNQADLILYNTCSIRDNAEHKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K +P L+VAGCV Q R + EL+ V +G Q +R+ +++E+ G++V
Sbjct: 69 AKRKLQQPNLTLIVAGCVAQQEGEALLRRVPELDMV--MGPQHANRLEDLLEQVFAGNQV 126
Query: 172 ---RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
LH + D+ K RR V +NV GC CTYC RG S T E++
Sbjct: 127 VATEALHIME----DITKPRRESQVTAW-VNVIYGCNERCTYCIVPSVRGIEQSRTPEAI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTML 278
+ + G KEV L ++ AYGRD+ G NL L + + V ++P G +
Sbjct: 182 RAEMEELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERI 239
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R ++P + E L + L P V H+P QSG + +L AM R YT +R ++D
Sbjct: 240 RFATSHPRYFTERLIRACQEL--PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDM 297
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
+ +P I+ D I GFPGET+E F T+ L++E F ++ + + PRPGTPAA +
Sbjct: 298 IRHYMPDASISADAIVGFPGETEEQFENTLKLLEEISFDMLNTAAYSPRPGTPAAVWENQ 357
Query: 399 PSAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST 452
S VK +R L S+ E YL GR+E + + E QV+ +
Sbjct: 358 LSEEVKSDRLQRLNHLVSIKAAERSQRYL---GRIEEVLVEEQNTKDP----TQVMGRTR 410
Query: 453 GNML-----------GTSALVKITSVGRWSVFGEVI 477
GN L G VKIT +S+ GE I
Sbjct: 411 GNRLTFFTGDINQLKGQLVQVKITESRAFSLSGEAI 446
>gi|126700065|ref|YP_001088962.1| MiaB-like tRNA modifying enzyme [Clostridium difficile 630]
gi|254976042|ref|ZP_05272514.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-66c26]
gi|255093430|ref|ZP_05322908.1| putative radical SAM superfamily protein [Clostridium difficile CIP
107932]
gi|255101608|ref|ZP_05330585.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-63q42]
gi|255307477|ref|ZP_05351648.1| putative radical SAM superfamily protein [Clostridium difficile
ATCC 43255]
gi|255315175|ref|ZP_05356758.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-76w55]
gi|255517844|ref|ZP_05385520.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-97b34]
gi|255650960|ref|ZP_05397862.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-37x79]
gi|260684029|ref|YP_003215314.1| radical SAM protein [Clostridium difficile CD196]
gi|260687689|ref|YP_003218823.1| radical SAM protein [Clostridium difficile R20291]
gi|306520839|ref|ZP_07407186.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-32g58]
gi|384361672|ref|YP_006199524.1| radical SAM protein [Clostridium difficile BI1]
gi|423092477|ref|ZP_17080281.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
gi|115251502|emb|CAJ69335.1| putative MiaB-like tRNA modifying enzyme [Clostridium difficile
630]
gi|260210192|emb|CBA64398.1| putative radical SAM superfamily protein [Clostridium difficile
CD196]
gi|260213706|emb|CBE05587.1| putative radical SAM superfamily protein [Clostridium difficile
R20291]
gi|357553979|gb|EHJ35715.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
Length = 432
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 215/433 (49%), Gaps = 34/433 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY ++ E AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
++A GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 68 NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122
Query: 181 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ + +G KEV L+ +YG+D+ LL+ I + +R+ P +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
D+I GFPGET+E+F +T +KE + Q+HI ++ PR GTPAA M+ +V + RS +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358
Query: 410 LTSV----FEAF-TPYLGMEGRVERIWITEIAA---DGIHLGYVQVLVPSTGNMLGTSAL 461
L ++ F F T ++G E V ++ I +G+ Y++V+V S N+ G
Sbjct: 359 LLNLSKVNFNKFATKFIGRELDV--LFEQNIEGNKYEGLTSNYIRVVVESDKNIQGQILK 416
Query: 462 VKITSVGRWSVFG 474
VKI V V G
Sbjct: 417 VKINDVKDEYVEG 429
>gi|423558106|ref|ZP_17534408.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MC67]
gi|401191374|gb|EJQ98396.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MC67]
Length = 450
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 221/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAKV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + G EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|448506321|ref|ZP_21614431.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|448525058|ref|ZP_21619476.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
gi|445699971|gb|ELZ51989.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|445700030|gb|ELZ52045.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
Length = 441
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 218/433 (50%), Gaps = 32/433 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P E + D +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKIT 465
V EA+ +G E + + E D + Y Q++V + G +G V++T
Sbjct: 347 VVGEAYESMVGE--TFEALVVEEGTGDSVKCRDGAYRQIIVQNATDRGVEVGDFLTVEVT 404
Query: 466 SVGRWSVFGEVIK 478
FG+ ++
Sbjct: 405 GQNTVYAFGDPVE 417
>gi|429736625|ref|ZP_19270517.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154646|gb|EKX97368.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
Length = 439
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 222/444 (50%), Gaps = 36/444 (8%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G +M T GC NQ ++E M G A GY + E A++++INTC+V S
Sbjct: 7 GLRAAFM-TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQ 65
Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
LI + + V GC Q +++ LEGV +V G ++ R+V+ VEE L+
Sbjct: 66 LIRRAARTNPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKERARIVDYVEEALRADTGA 125
Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ R+ + +P LP R L I GC CT+C +ARG + S
Sbjct: 126 IGTITDIMQARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 179
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ ++ + G EV L+ GAYG D+ + P L +A L + LR+G
Sbjct: 180 ELSAVAREMKLLTEAGFHEVVLTGIHLGAYGIDLR-DRPTLADACRTALAEEDLRRLRLG 238
Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
+E E+ E++R P + LH+P+Q+GSD VL AMNR Y + F T+++ +
Sbjct: 239 SLES---VELSAELLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFATLLEDVR 295
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
VPG+ I+TDII GFPGET+EDF ++ ++ F ++H+ + PR GTPAAR +V
Sbjct: 296 RAVPGVAISTDIIVGFPGETEEDFAAGLDFVRAMGFARMHVFPYSPRKGTPAARRSDQVL 355
Query: 400 SAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTG 453
V K+R+ + ++ + + G V + E +ADG+ G Y++V +
Sbjct: 356 PMVRKERAARMQALADELAEEYHRAALGSVADVLF-ETSADGVTDGLTETYIRVYTDAPV 414
Query: 454 NMLGTSALVKITSVGRWSVFGEVI 477
G A +++T + R V+GE I
Sbjct: 415 TR-GEIAPLRLTHLYRDGVWGEPI 437
>gi|163781959|ref|ZP_02176959.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159883179|gb|EDP76683.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 441
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 232/440 (52%), Gaps = 26/440 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++KTFGC N +DSE + G L GY ++ EEAD+ L+NTCT++ + + I +
Sbjct: 6 FIKTFGCQMNFNDSERIRGILRTLGYEPAESWEEADLILLNTCTIREKPDQKVLSHIGEY 65
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHE-VR 172
K K+ + V+GC+ Q G +++ V I+ + ++ E++ + G++ V
Sbjct: 66 KKIKERNPNALIAVSGCLAQRAGWELVQKAPAVDIMFSSFNMHQLPELINQAQAGYKAVA 125
Query: 173 LLH---RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L + D P R N + + I GC CTYC RG S ++ S++
Sbjct: 126 ILEAPPEDEDAVWDFPTERDNPYCAYVTIIKGCDKNCTYCVVPKTRGKERSRSMYSILEE 185
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFI 288
V+ ++ +GV+E+ L ++ A+G+D PI + ++ E+ DG +R +P +
Sbjct: 186 VKKLVDEGVREIHLLGQNVTAWGKDF--ERPIPFSELLYEVSKVDGVERIRFTTGHPKDL 243
Query: 289 LEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ E +A++ P V + LH+P Q+GSD +L M+R+YT + ++ L E V +
Sbjct: 244 TDDTVEAMADI---PQVCNALHLPFQAGSDRILELMDRKYTKEFYLDRINRLKEAVEDIA 300
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
++TDII GFP ETDEDF T+++++E +F QV ++ PRPGTPAA M+ +VP V +R
Sbjct: 301 LSTDIIVGFPTETDEDFEHTLDVVREVEFEQVFSFKYSPRPGTPAAEMEGQVPDEVKTER 360
Query: 407 SRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPST----GNMLGTSA 460
L + +A L EG V+++ + E +G +G +T +LG
Sbjct: 361 MSRLLELQKAIMGKLSKRYEGTVQKVLVEEERGEGTLIGRTTTNKWATFKGGRELLGKIV 420
Query: 461 LVKITSVGRWSVFGEVIKIL 480
V++ S +++ E+++++
Sbjct: 421 KVRVESASPFNLECELLEVV 440
>gi|357058521|ref|ZP_09119372.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
gi|355373849|gb|EHG21157.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
Length = 438
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 215/441 (48%), Gaps = 37/441 (8%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G + +M T GC NQ ++E M G GY + E AD+++INTC+V S
Sbjct: 8 GVKAAFM-TLGCKVNQFETETMEGLFRVRGYDIVPFEERADVYVINTCSVTHLSDRKSRQ 66
Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
LI + + V GC Q +++ L+GV +V G ++ R+V+ VE +L+
Sbjct: 67 LIRRAARTNPAACIAVTGCYAQVAPEEIRALDGVRVVIGTKERARIVDYVEASLRADTGA 126
Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ R+ + +P LP R L I GC CT+C +ARG + S
Sbjct: 127 FGTITDIMQARVF--EDIPLHALPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 180
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ +R ++ G EV L+ GAYG D+ P L +A L G LR+G
Sbjct: 181 ELSAVAREMRLLVDAGFHEVVLTGIHLGAYGIDLA-ERPTLADACRTALAERGLRRLRLG 239
Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
+E ++ E++R P + LH+P+Q+GSDAVL AMNR YT + F +V +
Sbjct: 240 SLES---VELSADLLELMRTEPRFAAHLHLPLQAGSDAVLRAMNRHYTTAQFAQLVMEVR 296
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVP 399
VPG+ I+TDII GFPGET+ DF ++ ++ F ++H+ + R GTPAA R +VP
Sbjct: 297 AAVPGVAISTDIIVGFPGETEADFAAGMDFVRRMGFARMHVFPYSARRGTPAARRTDQVP 356
Query: 400 SAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLG----YVQVL--VPS 451
V K+R+ + ++ E + M G V + E DG+ G YV+V P
Sbjct: 357 PMVRKERAARMQALAEELAEGYHRSMLGSVAEVLF-ETQEDGVTDGLTETYVRVYTDAPV 415
Query: 452 TGNMLGTSALVKITSVGRWSV 472
T + L+ I G W +
Sbjct: 416 TRGEIVPVRLMHIYKDGVWGM 436
>gi|222100720|ref|YP_002535288.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
gi|221573110|gb|ACM23922.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
Length = 434
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 221/431 (51%), Gaps = 33/431 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ ++TFGC NQ +SEYMA QL GY + + EA ++IN+C V + + L+
Sbjct: 3 TVRIETFGCKVNQYESEYMAEQLEKAGYTVLP-AGEASYYIINSCVVTQEVEKKVKRLVK 61
Query: 120 --KCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K+ +++ GC Q + K+L ++G+ + +V+ + +L G + ++
Sbjct: 62 SIRRKNRDAKIILTGCFAQLFPEEAKKLPVNMVLGISEKKNIVDHLL-SLNGEQKLVVSA 120
Query: 177 KKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRT 232
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 121 PDSPVYE--KVKGSFEDRTRAYIKVEDGCDNGCTYCAIRFARGTKVRSKPLELFKEEFEK 178
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
++ G KE+ ++ + G YG+DIG L LL IV +P G +R+ N I +
Sbjct: 179 MVIKGYKEIVITGVNLGKYGKDIGTTLVDLLK-IVEHVP--GDYRVRLSSLNVEDITD-- 233
Query: 293 KEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E+ EV R +P + LH+ VQSGSD VL M R Y+ SDF VV+ L + P I TD
Sbjct: 234 -ELVEVFRDNPRLCPHLHISVQSGSDRVLKRMGRRYSSSDFLKVVEKLRSINPDFSITTD 292
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVV 403
II GFPGETDEDF +TV L++E +F +VHI ++ PRPGTPA+ KK ++
Sbjct: 293 IIVGFPGETDEDFLKTVKLLEEVEFSRVHIFRYSPRPGTPASTFSDAVPEHKKKERLNIL 352
Query: 404 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS--TGNMLGTSAL 461
K++++E++ ++ M + R+ A G+ GY + V G+ +G
Sbjct: 353 KEKAKEVSHRYKR-----RMVNKKRRVLAEWYIAKGVLSGYDEYYVKHEFVGDGIGVFHN 407
Query: 462 VKITSVGRWSV 472
V++ S+ V
Sbjct: 408 VRVKSLSEEGV 418
>gi|448731554|ref|ZP_21713853.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
gi|445791882|gb|EMA42501.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
Length = 414
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 223/431 (51%), Gaps = 32/431 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV +++ M
Sbjct: 3 SYHLETYGCTANRGESRTIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLRRAR 62
Query: 120 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ +S LVV GC + QG + +L+ ++ G ++ VV L G E +
Sbjct: 63 ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTVTPG 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD + ILPI GC+ C+YC TKHA G + S VE V + R ++ G
Sbjct: 114 TEPILD-------GVIGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LLN I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRITGQDTGVYGWDDGERKLHELLNRICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
EV + +Y+FLH PVQSGSD VL M R++ + +FR VV T + + +ATD I G
Sbjct: 224 EVFAENEKLYNFLHAPVQSGSDDVLGEMRRQHQVREFREVVKTFDDHLDHWTLATDFITG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP E+D D +++ L++E + ++++++F RPGT AA MK + + K+RS+ ++ +
Sbjct: 284 FPTESDADHEESMELLRETQPERINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSDLKM 343
Query: 416 AF--TPYLGMEGRVERIWITEI----AADGIHLGYVQVLV---PSTGNMLGTSALVKITS 466
Y M G + + E + Y Q+++ P G G V+ITS
Sbjct: 344 DVVGAAYESMVGERHEVLVVEPGTGESVKCYDEAYRQIIIQDAPEHGVAPGDFVEVEITS 403
Query: 467 VGRWSVFGEVI 477
FGE +
Sbjct: 404 QNTVYAFGEPV 414
>gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena
variabilis ATCC 29413]
gi|123758760|sp|Q3M8N9.1|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC
29413]
Length = 454
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 223/456 (48%), Gaps = 46/456 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAVRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEE 361
Query: 403 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-- 456
K +R L +V A M GR+E + + E QV+ + GN L
Sbjct: 362 TKSDRLQRLNHLVNVKAAERSQRYM-GRIEEVLVEEQNPK----DQTQVMGRTRGNRLTF 416
Query: 457 ---------GTSALVKITSVGRWSVFGEVIKILNQV 483
G VKI V +S+ GE I+I V
Sbjct: 417 FKGDINELKGQLVKVKINEVRAFSLTGEPIEIRQAV 452
>gi|414153655|ref|ZP_11409977.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454676|emb|CCO07881.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 435
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 215/441 (48%), Gaps = 29/441 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T IY T GC NQ +S MA GY + D + AD+++INTCTV +
Sbjct: 3 TAAIY--TLGCKVNQYESAAMADLFRRAGYRVVDFEQPADVYIINTCTVTHLGDRKSRQM 60
Query: 118 IAKCKSAKKPLVVA--GCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
I + V+A GC Q S ++ E+ GV+ +VG R+V++VEE G +
Sbjct: 61 IRRAAKQNPAAVIAVTGCYAQTSPGEVLEIPGVNLVVGTADKSRIVQLVEE-YAGRTAPV 119
Query: 174 LHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ A D LP + K L I GC C YC +ARG + S E++V
Sbjct: 120 QAVADVMAKDCFDELPVPTEQGKSRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVVR 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+I G +E+ L+ GAYG+D+ +NL L+ + A LP G T LR+G P
Sbjct: 180 SATQLIQQGYQEIVLTGIHIGAYGQDLADPRINLGWLVERL-ARLP--GLTRLRLGSVEP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
I + L I V HP + LH+P+QSG D +L+ M R YT F ++D + + + G
Sbjct: 237 HDINQQL--ITAVANHPNICRHLHIPLQSGDDQILAGMQRRYTAGQFLELIDHIKQTIAG 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ I +D+I GFPGET+ F T+ + F +H+ ++ PR GTPAA M +VP AV +
Sbjct: 295 VAITSDVIVGFPGETEAHFQNTMQTVSRAAFASIHVFKYSPRKGTPAAAMPDQVPPAVKE 354
Query: 405 KRSRELTSVFEAFTPYLGME--GRVERIWITEIAAD--GIHLG----YVQVLVPSTGNML 456
RS+ L ++ + + G+ + + + G + G Y++V+ P+ ++
Sbjct: 355 DRSKRLIALGQRLAHDFAVRQVGKNLAVLVEQPCEKLTGFYEGHSDNYLKVVFPADESLR 414
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G V I G + G +I
Sbjct: 415 GKIVTVHIEEAGDAWLKGRII 435
>gi|340354922|ref|ZP_08677618.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
gi|339622936|gb|EGQ27447.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
Length = 515
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 223/446 (50%), Gaps = 30/446 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD ++AD+ L+NTC ++ +++ + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMALGYEATDTVKDADVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K +P + V GC+ Q ++ LK + V ++ G I R+ ++ E E
Sbjct: 131 LKPLKLERPDLLIGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPHILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 191 MVIEVWSKEGDVIENLPKVRHGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ +L +R ++P
Sbjct: 251 EVRQLAAEGYKEITLLGQNVNAYGKDFD-DITYRLGDLMDDLRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+YT + +V+ + +P +
Sbjct: 310 DDHLIEV--LAKGGNLVDHIHLPVQSGSSDMLKIMARKYTRESYLELVNKIRTAIPTASL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + R GTPAA+M+ VP V K+R
Sbjct: 368 TTDIIVGFPNETDEQFEETMSLYREVGFDMAFTYIYSAREGTPAAKMQDNVPMEVKKERL 427
Query: 408 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADG--IHLGYVQ----VLVPSTGNML 456
+ L + EA PY +G+V ++ + + + GY + V + +++
Sbjct: 428 QRLNKLVNDMSAEAMKPY---KGQVVKVLVEGESKKNPDVLAGYTEKSKLVNFRAPRSVI 484
Query: 457 GTSALVKITSVGRWSVFGEVIKILNQ 482
G V+I WS+ GE I ++ +
Sbjct: 485 GEIVEVRIKEAKTWSLDGEFIGVVKE 510
>gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus
denitrificans BC]
gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans
K601]
gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus
denitrificans BC]
gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans
K601]
Length = 449
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 222/442 (50%), Gaps = 28/442 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS MA L +A Y TDN EEAD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSAKMADVLGAAQDYQSTDNPEEADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + K K+ V V GCV +G +K V +V G Q + R+ E++ K H+
Sbjct: 62 DLGRVKHLKEKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLSAREKQHK 121
Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMT 283
V + GVKEV L ++ AY +G + +LL VAE+P G +R +
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGTMGDTAEKADFALLLE-YVAEIP--GIERIRYTTS 238
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P L I R P + S LH+PVQ GSD +L AM R YT ++++ V L +
Sbjct: 239 HPNEFTPRL--IEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRKLKAIR 296
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
PGM +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P V
Sbjct: 297 PGMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHDV 356
Query: 403 VKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAAD--GIHLGYVQ----VLVPSTGN 454
+R +EL +V + E G V+R+ + ++ G +G + V P
Sbjct: 357 KLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDAGELMGRTECNRVVNFPGRER 416
Query: 455 MLGTSALVKITSVGRWSVFGEV 476
++G V+IT +++ GEV
Sbjct: 417 LIGQMIDVRITEARTYTLRGEV 438
>gi|257784577|ref|YP_003179794.1| MiaB family RNA modification protein [Atopobium parvulum DSM 20469]
gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
Length = 455
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 192/371 (51%), Gaps = 22/371 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T ++KTFGC N D+E ++G L A G ++++ADI + TC+V+ + +
Sbjct: 10 KTYHIKTFGCQMNLHDTERVSGLLEACGCNEVSDTDDADIVIFMTCSVRENADQRLYGQA 69
Query: 119 AKCKSAKKP------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ SA P + + GC+ Q G + +++ V +V G + + ++ +G
Sbjct: 70 SAMVSAPTPPSGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASLPALLTSAFRGE 129
Query: 170 EVRLL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
R+ K + DLP R ++ +PI GC CTYC + RG S T E+
Sbjct: 130 NDRVAVDISEEGKGFSTDLPSNRAQQYHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
++G ++ADGV+E+ L ++ +YGRD+ LL A+ G +R +
Sbjct: 190 VIGECERLVADGVREITLLGQNVNSYGRDLYGKPRFAELLRAV----GQTGVERIRFTSS 245
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
NP + + + IA + P V LH+ VQSGS VL MNR YT ++ VV L +
Sbjct: 246 NPKDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRVLKKMNRSYTREEYLDVVSRLRAAI 303
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
PG+ ++TDII GFPGET+EDF +T++L+KE + + + RPGTPAA+ + P V
Sbjct: 304 PGLALSTDIIVGFPGETEEDFEETLSLVKEAGYSSAYTFIYSKRPGTPAAKYEDNTPHEV 363
Query: 403 VKKRSRELTSV 413
+++R L +
Sbjct: 364 IQERFDRLAEL 374
>gi|167754793|ref|ZP_02426920.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
gi|167705625|gb|EDS20204.1| tRNA methylthiotransferase YqeV [Clostridium ramosum DSM 1402]
Length = 428
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 214/421 (50%), Gaps = 21/421 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +S M + GY D + AD+++INTCTV + S +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLGTGEMVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQKLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVK 463
L + + ++ + + + DG +L Y++V V + N++G +K
Sbjct: 356 RLLQLSKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIK 415
Query: 464 I 464
I
Sbjct: 416 I 416
>gi|448479235|ref|ZP_21604087.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
gi|445822513|gb|EMA72277.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
Length = 441
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 218/433 (50%), Gaps = 32/433 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P E + D +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKIT 465
V EA+ +G E + + E D + Y Q++V + G +G V++T
Sbjct: 347 VVGEAYESMVGE--TFEALVVEEGTGDSVKCRDGAYRQIIVQNATDRGVEVGDFLTVEVT 404
Query: 466 SVGRWSVFGEVIK 478
FG+ ++
Sbjct: 405 GHNTVYAFGDPVE 417
>gi|438002158|ref|YP_007271901.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Tepidanaerobacter acetatoxydans Re1]
gi|432178952|emb|CCP25925.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Tepidanaerobacter acetatoxydans Re1]
Length = 435
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 212/432 (49%), Gaps = 27/432 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ +S +A GY + D +AD+++INTC V + S +I K
Sbjct: 8 TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRKAIRN 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ + V GC Q + ++ ++GVS+ VG + R+V++VE+ + + ++
Sbjct: 68 NPSAKVAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNIMK 127
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
++ + L K R K L I GC C+YC +ARG + S ++++++ +++
Sbjct: 128 QQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSLAK 186
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
DG KE+ L+ G YGRD LL+ I +G +R+ +E ++
Sbjct: 187 DGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAMELT 240
Query: 296 AEVLRHPC----VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E L+ C + HVP+QSG D VL MNR YT +FR +D + +L+P I TD
Sbjct: 241 DEFLKSLCGIKKICHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASITTD 300
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
+I GFPGET+E+F QT N IKE F ++H+ F PR GT A M ++ +V +RS L
Sbjct: 301 VIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIEKSVKVERSHRL 360
Query: 411 TSVFEAFTPYLGME--GRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKI 464
S+ E ++++ + D + G Y++V V S ++ V++
Sbjct: 361 ISLSEKLEKDFCKRFVNSIQKVLFEDKKDDNFYEGLTENYIKVGVKSKQDLHNKIIHVRL 420
Query: 465 TSVGRWSVFGEV 476
VFGEV
Sbjct: 421 KKNFNDYVFGEV 432
>gi|229075984|ref|ZP_04208957.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
gi|229104941|ref|ZP_04235597.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
gi|229117807|ref|ZP_04247171.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
gi|423377832|ref|ZP_17355116.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1O-2]
gi|423547613|ref|ZP_17523971.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB5-5]
gi|423622602|ref|ZP_17598380.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD148]
gi|228665604|gb|EEL21082.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
gi|228678435|gb|EEL32656.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
gi|228707096|gb|EEL59296.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
gi|401179334|gb|EJQ86507.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB5-5]
gi|401260722|gb|EJR66890.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD148]
gi|401636098|gb|EJS53852.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1O-2]
Length = 450
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 215/431 (49%), Gaps = 28/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVG 468
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|383620560|ref|ZP_09946966.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|448697917|ref|ZP_21698795.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|445781283|gb|EMA32144.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
Length = 417
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 219/440 (49%), Gaps = 51/440 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG E E + G R+LH ++
Sbjct: 65 SDETADLYITGCMALAQGE---------------------EFAEADVDG---RVLHWDEV 100
Query: 180 PA--------LDLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
P P V + V ILPI GC+ C+YC TK A G + S ++E V +
Sbjct: 101 PEAVTNGECPTTTPDVEPILDGVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
R ++ G KE+ ++ +DTG YG D G L + E+ DG +R+GM NP +
Sbjct: 161 ARALVHAGAKEIRITGQDTGVYGWDEGERKLHRLLERICEI--DGDFRVRVGMANPKGVH 218
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+E+A V + +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + +
Sbjct: 219 GIREELAAVFADNEELYDFLHAPVQSGSNDVLGDMRRQHQVGEYLEVVETFDDRLDYWTL 278
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
+TD I GFP ET++D Q++ L++E + ++++++F RPGT AA MK + V K+RS+
Sbjct: 279 STDFIVGFPTETEDDHRQSLELLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSK 338
Query: 409 ELTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLG 457
E+++ V E + +G R + + + E AD + Y Q++V + G G
Sbjct: 339 EMSALKREIVSEVYESMVGQR-REDCLVVEEGTADSVKCRDSAYRQIIVQNADDHGLEPG 397
Query: 458 TSALVKITSVGRWSVFGEVI 477
+++T+ FGE I
Sbjct: 398 DFVDLEVTAHETMYAFGEPI 417
>gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|416999213|ref|ZP_11939882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|333977366|gb|EGL78225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
Length = 437
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 221/449 (49%), Gaps = 42/449 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K+ + V GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P + +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354
Query: 405 KRSRELTSVFEAFTPYLG--MEGRV------------ERIWITEIAADGIHLGYVQVLVP 450
R + L V + L MEG+V E +W + + + VL P
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKM------VLFP 408
Query: 451 STGNM-LGTSALVKITSVGRWSVFGEVIK 478
++ +G + I W +G ++K
Sbjct: 409 KDDSLSIGQTVPAHIDKAQTWVCYGSIVK 437
>gi|229047455|ref|ZP_04193047.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
gi|228723899|gb|EEL75252.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
Length = 509
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDPLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ----VLVPS 451
+ L ++ E + Y G I E+ DG + GY + V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|289423896|ref|ZP_06425689.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289155673|gb|EFD04345.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 442
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 216/436 (49%), Gaps = 39/436 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
T GC NQ ++E M GY + E AD+++INTCTV S I K K
Sbjct: 8 TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K + V GC Q S ++ E+E V++V G +V+ +EE L KL
Sbjct: 68 NPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNSKLS 119
Query: 181 ALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+D + KVR + +EI + I GC CTYC +ARG + S ++ +
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDEIREE 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ T+ +G KEV L+ +YG+D+ ++ IL + I A DG +R+ P
Sbjct: 180 IITLANNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPVLFT 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ I E+ + + H+ +QSG+D+ L MNR YT ++++ VDTL + + + +
Sbjct: 239 DEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDVMLT 296
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TD+I GFPGET+EDF++T+ +KE K +H+ ++ PR GTPAA MK +V + RS
Sbjct: 297 TDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQFRSD 356
Query: 409 ELTSV----FEAFT-PYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTS 459
L ++ F+ T Y+ GR + E+ +G + G Y+++ V S ++ G
Sbjct: 357 ALLNLSKKNFKENTEKYI---GRPLNVLFEEVDKEGYYEGLSDNYIRIKVKSDKDIRGQI 413
Query: 460 ALVKITSVGRWSVFGE 475
KI + GE
Sbjct: 414 LEAKIVDIRDDYCIGE 429
>gi|229019534|ref|ZP_04176351.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
gi|229025776|ref|ZP_04182175.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
gi|423389373|ref|ZP_17366599.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-3]
gi|423417765|ref|ZP_17394854.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-1]
gi|228735484|gb|EEL86080.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
gi|228741790|gb|EEL91973.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
gi|401106936|gb|EJQ14893.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-1]
gi|401641464|gb|EJS59181.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-3]
Length = 450
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 224/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + +++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEDLIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|229098781|ref|ZP_04229719.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
gi|423440940|ref|ZP_17417846.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X2-1]
gi|423448892|ref|ZP_17425771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5O-1]
gi|423464005|ref|ZP_17440773.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-1]
gi|423533368|ref|ZP_17509786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB2-9]
gi|423541377|ref|ZP_17517768.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB4-10]
gi|228684625|gb|EEL38565.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
gi|401129486|gb|EJQ37169.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5O-1]
gi|401172565|gb|EJQ79786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB4-10]
gi|402417601|gb|EJV49901.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X2-1]
gi|402420272|gb|EJV52543.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-1]
gi|402463587|gb|EJV95287.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB2-9]
Length = 450
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 215/431 (49%), Gaps = 28/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVG 468
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|171464142|ref|YP_001798255.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|229890593|sp|B1XS06.1|MIAB_POLNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|171193680|gb|ACB44641.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 448
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 133/448 (29%), Positives = 229/448 (51%), Gaps = 37/448 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KTFGC N+ DS MA L A G +TD E+AD+ L+NTC+++ ++ + + +
Sbjct: 4 LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDRPEDADVVLLNTCSIREKAEDKVFSDLG 63
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ + KK + V GCV +G + + V +V G Q + R+ +++ K E
Sbjct: 64 RLRELKKTKPNLLIGVGGCVASQEGQQIVSHAPYVDVVFGPQTLHRLSDLIA---KRRET 120
Query: 172 RLLHRK-KLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
L P ++ LP R+ + + I GC C+YC + RG S + + +
Sbjct: 121 GLFQVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRSFDDV 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGM 282
+ V + + GVKE+ L ++ AY +G I LL + E+P G +R
Sbjct: 181 LTEVAGLASKGVKEIVLLGQNVNAYLGKMGDRQEIADFALLIEYIVEIP--GVERIRFTT 238
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
++P + L ++ + P + S LH+PVQ GSDA+LSAM R YT +F++++ + +
Sbjct: 239 SHPKEFTQRLIDV--YTKVPKLVSHLHLPVQHGSDAMLSAMKRGYTALEFKSIIRKMRAV 296
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
P + +++D I GFPGET+ DF + + +++E F F PRPGTPAA + P
Sbjct: 297 RPDLTLSSDFIVGFPGETEADFEKLLKMVEELNFDNSFCFIFSPRPGTPAANLHDDTPYE 356
Query: 402 VVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG-------YVQVLVPST 452
V KR + L ++ E+ + M G +ER+ I +A DGI+L + P+
Sbjct: 357 VKLKRLQTLLALVESQANQISQKMLGNIERVLIEGLAKDGINLQGRAENNRVIHFTAPAQ 416
Query: 453 G--NMLGTSALVKITSVGRWSVFGEVIK 478
N++G ++IT V +++ G++++
Sbjct: 417 NIENLIGQMVDIRITEVLNYTLRGKLVE 444
>gi|394994048|ref|ZP_10386784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
gi|393805127|gb|EJD66510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
Length = 509
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 219/435 (50%), Gaps = 24/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + + EGR + + + + I GY + LV G + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 460 ALVKITSVGRWSVFG 474
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|409723333|ref|ZP_11270609.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|448722015|ref|ZP_21704556.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|445790418|gb|EMA41080.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
Length = 424
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 212/431 (49%), Gaps = 32/431 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ + + AD+ ++NTCTV +++ M
Sbjct: 3 SYHIETYGCTANRGESREIERRLRDGGHHPAEGPKAADVAILNTCTVVEKTETNMLRRAR 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLLHRK 177
+ + LVV GC+ + + G ++ VV E T G E
Sbjct: 63 ELEEETADLVVTGCMALAQGEQFADVDARVCGWDEVPEVVRNGECPTTAPGTE------- 115
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S +E V + R ++ G
Sbjct: 116 --PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL+ I +G +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDEGERKLHRLLDRI---CDIEGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
EV + +Y FLH+PVQSGSD VL AM R++ + +FR VV+T + +ATD I G
Sbjct: 224 EVFAENEKLYDFLHIPVQSGSDDVLGAMRRQHQVREFREVVETFDAHLDHWTLATDFIVG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP ETD D ++ L++E ++++++F RPGT AA MK + + K+RS +T +
Sbjct: 284 FPTETDADHEASMELLRETTPERINVTRFSKRPGTDAADMKGLGGTLKKERSSAMTDLKM 343
Query: 416 AF--TPYLGMEGRVERIWITEIA-ADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
Y M G + + E D + Y QV++ G G V +TS
Sbjct: 344 DVVENAYRSMVGECHEVLVVEQGTGDSVKAYDEAYRQVIIREADERGIEPGDVVEVVVTS 403
Query: 467 VGRWSVFGEVI 477
FGE +
Sbjct: 404 QNTVYAFGEPV 414
>gi|375362347|ref|YP_005130386.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731627|ref|ZP_16170750.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451346926|ref|YP_007445557.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
gi|371568341|emb|CCF05191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073840|gb|EKE46830.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449850684|gb|AGF27676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
Length = 509
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 219/435 (50%), Gaps = 24/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + + EGR + + + + I GY + LV G + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 460 ALVKITSVGRWSVFG 474
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|410729530|ref|ZP_11367607.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
gi|410595632|gb|EKQ50333.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
Length = 467
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 142/463 (30%), Positives = 224/463 (48%), Gaps = 34/463 (7%)
Query: 42 DNHLSKTGSLSPKIPGTET-----IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
DN +K LS K P T + T GC N ++E MA + GY +TD + A
Sbjct: 12 DNDKTKLEKLSNKEPAKNTEGKSLVAFATLGCRVNHYETEAMAEKFIREGYEVTDFNNFA 71
Query: 97 DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GV 152
D+++INTC+V + S +I++ + A K ++A GC Q ++ +EGV +V G
Sbjct: 72 DVYVINTCSVTNMSDKKSRQIISRARRANKNAIIAAVGCYSQVAPEEVSNIEGVDVVLGT 131
Query: 153 QQIDRVVEVVEETLKGHEVRL-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
+ +V V + + +L L K+ L++ + + +K L I GC C
Sbjct: 132 RNKGDIVYYVNKAKDEQKPQLMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCA 190
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YC + RG S + ++ ++ + G KE+ LS T +YG D+ N+ ++ ++
Sbjct: 191 YCLIPYTRGTTCSKDPQKVLDEIKKLSEHGFKEIILSGIHTASYGVDLEGNITLI--TLL 248
Query: 268 AELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
E+ DG +RIG P F + E ++ C H+ +QSG DA L MNR
Sbjct: 249 EEIEKMDGIERVRIGSIEPSFFTNEVIEKMRKMKKLCPQ--FHLSLQSGCDATLKRMNRR 306
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
YT ++ V+ + E + I TD+I GFPGETDE+F++T +K+ K + HI +F P
Sbjct: 307 YTAKEYEDAVNRIRENLKDASITTDVIVGFPGETDEEFSETYEYLKKLKLTKTHIFKFSP 366
Query: 387 RPGTPAARMKKVPSAVVK-KRSR---ELTSVFEA-FTPYLGMEGRVERIWITEIAA---- 437
R GT AA M VVK KRS+ EL + E F+ L GR + + + +
Sbjct: 367 RKGTKAADMPNQVDGVVKDKRSKALIELNAKNEGDFSKSLI--GRELDVLVEQEVSNKPG 424
Query: 438 --DGIHLGYVQVLVPS-TGNMLGTSALVKITSVGRWSVFGEVI 477
+G YV+V + S NM+G L +I V G++I
Sbjct: 425 VFEGYTRNYVKVEIQSGNENMVGKIILCRIEEASGDYVIGKII 467
>gi|188585813|ref|YP_001917358.1| MiaB family RNA modification protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 446
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 210/438 (47%), Gaps = 30/438 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTD-NSEE---ADIWLINTCTVKSPSQSAMDTLIAK 120
TFGC NQ DSE + G+ ++D N +E D+ +INTCTV + I K
Sbjct: 11 TFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKARQHIRK 70
Query: 121 CKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL--- 173
K V+A GC PQ + +K LEGV IV G++ +VE+VE+ L +
Sbjct: 71 LKRRNPNCVIAVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAI 130
Query: 174 -LHRKKLPALDLPKVRRNKFVE------ILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
LH + P + ++ F + L I GC C+YC +ARGHL S E +
Sbjct: 131 HLHDSR-PKGEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYARGHLRSRPPEDV 189
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ ++ +++G KE+ L+ + GAYGR+ NLP L + + G +R+ P
Sbjct: 190 ISEIKQAVSNGFKEIVLTGINLGAYGRE-NSNLPNLATLLDKIIHLKGDYRIRLSSCEPQ 248
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I L E+ C + LH+P+QSG + +L AMNR+Y+ D+R +V E P +
Sbjct: 249 EITIGLLELVTNSEKICKH--LHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAREKSPSI 306
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
I TDII GFPGE+ F T +K+ F +HI Q+ PR TPA +V S K
Sbjct: 307 AITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVHSKEKKA 366
Query: 406 RSRELTSVFEAFTPYLGMEGRVERIWI-----TEIAADGIHLGYVQVL--VPSTGNMLGT 458
RS+EL + + + + + + E A G+ Y++V V S N+
Sbjct: 367 RSQELIEISRDLSRVYHEQFIDKTVPVLVEKHEEDVASGVSDTYLKVTFNVESEINLYNK 426
Query: 459 SALVKITSVGRWSVFGEV 476
V+I S V+GE+
Sbjct: 427 ICQVQINSADEEMVYGEL 444
>gi|228910147|ref|ZP_04073966.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
200]
gi|228849430|gb|EEM94265.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
200]
Length = 450
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 223/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYL--GMEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKSGYPYNEAQFVRVL 439
>gi|154686118|ref|YP_001421279.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens FZB42]
gi|429505255|ref|YP_007186439.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|229890448|sp|A7Z4X2.1|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42]
gi|429486845|gb|AFZ90769.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 509
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 219/435 (50%), Gaps = 24/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + + EGR + + + + I GY + LV G + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 460 ALVKITSVGRWSVFG 474
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|448327532|ref|ZP_21516856.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
gi|445617779|gb|ELY71371.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
Length = 417
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 209/404 (51%), Gaps = 28/404 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++ V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIVENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICEI--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + ++TD I GFP
Sbjct: 229 AEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDSALDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
ETD D Q++ L++E + ++++++F RPGT AA +K + + K+RS+E++ V
Sbjct: 289 ETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKREIV 348
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGN 454
+A+ +G E R + + + + AD + Y Q++V + +
Sbjct: 349 ADAYADMVG-ETREDVLVVEDGTADSVKCRDSAYRQIIVQNASD 391
>gi|423483893|ref|ZP_17460583.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-2]
gi|401141444|gb|EJQ48999.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-2]
Length = 450
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 220/443 (49%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|452855648|ref|YP_007497331.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079908|emb|CCP21666.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 509
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 219/435 (50%), Gaps = 24/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + + EGR + + + + I GY + LV G + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 460 ALVKITSVGRWSVFG 474
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|302389477|ref|YP_003825298.1| MiaB family RNA modification protein [Thermosediminibacter oceani
DSM 16646]
gi|302200105|gb|ADL07675.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani
DSM 16646]
Length = 441
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/436 (30%), Positives = 212/436 (48%), Gaps = 30/436 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ +S+ MA GY L + AD+++INTCTV + +I K +
Sbjct: 15 TLGCKVNQYESDAMAELFKNRGYELVGFDDVADVYVINTCTVTNEGARKSRQIIRKAARR 74
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ + + V GC Q + ++ + GV +V G + ++V++VE+ K +E K +
Sbjct: 75 NPEATIAVVGCYAQLEAEEVSRIPGVDVVVGTKDRHKIVDLVEQAGKNNE------KIIE 128
Query: 181 ALDLPKVR----------RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
D+ + R R + L I GC C+YC + RG + S T+ES++
Sbjct: 129 VEDIMQTRNFEEIAFRGHRQRTRAFLKIQEGCNMFCSYCIIPYVRGPVRSRTLESIIREA 188
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ DG KE+ L+ G YG D P L + I +G +R+ + +
Sbjct: 189 ENLAGDGFKEIVLTGIHLGLYGADFKGG-PTLYDVIERLSRIEGIKRIRLSSIEAMELSD 247
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L + L + C + H+P+QSGSD +L MNR YT ++F + + +++P + I T
Sbjct: 248 DLIKKLASLDNFCHH--FHIPLQSGSDRILKLMNRRYTTAEFEERLRFIRDIMPDVGITT 305
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
D+I GFPGETDEDF T I+ F ++H+ +F PR GTPAA M ++P V + RSRE
Sbjct: 306 DVIVGFPGETDEDFEITRKFIERAAFSRLHVFKFSPRKGTPAAEMPDQIPGPVKESRSRE 365
Query: 410 LTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVK 463
L + G+ G+V + E G++ G Y++V V S ++ V+
Sbjct: 366 LIRLSRRLERDFRDGLTGKVLDVLFEERDNRGLYHGLTDNYIRVAVWSDQDLHNRLLPVR 425
Query: 464 ITSVGRWSVFGEVIKI 479
+ +FGE+ K
Sbjct: 426 LIENRDEYIFGEIKKF 441
>gi|229174985|ref|ZP_04302504.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
gi|228608446|gb|EEK65749.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
Length = 450
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 222/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|222098978|ref|YP_002533546.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
neapolitana DSM 4359]
gi|221571368|gb|ACM22180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
DSM 4359]
Length = 443
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 136/434 (31%), Positives = 229/434 (52%), Gaps = 23/434 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + RV E V++ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R ++ + I GC CTYC + RG S + ++ V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ + ++P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAISSD 296
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
II GFP ET+EDF +TV+L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQF 356
Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--YVQVLVPSTGN--MLGTSALVK 463
L ++ + L G+ RI + A +G+ G ++ G M+G A VK
Sbjct: 357 LMNLQKRINRKLNERYRGKTVRIIVEAQAKNGLFYGRDIRNKIIAFEGEDWMIGRFADVK 416
Query: 464 ITSVGRWSVFGEVI 477
+ + ++G+V+
Sbjct: 417 VEKITAGPLYGKVV 430
>gi|188582640|ref|YP_001926085.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium populi BJ001]
gi|229890615|sp|B1ZJR5.1|MIAB_METPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|179346138|gb|ACB81550.1| RNA modification enzyme, MiaB family [Methylobacterium populi
BJ001]
Length = 446
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/446 (31%), Positives = 219/446 (49%), Gaps = 39/446 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ T++ EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATESVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + P D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPVEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHAGNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRTARP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
+ +++D I GFPGE+D DF +T+ L+ E F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGESDADFAETMRLVAEIGFAAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 404 KKRSRELTSVFE----AFTPYLGMEGRVERIWIT-------EIAADGIHLGYVQVLVPST 452
+R L + + AF G V I + ++A HL VQ P++
Sbjct: 359 TERLAALQQLLDQQRHAFNA--AAVGTVAEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS 416
Query: 453 GNMLGTSALVKITSVGRWSVFGEVIK 478
+GT V+IT G S+FGEV++
Sbjct: 417 --TIGTLVPVRITRAGSNSLFGEVLE 440
>gi|407706837|ref|YP_006830422.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis
MC28]
gi|407384522|gb|AFU15023.1| RNA modification enzyme, MiaB family [Bacillus thuringiensis MC28]
Length = 450
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 214/431 (49%), Gaps = 28/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGAEELIG 416
Query: 458 TSALVKITSVG 468
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7]
gi|384159316|ref|YP_005541389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|384164249|ref|YP_005545628.1| AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|384168363|ref|YP_005549741.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385264828|ref|ZP_10042915.1| MiaB [Bacillus sp. 5B6]
gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus amyloliquefaciens DSM 7]
gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|341827642|gb|AEK88893.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385149324|gb|EIF13261.1| MiaB [Bacillus sp. 5B6]
Length = 509
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 219/435 (50%), Gaps = 24/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + + EGR + + + + I GY + LV G + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 460 ALVKITSVGRWSVFG 474
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|423084190|ref|ZP_17072695.1| tRNA methylthiotransferase YqeV [Clostridium difficile
002-P50-2011]
gi|423086753|ref|ZP_17075144.1| tRNA methylthiotransferase YqeV [Clostridium difficile
050-P50-2011]
gi|357543237|gb|EHJ25270.1| tRNA methylthiotransferase YqeV [Clostridium difficile
002-P50-2011]
gi|357545862|gb|EHJ27825.1| tRNA methylthiotransferase YqeV [Clostridium difficile
050-P50-2011]
Length = 432
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 215/433 (49%), Gaps = 34/433 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY ++ E AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
++A GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 68 NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122
Query: 181 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ + +G KEV L+ +YG+D+ LL+ I + +R+ P +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
D+I GFPGET+E+F +T ++E + Q+HI ++ PR GTPAA M+ +V + RS +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLREIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358
Query: 410 LTSV----FEAF-TPYLGMEGRVERIWITEIAA---DGIHLGYVQVLVPSTGNMLGTSAL 461
L ++ F F T ++G E V ++ I +G+ Y++V+V S N+ G
Sbjct: 359 LLNLSKVNFNKFATKFIGRELDV--LFEQNIEGNKYEGLTSNYIRVVVESDKNIQGQILK 416
Query: 462 VKITSVGRWSVFG 474
VKI V V G
Sbjct: 417 VKINDVKDEYVEG 429
>gi|124023692|ref|YP_001017999.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9303]
gi|229890600|sp|A2CB74.1|MIAB_PROM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123963978|gb|ABM78734.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9303]
Length = 480
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 209/412 (50%), Gaps = 28/412 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++TFGC N++DSE MAG L A GY EAD+ L NTCT++ ++ + + +
Sbjct: 30 SFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLG 89
Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 90 RQARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNGQQV 149
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ DL RR+ + +NV GC CTYC RG S + E++
Sbjct: 150 VATDDNHILE-DLTTARRDSTI-CAWVNVIYGCNERCTYCVVPSVRGKEQSRSPEAIRLE 207
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + A G +E+ L ++ AYGRD+ G L + + +G +R +
Sbjct: 208 IEGLAARGFREITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHIHDVEGIERIRFATS 267
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L E L P V H+P QSG + VL AM R YT+ +R +V+ + EL+
Sbjct: 268 HPRYFTERLIEACFDL--PKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVNRIRELM 325
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAV 402
P I+TD+I FPGETD F T+NL++E F QV+ + + PRP TPAA ++P V
Sbjct: 326 PDAAISTDVIVAFPGETDAQFQNTLNLVEEVGFDQVNTAAYSPRPNTPAATWSNQLPEVV 385
Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST 452
+R ++L ++ E A G+VE ++ A+GI+ Q L+ T
Sbjct: 386 KVERLKQLNALVERVALQRNSRYSGKVE-----QVLAEGINPKKPQQLMGRT 432
>gi|428279299|ref|YP_005561034.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
Length = 509
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 220/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKTAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + I GY + LV G +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|448320337|ref|ZP_21509824.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
gi|445605802|gb|ELY59717.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
Length = 417
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 219/431 (50%), Gaps = 33/431 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRADEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG +E + G V D V E V E
Sbjct: 65 ADETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+ ++ +DTG YG D G L + + +L +G +R+GM NP + +E+A V
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLSEICDL--EGEFRVRVGMANPKGVHGIREELATV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDHLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + +V++++F RPGT AA MK + + K+RS+E+++
Sbjct: 288 TETDHDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKREI 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITS 466
V EA +G E R + + + + AD + Y Q++V + G G +++T+
Sbjct: 348 VGEAHASMVG-EVREDCLVVEDGTADSVKCRDSAYRQIIVQNASDHGIEPGDFVDLEVTA 406
Query: 467 VGRWSVFGEVI 477
FGE +
Sbjct: 407 HETMYAFGEPV 417
>gi|332799055|ref|YP_004460554.1| MiaB-like tRNA modifying protein [Tepidanaerobacter acetatoxydans
Re1]
gi|332696790|gb|AEE91247.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter acetatoxydans
Re1]
Length = 435
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 213/432 (49%), Gaps = 27/432 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ +S +A GY + D +AD+++INTC V + S +I K
Sbjct: 8 TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRKAIRN 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ + V GC Q + ++ ++GVS+ VG + R+V++VE+ + + ++
Sbjct: 68 NPSAKVAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNIMK 127
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
++ + L K R K L I GC C+YC +ARG + S ++++++ +++
Sbjct: 128 QQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSLAK 186
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
DG KE+ L+ G YGRD LL+ I +G +R+ +E ++
Sbjct: 187 DGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAMELT 240
Query: 296 AEVLRHPC-VYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E L+ C + F HVP+QSG D VL MNR YT +FR +D + +L+P I TD
Sbjct: 241 DEFLKSLCGIKKFCHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASITTD 300
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
+I GFPGET+E+F QT N IKE F ++H+ F PR GT A M ++ +V +RS L
Sbjct: 301 VIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIEKSVKVERSHRL 360
Query: 411 TSVFEAFTPYLGME--GRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKI 464
S+ E ++++ + D + G Y++V V S ++ V++
Sbjct: 361 ISLSEKLEKDFCKRFVNSIQKVLFEDKKDDNFYEGLTENYIKVGVKSKQDLHNKIIHVRL 420
Query: 465 TSVGRWSVFGEV 476
VFGEV
Sbjct: 421 KKNFNDYVFGEV 432
>gi|423615348|ref|ZP_17591182.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD115]
gi|401261027|gb|EJR67194.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD115]
Length = 450
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 215/431 (49%), Gaps = 28/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GT AARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTAAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--------YVQVLVPSTGNMLG 457
L + EG V I E DG G Y++++ + +G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEEFIG 416
Query: 458 TSALVKITSVG 468
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|423549948|ref|ZP_17526275.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
ISP3191]
gi|401189564|gb|EJQ96614.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
ISP3191]
Length = 450
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 222/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + E+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKNYNLAGLLRDMETEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|384566957|ref|ZP_10014061.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora glauca K62]
gi|384522811|gb|EIF00007.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora glauca K62]
Length = 498
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 192/372 (51%), Gaps = 24/372 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GYAL + EE D+ ++NTC V+ + + +
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALAADGEEPDVVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK KP + V GC+ Q R +K V +V G I + ++E
Sbjct: 62 LGHLRAAKTAKPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNIASLPVLLERARHNA 121
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 285
V ++A+GV EV L ++ +YG + G +A L GS + R+ T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDR-----HAFGKLLRACGSVEGLERVRFTSP 236
Query: 286 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
F + ++ +AE P V LH+P+QSGSD VL AM R Y + F +++ + E
Sbjct: 237 HPAAFTDDVIEAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLGILERVREA 293
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 401
+P I TDII GFPGET+EDF QT+ +++E +F Q+ PRPGTPAA M +VP
Sbjct: 294 MPDAAITTDIIVGFPGETEEDFEQTLEVVREARFSSAFTFQYSPRPGTPAAEMPDQVPKE 353
Query: 402 VVKKRSRELTSV 413
VV++R L +
Sbjct: 354 VVQERYDRLVEL 365
>gi|291436867|ref|ZP_06576257.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
gi|291339762|gb|EFE66718.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
Length = 505
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 195/380 (51%), Gaps = 16/380 (4%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
S + GT T ++T+GC N DSE +AG L GY A + +AD+ + NTC V+
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVREN 66
Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
+ + + + K A++P + V GC+ Q RD +K V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126
Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
++ + ++A+GV E+ L ++ AYG DIG + + A DG +R
Sbjct: 187 DRRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIDGLERVR 245
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+P + + IA + P V LH+P+QSGSDAVL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKV 303
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 399 PSAVVKKRSRELTSVFEAFT 418
P VV++R L ++ E +
Sbjct: 364 PKKVVQERYERLVALQEEIS 383
>gi|224541752|ref|ZP_03682291.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
15897]
gi|224525356|gb|EEF94461.1| tRNA methylthiotransferase YqeV [Catenibacterium mitsuokai DSM
15897]
Length = 435
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/432 (32%), Positives = 209/432 (48%), Gaps = 19/432 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N +SE M GY D AD+++INTCTV + S +I
Sbjct: 3 TVAFHTLGCKVNSYESEAMLEIFKKRGYETIDFESPADVYVINTCTVTNTGDSKSRQMIR 62
Query: 120 KCKSAKKPLV--VAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRL 173
K V V GC Q S ++ +EGVS+V G Q +V+ VEE H+ V++
Sbjct: 63 KAHRTNPEAVICVVGCYSQVASEEITGIEGVSVVLGTQHRASIVDFVEEYKSTHKQIVKI 122
Query: 174 LHRKKLPALDLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ K+ + + NK L I GC CTYC +ARG + S E ++ + +
Sbjct: 123 ENVMKVSRFEDLSIHAFENKTRAFLKIQDGCNNFCTYCIIPYARGGVRSRPKEDVLRQAQ 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G E+ L+ T YG D+ + LL + ++ G LRI + +
Sbjct: 183 ELVDRGFVEIVLTGIHTAGYGVDLENYSFYDLLVDLTTKIK--GLKRLRISSIEMSQVSD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ E+ + + P + LH+P+QSG+D++L M R Y ++F L E +PG+ I T
Sbjct: 241 EIIEL--IGKSPIIVDHLHIPIQSGTDSILRRMARHYNTAEFEKKYFELKEALPGISITT 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
D+I GFPGET+EDF T N IK+ F Q+H+ + R GTPA RM +VP V K+R R
Sbjct: 299 DVIVGFPGETEEDFVDTYNWIKKLHFNQLHVFPYSRRRGTPADRMPSQVPGDVKKERVRR 358
Query: 410 LTSVFEAF-TPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKI 464
L + + T + E E + E DG +G Y++VLV T G VK+
Sbjct: 359 LLKLSDELKTEFALSEMNKELEVLIEEEKDGYMVGHASNYLKVLVADTSLKEGHIYKVKV 418
Query: 465 TSVGRWSVFGEV 476
T + + G V
Sbjct: 419 TDHRGYDLIGVV 430
>gi|284048550|ref|YP_003398889.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952771|gb|ADB47574.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 442
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 190/368 (51%), Gaps = 30/368 (8%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N+SDSE+ AGQLS GY T++ +AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNESDSEHYAGQLSDLGYHYTEDYHDADVILINTCCVRESAEKKILGKIGEMKQVK 69
Query: 126 -----KPLVVAGCVPQ--GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K L V GC+ Q G LK+ V + +G ++ ++++ L H+ + RK
Sbjct: 70 REDPSKVLCVTGCMAQKDGEDFLKKYPQVDLLIGTAHVNNFSAILQDYL--HQTQ---RK 124
Query: 178 KLPALDL---PK------VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
DL P+ VR++ + +PI GC CTYC + RG S + E++
Sbjct: 125 SGMFNDLTVMPREFEGHFVRKSSYAAWVPIMYGCNNFCTYCIVPYVRGRERSRSAEAICE 184
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
+R + G +E L ++ +YG+D G LL + A +P G +R ++P
Sbjct: 185 EIRKAVDQGYREFTLLGQNVNSYGKDRGDKDAFAALLRQVDA-IP--GVERVRYMTSHPR 241
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ E L +H C + H+PVQSGS ++ AMNR YT + +VDT+ + VP
Sbjct: 242 DMSEELIRTVAESKHVCKH--FHIPVQSGSTRIMQAMNRGYTRESYLHLVDTIRKYVPEA 299
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
+ TDII GFPGET+EDF +T++L + + + R GTPAA M+ +VP AV K
Sbjct: 300 VLTTDIIVGFPGETEEDFQETLSLFDRVSYDAAYTFIYSKRSGTPAAAMEAQVPEAVKKD 359
Query: 406 RSRELTSV 413
R L +
Sbjct: 360 RLNRLMEL 367
>gi|449094387|ref|YP_007426878.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
gi|449028302|gb|AGE63541.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
Length = 520
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 220/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + +P +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKAAMPNASL 375
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 376 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 435
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + I GY + LV G +G
Sbjct: 436 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 495
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 496 VRVKIQQAKTWSLDGEMV 513
>gi|402312108|ref|ZP_10831038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
ICM7]
gi|400370769|gb|EJP23751.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
ICM7]
Length = 475
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 190/361 (52%), Gaps = 20/361 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G L+ GY +N E+AD+ L NTCTV+ + + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
K+ + + GC+ Q + ++++++ + G I ++ E++ E T K V
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQVVN 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ ++ LP R F + I GC C+YC + RG S E ++ +R
Sbjct: 161 VMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIRG 220
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ADGVKE+ L ++ +YGR + ++ LL+ I DG LR +P + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKDLSD 277
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ E+ + + C + LH+P+QSGS A+L MNR YT + +V + +P + + T
Sbjct: 278 EVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVYTKEGYLDLVRRIKAAIPDISLTT 335
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII GFPGET+EDF T++++KE ++ + R GTPAA+M+ ++ V+K R
Sbjct: 336 DIIVGFPGETEEDFLDTLDVVKEVRYDSAFTFIYSKRSGTPAAKMEDQIDPKVIKDRFDR 395
Query: 410 L 410
L
Sbjct: 396 L 396
>gi|160903280|ref|YP_001568861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Petrotoga
mobilis SJ95]
gi|229890590|sp|A9BGV7.1|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95]
Length = 439
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 214/440 (48%), Gaps = 24/440 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
Y++TFGC N ++SE MAG L G+ T+N +EADI LIN+C V+ +++ M I
Sbjct: 3 FYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIGG 62
Query: 120 --KCKSAKKPLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K K K L+ V GC + R+ L+ + + V G + + + +V+ L G
Sbjct: 63 YGKLKDENKNLILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRALNGKRFA 122
Query: 173 LLHRK-KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
K D+PK+ +K + I GC C+YC + RG S +E ++ V
Sbjct: 123 DFSDKLNDVNYDIPKMPISKHHAWITIIYGCNKYCSYCIVPYTRGFEKSRPMEDIIREVE 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+ G KE+ ++ +YG+D G L I D + + P I +
Sbjct: 183 SYAKKGYKEITFLGQNVDSYGKDFGDKKSKLDLLIQKAAEFDSIKRIWFLTSYPSDITDS 242
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L I V ++ H+P QSGS+ +L AMNR+YT +F +V+ + + V + +++D
Sbjct: 243 L--IQTVANEEKAANYFHLPAQSGSNKILKAMNRKYTREEFIELVNKVKKEVANVTVSSD 300
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
I GFP ETDEDF +TV+LIK+ +F +++I+++ PR GT A + + VP + KR +
Sbjct: 301 FITGFPSETDEDFEETVDLIKQCRFERINIAEYSPREGTIAYKYQNDDVPKHIKNKRLQY 360
Query: 410 LTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQ----VLVPSTGNMLGTSA 460
L + E YL E V I + +G ++G ++ S + G
Sbjct: 361 LMELQKRINLEENEKYL--EQEVVIIQEGKAGKNGTYMGRTMNNKLIIFESNEELNGEFL 418
Query: 461 LVKITSVGRWSVFGEVIKIL 480
VK+ + ++GEV+ L
Sbjct: 419 KVKVNKITPGPLYGEVVNNL 438
>gi|348026751|ref|YP_004766556.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
20460]
gi|341822805|emb|CCC73729.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
20460]
Length = 373
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 194/369 (52%), Gaps = 22/369 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
++GC N SDSE+ AGQL GY T++ + AD+ LINTC V+ ++ I + K
Sbjct: 13 SYGCQANMSDSEHYAGQLEELGYHHTEDLDTADVILINTCCVRETAEDKTLGKIGELKHL 72
Query: 125 KKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K + V GC+ Q +D K + +V G I +++E+++E + +
Sbjct: 73 KTQNPDLIIAVTGCMAQEWQDKLFKRAPHIDLVIGTHNIHKLIELIQERRSKADHYMAAD 132
Query: 177 KKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
LPA D+P R KF +PI GC CTYC + RG S ++++V ++ V A
Sbjct: 133 MSLPAFHDMPVKRFQKFFAWIPIMNGCNKFCTYCIVPYVRGREVSRPIDAIVEEIKKVAA 192
Query: 236 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHL 292
+G KE+ L ++ +YG D+ G + L+ A+ DG +R ++P +
Sbjct: 193 EGYKEITLLGQNVNSYGLDLKDGTDFSKLVAAVD---DIDGIERVRYMTSHPKDMTFAMI 249
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IA+ + V + +H+P+Q GS+ +L MNR YT+ + +VD + +P + + TDI
Sbjct: 250 DAIADSQK---VVNHMHLPIQCGSNELLKKMNRGYTVEHYLELVDYARKRMPDLVLTTDI 306
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 411
I GFPGET+ F T+NL+K ++ + + PR GTPAA+M+ ++P +++SR L
Sbjct: 307 IVGFPGETEAMFEDTLNLLKRVQYDMAYTFIYSPRTGTPAAKMEDQIPQ---EEKSRRLQ 363
Query: 412 SVFEAFTPY 420
+ E Y
Sbjct: 364 RLMEVQNVY 372
>gi|239617912|ref|YP_002941234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kosmotoga
olearia TBF 19.5.1]
gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
Length = 440
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/449 (27%), Positives = 223/449 (49%), Gaps = 49/449 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I +TFGC N +D+E MAG L + GY + DN EEAD+ ++NTC V+ ++ + + +
Sbjct: 3 IAFRTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLGR 62
Query: 121 CKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHE-VR 172
+S KK + V+GCV + ++ LK E + G + I RV E +E +KG V
Sbjct: 63 LRSLKKKNRNLIIGVSGCVAEKEKEALLKREEVNFVFGTRSISRVNEFLERAIKGERFVE 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L P++R ++ + I GC C+YC + RG S ++E ++ V+
Sbjct: 123 LSDFIDEINSSTPRLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSRSMEDILNEVKR 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ + G +EV ++ +YG+D+ DGST+ + + +E +
Sbjct: 183 LASKGYREVTYLGQNVDSYGKDLA----------------DGSTLAK--LIRETLKIEQI 224
Query: 293 KEIAEVLRHPCVYS---------------FLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+ I + +P +S +H+P+QSGS+ +L AMNR YT ++ ++
Sbjct: 225 ERIWYLTSYPKDFSDELIDVIATSKRVSRSIHLPIQSGSNRILKAMNRGYTREEYLDLIR 284
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
+ VP I+TDII GFPGE+++D+ QT +L++E F +V+++ + PR GT +A+ K
Sbjct: 285 RIRTKVPDASISTDIIVGFPGESEDDYLQTKSLLEEVIFERVNLAIYSPREGTISAKYMK 344
Query: 398 --VPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLGYV----QVLV 449
VP + +R +EL + + + E G+ I + DG+ G V
Sbjct: 345 DDVPHEIKVRRLQELLELQKCLNRKINSEYIGKTVEIIVEAKHKDGMLYGRTINNKIVFF 404
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
+ ++G+ A + I ++G++++
Sbjct: 405 HGSEELIGSKAKITIEKTTAGPLYGQLVE 433
>gi|255656429|ref|ZP_05401838.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-23m63]
gi|296450124|ref|ZP_06891885.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
gi|296878505|ref|ZP_06902510.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
gi|296260887|gb|EFH07721.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
gi|296430312|gb|EFH16154.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
Length = 432
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/434 (30%), Positives = 217/434 (50%), Gaps = 36/434 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY ++ E AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKK- 66
Query: 125 KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K P + V GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 67 KNPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD---- 122
Query: 180 PALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V
Sbjct: 123 ---DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDE 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
V+ + +G KEV L+ +YG+D+ LL+ I + +R+ P
Sbjct: 180 VKKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINKIEKIERIRLSSVEPILFT 239
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I
Sbjct: 240 DEF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAIT 297
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TD+I GFPGET+E+F +T +KE + Q+HI ++ PR GTPAA M+ +V + RS
Sbjct: 298 TDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSE 357
Query: 409 ELTSV----FEAF-TPYLGMEGRVERIWITEIAA---DGIHLGYVQVLVPSTGNMLGTSA 460
+L ++ F F T ++G +++ ++ + +G+ Y++V+V S N+ G
Sbjct: 358 QLLNLSKVNFNKFATKFIGR--KLDVLFEQNLEGNKYEGLTSNYIRVVVESDKNIQGQIL 415
Query: 461 LVKITSVGRWSVFG 474
VKI V V G
Sbjct: 416 KVKINDVKDEYVEG 429
>gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
Length = 509
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 225/449 (50%), Gaps = 44/449 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++++AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTKDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LKPLKQRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKA 187
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIN 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADG-------IHLGY------VQVLV 449
+ L ++ ++ Y+G I E+ DG + GY V +
Sbjct: 425 QRLNALVNEYSIEKNKRYVGQ--------IVEVLVDGESKNNPDVLAGYTRANKLVNFVA 476
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIK 478
P + + VK+T WS+ GE+++
Sbjct: 477 PKSA--IAQLVKVKVTEAKTWSLNGELVE 503
>gi|17228807|ref|NP_485355.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc sp. PCC
7120]
gi|81772425|sp|Q8YXA3.1|MIAB_NOSS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|17130659|dbj|BAB73269.1| alr1312 [Nostoc sp. PCC 7120]
Length = 454
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 223/452 (49%), Gaps = 46/452 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAVRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEE 361
Query: 403 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-- 456
VK +R L +V A M GR+E + + E QV+ + GN L
Sbjct: 362 VKSDRLQRLNHLVNVKAAERSQRYM-GRIEEVLVEEQNPK----DQTQVMGRTGGNRLTF 416
Query: 457 ---------GTSALVKITSVGRWSVFGEVIKI 479
G +VKI V +S+ GE I++
Sbjct: 417 FKGDIHELKGQLVMVKINEVRAFSLTGEPIEM 448
>gi|289549019|ref|YP_003474007.1| MiaB family RNA modification protein [Thermocrinis albus DSM 14484]
gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
Length = 437
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 232/440 (52%), Gaps = 33/440 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KTFGC N +DSE + G L GY D EEAD+ LINTCT++ + + + +
Sbjct: 4 YIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLGEY 63
Query: 122 KS--AKKPLV---VAGCVPQGSRDLKELEGVSIVGVQ----QIDRVVEVVEETLKGHEVR 172
K K+P V V GC+ Q + +E +V + I + E++++ G+ R
Sbjct: 64 KKIKEKRPEVIIGVCGCLAQ-RMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQAGY--R 120
Query: 173 LLHRKKLPALD------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ + P D VR N + + + GC CTYC RG S ++ES+
Sbjct: 121 AIAILEEPPEDEDRMWEFKTVRDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQRSRSLESI 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR ++ADGVKE+ L ++ A+G+DI ++ LL VAE+P G +R +P
Sbjct: 181 LEEVRWLVADGVKEIHLLGQNVTAWGQDINIHFSELLYR-VAEIP--GVERIRFTTGHPS 237
Query: 287 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E + K + ++ P + LH+PVQSGS+ +L M R YT ++ + L E VPG
Sbjct: 238 DMDERIAKAMGDI---PQICEHLHLPVQSGSNRILKLMERNYTKEEYLEKIHMLREYVPG 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ +TDII GFP ET+EDF +T++++++ +F QV ++ PRP TPAA M+ ++P V
Sbjct: 295 ITFSTDIIVGFPTETEEDFEETLDVLRKVRFEQVFSFKYSPRPDTPAAYMEGQIPDEVKT 354
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQ----VLVPSTGNMLGT 458
R L S+ + + EG V+ + + E DG +G + V V + +MLG
Sbjct: 355 DRMSRLLSLQKEILAEIARSYEGTVQEV-LLESWQDGKLVGRTRTNRWVSVEGSEDMLGK 413
Query: 459 SALVKITSVGRWSVFGEVIK 478
+ V+IT +S+ G +++
Sbjct: 414 TVRVRITRSQPFSMEGIILE 433
>gi|229163255|ref|ZP_04291210.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
gi|228620318|gb|EEK77189.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
Length = 454
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 229/455 (50%), Gaps = 31/455 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWI------TEIAADGIHLG----YVQVLVPSTGNMLG 457
L + + E + I E G+++G Y++++ + +++G
Sbjct: 357 HRLIELSNQLAKEYASQFEDEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEDLIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRR 492
VKIT G + +++L +D + N++
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL---EDDVKKNQQ 448
>gi|365157922|ref|ZP_09354166.1| putative methylthiotransferase yqeV [Bacillus smithii 7_3_47FAA]
gi|363622332|gb|EHL73498.1| putative methylthiotransferase yqeV [Bacillus smithii 7_3_47FAA]
Length = 452
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 222/443 (50%), Gaps = 26/443 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D +DI++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKGAGYERVDFDSISDIYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ K+ + V GC Q S ++ E+ GV IV G Q ++++ VE+ K +
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEVLEIPGVDIVIGTQDRTKILDFVEKYQKERQPINAV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + +D+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 KNIMKNRVFEEMDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL +LL I ++ G LRI +
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGTDMKDYNLAMLLRDIEEQV--HGLKRLRISSIEASQLT 239
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + R V LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ +
Sbjct: 240 DEVIDVID--RSNIVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLNRLREALPGLAVT 297
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
+D+I GFPGET+E+F +T N +KE+KF ++H+ + R GTPAARM+ ++ V +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFVKEHKFAELHVFPYSKRTGTPAARMENQIDEEVKNERVH 357
Query: 409 ELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLGT 458
L ++ + EG V + E G++ G Y++V+ P++ +M+G
Sbjct: 358 RLITLSDQLAKEYASQFEGEVLEVIPEERYKEDPESGLYEGYTDNYLKVVFPASEDMVGK 417
Query: 459 SALVKITSVGRWSVFGEVIKILN 481
VKIT G + +++L+
Sbjct: 418 LVKVKITKAGYPYNEAQFVRVLD 440
>gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|419823795|ref|ZP_14347329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|388472034|gb|EIM08823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
Length = 509
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 196/375 (52%), Gaps = 24/375 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKTLKKENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVRR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRRGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+HL E+ +L H +H+PVQSGS VL M R+Y + + +V + +P
Sbjct: 307 DDHLVEVLGKGGNLLDH------IHLPVQSGSSEVLKLMARKYDRARYMELVGKIKAAMP 360
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
+ TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V
Sbjct: 361 NASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVK 420
Query: 404 KKRSRELTSVFEAFT 418
K+R + L + + +
Sbjct: 421 KERLQRLNDLVKEIS 435
>gi|255657963|ref|ZP_05403372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
20544]
gi|260850164|gb|EEX70171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
20544]
Length = 444
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/371 (32%), Positives = 190/371 (51%), Gaps = 31/371 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ +GC NQSD+E M GQL GY T++ EEAD+ LINTC V+ ++ + I +
Sbjct: 13 YLLVYGCQMNQSDAERMMGQLRTIGYERTESMEEADLILINTCCVRETAEDRVYGKIGEI 72
Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL--KGHEV 171
K K+ + GC+ Q D +K + V G ++ + VV+E GH V
Sbjct: 73 KRLKRENPELIFGITGCMAQKEGDALIKRAPHIDFVLGTNKVHELTHVVQEIQAEHGHVV 132
Query: 172 RL-LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ L +LP D+P R +PI GC CTYC + RG S E +V V
Sbjct: 133 DVQLGETELPD-DVPVARAGSLSAWVPIMYGCNNFCTYCIVPYVRGRERSRLPEDIVHEV 191
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +G +EV L ++ +YG+D + L +V ++P G+ F+
Sbjct: 192 EEAVKNGYEEVTLLGQNVNSYGKDHKLADFADLLKMVDKVP---------GIRRVRFMTS 242
Query: 291 HLKEIAEVL-------RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
H K++++ + H C +H+PVQ GS+ +L AMNR YT+ +R +V + +
Sbjct: 243 HPKDLSDKVIAAIRDGEHLC--EHIHLPVQYGSNRILKAMNRVYTVESYRDLVRRIRAAI 300
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
P + + TD+I GFPGETDEDF Q ++ ++E ++ + + R GTPAA M+ +V +V
Sbjct: 301 PDVSLTTDLIVGFPGETDEDFQQMLDFLREIRYDSAYTFIYSKRSGTPAATMENQVDESV 360
Query: 403 VKKRSRELTSV 413
K+R L +V
Sbjct: 361 KKERLNALMAV 371
>gi|296330914|ref|ZP_06873389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305674432|ref|YP_003866104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|350266015|ref|YP_004877322.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|296151919|gb|EFG92793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305412676|gb|ADM37795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|349598902|gb|AEP86690.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 509
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 220/438 (50%), Gaps = 24/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L ++ + EG+V + + + + I GY + LV G +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 460 ALVKITSVGRWSVFGEVI 477
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|228916942|ref|ZP_04080503.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|301055802|ref|YP_003794013.1| hypothetical protein BACI_c42790 [Bacillus cereus biovar anthracis
str. CI]
gi|228842663|gb|EEM87750.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377971|gb|ADK06875.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 450
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 222/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + E+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMETEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
Length = 437
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 223/449 (49%), Gaps = 42/449 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P + +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354
Query: 405 KRSRELTSVFEAFTPYLG--MEGRV------------ERIWITEIAADGIHLGYVQVLVP 450
R + L V + L MEG+V E +W + + + VL P
Sbjct: 355 VRLQILMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKM------VLFP 408
Query: 451 STGNM-LGTSALVKITSVGRWSVFGEVIK 478
++ +G + I W +G ++K
Sbjct: 409 KDDSLSIGQTVPAHIDKAQTWVCYGSILK 437
>gi|145590038|ref|YP_001156635.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|229890594|sp|A4T007.1|MIAB_POLSQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145048444|gb|ABP35071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 448
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 229/445 (51%), Gaps = 31/445 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KTFGC N+ DS MA L A G +TD E+AD+ L+NTC+++ ++ + + +
Sbjct: 4 LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSDLG 63
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHE 170
+ + KK + V GCV +G + + V +V G Q + R+ +++ + K G
Sbjct: 64 RLRELKKTKPHMLIGVGGCVASQEGRQIVSRAPYVDVVFGPQTLHRLSDLIAQRRKTGLS 123
Query: 171 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ ++ D LP R+ + + I GC C+YC + RG S + ++
Sbjct: 124 QVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRPFDDVLTE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNP 285
V + + GVKE+ L ++ AY +G I LL +AE+P G +R ++P
Sbjct: 184 VAGLASKGVKEIVLLGQNVNAYLGKMGDAEEIADFALLIEYIAEIP--GVERIRFTTSHP 241
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ L ++ + P + S LH+PVQ GSD++LSAM R YT ++++++ + + P
Sbjct: 242 KEFTQRLIDVYA--KVPKLVSHLHLPVQHGSDSILSAMKRGYTALEYKSIIRKMRAVRPD 299
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ +++D I GFPGETD DF + + +++E F F PRPGTPAA + P V
Sbjct: 300 LTLSSDFIVGFPGETDADFEKLLKMVQELDFDNSFCFIFSPRPGTPAANLSDDTPYEVKL 359
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL------GYVQVLVPSTGN-- 454
KR + L ++ E + + M G+ ER+ I +A DG++L V P N
Sbjct: 360 KRLQTLLALIEGQSNQISQKMLGKTERVLIEGLAKDGVNLQGRAENNRVIHFSPPDQNID 419
Query: 455 -MLGTSALVKITSVGRWSVFGEVIK 478
++G ++IT V +++ GE+++
Sbjct: 420 GLIGEMVDIRITEVLNYTLRGELVE 444
>gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-3-3Ab]
gi|123504633|sp|Q2JQX6.1|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-3-3Ab]
Length = 453
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 220/441 (49%), Gaps = 29/441 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T Y TFGC N++DSE MAG L + GY ++ +AD+ L NTCT++ ++ + + +
Sbjct: 5 TYYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVYSYLG 64
Query: 120 -----KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
K K+ L+VAGCV Q G R L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATEPVEIPE-DITKPRRDSRVTAW-INVIYGCNERCTYCIVPLVRGREQSRQPQAIRAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHSV---EGIERIRFATSHPRY 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L IA P V H+P Q+GSDAVL M R YT +R ++ + + +P
Sbjct: 240 FTEEL--IATCAELPKVCEHFHIPFQAGSDAVLKRMRRGYTQERYRQLIQLIRQYMPEAT 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
I+ D I GFPGET+ F +T+ L+++ F ++ + + PRPGTPAA +VP R
Sbjct: 298 ISADAIVGFPGETEAQFQETLQLVQDIGFDFLNTAAYSPRPGTPAAEWPDQVPEEEKSDR 357
Query: 407 SRELTSVFE--AFTPYLGMEGRVERIWI------TEIAADGIHLGYVQVLVPSTGNML-G 457
+ L + A + G+V+ + + A G G V L G
Sbjct: 358 LQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRIVFFDGDPEQLQG 417
Query: 458 TSALVKITSVGRWSVFGEVIK 478
+ V+IT+ +S+ GE++K
Sbjct: 418 SLVPVRITATRAFSLSGEIVK 438
>gi|374327055|ref|YP_005085255.1| MiaB family RNA modification protein [Pyrobaculum sp. 1860]
gi|356642324|gb|AET33003.1| RNA modification enzyme, MiaB family [Pyrobaculum sp. 1860]
Length = 417
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 225/437 (51%), Gaps = 44/437 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G D+ EAD+ LI TC V+ + I +
Sbjct: 5 YVETYGCWLAKADAEIIRQRL---GLTPVDSLREADVVLIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKLP 180
++ L+VAGC L L +I ++ E E +G E+++L R
Sbjct: 62 AASGGRLIVAGC-------LARLRPYTIKSAAPHAELIYPGEVEGGRGREMKILPRYS-- 112
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
+ +P+ VGCLG C +C TK RG G S + +V V+ + G
Sbjct: 113 ---------GGVIYTVPLQVGCLGNCAFCATKFTRGGAGYVKSADPDDVVRHVKEAVGRG 163
Query: 238 VKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+E++L+ +D YG D+ G LP +L I+ E+ +G +RIGM+ P +
Sbjct: 164 AREIFLTGQDVITYGFDMRWKPGWTLPDILERILKEV--EGEYRIRIGMSEPWVFEKFAD 221
Query: 294 EIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATD 351
+ +V++ VY + H+PVQSGSD VL AM R YT ++R +V + ++ IATD
Sbjct: 222 RLLDVVKSDGRVYRYFHLPVQSGSDRVLKAMGRRYTADEYRELVRKIRRVLGETTFIATD 281
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
II GFPGE +EDF TV L++E +F +VH+++F PRP T AA + ++VP A K+RS+ L
Sbjct: 282 IIVGFPGEGEEDFWATVKLVEELQFDKVHVARFSPRPFTEAAVIPRQVPDADKKRRSKIL 341
Query: 411 TSV-FEAFTPYLGME-GRVERIWITEIAADGIHLG----YVQVLVP---STGNMLGTSAL 461
+ + G+ G + + I E+ G+ +G Y QV+V S ++G
Sbjct: 342 SELSLRVAHLRNGLRVGSGDVVLIDEV-DHGLVVGRAGDYRQVVVKRGNSADGLMGRFVK 400
Query: 462 VKITSVGRWSVFGEVIK 478
V+I G ++GEVI+
Sbjct: 401 VRIAGAGPIYLYGEVIE 417
>gi|30264381|ref|NP_846758.1| hypothetical protein BA_4535 [Bacillus anthracis str. Ames]
gi|47529832|ref|YP_021181.1| hypothetical protein GBAA_4535 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187205|ref|YP_030457.1| hypothetical protein BAS4209 [Bacillus anthracis str. Sterne]
gi|65321683|ref|ZP_00394642.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
gi|165872059|ref|ZP_02216699.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167638687|ref|ZP_02396963.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170707478|ref|ZP_02897932.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177653235|ref|ZP_02935487.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190566951|ref|ZP_03019867.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227817086|ref|YP_002817095.1| MiaB family RNA modification protein [Bacillus anthracis str. CDC
684]
gi|229600003|ref|YP_002868599.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
A0248]
gi|254736415|ref|ZP_05194121.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254750891|ref|ZP_05202930.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Vollum]
gi|254757781|ref|ZP_05209808.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Australia 94]
gi|386738199|ref|YP_006211380.1| MiaB family RNA modification protein [Bacillus anthracis str.
H9401]
gi|421506565|ref|ZP_15953488.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
gi|30259039|gb|AAP28244.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504980|gb|AAT33656.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181132|gb|AAT56508.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164712190|gb|EDR17727.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167513535|gb|EDR88905.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170127722|gb|EDS96595.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|172081517|gb|EDT66589.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190561942|gb|EDV15911.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227006018|gb|ACP15761.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
684]
gi|229264411|gb|ACQ46048.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
A0248]
gi|384388051|gb|AFH85712.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
H9401]
gi|401823558|gb|EJT22705.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
Length = 450
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 222/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKI G + +++L
Sbjct: 417 KLVKVKIMKAGYPYNEAQFVRVL 439
>gi|313681425|ref|YP_004059163.1| tRNA-i(6)a37 thiotransferase enzyme miab [Sulfuricurvum kujiense
DSM 16994]
gi|313154285|gb|ADR32963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfuricurvum kujiense
DSM 16994]
Length = 433
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 219/445 (49%), Gaps = 39/445 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKS-PSQSAMD 115
++ ++++T GC+ N DSE+M +L+A GY LTD++ AD+ LINTC+V+ P
Sbjct: 2 SKKLFIETLGCAMNVRDSEHMIAELNAHEGYELTDDAASADLILINTCSVREKPVHKLFS 61
Query: 116 TL--IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K A + V GC G +K V+ V G + + ++ +V+ + E
Sbjct: 62 ELGVFNKLKKADAKIGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD-RAVE 120
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + + + A R + + + I++GC CT+C RG S + +V V
Sbjct: 121 VEIDYDESQFAF--KDFRSSPYKAYINISIGCDKQCTFCIVPKTRGDEISIPPDLIVAEV 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
R + +G KEV+L ++ YGR +N LL + A + RI T+P
Sbjct: 179 RKAVENGAKEVFLLGQNVNNYGRRFSDVNDKMNFTELLRRVSA-----VEGLERIRFTSP 233
Query: 286 -PFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
PF + E L+E A R+P + +H+P+QSGS +L AM R YT F L EL
Sbjct: 234 HPFHMDDEFLEEFA---RNPKICKSMHMPLQSGSTDILKAMKRGYTKEWFLNRARKLREL 290
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
VP + I+TDII FPGE+D DF T++++KE +F QV ++ PRP T A V V
Sbjct: 291 VPDVSISTDIIVAFPGESDADFEDTLDVMKEVRFEQVFSFKYSPRPLTEAESFTNV---V 347
Query: 403 VKKRSRELTSVFEAFTPYL------GMEGRVERIWITEIAADGIHLGY----VQVLVPST 452
+ S +A+ + G+ G+ ++ E+ +DG G + + V +
Sbjct: 348 DSELGSFRLSTLQAYQDTILDSISAGLLGKEYDVYFEELRSDGYVAGRSDNNIMIKVKGS 407
Query: 453 GNMLGTSALVKITSVGRWSVFGEVI 477
LG A VKIT V R +GE+I
Sbjct: 408 EEWLGKIARVKITEVSRSVQYGEII 432
>gi|163852619|ref|YP_001640662.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens PA1]
gi|229890613|sp|A9VYZ9.1|MIAB_METEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163664224|gb|ABY31591.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
PA1]
Length = 446
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 216/444 (48%), Gaps = 35/444 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY + P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGNGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWIT-------EIAADGIHLGYVQVLVPSTGN 454
+R L + + G + I + ++A HL VQ P++
Sbjct: 359 TERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS-- 416
Query: 455 MLGTSALVKITSVGRWSVFGEVIK 478
+GT V+IT G S+FGE ++
Sbjct: 417 TIGTVVPVRITRAGSNSLFGETLE 440
>gi|435853697|ref|YP_007315016.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
gi|433670108|gb|AGB40923.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
Length = 442
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 224/445 (50%), Gaps = 40/445 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+ DSE +AG L GY D +AD+ ++NTC V+ ++ + + +
Sbjct: 8 FIRTYGCQMNEHDSEKLAGVLKDIGYKPADELAKADVIILNTCCVRENAELKVFGKLGEI 67
Query: 122 KSAKKP---LVVA--GCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 170
K KK L+V GC+ Q + +++ V IV G I R E+++E ++
Sbjct: 68 KQIKKENPGLIVGICGCMMQQEEVVNKIKQRYNFVDIVFGTHNIHRFPELLQEIKAENQS 127
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V + + D+P R + I GC CTYC + RG S + E ++
Sbjct: 128 LVEVWDDSREVIGDMPTNREEDHKAKVNIIHGCDNYCTYCIVPYVRGSERSRSQEDIIKE 187
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAI--VAELPPDGSTMLRIGMTNP 285
++ ++ADGVKEV L ++ +YG+D+G +L LL A+ + LP +R ++P
Sbjct: 188 IKKLVADGVKEVMLLGQNVNSYGKDLGQDLDFADLLTAVNKIKGLP-----RIRFMTSHP 242
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ L E L + C + H+P+QSGSD +L MNR YT ++ +V L P
Sbjct: 243 RDFSDKLIEAVTNLENVCEH--FHLPIQSGSDKLLKKMNRGYTKEEYLDLVTKLKAKNPK 300
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
I+TD+I GFPGET+EDF +T+ L K+ +F + + R GTPAA+M ++VP K
Sbjct: 301 AAISTDLIVGFPGETEEDFAETMELYKQVRFDRAFTFIYSKRTGTPAAKMEEQVPEEKKK 360
Query: 405 KRSRELTSVFEAFTPYLGM-EGRVERIWITEIAADGIHL-------GYVQ----VLVPST 452
+R + L + +G+ E + + I E+ DG G + V++ S
Sbjct: 361 ERHQRLLDL----QSKIGLEENKKLKGEIVEVLVDGPSKKDPNKLSGRTRTDKIVIIESD 416
Query: 453 GNMLGTSALVKITSVGRWSVFGEVI 477
++ G VKI W++FG+++
Sbjct: 417 QDLTGEIINVKINKAQSWTLFGKIV 441
>gi|373494777|ref|ZP_09585376.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium infirmum
F0142]
gi|371967821|gb|EHO85289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium infirmum
F0142]
Length = 438
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 219/442 (49%), Gaps = 27/442 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ T ++ TFGC N+ DSE + G L+ G++ ++A I +INTC+V+ +
Sbjct: 2 SRTFHITTFGCQMNEHDSEIIDGLLTERGFSSVKERKDASIVIINTCSVRDNADKRFFGT 61
Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLK 167
+ + K K+ + V GC+ Q R + ++ I G I + E++E+
Sbjct: 62 LGQLKKRKESDPSFIVCVCGCMMQQQRVVDIIKAKYPWVDVIFGTNSIHHIPELIEKVSM 121
Query: 168 GHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E V ++ + LP R ++ I GC CTYC + RG S E+
Sbjct: 122 EKEKLVDIIENTEEIVEGLPAKRLFNHKALVNIMFGCNNFCTYCIVPYTRGREKSRRPEA 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
++ VR ++ DGVKE+ L ++ +Y D G + LL ++ E+ DG +R +NP
Sbjct: 182 ILAEVRELVEDGVKEIMLLGQNVNSYDGD-GTSFAELL-KMINEI--DGLERIRFMTSNP 237
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + L E V C LH+P+QSGS+ VL MNR+YT D+ +++ L VP
Sbjct: 238 KDLSDELIEAFTVCDKLC--HNLHLPIQSGSNRVLKRMNRKYTREDYLKLIEKLRIRVPD 295
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ ++TDII GFPGETD+DF +T++L+KE ++ + R GTPA + +V +
Sbjct: 296 ITLSTDIIVGFPGETDDDFEETLSLVKEVEYDSAFTFIYSIRKGTPAEKFDNQVEESEKH 355
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNML 456
+R L S + + R+E+I + ++ + G G+ V +M+
Sbjct: 356 RRFDLLVSTVNEISEKKNKVYQDRIEKILVDGVSKNNKLMLTGRTDGFKLVNFAGKKDMI 415
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
G+ V+IT V +S+ GEVI+
Sbjct: 416 GSLVDVRITDVKTFSLLGEVIE 437
>gi|312111583|ref|YP_003989899.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
gi|336235965|ref|YP_004588581.1| MiaB family RNA modification protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720511|ref|ZP_17694693.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
gi|335362820|gb|AEH48500.1| RNA modification enzyme, MiaB family [Geobacillus
thermoglucosidasius C56-YS93]
gi|383366566|gb|EID43856.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
Length = 523
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 219/439 (49%), Gaps = 24/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKQLKQDNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPHILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVIENLPKARKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KEV L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRHLAAQGYKEVTLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII GFP ET+E F +T++L +E +F + + PR GTPAA+M VP V K+R
Sbjct: 379 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDNVPMEVKKERL 438
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
L ++ + EG+V + + + + + GY + LV G + +G
Sbjct: 439 HRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNFIGPKSAIGKL 498
Query: 460 ALVKITSVGRWSVFGEVIK 478
V+IT W++ GE+++
Sbjct: 499 VKVRITEAKTWTLNGEMVE 517
>gi|284048079|ref|YP_003398418.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 437
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/442 (31%), Positives = 218/442 (49%), Gaps = 33/442 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQSD+ M G+ + D E ADI LINTC V + QS +I +
Sbjct: 4 IAFYTLGCKVNQSDTASMEKLFRDAGFQIVDFEEPADICLINTCVVTNMGQSKSRKIIHR 63
Query: 121 C-KSAKKPL-VVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETL----KGHEVR 172
+ KPL VV GC PQ S D + ++GV I+G Q +VVE+V E L +
Sbjct: 64 AARRDPKPLIVVTGCYPQTSPDEVVHIDGVDLIIGNQDRSKVVELVRERLGESPDEAPIN 123
Query: 173 LLHR----KKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+H ++ LD RN+ L I GC C YC +ARGHL S +++++
Sbjct: 124 AVHDLPVGREFEELDAAVDASRNR--AFLKIQEGCDQYCAYCIIPYARGHLRSRSLDNIR 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST-MLRIGMTNPP 286
V + A+ KE+ L G YG++I P L +A+ A L + LR+G
Sbjct: 182 EEVAKLTAEQYKEIVLIGIHLGCYGKEIPGG-PHLSDAVKAALSAEPQVPRLRLGSLESV 240
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + L ++ + R P + + LH+P+Q+G D+ L+ M+R Y + F +++ + LVP +
Sbjct: 241 EVEDALLDL--MAREPRLCAHLHLPLQAGCDSTLARMHRPYDTAKFAQLLEKIRSLVPNV 298
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
I TD+I GFPGET+EDF +++ I++ +F ++HI + R GTPAA M P + +
Sbjct: 299 AITTDVIVGFPGETEEDFQASLDFIRQCRFSKIHIFPYSQRKGTPAAVM---PDQISNQE 355
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWITEIAA-----------DGIHLGYVQVLVPSTGNM 455
+E E + R E+I +G+ GYV+V S NM
Sbjct: 356 KQERVHRLEEVDREGNLAYRKEQIGQESTVLWERRNKNNGLWEGLTPGYVRVYADSPENM 415
Query: 456 LGTSALVKITSVGRWSVFGEVI 477
G + V++ ++ + G +I
Sbjct: 416 KGKISAVRLENLFEDGLKGGII 437
>gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 437
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 209/448 (46%), Gaps = 55/448 (12%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GY T+ + +AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNVADAERMEGQLQAAGYVRTEKTADADVILINTCCVRETAEDKVYGKIGEIKKVK 69
Query: 126 KP-----LVVAGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVE--------VVEETL 166
+ + GC+ Q G ++ + V VQ++ R+V VV+ L
Sbjct: 70 EHHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAAERAPVVDVAL 129
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H V DLP R +PI GC CTYC + RG S T E +
Sbjct: 130 DAHAVEE---------DLPIARGGTLSAWVPIMYGCNNYCTYCIVPYVRGRERSRTPEEV 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V VR ADG +EV L ++ +YG+D G + LL + A +G +R ++P
Sbjct: 181 VAEVRRAAADGYREVTLLGQNVNSYGKDHGQADFADLLRMVDA---VEGIRRVRFMTSHP 237
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
I + L + + H C +H+PVQ GS+ +L AMNR YT+ +R + E +PG
Sbjct: 238 KDISDKLIDTIKNGTHIC--EHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVREALPG 295
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ TD+I GFPGET+EDF +T++ ++E ++ + + R GTPAA M +VP V
Sbjct: 296 ASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPDEVKH 355
Query: 405 KR-----------SRELTSVFEAFTPYLGMEGRVER---IWITEIAADGIHLGYVQVLVP 450
R SR + + + +EG + +W + I VL P
Sbjct: 356 ARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKI------VLFP 409
Query: 451 STGNMLGTSALVKITSVGRWSVFGEVIK 478
+G VKIT W + GEV++
Sbjct: 410 HGAERVGDFVQVKITQPQTWVLKGEVVR 437
>gi|260892471|ref|YP_003238568.1| MiaB family RNA modification protein [Ammonifex degensii KC4]
gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
Length = 447
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 190/369 (51%), Gaps = 16/369 (4%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+ DSE MAG + GY + EEAD+ L+NTC V+ +++ + L+
Sbjct: 11 YIFTYGCQMNEWDSEVMAGLVEEMGYTRAGSPEEADLILLNTCCVRESAENKVWGLLGSL 70
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
K+ L V GC+PQ E++ IVG + ++ E +G V
Sbjct: 71 GRLKQRRPWLLLGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEAERGQVV 130
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ ++ LP R ++ +PI GC CTYC + RG S E ++ V+
Sbjct: 131 AVSPEEQEIVEGLPIRRESRLRAWVPIMFGCNNFCTYCIVPYVRGKERSRRPEDILREVK 190
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE 290
+ +G +E++L ++ AYG+ G+ P+ ++ +L +G +R ++P E
Sbjct: 191 ELAKEGYREIFLLGQNVNAYGK--GLQPPVTFADLLRQLNAVEGIWRIRYTTSHPRDFGE 248
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L I V P V H+PVQ+GSD +L M R YT D+ +V + E++P +T
Sbjct: 249 DL--IRAVAELPKVCENFHLPVQAGSDKILRRMGRGYTRQDYLNLVRRIREVLPQASFST 306
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
DI+ GFPGET+EDF QT+ L++E F Q I + PRPGTPAA +VP V +R +
Sbjct: 307 DIMVGFPGETEEDFEQTLLLVREVGFDQAFIFIYNPRPGTPAASFPDQVPHEVKVERIKR 366
Query: 410 LTSVFEAFT 418
L ++ +A +
Sbjct: 367 LLALQQAIS 375
>gi|452990394|emb|CCQ98409.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Clostridium ultunense Esp]
Length = 443
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 218/435 (50%), Gaps = 32/435 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D EEAD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNFYETEAIWQLFKNKGYTQVDFEEEADVYVINTCTVTNTGDKKSRQMIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ K+ + V GC Q S + E+ GV IV G Q DR+++ VEE
Sbjct: 63 RAIRKNPNAVVAVTGCYAQTSPAKVLEIPGVDIVIGTQGRDRLLDYVEEYKNSRMPINAV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ +K+ L +P K L I GC CT+C A+G S ES++ +
Sbjct: 123 ANIMKQKEFEELSVPTFS-EKTRAFLKIQEGCNNFCTFCIIPWAKGLSRSRQPESVLQQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
RT+ A+G +E+ L+ TG YG D+ +LP LL + E+ +G +RI I
Sbjct: 182 RTLAANGYREIVLTGIHTGGYGEDLEDYSLPRLLMDL-KEI--EGLHRIRISSIEASQIG 238
Query: 290 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E E+ EV R+ P + LH+P+Q+G D +L +M+R+YT + ++ ++ + E +P + I
Sbjct: 239 E---EMIEVFRNNPKMCRHLHIPLQAGDDTILKSMHRKYTTAQYKEKIEKIKEALPHVAI 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TD+I GFPGET+E F T + I+E F ++H+ + R GTPAAR +VP V K+R
Sbjct: 296 TTDVIVGFPGETEEMFQNTYDYIREIGFAELHVFPYSKRTGTPAARFPNQVPEEVKKERV 355
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTS-ALVKI 464
L + T EG V + I E DG P +G ++G S ++I
Sbjct: 356 DRLLELNRELTLRYAKKFEGEVLEV-IPEEYYDGD---------PKSGKVVGYSDNYLRI 405
Query: 465 TSVGRWSVFGEVIKI 479
+G +FG+V ++
Sbjct: 406 AFMGSRDLFGKVCRV 420
>gi|149184079|ref|ZP_01862427.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
gi|148848213|gb|EDL62515.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
Length = 445
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 226/449 (50%), Gaps = 36/449 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + AD+++INTCTV + +I
Sbjct: 6 TVAFHTLGCKVNHYETEAIWQLFKEQGYERLEYENTADVYVINTCTVTNTGDKKSRQVIR 65
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 66 RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRRKMLEYIEQFKEERQPINGV 125
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + L +P ++ L I GC CT+C ARG + S E ++ +
Sbjct: 126 GNIMKNRVYEELQVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSREPEEVIRQA 184
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL +LL + E DG +RI +
Sbjct: 185 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDL--EEKVDGLKRIRISSIEASQLT 242
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L + +PG
Sbjct: 243 DEVIEVIDNSKLVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLEKLKKALPG 296
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + +D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ +
Sbjct: 297 LAVTSDVIVGFPGETEEEFKETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQIDEEIKN 356
Query: 405 KR-------SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTG 453
+R S +L + + Y +E E ++ E G+++G Y++V+ P+T
Sbjct: 357 ERVHRLIELSNQLAKEYASQFEYEVLEVIPEEVY-KEQPDSGLYVGYTDNYLKVVFPATE 415
Query: 454 NMLGTSALVKITSVGRWSVFGEVIKILNQ 482
+M+G VK+T G G+ +++L +
Sbjct: 416 DMVGKLVKVKLTKAGYPFNEGQFVRVLEE 444
>gi|410456793|ref|ZP_11310649.1| ribosomal protein S12 methylthiotransferase [Bacillus bataviensis
LMG 21833]
gi|409927550|gb|EKN64683.1| ribosomal protein S12 methylthiotransferase [Bacillus bataviensis
LMG 21833]
Length = 457
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 225/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D +D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQEGYERVDFEAISDVYIINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV +V G Q ++++ +E+ +
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEIMAIPGVDVVVGTQDRVKMLDYIEQYKTERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL +LL + A + G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLALLLRDLEAGVR--GLERLRISSIEASQIT 239
Query: 290 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EV++H V LH+P+QSGSD+VL M R+YT+ F ++ L E++PG+ +
Sbjct: 240 D---EVIEVIKHSNIVVRHLHIPIQSGSDSVLKRMRRKYTMEFFGERLERLKEVLPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IK++KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKDHKFSELHVFPYSKRTGTPAARMEDQVDEEVKNERV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLG----YVQVLVPSTGNMLG 457
L S+ + +G V + E + G ++G Y++V+ P+T +M+G
Sbjct: 357 HRLISLSDQLAKEYASLFDGEVLEVIPEEEYKEEPNSGKYVGYTDNYLKVVFPATEDMVG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G G+ ++++
Sbjct: 417 KIVKVKITKAGYPFNEGQFVRVV 439
>gi|218905447|ref|YP_002453281.1| MiaB family RNA modification protein [Bacillus cereus AH820]
gi|218535522|gb|ACK87920.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
Length = 450
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 222/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRXERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|383753488|ref|YP_005432391.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365540|dbj|BAL82368.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 432
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 213/434 (49%), Gaps = 35/434 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ ++E M G GY + E+AD ++INTC+V S +I +
Sbjct: 4 VALTTLGCKVNQFETETMEGLFKKSGYDIVPFEEKADFYVINTCSVTSLGDRKSRQIIRR 63
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--------G 168
+ + ++A GC Q ++K +EGV +V G ++ R+VE VE+ + G
Sbjct: 64 AQRTNENAIIAVCGCYSQVHPEEIKAIEGVRVVLGTKERSRIVEYVEQAAREDGILDEVG 123
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + + +P D+P+ R L I GC C+YC +ARG + S ++ +
Sbjct: 124 NIMEAHEFEDIPIYDMPQRTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRHLDKIHS 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP--- 285
+ ++ G KE+ L+ GAYG+D+ + L +A L +G LR+G
Sbjct: 180 EAKKLVDAGFKEIVLTGIHLGAYGKDLDGEV-TLADACREVLKVEGLKRLRLGSLESIEL 238
Query: 286 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + ++E H LH+P+Q+GSDAVL MNR Y ++F +++ + VP
Sbjct: 239 SPDLFALIREDDRFCAH------LHLPLQAGSDAVLKDMNRHYDTAEFGRLIEQVEREVP 292
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
G+ ++TDII GFPGET+E F ++ +++ F ++H+ + R GTPAA R ++P V
Sbjct: 293 GVAVSTDIIVGFPGETEEQFTDSLKFVEKMNFSRMHVFPYSKRSGTPAAERKDQIPDPVK 352
Query: 404 KKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLV--PSTGNML 456
K R++ + + E +LG +V + DG+ Y++V P T +
Sbjct: 353 KDRAKRMQELANRKTEEFHQHFLGQTKQVLFETNNDGVTDGLTDNYIRVYTDSPVTCGEI 412
Query: 457 GTSALVKITSVGRW 470
L ++ G W
Sbjct: 413 YQVKLERLYQDGVW 426
>gi|383639215|ref|ZP_09951621.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
chartreusis NRRL 12338]
Length = 507
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 197/386 (51%), Gaps = 29/386 (7%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEEADIWLINTCTVKSPS 110
S + GT T ++T+GC N DSE +AG L GY + ++EAD+ + NTC V+ +
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGADEADVVVFNTCAVRENA 66
Query: 111 QSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVV 162
+ + + + A +P + V GC+ Q RD +K+ V +V G I ++ ++
Sbjct: 67 DNKLYGNLGHLAPQKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLL 126
Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 ERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKD 186
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTML 278
++ + ++A+GV E+ L ++ AYG DIG LL A ++
Sbjct: 187 RRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GKIESLE 241
Query: 279 RIGMTNPPFILEHLKE-----IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
R+ T+P H ++ IA + P V LH+P+QSGSD VL AM R Y +
Sbjct: 242 RVRFTSP-----HPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYL 296
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
+++ + +P I+TDII GFPGETDEDF QT+++++E +F Q Q+ RPGTPAA
Sbjct: 297 GIIEKVRAAIPHAAISTDIIVGFPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAA 356
Query: 394 RMK-KVPSAVVKKRSRELTSVFEAFT 418
M ++P VV++R L ++ E +
Sbjct: 357 EMDGQIPKKVVQERYERLVALQEEIS 382
>gi|269797930|ref|YP_003311830.1| MiaB family RNA modification protein [Veillonella parvula DSM 2008]
gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
Length = 437
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 223/449 (49%), Gaps = 42/449 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + TDII GFPGET++DF T+ L+K+ ++ + + R GTPAA M ++P + +
Sbjct: 295 VVVTTDIIVGFPGETEDDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354
Query: 405 KRSRELTSVFEAFTPYLG--MEGRV------------ERIWITEIAADGIHLGYVQVLVP 450
R + L V + L MEG+V E +W + + + VL P
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKM------VLFP 408
Query: 451 STGNM-LGTSALVKITSVGRWSVFGEVIK 478
++ +G + I W +G ++K
Sbjct: 409 KDDSLSIGQTVPAHIDKAQTWVCYGSILK 437
>gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8802]
gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802]
Length = 446
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 135/449 (30%), Positives = 222/449 (49%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 69 AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC C+YC + RG S T E+++ +
Sbjct: 129 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KEV L ++ AYGRD+ G + L + + G +R ++P
Sbjct: 187 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + L C + H+P QSG + +L AM R YT +R ++D + + +P
Sbjct: 247 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
I+ D I GFPGET+E F T+NL+++ F Q++ + + PRPGTPAA S VK
Sbjct: 305 ASISADAIVGFPGETEEQFENTLNLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKS 364
Query: 406 -RSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
R + L + E YL GR+E + + D QV+ + GN L
Sbjct: 365 DRLQRLNHLVAQKAAERSQRYL---GRIEEVLV----EDQNPKDSTQVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
G VKIT V +S+ GE++
Sbjct: 418 KGDINQLKGRLIKVKITEVRAFSLTGEIV 446
>gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|448294994|ref|ZP_21485069.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
gi|445585294|gb|ELY39590.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
Length = 414
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 190/362 (52%), Gaps = 39/362 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ EAD+ ++NTCTV +++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRAAGPAEADVAILNTCTVVEKTETNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L+V GC+ L + E S V + R++H ++P
Sbjct: 65 EEETTDLIVTGCMA-----LAQSEAFSDV-------------------DARVMHWDEVPQ 100
Query: 182 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L P V V ILPI GC+ C+YC TKHA G + S T+E+ V + R
Sbjct: 101 AALNGECPTPGPGVEPVLEGVVGILPIARGCMSNCSYCITKHATGRVDSPTIEANVEKAR 160
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ ++ +DTG YG D G +LP LL+ I A +G +R+GM NP I
Sbjct: 161 ALVHAGAKELRITGQDTGVYGWDDGERSLPELLSRICA---IEGEFRVRLGMANPGGIHG 217
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+E+AEV + +Y F+H PVQSGSD VL M R++ + FR +V T + ++
Sbjct: 218 IHEELAEVFAENEKLYDFIHAPVQSGSDEVLEEMRRQHKVEKFREIVKTFDRELDHWTLS 277
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
TD I GFP ET+ D +++L++E + +V++++F RP T AA MK + + K+RS+
Sbjct: 278 TDFIVGFPTETEADHELSMDLLREIRPEKVNVTRFSKRPKTDAADMKGLGGTIKKERSKA 337
Query: 410 LT 411
++
Sbjct: 338 MS 339
>gi|86609143|ref|YP_477905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-2-3B'a(2-13)]
gi|123502140|sp|Q2JKY0.1|MIAB_SYNJB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86557685|gb|ABD02642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 444
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 185/346 (53%), Gaps = 19/346 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T Y TFGC N++D+E MAG L + GY T++ +AD+ L NTCT++ ++ + + +
Sbjct: 5 TYYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVYSYLG 64
Query: 120 -----KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
K K+ L+VAGCV Q G + L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATDPVEIPE-DITKPRRDSQVTAW-INVIYGCNERCTYCIVPRVRGQEQSRQPQAIRAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L I P V H+P Q+GS+ VL M R YT +R ++ + + +P
Sbjct: 240 FTEEL--ITTCAELPKVCEHFHIPFQAGSNEVLKRMRRGYTHERYRQIIQLIRQYMPEAA 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
I+ D I GFPGET+ F +T+ L+++ F QV+ + + PRPGTPAA
Sbjct: 298 ISADAIVGFPGETEAQFQETLQLVQDIGFDQVNTAAYSPRPGTPAA 343
>gi|302558013|ref|ZP_07310355.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
Tu4000]
gi|302475631|gb|EFL38724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
Tu4000]
Length = 505
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 193/380 (50%), Gaps = 16/380 (4%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
S + GT T ++T+GC N DSE ++G L GY A + +AD+ + NTC V+
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVREN 66
Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
+ + + + K A +P + V GC+ Q RD +K V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126
Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
++ + ++A+GV E+ L ++ AYG DIG + + A DG +R
Sbjct: 187 DRRTGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIDGLERVR 245
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+P + + IA + P V LH+P+QSGSD VL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 399 PSAVVKKRSRELTSVFEAFT 418
P VV++R L + EA +
Sbjct: 364 PKKVVQERYERLVELQEAIS 383
>gi|435845798|ref|YP_007308048.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
gi|433672066|gb|AGB36258.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
Length = 420
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 207/405 (51%), Gaps = 30/405 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC + QG +E + G V D V E V E
Sbjct: 65 ADETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +E V + ++ G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+ ++ +DTG YG D G L + EL +G +R+GM NP + +E+A V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLEEICEL--EGEFRVRVGMANPKGVHGIREELASV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDQLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 412
ETD D Q++ L++E + ++++++F RPGT AA+MK + + K+RS+E+++
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAKMKGLGGTIKKERSKEMSAAKREL 347
Query: 413 VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGN 454
V EA+ +G E R + + + AD + Y Q++V + +
Sbjct: 348 VGEAYESMVG-EVREDVLVVEHGTADSVKCRDSAYRQLIVQNASD 391
>gi|402817481|ref|ZP_10867069.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
gi|402505003|gb|EJW15530.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
Length = 442
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 202/375 (53%), Gaps = 30/375 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
TE I + T GC N DSE M+G + GY L +N E+A + ++NTC + + + +++T
Sbjct: 2 TEKIKIVTLGCDKNLVDSEIMSGLIYERGYELVENEEDATVIIVNTCGFIDAAKEESVNT 61
Query: 117 LIA----KCKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLK 167
++ K + K L+V+GC+ Q ++ + E++G IVG D++ ++V+E L+
Sbjct: 62 ILRLADLKETAELKALIVSGCLTQRYKEQLLDEMPEIDG--IVGTGDFDKINDIVDEALQ 119
Query: 168 GHE-VRLLHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
G + +R+ + P D LP KV ++ + I GC CT+C RG S
Sbjct: 120 GSKPIRVGN----PVFDYDRILPRKVATPRYTAYVKIAEGCDNNCTFCSIPIMRGKFRSR 175
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
T+ES++ V + GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R
Sbjct: 176 TMESILAEVAQLAEQGVKEISLIAQDSTNYGVDLYDGFKLPELMNK-VSEIP--GVEWVR 232
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+ P F E L + + +P + ++ +P+Q D++L M R D R +V+ +
Sbjct: 233 LHYAYPGFFTEELMDT--IASNPKICKYIDMPLQHSEDSILKRMRRPGRQRDSRELVNKI 290
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKV 398
E +PG+ + T II GFPGETDEDF++ + I+E KF ++ + + TPA R+ V
Sbjct: 291 RERIPGVALRTSIIVGFPGETDEDFDRLCDFIREMKFDRLGVFTYSSEEDTPATRLPDHV 350
Query: 399 PSAVVKKRSRELTSV 413
P V + R+ L +
Sbjct: 351 PDEVKEWRANTLMEI 365
>gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|352685015|ref|YP_004897000.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|350279670|gb|AEQ22860.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
Length = 435
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 211/446 (47%), Gaps = 46/446 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+I T GC NQSD+ M GY + E +DI LINTC V + Q +I
Sbjct: 4 SISFYTLGCKVNQSDTASMEKLFREAGYEIVPFGEASDICLINTCVVTNMGQGKSRRMIR 63
Query: 120 KC-KSAKKPL-VVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLH 175
+ K KPL VV GC PQ + ++ LEGV + VG + R+VE+VEE RL
Sbjct: 64 RTIKRDPKPLIVVTGCYPQTAPEEVAALEGVDLLVGNRDRARIVELVEE-------RLGE 116
Query: 176 RKKLPA---LDLP----------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
R P LDLP V ++ L I GC C+YC +ARGHL S
Sbjct: 117 RDAAPVNDVLDLPVGSEFEDLAASVDDSRDRAFLKIQEGCDQYCSYCIIPYARGHLRSRP 176
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ S+ V + +G KEV L G YG++ N L +A+ A L LR+G
Sbjct: 177 LSSIRREVEHLTEEGYKEVVLLGIHLGCYGKETA-NGERLSDAVSAALSVPALCRLRLGS 235
Query: 283 TNPPFILEHLKEIAEVLR----HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
LE ++ E+LR P LH+P+QSG D +L AMNR Y + F+ ++D
Sbjct: 236 ------LESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNRPYDTARFKELIDR 289
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
+ VP + I TDII GFPGET+ DF QT+ + F ++HI + R GTPAA K
Sbjct: 290 IRAAVPDVAITTDIIVGFPGETEADFAQTLTFAEACGFAKIHIFPYSKRKGTPAAERKDQ 349
Query: 399 PSAVVKK-RSRELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLV 449
S K+ R L +V E F L GR + +I G+ G YV+V +
Sbjct: 350 LSNKEKEDRVHRLEAVDRKGNEIFRKTLI--GRQYPVLWEQIGRKGLWEGLTPNYVRVYL 407
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGE 475
S ++ GT V +T + V E
Sbjct: 408 KSEEDLTGTLTTVAVTGLFDDGVLAE 433
>gi|302335738|ref|YP_003800945.1| MiaB family RNA modification protein [Olsenella uli DSM 7084]
gi|301319578|gb|ADK68065.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
Length = 455
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 215/449 (47%), Gaps = 39/449 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD--- 115
+T +++TFGC N DSE +AG L G +EADI + TC+V+ + + +
Sbjct: 10 KTYFVRTFGCQMNLHDSERVAGLLDDCGCVAVQGPDEADIVVFMTCSVREKADTHLFGEA 69
Query: 116 ---TLIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRV----VEVVEET 165
+ + S ++ + V GC+ Q G R + + V +V G + V VE +EE
Sbjct: 70 SNLVRLPRPPSGRRVVAVGGCIAQRDGDRLREHIPNVDVVFGTSALASVPALLVEALEEG 129
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
V + + +LP R F +PI GC CTYC H RG S E
Sbjct: 130 GGRVHVDTSEEGRGFSAELPSHREQDFHAWVPIMTGCDNFCTYCIVPHVRGRERSRAFER 189
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+V ++ADGV+E+ L ++ +YGRD+ LL A+ G +R +
Sbjct: 190 VVDECARLVADGVREITLLGQNVNSYGRDLYGEPRFAELLQAV----GETGVERIRFTSS 245
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
NP + + IA + P V LH+ VQSGS +L AMNR YT + V+ + +
Sbjct: 246 NPKDL--SAETIAAMAGTPNVMPHLHLAVQSGSTRILKAMNRSYTREGYLDVIRDIKAAI 303
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
PG+ ++TDII GFPGET+EDF T++L++E F + + RPGTPAAR+ P V
Sbjct: 304 PGIALSTDIIVGFPGETEEDFLDTLSLVEEVGFASAYTFIYSRRPGTPAARITDDTPREV 363
Query: 403 VKKRSRELTSV-----FEAFTPYLGMEGRVER-IWITEIAADGIHLGY------VQVLVP 450
++ R L S+ EA PY G RVE I D + +G+ V + +P
Sbjct: 364 IQGRFDRLASLVERLAHEANVPYQG--SRVEALIEGASKKDDRVLVGHSPHNQTVLLDLP 421
Query: 451 S---TGNMLGTSALVKITSVGRWSVFGEV 476
G+ +GT V +T W + GE+
Sbjct: 422 EGSHAGDFVGTLCDVHVTEARTWYLRGEL 450
>gi|423457441|ref|ZP_17434238.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X2-1]
gi|401147825|gb|EJQ55318.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X2-1]
Length = 450
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 222/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ +VL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIKVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E G+++G Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|221065180|ref|ZP_03541285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
KF-1]
gi|220710203|gb|EED65571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
KF-1]
Length = 442
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 223/452 (49%), Gaps = 46/452 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS+ MA L +A GY T N +EAD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + + K+ V V GCV +G+ +K V +V G Q + R+ E++ +
Sbjct: 62 DLGRIRHLKEKGVLIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQRAA--- 118
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINV-----------GCLGACTYCKTKHARGHLG 219
K P +D+ KF + P V GC C+YC + RG
Sbjct: 119 ------KAKPQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEV 172
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDG 274
S E ++ V + GVKE+ L ++ AY +G + +LL VAE+P G
Sbjct: 173 SRPFEDVLVEVAGLAEQGVKEITLLGQNVNAYLGKMGDTSEMADFALLLE-YVAEIP--G 229
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
+R ++P L I R P + S LH+PVQ GSD +L AM R YT ++++
Sbjct: 230 IERIRYTTSHPNEFTPRL--IEAYARIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKS 287
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
+ L + P + +++D I GFPGET+EDF + + LI + +F F PRPGTPAA
Sbjct: 288 TIRKLRAIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAAN 347
Query: 395 MK-KVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHL---GYVQV 447
+ P V +R +EL +V + + E G V+R+ I ++ DG L Y
Sbjct: 348 LHDDTPHEVKLRRLQELQAVINSHIKEISEERVGTVQRLLIEGVSKRDGSELMGRTYCNR 407
Query: 448 LV--PSTGNMLGTSALVKITSVGRWSVFGEVI 477
+V P ++G VKIT +++ GEV+
Sbjct: 408 VVNFPGNARLIGQMVDVKITEAKAYTLRGEVL 439
>gi|427723965|ref|YP_007071242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
7376]
gi|427355685|gb|AFY38408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
7376]
Length = 451
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 145/452 (32%), Positives = 222/452 (49%), Gaps = 44/452 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY ++ EAD+ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEGMGYLFAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G L+ + V I+G Q +R+ E++E+ G ++
Sbjct: 68 AKRKHSKPDLTLIVAGCVAQQEGESLLRRVPEVDLIMGPQHANRLQELLEQVDSGSQIVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 128 TEPIHI-VEDITKPRRDSSVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIYAEME 185
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILLNAIVAELPPDGSTMLRIGM 282
+ G KEV L ++ AYGRD+ NL LL V ++P G +R
Sbjct: 186 ELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYNLTDLL-YFVHDVP--GIERIRFAT 242
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
++P + E L + L P + H+P QSG + VL AM R YT +R ++D + +
Sbjct: 243 SHPRYFTERLIKACHEL--PKICEHFHIPFQSGDNDVLKAMRRGYTHEKYRRIIDNVRKY 300
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I FPGET+E F T+ L+++ F Q++ + + PRPGTPAA + S
Sbjct: 301 MPDASISADAIVAFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAAVWEDQLSEE 360
Query: 403 VKK-RSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
VK R + L + +A GRVE + + + QV+ ++GN L
Sbjct: 361 VKSDRLQRLNRLVNQKAAERSERYAGRVEAVLVEGQNPKNPN----QVMGRTSGNRLTFF 416
Query: 457 --------GTSALVKITSVGRWSVFGEVIKIL 480
GT V+IT V +S+ GE I+ L
Sbjct: 417 EGDINELKGTIVSVRITEVRPFSLTGEPIEAL 448
>gi|427727572|ref|YP_007073809.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
gi|427363491|gb|AFY46212.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
Length = 454
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 222/452 (49%), Gaps = 46/452 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFCEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRTEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L + + V ++P G LR +
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRHY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+ F T+ L+ + F Q++ + + PRPGTPAA S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWSNQLSEE 361
Query: 403 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-- 456
VK +R L +V +A +GR+E + + D QV+ + GN L
Sbjct: 362 VKSDRLQRLNHLVNV-KAAERSQRYQGRIEEVLV----EDQNPKDKTQVMGRTRGNRLTF 416
Query: 457 ---------GTSALVKITSVGRWSVFGEVIKI 479
G VKIT V +S+ GE +++
Sbjct: 417 FTGDINELKGQLVKVKITEVRAFSLTGEPVEV 448
>gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus
GD/7]
Length = 454
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 226/444 (50%), Gaps = 30/444 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI+ + GC N DSE M G L A G+ L D+ EADI ++NTC+ + + ++ T++
Sbjct: 10 TIFFVSLGCDKNLVDSEVMLGILRAHGFTLVDDEIEADIIVVNTCSFIHDAKEESIQTIL 69
Query: 119 AKCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEV 171
+ K L+V GC+ + +D + E+E V +++G + EVV E L+G +V
Sbjct: 70 EMAEMKHSCRCKALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLEGQKV 129
Query: 172 RLLHR-KKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + +P +D+ ++ + L I GC CTYC RG S++++ L+ +
Sbjct: 130 KQFDDLQAMPEVDVQRIMTTGGYSSYLKIAEGCDKHCTYCIIPKLRGSYRSHSMDYLIKQ 189
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ A GVKE+ + +++T YG D+ +L + +G + +R+ P I
Sbjct: 190 AESLAAQGVKELNIVAQETTVYGTDLYNGQKMLPELLKRLCRIEGLSWIRVLYCYPEEIN 249
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E L ++ + P + +L +P+Q GSDAVL M R T ++ R+++ L E +P + +
Sbjct: 250 EELIQV--IKEEPKICHYLDLPIQHGSDAVLKRMGRRTTQAELRSIIGRLREEIPDIALR 307
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
T +I GFPGET+ D + + +K+ +F ++ + + GTPAA+M ++ AV + R
Sbjct: 308 TTLIAGFPGETEADHQEALQFVKDMRFDRLGVFTYSEEEGTPAAQMPDQIDEAVKETRRD 367
Query: 409 ELTSVFEAF-----------TPYLGMEGRV--ERIWITEIAADGIHL-GYVQVLVPSTGN 454
L +A T + +EGR+ E ++I D + GY V V + +
Sbjct: 368 ALMMAQQAIAFDKSEEMVGKTVDVLIEGRLPEEDVYIGRTYRDAPDVDGY--VFVHAEED 425
Query: 455 ML-GTSALVKITSVGRWSVFGEVI 477
M+ G VKIT + + G+VI
Sbjct: 426 MISGDIVKVKITDAQDYDLVGDVI 449
>gi|302554591|ref|ZP_07306933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
viridochromogenes DSM 40736]
gi|302472209|gb|EFL35302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
viridochromogenes DSM 40736]
Length = 508
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 194/380 (51%), Gaps = 16/380 (4%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
S + GT T ++T+GC N DSE +AG L GY A + EAD+ + NTC V+
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGEADVVVFNTCAVREN 66
Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
+ + + + K A +P + V GC+ Q RD +K+ V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKAGRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVL 126
Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
++ + ++ADGV E+ L ++ AYG DIG + + A +G +R
Sbjct: 187 DRRPGDILAEIEALVADGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVR 245
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+P + + IA + P V LH+P+QSGSD VL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 399 PSAVVKKRSRELTSVFEAFT 418
P VV++R L ++ E +
Sbjct: 364 PKKVVQERYERLVALQEEIS 383
>gi|448474662|ref|ZP_21602521.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
gi|445817969|gb|EMA67838.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
Length = 439
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 138/425 (32%), Positives = 216/425 (50%), Gaps = 42/425 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ + E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPAEGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVV----EVVEETLKGHEVRL 173
+ + LVV GC + QG + +E E ID + EV L G E
Sbjct: 63 ELAAETSDLVVTGCMALAQGEQ-FREAE---------IDAEILHWDEVPTYALNG-ECPT 111
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ P LD V ILPI GC+ C+YC TK A G + S +VE V + R +
Sbjct: 112 VTPDAEPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARAL 164
Query: 234 IADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I
Sbjct: 165 VHAGAKEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIH 221
Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+E+ V R+ +Y+F+H PVQSGSD VL+ M R++ + FR VV + + ++TD
Sbjct: 222 EELVGVFARNEELYNFIHAPVQSGSDEVLADMRRQHRVDKFREVVAEFDDRLDHWTLSTD 281
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
I GFP ET D ++++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 282 FIVGFPTETAADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMS 341
Query: 412 S-----VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSA 460
V EA+ +G E + + E D + Y Q++V + G +G
Sbjct: 342 ELKMEVVGEAYEAMVGE--TFEALVVEEGTGDSVKCRDGAYRQIIVQNAAERGVAVGDFL 399
Query: 461 LVKIT 465
V++T
Sbjct: 400 TVEVT 404
>gi|414160614|ref|ZP_11416880.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus simulans ACS-120-V-Sch1]
gi|410878134|gb|EKS26023.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus simulans ACS-120-V-Sch1]
Length = 513
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 191/365 (52%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++KT+GC N D+E MAG A GY L D+ +AD+ L+NTC ++ +++ + + I
Sbjct: 68 TFFIKTYGCQMNAHDTEVMAGIFEALGYTLADDMLKADVILLNTCAIRENAENKVFSEIG 127
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K K+ + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHKLPEILEEAYLSK 187
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ + ++ +LPKVR + F + I GC CTYC RG S E ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 247
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + G KE+ L ++ +YG+D+ ++ L + ++ +R ++P
Sbjct: 248 EEVRDLARQGYKEITLLGQNVNSYGKDLQ-DIEYGLGDLFEDIAKIDIPRVRFTTSHPWD 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+H+ E+ + + + +H+PVQSG+DAVL M R+YT + +V+ + +P +
Sbjct: 307 FTDHMIEV--IAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIKAAIPDVA 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAARMK V + V K+R
Sbjct: 365 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAARMKDNVATEVKKER 424
Query: 407 SRELT 411
+ L
Sbjct: 425 LQRLN 429
>gi|331001788|ref|ZP_08325310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330412762|gb|EGG92145.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 475
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 194/365 (53%), Gaps = 21/365 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G LS GY +N E+AD+ L NTCTV+ + + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILSGIGYTEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
K+ + + GC+ Q + ++++++ + G I ++ E++ + T K +
Sbjct: 101 KEKNHDMIVGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLTTKKQIIN 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + LP R+ F + I GC C+YC + RG S E ++ ++T
Sbjct: 161 VMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKT 220
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ADGVKE+ L ++ +YGR + ++ LL I AE+ +G LR +P + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGRGLEEEISFAGLLERI-AEI--EGLERLRFMTPHPKDLSD 277
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ E+ + + C + LH+P+QSGS A+L MNR YT D+ +V + +P + + T
Sbjct: 278 EVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVYTKEDYLNLVKRIKTAIPDISLTT 335
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV--PSAVVKKRSR 408
DII GFPGET+ DF T+ ++KE ++ + R GTPAA+M++ P A+ + R
Sbjct: 336 DIIVGFPGETEGDFLDTLEVVKEVRYDSAFTFIYSKRSGTPAAKMEEQVDPKAIKDRFDR 395
Query: 409 ELTSV 413
L +V
Sbjct: 396 LLKTV 400
>gi|258516358|ref|YP_003192580.1| MiaB family RNA modification protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257780063|gb|ACV63957.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
DSM 771]
Length = 435
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 197/375 (52%), Gaps = 23/375 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++T+ + T GC NQ ++ + + GY+ D +E A +++INTCTV S L
Sbjct: 3 SKTVAVATLGCKVNQYEAAAIVSLFRSKGYSEVDFTEPAGVYVINTCTVTHLSDRKSRQL 62
Query: 118 IAKCKSAKKPLVVA--GCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-- 171
I + V+A GC Q S +L L V +VG D++V++VE + K ++
Sbjct: 63 IRRAVRTNPEAVIAVTGCYAQTSPGELMSLPEVDLVVGTSDRDKIVDLVEASSKAEKINA 122
Query: 172 -----RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ ++LPA + + L I GC C+YC +ARG L S E++
Sbjct: 123 VADIEKACFYEELPA----PAGQGRVRAYLKIQEGCRNFCSYCIIPYARGPLRSRQPEAV 178
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNP 285
+ +++A G KE+ L+ TGAYG D+ L AIV +L G + LR+ P
Sbjct: 179 LNEAESLLAAGFKEIVLTGIQTGAYGVDLPAKTS--LAAIVEKLLRISGLSRLRLSSIEP 236
Query: 286 PFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+ E+ E++ H ++ LH+P+QSGSD VL M R YT + +++ L E +P
Sbjct: 237 N---DLSPELIELILHSKIFCPHLHIPLQSGSDRVLKLMRRRYTTEGYAKILNNLREKMP 293
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
+ + TDI+ GFPGET+EDF Q + IK+ F +H+ ++ PR GTPAA ++V + V
Sbjct: 294 NLAVTTDIMAGFPGETEEDFEQALGFIKDMAFSGMHVFKYSPRRGTPAAGFPQQVDARVK 353
Query: 404 KKRSRELTSVFEAFT 418
++RSR L ++ E T
Sbjct: 354 EQRSRRLIALGEQLT 368
>gi|152976740|ref|YP_001376257.1| RNA modification protein [Bacillus cytotoxicus NVH 391-98]
gi|152025492|gb|ABS23262.1| RNA modification enzyme, MiaB family [Bacillus cytotoxicus NVH
391-98]
Length = 450
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 135/443 (30%), Positives = 223/443 (50%), Gaps = 28/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD++++NTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQSGYERVDFEKTADVYVVNTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ + + V GC Q S ++ + GV IV G Q +++++ +E+ + + V
Sbjct: 63 RAVRHNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLDYIEQYRQERQPINAV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAGLLRDMEAEVK--GLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ ++ L E +PG+ I
Sbjct: 240 D---EVIEVLDKSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLNRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVKNERV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIW----ITEIAADGIHLG----YVQVLVPSTGNMLG 457
L + EG V I E +G+++G Y++V+ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEPFKEGDREGLYVGYTDNYLKVVFEGSEELIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT G G+ +++L
Sbjct: 417 KLVKVKITKAGYPYNEGQFVRVL 439
>gi|428305612|ref|YP_007142437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
gi|428247147|gb|AFZ12927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
Length = 458
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 222/452 (49%), Gaps = 44/452 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ A + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNNAKVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ E++E+ L G++V
Sbjct: 69 AKRKHEEPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKELLEQVLDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVSAW-VNVIYGCNERCTYCVVPSVRGVEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELSHQGYKEITLLGQNIDAYGRDLPGVTKEGRHQHTLTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + L P V H+P QSG + +L AM R YT +R ++DT+ +
Sbjct: 245 HPRYFTERLIQACAEL--PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I D I GFPGET++ F T+ LI++ F V+ + + PRPGTPAA + S V
Sbjct: 303 PDASITADAIVGFPGETEQQFENTLKLIEDISFDLVNTAAYSPRPGTPAAVWDQQLSEQV 362
Query: 404 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
K +R L S+ +A GR+E + + D QV+ + GN L
Sbjct: 363 KSDRLQRINHLVSI-QAAERSQRYFGRIEEVLV----EDQNQKDPTQVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVIKIL 480
G VKIT V +S+ GE + +L
Sbjct: 418 KGSIAQLKGQIVQVKITEVRPFSLTGEPLAVL 449
>gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
Length = 438
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 210/431 (48%), Gaps = 35/431 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +SE M GY D ++AD+++INTCTV + S +I
Sbjct: 4 KTVAFLTLGCKVNTYESEAMLKLFHQAGYEAVDFKDKADVYVINTCTVTNTGDSKSRQMI 63
Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE-------TLK 167
K ++ K + V GC Q S ++ +EGV +V G Q +++V+ V E +K
Sbjct: 64 RKAIRQNEKAIVCVVGCYSQVASEEVVSIEGVGVVLGTQFRNQIVDFVNEYKTTQKPVIK 123
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+V L R LD+ + RN L I GC CTYC +ARG + S T ES++
Sbjct: 124 VADVMKLSR--FEDLDIDEFTRNTRA-FLKIQDGCNNFCTYCIIPYARGQIRSRTPESVL 180
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ ++++ G E+ L+ T YG+D + LL + ++ G LRI
Sbjct: 181 KQAQSLVDHGFVEIVLTGIHTAGYGQDFENYSFYDLLVDLTTKIK--GLKRLRISSIEMS 238
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I + + ++ + P + LH+P+QSG DA L MNR YT ++F + L E +P +
Sbjct: 239 QITQEIIDL--IAMSPIIVDHLHIPIQSGCDATLKRMNRHYTTAEFSDKLRDLKEKLPSL 296
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406
+ TD+I GFPGET+E+F QT I++ F Q+H+ + R GTPAARMK VK
Sbjct: 297 SVTTDVIVGFPGETEEEFQQTYQWIEKMHFNQLHVFPYSIRKGTPAARMKDQIDGHVKHD 356
Query: 407 --------SRELTSVFEAFTPYLGMEGRVERIWITEIAAD---GIHLGYVQVLVPSTGNM 455
S+ L S F ++ G+ + I E D G Y++V V +
Sbjct: 357 RVKSLMDLSQRLQSEFASYQI-----GKTLEVLIEERHGDRMVGHASNYLKVHVDLPDSS 411
Query: 456 LGTSALVKITS 466
+G VKI S
Sbjct: 412 IGHIYRVKILS 422
>gi|160896962|ref|YP_001562544.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Delftia
acidovorans SPH-1]
gi|333916610|ref|YP_004490342.1| MiaB family RNA modification protein [Delftia sp. Cs1-4]
gi|229890511|sp|A9BUQ1.1|MIAB_DELAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160362546|gb|ABX34159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Delftia acidovorans
SPH-1]
gi|333746810|gb|AEF91987.1| RNA modification enzyme, MiaB family [Delftia sp. Cs1-4]
Length = 442
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 223/442 (50%), Gaps = 26/442 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS+ MA L +A GY TD+ E+AD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYESTDDPEQADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + K K+ V V GCV +G +K V +V G Q + R+ E++ H+
Sbjct: 62 DLGRYKHLKERGVLIGVGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLNARAAKHK 121
Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGSSAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLI 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTN 284
V + GVKEV L ++ AY +G I LL V+E+P G +R ++
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGKMGDTAEIADFALLLEYVSEIP--GIERIRYTTSH 239
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P L I R P + S LH+PVQ GSD +L AM R YT ++++ + L + P
Sbjct: 240 PNEFTPRL--IEAYARLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLRAIRP 297
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
M +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P V
Sbjct: 298 EMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHEVK 357
Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHL-GYVQ----VLVPSTGNM 455
+R +EL +V + E G V+R+ + ++ DG L G + V P +
Sbjct: 358 LRRLQELQAVINNNIKDISDERVGTVQRLLVEGLSKRDGSELMGRTECNRVVNFPGNERL 417
Query: 456 LGTSALVKITSVGRWSVFGEVI 477
+G VKIT +++ GEV+
Sbjct: 418 IGQMIDVKITEARTFTLRGEVV 439
>gi|291279773|ref|YP_003496608.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
SSM1]
gi|290754475|dbj|BAI80852.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
SSM1]
Length = 439
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 197/386 (51%), Gaps = 20/386 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++KTFGC N+ DSE +A GY+LTDN EEA +INTC+V+ +++ + +
Sbjct: 3 LFIKTFGCQMNEYDSERIAAIFQERGYSLTDNLEEASFAVINTCSVREKPYHKVESELGR 62
Query: 121 CKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K KK + V GCV Q G + L + V +V G IDR+ +++ KG +
Sbjct: 63 LKKFKKLNPDFKIAVCGCVAQQDGEKFLDRFDYVDLVFGTSAIDRLHSLIDLVEKGERI- 121
Query: 173 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ L +P R K V + I GC C+YC + RG S ++ ++
Sbjct: 122 CDTSEGDDELSIPVFGRGKKVSAFVTIMKGCDNFCSYCIVPYVRGREKSRKPSEILDEIK 181
Query: 232 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ +GVKEV L ++ +YG+ D +N P LL + +G +R ++P
Sbjct: 182 YLVNNGVKEVTLLGQNVNSYGKGLDEDINFPKLLYKV---HDINGLERIRFVTSHPKDFD 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L I + P V +LH+P+Q+GS+ VL MNR+YT ++R V E++P + ++
Sbjct: 239 DEL--IFAIRDLPKVCEYLHLPLQAGSNKVLKMMNRKYTYEEYRDKVLKAKEMIPDLALS 296
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
+D I GFPGET EDF +T+ IKE ++ + ++ PRP T A+ + +R
Sbjct: 297 SDFIVGFPGETVEDFAETLKAIKEIRYESIFAFKYSPRPKTKASNFVDDITDDEKSRRLN 356
Query: 409 ELTSVFEAFTPYLGME--GRVERIWI 432
EL S+ T + G+V+ I +
Sbjct: 357 ELLSIQSKITEEINKSYVGKVQEILV 382
>gi|319649479|ref|ZP_08003635.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
gi|317398641|gb|EFV79323.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
Length = 515
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 135/455 (29%), Positives = 221/455 (48%), Gaps = 40/455 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY T++ E+A++ L+NTC ++ +++ + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFLGLGYEHTESVEDANVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K KK + V GC+ Q ++ LK V ++ G I R+ +++E E
Sbjct: 131 LKHLKKENPDLLIGVCGCMSQEESVVNKILKTYNQVDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVIEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +E+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDFE-DMNYGLGDLMDEMRKIDIPRVRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+YT + +V + +P
Sbjct: 310 DDHLIEV--LAKGGNLVEHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIKAAIPEATF 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII G+P ET+E F +T++L +E F + + PR GTPAA+M VP V K+R
Sbjct: 368 TTDIIVGYPNETEEQFEETISLYREVGFEAAYTFIYSPREGTPAAKMVDNVPMEVKKERL 427
Query: 408 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQ--VLVPSTG 453
+ L +V EA Y G E+ +G I GY + LV G
Sbjct: 428 QRLNAVVNELSAEAMKKYKGQ--------TVEVLVEGESKNNPEILAGYTRKNKLVNFKG 479
Query: 454 --NMLGTSALVKITSVGRWSVFGEVIKILNQVDDK 486
+G VK+T WS+ GE+++ L+ V+ K
Sbjct: 480 PKTAIGKIVNVKVTDAKTWSLNGEMVEELDAVEVK 514
>gi|336253288|ref|YP_004596395.1| MiaB-like tRNA modifying protein [Halopiger xanaduensis SH-6]
gi|335337277|gb|AEH36516.1| MiaB-like tRNA modifying enzyme [Halopiger xanaduensis SH-6]
Length = 417
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 132/404 (32%), Positives = 208/404 (51%), Gaps = 28/404 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEVADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC + QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFRAADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S VE V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSNCSYCITKEATGKIDSPPVEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+AEV
Sbjct: 171 EIRITGQDTGVYGWDTGERKLHELLERICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
H +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 229 AEHDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDDRLDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 413
ET+ D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E++ V
Sbjct: 289 ETEHDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSELKREIV 348
Query: 414 FEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPSTGN 454
+A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 349 ADAYEDMVG-ERREDCLVVEEGTADSVKCRDSAYRQIIVQNASD 391
>gi|150019979|ref|YP_001305333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
melanesiensis BI429]
gi|229891013|sp|A6LJ47.1|MIAB_THEM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|149792500|gb|ABR29948.1| RNA modification enzyme, MiaB family [Thermosipho melanesiensis
BI429]
Length = 430
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 224/436 (51%), Gaps = 25/436 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++KT+GC N++DSE L GY +T+N +ADI ++NTC V+ S+ + I +
Sbjct: 4 IHIKTYGCQMNENDSEVAKFYLEEEGYEITNNENDADIVILNTCVVRKKSEDKFYSHIGE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K + + GC + ++ GV ++G + I + + VE + G + + K+
Sbjct: 64 LKKQNKIIGIMGCGAEKEKEKLFKRGVKFVIGTRAIPLIPQAVERAINGKKSAIFE-DKM 122
Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+D K+ R +K + I GC CTYC + RG S ++ ++ V + G
Sbjct: 123 DEIDYKKILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDIINEVENLAKSG 182
Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI-GMTNPP--FILEHL 292
+KEV ++ AYG+D+ G +L LLN L D + RI +T+ P F L+
Sbjct: 183 IKEVTYLGQNVDAYGKDLNDGSSLAKLLN-----LTKDIEEIERIWFLTSYPTDFSLDIA 237
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+A + + +H+PVQ GS+ +L MNR YT+ ++ +++ + ++VP I++DI
Sbjct: 238 HEVANSSK---ITKNIHLPVQHGSNKILKKMNRRYTIEEYIELINDIRKIVPDASISSDI 294
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKRSREL 410
I GFP ET+EDF +TV L+K KF +++++ + PR GT A + VP + KR +
Sbjct: 295 IVGFPDETEEDFEKTVELVKNIKFERLNLAIYSPREGTIAWKYFEDNVPRIIKTKRMAYI 354
Query: 411 TSVFEAFTPYLGME--GRVERIWITEIAADGIHLG--YVQVLVPSTGN--MLGTSALVKI 464
++ + L + I + A G++ G ++ G+ ++G LVK+
Sbjct: 355 LNLQKEINKQLNENYLNKTVEIIVETKAKSGLYYGRDIRNKIIAFEGDKSLIGKKVLVKV 414
Query: 465 TSVGRWSVFGEVIKIL 480
++G++IKIL
Sbjct: 415 KKTTAGPLYGDIIKIL 430
>gi|448732069|ref|ZP_21714352.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
gi|445805347|gb|EMA55570.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
Length = 414
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 222/431 (51%), Gaps = 32/431 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV +++ M +
Sbjct: 3 SYHLETYGCTANRGESRAIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLSRAR 62
Query: 120 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ +S LVV GC + QG + +L+ ++ G ++ VV L G E
Sbjct: 63 ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTATPG 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S VE V + R ++ G
Sbjct: 114 TEPILD-------GKVGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL+ I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDDGERKLHELLDRICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+V + +Y+FLH PVQSGSD VL M R++ + +FR VV+T + + +ATD I G
Sbjct: 224 DVFAANEKLYNFLHAPVQSGSDDVLGEMRRQHQVREFREVVETFDDRLDHWTLATDFITG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415
FP ETD D ++++L++E + ++++++F RPGT AA MK + K+RS +T +
Sbjct: 284 FPTETDADHEESMDLLRETQPERINVTRFSKRPGTDAAEMKGLGGTKKKERSSAMTDLKM 343
Query: 416 AF--TPYLGMEGRVERIWITEI----AADGIHLGYVQVLV---PSTGNMLGTSALVKITS 466
Y M G + + E + Y QV++ P G G V+IT
Sbjct: 344 DVVGAAYESMVGERHEVLVVEPGTGESVKCYDEAYRQVIIQNAPEHGVAPGDLLTVEITG 403
Query: 467 VGRWSVFGEVI 477
FGE +
Sbjct: 404 QNTVYAFGEPV 414
>gi|373859092|ref|ZP_09601824.1| RNA modification enzyme, MiaB family [Bacillus sp. 1NLA3E]
gi|372451183|gb|EHP24662.1| RNA modification enzyme, MiaB family [Bacillus sp. 1NLA3E]
Length = 451
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 137/447 (30%), Positives = 223/447 (49%), Gaps = 34/447 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + +D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEQGYERVEFETTSDVYIINTCTVTNTGDKKSRQIIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ K+ + V GC Q S ++ + GV +V G Q ++++ +E+ + + V
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEILAIPGVDVVVGTQDRVKMLDFIEQYKQERQPINGV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + +V +
Sbjct: 123 RNIMKSRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI- 288
+ ++ G KE+ L+ TG YG D+ NL +LL + E+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLQDLEKEVK--GLKRLRISSIEASQIT 239
Query: 289 ---LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+E +K ++RH LH+P+QSGS++VL M R+YT+ F +D L E++PG
Sbjct: 240 DEVIEAIKNSNIIVRH------LHIPLQSGSNSVLKRMRRKYTMEFFAERLDRLKEVLPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ I +D+I GFPGET+E+F +T N I+E++F ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAITSDVIVGFPGETEEEFMETYNFIEEHQFSELHVFPYSKRTGTPAARMEDQVDEEVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD--------GIHLGYVQVLVPSTGN 454
R L S+ + EG V + E + G Y++V+ T
Sbjct: 354 DRVHRLISLSDQLAKEYASQFEGEVLEVIPEEKHHENDESPLYTGYADNYLKVVFAGTEA 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILN 481
M+G VKIT VG G+ I++LN
Sbjct: 414 MIGKIVKVKITKVGYPYNEGQFIRVLN 440
>gi|428200507|ref|YP_007079096.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
gi|427977939|gb|AFY75539.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
Length = 451
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 221/451 (49%), Gaps = 48/451 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFVRSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++EE G +V
Sbjct: 69 AKRKHEQPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLHDLLEEVFAGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPVHIME-DITKPRRESAVTAW-VNVIYGCNERCTYCVVPSVRGIEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ KEV L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELARQDYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + + L P V H+P QSG + +L AM R YT +R +++ + E +
Sbjct: 245 HPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHQRYRQIIEKIRECM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I+ D I GFPGET+E F T+ L+++ F Q++ + + PRPGTPAA + S V
Sbjct: 303 PDASISADAIVGFPGETEEQFENTLQLVEDLGFDQLNTAAYSPRPGTPAAIWENQVSEEV 362
Query: 404 K----KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML- 456
K +R L T E YL GR+E + + D QV+ + GN L
Sbjct: 363 KSDRLQRLNHLVATKAAERTQRYL---GRIEEVLV----EDQNPKDSTQVMGRTRGNRLT 415
Query: 457 ----------GTSALVKITSVGRWSVFGEVI 477
G VKIT +S+ GE++
Sbjct: 416 FFTGNIQQLKGKLVKVKITEARAFSLTGEIV 446
>gi|146297053|ref|YP_001180824.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|229890495|sp|A4XL48.1|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 471
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 218/442 (49%), Gaps = 27/442 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+T ++ T+GC N DSE +AG L+A GY T N EEAD+ + NTC V+ ++S +
Sbjct: 35 NKTYHIITYGCQMNVHDSEKLAGMLNAMGYVETQNLEEADLIIFNTCAVREHAESRVYGN 94
Query: 118 IAKCK--SAKKPLV---VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--T 165
I K KKP + V GC+PQ ++L V I G + + + +++ + T
Sbjct: 95 IGPLKRLKDKKPELIIGVCGCMPQQLEVAQKLAKVFPFLDIIFGTKSLHKFPQLLYKAIT 154
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
K + + + + +P RR + I GC C+YC + RG S E
Sbjct: 155 TKKTVIDVAEDEDVVVEGIPTARREGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEE 214
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMT 283
++ ++ + A+GVKEV L ++ +YG+D+ +P LL + A +G +R +
Sbjct: 215 IIFEIQQLAANGVKEVTLLGQNVNSYGKDLPDGIPFYKLLEKVNA---IEGIERIRFVTS 271
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + L L C + +H+PVQSGS +L MNR YT D+ +V+ L E +
Sbjct: 272 HPKDLSDELIFAMRDLEKVCEH--IHLPVQSGSTRILRQMNRHYTKEDYLRLVEKLKENI 329
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
P + I TDII GFPGET+EDF T++++++ +F + + R GT AA+M +VP V
Sbjct: 330 PDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIYSKRKGTKAAQMPNQVPDEV 389
Query: 403 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAA-----DGIHLGYVQVLVPSTGNM 455
+R + L + E A M G+V I I + +G V V +
Sbjct: 390 KHERFQRLVKLVEEIALKKNQQMLGKVCEILIDGYSKRNNLLEGRTRTNKVVNVKCSDEF 449
Query: 456 LGTSALVKITSVGRWSVFGEVI 477
+ VKI R ++GEVI
Sbjct: 450 MYKFVNVKILEASRHWLYGEVI 471
>gi|113474257|ref|YP_720318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Trichodesmium
erythraeum IMS101]
gi|123057124|sp|Q119H9.1|MIAB_TRIEI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|110165305|gb|ABG49845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Trichodesmium erythraeum
IMS101]
Length = 451
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 223/450 (49%), Gaps = 48/450 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G +++ +ADI L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILDNMGLISSEDPNKADIILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
+ K+P L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G++V
Sbjct: 69 AKRKHKQPDLTLIVAGCVAQQEGAALLRRVPELD--LIMGPQHANRLQDLLEQVFNGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ K RR+ K + I GC CTYC RG S T E++ +
Sbjct: 127 VATEPIHI-VEDITKPRRDSKITAWVNIIYGCNEHCTYCVVPSVRGVEQSRTPEAIRAEM 185
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGM 282
+ G +E+ L ++ AYGRD+ G N + + V ++P G +R
Sbjct: 186 EELGRQGYQEITLLGQNIDAYGRDLPGVTKEGRNKYTFTDLLYYVHDVP--GVERIRFAT 243
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P + E L + AE+ P V H+P QSG + +L AM R YT +R ++D + E
Sbjct: 244 SHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNKLLKAMARGYTHEKYRRIIDKIRE 300
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
L+P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA +
Sbjct: 301 LMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLGE 360
Query: 402 VVK----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML- 456
VK +R L V A M GR+E + + ++ QV+ + GN L
Sbjct: 361 EVKSDRLQRLNHLVGVKAADRSQRYM-GRIEEVLVEDMNPKNA----AQVMGRTRGNRLT 415
Query: 457 ----------GTSALVKITSVGRWSVFGEV 476
G VKIT V +S+ GEV
Sbjct: 416 FFEGDIAQLKGKLVKVKITEVRPFSLTGEV 445
>gi|384265286|ref|YP_005420993.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898282|ref|YP_006328578.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
gi|380498639|emb|CCG49677.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172392|gb|AFJ61853.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
Length = 509
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 218/435 (50%), Gaps = 24/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ--VLVPSTG--NMLGTS 459
+ L + + + EGR + + + + I GY + LV G + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 460 ALVKITSVGRWSVFG 474
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|374339750|ref|YP_005096486.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Marinitoga piezophila KA3]
gi|372101284|gb|AEX85188.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Marinitoga piezophila KA3]
Length = 450
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 223/441 (50%), Gaps = 28/441 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
Y+KTFGC N ++SE M G L G+ T+N +EAD+ ++N+C V+ +++ + I
Sbjct: 3 FYIKTFGCQMNVNESEIMTGILEKEGFEWTENPQEADVIILNSCAVREKAENKLYGAIGS 62
Query: 120 --KCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K K K+ L++A GCV + ++ ++ V+ V G + + + ++ + +
Sbjct: 63 YGKLKKKKEDLIIAVGGCVAEKEKENIIQRFHEVNFVFGTRNYMNIKKFIDRAKRSKKRF 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V L + DLPK +K + I GC CTYC + R S VE ++ V
Sbjct: 123 VDLSDEIDKISADLPKHPYSKHHGWINIIYGCNKYCTYCIVPYTRHLEKSRPVEDIIKEV 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFIL 289
+ +G +E+ ++ +YG+D G P LN ++ E D + + P I
Sbjct: 183 KYYNDNGYREITFLGQNVDSYGKDFGDGKP-KLNILIKEAAKYDSIERIWFLTSYPSDIT 241
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L I EV +P H+PVQ+GS+ +L AMNR+YT + +++ + + VP + I+
Sbjct: 242 DDL--IEEVANNPKAAKNFHLPVQAGSNNILRAMNRKYTREYYLELLEKIKKTVPKVTIS 299
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRS 407
+DII GFPGETDEDF +TV L+K+ ++ +++++++ PR GT +A+ + +P + KR
Sbjct: 300 SDIIVGFPGETDEDFEETVELVKKARYERLNLAEYSPREGTISAKYYEDNIPKRIKNKRF 359
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLGYV----QVLVPSTGNMLGT 458
+ L ++ E YL +V + G +LG V+ S + G
Sbjct: 360 QYLMNIQKQINHEENEKYL---DKVLTVIQENKTKSGAYLGRTINNKVVIFESNPELSGK 416
Query: 459 SALVKITSVGRWSVFGEVIKI 479
VKI + ++GEV+ I
Sbjct: 417 FVKVKINKISAGPLYGEVVAI 437
>gi|121534805|ref|ZP_01666625.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121306600|gb|EAX47522.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 432
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 138/422 (32%), Positives = 209/422 (49%), Gaps = 33/422 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC NQ ++E + G GY + E AD+++INTC+V + LI +
Sbjct: 8 TLGCKVNQFETEVIEGLFKQRGYTIVSFDEPADVYVINTCSVTHLGEKKSRQLIRRAARV 67
Query: 123 SAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLL----- 174
+ + +V GC Q S D + + GV IVG Q R+V++VEE + +V +
Sbjct: 68 NPEAVIVATGCYAQVSPDKVAAIPGVDVIVGTQDRGRIVDLVEEARRTRGQVNAVTDIME 127
Query: 175 --HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +P D P R L I GC CTYC +ARG L S +++S+
Sbjct: 128 AEQFEDIPIFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLDSVKREAEK 183
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+IA G KE+ L+ GAYGRD+G L L +A+ L G LR+ + + L
Sbjct: 184 LIATGFKEIVLTGIHLGAYGRDMGDGLE-LADAVETVLSVAGLVRLRLSSLESVEVSDRL 242
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+A + R + LH+P+Q+G D VLS MNR YT ++ +V + VP + + TD+
Sbjct: 243 --VALMRRDAKLCPHLHLPLQAGDDHVLSQMNRHYTTEEYSRLVGDIRRRVPDLAVTTDV 300
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
I GFPGET F ++ ++ F +VHI + R GTPAA +VP K+R RE+
Sbjct: 301 IVGFPGETPTMFANSLAFVERMAFAKVHIFPYSRRSGTPAATYPNQVPEEEKKRRVREMQ 360
Query: 412 SVFE----AF-TPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALV 462
V E AF ++G E V + E A DG+ G Y++V +++GT +V
Sbjct: 361 RVAEKGAAAFLAAFVGREMEV----LFETANDGVLDGLTGNYIRVYTRGGVDLVGTLGVV 416
Query: 463 KI 464
++
Sbjct: 417 RL 418
>gi|319651610|ref|ZP_08005737.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
gi|317396677|gb|EFV77388.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
Length = 450
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 225/450 (50%), Gaps = 34/450 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC N ++E + GY TD +D+++INTCTV + +I +
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKEAGYERTDFESVSDVYVINTCTVTNTGDKKSRQVIRR 63
Query: 121 C--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV----- 171
K+ + V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 64 AIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINGVG 123
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ + LD+P ++ L I GC CT+C ARG + S + ++ + +
Sbjct: 124 NIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQ 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ L+ TG YG D+ NL +LL + A++ G LRI I +
Sbjct: 183 QLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQITD 240
Query: 291 HLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ E+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+
Sbjct: 241 EVIEVMDQSKVVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLERLKEALPGL 294
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
+ +D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ + +
Sbjct: 295 AVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDDQIDEEIKNE 354
Query: 406 RSRELTSVFEAFTPYLG--MEGRVERIW----ITEIAADGIHLG----YVQVLVPSTGNM 455
R L ++ + EG V + E + + +G Y++V+ P+ M
Sbjct: 355 RVHRLIALSDQLAKEYASQYEGEVLEVIPEESFKESSDSSLFVGYTDNYLKVVFPAAEEM 414
Query: 456 LGTSALVKITSVGRWSVFGEVIKILNQVDD 485
+G VKIT G G+ ++ L+++++
Sbjct: 415 VGQIVKVKITKAGYPYNEGQFVRALDELNE 444
>gi|443478976|ref|ZP_21068653.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
7429]
gi|443015642|gb|ELS30506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
7429]
Length = 453
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 219/452 (48%), Gaps = 50/452 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY T+ SEEAD+ L NTC+++ ++ + + + +
Sbjct: 10 HIVTFGCQMNKADSERMAGVLEDMGYHSTEESEEADLILYNTCSIRDNAEQKVYSYLGRQ 69
Query: 122 KSAKK-----PLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K+ LVVAGCV Q R + EL+ V +G Q ++R+ ++E+ G++V
Sbjct: 70 AKRKRDNPNLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHVNRLGHLLEQVFNGNQV 127
Query: 172 RLLHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ RRN V + I GC CTYC RG S T ES+ +
Sbjct: 128 AATEEAYIEE-DITTPRRNSSVAAWVNIIYGCNENCTYCIVPSVRGREQSRTPESIRQEI 186
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGM 282
+ A G KE+ L ++ AYGRD+ GV I ++ + +G +R
Sbjct: 187 EKLAAQGYKEITLLGQNIDAYGRDLPAGGIGAGVGGKITFTDLLYYVHDIEGIDRIRYAT 246
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P + L K AE+ P + H+P QSG + +L AM R YT +R +++ + E
Sbjct: 247 SHPRYFSSRLIKACAEL---PKICEHFHIPFQSGDNDILKAMARGYTHERYRRIIEDIRE 303
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
++P I D I FPGET+E F +TV L+ + F V+ + + PRPGTPAA S
Sbjct: 304 IMPDAAITADAIVAFPGETEEQFERTVQLVNDIGFDLVNTAAYSPRPGTPAAVWDDQLSE 363
Query: 402 VVKK-RSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLGYVQVLVPSTGN--- 454
VK R + L V A GR+E I I +G H +Q++ + N
Sbjct: 364 TVKSDRLQRLNHVVNQNAAERSQRYAGRIEEIMI-----EGTNHKNPLQIMGRTRTNRIA 418
Query: 455 ------------MLGTSALVKITSVGRWSVFG 474
++G + +KIT V +S+ G
Sbjct: 419 FTENTTGQSLAELIGKTISIKITEVRPFSLTG 450
>gi|428778989|ref|YP_007170775.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
gi|428693268|gb|AFZ49418.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
Length = 447
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 194/362 (53%), Gaps = 26/362 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L A GY ++ AD+ + NTCT++ ++ + + +
Sbjct: 10 HITTFGCQMNKADSERMAGILDAMGYQAEEDPYLADLVVYNTCTIRDNAEQKVYSYLGRQ 69
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KSA LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ +G++V +
Sbjct: 70 AKRKQKSADLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQV-V 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ + +NV GC C+YC + RG S T E++ +
Sbjct: 129 ATEPIYIMEDITKPRRDSDISAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
T+ A G +EV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 188 TLAAQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM+R YT +R +VD +
Sbjct: 246 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEILKAMSRGYTHEKYRRIVDKIRHY 302
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I FPGET+E F T+ L+ + +F Q++ + + PRPGTPAA + S
Sbjct: 303 LPDAAISADAIVAFPGETEEQFQNTLKLVDDVEFDQLNTAAYSPRPGTPAANWEDQLSDE 362
Query: 403 VK 404
VK
Sbjct: 363 VK 364
>gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska
E43]
gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
Length = 434
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 16/360 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + GY++TD + AD+++INTCTV + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+G + ++ +++ ++ DG +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGAGVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ ++ C + H+ +QSGSDA L MNR YT ++ V TL + + + I TD+I
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
GFPGET+E+FN+T +K+ K +VH+ ++ PR GT AA M ++ + KRS+ L+ +
Sbjct: 302 GFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIKDKRSKILSEL 361
>gi|455652050|gb|EMF30731.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
gancidicus BKS 13-15]
Length = 508
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 197/389 (50%), Gaps = 18/389 (4%)
Query: 45 LSKTGSLSPKIP--GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWL 100
++ + SP + T T ++T+GC N DSE +AG L GY A + +AD+ +
Sbjct: 1 MTSSSDRSPAVDVLSTRTYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPQGSDGDADVVV 60
Query: 101 INTCTVKSPSQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GV 152
NTC V+ + + + + K A +P + V GC+ Q RD +K V +V G
Sbjct: 61 FNTCAVRENADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGT 120
Query: 153 QQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCK 210
I ++ ++E E ++ + L A LP R + + + I+VGC CT+C
Sbjct: 121 HNIGKLPVLLERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCI 180
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270
RG ++ + ++A+GV E+ L ++ AYG DIG + + A
Sbjct: 181 VPALRGKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACG 239
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
DG +R +P + + IA + P V LH+P+QSGSDA+L AM R Y
Sbjct: 240 TIDGLERVRFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDAILKAMRRSYRQE 297
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390
F +++ + +P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGT
Sbjct: 298 RFLGIIEKVRAAIPHAAISTDIIVGFPGETEEDFQQTLHVVREARFAQAFTFQYSKRPGT 357
Query: 391 PAARMK-KVPSAVVKKRSRELTSVFEAFT 418
PAA M ++P VV++R L ++ E +
Sbjct: 358 PAAEMDGQIPKQVVQERYERLVALQEEIS 386
>gi|443326848|ref|ZP_21055489.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
gi|442793564|gb|ELS03010.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
Length = 446
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 219/441 (49%), Gaps = 34/441 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L + T+ +AD+ L NTCT++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILEEMDFQWTEEPNDADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71
Query: 125 K--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K KP LVVAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 72 KHQKPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131
Query: 177 KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ K RR+ K + I GC C+YC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSKVTAWVNIIYGCNERCSYCVVPNVRGTEQSRTPEAIKSEMSDIGK 190
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLP------ILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
G KE+ L ++ AYGRD+ + P L + + + +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTPEGRHQHTLTDLLYYVHDVETVDRIRFATSHPRYFT 250
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E L + + L P V H+P QSG + +L AM R YT +R ++D + +P I+
Sbjct: 251 ERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHEKYRRIIDKIRHYMPDAAIS 308
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----K 405
D I GFPGET+E FN T+ L+++ F ++ + + PRPGTPAA + S VK +
Sbjct: 309 ADAIVGFPGETEEQFNNTLKLVEDIGFDLINTAAYSPRPGTPAALWEDQLSEEVKSDRLQ 368
Query: 406 RSREL--TSVFEAFTPYLGMEGRVERIWI----TEIAAD--GIHLGYVQVLVP-STGNML 456
R L T+ E YL RVE + + T+ A G G P N+L
Sbjct: 369 RLNHLVATTAAERSQRYL---NRVEEVLVEAQNTKDTAQVMGRTRGNRLTFFPGKIENLL 425
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G + VKIT +S+ GE+I
Sbjct: 426 GKTVKVKITEYRAFSLTGEMI 446
>gi|289522346|ref|ZP_06439200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504182|gb|EFD25346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 453
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 221/443 (49%), Gaps = 32/443 (7%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---- 121
+GC NQ D + + L G+ TD +E AD +I TC+++ ++ + + I +
Sbjct: 13 YGCQMNQYDGDRLRTSLIRRGWIETDRNE-ADAVVIVTCSIREKAEQKVLSEIGRYGKLY 71
Query: 122 KSAKKPLV-VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH-- 175
K+ KPL+ V GC+ Q G+ L+ V +V G + I V + +E ++ V L
Sbjct: 72 KTKGKPLLAVIGCMAQNMGADLLRRFPQVKVVAGPRHIGWVPDALENAMRHKTVLYLDED 131
Query: 176 -RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R+ + D P +R N + + I GC CTYC + RG S ++ V ++
Sbjct: 132 PREMIDLHDAPMIRSNPYKAFVTIAHGCDNFCTYCIVPYVRGRFVSRRPGEILKEVSELV 191
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
DGV EV L ++ +YG+D+ LL VA++P G +R ++P E +
Sbjct: 192 DDGVLEVTLLGQNVDSYGKDLKESYRFSNLLQD-VAKVP--GLLRVRFTTSHPRDFTEDV 248
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E C +++P+QSGSD +L MNR YT+ D+ ++ L E +P + I +D+
Sbjct: 249 IEAMAEESKIC--PAVNLPIQSGSDRILKKMNRGYTVEDYGRIIKRLREALPEVSITSDL 306
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
I GFPGET+EDF T+ ++K +F VH + + PR GTPAA M ++P K+R +
Sbjct: 307 IVGFPGETEEDFQCTLEMLKTMEFDLVHTASYSPREGTPAANMSNQIPEEEKKRRLSIVN 366
Query: 412 SVFEA--FTPYLGMEGRVERIWITEIAADGIHLGYVQ--------VLVPSTGNMLGTSAL 461
+ +A F +EG+ + + + A G G +Q VLVP +MLG
Sbjct: 367 ELQDAISFKKNKILEGKFFEVLLDDFAPKG--KGMLQGRTPTDKVVLVPGDESMLGKLCE 424
Query: 462 VKITSVGRWSVFGEVIKILNQVD 484
V+IT W ++GE++ + D
Sbjct: 425 VRITGASNWYLYGEIVSFRDFSD 447
>gi|334117224|ref|ZP_08491316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
gi|333462044|gb|EGK90649.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
Length = 447
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 224/453 (49%), Gaps = 50/453 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ +G++V
Sbjct: 69 AHRKRQEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ D+ K RR+ K + + GC CTYC + RG S E++ +
Sbjct: 129 TEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMED 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G N L + + V ++P G LR ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQHTLTDLLYFVQDVP--GVDRLRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 246 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I D I GFPGET+ F +T+ LI++ F V+ + + PRPGTPAA + S V
Sbjct: 303 PDASITADAIVGFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPGTPAALWENQLSEEV 362
Query: 404 KKRSRE------LTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLGYVQVLVPSTGNML 456
K + T+ E Y GR E + + + D QV+ + GN L
Sbjct: 363 KADRLQRINHVVTTTAMERSQRYF---GRTEEVLVEVQNLKDS-----TQVMGRTRGNRL 414
Query: 457 -----------GTSALVKITSVGRWSVFGEVIK 478
G VKIT + +S+ GE+++
Sbjct: 415 TFFKGDIAELAGKIVRVKITDIRAFSLTGEMVE 447
>gi|150400142|ref|YP_001323909.1| MiaB-like tRNA modifying protein [Methanococcus vannielii SB]
gi|150012845|gb|ABR55297.1| MiaB-like tRNA modifying enzyme [Methanococcus vannielii SB]
Length = 421
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 188/354 (53%), Gaps = 5/354 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + + F + +T + ++DI ++NTC V+ ++ M + I
Sbjct: 7 IYIEGYGCTLNTADTEIIKNSIKEFQNFEITTDLNDSDIIVVNTCIVRQETEHRMISRIE 66
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
KS K +VVAGC+ + E +V ++ ++ + ++ + L
Sbjct: 67 YFKSLNKKVVVAGCMAKALPKKIEYFSDCMVLPREAQNSGNILFKKFIENKEKTNFENNL 126
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L K+ + +PI+ GCLG C+YC K ARG L SY + +V + I G K
Sbjct: 127 SE-KLNKLSSKGLISPMPISEGCLGNCSYCIVKKARGTLESYDRKLIVKKAMEFINSGTK 185
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
+ ++++DT YG D NL L++ I +E+P + +RIGM + F L E+ E
Sbjct: 186 CLLITAQDTACYGYDNNDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPILDELVESF 242
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ V FLH+P+QSG + VL M R YT+ +F +V++ + + TD+I GFP E
Sbjct: 243 KSEKVVKFLHLPIQSGDNQVLKDMGRNYTVDEFISVLNEFKRKIKDLNFTTDVIVGFPSE 302
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
T++ FN T+ ++K+ K H +++ R T AA +K+V + + K+RS L +
Sbjct: 303 TEDAFNNTLEVLKKIKPDFTHGAKYSQRKYTKAALLKQVDTKIRKERSEILNEL 356
>gi|333923603|ref|YP_004497183.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333749164|gb|AEF94271.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 459
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 197/377 (52%), Gaps = 25/377 (6%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K G + ++ TFGC N+ DSE +AG L GY T++ EEADI ++NTC V+ ++S
Sbjct: 13 KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72
Query: 114 MDTLIAKC---KSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE 163
+ L+ + K AK L+ VAGC+ Q K++ I G I + +++
Sbjct: 73 VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ + E + + +K A ++P R++K + I GC CTYC + RG S
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDGST 276
E+++ ++ ++A G KEV L ++ +YG+D+ ++ L + L+ I G
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRFADLLLDLDKIT------GLK 246
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
+R ++P + L +I C + H+P Q+GS+ +L MNR YT + ++
Sbjct: 247 RIRFMTSHPRDFDQRLIDIIASTNKVCEH--FHLPAQAGSNRILKLMNRGYTREHYLQLI 304
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
D + + +PG I +DI+ GFPGET+EDF T++L++ ++ + R GTPAA+M+
Sbjct: 305 DNIRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKME 364
Query: 397 KVPSAVVKKRSRELTSV 413
+VP V R ++L +
Sbjct: 365 QVPEEVKSARIQKLIDL 381
>gi|373454824|ref|ZP_09546687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
YIT 11850]
gi|371935520|gb|EHO63266.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
YIT 11850]
Length = 447
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 220/441 (49%), Gaps = 31/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y T+GC N++D+E + GQL GY +N E+ADI ++NTC+V+ ++ + I +
Sbjct: 13 YTITYGCQMNENDTERINGQLEDLGYKPAENMEDADIVIMNTCSVRQNAEEKVYGKIGEI 72
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVSIV----GVQQIDRVVEVV-EETLKGHEV 171
K K L +AGC+ Q ++ K +E + I+ G I + +++ E +G +
Sbjct: 73 KKLKDKNPRMLLGIAGCMAQENKG-KLIERMPIIDFVIGPYHIHDLKDIISRENARGGHI 131
Query: 172 RLLHRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R D L VR+++ +PI GC CTYC + RG S T++ +
Sbjct: 132 VKTERNPHSVRDYSELRSVRKSRVFAWIPIMQGCNKFCTYCIVPYVRGREISRTIDDICR 191
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
++ + G KE+ L ++ +YG D G N L+ AI DG +R ++P
Sbjct: 192 EIKGLAETGYKEITLLGQNVNSYGLDFRNGTNFGDLIRAIDK---IDGIERVRYMTSHPR 248
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ I + P V +H+PVQ GS+ +L MNR YT+ F+ +V+ + + +P +
Sbjct: 249 DMT--FDMIDAMAASPKVVRHMHLPVQHGSNEMLKQMNRGYTIEHFKELVNYVRQKMPDV 306
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
+ TD+I GFPGET+E +T+ L+KE +F + + PR GTPAARM+ ++ +
Sbjct: 307 ALTTDLITGFPGETEEMHQETIKLLKEVRFDSAYTFIYSPRTGTPAARMENQIDDETKHR 366
Query: 406 RSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLGYVQ------VLVP-STGNML 456
R +EL + L GMEG+ I I + ++ + + +L P G +
Sbjct: 367 RLQELMDTQNEISLELNRGMEGKNYEIIIEGPSKQDVNHWFGRTSTNKMILFPYEEGIKV 426
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G + + K+ + W + GE++
Sbjct: 427 GDTRMAKVDTAQTWVLKGELL 447
>gi|254431186|ref|ZP_05044889.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
gi|197625639|gb|EDY38198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
Length = 476
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 194/392 (49%), Gaps = 23/392 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ ++ TFGC N++DSE MAG L A GY EAD+ L NTCT++ ++ + + +
Sbjct: 33 SYWITTFGCQMNKADSERMAGILEAMGYREAGAELEADLVLYNTCTIRDNAEQKVYSYLG 92
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + +G +V
Sbjct: 93 RQAQRKRANPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLETLLSQVEQGQQV 152
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ RR+ V +NV GC CTYC RG S E++
Sbjct: 153 VATEEHHILE-DITTARRDSSV-CAWVNVIYGCNERCTYCVVPSVRGQEQSRLPEAIRLE 210
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + A G KE L ++ AYGRD+ G L + + +G +R +
Sbjct: 211 MEGLAARGFKETTLLGQNIDAYGRDLPGITPEGRRRHTLTDLLQFVHDVEGIERIRFATS 270
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + L P V H+P QSG DAVL AM R YT+ +R +V + E +
Sbjct: 271 HPRYFTERLIDACAAL--PKVCEHFHIPFQSGDDAVLKAMARGYTVERYRRIVHRIRERM 328
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I+ D+I FPGETD F T+ L++E F QV+ + + PRP TPAA S V
Sbjct: 329 PDAAISADVIVAFPGETDAQFRNTLRLVEEIGFDQVNTAAYSPRPNTPAADWPDQLSEAV 388
Query: 404 K-KRSRELTSVFE--AFTPYLGMEGRVERIWI 432
K +R REL ++ E A GR E++ +
Sbjct: 389 KVERLRELNALVEQQARRRSARYAGRTEQVLV 420
>gi|357039505|ref|ZP_09101298.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
gi|355357868|gb|EHG05638.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
Length = 456
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 220/462 (47%), Gaps = 58/462 (12%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ +S + GY + D AD+++INTCTV LI +
Sbjct: 6 VALTTLGCKVNQYESAALEELFRRRGYQVVDFDSPADVYIINTCTVTHLGDRKSRQLIRR 65
Query: 121 CKSAKKPLVVA--GCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
VVA GC Q + D + +EGV +VG +V++VE KG +V+ +
Sbjct: 66 AGRTNPEAVVAVTGCYAQTAPDEVLNVEGVDLVVGAGHRAEIVDLVENVSKGRKVKAVED 125
Query: 177 -------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
++LP + + + L I GC C+YC +ARG L S + E+++
Sbjct: 126 IARCHDFEELPG----ESHQGRVRAFLKIQEGCENYCSYCIIPYARGPLRSRSPENVLAG 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNP-- 285
VR ++ G KEV L+ TGAYGR GV+L LL A++A +P G LR+ P
Sbjct: 182 VRNLVESGFKEVVLTGIHTGAYGRGNQDGVDLVGLL-ALLANVP--GLVRLRLSSLEPND 238
Query: 286 --PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P +L+ + RH LH+P+QSG D +L M R Y + FR ++ ++ + +
Sbjct: 239 ITPDLLDLMAAGPPFCRH------LHIPLQSGDDYILKRMRRRYDTNYFRRLLASVRDKL 292
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
P + I TDI+ GFPGE DE F +KE +F +H+ ++ PR GTPAA +V V
Sbjct: 293 PEVGITTDIMVGFPGEEDEHFRNGCTFVKEMQFSALHVFKYSPRRGTPAAGFPDQVDPRV 352
Query: 403 VKKRSRELTSVFEAFTPYLGME--GRVERIWI---------------TEIAAD------- 438
++RSR+L +V + GR + + +++ D
Sbjct: 353 KEERSRKLIAVGHSLAQSFAARFLGRTASVLVEQPVDISEHLFSQVDQDLSGDAMNASGE 412
Query: 439 ---GIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
G+ YV+V P+ ++ G A VK+T +G + G +I
Sbjct: 413 LFEGLTDNYVRVYFPAQDSLRGQLADVKVTELGGTGLKGRII 454
>gi|452856306|ref|YP_007497989.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|452080566|emb|CCP22329.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 451
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 229/461 (49%), Gaps = 37/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGN 454
+R +L ++ + EG V I E DG+ +G Y++V+ T +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVVFKGTED 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 414 LIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|308233434|ref|ZP_07664171.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
15829]
Length = 455
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 195/371 (52%), Gaps = 18/371 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS----AM 114
+T +KTFGC N DSE +AG L G EEADI + TC+V+ + + A+
Sbjct: 10 KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 69
Query: 115 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
L+ S K+ + V GC+ Q G++ + + V +V G + V E++ E + +
Sbjct: 70 SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 129
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ V + + + + DLP R F +PI GC CT+C + RG S +E
Sbjct: 130 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 189
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V VR + DGV+EV L ++ +YGRD+ P ++ ++ G +R +NP
Sbjct: 190 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 247
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + IA + P V LH+ VQSGS +L AM+R YT + V+D L +P
Sbjct: 248 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPD 305
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 404
+ ++TDII GFPGET+EDF +T++L++E ++ + RPGTPAA ++ P V++
Sbjct: 306 IALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDTTPHEVIQ 365
Query: 405 KRSRELTSVFE 415
+R LT + E
Sbjct: 366 QRFNRLTDLIE 376
>gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 434
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 193/360 (53%), Gaps = 16/360 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + GY++TD + AD+++INTCTV + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+G ++ ++ +++ ++ DG +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGTDVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ ++ C + H+ +QSGSDA L MNR YT ++ V TL + + + I TD+I
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
GFPGET+++FN+T +K+ K +VH+ ++ PR GT AA M ++ + KRS+ L+ +
Sbjct: 302 GFPGETEDEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIKDKRSKILSEL 361
>gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
Length = 406
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 204/397 (51%), Gaps = 23/397 (5%)
Query: 85 FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD--LK 142
G+ L + EA + + NTCTVK ++ + I + + ++V GC+PQ D L+
Sbjct: 3 LGHRLV-SEREAKVIICNTCTVKDTTEQKILHKIKEWGLQGREVIVTGCMPQVQLDEILE 61
Query: 143 ELEGVSIVGVQQIDR---VVEVVEETLKGHEVR---LLHRKKLPALDLPKVRRNKFVEIL 196
V ++G+ + + ++ V E L+G+ +R + L++P+ R + + I
Sbjct: 62 NNPEVHVLGMNSLLKLGVILNRVHERLEGYSLRPMSVFEDSPEGLLNVPRKRFSPNIHIC 121
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
I+ GC C+YC ARG L S+ +S+V + + +G EVWL+S+D YG D
Sbjct: 122 QISQGCNNRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEGCSEVWLTSQDNAQYGMDKE 181
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
++LP LL I A +P G +R+GM NP L L E+ VY LH+P+QS S
Sbjct: 182 IHLPALLERITA-IP--GDFRVRVGMMNPASTLGILDELLRAYSSEKVYKVLHLPIQSAS 238
Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
D +L M R++T+ +V+ P + TDII GFPGE +EDF T++ I+ Y
Sbjct: 239 DKILEKMRRKHTMEQANFIVEKFRNAFPESTLFTDIIVGFPGEDEEDFELTLDWIRTYHP 298
Query: 377 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLG----MEGRVERIWI 432
+V+IS++ PRP T A + + + + +V +RS +L + LG M GR ++I
Sbjct: 299 DKVNISRYTPRPHTEALQFRNIDTRIVVERSGKLHRLCNQIK--LGKKEDMVGREVEVFI 356
Query: 433 TEIA-ADGIHL---GYVQVLVPSTGNML-GTSALVKI 464
++ A G+ Y V++P G + G VKI
Sbjct: 357 SQKAKVKGLMSRTDSYKPVVIPKAGELCPGQRCRVKI 393
>gi|421074954|ref|ZP_15535973.1| RNA modification enzyme, MiaB family [Pelosinus fermentans JBW45]
gi|392527014|gb|EIW50121.1| RNA modification enzyme, MiaB family [Pelosinus fermentans JBW45]
Length = 435
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 215/443 (48%), Gaps = 38/443 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ ++E M G GY + AD+++INTC+V + +I +
Sbjct: 4 VAFTTLGCKVNQFETEVMEGLFKQRGYEKVPFDQVADVYVINTCSVTHLGEKKSRQIIRR 63
Query: 121 C--KSAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEE--------TLKG 168
+ + + VAGC Q S ++++ +EGV IVG Q R+V++VE+ +
Sbjct: 64 AIRLNPEAVVAVAGCYAQISPKEIEAIEGVKVIVGTQDRKRIVDLVEQAAHCMSPVNVVT 123
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + H + +P + P R L I GC CTYC +ARG L S ++ S++
Sbjct: 124 NIMNAEHFEDIPLFEAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLASIIQ 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+IA G KE+ L+ GAYG D+ + L + + + L G LR+G I
Sbjct: 180 ETEKLIAAGFKEIVLTGIHLGAYGHDVEDKIT-LADVVRSILSIKGLVRLRLGSLESIEI 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L IA + + + S LH+P+Q+G A+L AMNR YTL +++ ++ + V + I
Sbjct: 239 SDEL--IALMKQDDRLCSHLHLPLQAGDAAILKAMNRHYTLDEYQQLITNIRNKVEDIAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA------------RMK 396
+TDII GFPGET E FN + +++ F ++HI + R GTPAA R
Sbjct: 297 STDIIVGFPGETPEMFNNALTFVEKMNFSRMHIFPYSRRSGTPAAEYSGQIPEEEKKRRV 356
Query: 397 KVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGN 454
++ + +K++ E F FT ME + I DG+ Y++V N
Sbjct: 357 QIMQELAEKKADEFLQRFLNRQFTVLFEMENQKNANII-----DGLTGNYIRVYTNGNQN 411
Query: 455 MLGTSALVKITSVGRWSVFGEVI 477
M G S V + R V+G+++
Sbjct: 412 MQGKSYQVLLEKPYRDGVWGKIV 434
>gi|399577306|ref|ZP_10771059.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
gi|399237689|gb|EJN58620.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
Length = 416
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 217/429 (50%), Gaps = 30/429 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S ++ L G+ +AD+ ++NTCTV ++ M T +
Sbjct: 5 HIETYGCTSNRGESRHIEQALRDGGHHPASGPGDADVAILNTCTVVEKTERNMLTRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L++ GC+ L + E GV + V + E + P
Sbjct: 65 EEETADLIITGCMA-----LAQGEEFREAGVDADVLHWDDVPQAAMNGECPTVTPDTEPV 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+
Sbjct: 120 LD-------GTVGILPIARGCMSNCSYCITKFATGRIDSPSVEENVRKARALVHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
++ +DTG YG D G LP LL+ I +G +R+GM NP I +E+ EV
Sbjct: 173 RITGQDTGVYGWDKGDRKLPELLDRIC---DIEGDFRVRVGMANPGGIHGIQEELVEVFA 229
Query: 301 -HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ +Y+F+H+PVQSGSD VL M R++ + F +V+ + + ++TD I GFP E
Sbjct: 230 ANEKLYNFIHLPVQSGSDDVLEDMRRQHRVDKFLDIVEVFDDRLDYWTLSTDFIVGFPTE 289
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VF 414
TDED ++ L+KE + ++++++F RPGT AA MK + + K+RS+E++S V
Sbjct: 290 TDEDHAMSMALMKEVRPEKINVTRFSKRPGTDAADMKGLGGTLKKERSKEMSSAKMDIVA 349
Query: 415 EAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKITSVG 468
+A+ +G V + + E D + Y Q++V + G G V++TS
Sbjct: 350 DAYESMVGTTQNV--LVVEEGTGDSVKCRDGAYRQIIVQNASEHGVEPGDFLDVEVTSHQ 407
Query: 469 RWSVFGEVI 477
FG+ +
Sbjct: 408 TVYAFGKPV 416
>gi|453052257|gb|EME99743.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
mobaraensis NBRC 13819 = DSM 40847]
Length = 507
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 193/378 (51%), Gaps = 17/378 (4%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKS 108
S +P T+T ++T+GC N DSE ++G L GY +N+ E AD+ + NTC V+
Sbjct: 7 SHDVPSTKTYLIRTYGCQMNVHDSERLSGLLEDAGYVRAPENTTEGDADVVVFNTCAVRE 66
Query: 109 PSQSAMDTLIAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVE 160
+ + + + + K +P + V GC+ Q RD +K+ V +V G I ++
Sbjct: 67 NADNKLYGNLGRLAPMKTRRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPV 126
Query: 161 VVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
++E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LLERARIQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKE 186
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278
++ V ++A+GV E+ L ++ AYG DIG + + A +G +
Sbjct: 187 KDRRPGDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERV 245
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R +P + + IA + P V LH+P+QSGSD VL AM R Y F ++D
Sbjct: 246 RFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIDK 303
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K 397
+ +P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M +
Sbjct: 304 VRAAMPDAAISTDIIVGFPGETEEDFEQTMHVVREARFAQAFTFQYSKRPGTPAATMDGQ 363
Query: 398 VPSAVVKKRSRELTSVFE 415
+P VV+ R L + E
Sbjct: 364 IPKEVVQARYERLVELQE 381
>gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
Length = 460
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 195/371 (52%), Gaps = 18/371 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS----AM 114
+T +KTFGC N DSE +AG L G EEADI + TC+V+ + + A+
Sbjct: 15 KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 74
Query: 115 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
L+ S K+ + V GC+ Q G++ + + V +V G + V E++ E + +
Sbjct: 75 SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 134
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ V + + + + DLP R F +PI GC CT+C + RG S +E
Sbjct: 135 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 194
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V VR + DGV+EV L ++ +YGRD+ P ++ ++ G +R +NP
Sbjct: 195 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 252
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + IA + P V LH+ VQSGS +L AM+R YT + V+D L +P
Sbjct: 253 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPD 310
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 404
+ ++TDII GFPGET+EDF +T++L++E ++ + RPGTPAA ++ P V++
Sbjct: 311 IALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDTTPHEVIQ 370
Query: 405 KRSRELTSVFE 415
+R LT + E
Sbjct: 371 QRFNRLTDLIE 381
>gi|70726621|ref|YP_253535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
haemolyticus JCSC1435]
gi|123734986|sp|Q4L5Z6.1|MIAB_STAHJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|68447345|dbj|BAE04929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 514
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 191/365 (52%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY T++ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPEALIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + DG KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRGLARDGYKEITLLGQNVNSYGKDIK-DLEYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+YT + +V+ + + +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKKSIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPEDVKKAR 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|302871917|ref|YP_003840553.1| MiaB family RNA modification protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302574776|gb|ADL42567.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
obsidiansis OB47]
Length = 433
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 226/442 (51%), Gaps = 36/442 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K
Sbjct: 3 IAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKK 62
Query: 121 CK--SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K S + +VV GC PQ +++++ + I+ G + ++V+ V+E L ++
Sbjct: 63 AKKLSPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLD-------NK 115
Query: 177 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 224
KK+ A+D +R F E+ + I GC C+YC +ARG + S ++E
Sbjct: 116 KKIVAID-EGYKRESFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLE 174
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+ VR ++++G KE ++ + AYG+D+ + L++ I +G +R+
Sbjct: 175 SIEEEVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLE 233
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E I+ +L + LH+ +QSGSD +L MNR YT + ++ +V+ + E
Sbjct: 234 PLIMSEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVERIKEKWD 291
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
+ TDII GFPGET+EDFN TV ++E F ++H+ +F P+ GT A M ++ S
Sbjct: 292 DVAFTTDIIVGFPGETEEDFNDTVKFVQEIGFSRIHVFRFSPKKGTKAYDMPNQIDSKEK 351
Query: 404 KKRSRELTSV-----FEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPSTGNML 456
++RS+ + V ++ ++G +E +E+ + +G Y++ LV + ++
Sbjct: 352 ERRSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIV 411
Query: 457 -GTSALVKITSVGRWSVFGEVI 477
G VKIT V GE+I
Sbjct: 412 PGEIYKVKITQAYEQYVKGEII 433
>gi|406667388|ref|ZP_11075146.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
gi|405384756|gb|EKB44197.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
Length = 511
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 215/439 (48%), Gaps = 24/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD----- 115
Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 66 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125
Query: 116 TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K+ + + V GC+ Q ++ LK+ + V +V G I R+ ++ + E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS+ +L M R+YT F +VD + +PG+ +
Sbjct: 305 DDHLIEV--LAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDKIKAAIPGVTL 362
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII G+P ET+E F +T++L ++ F + PR GTPAA+M V K R
Sbjct: 363 TTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMVDNVTEEEKKDRL 422
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWI--TEIAADGIHLGYVQ----VLVPSTGNMLGTS 459
L +V ++ G+EG+ + + + D + GY + V + +G
Sbjct: 423 HRLNAVVSEYSAKALKGLEGQTVEVLVEGSSKRRDDVLAGYTRKNRLVNFKADPKFIGKL 482
Query: 460 ALVKITSVGRWSVFGEVIK 478
VKI +S+ GE ++
Sbjct: 483 VNVKILEAKSYSLMGEFVE 501
>gi|90421992|ref|YP_530362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Rhodopseudomonas palustris BisB18]
gi|123395291|sp|Q21C43.1|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
palustris BisB18]
Length = 473
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/445 (29%), Positives = 223/445 (50%), Gaps = 33/445 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++K+FGC N D++ M L+ G+ T N++EAD+ ++NTC ++ + + + + +
Sbjct: 7 LHIKSFGCQMNVYDAQRMVDALAPEGFVETANADEADLVILNTCHIREKASEKVYSELGR 66
Query: 121 CKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ AK + VAGCV Q G+ ++ V +V G Q + +++ E +G
Sbjct: 67 LRVAKDEAALQGRRMNIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEAARG 126
Query: 169 H---EVRLLHRKKLPALDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E K L P+ +R + + GC CT+C + RG S
Sbjct: 127 GRALETEFPVDDKFGFLPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEVSRP 186
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV---AELPPDGSTMLR 279
V+ +V VR + +GV+E+ L ++ AY D P L A++ A++P G LR
Sbjct: 187 VDKIVEDVRRLADNGVREITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIP--GIVRLR 244
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
++P + + L + L P + F+H+PVQSGSDA+L+AMNR+++ D+R +VD
Sbjct: 245 YSTSHPRDVDQSLIDAHRDL--PALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRF 302
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
P + ++D I GFPGETDEDF T+ L+ + + + ++ PRPGTPAA +++
Sbjct: 303 RSANPAIAFSSDFIVGFPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQETV 362
Query: 400 SAVVKK----RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVP----S 451
SA V R +EL +A + VE ++ G +G L P +
Sbjct: 363 SAAVMDERLVRLQELIDSQQAAFNAAVIGTTVEVLFERAARNPGQIVGRTAYLQPAHVMA 422
Query: 452 TGNMLGTSALVKITSVGRWSVFGEV 476
+++G V+I S+ R+S+ GE+
Sbjct: 423 APDIIGQVLPVRIDSLERYSLIGEL 447
>gi|428205367|ref|YP_007089720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
gi|428007288|gb|AFY85851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
Length = 454
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 223/450 (49%), Gaps = 44/450 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLLLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K + A +VVAGCV Q G L+ + + +V G Q +R+ E++E+ G++V
Sbjct: 69 AKRKQEQADLTIVVAGCVAQQEGETLLRRVPEIDLVMGPQHANRLEELLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIKAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGKQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHTLTDLLYYVHDVP--GVDRLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL M+R YT +R ++D + +L
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIRQL 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPGTPAA S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVADIGFDHLNTAAYSPRPGTPAALWDAQLSEE 361
Query: 403 VKKRSRELTSVFEAFTPYLGME---GRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
VK + + A T + GRVE + + + QV+ + GN L
Sbjct: 362 VKSDRLQRLNHLVATTAQARSQRYLGRVEEVLVEDQNPKNPQ----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVIK 478
G VKIT V +S+ GE I+
Sbjct: 418 DGDIIQLKGQLVTVKITEVRAFSLTGEPIE 447
>gi|452975110|gb|EME74929.1| tRNA methylthiotransferase YqeV [Bacillus sonorensis L12]
Length = 451
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 227/461 (49%), Gaps = 37/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERKDFESTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIKQYQEERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + + G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAQLLKELDSRVK--GLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + ++RH LH+P+QSGS++VL M R+YT+ F + L + +PG
Sbjct: 240 DEVIEVLDKSDKIVRH------LHIPLQSGSNSVLKRMRRKYTMEFFADRLTKLKKALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + +D+I GFPGET+E+F +T N I+E+KF ++H+ + R GTPAARM +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYNFIQEHKFSELHVFPYSKRTGTPAARMDDQVDENVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGN 454
+R +L ++ + EG V I TE D +++G Y++V+ +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGDVLEIIPEEQFTETGEDNLYVGYTDNYMKVVFEGSEE 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
M+G VKIT G G+ ++I DD + + R+SS
Sbjct: 414 MIGQLVKVKITEAGYPYNKGQFVRI---ADDSVPESMRLSS 451
>gi|296132994|ref|YP_003640241.1| MiaB family RNA modification protein [Thermincola potens JR]
gi|296031572|gb|ADG82340.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
Length = 449
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 218/457 (47%), Gaps = 59/457 (12%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ +++TFGC N+ DSE MAG L GY N+E+ADI ++NTCTV+ +++ + I
Sbjct: 9 QKYFLQTFGCQMNERDSETMAGLLEGMGYEPVANAEDADIIILNTCTVRETAENKVWGRI 68
Query: 119 AKCKS--AKKPLVV---AGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG 168
+ K+ +KKP V+ GC+ Q +++ + I G I + E++
Sbjct: 69 GELKALKSKKPDVIIGICGCMAQQKETAEKIRRKAPHIELIFGTHNIHELPEMIN----- 123
Query: 169 HEVRLLHRKKLPALD-----------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
RL+ +K P L+ LP R++K + I GC CTYC + RG
Sbjct: 124 ---RLVAERK-PLLNVWNAEGSIVENLPARRKSKVKAFVSIMFGCNNFCTYCIVPYVRGR 179
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPP 272
S + +V V+++ G KEV L ++ +YG+D+ +L +LN I
Sbjct: 180 ERSRQIADIVREVKSLAEQGYKEVTLLGQNVNSYGKDLPEKTDFSDLLEVLNEI------ 233
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
DG +R ++P L ++ + R V H+PVQSGS+++L MNR YT +
Sbjct: 234 DGIRRIRYMTSHPRDFTSKLIDV--IARSEKVCEHFHLPVQSGSNSILKKMNRGYTREYY 291
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392
+V + +P I TDII GFPGET +DF T++L+ + ++ + R GTPA
Sbjct: 292 FELVAEIRSKIPHASITTDIIVGFPGETRQDFENTMDLLDKVRYDSAFTFVYNKRSGTPA 351
Query: 393 ARM-KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLGYVQ---- 446
A M +VP KR EL F + +E + + E+ A+G+ +
Sbjct: 352 ASMTDQVPDEEKSKRIVELIE----FQNKISLEKNLCEVGREHEVLAEGLKNSQNKVEAR 407
Query: 447 ------VLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
VL+ NM+G VKI G W + GE++
Sbjct: 408 TRTNKLVLLNGDSNMIGNMYRVKIVKAGPWHLDGEIL 444
>gi|366162298|ref|ZP_09462053.1| RNA modification protein [Acetivibrio cellulolyticus CD2]
Length = 477
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/439 (27%), Positives = 226/439 (51%), Gaps = 26/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+ TFGC N+ DSE +AG L GY+ ++ +E+D+ + NTC V+ ++ + +
Sbjct: 43 FYLATFGCQMNEHDSEKLAGMLGEMGYSECEDMDESDLIIFNTCCVRENAELKVYGHLGA 102
Query: 121 CKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE 170
K K+ + + GC+ Q ++ ++ V I G + + E++ + ++
Sbjct: 103 MKHLKEKNPDMIIAMCGCMMQQPEVVEHIKKVYRQVDLIFGTHNLYKFPELLFSAINSNK 162
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ ++ L A ++P R+++ + + GC C+YC + RG S +E++V
Sbjct: 163 TVIDIMDSIGLIAEEMPIERKDEVKAWVTVMYGCNNFCSYCIVPYVRGRERSRYIENIVD 222
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
VR + G+KE+ L ++ +YG+D+G + ++ EL +G +R ++P
Sbjct: 223 EVRMLGRQGLKEITLLGQNVNSYGKDLGNDTT--FAKLLGELNEVEGIERIRFMTSHPKD 280
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + L L C + LH+P QSGS +L MNR+Y+ D+ +++ + +PG+
Sbjct: 281 LSDELIFAMRDLNKVCEH--LHLPFQSGSTRILKEMNRKYSKEDYLNLLEKVKINIPGIS 338
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKKR 406
+ +DII GFPGET+EDF T++++++ +F Q++ + R GTPAA+ + +VP V K+R
Sbjct: 339 LTSDIIVGFPGETEEDFQDTLDVVEKGRFDQIYSFLYSKRTGTPAAKSVDQVPEEVKKER 398
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWI----TEIAADGIHLGYVQ--VLVPSTGN--MLGT 458
+ L V + + E + I + D I+ G + +V GN M+G
Sbjct: 399 FQRLMEVQNRISNEINHEYLDKEIEVLVEGESKTNDKIYTGRTRENKIVNFDGNSEMIGK 458
Query: 459 SALVKITSVGRWSVFGEVI 477
VKI +V WS+ G+V+
Sbjct: 459 LVRVKIDTVKTWSLEGKVL 477
>gi|264680203|ref|YP_003280113.1| tRNA-i(6)A37 thiotransferase protein MiaB [Comamonas testosteroni
CNB-2]
gi|299533989|ref|ZP_07047341.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
testosteroni S44]
gi|262210719|gb|ACY34817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
CNB-2]
gi|298717898|gb|EFI58903.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
testosteroni S44]
Length = 442
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/446 (31%), Positives = 229/446 (51%), Gaps = 34/446 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS+ MA L +A GY T N +EAD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + + K+ V V GCV +G+ +K V +V G Q + R+ E++ + +
Sbjct: 62 DLGRIRHLKEKGVLIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQRAAKAK 121
Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTN 284
V + GVKE+ L ++ AY +G + + LL VAE+P G +R ++
Sbjct: 182 EVAGLAEQGVKEITLLGQNVNAYLGKMGDSSEMADFALLLEYVAEIP--GIERIRYTTSH 239
Query: 285 P----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ + L
Sbjct: 240 PNEFTPRLIEAYAKIPQLVSH------LHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLR 293
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
+ P + +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P
Sbjct: 294 AIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTP 353
Query: 400 SAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHL---GYVQVLVPSTG 453
V +R +EL +V + E G V+R+ + ++ DG L Y +V G
Sbjct: 354 HEVKLRRLQELQAVINTNIKEISEERVGTVQRLLVEGVSKRDGSELMGRTYCNRVVNFPG 413
Query: 454 N--MLGTSALVKITSVGRWSVFGEVI 477
N ++G VKIT +++ GEV+
Sbjct: 414 NERLIGQMVDVKITEAKAYTLRGEVL 439
>gi|418529848|ref|ZP_13095775.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
testosteroni ATCC 11996]
gi|371452904|gb|EHN65929.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
testosteroni ATCC 11996]
Length = 442
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/446 (31%), Positives = 229/446 (51%), Gaps = 34/446 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS+ MA L +A GY T N +EAD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + + K+ V V GCV +G+ +K V +V G Q + R+ E++ + +
Sbjct: 62 DLGRIRHLKEKGVLIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQRAAKAK 121
Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTN 284
V + GVKE+ L ++ AY +G + + LL VAE+P G +R ++
Sbjct: 182 EVAGLAEQGVKEITLLGQNVNAYLGKMGDSSEMADFALLLEYVAEIP--GIERIRYTTSH 239
Query: 285 P----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ + L
Sbjct: 240 PNEFTPRLIEAYAKIPQLVSH------LHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLR 293
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
+ P + +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P
Sbjct: 294 AIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTP 353
Query: 400 SAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHL---GYVQVLVPSTG 453
V +R +EL +V + E G V+R+ + ++ DG L Y +V G
Sbjct: 354 HEVKLRRLQELQAVINTNIKEISEERVGTVQRLLVEGVSKRDGSELMGRTYCNRVVNFPG 413
Query: 454 N--MLGTSALVKITSVGRWSVFGEVI 477
N ++G VKIT +++ GEV+
Sbjct: 414 NERLIGQMVDVKITEAKAYTLRGEVL 439
>gi|323703565|ref|ZP_08115210.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
nigrificans DSM 574]
gi|323531468|gb|EGB21362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
nigrificans DSM 574]
Length = 459
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 197/377 (52%), Gaps = 25/377 (6%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K G + ++ TFGC N+ DSE +AG L GY T++ EEADI ++NTC V+ ++S
Sbjct: 13 KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72
Query: 114 MDTLIAKC---KSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE 163
+ L+ + K AK L+ VAGC+ Q K++ I G I + +++
Sbjct: 73 VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ + E + + +K A ++P R++K + I GC CTYC + RG S
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDGST 276
E+++ ++ ++A G KEV L ++ +YG+D+ ++ L + L+ I G
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRFADLLLDLDKIT------GLK 246
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
+R ++P + L ++ C + H+P Q+GS+ +L MNR YT + ++
Sbjct: 247 RIRFMTSHPRDFDQRLIDVIASTNKVCEH--FHLPAQAGSNRILKLMNRGYTREHYLQLI 304
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
D + + +PG I +DI+ GFPGET+EDF T++L++ ++ + R GTPAA+M+
Sbjct: 305 DNIRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKME 364
Query: 397 KVPSAVVKKRSRELTSV 413
+VP V R ++L +
Sbjct: 365 QVPEEVKSARIQKLIDL 381
>gi|357058862|ref|ZP_09119708.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
gi|355373208|gb|EHG20529.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
Length = 437
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 204/437 (46%), Gaps = 35/437 (8%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL GY T+ E AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQGAGYERTEEMETADVILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + +V E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIEAEHSPVVDVTL 129
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K A +LP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 130 ADKTIAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEIVAEVRRAVA 189
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 190 EGYTEVTLLGQNVNSYGKDHKQADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ +H C + +H+PVQ GS+ +L AMNR YT+ +R + E +P + TD+I G
Sbjct: 248 IKNGQHICEH--IHLPVQYGSNRILKAMNRVYTVEKYRERAQRVREALPNASLTTDLIVG 305
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR-------- 406
FPGETDEDF + + ++E ++ + + R GTPAA M+ +V V R
Sbjct: 306 FPGETDEDFAEMLAFLREMRYDSAYTFLYSKRSGTPAATMECQVSDDVKHARLNALMEEQ 365
Query: 407 ---SRELTSVFEAFTPYLGMEGRVER---IWITEIAADGIHLGYVQVLVPSTGNMLGTSA 460
SR + T + +EG + +W + I VL P G
Sbjct: 366 NAISRAINDRLRGATLEVMVEGASKNDPTVWSGRTRTNKI------VLFPHGAECEGDFV 419
Query: 461 LVKITSVGRWSVFGEVI 477
VKIT W + GE+I
Sbjct: 420 QVKITQPQTWVLKGEII 436
>gi|311031621|ref|ZP_07709711.1| ribosomal protein S12 methylthiotransferase [Bacillus sp. m3-13]
Length = 454
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 229/466 (49%), Gaps = 44/466 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + A Y T+ AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKANNYERTEFEGTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV +V G Q ++++ +E+ + +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDVVVGTQDRVKMLDYIEQFKQERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG + S + +V +
Sbjct: 123 GNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVVTQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N +LL + ++ +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRELDEKV--EGLKRIRISSIEASQIT 239
Query: 290 EHLKEIA----EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ +++RH LH+P+QS S+ VL M R+YT+ F +D L E +PG
Sbjct: 240 DEVIEVLNNSDKIVRH------LHIPIQSASNTVLKRMRRKYTMEFFAERLDRLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ I +D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM +V +
Sbjct: 294 LAITSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQVDEEMKN 353
Query: 405 KR-----------SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLV 449
+R ++E S FE +E E I+ E G+++G Y++V+
Sbjct: 354 ERVHRLIALSDQLAKEYASTFEEEV----LEVIPEEIY-KEAPDQGLYVGYTDNYLKVVF 408
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
P+T M+G VKI G G+ +++L N R+SS
Sbjct: 409 PATEEMVGKLVKVKIAKAGYPYNEGQFVRVLEDAPRLEEENIRLSS 454
>gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
Length = 452
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/455 (31%), Positives = 229/455 (50%), Gaps = 52/455 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G T + EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGLLFTADPNEADVVLYNTCTIRDNAEHKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K+P L++AGCV Q G L+ + + +V G Q +R+ E++E+ +G++V
Sbjct: 69 AKRKHKQPNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELLEQVDEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSNVTAW-VNVIYGCNERCTYCVVPNVRGIEQSRTPEAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ + P L + V ++P G LR +
Sbjct: 187 ELGRLGYKEITLLGQNIDAYGRDLPGSTPEGRHKHTLTDLLSFVHDVP--GIERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM+R YT +R +++T+ E
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQILKAMSRGYTHEKYRRIINTVREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
+P I+ D I GFPGET+E F T+ L+ + F ++ + + PRPGTPAA + +VP
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAALWENQVPDD 361
Query: 402 VVKKRSRELTSVF-----EAFTPYLGMEGRVERIWIT-EIAADGIHLGYVQVLVPSTGNM 455
V R ++L + E Y GR+E + + E D QV+ + GN
Sbjct: 362 VKADRLQQLNHLVGVKAAERSQRYF---GRIEEVLVEGENPRDP-----SQVMGRTRGNR 413
Query: 456 L-----------GTSALVKITSVGRWSVFGEVIKI 479
L G VK+T V +S+ E I++
Sbjct: 414 LTFFVGNLAELKGKVLKVKVTEVRPFSLTAEAIEL 448
>gi|416390510|ref|ZP_11685519.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
gi|357264032|gb|EHJ12968.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
Length = 452
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 220/447 (49%), Gaps = 40/447 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ + + AD+ L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K+ LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 69 AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G + L + + V ++P G LR ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E L + + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMP 303
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA ++ S VK
Sbjct: 304 DASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWEQQLSEEVK 363
Query: 405 K-RSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML----- 456
R + L + +A GR+E + + D QV+ + GN L
Sbjct: 364 SDRLQRLNHLVAQKAAQRSQRYLGRIEEVLV----EDQNPKDNSQVMGRTQGNRLTFCKG 419
Query: 457 ------GTSALVKITSVGRWSVFGEVI 477
G V+IT V +S+ GE I
Sbjct: 420 NIDELKGQLIKVEITEVRAFSLTGEAI 446
>gi|381210061|ref|ZP_09917132.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lentibacillus
sp. Grbi]
Length = 526
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 221/436 (50%), Gaps = 30/436 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG L+ GY T+++++ADI L+NTC ++ +++ + I K
Sbjct: 87 IRTYGCQMNEHDTEVMAGILNEMGYESTNDTKDADIILLNTCAIRENAENKVFGEIGHLK 146
Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
+ K KP L V GC+ Q +R +K+ V ++ G I R+ +V+E + G E
Sbjct: 147 ALKREKPDLILGVCGCMSQEEKVVNRIMKKHPQVDLIFGTHNIHRLPHLVKEAMFGKEKV 206
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPK R+ K + I GC CTYC RG S E ++ V
Sbjct: 207 VEVWSKEGDIIENLPKARKGKVKAWVNIMYGCDKFCTYCIVPMTRGKERSRLPEDIIQEV 266
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + A G KE+ L ++ AYG+D + L ++ +L +R ++P +
Sbjct: 267 RHLTAQGYKEITLLGQNVNAYGKDFE-DSDYGLGDLMDDLHKIDIPRIRFTTSHPRDFDD 325
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L E+ + + + +H+PVQSGS VL MNR YT ++ +V + E +P + T
Sbjct: 326 RLIEV--LAKGGNLLDHIHLPVQSGSSEVLKKMNRRYTREEYLELVRKIREAMPNATLTT 383
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII GFP ET+E F +T++L++E F + PR GTPAAR + VP V K+R
Sbjct: 384 DIIVGFPNETEEQFEETMSLVEEVGFESAFTFIYSPREGTPAARKQDDVPEEVKKQRLYR 443
Query: 410 LTSVF-----EAFTPYLGMEGRVERIWIT-EIAAD-GIHLGYVQ----VLVPSTGNMLGT 458
L + E+ Y + +V ++ + E D + GY + V + +++G
Sbjct: 444 LNELVNKQSAESMQHY---KDKVVKVLVEGESKKDPDVLAGYTERNKLVNFRAPKSLIGK 500
Query: 459 SALVKITSVGRWSVFG 474
VKIT WS+ G
Sbjct: 501 IVDVKITEARTWSLNG 516
>gi|307154937|ref|YP_003890321.1| MiaB family RNA modification protein [Cyanothece sp. PCC 7822]
gi|306985165|gb|ADN17046.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
Length = 446
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 140/455 (30%), Positives = 226/455 (49%), Gaps = 56/455 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY +++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGYQWSEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G + L+ + + +V G Q + + +++++ GH++
Sbjct: 69 AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQYANLLQDLLKQVEDGHQIVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC C+YC + RG S T +++ +
Sbjct: 129 TEPIHI-VEDITKPRRESRVSAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPQAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGVTATGRHLHTLTDLLYYVNDVP--GIERIRFATS 244
Query: 284 NPPFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+P + E L KE+ +V H H+P QSG + +L AM R YT +R +++ +
Sbjct: 245 HPRYFTERLIVACKELPKVCEH------FHIPFQSGDNQILKAMKRGYTQEKYRQIIEKI 298
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
L+P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA
Sbjct: 299 RSLMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWDNQL 358
Query: 400 SAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTG 453
S VK +R L + E YL GR E + + E+ QV+ + G
Sbjct: 359 SEEVKSDRLQRLNHLVGIKAAERSQRYL---GRTEEVLVEEVNPKNP----TQVMGRTRG 411
Query: 454 NML-----------GTSALVKITSVGRWSVFGEVI 477
N L G VKIT V +S+ G+++
Sbjct: 412 NRLTFFEGDINQLKGQIVSVKITEVRPFSLSGKIV 446
>gi|22298858|ref|NP_682105.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Thermosynechococcus elongatus BP-1]
gi|81743104|sp|Q8DJB2.1|MIAB_THEEB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|22295039|dbj|BAC08867.1| tlr1315 [Thermosynechococcus elongatus BP-1]
Length = 450
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 194/386 (50%), Gaps = 28/386 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ TFGC N++DSE MAG L A G L +EAD+ L NTCT++ ++ + + + +
Sbjct: 6 YITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYSYLGRQ 65
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + V +V G Q +R+ E++E+ G +V
Sbjct: 66 AKRKHQDPNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQVWNGSQVVA 125
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 126 TEPLQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGQEQSRRPEAIRAEIE 183
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ A G KEV L ++ AYGRD+ G + + G +R ++P
Sbjct: 184 ELAAQGYKEVTLLGQNIDAYGRDLPGITPEGRRQHTFTDLLYYIHDVAGIERIRFATSHP 243
Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+ E L + AE+ P V H+P QSG + +L AM R YT + +++T+ +P
Sbjct: 244 RYFTERLIRACAEL---PKVCKHFHIPFQSGDNEILKAMARGYTRERYLHIIETIRRYMP 300
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
I+ D I GFPGET+E F +T++L+ F Q++ + + PRP TPAA + +VP A+
Sbjct: 301 DAAISADAIVGFPGETEEQFQRTLDLVAAVGFDQLNTAAYSPRPNTPAATWENQVPEAIK 360
Query: 404 KKRSRELTSVFEAFT-----PYLGME 424
+ R + L + YLG E
Sbjct: 361 EDRLQRLNHLVAKIAGDRSQRYLGRE 386
>gi|419718717|ref|ZP_14246023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum F0468]
gi|383305057|gb|EIC96436.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum F0468]
Length = 475
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 203/384 (52%), Gaps = 24/384 (6%)
Query: 43 NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
N + TG++ K P + + TFGC N DSE ++G LS GY + E+AD+ L
Sbjct: 21 NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 77
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVG 151
NTCTV+ + + + + K +K+ + + GC+ Q + ++++++ + G
Sbjct: 78 NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 137
Query: 152 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
I ++ E++ + LK + V ++ + LP R+ F + I GC C+YC
Sbjct: 138 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 197
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 267
+ RG S E + ++ ++ADGVKEV L ++ +YG+ D +N +LL+ V
Sbjct: 198 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKINFAMLLDE-V 256
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
A++ DG LR +P + + + E+ + + C + LH+P+QSGS A+L MNR Y
Sbjct: 257 AKI--DGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 312
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T + +V + +P + + TDII GFPGET+EDF T++++K+ ++ + R
Sbjct: 313 TKESYLDLVKRIKAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKR 372
Query: 388 PGTPAARMK-KVPSAVVKKRSREL 410
GTPAA+M+ ++ ++K R L
Sbjct: 373 SGTPAAKMEDQIDPDIIKDRFDRL 396
>gi|385265541|ref|ZP_10043628.1| Radical SAM superfamily protein [Bacillus sp. 5B6]
gi|385150037|gb|EIF13974.1| Radical SAM superfamily protein [Bacillus sp. 5B6]
Length = 451
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 229/461 (49%), Gaps = 37/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGN 454
+R +L ++ + EG V I E DG+ +G Y++V+ T +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVVFKGTED 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 414 VIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|375363075|ref|YP_005131114.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|384266153|ref|YP_005421860.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387899175|ref|YP_006329471.1| hypothetical protein MUS_2838 [Bacillus amyloliquefaciens Y2]
gi|451346251|ref|YP_007444882.1| hypothetical protein KSO_007520 [Bacillus amyloliquefaciens IT-45]
gi|371569069|emb|CCF05919.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|380499506|emb|CCG50544.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387173285|gb|AFJ62746.1| conserved hypothetical protein YqeV [Bacillus amyloliquefaciens Y2]
gi|449850009|gb|AGF27001.1| hypothetical protein KSO_007520 [Bacillus amyloliquefaciens IT-45]
Length = 451
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 229/461 (49%), Gaps = 37/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGN 454
+R +L ++ + EG V I E DG+ +G Y++V+ T +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEDGMFVGYTDNYMKVVFKGTED 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 414 VIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|334340539|ref|YP_004545519.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
DSM 2154]
gi|334091893|gb|AEG60233.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
DSM 2154]
Length = 449
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 192/362 (53%), Gaps = 17/362 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA---KC 121
TFGC N+ DSE ++G L GY+ T++ E+ADI ++NTC V+ ++S + L+ K
Sbjct: 12 TFGCQMNERDSESLSGMLEDLGYSPTESQEDADIIILNTCCVRETAESKVFGLLGRLRKR 71
Query: 122 KSAKKPLV--VAGCVPQGSRDLKELEG----VSIV----GVQQIDRVVEVVEETLKGHEV 171
K+A L+ V GC+ Q K + V ++ V ++ R+++ V+E K +
Sbjct: 72 KTANPNLIIGVCGCMTQQEDAAKRIRHSFPFVDLIFGTHNVHELPRMLQQVQEN-KEAVL 130
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ +K A D+P R++K + I GC C+YC + RG S E + ++
Sbjct: 131 EIWTSEKGIAEDVPVRRKDKLKAWVTIMYGCNNFCSYCIVPYVRGRERSRKPEDIFKEIK 190
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ +G KEV L ++ +YG+D+ N + ++ +G +R ++P
Sbjct: 191 ELVKEGYKEVTLLGQNVNSYGKDLE-NTYRFADLLLDLDQIEGLERIRFMTSHPRDFDRR 249
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L ++ R C + H+PVQ+GS+ VL MNR YT + ++ + VPG I D
Sbjct: 250 LIQVIASCRKVCEH--YHLPVQAGSNRVLKQMNRGYTREHYLELIREIRRAVPGASITAD 307
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411
I+ GFPGET+EDF QT++L+++ +F + R GTPAA+M++VP A+ +R + L
Sbjct: 308 IMVGFPGETEEDFEQTLDLVQQVRFDSAFTFIYNTRSGTPAAKMEQVPEAIKSERIQRLI 367
Query: 412 SV 413
+
Sbjct: 368 EL 369
>gi|212638682|ref|YP_002315202.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
gi|212560162|gb|ACJ33217.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 467
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/465 (30%), Positives = 230/465 (49%), Gaps = 37/465 (7%)
Query: 58 TETIYM-----KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
+E IYM T GC N ++E + GY D AD+++INTCTV +
Sbjct: 13 SEVIYMPTVAFHTLGCKVNHYETEAIWQLFKQAGYERKDFESHADVYVINTCTVTNTGDK 72
Query: 113 AMDTLIAKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+I + ++ + V GC Q S ++ + GV IV G Q +++E +E+ +
Sbjct: 73 KSRQVIRRAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYIEQFKQQ 132
Query: 169 HE----VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ VR ++ + LD+P ++ L I GC CT+C ARG + S
Sbjct: 133 RQPINGVRNIMKTRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDP 191
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGM 282
+ ++ + + ++ G KE+ L+ TG YG D+ N +LL + ++ G LRI
Sbjct: 192 KEVIRQAQQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRDMDEQV--KGLKRLRISS 249
Query: 283 TNPPFILEHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
I + E+ +VLR + LH+P+QSGS+AVL M R+YT F + L E
Sbjct: 250 IEASQITD---EVIDVLRQSDKIVRHLHIPLQSGSNAVLKRMRRKYTTEFFAERLARLRE 306
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPS 400
+ P + + +D+I GFPGET+E+F +T I+E +F ++H+ + R GTPAARM +V
Sbjct: 307 VFPDLAVTSDVIVGFPGETEEEFMETYEFIREQRFSELHVFPYSKRTGTPAARMPDQVDE 366
Query: 401 AVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIA----ADGIHLG----YVQVLVP 450
V +R L ++ + EG+V + E+ A G+++G Y++V P
Sbjct: 367 EVKNERVHRLITLSDQLAKEYASKFEGQVLEVIPEELYKEDPASGLYVGYTDNYLKVKFP 426
Query: 451 STGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
+T M+G VKIT G GE +++++ + I R+SS
Sbjct: 427 ATEEMVGQLVKVKITKAGYPYNEGEFVRVIDNAHEAI----RLSS 467
>gi|365840341|ref|ZP_09381533.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
F0357]
gi|364561545|gb|EHM39437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
F0357]
Length = 448
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 190/363 (52%), Gaps = 21/363 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N SDSE AGQL GY +T+++E AD+ L+NTC V+ ++ + I + K
Sbjct: 13 TYGCQMNSSDSERYAGQLEELGYTMTEDAELADVILMNTCCVRETAEDKVLGKIGEFKHL 72
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEE--TLKGHEVRLL 174
K + V GC+ Q R K + +V G I +++++++E +GH +
Sbjct: 73 KARNNDLIIAVTGCMAQEWQERLFKRAPHLDLVIGTHNIHKLIDLIKEREEKRGHALATD 132
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ D+P R KF +PI GC CTYC + RG S +E +V VR +
Sbjct: 133 MDGNV-FYDIPTRRFQKFFAWVPIMNGCNKFCTYCIVPYVRGREVSRPLEEIVEEVRNLA 191
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEH 291
+G KE+ L ++ +YG D G + LL A V E+ DG +R ++P
Sbjct: 192 DEGYKEITLLGQNVNSYGLDFKDGTDFSALLYA-VEEI--DGIERVRYMTSHPKDMTFAM 248
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ IA+ + V + LH+PVQSGS +L MNR Y+ + +++ + E +P + + TD
Sbjct: 249 VDAIAQCSK---VVTHLHLPVQSGSTELLKKMNRGYSAEHYLELIEYVREKIPDVALTTD 305
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 410
+I GFPGET++ F T+ L+K+ ++ + + PR GTPAA M +VP V R R L
Sbjct: 306 LIVGFPGETEDMFQDTLKLLKKVRYDMAYTFIYSPRTGTPAATMGNQVPQEVKSDRLRRL 365
Query: 411 TSV 413
+V
Sbjct: 366 MAV 368
>gi|428775987|ref|YP_007167774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
gi|428690266|gb|AFZ43560.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
Length = 447
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 195/362 (53%), Gaps = 26/362 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L A GY D+ AD+ + NTCT++ ++ + + +
Sbjct: 10 HITTFGCQMNKADSERMAGILDAMGYQAEDDPYLADVVVYNTCTIRDNAEQKVYSYLGRQ 69
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KSA L+VAGCV Q G + L+ + + +V G Q +R+ +++E+ +G+++ +
Sbjct: 70 AKRKQKSADVTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQI-V 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ + +NV GC C+YC + RG S T E++ +
Sbjct: 129 ATEPIYIMEDITKPRRDSDITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G +EV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 188 ILAEQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL AM+R YT +R +VD +
Sbjct: 246 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKAMSRGYTHEKYRRIVDKIRHY 302
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+E F T+ L+++ +F Q++ + + PRPGTP+A+ + S
Sbjct: 303 LPDAAISADAIVGFPGETEEQFQNTLRLVEDVEFDQLNTAAYSPRPGTPSAKWENQLSDE 362
Query: 403 VK 404
VK
Sbjct: 363 VK 364
>gi|15613914|ref|NP_242217.1| hypothetical protein BH1351 [Bacillus halodurans C-125]
gi|10173967|dbj|BAB05070.1| BH1351 [Bacillus halodurans C-125]
Length = 448
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 223/450 (49%), Gaps = 27/450 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ +T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFQTLGCKVNHYETEAIWQLFKGEGYEKVDFEQMADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q +++E +E+ K +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEVMAIPGVDIVVGTQDRKKMLEYIEQYKKERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKSRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ G KE+ L+ TG YG D+ +L LL + +G +RI +
Sbjct: 182 EQLVQAGYKEIVLTGIHTGGYGEDLKDYSLARLLEDLEQ---VNGLKRIRISSIEASQLT 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + E+ + R V LH+P+QSGSD VL M R+YT++ F ++ L E +PG+ +
Sbjct: 239 DEVIEVID--RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLREALPGLAVT 296
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
+D+I GFPGET+ +F +T + I ++KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 SDVIVGFPGETEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVNEDVKNERVH 356
Query: 409 ELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLG----YVQVLVPSTGNMLGT 458
L + + EG V + E + G+++G Y++V +P+T M+G
Sbjct: 357 RLIQLSDQLAKEYASQFEGEVLEMIPEERDKEEPNSGLYVGYTDNYLKVKIPATDEMIGK 416
Query: 459 SALVKITSVGRWSVFGEVIKILNQVDDKIA 488
VKIT G GE +++L++ +A
Sbjct: 417 LVKVKITKAGYPYNEGEFVRVLDEEPQAVA 446
>gi|4104517|gb|AAD02057.1| unknown [Clostridium acetobutylicum DSM 1731]
Length = 386
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 188/359 (52%), Gaps = 14/359 (3%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + G+ + DN E+AD ++INTCTV + +I++ + A
Sbjct: 7 TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRARKA 66
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEVR-LLH 175
K V+A GC Q + E+EGV IV G + I V + +EE + V+ +
Sbjct: 67 NKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNVKDVFT 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L++ + + +K L I GC C+YC +ARG + S E ++G ++ +
Sbjct: 127 DKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIKRLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ LS +YG D+ + L++ I DG +RIG P F E
Sbjct: 186 HGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRFFDEDTISK 244
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ ++ C + H+ +QSG L MNR+YT +++ +V L E + + I TD+I G
Sbjct: 245 IKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIVG 302
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KRSRELTSV 413
FPGETDE+F +T + +KE + ++H+ ++ PR GT AA MK + VK KRS EL +
Sbjct: 303 FPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKRSAELIEL 361
>gi|433444358|ref|ZP_20409277.1| RNA modification enzyme, MiaB family protein [Anoxybacillus
flavithermus TNO-09.006]
gi|432001650|gb|ELK22523.1| RNA modification enzyme, MiaB family protein [Anoxybacillus
flavithermus TNO-09.006]
Length = 450
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 227/458 (49%), Gaps = 32/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQAGYERKDFESHADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q +++E +E+ + + V
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRSKILEYIEQFKQQRQPINGV 122
Query: 172 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N +LL I ++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRDIDEQVK--GLKRLRISSIEASQIT 239
Query: 290 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ +VLR + LH+P+QSGS+AVL M R+YT F + L E+ P + +
Sbjct: 240 D---EVIDVLRQSDKIVRHLHIPLQSGSNAVLKRMRRKYTTEFFAERLARLREVFPDLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
+D+I GFPGET+E+F +T I+E +F ++H+ + R GTPAARM +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYEFIREQRFSELHVFPYSKRTGTPAARMPDQVDEEVKNERV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLG----YVQVLVPSTGNMLG 457
L ++ + EG+V + E+ + G+++G Y++V P+T M+G
Sbjct: 357 HRLIALSDQLAKEYASKFEGQVLEVIPEELYKEDPTSGLYVGYTDNYLKVKFPATEEMVG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKIT G GE +++++ + I R+SS
Sbjct: 417 QLVKVKITKAGYPYNEGEFVRVIDDAHEAI----RLSS 450
>gi|404329066|ref|ZP_10969514.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 495
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/437 (30%), Positives = 215/437 (49%), Gaps = 29/437 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N++DSE MAG L A GY T+++ AD+ L+NTC ++ +++ + I + K
Sbjct: 54 IETYGCQMNEADSEVMAGILEAMGYRPTEDAALADVILVNTCAIRENAENRVFGHIGRMK 113
Query: 123 SAK--KPLVV---AGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K KP ++ GC+ Q ++ L+ V ++ G I R+ ++++E L E
Sbjct: 114 PLKLEKPGLIIGLCGCMAQEETVVNKVLRTYPQVDLIFGTHNIHRLPQLLQEALFSKEMV 173
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LP R F + I GC CTYC + RG S E ++ V
Sbjct: 174 VEVWSKEGDIVENLPVARHGHFQAWVNIMFGCDKFCTYCIVPYTRGKERSRRPEEIISEV 233
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + G KEV L ++ AYG+D+ L ++ E+ G +R ++P +
Sbjct: 234 RDLARRGYKEVTLLGQNVNAYGKDLKDLDHYGLGNLMDEIRKIGIPRVRFMTSHPKDFDD 293
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
HL E+ + C + +H+PVQSG+ +L M R YT + + + VP T
Sbjct: 294 HLIEVLGKGGNLCEH--IHLPVQSGNSDILKIMGRGYTRERYLDLFHKIKNTVPNAAFTT 351
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII GFP ET+ F T++L+KE +F + + PR GTPAARMK +P V K+R +
Sbjct: 352 DIIVGFPNETEAQFEDTLSLVKECRFDGAYTFIYSPRAGTPAARMKDNIPMEVKKERLQR 411
Query: 410 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTG-----NMLGTSAL--- 461
L + + + + + + + E+ +G QVL T N +G +L
Sbjct: 412 LNRLIDQYASESNAKYQDQ---VVEVLVEGTSRKNDQVLSGHTRTNKVVNFVGPKSLIGQ 468
Query: 462 ---VKITSVGRWSVFGE 475
VKIT WS+ GE
Sbjct: 469 LVNVKITETKMWSLDGE 485
>gi|223044509|ref|ZP_03614536.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
SK14]
gi|222442106|gb|EEE48224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
SK14]
Length = 514
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 222/444 (50%), Gaps = 32/444 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425
Query: 407 SRELTSVF-----EAFTPYLGMEGRVERIWITEIAA---DGIHLGYVQ----VLVPSTGN 454
+ L +A + Y EG++ + + E A+ D + GY V +
Sbjct: 426 LQRLNKKVGEYSQKAMSKY---EGKIVTV-LCEGASKKDDTVLAGYTDKNKLVNFKAPKE 481
Query: 455 MLGTSALVKITSVGRWSVFGEVIK 478
M+G VKI ++S+ G +K
Sbjct: 482 MIGKLVDVKIDEAKQYSLNGTFVK 505
>gi|121595917|ref|YP_987813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax sp.
JS42]
gi|229890416|sp|A1WBW2.1|MIAB_ACISJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|120607997|gb|ABM43737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax sp. JS42]
Length = 448
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 142/449 (31%), Positives = 225/449 (50%), Gaps = 40/449 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS+ MA L +A GY TD+ E+AD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + K K V V GCV +G +K V +V G Q + R+ E++ + +
Sbjct: 62 DLGRVKHLKDKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELL--NARAAK 119
Query: 171 VRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
R P ++ LP R + I GC C+YC + RG S E +
Sbjct: 120 ARPQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDV 179
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIG 281
+ V + GVKEV L ++ AY +G + +LL VAE+P G +R
Sbjct: 180 LVEVAGLADQGVKEVTLLGQNVNAYLGAMGDTAEKADFALLLE-YVAEIP--GIERIRFT 236
Query: 282 MTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
++P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ +
Sbjct: 237 TSHPNEFTPRLIEAYAKIPKLVSH------LHLPVQHGSDRILMAMKRGYTAMEYKSTIR 290
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK- 396
L + P M +++D I GFPGET+EDF + + LI + +F F PRPGTPAA +
Sbjct: 291 KLRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLHD 350
Query: 397 KVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHL-GYVQ----VL 448
P V +R +EL +V + E G V+R+ + ++ DG L G + V
Sbjct: 351 DTPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVVN 410
Query: 449 VPSTGNMLGTSALVKITSVGRWSVFGEVI 477
P ++G VKIT +++ GEV+
Sbjct: 411 FPGHERLIGQMIDVKITEARTYTLRGEVV 439
>gi|403237548|ref|ZP_10916134.1| Putative methylthiotransferase yqeV [Bacillus sp. 10403023]
Length = 453
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 221/444 (49%), Gaps = 34/444 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC N ++E + GY T+ AD+++INTCTV + +I +
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKESGYERTEFESTADVYVINTCTVTNTGDKKSRQVIRR 63
Query: 121 C--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV----- 171
K+ + V GC Q S ++ + GV IV G Q +++E +++ + +
Sbjct: 64 AIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRKKMLEYIDQYKQERQPINGVG 123
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ + LD+P ++ L I GC CT+C ARG + S E ++ + +
Sbjct: 124 NIMKTRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEEVIKQAQ 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ L+ TG YG D+ NL LL + +++ G +RI I +
Sbjct: 183 QLVNAGYKEIVLTGIHTGGYGEDMKDYNLAALLRDLESKVI--GLKRIRISSIEASQITD 240
Query: 291 HLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ E+ + V+RH LHVP+QSGS+ VL M R+YT+ F + L + +PG+
Sbjct: 241 EIIEVLDQSKKVVRH------LHVPLQSGSNTVLKRMRRKYTMEFFAERLTKLRQALPGL 294
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
+ +D+I GFPGET+E+F +T N I E+KF ++H+ + R GTPAARM+ ++ V +
Sbjct: 295 ALTSDVIVGFPGETEEEFMETYNFINEHKFSELHVFPYSKRTGTPAARMEDQIDEEVKNE 354
Query: 406 RSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLG----YVQVLVPSTGNM 455
R L S+ + EG V + E+ D G+++G Y++V +T +M
Sbjct: 355 RVHRLISLSDQLAKEYASNYEGEVLEVIPEELDKDDPTSGLYIGYTDNYLKVKFDATEDM 414
Query: 456 LGTSALVKITSVGRWSVFGEVIKI 479
+G VKIT G G+ +KI
Sbjct: 415 IGKIVKVKITKAGYPYNEGKFVKI 438
>gi|404370256|ref|ZP_10975579.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
7_2_43FAA]
gi|226913622|gb|EEH98823.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
7_2_43FAA]
Length = 434
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 219/432 (50%), Gaps = 39/432 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC N +SE MA + GY + D SE AD+++INTCTV + +I++
Sbjct: 3 VAFSTLGCRVNVYESEAMAEKFIREGYEVVDASEAADVYVINTCTVTNMGDKKSRQIISR 62
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEV 171
+ + VA GC Q +++ E+ GV +V G + VV V E + H
Sbjct: 63 ARRLNENATVAVVGCYSQIAPKEVSEIPGVDVVLGTRNKGDVVYYVNKARDEGKSQVHVE 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+L KK L++ + + +K L I GC CTYC ++RG + S + ++ V
Sbjct: 123 GVLKNKKFEELNIEEYQ-DKTRAFLKIQDGCNRFCTYCIIPYSRGSVCSKDPKKVLEEVN 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-- 287
+ G KE+ LS T +YG D+ VNL ++ I +G +RIG P F
Sbjct: 182 KLAEHGFKEIILSGIHTASYGLDLEGSVNLIDIIEEIE---KVEGIERIRIGSIEPAFFT 238
Query: 288 --ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
++E +K+ ++ H H+ +QSG DA L MNR YT ++ V+ L E +P
Sbjct: 239 PEVIEKIKKFKKLCPH------FHLSLQSGCDATLKRMNRRYTAKEYADSVNLLRETMPD 292
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ I TD+I GFPGET+E+FN+T +K K + H+ ++ PR GT AA M+ ++ ++ +
Sbjct: 293 VSITTDVIVGFPGETEEEFNETYEFLKNIKLTKTHVFKYSPRKGTKAADMQDQLDGSIKE 352
Query: 405 KRSRELTSVF-----EAFTPYLGMEGRVERIWITEI-AADGIHLG----YVQVLVPST-G 453
KRS+ L + E ++G E ++ + E+ DGI+ G Y++V VP T
Sbjct: 353 KRSKLLIELSNKNEKEFIEKFIGKE--MDALIEAEVKGKDGIYEGYTRNYIKVQVPCTCA 410
Query: 454 NMLGTSALVKIT 465
++ G ++IT
Sbjct: 411 DVTGKIVDIEIT 422
>gi|427420460|ref|ZP_18910643.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 7375]
gi|425756337|gb|EKU97191.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 7375]
Length = 450
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 221/452 (48%), Gaps = 44/452 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G T+N EAD+ L NTCT++ ++ + + + K
Sbjct: 7 HITTFGCQMNKADSERMAGILDDMGMNWTENPLEADVVLYNTCTIRDNAEQKVYSYLGKQ 66
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 67 AKRKQSDPNVTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLSDLLEQVFSGNQVVA 126
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ K + + GC CTYC RG S T E++ +
Sbjct: 127 TEPVHI-MEDITKPRRDSKISAWVNVIYGCNERCTYCVVPGVRGIEQSRTPEAIRAEMEL 185
Query: 233 VIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTMLRIGMTN 284
+ G EV L ++ AYGRD+ G+ N L V ++P G +R ++
Sbjct: 186 LGQQGYTEVTLLGQNIDAYGRDLPGITPEGRRQNTLTDLLYYVHDVP--GIERIRFATSH 243
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + VL AM R YT +R ++DT+ V
Sbjct: 244 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTQEKYRRIIDTVRRYV 300
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA----RMKKVP 399
P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRP TPAA ++ +
Sbjct: 301 PDAAISADAIVGFPGETEGQFQNTLKLVEDIGFDQLNTAAYSPRPNTPAALWESQLDEPT 360
Query: 400 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+ +R L S+ +A R+ER+ I ++ H QV+ + N L
Sbjct: 361 KSDRLQRLNHLVSI-QAAERSQRYANRIERVLIEDVNPKNPH----QVMGRTRTNRLTFC 415
Query: 457 --------GTSALVKITSVGRWSVFGEVIKIL 480
G V IT V +S+ GE + +L
Sbjct: 416 EGDINELKGKIIEVNITEVRAFSLTGERVNVL 447
>gi|406888093|gb|EKD34682.1| hypothetical protein ACD_75C02237G0006 [uncultured bacterium]
Length = 461
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 225/459 (49%), Gaps = 48/459 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI-- 118
++KTFGC N+ DSE MA LS +GY EAD+ ++NTC++++ ++ + +L+
Sbjct: 6 FFIKTFGCQMNERDSEIMAQSLSGYGYIEGMEMNEADLVILNTCSIRAKAEQKVLSLLGY 65
Query: 119 ---AKCKSAKKPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK-GHEV 171
K K + VAGCV Q G+R L + V +VG Q I + +++ K G V
Sbjct: 66 LRKTKLKRPAMKICVAGCVAQQEGNRLLDRMPHVDLVVGTQNIYNIGPLLQRAEKDGSRV 125
Query: 172 RLLHR------KKLPALDL-------------PKVRRNKFVEILPINVGCLGACTYCKTK 212
R K LPA V+ +KFV I+ GC CTYC
Sbjct: 126 VTELRDDYAIPKFLPAFSPMTTDQAGSDRITPSSVQFSKFVTIMQ---GCNNYCTYCVVP 182
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL---PILLNAIVAE 269
+ RG S V+ ++ V ++ GVKE+ L ++ +YG+ V P + ++ E
Sbjct: 183 YTRGREISRNVDDIIEEVNILVKAGVKEITLLGQNVNSYGKANAVTADRRPYNFSDLLRE 242
Query: 270 LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
+ +G LR +NP + + L + +R+ C H+PVQSGS+ +L +MNR+YT
Sbjct: 243 VSSVEGLARLRFTTSNPKDLTDALMKSFRDVRNLCPQ--FHLPVQSGSNRILKSMNRKYT 300
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ + V+ L E +PG+ + TDII GFPGE+DEDF T+NL+++ +F ++ RP
Sbjct: 301 AAQYLEKVEKLREYMPGIALTTDIIVGFPGESDEDFQDTMNLLEDIRFHGSFSFKYSDRP 360
Query: 389 GTPAA--------RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADG- 439
GT A+ R+K AV ++R E++ + Y+G V +E G
Sbjct: 361 GTQASKLAEKVDERVKMERLAVFQQRQDEISLLRN--REYVGHGQSVMLEECSESGGKGR 418
Query: 440 IHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478
++ G++ G +KI G+ S+ GE+ K
Sbjct: 419 TGTNHIVHFSECRGHVAGDIVRMKIVHAGQHSLRGEIEK 457
>gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8801]
gi|229890509|sp|B7JZ48.1|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801]
Length = 451
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 221/449 (49%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 14 HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 73
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 74 AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 133
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC C+YC + RG S T E+++ +
Sbjct: 134 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 191
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KEV L ++ AYGRD+ G + L + + G +R ++P
Sbjct: 192 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 251
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + L C + H+P QSG + +L AM R YT +R ++D + + +P
Sbjct: 252 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPD 309
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRPGTPAA S VK
Sbjct: 310 ASISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKS 369
Query: 406 -RSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
R + L + E YL GR+E + + D QV+ + GN L
Sbjct: 370 DRLQRLNHLVAQKAAERSQRYL---GRIEEVLV----EDQNPKDSTQVMGRTRGNRLTFF 422
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
G VKIT V +S+ GE++
Sbjct: 423 KGDINQLKGRLIKVKITEVRAFSLTGEIV 451
>gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
Length = 444
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 203/437 (46%), Gaps = 35/437 (8%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GYA T+ + ADI LINTC V+ ++ + I + K K
Sbjct: 17 YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 76
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 77 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 136
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
A DLP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 137 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 196
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 197 EGYREVTLLGQNVNSYGKDHKEADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 254
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ H C + +H+PVQ GS +L AMNR YT+ +R + E +P + TD+I G
Sbjct: 255 IKSGAHICEH--IHLPVQYGSSRLLKAMNRGYTVEKYRERALRVREALPEASLTTDLIVG 312
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-----VPSAVVKKRSREL 410
FPGET+EDF Q + ++E ++ + + R GTPAA M V A + + E
Sbjct: 313 FPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATMANQVADDVKHARLNRLMEEQ 372
Query: 411 TSVFEAFTPYL---GMEGRVE-------RIWITEIAADGIHLGYVQVLVPSTGNMLGTSA 460
++ A L +E VE R+W + I VL P G
Sbjct: 373 NAISRAINERLMGAELEIMVEGASKNDPRVWSGRTRTNKI------VLFPHGAEREGDFV 426
Query: 461 LVKITSVGRWSVFGEVI 477
VKI W + GEV+
Sbjct: 427 RVKINQPQTWLLKGEVV 443
>gi|425469267|ref|ZP_18848217.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
gi|389882035|emb|CCI37463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
Length = 446
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 217/449 (48%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KE+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + E+ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEEVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
G VKIT V +S+ G +
Sbjct: 418 TGNLEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|422301887|ref|ZP_16389252.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
gi|389789024|emb|CCI14978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
Length = 446
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 217/449 (48%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + VL AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
GT VKIT V +S+ G +
Sbjct: 418 TGNIEELRGTFVKVKITEVRPFSLTGVIF 446
>gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 446
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 217/446 (48%), Gaps = 44/446 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFG 474
GT VKIT V +S+ G
Sbjct: 418 TGNIEKLRGTFVKVKITEVRPFSLTG 443
>gi|425453290|ref|ZP_18833048.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
gi|389801446|emb|CCI19386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
Length = 446
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/449 (30%), Positives = 217/449 (48%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
GT VKIT V +S+ G +
Sbjct: 418 TGNIEELRGTFVKVKITEVRPFSLTGAIF 446
>gi|218531460|ref|YP_002422276.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens CM4]
gi|218523763|gb|ACK84348.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
CM4]
Length = 462
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/439 (30%), Positives = 212/439 (48%), Gaps = 35/439 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 21 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 80
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 81 RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 137
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 138 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 196
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 197 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 256
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 257 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 314
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 315 DIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 374
Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWIT-------EIAADGIHLGYVQVLVPSTGN 454
+R L + + G + I + ++A HL VQ P++
Sbjct: 375 TERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS-- 432
Query: 455 MLGTSALVKITSVGRWSVF 473
+GT V+IT G S+F
Sbjct: 433 TIGTVVPVRITRAGSNSLF 451
>gi|399924401|ref|ZP_10781759.1| Fe-S oxidoreductase [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 208/414 (50%), Gaps = 30/414 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T GC NQ +SE M+ GY DN E +D++++NTCTV + S I
Sbjct: 3 KTFSILTLGCKVNQYESEAMSELFEKRGYKEVDNDEFSDVYIVNTCTVTNLSDRKSRQFI 62
Query: 119 AKCKSAKKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K K P +VV GC Q S ++K +EGV +V G + +++V+++EE H
Sbjct: 63 RKSKK-KNPDSVVVVVGCYSQVSPEEVKNIEGVDVVIGTTERNKIVDLIEEFKDSH---- 117
Query: 174 LHRKKLPAL-DLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
KK+ + DL VR N+ + + GC CTYC ARG + S
Sbjct: 118 ---KKINIVKDLKDVREFANTTNFDNNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRE 174
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
++ V R + +G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 175 IDDAVREARILADNGFKEIVLTGIHIGSFGMDMGDMRLIDLIENIAEI--DGIKRIRLSS 232
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
P I + E + L+ + H+ +QSGS+ +L AMNR YT ++ + + +
Sbjct: 233 VEPIIITDEFMERS--LKTEKLCDHFHLSLQSGSNNILKAMNRRYTREEYIEKANIIRKY 290
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
+P + TDII GFPGE++EDF +++++++ F ++H+ ++ R T AA MK ++
Sbjct: 291 MPYAGLTTDIIVGFPGESEEDFEDSMSIVRKVGFSRIHVFKYSKRKNTKAAAMKNQIDGN 350
Query: 402 VVKKRSRELTSVFEAFTPYLGMEG-RVERIWITEIAADGIHLGYVQVLVPSTGN 454
+ K+RS +L ++ E + E ++ + + E D + GY + N
Sbjct: 351 IKKERSEKLIALGEEYQKIFERENMKIPKSVLFEEEHDKEYYGYTTNYIRVKAN 404
>gi|254562377|ref|YP_003069472.1| tRNA modification enzyme MiaB [Methylobacterium extorquens DM4]
gi|254269655|emb|CAX25627.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens DM4]
Length = 446
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/439 (30%), Positives = 212/439 (48%), Gaps = 35/439 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILQAMNRRHTGDAYRRLIERIRNARP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWIT-------EIAADGIHLGYVQVLVPSTGN 454
+R L + + G + I + ++A HL VQ P++
Sbjct: 359 TERLAALQDLLDRQRHAYNAASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS-- 416
Query: 455 MLGTSALVKITSVGRWSVF 473
+GT V+IT G S+F
Sbjct: 417 TIGTVVPVRITRAGSNSLF 435
>gi|406889510|gb|EKD35681.1| hypothetical protein ACD_75C01819G0003 [uncultured bacterium]
Length = 457
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 231/459 (50%), Gaps = 48/459 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N+ DSE MA LS +GY + +EAD+ ++NTC++++ ++ + +L+
Sbjct: 6 FYIKTFGCQMNERDSEIMAQSLSRYGYIEGMDMKEADLVILNTCSIRAKAEQKVLSLLGY 65
Query: 121 CKSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
+ K +P + VAGCV Q G R ++ + V +V G Q I + ++E L R
Sbjct: 66 LRKTKLSRPTMKICVAGCVAQQEGVRLIERMPHVDLVIGTQNIYNLGPLLE-NLDNEGSR 124
Query: 173 LL----HRKKLPAL--DLPKVRRN----------KFVEILPINVGCLGACTYCKTKHARG 216
++ +P+ LP R+ ++ + + I GC CTYC + RG
Sbjct: 125 VITTLWDDYDIPSFLPSLPSNTRSESGAQTTSPFQYSKFVTIMQGCNNYCTYCVVPYTRG 184
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL---PILLNAIVAELPP- 272
S V+ ++ V+ ++ GVKEV L ++ +YG+ V P + ++ ++
Sbjct: 185 REISRNVKDILEEVQILVKAGVKEVTLLGQNVNSYGKTNAVTAAGDPYTFSDLLRDVSNV 244
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
DG LR +NP + + L ++ C H+PVQSGSD +L AMNR+YT+ +
Sbjct: 245 DGLARLRFTTSNPKDLTDALMRSFRDVKKLCPQ--FHLPVQSGSDRILKAMNRKYTVGQY 302
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392
V L E +PG+ + TD+I GFPGE+DEDF T+NL++E +F ++ RPGT A
Sbjct: 303 LEKVKKLHEYLPGIALTTDVIVGFPGESDEDFQGTMNLLEEVRFHGSFSFKYSDRPGTRA 362
Query: 393 ARM--------KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITE----IAADGI 440
+++ K A+ +KR E++ + + Y+ G V+ + I E +A
Sbjct: 363 SQLVGKVDEEIKSERLALFQKRQDEISLLRNS--EYI---GSVKSVMIEECNDNVAKGRT 417
Query: 441 HLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 479
++ G M G V+I G+ S+ G++ +I
Sbjct: 418 DTNHIVHFSDCAGCMPGDMVKVEIVHAGQHSLKGKIDEI 456
>gi|410460472|ref|ZP_11314150.1| YqeV protein [Bacillus azotoformans LMG 9581]
gi|409927087|gb|EKN64233.1| YqeV protein [Bacillus azotoformans LMG 9581]
Length = 451
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/455 (29%), Positives = 229/455 (50%), Gaps = 36/455 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEGIWQLFQEAGYERADFEKIADVYIINTCTVTNTGDKKSRQIIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q + ++ ++ GV IV G Q ++++ V + K E
Sbjct: 63 RAIRKNPDAVVAVTGCYAQTAPAEILDIPGVDIVIGTQDRVKLLDYVRQYEKNREPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E +V +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRMPEDVVKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N +LL + ++ G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDLKDYNFAMLLRELDQKVV--GLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + ++ + ++RH LH+P+QSGSD+VL M R+YT + ++ L E +PG
Sbjct: 240 DEVIDVLDKSEKIVRH------LHIPLQSGSDSVLKRMRRKYTTEFYVDRLNRLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T NLI++ KF ++H+ + R GTPAARM+ +V +
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYNLIRDNKFAELHVFPYSKRTGTPAARMEDQVDEEIKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADG-----IHLG----YVQVLVPSTG 453
R L S+ + EG + + E +G +++G Y++V+ P
Sbjct: 354 DRVHRLISLSDQLAKEYASNYEGDILEVIPEEQFTEGPDRTDLYVGYTDNYLKVVFPGKE 413
Query: 454 NMLGTSALVKITSVGRWSVFGEVIKIL-NQVDDKI 487
+M+G VKIT VG GE + ++ +++++K+
Sbjct: 414 DMIGQIVKVKITQVGYPYSEGEFVSVVSDEIEEKV 448
>gi|422343286|ref|ZP_16424214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
gi|355378593|gb|EHG25773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
Length = 437
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 203/437 (46%), Gaps = 35/437 (8%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GYA T+ + ADI LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 129
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
A DLP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 130 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 189
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 190 EGYREVTLLGQNVNSYGKDHKEADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ H C + +H+PVQ GS +L AMNR YT+ +R + E +P + TD+I G
Sbjct: 248 IKSGAHICEH--IHLPVQYGSSRLLKAMNRGYTVEKYRERALRVREALPEASLTTDLIVG 305
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-----VPSAVVKKRSREL 410
FPGET+EDF Q + ++E ++ + + R GTPAA M V A + + E
Sbjct: 306 FPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATMANQVADDVKHARLNRLMEEQ 365
Query: 411 TSVFEAFTPYL---GMEGRVE-------RIWITEIAADGIHLGYVQVLVPSTGNMLGTSA 460
++ A L +E VE R+W + I VL P G
Sbjct: 366 NAISRAINERLMGAELEIMVEGASKNDPRVWSGRTRTNKI------VLFPHGAEREGDFV 419
Query: 461 LVKITSVGRWSVFGEVI 477
VKI W + GEV+
Sbjct: 420 RVKINQPQTWLLKGEVV 436
>gi|297584113|ref|YP_003699893.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
MLS10]
gi|297142570|gb|ADH99327.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
MLS10]
Length = 516
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 218/439 (49%), Gaps = 30/439 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ DSE MAG L G+ T N +EAD+ L+NTC ++ +++ + I K
Sbjct: 76 IRTYGCQMNEHDSENMAGILLEMGFESTVNQDEADVILLNTCAIRENAENKVFGEIGNLK 135
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K+ + V GC+ Q +R L++ + V ++ G I R+ E+++ + E
Sbjct: 136 VMKRENPGLIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPELIKNAIFSKEMI 195
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ ++P+ R+ +F + I GC CTYC RG S E ++ V
Sbjct: 196 VEVWSQEGDIIENMPRARKGQFQGWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDVIEEV 255
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + +G KE+ L ++ AYG+D+ ++ L ++ ++ G +R ++P +
Sbjct: 256 RHLARNGYKEITLLGQNVNAYGKDL-LDSSYRLADLLDDIRDIGIPRVRFTTSHPWDFDD 314
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L ++ + + + +H+PVQSG++ VL MNR+YT ++ + D + E +P + T
Sbjct: 315 ELIDV--IAKGGNMMEHIHLPVQSGNNDVLKIMNRKYTREEYVALADKIKEKIPHATLTT 372
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII G+P ET+E F T++L+KE F + + R GTPAA M+ VP V K R +
Sbjct: 373 DIIVGYPNETEEQFQDTLSLVKEMAFDAAYTYVYSAREGTPAAAMEDDVPKEVKKDRLQR 432
Query: 410 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST-----------GNMLGT 458
L V + M R E+ +G VL+ T +++G
Sbjct: 433 LNEVVNRHS---AMSNERMRDRTVEVLVEGESKKNPDVLMGRTRTNKLVNFKAPKSVIGE 489
Query: 459 SALVKITSVGRWSVFGEVI 477
VKIT WS+ GE++
Sbjct: 490 LVYVKITDAKSWSLNGELV 508
>gi|157736509|ref|YP_001489192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arcobacter
butzleri RM4018]
gi|229890442|sp|A8ERE9.1|MIAB_ARCB4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157698363|gb|ABV66523.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018]
Length = 436
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 217/442 (49%), Gaps = 26/442 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSA 113
+ + ++++T GC N +DS+++ +L GY T N E+AD+ +INTC+V+
Sbjct: 1 MSSNKKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQK 60
Query: 114 MDTLIAKCKSAKK---PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK 167
+ + I + KK + V GC G +K V +VG + I ++ +VV+ +K
Sbjct: 61 LFSEIGQFNKKKKEGAKIGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVD--VK 118
Query: 168 GH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
G EV + + + + + NK+ + I+VGC CTYC RG S E +
Sbjct: 119 GAVEVSIDNDE--STYEFSTAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEISIPPEMI 176
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V +VR + G EV L ++ +YGR + + + RI T+P
Sbjct: 177 VEQVRKSVEQGAVEVMLLGQNVNSYGRKFSDKREKYTFTKLLQDVSKIDGLERIRFTSPH 236
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + I E ++P + +H+P+QSGS +VL AM R Y+ F + ELVP +
Sbjct: 237 PLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKMRELVPNL 296
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVK 404
+I TDII FPGET EDF T++++++ KF Q+ ++ PRPGT A + K++P +
Sbjct: 297 RITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKELPDEIGS 356
Query: 405 KRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNM 455
+R L + E YL + G I + + +G G Y+QV + +
Sbjct: 357 QR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNGEVCGYTDNYLQVFAKGSDEL 413
Query: 456 LGTSALVKITSVGRWSVFGEVI 477
LG VKIT V R S+ GEV+
Sbjct: 414 LGKFVNVKITDVTRTSLKGEVV 435
>gi|401565221|ref|ZP_10806071.1| MiaB-like protein [Selenomonas sp. FOBRC6]
gi|400188062|gb|EJO22241.1| MiaB-like protein [Selenomonas sp. FOBRC6]
Length = 430
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 215/436 (49%), Gaps = 35/436 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M G A GY + E A++++INTC+V S LI +
Sbjct: 7 TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQLIRRAART 66
Query: 125 KKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----------- 169
+ V GC Q +++ LEGV +V G + R+V+ VEE L+
Sbjct: 67 NPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKARARIVDYVEEALRADTGATGTITDIM 126
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ R+ + +P LP R L I GC CT+C +ARG + S + ++
Sbjct: 127 QARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVARE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ + G EV L+ GAYG D+ P L +A L LR+G +
Sbjct: 181 MKLLTEAGFYEVVLTGIHLGAYGIDLAAR-PTLADACRTALAEKSLRRLRLGSLES---V 236
Query: 290 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E ++ E++R P + LH+P+Q+GSD VL AMNR Y + F +++ + VPG+ I
Sbjct: 237 ELSADLLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFAHLLEEVRAAVPGVAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+TDII GFPGET+EDF ++ +++ F ++H+ + R GTPAAR +VP V K+R+
Sbjct: 297 STDIIVGFPGETEEDFAVGLDFVRQMGFARMHVFPYSARKGTPAARRSDQVPPTVRKERA 356
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSAL 461
+ ++ + + G V + E DG+ G Y++V + G A
Sbjct: 357 ARMQALADELAEEYHRAALGSVADVLF-ETTEDGVTDGLTETYIRVYTDAPVTR-GQIAP 414
Query: 462 VKITSVGRWSVFGEVI 477
+++T + R V+GE+I
Sbjct: 415 LRLTHLYRDGVWGEMI 430
>gi|308174331|ref|YP_003921036.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens DSM 7]
gi|307607195|emb|CBI43566.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens DSM 7]
Length = 451
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/461 (28%), Positives = 229/461 (49%), Gaps = 37/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGN 454
+R +L ++ + EG V I E DG+ +G Y++V+ T +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVVFKGTED 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
++G VKI G G+ +++ V++++ N R+SS
Sbjct: 414 LIGKLVKVKIQKAGYPYNEGQFVRV---VEEEMTQNMRMSS 451
>gi|170078520|ref|YP_001735158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. PCC 7002]
gi|229891029|sp|B1XQK7.1|MIAB_SYNP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|169886189|gb|ACA99902.1| tRNA-i(6)A37 thiotransferase enzyme [Synechococcus sp. PCC 7002]
Length = 451
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 219/453 (48%), Gaps = 46/453 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY T++ AD+ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEEMGYHFTEDPYAADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAK--KP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K KP L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G +V
Sbjct: 68 AKRKQEKPDLTLIVAGCVAQQEGESLLRRVPELD--LIMGPQHANRLQDLLEQVEGGSQV 125
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ K RR+ V +NV GC CTYC RG S E++
Sbjct: 126 VATEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIRAE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 281
+ + G KEV L ++ AYGRD+ G N L + + V ++P G +R
Sbjct: 184 MEELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYTLTDLLYYVHDVP--GIERIRFA 241
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P + E L + + L P V H+P QSG + VL AM R YT +R +++T+
Sbjct: 242 TSHPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMRRGYTHEKYRRIINTIRS 299
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401
+P I+ D I FPGET+E F T+ L+ E F Q++ + + PRPGTPAA S
Sbjct: 300 YMPDASISADAIVAFPGETEEQFENTLKLVDEIGFDQLNTAAYSPRPGTPAATWDNQLSE 359
Query: 402 VVK-KRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-- 456
VK R + L + +A GR+E + + D QV+ + GN L
Sbjct: 360 EVKGDRLQRLNHLVAQKAAERSQRYAGRIEEVLV----EDQNPKNPSQVMGRTRGNRLTF 415
Query: 457 ---------GTSALVKITSVGRWSVFGEVIKIL 480
G VKIT +S+ GE ++ L
Sbjct: 416 FEGEINELKGKIVAVKITEARAFSLTGEAVEAL 448
>gi|15643418|ref|NP_228462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
maritima MSB8]
gi|418045177|ref|ZP_12683273.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
gi|81553183|sp|Q9WZC1.1|MIAB_THEMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|4981175|gb|AAD35737.1|AE001738_17 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678259|gb|EHA61406.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
Length = 443
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 225/434 (51%), Gaps = 23/434 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N++DSE MAG L G+ + EEAD+ +INTC V+ S+ + + +
Sbjct: 3 FYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 121 CKSAKKPLV----VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL- 174
KK VAGCV + R+ +G V G + + RV E V++ L+G +V L
Sbjct: 63 VLKLKKKKKIVVGVAGCVAEKEREKFLEKGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R ++ + I GC CTYC + RG S + ++ V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ + ++P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAISSD 296
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 409
II GFP ET+EDF +TV+L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQF 356
Query: 410 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLG--YVQVLVPSTGN--MLGTSALVK 463
L ++ + L G+ RI + A +G+ G ++ G M+G A VK
Sbjct: 357 LMNLQKRINRKLNERYRGKTVRIIVEAQAKNGLFYGRDIRNKIIAFEGEDWMIGRFADVK 416
Query: 464 ITSVGRWSVFGEVI 477
+ + ++G+V+
Sbjct: 417 VEKITAGPLYGKVV 430
>gi|428316469|ref|YP_007114351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
gi|428240149|gb|AFZ05935.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
Length = 466
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 140/452 (30%), Positives = 221/452 (48%), Gaps = 50/452 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + + +
Sbjct: 29 HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 88
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G L+ + + +V G Q +R+ +++E+ +G++V
Sbjct: 89 AHRKRQEPGLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVA 148
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ D+ K RR+ K + + GC CTYC + RG S E++ +
Sbjct: 149 TEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMED 207
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ P L V ++P G LR ++
Sbjct: 208 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSHQHTLTDLLYFVQDVP--GVDRLRFATSH 265
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 266 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYM 322
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I D I GFPGET+ F +T+ LI++ F V+ + + PRPGTPAA + S V
Sbjct: 323 PDASITADAIVGFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPGTPAALWENQLSEEV 382
Query: 404 KKRSRE------LTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-GYVQVLVPSTGNML 456
K + T+ E Y GR E E+ + +L QV+ + GN L
Sbjct: 383 KADRLQRINHVVTTTAMERSQRYF---GRTE-----EVLVEAQNLKDSTQVMGRTRGNRL 434
Query: 457 -----------GTSALVKITSVGRWSVFGEVI 477
G VKIT + +S+ GE++
Sbjct: 435 TFFKGDIAELAGKMVRVKITDIRAFSLTGEML 466
>gi|229890681|sp|B7KVE0.2|MIAB_METC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 446
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 214/441 (48%), Gaps = 39/441 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 403
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 404 KKRSRELTSVFE----AFTPYLGMEGRVERIWIT-------EIAADGIHLGYVQVLVPST 452
+R L + + A+ G + I + ++A HL VQ P++
Sbjct: 359 TERLAALQDLLDRQRHAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS 416
Query: 453 GNMLGTSALVKITSVGRWSVF 473
+GT V+IT G S+F
Sbjct: 417 --TIGTVVPVRITRAGSNSLF 435
>gi|417908008|ref|ZP_12551775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
VCU116]
gi|341595095|gb|EGS37773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
VCU116]
Length = 514
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 219/447 (48%), Gaps = 38/447 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425
Query: 407 SRELTSVF-----EAFTPYLGM------EGRVERIWITEIAADGIHLGYVQ----VLVPS 451
+ L +A + Y+G EG ++ D + GY V +
Sbjct: 426 LQRLNKKVGEYSQKAMSKYVGKIVTVLCEGASKK-------DDTVLAGYTDKNKLVNFKA 478
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVIK 478
M+G VKI ++S+ G +K
Sbjct: 479 PKEMIGKLVDVKIDEAKQYSLNGTFVK 505
>gi|332710909|ref|ZP_08430845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
gi|332350223|gb|EGJ29827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
Length = 448
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 224/451 (49%), Gaps = 46/451 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++N EAD+ + NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDIGFQWSENPNEADLIVYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + V +V G Q +R+ +++++ G+++
Sbjct: 69 AKRKHQQPDLTLVVAGCVAQQEGEALLRRVPEVDLVMGPQHANRLGDLLDQVFDGNQLVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ + + I GC C+YC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSSISAWVNIIYGCNERCSYCVVPNVRGLEQSRTPEAIRAEMEE 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ G + L + + V+ +P G LR ++
Sbjct: 188 LGRLGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVSNVP--GIERLRFATSH 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + +E L L P V H+P QSG + +L AM R YT +R +++T+ + +P
Sbjct: 246 PRYFVERLIRACHEL--PEVCEHFHIPFQSGDNDILKAMARGYTHQKYRRIINTIRDYMP 303
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA + S VK
Sbjct: 304 DASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLSEEVK 363
Query: 405 ----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-- 456
+R L +V E YL GR+E + + D QV+ + GN L
Sbjct: 364 CDRLQRLNHLVAVKAAERSQRYL---GRIEEVLV----EDQNPKDNTQVMGRTKGNRLTF 416
Query: 457 ---------GTSALVKITSVGRWSVFGEVIK 478
G LVKIT +S+ GE ++
Sbjct: 417 FSGDINHLKGELVLVKITEARAFSLTGERVE 447
>gi|451817753|ref|YP_007453954.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451783732|gb|AGF54700.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 467
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 214/441 (48%), Gaps = 25/441 (5%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G + T GC N ++E MA + GY +TD AD+++INTC+V + S
Sbjct: 32 GKRFVAFATLGCRVNHYETEAMAEKFIQEGYEVTDFENFADVYVINTCSVTNMSDKKSRQ 91
Query: 117 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
+I++ + + ++A GC Q ++ ++EGV +V G + +V + + + +
Sbjct: 92 IISRARRRNQEAIIAAVGCYSQVAPEEVAKIEGVDVVLGTRNKGDIVYYINKAKDEQKSQ 151
Query: 173 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
L L K+ L++ + + +K L I GC C YC + RG S E ++
Sbjct: 152 LMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCVIPYTRGATCSKDPEKVL 210
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
++ + G KE+ LS T +YG D+ N+ ++ ++ E+ +G +RIG P
Sbjct: 211 NEIKNLSQHGFKEIILSGIHTASYGVDLDGNITLI--TLLEEIEKLEGIERVRIGSIEPS 268
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
F + + + ++ C H+ +QSG DA L MNR YT ++ V+ + E +
Sbjct: 269 FFTDEVIGKIKDMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNKIRENLKDA 326
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
I TD+I GFPGETDE+FN+T +K K + HI +F PR GT AA M ++ V K
Sbjct: 327 SITTDVIVGFPGETDEEFNETYEFLKRLKLTKTHIFKFSPRKGTKAADMTNQIDGTVKDK 386
Query: 406 RSRELTSVFEA----FTPYL-GMEGRV---ERIWITEIAADGIHLGYVQVLVPST-GNML 456
RS+ L + + F+ L G E V + + + +G YV+V +P+ NM+
Sbjct: 387 RSKTLIELNDKNEGDFSKSLIGRELDVLLEQEVTNKKDVFEGYTRNYVKVEIPNVDANMI 446
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G KI V G++I
Sbjct: 447 GKIITCKIEEANGEYVVGKLI 467
>gi|292670089|ref|ZP_06603515.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
gi|292648277|gb|EFF66249.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
Length = 472
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 213/439 (48%), Gaps = 37/439 (8%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G +M T GC NQ ++E M G A GY + E A++++INTC+V S
Sbjct: 37 GLRAAFM-TLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKSRQ 95
Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
LI + + VAGC Q +++ L GV +V G ++ ++V+ VE L+ +
Sbjct: 96 LIRRAARTNPDACIAVAGCYAQVAPEEIRALAGVRVVIGTKERAQIVDYVEAALQKNAGV 155
Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ R+ + +P +P R L I GC CT+C +ARG + S
Sbjct: 156 IGAITDIMQARVF--EDIPLRSMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 209
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ + + G EV L+ GAYG D+ P L +A L LR+G
Sbjct: 210 ELSAVAREMHLLTEAGFHEVVLTGIHLGAYGIDLAAR-PTLADACRTALGEAKLRRLRLG 268
Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
+E ++ E++R P + LH+P+Q+GSDAVL AMNR Y + F ++ +
Sbjct: 269 SLES---VELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVR 325
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVP 399
VPG+ ++TDII GFPGET+EDF ++ ++ F ++H+ + PR GTPAA R +VP
Sbjct: 326 RAVPGVAVSTDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVP 385
Query: 400 SAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLG----YVQVL--VPS 451
AV K+R+ + ++ E + G V + E A DG+ G Y++V P
Sbjct: 386 PAVRKERAARMQALAEELAQDYHRAALGSVTEVLF-ETAEDGVTNGLTETYIRVYTDAPV 444
Query: 452 TGNMLGTSALVKITSVGRW 470
L LV++ G W
Sbjct: 445 ARGALVPMRLVRLYRDGVW 463
>gi|434394557|ref|YP_007129504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
gi|428266398|gb|AFZ32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
Length = 453
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 225/452 (49%), Gaps = 50/452 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPYQADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G+++
Sbjct: 69 AKRKHEHPELTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLQDLLEQVFAGNQIVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGRQGFKEVTLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GIERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL M+R YT +R ++DT+
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKQMSRGYTQEKYRRIIDTIRRY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVDDIGFDHLNTAAYSPRPGTPAAVWENQLSEE 361
Query: 403 VK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML 456
VK +R L ++ E YL GR+E + + D QV+ + GN L
Sbjct: 362 VKSDRLQRLNHLVAIKASERSQRYL---GRIEEVLV----EDQNPKDPAQVMGRTRGNRL 414
Query: 457 -----------GTSALVKITSVGRWSVFGEVI 477
G VKIT + +S+ GEV+
Sbjct: 415 TFFPGNIAELKGKLVQVKITEIRAFSLTGEVV 446
>gi|333978768|ref|YP_004516713.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822249|gb|AEG14912.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 445
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 209/398 (52%), Gaps = 23/398 (5%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
+ +IP E I TFGC N DSE +AG L + GY ++ EAD+ L+NTC V+ +
Sbjct: 1 MKERIPTYEVI---TFGCQMNDHDSEVIAGMLESLGYEPAASTGEADVILVNTCCVRETA 57
Query: 111 QSAMDTLI---AKCKSAKKPLVV--AGCVPQG---SRDLKEL--EGVSIVGVQQIDRVVE 160
++ + L+ A K K L++ AGC+ Q +R +K + I+G + R+ E
Sbjct: 58 ENKIYGLLGRLAHLKDKKGDLIIGIAGCMTQQPGVARKIKNRFPQVDLILGTHNLHRLPE 117
Query: 161 VVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
++ + + E + + + +LP R ++ + I GC CTYC + RG
Sbjct: 118 LLLQARECRERVMEVWDQAGEIVENLPIRRASRVKAWVNITYGCNNFCTYCIVPYVRGRE 177
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTM 277
S E ++ +R ++ +G +EV L ++ +YG+D+ G L A V ++P G
Sbjct: 178 RSRRPEDILNEIRQLVQEGYREVTLLGQNVNSYGKDLPGPTSFARLLAEVDQIP--GLWR 235
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+R ++P + L I + R P V +H+PVQ+GS+ +L MNR Y + +V+
Sbjct: 236 IRFTTSHPRDFTQEL--IDTIARCPHVCEHIHLPVQAGSNRILKLMNRGYDRDYYLDLVE 293
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 396
+ +PG+ I TDI+ GFPGET+EDF QT++L++ +F + PRPGTPAAR+ +
Sbjct: 294 RIRRAIPGVAITTDIMVGFPGETEEDFAQTMDLVERVRFDGAFTFVYNPRPGTPAARLPE 353
Query: 397 KVPSAVVKKRSRELTSVFEAFT--PYLGMEGRVERIWI 432
+VP + +R ++L T + GRVE++ +
Sbjct: 354 QVPDGIKSERIQKLIERQNEITLAHNQALVGRVEQVLV 391
>gi|393200264|ref|YP_006462106.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
Length = 511
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 214/439 (48%), Gaps = 24/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD----- 115
Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 66 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125
Query: 116 TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K+ + + V GC+ Q ++ LK+ + V +V G I R+ ++ + E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL I + + + +H+PVQSGS+ +L M R+YT F +VD + +PG+ +
Sbjct: 305 DDHL--IKVLAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDKIKAAIPGVTL 362
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII G+P ET+E F +T++L ++ F + PR GTPAA+M V K R
Sbjct: 363 TTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMVDNVTEEEKKDRL 422
Query: 408 RELTSVFEAFTPYL--GMEGRVERIWI--TEIAADGIHLGYVQ----VLVPSTGNMLGTS 459
L +V ++ G+EG+ + + + D + GY + V + +G
Sbjct: 423 HRLNAVVSEYSAKALKGLEGQTVEVLVEGSSKRRDDVLAGYTRKNRLVNFKADPKFIGKL 482
Query: 460 ALVKITSVGRWSVFGEVIK 478
VKI +S+ GE ++
Sbjct: 483 VNVKILEAKSYSLMGEFVE 501
>gi|315651392|ref|ZP_07904417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486351|gb|EFU76708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 485
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 24/384 (6%)
Query: 43 NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
N + TG++ K P + + TFGC N DSE ++G LS GY + E+AD+ L
Sbjct: 31 NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 87
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVG 151
NTCTV+ + + + + K +K+ + + GC+ Q + ++++++ + G
Sbjct: 88 NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 147
Query: 152 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
I ++ E++ + LK + V ++ + LP R+ F + I GC C+YC
Sbjct: 148 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 207
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 267
+ RG S E + ++ ++ADGVKEV L ++ +YG+ D N +LL+ +
Sbjct: 208 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVA 267
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
DG LR +P + + + E+ + + C + LH+P+QSGS A+L MNR Y
Sbjct: 268 K---IDGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 322
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T + +V + +P + + TDII GFPGET+EDF T++++K+ ++ + R
Sbjct: 323 TKESYLDLVKRIKAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKR 382
Query: 388 PGTPAARM-KKVPSAVVKKRSREL 410
GTPAA+M +++ ++K R L
Sbjct: 383 SGTPAAKMEEQIDPDIIKDRFDRL 406
>gi|315635668|ref|ZP_07890931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
gi|315479965|gb|EFU70635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
Length = 436
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 217/442 (49%), Gaps = 26/442 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSA 113
+ + ++++T GC N +DS+++ +L GY T N E+AD+ +INTC+V+
Sbjct: 1 MSSNKKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQK 60
Query: 114 MDTLIAKCKSAKK---PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK 167
+ + I + KK + V GC G +K V +VG + I ++ +VV+ +K
Sbjct: 61 LFSEIGQFNKKKKEGAKIGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVD--VK 118
Query: 168 GH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
G EV + + + + + NK+ + I+VGC CTYC RG S E +
Sbjct: 119 GAVEVSIDNDE--STYEFSTAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEISIPPEMI 176
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V +VR + G EV L ++ +YGR + + + RI T+P
Sbjct: 177 VEQVRKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKLLQDVSKIDGLERIRFTSPH 236
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + I E ++P + +H+P+QSGS +VL AM R Y+ F + ELVP +
Sbjct: 237 PLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKMRELVPNL 296
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVK 404
+I TDII FPGET EDF T++++++ KF Q+ ++ PRPGT A + K++P +
Sbjct: 297 RITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKELPDEIGS 356
Query: 405 KRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNM 455
+R L + E YL + G I + + +G G Y+QV + +
Sbjct: 357 QR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNGEVCGYTDNYLQVFAKGSDEL 413
Query: 456 LGTSALVKITSVGRWSVFGEVI 477
LG VKIT V R S+ GEV+
Sbjct: 414 LGKFVNVKITDVTRTSLKGEVV 435
>gi|75760978|ref|ZP_00740984.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491542|gb|EAO54752.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 515
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 221/437 (50%), Gaps = 35/437 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 379
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 439
Query: 408 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALV 462
+ L ++ E + Y G I E+ DG +VL T T+ LV
Sbjct: 440 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYT----RTNKLV 487
Query: 463 KITSVGRWSVFGEVIKI 479
V S+ G+++K+
Sbjct: 488 NF--VASKSLIGQLVKV 502
>gi|427706129|ref|YP_007048506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
gi|427358634|gb|AFY41356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
Length = 454
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 227/451 (50%), Gaps = 44/451 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K + A LVVAGCV Q G L+ + + +V G Q +R+ +++E +G++V
Sbjct: 69 AKRKHEKADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ + RR+ K + + GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMVE 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ G +L + + V ++P G LR ++
Sbjct: 188 LGRQGYKEITLLGQNIDAYGRDLPGVTPEGRHLHTFTDLLYYVHDVP--GVERLRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ + +
Sbjct: 246 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRKYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPGTPAA + S V
Sbjct: 303 PDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWENQLSEEV 362
Query: 404 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
K +R L ++ +A GR+E + + + + QV+ + GN L
Sbjct: 363 KSDRLQRLNHLVNI-KAAARSQRYFGRIEEVLVEDQNSKDP----TQVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVIKI 479
G VKIT V +S+ GE I++
Sbjct: 418 TGDINELKGQLVKVKITEVRAFSLTGEPIEV 448
>gi|425436058|ref|ZP_18816499.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
gi|389679291|emb|CCH91904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
Length = 446
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/449 (30%), Positives = 218/449 (48%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRRIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
GT VKIT V +S+ G +
Sbjct: 418 TGNIEELRGTFVKVKITEVRPFSLTGVIF 446
>gi|21224132|ref|NP_629911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
coelicolor A3(2)]
gi|81344644|sp|O69963.1|MIAB_STRCO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2995295|emb|CAA18324.1| conserved hypothetical protein SC4H2.08 [Streptomyces coelicolor
A3(2)]
Length = 505
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 190/375 (50%), Gaps = 16/375 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
GT T ++T+GC N DSE ++G L GY A +AD+ + NTC V+ + + +
Sbjct: 12 GTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKL 71
Query: 115 DTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
+ K A +P + V GC+ Q RD +K V +V G I ++ ++E
Sbjct: 72 YGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131
Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
++ V ++A+GV E+ L ++ AYG DIG + + A DG +R +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNIDGLERVRFTSPH 250
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + + IA + P LH+P+QSGSD VL AM R Y + +++ + +P
Sbjct: 251 PRDFTDDV--IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIP 308
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P AVV
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVV 368
Query: 404 KKRSRELTSVFEAFT 418
++R L ++ E +
Sbjct: 369 QERYERLVALQEEIS 383
>gi|433637940|ref|YP_007283700.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
gi|433289744|gb|AGB15567.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
Length = 449
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 208/410 (50%), Gaps = 27/410 (6%)
Query: 53 PKIPGTETIY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
P+ P Y ++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++
Sbjct: 27 PQYPTNMARYHIETYGCTSNRGESRQIERRLRDAGHHRVDGVDEADVAILNTCTVVEKTE 86
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
M + L V GC+ L + E GV + V E + E
Sbjct: 87 RNMLRRAEELADETADLYVTGCMA-----LAQGEEFVNAGVDADVLHWDEVPEAVTNGEC 141
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
P LD V ILPI GC+ C+YC TKHA G + S ++E V + R
Sbjct: 142 PTTTPDAEPILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKAR 194
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ ++ +DTG YG D G L LL I A +G +RIGM NP +
Sbjct: 195 ALVHAGAKELRITGQDTGVYGWDDGERKLHRLLERICA---IEGDFRVRIGMANPKGVHG 251
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+++A V + +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++
Sbjct: 252 IREKLASVFADNEELYDFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDDALEYWTLS 311
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
TD I GFP ETD D Q++ L++E + ++++++F RPGT AA MK + + K+RS E
Sbjct: 312 TDFIVGFPTETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSSE 371
Query: 410 LTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPS 451
++ V EA+ +G E R + + + E D + Y Q++V S
Sbjct: 372 MSEVKRELVREAYADMVG-ETREDVLVVEEGTGDSVKCRDSAYRQLIVQS 420
>gi|257056745|ref|YP_003134577.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Saccharomonospora viridis DSM 43017]
gi|256586617|gb|ACU97750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharomonospora viridis
DSM 43017]
Length = 494
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 188/370 (50%), Gaps = 20/370 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GY+L E+AD+ ++NTC V+ + + +
Sbjct: 2 TRTYTIRTFGCQMNVHDSERLAGQLEEAGYSLAAEGEQADVVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK + V GC+ Q R ++ V +V G + + ++E
Sbjct: 62 LGHLRAAKAANPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNLGSLPVLLERARHNA 121
Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E ++ + L LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEIVEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 285
V ++A+GV EV L ++ +YG + G LL + + DG +R +P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRYAFGKLLRSCGS---IDGLERVRFTSPHP 238
Query: 286 P-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
F + + +AE P V LH+P+QSGSD VL AM R Y + F +++D + +P
Sbjct: 239 AAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSARFLSILDKVRAAMP 295
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
I TDII GFPGET+EDF QT+ ++++ +F Q+ PRPGTPAA M +VP VV
Sbjct: 296 DAAITTDIIVGFPGETEEDFQQTLEVVRQARFSSAFTFQYSPRPGTPAAEMPDQVPKEVV 355
Query: 404 KKRSRELTSV 413
++R L +
Sbjct: 356 QERYDRLVEL 365
>gi|422343558|ref|ZP_16424486.1| MiaB-like tRNA modifying enzyme [Selenomonas noxia F0398]
gi|355378865|gb|EHG26045.1| MiaB-like tRNA modifying enzyme [Selenomonas noxia F0398]
Length = 435
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 210/431 (48%), Gaps = 36/431 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M G A GY + E A++++INTC+V S LI +
Sbjct: 7 TLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKSRQLIRRAART 66
Query: 125 KKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----------- 169
+ VAGC Q +++ L GV +V G ++ ++V+ VE L+ +
Sbjct: 67 NPDACIAVAGCYAQVAPEEIRALAGVRVVIGTKERAQIVDYVEAALQKNAGVIGTITDIM 126
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ R+ + +P +P R L I GC CT+C +ARG + S + ++
Sbjct: 127 QARVF--EDIPLRSMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVARE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ + G EV L+ GAYG D+ P L +A L LR+G +
Sbjct: 181 MHLLTEAGFHEVVLTGIHLGAYGIDLAAR-PTLADACRTALGEAKLRRLRLGSLES---V 236
Query: 290 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E ++ E++R P + LH+P+Q+GSDAVL AMNR Y + F ++ + VPG+ +
Sbjct: 237 ELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVRRAVPGVAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRS 407
+TDII GFPGET+EDF ++ ++ F ++H+ + PR GTPAA R +VP AV K+R+
Sbjct: 297 STDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVPPAVRKERA 356
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLG----YVQVL--VPSTGNMLGTS 459
+ ++ E + G V + E A DG+ G Y++V P L
Sbjct: 357 ARMQALAEELAQDYHRAALGSVTEVLF-ETAEDGVTNGLTETYIRVYTDAPVARGALVPM 415
Query: 460 ALVKITSVGRW 470
LV++ G W
Sbjct: 416 RLVRLYRDGVW 426
>gi|425451699|ref|ZP_18831519.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
gi|389766860|emb|CCI07600.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
Length = 446
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 217/446 (48%), Gaps = 44/446 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDHQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFG 474
GT VKIT V +S+ G
Sbjct: 418 TGNIEELRGTFVKVKITEVRPFSLTG 443
>gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
Length = 452
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/450 (30%), Positives = 224/450 (49%), Gaps = 48/450 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLILYNTCSIRDSAEHKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 AGRKRVEPELTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ K + + GC CTYC + RG S T +++ +
Sbjct: 129 TDAVHIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGIEQSRTPKAIRAEMEE 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G N L + + V+++P G +R ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQYTLTDLLYYVSDVP--GIERIRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM R YT +R +++T+ + +
Sbjct: 246 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIETIRQYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I+ D I GFPGE++ F +T+NL+ + +F V+ + + PRPGTPAA S V
Sbjct: 303 PDASISADAIVGFPGESEAQFEKTLNLVVDMRFDLVNTAAYSPRPGTPAALWDTQLSEEV 362
Query: 404 K-KRSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML- 456
K R + L V E YL GR+E + + D QV+ GN L
Sbjct: 363 KADRLQRLNHVVTQTAMERSQRYL---GRIEEVLV----EDQNQKDATQVMGRGRGNRLT 415
Query: 457 ----------GTSALVKITSVGRWSVFGEV 476
G VKIT V +S+ G++
Sbjct: 416 FLRGNIEELRGQLVQVKITDVRAFSLTGDL 445
>gi|428774566|ref|YP_007166354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
gi|428688845|gb|AFZ48705.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
Length = 451
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 218/450 (48%), Gaps = 42/450 (9%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ TFGC N++DSE MAG L GY T++ EA I + NTC+++ ++ + + + K
Sbjct: 10 ITTFGCQMNKADSERMAGILETMGYDFTEDPNEASIIVYNTCSIRDNAEQKVYSYLGKQA 69
Query: 123 SAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
K LVVAGCV Q G + L+ + + I+G Q +R+ ++++ G+++
Sbjct: 70 KRKHKEGDLTLVVAGCVAQQEGEQLLRRVPEIDLIMGPQHANRLDSLLDQVFAGNQIVAT 129
Query: 175 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 130 EPVHIFE-DITKPRRESSVSAWVNIIYGCNERCSYCVVPNTRGVEQSRTPEAIKAEIEEL 188
Query: 234 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 189 ARQGYKEITLLGQNIDAYGRDLPGTTETGRHKHTLTDLLYFIHDVEGIERIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L + L P V H+P QSG + VL AM R YT +R +++ + +P
Sbjct: 249 FTERLIKACHEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTHERYRDIINKIRGYMPHAA 306
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK--- 404
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRP TPAA + S VK
Sbjct: 307 ISADAIVGFPGETEEQFENTLRLVEDIGFDQLNTAAYSPRPQTPAAEWENQLSEEVKGDR 366
Query: 405 -KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML----- 456
R L SV E YL G++E++ + ++ QV+ + GN L
Sbjct: 367 LARLNHLVSVKAAERSQRYL---GKIEQVLVEDVNPKDA----TQVVGRTDGNRLTFFAG 419
Query: 457 ------GTSALVKITSVGRWSVFGEVIKIL 480
G VKIT V +S+ GE + ++
Sbjct: 420 DINQLKGKIVPVKITQVRAFSLTGEALTLV 449
>gi|312135098|ref|YP_004002436.1| RNA modification enzyme, miab family [Caldicellulosiruptor
owensensis OL]
gi|311775149|gb|ADQ04636.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
owensensis OL]
Length = 434
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 128/442 (28%), Positives = 229/442 (51%), Gaps = 34/442 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K
Sbjct: 3 IAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKK 62
Query: 121 CK--SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K S + +VV GC PQ +++++ + I+ G + ++V+ V+E L+ ++
Sbjct: 63 AKKLSPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLE-------NK 115
Query: 177 KKLPALD-------LPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVES 225
KK+ A+D +++ ++F E + I GC C+YC +ARG + S ++ES
Sbjct: 116 KKIVAIDEGYKRGTFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLES 175
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ VR ++++G KE ++ + AYG+D+ + L++ I +G +R+ P
Sbjct: 176 IEEEVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLEP 234
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E I+ +L + LH+ +QSGSD +L MNR YT + ++ +VD + E
Sbjct: 235 LIMSEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKFMNRHYTTAQYQDIVDRIKEKWDD 292
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ GT A M +V S +
Sbjct: 293 VAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVDSKEKE 352
Query: 405 KRSRELTSV-----FEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPSTGNML- 456
+RS+ + V ++ ++G +E +E+ + +G Y++ +V ++
Sbjct: 353 RRSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTVVRKNHFIVP 412
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
G VKIT V GE+I+
Sbjct: 413 GEIYKVKITQAYEQYVKGEIIQ 434
>gi|342213682|ref|ZP_08706404.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
gi|341597707|gb|EGS40249.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
Length = 433
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 190/373 (50%), Gaps = 14/373 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G GY EEA I++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMKGLFIKAGYTPVGFDEEAAIYVINTCSVTNMGEKKSRQLI 61
Query: 119 --AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
AK ++ + +VV GC Q + + + ++GV++V G +++VE+VE E
Sbjct: 62 RQAKRRNPEAFIVVTGCYAQLAPEVISAIDGVNLVIGTANRNKIVELVENIPSTEEQISI 121
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L K + I GC C++C + RG L S +E +V
Sbjct: 122 VRNVMEESTFEEMPLFGNEIEKCRAFMKIQEGCNNFCSFCIIPYTRGKLKSRKIEDIVEE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++A G KEV L+ G YG ++ P L + L DG +R G +
Sbjct: 182 AKRLVAYGYKEVVLTGIHLGNYGIELP-ERPTLGRVVRELLTIDGLERIRFGSIESVEVS 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E L E+ + +P V LH+P+Q+GSD VL +MNR Y L ++ +V L +P + I
Sbjct: 241 EELIEL--MATNPRVCPNLHLPLQAGSDPVLKSMNRHYNLQQYKDLVKYLRSRIPNLSIT 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TDII GFPGETDE F +T+ +KE F +H + R GTPAA+M+ +VP AV K R
Sbjct: 299 TDIIAGFPGETDELFEETMRTVKEVGFTHIHAFPYSIREGTPAAKMEDQVPEAVKKTRVA 358
Query: 409 ELTSV-FEAFTPY 420
L + E F Y
Sbjct: 359 LLNQLGKEGFKAY 371
>gi|390440335|ref|ZP_10228674.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis sp. T1-4]
gi|389836262|emb|CCI32800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis sp. T1-4]
Length = 446
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 217/449 (48%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KE+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + VL AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDDQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTGGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
G VKIT V +S+ G +
Sbjct: 418 TGNIEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|345005921|ref|YP_004808774.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
gi|344321547|gb|AEN06401.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
Length = 416
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 214/434 (49%), Gaps = 48/434 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D + AD+ ++N+CTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIESALRDAGHYRVDGPKAADVAILNSCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L+V GC+ ++ Q+ D G + ++LH ++P
Sbjct: 65 AEETADLIVTGCM-------------ALAQGQEFDEA---------GLDAQVLHWDEVPE 102
Query: 182 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
P V + + ILPI GC+ C+YC TK A G + S ++E V + R
Sbjct: 103 AVTNGECPTPGPGVEPVLDGVIGILPIARGCMSNCSYCITKQATGRIDSPSIEENVEKAR 162
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ ++ +DTG YG D G +LP LL+ I +G +R+GM NP I
Sbjct: 163 ALVHAGAKELRVTGQDTGVYGWDDGERDLPELLDRICN---IEGEFRVRLGMANPGGIHG 219
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+E+A+V R+ +Y+F+H PVQSGS+ VL M R++ + F +++T + ++
Sbjct: 220 IREELADVFARNEKLYTFIHAPVQSGSNEVLEEMRRQHRVDKFLEIIETFDTKLDHWTLS 279
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409
TD I GFP ETD D Q++ L +E + +V+I++F RPGT AA MK + K RS+
Sbjct: 280 TDFIVGFPTETDADHEQSMALFRETRPEKVNITRFSKRPGTDAAEMKGLGGQTKKDRSKA 339
Query: 410 LTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVP-STGNMLGTSA 460
++ V EA+ +G V + + E D + Y Q++V +T + L
Sbjct: 340 MSELKHEIVAEAYEELIGTTREV--LVVEEGTGDSVKCRDSAYRQLIVQNATEHDLEPGE 397
Query: 461 LVKITSVGRWSVFG 474
++ +V+G
Sbjct: 398 FAEVEVTSHQTVYG 411
>gi|299535293|ref|ZP_07048616.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
fusiformis ZC1]
gi|424737164|ref|ZP_18165620.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
fusiformis ZB2]
gi|298729275|gb|EFI69827.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
fusiformis ZC1]
gi|422948996|gb|EKU43372.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
fusiformis ZB2]
Length = 517
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 220/443 (49%), Gaps = 24/443 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD--- 115
++ ++ T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 71 KSYHIMTYGCQMNEHDTEVMAGIFMQLGYTPTEVIEEADVVLLNTCAIRENAENKVFGEL 130
Query: 116 --TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L K K+ + + V GC+ Q ++ L+ V +V G I R+ +++E
Sbjct: 131 GFLLKYKRKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAYMS 190
Query: 169 HE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
E + + ++ +LPK R + I GC CTYC + RG S E +
Sbjct: 191 KEMVIEVWSKEGDVIENLPKKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEI 250
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 251 IAEVRELAAAGYKEIMLLGQNVNAYGKDFE-DIDYRLGDLMDELRKIDIPRIRFTTSHPR 309
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+HL E+ + + + +H+PVQSGS+ VL M R+YT F +VD + +P +
Sbjct: 310 DFDDHLIEV--LAKRGNLVEHIHLPVQSGSNDVLKIMARKYTREHFLGLVDRIKAAIPEV 367
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
+ TDII G+P ET+E F +T++L +E F + PR GTPAA+M VP V K+
Sbjct: 368 TLTTDIIVGYPNETEEQFEETLSLYREVGFDAAFTYIYSPREGTPAAKMIDNVPEEVKKE 427
Query: 406 RSRELTSVFEAFT--PYLGMEGRVERIWI--TEIAADGIHLGYVQ----VLVPSTGNMLG 457
R + L V ++ + G+V + + T D + GY + V + ++G
Sbjct: 428 RLQRLNEVVGEYSRKALERLNGQVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKAPAEVIG 487
Query: 458 TSALVKITSVGRWSVFGEVIKIL 480
VKIT +S+ GE ++++
Sbjct: 488 QLVKVKITETTSYSLTGEFVEVV 510
>gi|427406487|ref|ZP_18896692.1| MiaB-like tRNA modifying enzyme [Selenomonas sp. F0473]
gi|425707917|gb|EKU70958.1| MiaB-like tRNA modifying enzyme [Selenomonas sp. F0473]
Length = 434
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 225/441 (51%), Gaps = 35/441 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ ++E M G A GY + E AD++++NTC+V S LI +
Sbjct: 4 VAFMTLGCKVNQFETETMEGLFRARGYEVVPFEERADVYVVNTCSVTHLSDRKSRQLIRR 63
Query: 121 CK--SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE------ 170
+ + + V GC Q +++ LEGV +V G ++ ++V+ VEE L+ +
Sbjct: 64 AARTNPRACIAVCGCYAQVAPEEIRALEGVRVVIGTKERAQIVDYVEEALRAEDHVAGRI 123
Query: 171 ---VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + +P +P R L I GC CT+C +ARG + S T+ ++
Sbjct: 124 TDIMQARTFEDIPLAYMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRTLPAVR 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
++A G +E+ L+ GAYG D+ P L +A L G LR+
Sbjct: 180 RETERLVAAGFREIVLTGIHLGAYGIDLA-ERPTLADACRTALSLPGLGRLRLSSLES-- 236
Query: 288 ILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+E ++ E++R P + LH+P+Q+GSD VL+AMNR Y + F +++ + VPG+
Sbjct: 237 -VELSADLLELIRTEPRFAAHLHLPLQAGSDGVLAAMNRHYDTAAFARLIEDVRRAVPGV 295
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
++TD+I GFPGET+ F + ++ I+ F ++H+ + PR GTPAAR ++P+ V K+
Sbjct: 296 AVSTDVIVGFPGETEAQFAEGMDFIRRMGFARMHVFPYSPRRGTPAARRPDQIPAPVRKE 355
Query: 406 RSRELTSVFEAFTP---YLGMEGRVERIWITEI--AADGIHLGYVQVL--VPST-GNMLG 457
R + ++ + ++ E ++ T ADG+ Y++V P T GN++
Sbjct: 356 RVARMQALAAELSENCRRAALDTAAEVLFETTENGIADGLTDTYIRVYTDAPVTRGNLVP 415
Query: 458 TSALVKITSVGRWSVFGEVIK 478
+++T + R ++GE ++
Sbjct: 416 ----MRLTRLYRDGIWGERVR 432
>gi|187932620|ref|YP_001885098.1| hypothetical protein CLL_A0897 [Clostridium botulinum B str. Eklund
17B]
gi|187720773|gb|ACD21994.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 434
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 192/360 (53%), Gaps = 16/360 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + GY++TD + AD+++INTCTV + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSDAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVLEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+G + ++ +++ ++ +G +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGTGVTLI--SLLEDIEKIEGIDRVRIGSIEPAFFTDEVIN 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ ++ C + H+ +QSGSDA L MNR YT ++ V TL + + + I TD+I
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
GFPGET+E+FN+T +K+ K +VH+ ++ PR GT AA M ++ + KRS+ L+ +
Sbjct: 302 GFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGNIKDKRSKILSEL 361
>gi|411120095|ref|ZP_11392471.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoriales cyanobacterium JSC-12]
gi|410710251|gb|EKQ67762.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoriales cyanobacterium JSC-12]
Length = 454
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 224/454 (49%), Gaps = 50/454 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ D E A++ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEKMGFEWADEPENANLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + + +V G Q +++ ++E+ G++V
Sbjct: 69 AKRKQEQPDLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANQLESLLEQVFNGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TDPVHIME-DITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGVKVEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P + H+P QSG + VL AM R YT +R ++D +
Sbjct: 245 HPRYFTERLIRACAEL---PKLCEHFHIPFQSGDNEVLRAMGRGYTHERYRRIIDMIRSY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+ F T+ L++E F Q++ + + PRPGTPAA S
Sbjct: 302 IPDAAISGDAIVGFPGETEAQFENTLKLVEEVGFDQLNTAAYSPRPGTPAAVWDNQLSDE 361
Query: 403 VK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML 456
VK +R L ++ E YL GR+E + + + H QV+ + N L
Sbjct: 362 VKSDRLQRLNHLVAIKAAERSQRYL---GRIEEVLVEDRNEKAPH----QVMGRTRSNRL 414
Query: 457 -----------GTSALVKITSVGRWSVFGEVIKI 479
G V+IT +S+ GE +++
Sbjct: 415 TFFPGEIHQLQGQLVNVRITEARAFSLTGEAVEV 448
>gi|375101866|ref|ZP_09748129.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora cyanea NA-134]
gi|374662598|gb|EHR62476.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora cyanea NA-134]
Length = 498
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/372 (33%), Positives = 190/372 (51%), Gaps = 24/372 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GYAL + E+ D+ ++NTC V+ + + +
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALATDGEDPDVVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK KP + V GC+ Q R +K V +V G I + ++E
Sbjct: 62 LGHLRAAKTSKPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNISSLPVLLERARHNA 121
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILESLETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 285
V ++A+GV EV L ++ +YG + G +A L GS + R+ T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDR-----HAFGKLLRACGSVEGLERVRFTSP 236
Query: 286 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
F + + +AE P V LH+P+QSGSD VL AM R Y + F +++D +
Sbjct: 237 HPAAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLSILDRVRAA 293
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
+P I TDII GFPGET+EDF QT+ ++++ +F Q+ RPGTPAA M +VP
Sbjct: 294 MPDAAITTDIIVGFPGETEEDFEQTLQVVRQARFSSAFTFQYSQRPGTPAADMPGQVPKE 353
Query: 402 VVKKRSRELTSV 413
VV++R L +
Sbjct: 354 VVQERYDRLVEL 365
>gi|138896073|ref|YP_001126526.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
gi|196248967|ref|ZP_03147667.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
gi|134267586|gb|ABO67781.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
gi|196211843|gb|EDY06602.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
Length = 449
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 226/456 (49%), Gaps = 29/456 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESHADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VRLL 174
+ ++ + V GC Q S ++ + GV IV G Q ++++ VE+ + + + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYVEQFQRERQPINAV 122
Query: 175 HR----KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
H + +D+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
R ++A G KE+ L+ TG YG D+ N LL + ++P G +RI +
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFAALLRDLDEQVP--GLKRIRISSIEASQLT 239
Query: 290 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ +VLR + LH+P+QSGS+ VL M R+YT+ F + L E+ P + +
Sbjct: 240 D---EVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLARLREVFPELAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
+D+I GFPGET+E+F +T N I+E +F ++H+ + R GTPAARM ++ R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPDQIDEETKHDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAAD--GIHLG----YVQVLVPSTGNMLGTS 459
R L ++ + EG+V + E + G+++G Y++V P+T M+G
Sbjct: 357 RRLIALSDQLAKEYASRFEGQVLEVIPEEHDKEEPGMYIGYTDNYLKVRFPATEEMVGEL 416
Query: 460 ALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKIT G GE +++ V D+ + ++SS
Sbjct: 417 VKVKITKAGYPYNEGEFVRV---VSDEAVRSVKLSS 449
>gi|428300349|ref|YP_007138655.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
gi|428236893|gb|AFZ02683.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
Length = 454
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 141/454 (31%), Positives = 226/454 (49%), Gaps = 50/454 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA++ L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFEWSEDPHEANLVLFNTCSIRDNAEHKVYSYLGRL 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LV+AGCV Q G L+ + + +V G Q +R+ +++++ G++V +
Sbjct: 69 ARRKHDEPDLTLVMAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLQQVFDGNQV-V 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 128 ATEAVYIMEDITKPRRDSSVTSW-VNVIYGCNERCTYCVVPGVRGVEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G NL L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + VL M+R YT +R ++D + E
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+ F T+ L+ + F V+ + + PRP TPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVADIGFDLVNTAAYSPRPNTPAALWDEQLSEE 361
Query: 403 VKK-RSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML 456
+K+ R ++L + E YL GRVE I + E + QV+ + GN L
Sbjct: 362 IKQDRLQQLNHLINVTASERSHRYL---GRVEEILVEEQNQKYAN----QVMGRTRGNRL 414
Query: 457 -----------GTSALVKITSVGRWSVFGEVIKI 479
G VKIT + +S+ GE +++
Sbjct: 415 TFFDGDINELRGKVVKVKITEIRAFSLTGEAVEV 448
>gi|331697733|ref|YP_004333972.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Pseudonocardia dioxanivorans CB1190]
gi|326952422|gb|AEA26119.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Pseudonocardia dioxanivorans CB1190]
Length = 490
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 198/396 (50%), Gaps = 30/396 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T + ++T+GC N DSE MAG L + GY + +++AD+ ++NTC V+ + + +
Sbjct: 2 TRSYTIRTYGCQMNVHDSERMAGLLESAGYVRAEATDDADVVVLNTCAVRENADNKLYGN 61
Query: 118 IAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ + A +P + V GC+ Q RD + + V +V G + + ++E
Sbjct: 62 LGHLAPRKAARPGMQIAVGGCLAQKDRDTIVAKAPWVDVVFGTHNVGALPTLLERARHNE 121
Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ R+ L LP R + + + I+VGC CT+C RG ++
Sbjct: 122 RAEVEIRESLEVFPSTLPARRESAYAGWVSISVGCNNTCTFCIVPSLRGKERDRRPGDVL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP 285
V + ADGV EV L ++ AYG + G LL A D + R+ T+P
Sbjct: 182 AEVSALAADGVLEVTLLGQNVNAYGVEFGDREAFSKLLRAC-----GDVEGLERVRFTSP 236
Query: 286 PFILEHLKE-----IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
H +E IA + P V LH+P+QSGSD VL M R Y S F ++D +
Sbjct: 237 -----HPREFSSDVIAAMAETPNVCPQLHMPLQSGSDRVLREMRRSYRSSRFLAILDEVR 291
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 399
+P I+TDII GFPGET+EDF T+++++ +F Q Q+ PRPGTPAA + ++P
Sbjct: 292 GSIPDAAISTDIIVGFPGETEEDFRATLDVVERARFAQAFTFQYSPRPGTPAATLPDQLP 351
Query: 400 SAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWIT 433
AVV++R L + E ++ +EGRV + ++
Sbjct: 352 KAVVQERYERLVELQERISWEQNRALEGRVVEVLVS 387
>gi|188586121|ref|YP_001917666.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|229890572|sp|B2A3X6.1|MIAB_NATTJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|179350808|gb|ACB85078.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 451
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/444 (28%), Positives = 217/444 (48%), Gaps = 34/444 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y TFGC N+ DSE +AG L G+ + EEAD+ +INTC V+ ++ + I
Sbjct: 12 FYTLTFGCQMNEHDSEVLAGMLDQMGFEKAASEEEADLLIINTCAVREKAEQKVLGKIGT 71
Query: 121 CKSAK--KP---LVVAGCVPQ----GSRDLKELEGVSIV-GVQQIDRVVEVVEETL-KGH 169
+ K KP + + GC+ Q ++ ++ V I+ G I+R +++E + KG
Sbjct: 72 LRYLKENKPDMKIAIGGCMVQQEHVANKIYRDFTHVDIIFGTHNINRFPQLLEHVMQKGK 131
Query: 170 EVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V+ + + + LP R + + I+ GC C YC + RG S E +
Sbjct: 132 RVKEISQDDSQVFENLPHKREDSIKAWVVISYGCDNYCKYCIVPYVRGQQRSRDPEHIKY 191
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP- 286
V + +G+KE+ L ++ +YG+D+ N I ++ EL +G +R ++P
Sbjct: 192 EVEKLAKEGLKEITLLGQNVNSYGKDLDQN--ISFTNLLEELSKIEGIERIRFMTSHPKD 249
Query: 287 ---FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
++ LKE ++ H H+PVQ+GS+ +L M R YT + +V+ + +
Sbjct: 250 FDKELITTLKESNKICEH------FHLPVQAGSNKILKKMGRGYTREHYVDIVNDIRAEL 303
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
P I TDII G+PGE +EDF +T++L++ KF + R GTPAA M ++V
Sbjct: 304 PNASITTDIIVGYPGEEEEDFQETLDLVQNVKFDSAFTFVYSKRSGTPAAEMAEQVDEQT 363
Query: 403 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL--GYVQ----VLVPSTGN 454
K R ++L SV + + +E V+RI + ++ + + G + V P
Sbjct: 364 KKGRIQKLISVQQEISEQRNKDLENTVQRILVEGVSKNNEDMLSGRTRTDKLVHFPGDKE 423
Query: 455 MLGTSALVKITSVGRWSVFGEVIK 478
++G VKIT W+++GE+ +
Sbjct: 424 LIGELVDVKITRGHSWNLYGEIFE 447
>gi|401679764|ref|ZP_10811688.1| MiaB-like protein [Veillonella sp. ACP1]
gi|400218891|gb|EJO49762.1| MiaB-like protein [Veillonella sp. ACP1]
Length = 431
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 13/367 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G Y D +ADI++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 61
Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
K K + ++V GC Q D + ++GV++V G ++VE+VE+ + +
Sbjct: 62 RKAKRQNQDAYVIVTGCYAQLDADAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 121
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L +K + I GC C +C + RG L S V+ +V
Sbjct: 122 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G E+ L+ G YG ++ P L + + A L +R G +
Sbjct: 182 AKRLVEHGFHEIVLTGIHLGNYGVELP-ERPTLADVVKALLEIPNLHRIRFGSIESVEVS 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I
Sbjct: 241 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
TDII GFP ETDEDF++T+N +KE F +H + R GTPAA M +VP AV K R
Sbjct: 299 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVA 358
Query: 409 ELTSVFE 415
L + E
Sbjct: 359 LLNDLSE 365
>gi|293400769|ref|ZP_06644914.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305795|gb|EFE47039.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 479
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 217/441 (49%), Gaps = 33/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC N+ DSE +AG L + ++ E+AD+ L+NTC ++ ++ + I
Sbjct: 46 YLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEIGSL 105
Query: 122 KSAKKP-----LVVAGCVPQGSRD-----LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ + GC+ Q D L++ V+++ G + R+ E++ E + GH+
Sbjct: 106 KRLKRSNPDLIFGLCGCMAQ-EEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYEVMVGHK 164
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V +L ++ +LP R K + I GC CTYC + RG S +E ++
Sbjct: 165 RSVEVLSKEGEVIENLPVRRFGKHKAWVNIMYGCDKFCTYCIVPYTRGKERSRAMEDVLQ 224
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP-PF 287
+R + DG KE+ L ++ +YG+D+ + ++ E G +R ++P F
Sbjct: 225 EIRQLKQDGYKEITLLGQNVNSYGKDLHIEGG--FAKLLEETAKIGIERIRFTTSHPWDF 282
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E + IA R + F+H+PVQSG D +L M R YT + + T+ + E +P
Sbjct: 283 SDEMIDVIA---RFDNIMPFIHLPVQSGDDEILKIMGRRYTSAQYLTLFHKIKERMPECA 339
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 407
I+TDII GFP E++E F T++L+KE +F + PR GTPAARM S VK+
Sbjct: 340 ISTDIIVGFPNESEEQFQHTLDLVKECQFDNAFTFIYSPREGTPAARMADSVSLEVKQ-- 397
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQV--LVPSTGNML-- 456
R L + + Y ++ + ++ DG + GY + LV TG +
Sbjct: 398 RRLAELNACWNHYAHVKNEAYLGKVVKVLVDGASKKKANVWSGYTETNKLVNFTGEHVTA 457
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G VKIT+ +S+ GE I
Sbjct: 458 GDIVKVKITACKTFSLDGEQI 478
>gi|313673797|ref|YP_004051908.1| tRNA-i(6)a37 thiotransferase enzyme miab [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940553|gb|ADR19745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calditerrivibrio
nitroreducens DSM 19672]
Length = 438
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 209/437 (47%), Gaps = 27/437 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+KTFGC N+ DS+ + GY TD+ EEAD +INTC+V+ + + + I +
Sbjct: 5 VYIKTFGCQMNEYDSQRILSIFEESGYDKTDDPEEADFAVINTCSVREKPKEKVKSEIGR 64
Query: 121 CKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K K + +AGCV Q G LKE + V +V G I ++ E + KG +
Sbjct: 65 LKRYKNSNPDFKIAIAGCVAQEDGEAILKENKSVDLVIGTDGIPKLYEAISRVEKGERLA 124
Query: 173 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ +P RN V + I GC C+YC + RG S + ++ V+
Sbjct: 125 ITEFYH-DDFTVPIFNRNSSVSAFVTIMKGCDNFCSYCIVPYVRGREKSRHYKEILDEVK 183
Query: 232 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ +GV+EV ++ +YG+ D +N L + A++ DG +R ++P
Sbjct: 184 FLVDNGVREVTFLGQNVNSYGKTLDEKINFTQFL-YMAAQI--DGLNRIRFVTSHPKDFN 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
L ++ R C Y LH+P+Q+GS+ +L MNR YT ++ + E + G+ ++
Sbjct: 241 NDLVDLIASERKICEY--LHLPLQAGSNDILKKMNRGYTFEEYEEKIFNAKEKIKGLALS 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KRSR 408
+D I GFPGETDEDF QT+ +K ++ + ++ PRPGT A+ M+ S V K R +
Sbjct: 299 SDFIVGFPGETDEDFEQTLKAVKNIEYETIFAFKYSPRPGTKASSMQDNISDVEKANRLK 358
Query: 409 ELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSAL----- 461
+L + T L G + I + + H+ + N +L
Sbjct: 359 KLLDAQQIITDNLLKRQIGETQEILVEGKSKKDAHVYSGRNRKNRIVNFTSEKSLQNGEI 418
Query: 462 --VKITSVGRWSVFGEV 476
VKIT + S+FG +
Sbjct: 419 VKVKITQAKKNSLFGNL 435
>gi|314933472|ref|ZP_07840837.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
C87]
gi|313653622|gb|EFS17379.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
C87]
Length = 514
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 222/444 (50%), Gaps = 32/444 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425
Query: 407 SRELTSVF-----EAFTPYLGMEGRVERIWITEIAA---DGIHLGYVQ----VLVPSTGN 454
+ L +A + Y EG + + + E A+ D + GY + V +
Sbjct: 426 LQRLNKKVGEYSQKAMSQY---EGEIVTV-LCEGASKKDDTVLAGYTEKNKLVNFKAPKE 481
Query: 455 MLGTSALVKITSVGRWSVFGEVIK 478
M+G VKI ++S+ G ++
Sbjct: 482 MIGKLVDVKIDEAKQYSLNGTFVQ 505
>gi|154686803|ref|YP_001421964.1| hypothetical protein RBAM_023730 [Bacillus amyloliquefaciens FZB42]
gi|394992058|ref|ZP_10384851.1| YqeV [Bacillus sp. 916]
gi|429505951|ref|YP_007187135.1| hypothetical protein B938_12255 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154352654|gb|ABS74733.1| YqeV [Bacillus amyloliquefaciens FZB42]
gi|393807074|gb|EJD68400.1| YqeV [Bacillus sp. 916]
gi|429487541|gb|AFZ91465.1| hypothetical protein B938_12255 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 451
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/461 (28%), Positives = 229/461 (49%), Gaps = 37/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGN 454
+R +L ++ + EG V I E +G+ +G Y++V+ T +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEEGMFVGYTDNYMKVVFKGTED 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 414 VIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|317129126|ref|YP_004095408.1| tRNA-i(6)A37 thiotransferase protein MiaB [Bacillus
cellulosilyticus DSM 2522]
gi|315474074|gb|ADU30677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus
DSM 2522]
Length = 516
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/438 (28%), Positives = 220/438 (50%), Gaps = 26/438 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ DSE MAG L G+ T NS++AD+ L+NTC ++ +++ + I K
Sbjct: 77 IRTYGCQMNEHDSENMAGILLNMGFESTSNSDDADVILLNTCAIRENAENKVFGEIGHLK 136
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
+ K+ + V GC+ Q +R L++ + V ++ G I R+ +++ + E
Sbjct: 137 TMKRERPELIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPTLLKNAIFNKEMV 196
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ ++P+ R+ + + I GC CTYC + RG S E ++ V
Sbjct: 197 VEVWSKEGDIIENMPRARKGQIQGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIEEV 256
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + +G KE+ L ++ AYG+D+ V++ L ++ E+ +R ++P +
Sbjct: 257 RHLARNGYKEITLLGQNVNAYGKDL-VDMDYGLGDLMDEIRKIDIPRVRFTTSHPKDFDD 315
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
HL E+ + + + +H+PVQSG+ VL M R+YT ++ T+ + E +P T
Sbjct: 316 HLIEV--LAKGGNLVEHIHLPVQSGNSDVLKLMARKYTREEYVTLAKKIKEAIPHASFTT 373
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII GFP ETD F T++L++E ++ + + PR GTPAA+M +P V K+R +
Sbjct: 374 DIIVGFPNETDAQFEDTLSLVREMEYDSAYTYVYSPREGTPAAKMNDNIPMEVKKERLQR 433
Query: 410 LTSVFEAFTPYLG--MEGRVERIWIT-------EIAADGIHLGYVQVLVPSTGNMLGTSA 460
L ++ + +GRV + + +I A + V + +G
Sbjct: 434 LNALVNEISAEKNKSYQGRVVEVLVEGESKKNPDILAGRTRTNRL-VNFKGAKSSIGEIV 492
Query: 461 LVKITSVGRWSVFGEVIK 478
VKIT WS+ G V++
Sbjct: 493 YVKITEAKSWSLDGHVVE 510
>gi|407474276|ref|YP_006788676.1| methylthiotransferase, MiaB family [Clostridium acidurici 9a]
gi|407050784|gb|AFS78829.1| methylthiotransferase, MiaB family [Clostridium acidurici 9a]
Length = 434
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 217/433 (50%), Gaps = 33/433 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M Y + + AD+++INTCTV + S I +C+
Sbjct: 9 TLGCKVNQYETEAMIELFLKNNYEIVSEEDFADVYVINTCTVTNLSDKKSRQFIRRCRGK 68
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ V+A GC Q S ++ ++E V ++ G ++VE+ EE ++ +R L
Sbjct: 69 NENAVIAVVGCYSQVSPEEVAKIEEVDVILGTDNRSKIVEICEEFIQNK-----NRVNLV 123
Query: 181 ALDLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ K+R K L I GC C+YC +ARG + S ++++V V
Sbjct: 124 S-DIMKIRNFEEIGIEEVEGKTRAFLKIQDGCNQYCSYCIIPYARGSIRSRELDNIVMEV 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +G KEV L+ +YG+D+G L+ I +G +R+G P + +
Sbjct: 183 ERLAKNGFKEVVLTGIHISSYGKDLGT--EGLIEVIERINRVNGIERIRLGSLEPTLVTD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ E L C + H+ +QSGSD VL MNR+YT S++R +V + + + T
Sbjct: 241 NFMERLSKLDKLC--NHFHLSLQSGSDTVLKRMNRKYTSSEYREIVKIIRGHMDNVAFTT 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRE 409
DII GFPGET+E+F +T + IKE F +VH+ Q+ PR GTPAA+MK+ + +K RS++
Sbjct: 299 DIIVGFPGETEEEFKETFDFIKEIGFSKVHVFQYSPRKGTPAAKMKEQINGNIKHDRSKK 358
Query: 410 LTSVFEAFTP-----YLGMEGRV---ERIWITEIAADGIHLGYVQVLVPSTGNMLGTSAL 461
L + E T ++G + V E+ + + +G Y++VL P N+ G
Sbjct: 359 LIELSEYLTKEFNKMFIGKDMDVLFEEKSKLKKGYIEGYTTNYIRVLAPGDDNLEGQIQS 418
Query: 462 VKITSVGRWSVFG 474
V I + S+ G
Sbjct: 419 VNIECLHEDSLIG 431
>gi|424836394|ref|ZP_18261043.1| RNA modification protein [Clostridium sporogenes PA 3679]
gi|365977088|gb|EHN13191.1| RNA modification protein [Clostridium sporogenes PA 3679]
Length = 432
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 129/437 (29%), Positives = 217/437 (49%), Gaps = 37/437 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEVVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIVG--------VQQIDRVVEVVEETLKGHEVRL 173
++K + V GC Q ++ ++EGV +V V I+R +E + ++ +V
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVAKIEGVDVVLGTRNKGDIVYWINRAMEEKNQVIEVKDV-- 124
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L K+ L++ + R +K L I GC C+YC ARG + S E ++ VR +
Sbjct: 125 LRNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKVMEEVRKL 183
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G KE+ LS D +YG D+ NL +L I +G +RIG +P F E
Sbjct: 184 SKHGFKEIILSGIDIASYGFDLEGKYNLTSILEDID---KVEGIQRIRIGSIDPTFFTEE 240
Query: 292 LKEIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E++R + F H+ +QSG + L MNR+YT+ +R +V L + + I
Sbjct: 241 -----EIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYREIVYNLRTNIEAVSI 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFPGET+E+FN+T +K+ K ++H+ +F PR T A +M+ +V + ++RS
Sbjct: 296 TTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATKAEKMENQVDGNIKEERS 355
Query: 408 RELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLG----YVQVLVPSTGNMLGTS 459
++ ++ A M +E+ ++ E GI G Y+++ S ++ G
Sbjct: 356 NKIINLDRALEKEF-MNKFIEKEMLVLYEQETKEKGIFEGYTPNYIKIYAKSLKDITGEI 414
Query: 460 ALVKITSVGRWSVFGEV 476
K+ V + + GE+
Sbjct: 415 IRTKLKEVSKDFIKGEI 431
>gi|359148544|ref|ZP_09181685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
sp. S4]
Length = 513
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 191/376 (50%), Gaps = 17/376 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKSPSQSA 113
G +T ++T+GC N DSE +AG L GY + + +EE AD+ + NTC V+ + +
Sbjct: 20 GVKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNR 79
Query: 114 MDTLIAKCK--SAKKP---LVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEET 165
+ + + K+P + V GC+ Q RD K V +V G I ++ ++E
Sbjct: 80 LYGNLGRLAPMKTKRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 139
Query: 166 LKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
E ++ + L A LP R + + + ++VGC CT+C RG
Sbjct: 140 RVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRT 199
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R
Sbjct: 200 GDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSP 258
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + IA + P V LH+P+QSGSD VL AM R Y F ++++ + +
Sbjct: 259 HPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAI 316
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
P I TDII GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M ++P V
Sbjct: 317 PEAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEV 376
Query: 403 VKKRSRELTSVFEAFT 418
V++R L ++ E +
Sbjct: 377 VQERYMRLVALQEEIS 392
>gi|229092810|ref|ZP_04223948.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
gi|228690608|gb|EEL44389.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
Length = 457
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 196/366 (53%), Gaps = 16/366 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 408 RELTSV 413
+ L ++
Sbjct: 425 QRLNAL 430
>gi|414078575|ref|YP_006997893.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
gi|413971991|gb|AFW96080.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
Length = 453
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 137/453 (30%), Positives = 226/453 (49%), Gaps = 48/453 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 8 HIITFGCQMNKADSERMAGILEDMGFEWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G+ L+ + + +V G Q +R+ +++E G++V
Sbjct: 68 AKRKQEEPDLTLIVAGCVAQQEGAALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ + RR+ V + I GC CTYC + RG S T E++ +
Sbjct: 128 TEEVHIFE-DITQPRRDSQVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEAVRSEIEQ 186
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G +R ++
Sbjct: 187 LARQGYKEITLLGQNIDAYGRDLPGSTPEGRHLHTLTDLLYYVHDVP--GIERIRFATSH 244
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K A++ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 245 PRYFTERLIKACADL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRGYM 301
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I+ D I GFPGET+ F T+ L+++ F V+ + + PRPGTPAA S V
Sbjct: 302 PDASISADAIVGFPGETETQFENTLKLVEDIGFDLVNTAAYSPRPGTPAALWDNQLSEEV 361
Query: 404 K----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML- 456
K +R L ++ E Y GR+E + + + QV+ + GN L
Sbjct: 362 KSDRLQRLNHLVNIKAAERSQRYF---GRIEEVLVEAQNTKDTN----QVMGRTGGNRLT 414
Query: 457 ----------GTSALVKITSVGRWSVFGEVIKI 479
G VKIT V +S+ GE +++
Sbjct: 415 FFTGNINELKGQIVKVKITEVRAFSLTGEAVEV 447
>gi|302874325|ref|YP_003842958.1| MiaB family RNA modification protein [Clostridium cellulovorans
743B]
gi|307689408|ref|ZP_07631854.1| RNA modification enzyme, MiaB family protein [Clostridium
cellulovorans 743B]
gi|302577182|gb|ADL51194.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
743B]
Length = 433
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 205/418 (49%), Gaps = 23/418 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE M + + GY + D E+A++++INTCTV + I+K K
Sbjct: 7 TLGCRVNIYESEAMTEKFKSEGYDVVDFDEKAEVYVINTCTVTNMGDKKSRQYISKAKKK 66
Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
VVA GC Q S D + +EGV +V G + +V V + E ++ + L
Sbjct: 67 NPEAVVAVVGCYSQTSPDEVSAIEGVDVVLGTRNKGDIVYYVNRAMDTKEKFVVVKDVLR 126
Query: 181 ALDLPKVRRNKFV----EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+++ F L + GC C+YC +ARG + S E+++ V + +
Sbjct: 127 NKVFEELKIEDFEGKTRAFLKVQDGCNRFCSYCLIPYARGAVCSKNPETIIDEVNKLADN 186
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ LS +YG D+ L++ I +G +RIG P F + + E
Sbjct: 187 GFKEIILSGIHIASYGVDLE-ERKTLMDIIEEIHKINGIKRIRIGSVEPRFFTDEVIEKM 245
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+ C + H+ +QSG DA L MNR+YT ++ V L E +P + I TD+I GF
Sbjct: 246 ASMEKMCPH--FHLSLQSGCDATLKRMNRKYTAEEYFNTVVKLRERIPNVSITTDVIVGF 303
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416
PGET E+FN+T N +KE + ++HI ++ PR GT AA MK +K+ +L +
Sbjct: 304 PGETAEEFNETFNYLKELRVAKMHIFKYSPRKGTKAADMKDDVHGTIKEERSKLLQELDR 363
Query: 417 ------FTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSALVKI 464
++G ++E + ++ D ++G Y++V++ ST +++G V++
Sbjct: 364 ENEKNFIQDFIG--EKLEVLVEEKLKDDNRYIGYTSNYIKVIIDSTEDIVGKIITVRL 419
>gi|329939964|ref|ZP_08289246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseoaurantiacus M045]
gi|329300790|gb|EGG44686.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseoaurantiacus M045]
Length = 499
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 197/382 (51%), Gaps = 26/382 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQS 112
+P ++ ++T+GC N DSE ++G L GY A D+ +AD+ + NTC V+ + +
Sbjct: 3 VPAPKSYEIRTYGCQMNVHDSERLSGLLEDAGYVRAPEDSDGDADVVVFNTCAVRENADN 62
Query: 113 AMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 164
+ + + + A +P + V GC+ Q RD +K+ V +V G I ++ ++E
Sbjct: 63 RLYGNLGRLAPRKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLER 122
Query: 165 TLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 123 ARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRR 182
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRI 280
++ V ++A+GV E+ L ++ AYG DIG LL A + + R+
Sbjct: 183 PGDVLAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGLERV 237
Query: 281 GMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
T+P F + ++ +AE P V LH+P+QSGSD VL AM R Y + +++
Sbjct: 238 RFTSPHPRDFTDDVIEAMAET---PNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIE 294
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK- 396
+ +P I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+
Sbjct: 295 KVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMED 354
Query: 397 KVPSAVVKKRSRELTSVFEAFT 418
++P VV+ R L ++ E +
Sbjct: 355 QIPKKVVQARYERLVALQEEIS 376
>gi|317050742|ref|YP_004111858.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
indicum S5]
gi|316945826|gb|ADU65302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
indicum S5]
Length = 441
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 206/382 (53%), Gaps = 28/382 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+ ++KT+GC N DSE + G L A GY + + +EAD+ + NTC+V+ ++ + +
Sbjct: 2 TQRAFIKTYGCQMNSGDSERIRGILVAHGYEMVSDVKEADLAIFNTCSVREKAEQKVFSD 61
Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
I + + K+ + + GC+PQ R+ L++ + IV GV I +++ + E +G
Sbjct: 62 IGRLRGQKERHPGFRIALCGCIPQVQREGILRKNPLIDIVFGVNNISGLMDFIAEAQQGK 121
Query: 170 EVRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + + D+P R + + I GC C+YC + RG S + S++
Sbjct: 122 RTCRVEDEFFESEYDMPSQREDAMKAFVTIMNGCDNYCSYCIVPYTRGRERSRSAPSILA 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYG-RDIG---VNLPILLNAIVAELPPDGSTMLRIGMTN 284
+R ++ DGV+EV L ++ +Y +D V+ P LL+ +V ++P + RI
Sbjct: 182 EIRQLVDDGVREVTLLGQNVNSYRWQDKAGALVDFPQLLH-LVHDIP----ELQRI---- 232
Query: 285 PPFILEHLKEIAEVLRH----PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
F+ H K+ +E + P V +LH+P+Q+GS+ +L MNR YT ++ + L
Sbjct: 233 -RFVTSHPKDFSEAMMEAMALPRVCKYLHLPIQAGSNRILKLMNRGYTREEYLAKIARLK 291
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 399
E +PG+ +++D + GFPGET+EDF QT++++++ ++ Q+ + RP T AA M +VP
Sbjct: 292 ERIPGVALSSDFLVGFPGETEEDFLQTMDILEQVEYKQIFGFNYSVRPETKAATMADQVP 351
Query: 400 SAVVKKRSRELTSVFEAFTPYL 421
V+ +R L + ++ + L
Sbjct: 352 FEVMNERLNRLFAAQQSISHRL 373
>gi|160933105|ref|ZP_02080494.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
gi|156868179|gb|EDO61551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium leptum DSM
753]
Length = 459
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 210/437 (48%), Gaps = 28/437 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N SD E + G L G+ T++ EEAD L NTC ++ ++ + + K
Sbjct: 29 VRTYGCQQNVSDGEKIKGMLQQMGFGFTEDQEEADFILFNTCAIREHAEDRIFGNVGALK 88
Query: 123 SAKK---PLVVA--GCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K+ L++A GC+ + R K VS+V G + ++V ETL G + R
Sbjct: 89 YLKRRNPSLIIALCGCMMEQEHVVERIRKSYPFVSLVFGTHSLSSFPQLVYETLTGAK-R 147
Query: 173 LLHRKKLPALD--LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ R +D +P R +F LP+ GC C+YC + RG S E+++
Sbjct: 148 VFQRGGEDTIDENIPVRRDGRFKAWLPVMYGCDNFCSYCVVPYVRGRERSREPEAVLKEA 207
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R +I G K++ L ++ +YG+++ VN LL I +G LR ++P
Sbjct: 208 RQLIEGGYKDITLLGQNVNSYGKNLPEPVNFAKLLKEIS---DMEGDYWLRFMTSHPKDC 264
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L ++ H + LH+P QSG++ VL MNR YT + ++ E +PG+ I
Sbjct: 265 TKELIDVMASSGH--IAKHLHLPFQSGNNRVLKEMNRRYTREQYLEIIRYAREKMPGLSI 322
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR-S 407
+D+I GFPGET E+F T++LI+E F ++ F PR GTPAA M S K R
Sbjct: 323 TSDVIVGFPGETYEEFQDTLSLIREVGFTALYTFIFSPRKGTPAAGMSDPVSHKEKTRWF 382
Query: 408 RELTSVFEAFTPY--LGMEGRVERIWITEIAADGIHLGY-----VQVLVPSTGNMLGTSA 460
EL V E + M G+ R + E A+ L V V +P M+G+
Sbjct: 383 AELLKVQEEISVRRCASMVGKTVRGLVEEEASKPGVLNARTEENVTVEIPGGPEMIGSFR 442
Query: 461 LVKITSVGRWSVFGEVI 477
+ +T G W + G I
Sbjct: 443 NILVTDAGNWVLKGNCI 459
>gi|255659203|ref|ZP_05404612.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
20544]
gi|260848655|gb|EEX68662.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
20544]
Length = 430
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 209/410 (50%), Gaps = 35/410 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ ++E M G GY + AD+++INTC+V S +I +
Sbjct: 3 VALTTLGCKVNQFETETMEGLFKQRGYEVVPFEARADVYVINTCSVTSLGDRKSRQIIRR 62
Query: 121 CKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-----GHEV 171
+VA GC Q + D +K +EGV +V G ++ +V+ VE+ ++ G
Sbjct: 63 AHRENPQAIVAVCGCYAQVAPDEIKAIEGVRVVLGTKERAHIVDYVEKAMQEDGIQGTIT 122
Query: 172 RLLHRK---KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ K +P D P+ R L I GC C+YC +ARG + S E +
Sbjct: 123 DIMKAKTFEDIPLYDSPERTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRLPEHVHR 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
++A G KE+ L+ GAYGRD+ ++ L +A L G LR+G
Sbjct: 179 EAEKLVAMGFKEIVLTGIHLGAYGRDLPGDI-TLADACREVLSVPGLKRLRLGSLES--- 234
Query: 289 LEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+E E+ ++R + + LH+P+Q+GSD VL MNR Y +F +++ + E VPG+
Sbjct: 235 IELSPELFALIREDERFCAHLHLPLQAGSDKVLKDMNRHYDTQEFARLIEHIEEEVPGVA 294
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP-AARMKKVPSAVVKKR 406
I+TDII GFPGET+EDF Q ++ +++ F ++H+ + R GTP AAR +V AV K+R
Sbjct: 295 ISTDIIVGFPGETEEDFEQGLSFVEKMNFARMHVFPYSRRTGTPAAARKDQVDEAVKKER 354
Query: 407 SRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLG----YVQV 447
+ ++ E ++G E RV + E A DGI G Y++V
Sbjct: 355 VHRMQALADRKAEEFHRSFIGREMRV----LFETAKDGITDGLTDNYIRV 400
>gi|403383262|ref|ZP_10925319.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kurthia sp.
JC30]
Length = 505
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 132/464 (28%), Positives = 231/464 (49%), Gaps = 38/464 (8%)
Query: 50 SLSPKIPGT---ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV 106
+++P+ G ++TFGC N D+E MAG + GY T++ EA++ L+NTC +
Sbjct: 50 NINPQFEGMGNGRKFLIRTFGCQMNVHDTEVMAGIFESLGYEATEDVNEANVILLNTCAI 109
Query: 107 KSPSQSAMDTLIAKCK--SAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQID 156
+ +++ + + K K P L V GC+ Q ++ LK + V I+ G I
Sbjct: 110 RENAENRVFGELGHLKPLKTKNPDLLLGVCGCMSQEEAVVNKILKTYDQVDIIFGTHNIH 169
Query: 157 RVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
++ +++ E E V + ++ ++PKVR + I GC CTYC +
Sbjct: 170 KLPDILHEAYMSKEMVVDVWSKEGDVIENMPKVRNGGTKAWVNIMYGCDKFCTYCIVPYT 229
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274
RG S + ++ VR + A G +E+ L ++ AYG+D+ ++ L ++ EL
Sbjct: 230 RGKERSRLPQDIIQEVRELAAQGYQEITLLGQNVNAYGKDLDMDYG--LGHLMDELRKID 287
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
+R ++P ++L E+ + + + +H+PVQSGS ++L M R+YT +
Sbjct: 288 VPRIRFTTSHPRDFDDYLIEV--LAKKGNLVEHIHLPVQSGSSSMLKIMARKYTRERYLE 345
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
+V + + +P + + TDII GFP ET+E F +T++L +E F + PR GTPAA+
Sbjct: 346 LVAKIKKAIPDVALTTDIIVGFPNETEEQFEETLSLYREVGFEMAFTYIYSPREGTPAAK 405
Query: 395 MK-KVPSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWITEIAADG-------IHLGY 444
M+ VP V K R + L +V ++ G EG+ I E+ DG + GY
Sbjct: 406 MQDNVPMDVKKDRLQRLNAVVSEYSAKSLEGYEGK-----IVEVLVDGESKRNKDVLAGY 460
Query: 445 VQ----VLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 484
+ V + ++G V++T V +S+ GE I ++ +V+
Sbjct: 461 TRRNKLVNFRAPKEVIGKLVKVRVTDVKTYSLNGEFIGVVEKVE 504
>gi|374296083|ref|YP_005046274.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Clostridium clariflavum DSM 19732]
gi|359825577|gb|AEV68350.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Clostridium clariflavum DSM 19732]
Length = 475
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/437 (28%), Positives = 215/437 (49%), Gaps = 26/437 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++TFGC N+ DSE +AG L+ GYA N E +D+ + NTC V+ ++ + +
Sbjct: 42 YIETFGCQMNEHDSEKLAGMLNEMGYAEGSNMENSDLIIYNTCCVRENAELKVYGHLGPM 101
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE- 170
K KK + V GC+ Q ++ ++ V I G + + E++ + +
Sbjct: 102 KHLKKDNPDLIIAVCGCMMQQPEVVEHIKKVYRHVDLIFGTHNLYKFPELLYNAISSDQT 161
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ ++ L A D+P R++ F + + GC C+YC + RG S +V
Sbjct: 162 VIEIMDSIGLIAEDVPIQRKDGFKAWVTVMYGCNNFCSYCIVPYVRGRERSREFGKIVEE 221
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFI 288
V+ + GVKE+ L ++ +YG+D+G + I ++ EL +G +R ++P +
Sbjct: 222 VKMLGQQGVKEITLLGQNVNSYGKDLGGD--ISFARLLTELNKVEGIERIRFMTSHPKDL 279
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L L C + LH+P Q+GS +L MNR+YT D+ +V+ + + +P + +
Sbjct: 280 SDELIYAMRDLDKLCEH--LHLPFQAGSTKILKEMNRKYTKEDYLRLVEKIKQNIPDISL 337
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKKRS 407
TDII GFPGET+EDF T+ ++++ +F Q + + R GTPAA+ + ++P V K+R
Sbjct: 338 TTDIIVGFPGETEEDFQDTLVVVEKVRFDQAYTFLYSKRTGTPAAKSLNQIPEEVKKERF 397
Query: 408 RELTSVFEAFTPYLG---MEGRVE-----RIWITEIAADGIHLGYVQVLVPSTGNMLGTS 459
+ L + + + + +VE + E G G V ++G
Sbjct: 398 QRLLELQNRISKEINDSYLNKKVEVLVEGKSKTNEKNYTGRTRGNKVVNFQGDDQLIGKL 457
Query: 460 ALVKITSVGRWSVFGEV 476
VKI +V WS+ G +
Sbjct: 458 VTVKINTVKTWSLEGNI 474
>gi|443631840|ref|ZP_21116020.1| hypothetical protein BSI_10910 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347955|gb|ELS62012.1| hypothetical protein BSI_10910 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 451
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 225/458 (49%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD----------GIHLGYVQVLVPSTGNMLG 457
L ++ + + E + I A G Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
+KI G G+ ++I V+D+I + R+SS
Sbjct: 417 KIVKIKIQKAGYPYNEGQFVRI---VEDEITEHMRLSS 451
>gi|434386620|ref|YP_007097231.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Chamaesiphon minutus PCC 6605]
gi|428017610|gb|AFY93704.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Chamaesiphon minutus PCC 6605]
Length = 450
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 145/460 (31%), Positives = 219/460 (47%), Gaps = 49/460 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P + ++ TFGC N++DSE M G L G+ +D+ AD+ L NTCT++ ++ +
Sbjct: 3 PIDRSYHITTFGCQMNKADSERMGGILEDMGFQWSDDPFTADLVLYNTCTIRDLAEQKVY 62
Query: 116 TLIAKCKSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEET 165
+ + K KK L++AGCV Q R + EL+ I+G Q +R+ +++++
Sbjct: 63 SYLGKQTRRKKDNPDLVLIMAGCVAQQEGEALLRRIPELD--LIMGPQHANRLEDLLQQV 120
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTV 223
G +V + D+ K RR+ V +NV GC CTYC + RG S T
Sbjct: 121 FSGAQVVATEPIHIIE-DITKPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTP 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTM 277
E++ ++ + G KEV L ++ AYGRD+ G + L + + +G
Sbjct: 179 EAIRAEIKELARQGYKEVTLLGQNIDAYGRDLPGSTVEGRHSHTLTDLLYYIHDIEGIER 238
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+R ++P + E L I P V HVP QSG + +L AM+R YT +R +VD
Sbjct: 239 IRFATSHPRYFTERL--IKACTELPKVCEHFHVPFQSGDNDILKAMSRGYTHEKYRRIVD 296
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 397
T+ + +P I+ D I GFPGET+E F +T+ LI + F V+ + + PRP TPAA
Sbjct: 297 TIRKYMPDASISADAIVGFPGETEEQFERTLELIADVGFDMVNTAAYSPRPNTPAALWAN 356
Query: 398 VPSAVVK----KRSRELTS--VFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS 451
S +K +R L S E Y RVE + + E A QVL +
Sbjct: 357 QLSEEIKLDRLQRINHLVSQTAIERSGRYF---DRVESVLVEERNAKNTD----QVLGRT 409
Query: 452 TGNML-----------GTSALVKITSVGRWSVFGE-VIKI 479
GN L G VKIT +S+ G+ V KI
Sbjct: 410 RGNRLTFFNGDIEELRGKVVPVKITEARAFSLTGDRVTKI 449
>gi|296333299|ref|ZP_06875752.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305675196|ref|YP_003866868.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296149497|gb|EFG90393.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305413440|gb|ADM38559.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 451
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 227/458 (49%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD----------GIHLGYVQVLVPSTGNMLG 457
L ++ + + E + I A G Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKI + G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILNAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|303233246|ref|ZP_07319918.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
PB189-T1-4]
gi|302480636|gb|EFL43724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
PB189-T1-4]
Length = 459
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 194/373 (52%), Gaps = 22/373 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KTFGC N DSE +AG L G EEADI + TC+V+ + + + +
Sbjct: 14 KTYLIKTFGCQMNLHDSERVAGLLDDCGCNEVQTVEEADIVVFMTCSVREKADTHLYGAV 73
Query: 119 AKC------KSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-- 167
+ K+ + V GC+ Q G+R K + V +V G + V E++ E +
Sbjct: 74 SNLVVVPAPPCGKRVIAVGGCIAQRDGARLKKHIPNVDVVFGTSALASVPELLCEAFESD 133
Query: 168 GHEVRL--LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
G EV + + + + + +LP R F +PI GC CT+C RG S E
Sbjct: 134 GSEVFVDTVEKNRGFSCELPSKREQYFHAWVPIMTGCNNFCTFCIVPLVRGRERSRVFER 193
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V V ++ DGV+EV L ++ +YGRD+ P + ++ E+ G +R +NP
Sbjct: 194 VVAEVARLVDDGVREVTLLGQNVNSYGRDL-YGKP-RFSELLREVGKTGIERIRFTSSNP 251
Query: 286 PFILEH--LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
L H ++ +AE P V LH+ VQSGS+ +L AM+R Y + +V+ L E +
Sbjct: 252 K-DLSHDTIRAMAET---PNVMPQLHLAVQSGSNRILRAMHRAYNREKYLSVIAELKEAI 307
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
PG+ ++TDII GFPGET+EDF QT++L+ E + + + RPGTPAA++ P V
Sbjct: 308 PGIALSTDIIVGFPGETEEDFLQTMSLVDEVGYASAYTFIYSKRPGTPAAKIVDTTPHEV 367
Query: 403 VKKRSRELTSVFE 415
+++R LT E
Sbjct: 368 IQERFERLTKRIE 380
>gi|76802239|ref|YP_327247.1| hypothetical protein NP3198A [Natronomonas pharaonis DSM 2160]
gi|76558104|emb|CAI49690.1| MiaB-like tRNA modifying enzyme [Natronomonas pharaonis DSM 2160]
Length = 414
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 184/359 (51%), Gaps = 25/359 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCTSNRGESRQIERKLRDAGHYRVDTPEKADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV---EVVEETLKGHEVRLLHR 176
+ ++ L+V GC+ D ID V E V + E
Sbjct: 63 ELEAETADLIVTGCMALAQGD----------EFGDIDAQVLHWEDVPTAVTNGECPTTTP 112
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P LD V ILPI GC+ C+YC TK A G + S V V + R ++
Sbjct: 113 DAEPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPPVAENVEKARALVHA 165
Query: 237 GVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP + +E+
Sbjct: 166 GAKELRITGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGVHGIHEEL 222
Query: 296 AEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
A+V + +Y+F+H PVQSGSD VL M R++ + F+ +VD E + ++TD I
Sbjct: 223 ADVFAENEKLYNFIHAPVQSGSDDVLEDMRRQHRVEKFKDIVDAFDERLDHWTLSTDFIV 282
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413
GFP E + D ++ L+ E + ++++++F RPGT AA MK + + K+RS+ +T +
Sbjct: 283 GFPTEDEADHELSMELLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMTDL 341
>gi|424834370|ref|ZP_18259081.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
sporogenes PA 3679]
gi|365978716|gb|EHN14785.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
sporogenes PA 3679]
Length = 450
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 214/440 (48%), Gaps = 28/440 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM--DTLI 118
+++T+GC N+ DSE ++G L GY T+ EEAD+ + NTC V+ ++ + + I
Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKREGYIRTEEREEADVIIFNTCCVRENAELKVYGNLGI 75
Query: 119 AKCKSAKKP---LVVAGCVPQ----GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K AK P + V GC+ Q K+ V I+ G + + E K H
Sbjct: 76 LKGLKAKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFSNYLNEVKKKHT 135
Query: 171 VRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
L ++K ++ ++P R+N + I GC CTYC + RG S T E++
Sbjct: 136 SVLKIQEKEDSIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERSRTPENIED 195
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
++ +++ G KE+ L ++ +YG+D+ + LL + +G +R ++P
Sbjct: 196 EIKNLVSKGYKEITLLGQNVNSYGKDLEPKITFAELLKRVNN---IEGLERVRFMTSHPK 252
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + + E C +H+PVQSGS +L MNR Y + VV + L+P +
Sbjct: 253 DLTDDVIEAIAKCDKLC--EQIHLPVQSGSSDMLKKMNRHYDREKYLDVVSKIKRLIPNV 310
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
I+TDII GFPGET++DF +T+NL+K ++ + R GTPAA+ + +VP V K
Sbjct: 311 AISTDIIVGFPGETEKDFEETLNLVKTVEYDSAFTFLYSIRKGTPAAKFENQVPEDVKHK 370
Query: 406 RSRELTSVFEAFTPY--LGMEGRVERIWI--TEIAADGIHLGYVQV--LVPSTGNM--LG 457
R L V + EG+VE + + T +G +G + LV GN +G
Sbjct: 371 RFNRLVEVVNEISAKKNKAYEGKVEEVLVEGTSKNDEGKLMGRTRTGKLVNFIGNKDSIG 430
Query: 458 TSALVKITSVGRWSVFGEVI 477
VKIT +S+ GE I
Sbjct: 431 ELVNVKITKANSFSLTGEEI 450
>gi|429191122|ref|YP_007176800.1| MiaB-like tRNA modifying enzyme [Natronobacterium gregoryi SP2]
gi|448326688|ref|ZP_21516035.1| MiaB-like tRNA modifying protein [Natronobacterium gregoryi SP2]
gi|429135340|gb|AFZ72351.1| MiaB-like tRNA modifying enzyme [Natronobacterium gregoryi SP2]
gi|445610493|gb|ELY64264.1| MiaB-like tRNA modifying protein [Natronobacterium gregoryi SP2]
Length = 417
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 219/432 (50%), Gaps = 35/432 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D++E AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDSAEAADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG KE + G V D V + V E
Sbjct: 65 ADETAALYITGCMALAQG----KEFAEADVDGEVLHWDEVPQAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD + ILPI GC+ C+YC TKHA G + S +++ V + R +I G
Sbjct: 117 EPVLD-------GVIGILPIARGCMSDCSYCITKHATGKIDSPSIDKNVAKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + E+A
Sbjct: 170 KEIRITGQDTGVYGWDDGERKLHELLERICA---IDGEFRVRVGMANPKGVHGIRDELAA 226
Query: 298 VLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y FLH PVQSGSD VL M R++ + ++ VV+ E + ++TD I GF
Sbjct: 227 VFAGNEKLYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVEVFEEALDYWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 412
P ET+ D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E+++
Sbjct: 287 PTETEHDHEQSLALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSALKRD 346
Query: 413 -VFEAFTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST---GNMLGTSALVKIT 465
V +A+ +G E R + + + AD + Y Q++V + G G +++T
Sbjct: 347 VVGDAYEAMVG-ERRENCLVVEQGTADSVKCRDSAYRQIIVQNATDHGLEPGDFVDLEVT 405
Query: 466 SVGRWSVFGEVI 477
+ FGE I
Sbjct: 406 AHETMYAFGEPI 417
>gi|346310403|ref|ZP_08852419.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
gi|345897693|gb|EGX67604.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
Length = 452
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 189/378 (50%), Gaps = 18/378 (4%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
++ I +T +++TFGC N DSE ++G L + G +ADI + TC V+ +
Sbjct: 1 MNSSILSGKTYFIRTFGCQMNLHDSERVSGLLDSLGCLEVGEPSDADIVIFMTCCVREAA 60
Query: 111 QSAMDTLIAKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEV 161
+ + + CKS ++ + V GC+ Q G L L+ V ++ G I V E+
Sbjct: 61 DTRLYGQCSSCKSLPKSPSGRRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGEL 120
Query: 162 VEETLKG--HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+ + + H VR + A +P R F +PI GC C+YC + RG
Sbjct: 121 IAQAFEDGDHHVRCEEIEDKGATSMPWHRATTFHSWVPIMTGCNNFCSYCIVPYVRGREK 180
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
S E +V V ++ V+E+ L ++ +YGRDI P + + A + G +R
Sbjct: 181 SRPFEQIVDEVAGLVRSDVREITLLGQNVNSYGRDI-FGKPRFADLLRA-VGETGIERIR 238
Query: 280 IGMTNPPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
++P +L E + +A+V P V LH+ VQSGS VL MNR YT + +V +
Sbjct: 239 FTSSHPKDLLPETINAMADV---PAVMPHLHLAVQSGSTRVLKEMNRRYTREQYIDLVRS 295
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK- 397
+ E +PG+ + TDII GFPGET+EDF QT++L +E ++ Q + R GTPAA +
Sbjct: 296 IREKIPGIALTTDIIVGFPGETEEDFLQTLSLAEEVRYAQAFTFIYSKREGTPAAMIDDP 355
Query: 398 VPSAVVKKRSRELTSVFE 415
P V+ R L SV E
Sbjct: 356 TPHDVILDRFNRLVSVIE 373
>gi|222112105|ref|YP_002554369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax
ebreus TPSY]
gi|221731549|gb|ACM34369.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax ebreus TPSY]
Length = 448
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 140/449 (31%), Positives = 225/449 (50%), Gaps = 40/449 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS+ MA L +A GY TD+ E+AD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + K K V V GCV +G +K V +V G Q + R+ +++ + +
Sbjct: 62 DLGRVKHLKDKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPDLL--NARAAK 119
Query: 171 VRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
R P ++ LP R + I GC C+YC + RG S E +
Sbjct: 120 ARPQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDV 179
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIG 281
+ V + GV+EV L ++ AY +G + +LL VAE+P G +R
Sbjct: 180 LVEVAGLADQGVREVTLLGQNVNAYLGAMGDTAEKADFALLLE-YVAEIP--GIERIRFT 236
Query: 282 MTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
++P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ +
Sbjct: 237 TSHPNEFTPRLIEAYAKIPKLVSH------LHLPVQHGSDRILMAMKRGYTAMEYKSTIR 290
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK- 396
L + P M +++D I GFPGET+EDF + + LI + +F F PRPGTPAA +
Sbjct: 291 KLRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLHD 350
Query: 397 KVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHL-GYVQ----VL 448
P V +R +EL +V + E G V+R+ + ++ DG L G + V
Sbjct: 351 DTPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVVN 410
Query: 449 VPSTGNMLGTSALVKITSVGRWSVFGEVI 477
P ++G VKIT +++ GEV+
Sbjct: 411 FPGHERLIGQMIDVKITEARTYTLRGEVV 439
>gi|294501299|ref|YP_003564999.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
B1551]
gi|384044855|ref|YP_005492872.1| methylthiotransferase yqeV [Bacillus megaterium WSH-002]
gi|294351236|gb|ADE71565.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
B1551]
gi|345442546|gb|AEN87563.1| Putative methylthiotransferase yqeV [Bacillus megaterium WSH-002]
Length = 452
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 222/449 (49%), Gaps = 34/449 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q ++++ +E+ K +
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLDYIEQFKKERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG + S + +V +
Sbjct: 123 GNIMKTRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVAQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL LL + +++ G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAQLLRDLESQVK--GLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDQSEMVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ I +D+I GFPGET+E+F +T N IKE+ F ++H+ + R GTPAARM ++ V
Sbjct: 294 LAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIW----ITEIAADGIHLG----YVQVLVPSTGN 454
+R L + EG V + E G+++G Y++V+ ++
Sbjct: 354 ERVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLYVGYTDNYLKVVFKASEE 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQV 483
M+G VKI+ G GE +++L++V
Sbjct: 414 MVGKLVKVKISKAGYPYNEGEFVRVLDEV 442
>gi|295706646|ref|YP_003599721.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
megaterium DSM 319]
gi|294804305|gb|ADF41371.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium
DSM 319]
Length = 452
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 222/449 (49%), Gaps = 34/449 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q ++++ +E+ K +
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLDYIEQFKKERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG + S + +V +
Sbjct: 123 GNIMKTRIYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVAQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL LL + +++ G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAQLLRDLESQVK--GLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDQSEMVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ I +D+I GFPGET+E+F +T N IKE+ F ++H+ + R GTPAARM ++ V
Sbjct: 294 LAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIW----ITEIAADGIHLG----YVQVLVPSTGN 454
+R L + EG V + E G+++G Y++V+ ++
Sbjct: 354 QRVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLYVGYTDNYLKVVFKASEE 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQV 483
M+G VKI+ G GE +++L++V
Sbjct: 414 MVGKLVKVKISKAGYPYNEGEFVRVLDEV 442
>gi|384160190|ref|YP_005542263.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|384165120|ref|YP_005546499.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens LL3]
gi|384169260|ref|YP_005550638.1| hypothetical protein BAXH7_02664 [Bacillus amyloliquefaciens XH7]
gi|328554278|gb|AEB24770.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|328912675|gb|AEB64271.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens LL3]
gi|341828539|gb|AEK89790.1| hypothetical protein BAXH7_02664 [Bacillus amyloliquefaciens XH7]
Length = 451
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 229/461 (49%), Gaps = 37/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLG----YVQVLVPSTGN 454
+R +L ++ + EG V I E DG+ +G Y++V+ + +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGMFVGYTDNYMKVVFKGSED 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
++G VKI G G+ +++ V++++ N R+SS
Sbjct: 414 LIGKLVKVKIQKAGYPYNEGQFVRV---VEEEMTQNMRMSS 451
>gi|291454555|ref|ZP_06593945.1| RNA modification enzyme [Streptomyces albus J1074]
gi|291357504|gb|EFE84406.1| RNA modification enzyme [Streptomyces albus J1074]
Length = 505
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 191/376 (50%), Gaps = 17/376 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKSPSQSA 113
G +T ++T+GC N DSE +AG L GY + + +EE AD+ + NTC V+ + +
Sbjct: 40 GVKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNR 99
Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEET 165
+ + + K +P + V GC+ Q RD K V +V G I ++ ++E
Sbjct: 100 LYGNLGRLAPMKTRRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 159
Query: 166 LKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
E ++ + L A LP R + + + ++VGC CT+C RG
Sbjct: 160 RVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRT 219
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R
Sbjct: 220 GDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSP 278
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + IA + P V LH+P+QSGSD VL AM R Y F ++++ + +
Sbjct: 279 HPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAI 336
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402
P I TDII GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M ++P V
Sbjct: 337 PDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEV 396
Query: 403 VKKRSRELTSVFEAFT 418
V++R L ++ E +
Sbjct: 397 VQERYMRLVALQEEIS 412
>gi|256827172|ref|YP_003151131.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Cryptobacterium curtum DSM 15641]
gi|256583315|gb|ACU94449.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Cryptobacterium curtum DSM 15641]
Length = 448
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 192/371 (51%), Gaps = 23/371 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T + TFGC N+ DSE +AG L + G + EAD + TC V+ + + +A
Sbjct: 6 TFSITTFGCQMNKHDSERIAGLLESLGSIAVSSPAEADFSIFMTCCVREKADERLMGQVA 65
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ ++ + + GC+ Q G + L +L+ V +V G ++ + +++E ++
Sbjct: 66 TMKNDAPRKGSPFGRRFVAIGGCIGQRDGEKLLTQLDNVDVVFGTHNMETLPQLLESAIE 125
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
++ + +LP+ R + + LPI VGC CT+C + RG S ++
Sbjct: 126 KGSRRAEIIDGRAEFHDELPEDREHPWAAWLPITVGCNNFCTFCIVPYVRGREISRPLDE 185
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + R + GVKE+ L ++ +YGRD+ +L+A+ A G +R +
Sbjct: 186 IADQARAYVQQGVKEITLLGQNVNSYGRDLYGSPRFDAVLDAVAAS----GIERIRFATS 241
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + + E L P + LH+P QSGS+ +L+AMNR YT+ + +++ L +
Sbjct: 242 HPKDLTDGVIERFATL--PNLMPALHLPAQSGSNRILAAMNRRYTIEHYEGLIEKLRVVR 299
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
P + ++TDII GFPGET++DF QT L+K + QV + R GTPAAR+ P +V
Sbjct: 300 PYIALSTDIIVGFPGETEDDFEQTCELVKRVGYNQVFTFIYSRRDGTPAARLPDDTPRSV 359
Query: 403 VKKRSRELTSV 413
+++R L S+
Sbjct: 360 IQERFDRLVSI 370
>gi|384176166|ref|YP_005557551.1| hypothetical protein I33_2627 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595390|gb|AEP91577.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 451
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSQLDTRV--EGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD----------GIHLGYVQVLVPSTGNMLG 457
L ++ + + E + I A G Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKI G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|303229106|ref|ZP_07315908.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
gi|302516230|gb|EFL58170.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
Length = 435
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 13/367 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G Y D +ADI++INTC+V + + LI
Sbjct: 6 KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 65
Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
K K + ++V GC Q D + ++GV++V G ++VE+VE+ + +
Sbjct: 66 RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 125
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L +K + I GC C +C + RG L S V+ +V
Sbjct: 126 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 185
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G E+ L+ G YG ++ P L + + A L +R G +
Sbjct: 186 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 244
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I
Sbjct: 245 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 302
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
TDII GFP ETDEDF++T+N +KE F +H + R GTPAA M +VP AV K R
Sbjct: 303 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVA 362
Query: 409 ELTSVFE 415
L + E
Sbjct: 363 LLNDLSE 369
>gi|169827222|ref|YP_001697380.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
sphaericus C3-41]
gi|229890559|sp|B1HR59.1|MIAB_LYSSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|168991710|gb|ACA39250.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
Length = 514
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 217/442 (49%), Gaps = 24/442 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---- 115
T Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 69 TFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELG 128
Query: 116 -TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
L K K+ + + V GC+ Q ++ L+ V +V G I R+ +++E
Sbjct: 129 FLLKYKRKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAYMSK 188
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 189 EMVVEVWSKEGDVIENLPKKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + A G +E+ L ++ AYG+D ++ L ++ L +R ++P
Sbjct: 249 AEVRELAAAGYQEIMLLGQNVNAYGKDFE-DIEYRLGDLMDALRKIDIPRIRFTTSHPRD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+HL E+ + + + +H+PVQSGS+ +L M R+YT F T+V+ + +P +
Sbjct: 308 FDDHLIEV--LAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIKAAIPEVT 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
+ TDII G+P ET+E F +T++L +E F + PR GTPAA+M VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVPEEVKKER 425
Query: 407 SRELTSVFEAFT--PYLGMEGRVERIWI--TEIAADGIHLGYVQ----VLVPSTGNMLGT 458
+ L V ++ + G V + + T D + GY + V ++G
Sbjct: 426 LQRLNEVVGEYSRKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKGPAEVIGQ 485
Query: 459 SALVKITSVGRWSVFGEVIKIL 480
VKI +S+ GE ++++
Sbjct: 486 LVKVKIIETTSYSLTGEFLEVV 507
>gi|384428234|ref|YP_005637593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
pv. raphani 756C]
gi|341937336|gb|AEL07475.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
pv. raphani 756C]
Length = 485
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 213/403 (52%), Gaps = 44/403 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN E+AD+ L+NTC+++ +Q + + +
Sbjct: 39 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVE---ETLKG 168
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ E+ K
Sbjct: 99 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158
Query: 169 H------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E+ R P D P + FV I+ GC C++C + RG S
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEVSRP 211
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPD 273
E ++ V + A GV+E+ L ++ GAYG D G +L +L+ I A++ D
Sbjct: 212 FEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--D 268
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
G +R ++P LE + + R P + ++LH+PVQ+GSD +LSAM R YT +F
Sbjct: 269 GIGRIRFTTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEF 325
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392
++ + L + PG+ I++D I GFPGETD DF++T+ LI++ F Q + RPGTPA
Sbjct: 326 KSKIRKLRAVRPGISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPA 385
Query: 393 ARMK-KVPSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWI 432
+ ++ P AV + R L + A + M G V+R+ +
Sbjct: 386 SDLEDDTPDAVKQARLARLQAHINAHAAGISQRMVGSVQRVLV 428
>gi|289768676|ref|ZP_06528054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
TK24]
gi|289698875|gb|EFD66304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
TK24]
Length = 505
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 190/375 (50%), Gaps = 16/375 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
GT T ++T+GC N DSE ++G L GY A +AD+ + NTC V+ + + +
Sbjct: 12 GTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKL 71
Query: 115 DTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
+ K A +P + V GC+ Q RD +K V +V G I ++ ++E
Sbjct: 72 YGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131
Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNINGLERVRFTSPH 250
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + + IA + P LH+P+QSGSD VL AM R Y + +++ + +P
Sbjct: 251 PRDFTDDV--IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIP 308
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P AVV
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVV 368
Query: 404 KKRSRELTSVFEAFT 418
++R L ++ E +
Sbjct: 369 QERYERLVALQEEIS 383
>gi|397662316|ref|YP_006503016.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis ATCC 35865]
gi|394350495|gb|AFN36409.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis ATCC 35865]
Length = 469
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 228/463 (49%), Gaps = 64/463 (13%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
G + +Y+KTFGC N+ DSE MA L A G LTDN E+AD+ L+NTC+++ SQ +
Sbjct: 29 GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKSQEKVF 88
Query: 116 TLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + KK + V GCV +G+ L+ V I+ G Q + R+ E++E+ K
Sbjct: 89 SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146
Query: 168 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R P ++ LP R N + I GC C+YC + RG S +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ V + GVKE+ L ++ AY +G + I A++ EL D + RI
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264
Query: 284 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
+I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV +
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRS 321
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA----- 393
L + PG+ +++D I GFPGET++DF T+ LIK+ + RPGTPAA
Sbjct: 322 LYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSFIYSRRPGTPAADLPDD 381
Query: 394 --------RMKKVPSAVVKKRSRELTS---------VFEAFTPYLGME--GRVERIWITE 434
R++++ A+V K+++E + + E F+ E GR E I
Sbjct: 382 TPYEVKLDRLQRL-QALVNKQAKEFSEKMLGTEQIILVEGFSKRDSNELMGRTENNRIVN 440
Query: 435 IAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
+ N++G V+IT V S+ GE++
Sbjct: 441 FKG--------------SENLIGQMVPVRITEVYTNSLRGELV 469
>gi|294500858|ref|YP_003564558.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
B1551]
gi|384045292|ref|YP_005493309.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
megaterium WSH-002]
gi|294350795|gb|ADE71124.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
B1551]
gi|345442983|gb|AEN88000.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
megaterium WSH-002]
Length = 520
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 221/439 (50%), Gaps = 24/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD+ E+A + L+NTC ++ +++ + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGELGH 138
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ L++ + V ++ G I R+ ++ E E
Sbjct: 139 LKALKRERPELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNEAYLAKE 198
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ + I GC CTYC + RG S E ++
Sbjct: 199 MVIEVWSKEGDVIENLPRARKGSVKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 259 EVRHLAAQGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDEIRKIDVARIRFTTSHPRDF 317
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 318 DDRLIEV--LAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELVRKIKEAIPTASL 375
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 376 TTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQDNVPMEVKKERL 435
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ----VLVPSTGNMLGTS 459
+ L ++ + EG+V + + + + + GY + V + +++G
Sbjct: 436 QRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLVNFKAPKSVIGQL 495
Query: 460 ALVKITSVGRWSVFGEVIK 478
VK+T W++ GE+++
Sbjct: 496 VKVKVTKAKTWTLNGEMVE 514
>gi|373469162|ref|ZP_09560371.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
oral taxon 082 str. F0431]
gi|371765044|gb|EHO53408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
oral taxon 082 str. F0431]
Length = 475
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 190/361 (52%), Gaps = 20/361 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G LS GY +N E+AD+ L NTCTV+ + + + + K
Sbjct: 41 TFGCQMNARDSEKLSGILSGIGYLEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKN 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
K+ + + GC+ Q + ++++++ + G I ++ E++ + LK + V
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLKTKKQVVD 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + LP R+ F + I GC C+YC + RG S E ++ ++
Sbjct: 161 VMESADMIVEKLPNKRQFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKG 220
Query: 233 VIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ADGVKEV L ++ +YG+ D N +LL+ + +G LR +P + +
Sbjct: 221 LVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVSK---IEGLERLRFMTPHPKDLSD 277
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ E+ + + C + LH+P+QSGS ++L MNR YT + +V + +P + + T
Sbjct: 278 EVIEVMKKNKKICKH--LHLPLQSGSSSILKKMNRVYTKEGYLDLVRRIKAAIPDISLTT 335
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII GFPGE++EDF T++++KE ++ + R GTPAA+M+ ++ V+K R
Sbjct: 336 DIIVGFPGESEEDFLDTLDVVKEVRYDSAFTFIYSKRSGTPAAKMEDQIDPKVIKDRFDR 395
Query: 410 L 410
L
Sbjct: 396 L 396
>gi|302871702|ref|YP_003840338.1| tRNA-i(6)A37 thiotransferase protein MiaB [Caldicellulosiruptor
obsidiansis OB47]
gi|302574561|gb|ADL42352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
obsidiansis OB47]
Length = 471
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 193/396 (48%), Gaps = 44/396 (11%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I K
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYVETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
KKP + V GC+PQ ++L + I G + + + +++ T K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + + +P RR + I GC CTYC + RG S E ++ +
Sbjct: 162 ISEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCTYCIVPYVRGRERSRRPEEIIYEIEQ 221
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI-----------VAELPPDGSTMLR 279
++ +GVKEV L ++ +YG+D+ G+ P LL + V P D S L
Sbjct: 222 LVQNGVKEVTLLGQNVNSYGKDLANGITFPKLLEKVNEIKGIERIRFVTSHPKDLSDELI 281
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+ M + + EH+ H+PVQSGS +L AMNR YT D+ +V+ L
Sbjct: 282 VAMRDLDKVCEHI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLVEKL 325
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKV 398
+P + I TDII GFPGETDEDF T+++ ++ +F + + R GTPA +M +V
Sbjct: 326 KTNIPDIAITTDIIVGFPGETDEDFEDTLDVCQKVEFDSAYTFIYSKRRGTPAEKMPNQV 385
Query: 399 PSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWI 432
P + +R + L + E A M G+ I I
Sbjct: 386 PEDIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILI 421
>gi|16079597|ref|NP_390421.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. subtilis str. 168]
gi|221310468|ref|ZP_03592315.1| hypothetical protein Bsubs1_13906 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314791|ref|ZP_03596596.1| hypothetical protein BsubsN3_13822 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319714|ref|ZP_03601008.1| hypothetical protein BsubsJ_13743 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323991|ref|ZP_03605285.1| hypothetical protein BsubsS_13877 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|418032280|ref|ZP_12670763.1| hypothetical protein BSSC8_17070 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428280033|ref|YP_005561768.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto
BEST195]
gi|430758699|ref|YP_007208916.1| hypothetical protein A7A1_3207 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449095037|ref|YP_007427528.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
XF-1]
gi|452915199|ref|ZP_21963825.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Bacillus subtilis MB73/2]
gi|1730990|sp|P54462.1|MTAB_BACSU RecName: Full=Threonylcarbamoyladenosine tRNA methylthiotransferase
MtaB; AltName: Full=tRNA-t(6)A37 methylthiotransferase
gi|1303812|dbj|BAA12468.1| YqeV [Bacillus subtilis]
gi|1890061|dbj|BAA12080.1| YqeV [Bacillus subtilis]
gi|2634989|emb|CAB14485.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus subtilis subsp. subtilis str. 168]
gi|291484990|dbj|BAI86065.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto
BEST195]
gi|351471143|gb|EHA31264.1| hypothetical protein BSSC8_17070 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959789|dbj|BAM53029.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BEST7613]
gi|407965364|dbj|BAM58603.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BEST7003]
gi|430023219|gb|AGA23825.1| Hypothetical protein YqeV [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449028952|gb|AGE64191.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
XF-1]
gi|452115547|gb|EME05943.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Bacillus subtilis MB73/2]
Length = 451
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD----------GIHLGYVQVLVPSTGNMLG 457
L ++ + + E + I A G Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKI G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|350266745|ref|YP_004878052.1| hypothetical protein GYO_2811 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599632|gb|AEP87420.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 451
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD----------GIHLGYVQVLVPSTGNMLG 457
L ++ + + E + I A G Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKI G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|383753868|ref|YP_005432771.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365920|dbj|BAL82748.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 446
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 193/375 (51%), Gaps = 20/375 (5%)
Query: 55 IPGTETIYMK--TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
I G Y+K +GC N +D+E MAGQL+A GY T++++ AD+ +INTC V+ ++
Sbjct: 4 IDGKAHRYVKFLVYGCQMNVADAERMAGQLAAIGYERTEDTDIADLLIINTCAVRETAED 63
Query: 113 AMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 164
+ I + K K+ + GC+ Q D +K + V G Q+ + +VV+E
Sbjct: 64 KVYGKIGEIKKLKRENPQLIFGITGCMAQKESDKLIKRAPHIDFVLGTGQVHELTKVVQE 123
Query: 165 TL--KGHEVRL-LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+GH V L K PA+ P R +PI GC CTYC + RG
Sbjct: 124 IQQERGHVVNTALDAKVAPAIAEGSPIAREGSLSAWVPIMYGCNNFCTYCIVPYVRGRER 183
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
S E +V V +A G KEV L ++ +YG+D + L +V ++ +G +R
Sbjct: 184 SRRPEDVVKEVEQAVAQGYKEVTLLGQNVNSYGKDHKLATFAELLKMVDKV--EGIKRVR 241
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
++P + + + + H C +H+PVQ GS+ +L AMNR YT+ +R +V +
Sbjct: 242 FMTSHPKDLSDEVIDAIAEGEHLC--EHIHLPVQYGSNHLLKAMNRVYTVESYRELVKKI 299
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
+P + TD+I GFPGET++DF Q ++ +KE ++ + + R GTPAA M+ +V
Sbjct: 300 RAKLPHASLTTDLIVGFPGETEDDFAQMLDFLKEIRYDSAYTFIYSKRSGTPAAEMENQV 359
Query: 399 PSAVVKKRSRELTSV 413
AV K+R L +V
Sbjct: 360 DDAVKKERLNALMAV 374
>gi|357402124|ref|YP_004914049.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337768533|emb|CCB77246.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 519
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 191/373 (51%), Gaps = 15/373 (4%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
+T ++T+GC N DSE +AG L GY E+ AD+ + NTC V+ + + +
Sbjct: 3 AKTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPGGEDTADVIVFNTCAVRENADNRLYG 62
Query: 117 LIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K A +P + V GC+ Q RD +++ V +V G I R+ ++E
Sbjct: 63 NLGRLAPKKAARPGMQIAVGGCLAQKDRDTIVRKAPWVDVVFGTHNIGRLPVLLERARIA 122
Query: 169 HEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
E ++ + L A LP R + + + I+VGC CT+C RG +
Sbjct: 123 EEAQVEIAESLEAFPSTLPTRRESAYAAWVAISVGCNNTCTFCIVPALRGKEKDRRPGDI 182
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ V ++ADGV EV L ++ AYG DIG + + A +G +R +P
Sbjct: 183 LAEVEALVADGVIEVTLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPR 241
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + IA + P V LH+P+QSGSDAVL +M R Y + +++ + +P
Sbjct: 242 DFTDDV--IAAMAETPNVMHQLHMPLQSGSDAVLKSMRRSYRQDRYLGIIEKVRAAMPDA 299
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
I+TDII GFPGET+ DF QT+++++E +F Q Q+ RPGTPAA M ++P VV++
Sbjct: 300 AISTDIIVGFPGETEADFEQTLHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQE 359
Query: 406 RSRELTSVFEAFT 418
R L ++ E +
Sbjct: 360 RYERLVALQEEIS 372
>gi|239616755|ref|YP_002940077.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1]
gi|239505586|gb|ACR79073.1| MiaB-like tRNA modifying enzyme [Kosmotoga olearia TBF 19.5.1]
Length = 425
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 215/428 (50%), Gaps = 25/428 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
E + TFGC NQ ++E MA +L + +T +SE ADI++IN+CTV + ++ + L
Sbjct: 3 EIVSFFTFGCKLNQYETEGMA-ELLQNDFRVTFDSEIADIFVINSCTVTAEAERKLRQLY 61
Query: 119 AKCKSAKKP---LVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K AK P V+ GC + S +LK+L I+G++ ++ E ++E + ++
Sbjct: 62 RRLK-AKNPGSKFVIVGCYSELSAGELKDLGFDLILGIKDKLKIKEFLKENTENTCIK-- 118
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTV 233
P R ++ I GCL C+YC+ + ARG+ + S E + ++T+
Sbjct: 119 --DYFQVTKGPYGRTRAYI---GIQDGCLNNCSYCRIRLARGNKIISKPPEVVAEELKTL 173
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+ G +E+ L+ + G YG G +L LL +V +G LR+ +P + L
Sbjct: 174 VEHGFQEIVLTGINIGFYGFGEGYSLISLLKQLV---KIEGEWRLRLSSLDPRLVSNEL- 229
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
I + +P + +H+ +QSGSD VL +MNR YT +D +V TD+I
Sbjct: 230 -ITFMTDNPKIAQHVHLSLQSGSDKVLKSMNRNYTTNDVEQIVALFRSRNNRFSFTTDVI 288
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTS 412
GFPGETD DF +T+ +K +F +VHI +F PRPGT AARM S +KK R+ L
Sbjct: 289 VGFPGETDTDFVETLEFVKRIRFLKVHIFRFSPRPGTKAARMSNQISGNIKKERATVLKK 348
Query: 413 V-FEAFTPYLGMEGRVERIWITEIAADGIH-LGYVQVLVPS--TGNMLGTSALVKITSVG 468
V EA YL E + E DGI GY + +P TG++ V+I +
Sbjct: 349 VALEASKDYLNEHVGKESTVLIE-KNDGIFSYGYDEFYIPHRVTGSIENGFVKVQIGGIE 407
Query: 469 RWSVFGEV 476
F +V
Sbjct: 408 ELEAFSDV 415
>gi|212697105|ref|ZP_03305233.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
7454]
gi|212675880|gb|EEB35487.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
7454]
Length = 432
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 223/449 (49%), Gaps = 48/449 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++T +KT GC NQ +SE + G+ +++ ADI++INTCTV + S
Sbjct: 2 SKTFNIKTLGCKVNQYESEAIEELFKKRGFEKKEDN--ADIYVINTCTVTNMSDRKSRQT 59
Query: 118 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
I+K + K ++A GC Q D +KE+EGV IV G + + VV++ E + H
Sbjct: 60 ISKARKENKDAIIAVIGCYSQVKGDEVKEIEGVDIVLGSRNKEEVVDLCENFISDH---- 115
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 220
+ D+ + + + +E L I+ GC C+YC +ARG++ S
Sbjct: 116 -----VKTKDVEEFKIGEAIEDLEISNQADMTRSYIKIQDGCNMYCSYCLIPYARGNIAS 170
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
+ S++ + + +G KE+ L+ +YG+D+ +N+ L++ I DG +R+
Sbjct: 171 RDLVSIIDEAKRLRDNGFKEIVLTGIHVASYGKDLDLNIS-LIDVIEHIAKIDGIERIRL 229
Query: 281 GMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
P I L+ +K+ + H H+ +QSGSD VL MNR+Y F+ V
Sbjct: 230 SSMEPRHIDREFLQRMKDTKKACDH------FHLSLQSGSDDVLKLMNRKYDTKIFKEKV 283
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
D + E P + TDII GFP E++++ QT + ++ KF + H+ ++ R GT AA MK
Sbjct: 284 DLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRNIKFSKTHLFKYSKRDGTKAANMK 343
Query: 397 -KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLGY-VQVLVP 450
+V K+RS+EL SV E + ++ ++ + ++ T+ DG GY L
Sbjct: 344 NQVDGNTKKRRSKEL-SVIEKKNSHEFLDKQIGKTLSVLFETKTELDGYKSGYSTNYLRV 402
Query: 451 STGNMLGTSAL--VKITSVGRWSVFGEVI 477
T + +G + + +KIT + G++I
Sbjct: 403 HTKDDVGINEIKDIKITQRIDDYLIGQII 431
>gi|456064184|ref|YP_007503154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium CB]
gi|455441481|gb|AGG34419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium CB]
Length = 452
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/453 (29%), Positives = 227/453 (50%), Gaps = 41/453 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KTFGC N+ DS MA L A G +TD E+AD+ L+NTC+++ ++ + + +
Sbjct: 4 LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSDLG 63
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHE 170
+ + KK + V GCV +G + + V +V G Q + R+ +++ + + G
Sbjct: 64 RLRELKKTKPNLLIGVGGCVASQEGQQIISRAPYVDVVFGPQTLHRLSDLIAQRRETGRS 123
Query: 171 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ ++ D LP R+ + + I GC C+YC + RG S + ++
Sbjct: 124 QVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRPFDDVLTE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNP 285
V + GVKE+ L ++ AY +G + I LL +AE+P G+
Sbjct: 184 VAGLATQGVKEIVLLGQNVNAYLGKMGGSEEIADFALLIEYIAEIP---------GVERI 234
Query: 286 PFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
F H KE A+ L + P + S LH+PVQ SD+VLSAM R YT ++++++ +
Sbjct: 235 RFTTSHPKEFAQRLIDVYAKVPKLVSHLHLPVQHASDSVLSAMKRGYTALEYKSIIRKMR 294
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 399
+ P + +++D I GFPGETDEDF + + +++E F F RPGTPAA + P
Sbjct: 295 AVRPDLTLSSDFIVGFPGETDEDFAKLLKMVEELNFDNSFCFIFSARPGTPAANLSDDTP 354
Query: 400 SAVVKKRSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLG-------YVQVLVP 450
V KR + L ++ E+ + M G ER+ + +A DG++L + P
Sbjct: 355 YEVKLKRLQTLLALVESQANQISKNMLGNTERVLVEGLAKDGVNLQGRAANNRVIHFTAP 414
Query: 451 STG--NMLGTSALVKITSVGRWSVFGEVIKILN 481
S +++G ++IT V +++ G+++ L
Sbjct: 415 SDDIESLVGQMVDIRITEVLNFTLRGDLMSELT 447
>gi|330838436|ref|YP_004413016.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
35185]
gi|329746200|gb|AEB99556.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
35185]
Length = 432
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 219/439 (49%), Gaps = 33/439 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ T GC NQ ++E M G GYA+ E AD+++INTC+V S + LI + +
Sbjct: 6 LTTLGCKVNQFETETMEGLFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQLIRRAR 65
Query: 123 SAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RL 173
+ V+A GC Q +++ +EGV +V G ++ +V+ VE + V +
Sbjct: 66 RLNERAVIAVTGCYAQVAPEEIRSIEGVRVVLGTKERAAIVDHVERAAREAGVFDGTGDI 125
Query: 174 LHRKK---LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+H + +P P R L I GC C++C +ARG + S ++S+
Sbjct: 126 MHASEFEDIPLFGAPARTRA----FLKIEEGCENFCSFCIIPYARGPVRSRLLKSVRREA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++A G KE+ L+ G YGRD+G L +A+ A L G LR+G I
Sbjct: 182 AKLLAMGFKEIVLTGIHLGCYGRDLGD--VTLADAVRAVLSLPGLKRLRLGSLES--IEL 237
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+A + + LH+P+Q+GSD VL AMNR Y + F +++ + VPG+ I+T
Sbjct: 238 SDDLLALLAQEERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERVERAVPGVAIST 297
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
DII GFPGET E F +++ ++ F ++H+ + PR GTPAA +VP A K+R
Sbjct: 298 DIIVGFPGETQELFEESLAFVERMNFARMHVFPYSPRRGTPAAAFAAQVPEAEKKERVHR 357
Query: 410 LTSVF----EAF-TPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS---TGNMLGTSAL 461
+ ++ EAF +LG E V E DG+ Y++V + TG++
Sbjct: 358 MQALAAKKSEAFHAAFLGTEMPVLFETEREGVTDGLTANYIRVYTDAPVRTGDIHA---- 413
Query: 462 VKITSVGRWSVFGEVIKIL 480
+++ + R V+GE++ L
Sbjct: 414 MRLVHLYRDGVWGELLAFL 432
>gi|428223576|ref|YP_007107673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
gi|427983477|gb|AFY64621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
Length = 450
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/452 (30%), Positives = 221/452 (48%), Gaps = 46/452 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +A + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFEFSEDPNDASVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 ARRKHDDPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGLEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ P L V ++P G +R +
Sbjct: 187 ALSRQGYKEVTLLGQNIDAYGRDLPGATPEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL AM R YT+ +R ++ + E
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTVEKYRRIIQMIREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+E F T+ L+ + F ++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAATWEGQLSEE 361
Query: 403 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-- 456
VK +R L SV +A L + R+E + + D QV+ + GN L
Sbjct: 362 VKADRLQRLNHLVSV-KAAERSLRYQDRIEEVLV----EDQNPKDPSQVMGRTRGNRLTF 416
Query: 457 ---------GTSALVKITSVGRWSVFGEVIKI 479
G VKIT V +S+ GE + +
Sbjct: 417 FAGDIQELRGQVVKVKITEVRAFSLTGESLLV 448
>gi|434400303|ref|YP_007134307.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
gi|428271400|gb|AFZ37341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
Length = 457
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/447 (30%), Positives = 218/447 (48%), Gaps = 46/447 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G+ ++ EAD+ L NTCT++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILEEMGFRWAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 72 KHEQPDLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131
Query: 177 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ K RR+ V + I GC C+YC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIRAEMEELGR 190
Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + V ++P G +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTETGRHQHTLTDLLYYVHDIP--GIDRIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L + + L P V H+P QSG + VL AM R YT +R+++ + + +P
Sbjct: 249 FTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTQEKYRSIIAKIRQYMPDAA 306
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK--- 404
I+ D I GFPGET+ F T+ L++E F Q++ + + PRPGTPAA S VK
Sbjct: 307 ISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDR 366
Query: 405 -KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML----- 456
+R L T E Y GR+E + + QV+ + GN L
Sbjct: 367 LQRLNHLVATKAAERSERYF---GRIEEVLVEAENPKNP----TQVMGRTRGNRLTFFPG 419
Query: 457 ------GTSALVKITSVGRWSVFGEVI 477
G + VKIT +S+ GEV+
Sbjct: 420 KIEELQGKTVKVKITEARAFSLTGEVV 446
>gi|303232181|ref|ZP_07318884.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
gi|302513287|gb|EFL55326.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
Length = 431
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 13/367 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G Y D +ADI++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 61
Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
K K + ++V GC Q D + ++GV++V G ++VE+VE+ + +
Sbjct: 62 RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 121
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L +K + I GC C +C + RG L S V+ +V
Sbjct: 122 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G E+ L+ G YG ++ P L + + A L +R G +
Sbjct: 182 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I
Sbjct: 241 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
TDII GFP ETDEDF++T+N +KE F +H + R GTPAA M +VP AV K R
Sbjct: 299 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVA 358
Query: 409 ELTSVFE 415
L + E
Sbjct: 359 LLNDLSE 365
>gi|433654786|ref|YP_007298494.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292975|gb|AGB18797.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 452
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 189/362 (52%), Gaps = 17/362 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDTLIAKCK 122
T GC NQ ++E M GY + D E AD+++INTCTV + +S + AK
Sbjct: 27 TLGCKVNQYETEAMVEIFKNSGYDVVDFDEYADVYIINTCTVTGRGDMKSRQEIRKAKKI 86
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ + V GC Q S ++ L V+IV G + VV++VE+ E +
Sbjct: 87 NPDSIIAVVGCYSQVASNEVLNLPEVNIVLGTKNKGEVVKLVEKVSGDKEKINAVENIFD 146
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L + + L I GC CTYC +ARG + S ++++ V+ +
Sbjct: 147 NKKFEELKIS-AQEGHTRAYLKIQDGCNQFCTYCIIPYARGPVRSRRPDNILDEVKRLRD 205
Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G KEV L+ +YG+D+ +NL L+ I DG +R+ P F+ E
Sbjct: 206 NGYKEVILTGIHVASYGKDLENINL---LDIIKMIHEVDGIERIRMSSIEPTFLTEDF-- 260
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I EV P HV +QSGSD+ L M R+YT S+++ ++D + E + + I TDI+
Sbjct: 261 IKEVASLPKFCRHYHVSLQSGSDSTLKRMGRKYTTSEYKEIIDRIREHIKDVAITTDIMV 320
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 413
GFPGETDE+FN+T N +K +F ++H+ ++ RPGT AA +V ++V ++RS++L +
Sbjct: 321 GFPGETDEEFNETFNFVKAIEFSKMHVFKYSRRPGTKAANYPDQVKNSVKEERSQKLIKL 380
Query: 414 FE 415
E
Sbjct: 381 SE 382
>gi|410667735|ref|YP_006920106.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Thermacetogenium phaeum DSM 12270]
gi|409105482|gb|AFV11607.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Thermacetogenium phaeum DSM 12270]
Length = 459
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 184/375 (49%), Gaps = 34/375 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++ T+GC N DSE M L GY T+ EEADI+++NTC+V+ ++ +
Sbjct: 9 FFIATWGCQMNSHDSEIMRAILEKNGYQWTERQEEADIFILNTCSVRRHAEQRAIGFLGN 68
Query: 121 CKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC PQ + LE + I G + R+ E + +
Sbjct: 69 LKNLKERNPELIIAVGGCAPQNPEVREYLEKKAPHVDIIFGTRNYHRLPEFLNRVM---- 124
Query: 171 VRLLHRKKLPALD---------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ R ++ ALD LP + + I GC C+YC + RG S
Sbjct: 125 ---VKRSRVIALDGEDEDLPGLLPAHHTSTVKAYVTIMYGCNNFCSYCIVPYTRGREKSR 181
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
+E + V+ + A G KEV L ++ +YG+D+ +N LL A + ++P G +R
Sbjct: 182 PLEEIYQEVQELAAKGYKEVMLLGQNVNSYGKDLPGAINFAKLL-AHLDKIP--GLARIR 238
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
++P + L E R C + H+P+Q+GS+ +L MNR YT + + D +
Sbjct: 239 YMTSHPRDFDDELIETIAATRKVCEH--FHLPLQAGSNRILQLMNRGYTREKYIQLTDKI 296
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 398
+PG I TDII GFPGET++DF T++L++ +F + + PR GTPAA M+ +V
Sbjct: 297 KNKIPGASITTDIIVGFPGETEDDFLDTLDLVQTVRFDAAYTFMYSPRRGTPAAEMENQV 356
Query: 399 PSAVVKKRSRELTSV 413
PS + K R L V
Sbjct: 357 PSEIKKDRLNRLVDV 371
>gi|261416782|ref|YP_003250465.1| radical SAM protein [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385791613|ref|YP_005822736.1| radical SAM domain-containing protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 467
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 178/337 (52%), Gaps = 22/337 (6%)
Query: 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK--PLVVAGCVPQGSRD--LKELEGVS 148
+E+ + + +N CTVK + AM L+ K S P+ + GC P+ R+ L+ + V
Sbjct: 70 TEKPEAFYLNVCTVKG-NAGAMK-LLRKAASTFPGVPIYITGCAPKDFREEALRTVPHVQ 127
Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN-----KFVEILPINVGCL 203
++++D + ++ + ++ R D K RN FV I+ I GCL
Sbjct: 128 FTSLKELDASAILPTQSAQSPSSQINARTP----DSNKASRNVLRESPFVGIVNIEEGCL 183
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
AC +C T +G L S+ +++V +V+ ++ DG E+ L+ +D YG DIG NL L
Sbjct: 184 DACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCLEIQLTGQDCACYGFDIGTNLAELT 243
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
I+ + +G+ +R+GM NP +L + + + +Y F+H+PVQSGS+ VL AM
Sbjct: 244 QRILTHV--NGNYRIRLGMGNPRHVLSYQEALLNCFTDDRIYKFIHIPVQSGSENVLKAM 301
Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
NR +T D+ T+ E ++TD+I G+PGET DFN T+ L+KE + +I++
Sbjct: 302 NRRHTARDYATLAHAFTERFRKFTLSTDLIVGYPGETAADFNDTLTLLKETRPTVCNITR 361
Query: 384 FYPRPGTPAARMKKVPSAVVK-----KRSRELTSVFE 415
F RPGT AAR++ + V +RS L F+
Sbjct: 362 FVTRPGTVAARLETASNQAVSDDIKHERSAILAEAFQ 398
>gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
Length = 452
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 219/447 (48%), Gaps = 40/447 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ + + AD+ L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K+ LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 69 AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G + L + + V ++P G LR ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E L + + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMP 303
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
I+ D I GFP ET+E F T+ L+ + F Q++ + + PRPGTPAA ++ S VK
Sbjct: 304 DASISADAIVGFPEETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWEQQLSEEVK 363
Query: 405 K-RSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML----- 456
R + L + +A GR+E + + D QV+ + GN L
Sbjct: 364 SDRLQRLNHLVAQKAAQRSQRYLGRIEEVLV----EDQNPKDNSQVMGRTQGNRLTFCKG 419
Query: 457 ------GTSALVKITSVGRWSVFGEVI 477
G V+IT V +S+ GE I
Sbjct: 420 NIDELKGQLIKVEITEVRAFSLTGEAI 446
>gi|338731013|ref|YP_004660405.1| MiaB-like tRNA modifying protein [Thermotoga thermarum DSM 5069]
gi|335365364|gb|AEH51309.1| MiaB-like tRNA modifying enzyme [Thermotoga thermarum DSM 5069]
Length = 434
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 206/400 (51%), Gaps = 18/400 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ GC NQ ++E++ +L G+ + ADI ++NTC V + + +I K
Sbjct: 4 VYVTFLGCKVNQYETEFLIEKLEKNGFVHVTDPSSADICVVNTCMVTNEAARQSRQVIRK 63
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 176
K VV GC + L ++ ++G + +VE + + L+ + LHR
Sbjct: 64 FKRVNPNCVVVAVGCYSHLDGQKLIKIGADLVLGNAEKQNIVEYILDYLQTR--KPLHRV 121
Query: 177 KKLPALDLPKVRR---NKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRT 232
K ++ KV ++ + I GC C+YC +ARG + S + +V V+
Sbjct: 122 TKSDSIVEEKVESFLTDRTRAYVKIEDGCYEMCSYCIVPYARGQKIRSKPIHEVVDEVQK 181
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+++ G KE+ L + G YG+D G +L L+ + ++ +G +R+ N I E L
Sbjct: 182 LVSSGYKEIVLVGVNLGKYGKDTGESLSKLIESCFNQV--NGEFRIRLSSINVQDIGEDL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+ + C + LH+P+QSGSD +LS MNR+Y +SDF VV+ E+ TDI
Sbjct: 240 VEVFKRYNRLCPH--LHIPLQSGSDRILSMMNRKYKVSDFLNVVEKFREINTDFSFTTDI 297
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 411
I GFPGET DF+QT+ +I++ KF +VH +F PRPGTPA+ K++P ++R +EL
Sbjct: 298 IVGFPGETLGDFHQTLKVIEQVKFTKVHAFRFSPRPGTPASSFDKQIPPKEKERRLKELK 357
Query: 412 SVFEAFTPYLGME--GRVERIWITEIAADGIHLGYVQVLV 449
+ E + G+V + + ++ +GI GY + V
Sbjct: 358 ELSEKVSRSYRETCLGKVREVLVEQV-RNGISTGYDEYYV 396
>gi|304439566|ref|ZP_07399471.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371945|gb|EFM25546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 433
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 200/403 (49%), Gaps = 30/403 (7%)
Query: 63 MKTF-----GCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
MKTF GC NQ +SE M GY D+ + AD++++NTCTV + S
Sbjct: 1 MKTFSILTLGCKVNQYESEAMKEIFEKNGYIEVDSETDVADVYVVNTCTVTNLSDRKSRQ 60
Query: 117 LI--AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
I AK ++ + V GC Q S D ++ +EGV I+ G R+ E+VE K + +
Sbjct: 61 YIRRAKRENPDSIVCVVGCYSQVSPDEVQAIEGVDIIMGTTDRSRIFELVE-NFKKDKNQ 119
Query: 173 LLHRKKLPAL-DLPKVRRNKFVEI----LPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ K L + + +K E+ + + GC CTYC +ARG + S T+E V
Sbjct: 120 ISIVKSLKGFTEFQHIEIDKESEMTRSYMKVQDGCNRYCTYCIIPYARGPIRSRTIEDSV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ + G KE+ L+ G+YG+D+G L++ I DG +R+ P
Sbjct: 180 EEAKRLSEAGYKELVLTGIHIGSYGKDLGDER--LVDLIEEITKVDGIERIRLSSIEPIT 237
Query: 288 I----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
I LE +K +V H H+ +QSGS+AVL AMNR YT ++ D + E
Sbjct: 238 ITRDFLERIKATGKVCDH------FHLSLQSGSNAVLKAMNRRYTREEYIETCDLIREYY 291
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P + + TDII GFPGETDEDF TV+L+K +F ++H+ ++ R GTPAA MK +
Sbjct: 292 PYVGLTTDIIVGFPGETDEDFEDTVDLVKRVEFSKIHVFKYSKRSGTPAAEMKNQVDGNI 351
Query: 404 K-KRSRELTSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLGY 444
K +RS L + + + R ++ + E DG GY
Sbjct: 352 KIERSNRLLELSDKMMERFIEKNRDTKLKVLFEEEKDGYMRGY 394
>gi|425447602|ref|ZP_18827587.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9443]
gi|389731777|emb|CCI04191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9443]
Length = 446
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 137/449 (30%), Positives = 216/449 (48%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
G VKIT V +S+ G +
Sbjct: 418 TGNIEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|295706204|ref|YP_003599279.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
319]
gi|294803863|gb|ADF40929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
319]
Length = 509
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 221/439 (50%), Gaps = 24/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD+ E+A + L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ L++ + V ++ G I R+ ++ E E
Sbjct: 128 LKALKRERPELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNEAYLAKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPRARKGSVKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 248 EVRHLAAQGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDEIRKIDVARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELVRKIKEAIPTASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 408 RELTSVFEAFTP--YLGMEGRVERIWITEIAADG--IHLGYVQ----VLVPSTGNMLGTS 459
+ L ++ + EG+V + + + + + GY + V + +++G
Sbjct: 425 QRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLVNFKAPKSVIGQL 484
Query: 460 ALVKITSVGRWSVFGEVIK 478
VK+T W++ GE+++
Sbjct: 485 VKVKVTKAKTWTLNGEMVE 503
>gi|289449396|ref|YP_003475195.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289183943|gb|ADC90368.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 485
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 185/368 (50%), Gaps = 17/368 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +++TFGC N +DSE +AG L GY N E ADI LINTC+V+ + +
Sbjct: 29 KTYFIQTFGCQQNDNDSEKLAGLLQKMGYTPAANRESADIVLINTCSVRENASDRFFGNL 88
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG 168
K KK + GC+ + +++++ ++ + R E++ L G
Sbjct: 89 GILKPLKKSNPGMLICTCGCMMKQEEVVEKIKRSYPFVDVLLAPSDLYRFPELLWRRLNG 148
Query: 169 -HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + + A +P + K+ + I GC CTYC RG S E ++
Sbjct: 149 TRRVYDITADDVVAEGIPVLHERKYRALCTIMYGCNNYCTYCIVPFTRGRERSRQPEEIL 208
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPP 286
++ + A G EV L ++ +YGRD+ + L A+ AE G +R ++P
Sbjct: 209 RELQELAASGYTEVMLLGQNVNSYGRDLADKMSFAELLALAAE--HSGLPRIRYMTSHPK 266
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L ++ +P + +H+P+QSGSDAVL MNR Y ++ + ++VD +P +
Sbjct: 267 DLSPELIDVMAA--YPNIERHIHLPLQSGSDAVLRKMNRHYNIARYMSIVDLAKRKIPDL 324
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKK 405
I TDII GFPGET+ DF +T+ ++ E + Q+ PRPGTPAA+ +VP+ VV +
Sbjct: 325 SITTDIIVGFPGETEADFAETLRIVGEVGYDSAFTFQYSPRPGTPAAKWTNQVPAEVVSE 384
Query: 406 RSRELTSV 413
R L ++
Sbjct: 385 RFDRLVTL 392
>gi|73662777|ref|YP_301558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|123775346|sp|Q49X85.1|MIAB_STAS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|72495292|dbj|BAE18613.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 513
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 214/442 (48%), Gaps = 24/442 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
K KK + V GC+ Q ++ LK + V ++ G I R+ E++EE
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G KE+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTHIPNV 363
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
+ TDII G+P ETDE F +T+ L E +F + + R GTPAA+M VP V K
Sbjct: 364 ALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMNDNVPLDVKKD 423
Query: 406 RSRELTSVFEAFT--PYLGMEGRVERIWITEIAA--DGIHLGYVQ----VLVPSTGNMLG 457
R ++L ++ EG+ ++ ++ D + GY V + +M+G
Sbjct: 424 RLQQLNKKVACYSERAMQQYEGQTVQVLCEGVSKKDDTVLSGYTSKNKLVNFKAPKSMIG 483
Query: 458 TSALVKITSVGRWSVFGEVIKI 479
V I ++S+ G I +
Sbjct: 484 KIVNVYIDEAKQFSLNGTFISV 505
>gi|15614935|ref|NP_243238.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
halodurans C-125]
gi|81786524|sp|Q9KAB7.1|MIAB_BACHD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|10174992|dbj|BAB06091.1| BH2372 [Bacillus halodurans C-125]
Length = 538
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 214/441 (48%), Gaps = 30/441 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N DSE MAG L G+ TD + +AD+ LINTC ++ +++ + I K
Sbjct: 99 VRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADVILINTCAIRENAENKVFGEIGNLK 158
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K+ + V GC+ Q +R +++ + + ++ G I R+ ++ L G E
Sbjct: 159 QLKREKPELVIGVCGCMSQEEGVVNRIMQKHQHIDMIFGTHNIHRLPHLLRNALFGKEMI 218
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + ++ ++P+ R K + I GC CTYC + RG S E ++ V
Sbjct: 219 IEVWSKEGDIVENMPRAREGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEV 278
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + G KE+ L ++ AYG+D+ +L L ++ E+ +R ++P +
Sbjct: 279 RDLARQGYKEITLLGQNVNAYGKDLA-DLDYGLGDLMDEIRKIDIPRVRFTTSHPRDFDD 337
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
HL E+ + + + +H+PVQ G+ +L M R+YT + + + +P T
Sbjct: 338 HLIEV--LAKGGNLVEHIHLPVQHGNSEILKLMARKYTREQYVELAQKIKRAIPNASFTT 395
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
D+I GFP ETDE F T++L++E +F + PR GTPAA+MK VP V ++R
Sbjct: 396 DLIVGFPNETDEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDNVPMEVKRERLAR 455
Query: 410 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST-----------GNMLGT 458
L ++ + +E + + + E+ +G +L T +++G
Sbjct: 456 LNALVNDISAQKNLEYQDK---VVEVLVEGESKKDPNILAGRTRTNRLVNFKGPKSVIGD 512
Query: 459 SALVKITSVGRWSVFGEVIKI 479
VK+T WS+ GE++++
Sbjct: 513 IVYVKVTEAKTWSLNGEMVEM 533
>gi|158320272|ref|YP_001512779.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
gi|158140471|gb|ABW18783.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
Length = 433
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 217/431 (50%), Gaps = 27/431 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ +++ M GY + + E AD+++INTCTV + I + K
Sbjct: 8 TLGCKVNQYETQAMGELFEKEGYEIVSDEEVADVYVINTCTVTNVGDKKSRQFIRRAKRN 67
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL----LHR 176
+ ++A GC Q + +++ +EGV+IV G + +++VE VE ++ L +
Sbjct: 68 NEEAIIAVVGCYAQTAPKEVLAIEGVNIVIGTNERNKIVEAVENCSTEEKISLVDDIMKV 127
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
K+ + + V+ +K L I GC CTYC +ARG + S +V V T++
Sbjct: 128 KQFEEMSIVDVK-DKTRAFLKIQEGCNQYCTYCIIPYARGPIRSRGPLEIVEEVETLVQK 186
Query: 237 GVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLK 293
G KEV L+ +YG+D G +L +L + G +R+ P F + L+
Sbjct: 187 GFKEVVLTGIHVASYGKDRSDGTDLIHILKQVNG---AQGLERIRLSSLEPTLFTDDFLR 243
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E++++ + + H+ +QSG +A L MNR+YT +++ + + ++ P + + TD+I
Sbjct: 244 ELSQLDK---ICDHFHLSLQSGCNATLKRMNRKYTAEEYKEIAGRIRKVYPEVALTTDVI 300
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTS 412
GFPGET+E+FN T IK+ F ++H+ ++ PR GTPA++ K+ + K RS +L
Sbjct: 301 VGFPGETEEEFNTTYEFIKDIGFSEIHVFKYSPRTGTPASKYKEQVDGLTKHYRSEKLID 360
Query: 413 VFEAF-TPYLG-MEGRVERIWITEIAA------DGIHLGYVQVLVPSTGNMLGTSALVKI 464
+ E Y G G+ ++ I+ +G Y++VLVP++ + G V +
Sbjct: 361 LGEKMKNQYRGQFVGKERKVLFEAISKENKAYMEGYTDNYLKVLVPASEVVEGELTNVVL 420
Query: 465 TSVGRWSVFGE 475
+ + GE
Sbjct: 421 KELKEEYILGE 431
>gi|448238779|ref|YP_007402837.1| tRNA methylthiotransferase [Geobacillus sp. GHH01]
gi|445207621|gb|AGE23086.1| tRNA methylthiotransferase [Geobacillus sp. GHH01]
Length = 449
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 223/459 (48%), Gaps = 35/459 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILEYIEQFQRERQPINAV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
R ++A G KE+ L+ TG YG D+ N LL + ++P G LRI I
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLRRLRISSIEASQIT 239
Query: 290 EH----LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ LK +++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P
Sbjct: 240 DEVIDVLKRSEKIVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPE 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + +D+I GFPGET+++F +T N I+E +F ++H+ + R GTPAARM ++
Sbjct: 294 LAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKH 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNML 456
R R L ++ + EG+V + E + G Y++V P+T M+
Sbjct: 354 DRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMV 413
Query: 457 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
G VKIT G GE +++ V D++A + + SS
Sbjct: 414 GELVKVKITKAGYPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|288556902|ref|YP_003428837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pseudofirmus OF4]
gi|288548062|gb|ADC51945.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pseudofirmus OF4]
Length = 541
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 231/477 (48%), Gaps = 35/477 (7%)
Query: 31 PKYNKNKPR-LHDNHLSKTGSLSPK----IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF 85
P Y + K R D + + L P+ I +T +++T+GC N DSE MAG L+
Sbjct: 65 PDYKQGKRRGKEDVQVLRPDDLIPEPMQGIGNGKTFHIRTYGCQMNTHDSENMAGLLTEM 124
Query: 86 GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQG--- 137
G+ TD++++AD+ L+NTC ++ +++ + I KS KK L V GC+ Q
Sbjct: 125 GFTETDDTKDADVILLNTCAIRENAENKVFGEIGHLKSLKKERPEVILGVCGCMSQEENV 184
Query: 138 -SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFV 193
+R +++ + + I+ G I R+ +++ + G E + + ++ ++P+ R K
Sbjct: 185 VNRIMQKHQHIDIIFGTHNIHRLPSLLQNAIYGKEMVIEVWSKEGDIVENMPRKREGKTQ 244
Query: 194 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253
+ I GC CTYC + RG S E ++ VR + G KE+ L ++ AYG+
Sbjct: 245 AWVNIMYGCDKFCTYCIVPYTRGKERSRLPEDIIDEVRDLARQGYKEITLLGQNVNAYGK 304
Query: 254 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
D+ + L ++ ++ +R ++P +HL I+ + + + +H+PVQ
Sbjct: 305 DLK-DRDYRLGHLMDDIHKIDIPRVRFTTSHPRDFDDHL--ISVLSKGGNLVEHIHLPVQ 361
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
G+ +L M R+YT + + + +P TD+I GFP ET+E F T++L++E
Sbjct: 362 HGNSDILKLMARKYTREQYVELAHKIKMAIPKASFTTDLIVGFPNETEEQFEDTLSLVRE 421
Query: 374 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWI 432
+F + PR GTPAA+MK VP V K+R L ++ + ++ + + +
Sbjct: 422 IEFDSAFTYIYSPREGTPAAKMKDNVPMEVKKERLARLNALVNEISAKKNLDYQDQ---V 478
Query: 433 TEIAADGIHLGYVQVLVPST-----------GNMLGTSALVKITSVGRWSVFGEVIK 478
E+ +G VL T +++G VK+ WS+ GE+++
Sbjct: 479 VEVLVEGESKKDPDVLAGRTRTNRLVNFKGPKSIIGEIVYVKVNEAKTWSLTGELVE 535
>gi|386358193|ref|YP_006056439.1| hypothetical protein SCATT_45450 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365808700|gb|AEW96916.1| hypothetical protein SCATT_45450 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 535
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 191/373 (51%), Gaps = 15/373 (4%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
+T ++T+GC N DSE +AG L GY E+ AD+ + NTC V+ + + +
Sbjct: 6 AKTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPGGEDTADVIVFNTCAVRENADNRLYG 65
Query: 117 LIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K A +P + V GC+ Q RD +++ V +V G I R+ ++E
Sbjct: 66 NLGRLAPKKAARPGMQIAVGGCLAQKDRDTIVRKAPWVDVVFGTHNIGRLPVLLERARIA 125
Query: 169 HEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
E ++ + L A LP R + + + I+VGC CT+C RG +
Sbjct: 126 EEAQVEIAESLEAFPSTLPTRRESAYAAWVAISVGCNNTCTFCIVPALRGKEKDRRPGDI 185
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ V ++ADGV EV L ++ AYG DIG + + A +G +R +P
Sbjct: 186 LAEVEALVADGVIEVTLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPR 244
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + IA + P V LH+P+QSGSDAVL +M R Y + +++ + +P
Sbjct: 245 DFTDDV--IAAMAETPNVMHQLHMPLQSGSDAVLKSMRRSYRQDRYLGIIEKVRAAMPDA 302
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
I+TDII GFPGET+ DF QT+++++E +F Q Q+ RPGTPAA M ++P VV++
Sbjct: 303 AISTDIIVGFPGETEADFEQTLHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQE 362
Query: 406 RSRELTSVFEAFT 418
R L ++ E +
Sbjct: 363 RYERLVALQEEIS 375
>gi|421730939|ref|ZP_16170065.1| hypothetical protein WYY_07619 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407075093|gb|EKE48080.1| hypothetical protein WYY_07619 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 451
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/461 (28%), Positives = 229/461 (49%), Gaps = 37/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 290 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 404
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLG----YVQVLVPSTGN 454
+R +L ++ + EG V I E + G+ +G Y++V+ T +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEAGMFVGYTDNYMKVVFKGTED 413
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 414 VIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|304316819|ref|YP_003851964.1| MiaB family RNA modification protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 471
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 219/448 (48%), Gaps = 44/448 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++T+GC N DSE +AG L+ GY TDN E+AD+ L NTC V+ ++ + +++
Sbjct: 35 FHIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVSQ 94
Query: 121 CKSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE 170
K K KP L + GC+ Q ++ ++ + IV G + + E+++E+L
Sbjct: 95 LKELKQRKPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQESLNSDT 154
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + K D+P R + I GC CTYC + RG S ++
Sbjct: 155 TIIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREKSREPHDILN 214
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGV-----NLPILLNAIVAELPPDGSTMLRIGMT 283
++++ +G KE+ L ++ +YG D+ + +L ++N I DG +R +
Sbjct: 215 EIKSLANEGFKEITLLGQNVNSYGNDLPIKIDFADLLYMINDI------DGIERIRFMTS 268
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P I + L L C + LH+PVQSGS+ +L MNR+Y+ + +++ L + +
Sbjct: 269 HPKDISDKLIFAMRDLDKLCEH--LHLPVQSGSNKILERMNRKYSRERYLEIINKLRDNI 326
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
PG+ I TDII GFPGETD+DF T++L+KE ++ + + R GTPA +M +V +
Sbjct: 327 PGIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKGTPAEKMSNQVDEDI 386
Query: 403 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPSTGN------ 454
KR EL ++ + M+G+V E+ +G + L T
Sbjct: 387 KHKRLEELINLQNIISIEKNNEMKGKV-----VEVLVEGTSKRDSEKLTGRTRTNKIVHF 441
Query: 455 -----MLGTSALVKITSVGRWSVFGEVI 477
++G VKI W++ GE+I
Sbjct: 442 KAKPELIGKFVNVKIIDTKAWTMQGELI 469
>gi|334137185|ref|ZP_08510629.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF7]
gi|333605269|gb|EGL16639.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF7]
Length = 494
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/440 (30%), Positives = 221/440 (50%), Gaps = 30/440 (6%)
Query: 62 YM-KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
YM +T+GC N+ D+E M G L GY T+ +EAD+ L+NTC ++ ++ + +
Sbjct: 53 YMIRTYGCQMNEHDTETMKGMLEELGYTSTEEKQEADVILLNTCAIRENAEDKVFGELGH 112
Query: 121 CKSAK--KP---LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K KP L V GC+ Q R L++ V ++ G I R+ ++++ E
Sbjct: 113 LKHLKLEKPNLVLGVCGCMSQEEGVVKRILQKHGHVDLIFGTHNIHRLPALLQDAYLSKE 172
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK +R + I GC CTYC + RG S E ++
Sbjct: 173 MVVEVWSKEGDIIENLPK-KREGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLA 231
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + G KE+ L ++ AYG+D ++ ++A++ +R ++P
Sbjct: 232 EVRDLARQGFKEITLLGQNVNAYGKDFE-DISYSFGDLMADMRKIDVPRIRFTTSHPRDF 290
Query: 289 LEHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+HL EVL H + +H+PVQSGS VL M+R+Y+ + +V + +P +
Sbjct: 291 DDHL---VEVLAHKGNLMEHIHLPVQSGSTEVLKRMSRKYSRELYLDLVRKIKTAIPDVV 347
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
++TDII GFPGETDE F +T++L+KE +F + + PR GTPAA M+ VP V K+R
Sbjct: 348 LSTDIIVGFPGETDEQFEETLSLVKEVRFDFAYSFIYSPREGTPAAAMEDNVPEDVKKER 407
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWI---------TEIAADGIHLGYVQVLVPSTGNMLG 457
L V AF+ + R E + + +E+ + + VL + N++G
Sbjct: 408 LYRLNEVLGAFSKESNEKLRGEVVEVLVEGESKKNSEVLSGRTRTNKL-VLFRGSKNLIG 466
Query: 458 TSALVKITSVGRWSVFGEVI 477
+ A V++T W V GE++
Sbjct: 467 SFAHVRVTEPQTWLVKGELV 486
>gi|387771045|ref|ZP_10127217.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
gi|386902964|gb|EIJ67785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
Length = 474
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 226/455 (49%), Gaps = 39/455 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LT+ EEAD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLESTHGLELTEIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G + V I+ G Q + R+ ++ + G
Sbjct: 62 QLGRWKELKKKNPNLLIGVGGCVASQEGEHIRQRAPFVDIIFGPQTLHRLPAMINQIRGG 121
Query: 169 H----EVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+V +K L PK FV I+ GC CTYC + RG S +
Sbjct: 122 QSSVVDVSFPEIEKFDCLPEPKAEGPTAFVSIME---GCNKYCTYCVVPYTRGEEVSRPL 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRI 280
+ ++ + + A GV+EV L ++ AY D G+ L +VA + DG LR
Sbjct: 179 DDVLFEIAQLAAQGVREVNLLGQNVNAYRGPTFDGGICSFAELLRLVAAI--DGIDRLRF 236
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+NP LE +I +V R P + SFLH+PVQ+GSD +L+ M R +T ++++++ L
Sbjct: 237 TTSNP---LEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKL 293
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399
+ P +QI++D I GFPGET+E+F QT+NLI++ F + + RPGTPAA M
Sbjct: 294 RAVRPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSYSFVYSARPGTPAADMPDDV 353
Query: 400 SAVVKKRSREL------TSVFEAFTPYLGMEGRV-----ERIWITEIAADGIHLGYVQVL 448
+ KK+ L + LG E RV + I E+ + V +
Sbjct: 354 TEEEKKQRLYLLQQRINNQALQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFV 413
Query: 449 VPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 483
T +M+G +KIT V S+ GEV++ Q+
Sbjct: 414 --GTPDMIGKFVDIKITDVFTNSLRGEVVRTEEQM 446
>gi|321312027|ref|YP_004204314.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BSn5]
gi|320018301|gb|ADV93287.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BSn5]
Length = 451
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 225/457 (49%), Gaps = 29/457 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + E+ + R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 DKVIEVLD--RSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVT 297
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVH 357
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAAD----------GIHLGYVQVLVPSTGNMLGT 458
L ++ + + E + I A G Y++V+ T +M+G
Sbjct: 358 RLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIGK 417
Query: 459 SALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKI G G+ +++ V+D+I + R+SS
Sbjct: 418 IVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|428220347|ref|YP_007104517.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
gi|427993687|gb|AFY72382.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
Length = 453
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 214/446 (47%), Gaps = 36/446 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ T GC N++DSE MAG L GY+ TD ++EAD+ L NTC+++ ++ + + +
Sbjct: 11 HIVTLGCQMNKADSERMAGILETMGYSSTDEADEADLVLYNTCSIRDNAEQKVYSYLGRQ 70
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K+ LVVAGCV Q G L+ + + +V G Q ++R+ ++E+ G++V
Sbjct: 71 AKRKHKNPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHVNRLDHLLEQVFNGNQVSA 130
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ RRN + + I GC +CTYC RG S T ++++ V
Sbjct: 131 TESAYIEE-DITTPRRNSSITAWVNIIYGCNESCTYCIVPRVRGVEQSRTPDAILQEVNN 189
Query: 233 VIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ GV I L ++ + +G +R ++
Sbjct: 190 LSQQGYKEITLLGQNIDAYGRDLPPSNLGGGVGGKITLTDLLYYIHDVEGIERIRFATSH 249
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L + L P V H+P QSG + +L AM R YT +R ++D + ++P
Sbjct: 250 PRYFSPRLIQACAEL--PKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDNIRAIMP 307
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
I D I FPGET+ F T+ L+ + F V+ + + PRPGTPAA S +K
Sbjct: 308 DASITADAIVAFPGETEAQFENTLRLVGDISFDLVNTAAYSPRPGTPAAIWTNQLSEEIK 367
Query: 405 -KRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHL-------GYVQVLVPS 451
R + L + E YL GR E I I I + + L +
Sbjct: 368 DDRLQRLNHLVNQKAAERSQRYL---GRTEEILIESINPKNPNQLMGRTRGNRITFLNET 424
Query: 452 TGNMLGTSALVKITSVGRWSVFGEVI 477
+ N++ +KIT +S+ G +I
Sbjct: 425 SSNLIAQVVNLKITEARPFSLTGVLI 450
>gi|359458947|ref|ZP_09247510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
sp. CCMEE 5410]
Length = 454
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 220/448 (49%), Gaps = 36/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--- 118
++ T+GC N++DSE MAG L GY ++N ++A++ L NTCT++ ++ + + +
Sbjct: 9 HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
AK K A+ LVVAGCV Q D L+ + + +V G Q +R+ +++E+ G +V L
Sbjct: 69 AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L I P V H+P QSG + VL AM+R YT +R ++D + ++
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYRRIIDNIRAIM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403
P I+ D I GFPGET+ F T+ L+++ +F ++ + + PRPGTPAA S V
Sbjct: 303 PDASISADAIVGFPGETEAQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAALWDNQLSEAV 362
Query: 404 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML------- 456
K + + L + RI + D QV+ + GN L
Sbjct: 363 KADRLQRLNRLVGVCAELRSQRYANRIEEV-LVEDQNPKDPTQVMGRTRGNRLTFFPGKI 421
Query: 457 ----GTSALVKITSVGRWSVFGEVIKIL 480
G VK+T V +S+ GE + L
Sbjct: 422 EELRGNIVSVKVTEVRSFSLTGEPLSAL 449
>gi|451343574|ref|ZP_21912645.1| MiaB-like tRNA modifying enzyme [Eggerthia catenaformis OT 569 =
DSM 20559]
gi|449337671|gb|EMD16828.1| MiaB-like tRNA modifying enzyme [Eggerthia catenaformis OT 569 =
DSM 20559]
Length = 435
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 186/364 (51%), Gaps = 22/364 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI-- 118
+ +T GC N +SE M GY D E++DI++INTCTV + + +I
Sbjct: 4 VAFQTLGCKVNSYESEGMLELFKKKGYESVDFKEKSDIYVINTCTVTNTGDAKSRQMIRR 63
Query: 119 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 169
A+ ++ + V GC Q S + +++GV IV G Q +++VE VE+ LK H
Sbjct: 64 ARKRNPNSIIAVVGCYAQIASAAVADIDGVDIVIGTQNKNKIVEYVEDYLKNKQQIIDVH 123
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+V L K L++ N+ + I GC CT+C +ARG + S E ++ +
Sbjct: 124 DVMKL--KSFEDLNIASFE-NRTRAFMKIQDGCNNFCTFCIIPYARGAIRSRDKEDVIRQ 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ ++ G E+ L+ T YG D+ + LL + ++ G LRI +
Sbjct: 181 AQELVDKGFVEIVLTGIHTAGYGIDLEDYSFYDLLKDLTNKVK--GLKRLRISSIEMSQV 238
Query: 289 LEHLKEIAEVLRHPCV-YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+I ++ H + LH+P+QSG+D +L M R YT S+F ++ L E +P +
Sbjct: 239 TP---DIINLMAHSSIIVDHLHIPIQSGNDKILKKMARHYTTSEFEEKLNKLKEALPNLS 295
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
+ TD+I GFPGET+EDF T IK+ F Q+H+ + R GTPAARM ++P + KKR
Sbjct: 296 VTTDVIVGFPGETEEDFESTYQWIKKNHFNQLHVFPYSARTGTPAARMPYQIPGDIKKKR 355
Query: 407 SREL 410
+ L
Sbjct: 356 VKRL 359
>gi|307720461|ref|YP_003891601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
DSM 16294]
gi|306978554|gb|ADN08589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
DSM 16294]
Length = 434
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 215/444 (48%), Gaps = 36/444 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ ++++T GC+ N DSE+M QL GY T N E+AD+ LINTC+V+ + +
Sbjct: 2 SKKLFIETLGCAMNSRDSEHMIAQLREKEGYETTQNLEDADLILINTCSVRERPVHKLFS 61
Query: 117 LIAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K KKP + V GC G +K V+ V G + + ++ EV+ + K E
Sbjct: 62 ELGGFKKRKKPSAKIGVCGCTASHLGEEIIKRAPYVNFVLGARNVSKIGEVLHKD-KAVE 120
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + + A D R + + + I++GC CTYC RG S + ++
Sbjct: 121 IDINYDESEFAFD--DFRTSSYKAYINISIGCDKQCTYCIVPKTRGDEISIPDDLIINEA 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG------VNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ + +G KE++L ++ YGR VN LL + + RI T+
Sbjct: 179 KRAVDNGAKEIFLLGQNVNNYGRRFSSSEHEKVNFTELLRRL-----SKIEGLERIRFTS 233
Query: 285 P-PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P PF ++ + I E ++P + +H+P+QSGS VL M R YT F V L +
Sbjct: 234 PHPFHMDD-EFIEEFAKNPKICKSMHMPLQSGSSKVLKEMKRGYTKEWFLNRVQKLRSVC 292
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAV 402
P + I+TDII FPGE+DEDF T++++K+ KF Q+ ++ PRP T A V V
Sbjct: 293 PDVSISTDIIVAFPGESDEDFADTIDVMKQVKFDQIFSFKYSPRPETEAEHFTNVVDEDV 352
Query: 403 VKKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLGY----VQVLVPSTG 453
R L S+ E T YL G R++ + D G + + V +
Sbjct: 353 ASDRLAYLQSLHNELLDEINTKYL---GETFRVYFENLNKDNFVSGRSDNNLVIKVKGSE 409
Query: 454 NMLGTSALVKITSVGRWSVFGEVI 477
+LG VKITS+GR + GE++
Sbjct: 410 ELLGEFRDVKITSIGRTILTGEIV 433
>gi|373455512|ref|ZP_09547343.1| MiaB-like tRNA modifying enzyme [Dialister succinatiphilus YIT
11850]
gi|371934774|gb|EHO62552.1| MiaB-like tRNA modifying enzyme [Dialister succinatiphilus YIT
11850]
Length = 434
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 208/429 (48%), Gaps = 38/429 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ DS+ M GY E+AD++++NTC+V S ++ + + A
Sbjct: 5 TLGCKVNQYDSDAMRTLFIRNGYTQAGEDEDADVYVVNTCSVTSIGDRKSRQMVRRIRRA 64
Query: 125 KKP--LVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLL------ 174
+ VAGC Q + ++ E G IVGVQ +V+ VEE + + + L
Sbjct: 65 HPSAIIAVAGCYAQLAPEVFEKMGDVDVIVGVQNRSHIVDYVEEAMGRTDRKPLNETVDI 124
Query: 175 ----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
H + + +VR FV++ GC CT+C +ARG L S + V +
Sbjct: 125 MKVDHFENMSVDVSGEVRTRAFVKV---QEGCDNYCTFCIIPYARGKLKSRLQKDAVDEI 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R + A G +EV L+ G YG+D+ G +L L+ +V ++P +R+G +
Sbjct: 182 RKLAAQGYREVVLTGIHLGNYGKDLHDGTSLATLVAELV-KIP--NLLRIRLGSVESVEL 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E L I + P V LH+P+QSGSDAVL MNR Y L F+ ++ L VPG+ +
Sbjct: 239 SEDLISIMQ--NEPKVCRHLHLPIQSGSDAVLKGMNRHYRLPQFKKLISELRAKVPGIAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
TD+I GFPGET+E+F +T+ +KE +F +H+ + R GTPAA P+ V + +
Sbjct: 297 TTDLIVGFPGETEENFQETLETLKEIRFSGIHVFPYSRRTGTPAA---SYPNQVTNEVKK 353
Query: 409 ELTSVFEAFTPYLGME------GRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGT 458
E + + ++ GRV + EI DG G Y++V + + G
Sbjct: 354 ERVHRVQELEKEIALDYRKQFMGRVVHVLAEEI-KDGFFEGLSDEYIRVSIRDSHIERGK 412
Query: 459 SALVKITSV 467
V+I ++
Sbjct: 413 MYPVRIDTI 421
>gi|373451917|ref|ZP_09543835.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium sp. 3_1_31]
gi|371967349|gb|EHO84820.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium sp. 3_1_31]
Length = 479
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/440 (28%), Positives = 217/440 (49%), Gaps = 31/440 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC N+ DSE +AG L + ++ E+AD+ L+NTC ++ ++ + I
Sbjct: 46 YLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEIGSL 105
Query: 122 KSAKKP-----LVVAGCVPQGSRD-----LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ + GC+ Q D L++ V+++ G + R+ E++ E + GH+
Sbjct: 106 KRLKRSNPDLIFGLCGCMAQ-EEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYEVMVGHK 164
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V +L ++ +LP R K + I GC CTYC + RG S +E ++
Sbjct: 165 RSVEVLSKEGDVIENLPVRRFGKHKAWVNIMYGCDKFCTYCIVPYTRGKERSRAMEDVLQ 224
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + DG KE+ L ++ +YG+D+ + ++ E G +R ++P
Sbjct: 225 EIRQLKQDGYKEITLLGQNVNSYGKDLHIEGG--FAKLLEETAKIGIERIRFTTSHPWDF 282
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ + ++ + R+ + F+H+PVQSG D +L M R YT + + T+ + E +P I
Sbjct: 283 SDEMIDV--IARYDNIMPFIHLPVQSGDDEILKIMGRRYTNAQYLTLFHKIKERMPECAI 340
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 408
+TDII GFP E++ F T++L+KE +F + PR GTPAARM S VK+ R
Sbjct: 341 STDIIVGFPNESEGQFQHTLDLVKECQFDNAFTFIYSPREGTPAARMADSVSLEVKQ--R 398
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADG-------IHLGYVQV--LVPSTGNML--G 457
L + + Y ++ + ++ DG + GY + LV TG + G
Sbjct: 399 RLAELNACWNQYAHVKNEAYLGKVVKVLVDGASKKKANVWSGYTETNKLVNFTGEHVTAG 458
Query: 458 TSALVKITSVGRWSVFGEVI 477
VKIT+ +S+ GE I
Sbjct: 459 DIVKVKITACKTFSLDGEQI 478
>gi|224476428|ref|YP_002634034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222421035|emb|CAL27849.1| putative radical SAM superfamily protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 513
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 196/383 (51%), Gaps = 18/383 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++KTFGC N D+E MAG A GY L ++ +AD+ L+NTC ++ +++ + + I
Sbjct: 68 TFFIKTFGCQMNAHDTEVMAGIFEALGYTLAEDILKADVILLNTCAIRENAENKVFSEIG 127
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K K+ + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYMSK 187
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ + ++ +LPKVR + F + I GC CTYC RG S + ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 247
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + G +E+ L ++ +YG+D+ ++ L + ++ +R ++P
Sbjct: 248 DEVRDLARQGYQEITLLGQNVNSYGKDLK-DIEYDLGDLFEDISKIDIPRVRFTTSHPWD 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+H+ ++ + + + +H+PVQSG+DAVL M R+YT + +V+ + +P +
Sbjct: 307 FTDHMIDV--IAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIKTAIPDVA 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAARMK V V K R
Sbjct: 365 LTTDIIVGYPNETEEQFQETLSLYDEVEFEHAYTYLYSQRDGTPAARMKDNVEKEVKKDR 424
Query: 407 SRELTSVFEAFTPYL--GMEGRV 427
+ L ++ G EG+V
Sbjct: 425 LQRLNQKVGYYSERALKGYEGQV 447
>gi|398311484|ref|ZP_10514958.1| hypothetical protein BmojR_19315 [Bacillus mojavensis RO-H-1]
Length = 451
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 225/458 (49%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + A + G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDARV--QGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL R + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWI------TEIAADGIHLG----YVQVLVPSTGNMLG 457
L ++ + + E + I E + +++G Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASDYENEVLEIIPEEAFKESDEENMYVGYTDNYMKVVFKGTEDMIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKI G G+ +++ V+D I R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDDITEQMRMSS 451
>gi|239636980|ref|ZP_04677974.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
L37603]
gi|239597330|gb|EEQ79833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
L37603]
Length = 514
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 211/439 (48%), Gaps = 24/439 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I R+ E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + +H+PVQSG++AVL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIKEAIPNIA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F T+ L E F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWI----TEIAADGIHLGYVQ----VLVPSTGNMLGT 458
+ L ++ + E + + + D + GY V + M+G
Sbjct: 426 LQRLNKKVGEYSQKAMSQYENEIVTVLCEGSSKKDDSVLAGYTSKNKLVNFKAPKEMVGK 485
Query: 459 SALVKITSVGRWSVFGEVI 477
VKI ++S+ G I
Sbjct: 486 LVDVKIDEAKQYSLNGTFI 504
>gi|386759140|ref|YP_006232356.1| radical SAM protein [Bacillus sp. JS]
gi|384932422|gb|AFI29100.1| Radical SAM superfamily protein [Bacillus sp. JS]
Length = 451
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL+ + + + +G +RI I
Sbjct: 182 QQLVNAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDSRV--EGVKRIRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 408 RELTSVFEAFTPYLGMEGRVERIWITEIAAD----------GIHLGYVQVLVPSTGNMLG 457
L ++ + + E + I A G Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKI G G+ +++ V D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VGDEITEHMRLSS 451
>gi|418472250|ref|ZP_13042006.1| hypothetical protein SMCF_4988 [Streptomyces coelicoflavus ZG0656]
gi|371547146|gb|EHN75550.1| hypothetical protein SMCF_4988 [Streptomyces coelicoflavus ZG0656]
Length = 505
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 194/385 (50%), Gaps = 26/385 (6%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
S + GT T ++T+GC N DSE ++G L GY A +AD+ + NTC V+
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVREN 66
Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
+ + + + K A +P + V GC+ Q RD +K V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126
Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTM 277
++ V ++A+GV E+ L ++ AYG DIG LL A + +
Sbjct: 187 DRRPGDILAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGL 241
Query: 278 LRIGMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
R+ T+P F + + +AE P LH+P+QSGSD VL AM R Y +
Sbjct: 242 ERVRFTSPHPRDFTDDVITAMAET---PNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLG 298
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394
+++ + +P I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA
Sbjct: 299 IIEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAE 358
Query: 395 MK-KVPSAVVKKRSRELTSVFEAFT 418
M+ ++P AVV++R L ++ E +
Sbjct: 359 MENQIPKAVVQERYERLVALQEEIS 383
>gi|392393735|ref|YP_006430337.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390524813|gb|AFM00544.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 446
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/437 (27%), Positives = 213/437 (48%), Gaps = 31/437 (7%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC ++ D++ + S GY + E+AD+ +INTC V+ +++ + I + K K
Sbjct: 15 YGCQMSERDADTLTEISSQKGYIRSQELEKADLIIINTCCVRESAENKILGKIGELKHLK 74
Query: 126 KP-----LVVAGCVPQGSRDLKELEG--------VSIVGVQQIDRVVEVVEETLKGHEVR 172
+ + ++GC+ Q L+ L + + R++E EE KG
Sbjct: 75 EANPQLKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLLEESEE--KGKVAE 132
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + K +P + K + I+ GC CTYC H RG S E +V +
Sbjct: 133 VWEKPKETQESVPLAEKGKLKAFVNISYGCDNFCTYCIVPHVRGRERSRKPEDIVEEISA 192
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G +EV L ++ +YG+D+ + LL A+ A DG +R ++P + +
Sbjct: 193 LVKTGCREVTLLGQNVNSYGQDLDRAYDFADLLKAVDA---IDGLWRVRFMTSHPKDLSD 249
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L E H C + +H+P Q+GS+ +L +MNR+YT + + + + ++P + T
Sbjct: 250 KLIETIAQGTHLCEH--IHLPFQAGSNEILKSMNRKYTREYYLSRIAKIKAIIPQASLTT 307
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
DII GFPGET+EDF QT++L++E ++ Q + R GTPAA+M +++P + K+R +
Sbjct: 308 DIIVGFPGETEEDFEQTLDLVREVRYSQAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQH 367
Query: 410 LTSV--FEAFTPYLGMEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNMLGTSAL 461
L +V ++ T M G+ + + + G G V+ P ++GT
Sbjct: 368 LINVQNAQSLTWRQEMIGKTYEVLVEGPSKSNPDRLTGRTRGNELVVFPGEAKLMGTLVQ 427
Query: 462 VKITSVGRWSVFGEVIK 478
V I W++FGE ++
Sbjct: 428 VLIQDANSWTLFGECVE 444
>gi|166367538|ref|YP_001659811.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Microcystis
aeruginosa NIES-843]
gi|425440422|ref|ZP_18820724.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9717]
gi|425463534|ref|ZP_18842864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9809]
gi|229890619|sp|B0JVM6.1|MIAB_MICAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|166089911|dbj|BAG04619.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
gi|389719125|emb|CCH96984.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9717]
gi|389831547|emb|CCI25631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9809]
Length = 446
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 217/449 (48%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLIVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDDQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
G VKIT V +S+ G +
Sbjct: 418 TGDIEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|418576319|ref|ZP_13140465.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325381|gb|EHY92513.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 513
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 214/442 (48%), Gaps = 24/442 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
K KK + V GC+ Q ++ LK + V ++ G I R+ E++EE
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G KE+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTHIPNV 363
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
+ TDII G+P ETDE F +T+ L E +F + + R GTPAA+M VP V K
Sbjct: 364 ALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMNDNVPLDVKKD 423
Query: 406 RSRELTSVFEAFT--PYLGMEGRVERIWITEIAA--DGIHLGYVQ----VLVPSTGNMLG 457
R ++L ++ EG+ ++ ++ D + GY V + +M+G
Sbjct: 424 RLQQLNKKVAYYSERAMQQYEGQTVQVLCEGVSKKDDTVLSGYTSKNKLVNFKAPKSMIG 483
Query: 458 TSALVKITSVGRWSVFGEVIKI 479
V I ++S+ G I +
Sbjct: 484 KIVNVYIDEAKQFSLNGTFISV 505
>gi|52425745|ref|YP_088882.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mannheimia
succiniciproducens MBEL55E]
gi|81386786|sp|Q65RW3.1|MIAB_MANSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52307797|gb|AAU38297.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
Length = 474
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 230/454 (50%), Gaps = 37/454 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLQSTHGLELTEEAEQADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G + V I+ G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKKNPNLVIGVGGCVASQEGEHIRERAPYVDIIFGPQTLHRLPEMINQIRAG 121
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ L + ++ D LP+ + + I GC CTYC + RG S ++ +
Sbjct: 122 EKAVLDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPLDDV 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + GV+EV L ++ AY D G+ L +VA + DG LR +
Sbjct: 182 LFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAI--DGIDRLRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
NP +E +I +V R P + SFLH+PVQ+GSD +L+ M R +T ++++++ L +
Sbjct: 240 NP---IEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKLRAV 296
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM------- 395
P +QI++D I GFPGET+E+F QT+NLI++ F + RPGTPAA M
Sbjct: 297 RPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSFSFVYSARPGTPAADMPDDVTEE 356
Query: 396 -KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRV-----ERIWITEIAADGIHLGYVQVLV 449
KK ++++R + F LG E RV + I E+ + V
Sbjct: 357 EKKQRLYILQQRINNQAAQFS--RAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVN--F 412
Query: 450 PSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 483
T +M+G +KIT V S+ G+V++ +Q+
Sbjct: 413 AGTPDMIGKFVDIKITDVFTNSLRGDVVRTEDQM 446
>gi|429759405|ref|ZP_19291904.1| tRNA methylthiotransferase YqeV [Veillonella atypica KON]
gi|429179681|gb|EKY20920.1| tRNA methylthiotransferase YqeV [Veillonella atypica KON]
Length = 435
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 13/367 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G Y D +ADI++INTC+V + + LI
Sbjct: 6 KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 65
Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
K K + ++V GC Q D + ++GV++V G ++VE+VE+ + +
Sbjct: 66 RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 125
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L +K + I GC C +C + RG L S V +V
Sbjct: 126 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVADIVNE 185
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G E+ L+ G YG ++ P L + + A L +R G +
Sbjct: 186 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 244
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I
Sbjct: 245 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 302
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
TDII GFP ETDEDF++T+N +KE F +H + R GTPAA M +VP AV K R
Sbjct: 303 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVA 362
Query: 409 ELTSVFE 415
L + E
Sbjct: 363 LLNDLSE 369
>gi|148263556|ref|YP_001230262.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4]
gi|146397056|gb|ABQ25689.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4]
Length = 444
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 144/441 (32%), Positives = 218/441 (49%), Gaps = 36/441 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ + T GC NQ +S M+ L G+ + + ADI++INTCTV S + + LI
Sbjct: 11 TVAITTLGCKINQFESAAMSEALGKDGFQVIPFDDVADIYVINTCTVTSRTDAESRRLIR 70
Query: 120 KCKSAKKP---LVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL- 173
+ S + P +VV GC Q +L ++ GV+ I+G + + +++E G +V +
Sbjct: 71 RA-SRQNPSARIVVTGCYAQVAFEELSDMPGVNLILGNSEKKGIAALLKEIGDGRQVLVS 129
Query: 174 -LHRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ R+K D + F E L + GC C+YC +ARG S ++ +
Sbjct: 130 DISREK----DAGGAQLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVPLDEALA 185
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+RT A G KEV L+ G YG D+ L +L I AE +R+G P +
Sbjct: 186 GIRTFAAQGFKEVVLTGIHLGGYGLDLTPPLTLLDILIAAE-KQQLVERIRVGSVEPTEV 244
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L IA + V LH+P+QSG+D VLS MNR+Y + FR VV+ L+ +P + I
Sbjct: 245 SDAL--IAFLAGSKLVCPHLHIPLQSGNDQVLSRMNRKYAANLFREVVEKLVCALPDICI 302
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII GFPGE+ E+F Q ++ H+ F PR GTPAA M V S+V+K+R+
Sbjct: 303 GTDIITGFPGESAEEFEQGYRFLESLPVAYFHVFPFSPRTGTPAATMGDHVRSSVIKERA 362
Query: 408 RELTSVFEA-----FTPYLGME------GRVERIWITEIAADGIHLGYVQVLVPSTGNML 456
+ L + E + +LG E R E + G+ Y+ V V +++
Sbjct: 363 KALRKLSEEKKKAYYRTFLGKELPVLIQNREENGML-----KGLSRNYMPVFVKGDDSLI 417
Query: 457 GTSALVKITSVGRWSVFGEVI 477
V+IT V R V GEV+
Sbjct: 418 NNEQRVRITGVVREEVKGEVV 438
>gi|210633082|ref|ZP_03297649.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279]
gi|210159236|gb|EEA90207.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Collinsella stercoris DSM
13279]
Length = 453
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 193/382 (50%), Gaps = 23/382 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +++TFGC N DSE ++G L + G + ++ADI + TC V+ + + +
Sbjct: 10 KTYFIRTFGCQMNLHDSERVSGLLDSLGCLQALDPKDADIVIFMTCCVREAADTRLYGQC 69
Query: 119 AKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG- 168
+ CKS ++ + V GC+ Q G L L+ V ++ G I V +++ +
Sbjct: 70 SSCKSLPASPSGRRVVAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGDLLADAFADG 129
Query: 169 -HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
VR+ A ++P R + +PI GC C+YC + RG S +E +V
Sbjct: 130 DRHVRVEEIDSGAATEMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREKSRPMEEIV 189
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V ++ GV+ V L ++ +YGRD G + P ++ + G + ++P
Sbjct: 190 DEVTGLVRQGVRSVTLLGQNVNSYGRDHG-SAPRFAE-LLRRVGETGVERIYFTSSHPKD 247
Query: 288 IL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+L E + IAEV P V LH+ VQSGS +L MNR+YT + +VD + + +P +
Sbjct: 248 LLPETIDAIAEV---PAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVDRVRDRIPDI 304
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKK 405
+ TDII GFPGET+EDF QTV L+ E KF Q + R GTPAA + P +V+++
Sbjct: 305 ALTTDIIVGFPGETEEDFEQTVTLVDEAKFAQAFTFIYSKRAGTPAAEIDDPTPRSVIQQ 364
Query: 406 RSREL-----TSVFEAFTPYLG 422
R L T+ F+ +LG
Sbjct: 365 RFDRLVRHVETTAFDYNQRFLG 386
>gi|420199076|ref|ZP_14704760.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM031]
gi|394272762|gb|EJE17212.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM031]
Length = 514
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 190/365 (52%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + +EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDIDEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|221194392|ref|ZP_03567449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
49626]
gi|221185296|gb|EEE17686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
49626]
Length = 455
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 189/377 (50%), Gaps = 23/377 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T ++KTFGC N DSE + G L G +++++ADI + TC+V+ + +
Sbjct: 10 KTYHIKTFGCQMNLHDSERVRGLLDVCGCNEVESTDDADIVIFMTCSVRENADQRLYGQA 69
Query: 119 AKCKSAKKP------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ SA P + + GC+ Q G K++ V +V G + V ++
Sbjct: 70 SAMVSAPTPPSGKRVVAIGGCIAQRDGEALKKKVPAVDVVFGTSALASVPSLLSAAFADD 129
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ V K + DLP R F +PI GC CTYC + RG S T E+
Sbjct: 130 DDSVKVDTSEEHKGFSTDLPSHRDQVFHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+VG ++ADGV+E+ L ++ +YGRD+ P + A + G LR +NP
Sbjct: 190 VVGECERLVADGVREITLLGQNVNSYGRDL-YGTPRFAELLRA-VGKTGIERLRFTSSNP 247
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + IA + P V LH+ VQSGS +L MNR YT ++ +V L +P
Sbjct: 248 KDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRILKKMNRSYTREEYLDLVHRLKAAMPD 305
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVK 404
+ +TDII GFPGET+EDF QT++L+KE + + + RPGTPAA+ + S V++
Sbjct: 306 IAFSTDIIVGFPGETEEDFEQTLSLVKEAAYSSAYTFIYSKRPGTPAAKFEDNTSHEVIQ 365
Query: 405 KRSRELTSV-----FEA 416
+R LT + FEA
Sbjct: 366 ERFNRLTDLVAKQAFEA 382
>gi|402298046|ref|ZP_10817770.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
alcalophilus ATCC 27647]
gi|401726690|gb|EJS99906.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
alcalophilus ATCC 27647]
Length = 541
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 232/477 (48%), Gaps = 35/477 (7%)
Query: 31 PKYNKNKPR-LHDNHLSKTGSLSPK----IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF 85
P Y + K R D + + +L P I + ++T+GC N DSE M G L
Sbjct: 65 PDYKQGKRRGKEDVQVIRPDTLIPDDMKTIGQGKKFLIRTYGCQMNVHDSENMTGLLLEM 124
Query: 86 GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP---LVVAGCVPQG--- 137
G++ T+++ EAD+ L+NTC ++ +++ + I K+ K KP L + GC+ Q
Sbjct: 125 GFSETEDTTEADVILLNTCAIRENAENKVFGEIGHLKTLKQEKPELILGICGCMSQEENV 184
Query: 138 -SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFV 193
+R +K+ + + ++ G I R+ +++E + G E + + ++ ++P+ R+ K
Sbjct: 185 VNRIMKKHQHMDLIFGTHNIHRLPHLLKEAIFGKEMVIEVWSKEGDIIENMPRARKGKTQ 244
Query: 194 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253
+ I GC CTYC + RG S E ++ VR + G +EV L ++ AYG+
Sbjct: 245 AWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIAEVRDLARQGYQEVTLLGQNVNAYGK 304
Query: 254 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
D ++ L ++ E+ +R ++P +HL E+ + + + +H+PVQ
Sbjct: 305 DFD-DIDYGLGHLMDEIHKIDIPRVRFTTSHPRDFDDHLIEV--LAKGGNLVEHIHLPVQ 361
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
G+ +L M R+YT + + + + +P TDII GFP ET+E F T++L++E
Sbjct: 362 HGNSQILKLMARKYTRERYIELANKIKNTIPNASFTTDIIVGFPNETEEQFEDTLSLMRE 421
Query: 374 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWI 432
+F + PR GTPAA+MK VP V ++R L ++ + +E + + +
Sbjct: 422 IEFDSAFTYIYSPREGTPAAKMKDNVPDKVKRERLARLNALVNEISAKKNLEYQGK---V 478
Query: 433 TEIAADGIHLGYVQVLVPST-----------GNMLGTSALVKITSVGRWSVFGEVIK 478
E+ +G +VL T + +GT VKI WS+ GE+++
Sbjct: 479 VEVLVEGESKKNPEVLAGRTRTNRLVNFRGPKSAIGTIVYVKINDAKTWSLNGELVE 535
>gi|428310522|ref|YP_007121499.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
gi|428252134|gb|AFZ18093.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
Length = 447
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 225/452 (49%), Gaps = 50/452 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ + + +A++ L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSQDPNDANLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K + A LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 AKRKHEQADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRKDME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + V ++P G +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHLHTLTELLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + +L AM R YT +R ++D + E
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDKIREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402
+P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWENQLSEE 361
Query: 403 VK----KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML 456
VK +R L T +A YL GR+E + + D QV+ + GN L
Sbjct: 362 VKSDRLQRLNHLVSTKAAQASQRYL---GRIEEVLV----EDQNLKDPTQVMGRTKGNRL 414
Query: 457 -----------GTSALVKITSVGRWSVFGEVI 477
G VKIT + +S+ G V+
Sbjct: 415 TFFAGDINELKGQLVKVKITEIRAFSLTGRVL 446
>gi|322689418|ref|YP_004209152.1| hypothetical protein BLIF_1234 [Bifidobacterium longum subsp.
infantis 157F]
gi|320460754|dbj|BAJ71374.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 480
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 196/397 (49%), Gaps = 27/397 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTD--NSEEADIWLINTCTVKSPSQS 112
G ++ T GC N DSE +AG L A GY A D N + D+ ++NTC V+ +
Sbjct: 23 GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEDQINDNDLDLLVLNTCAVRENAAE 82
Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
M I + K +P + V GC+ Q R K++ + + G + I+ + +++
Sbjct: 83 RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 140
Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
++ + ++ ++L LP R ++ + I+VGC CT+C RG
Sbjct: 141 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 200
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
++ +R +ADG KEV L ++ ++G IG LL A DG +
Sbjct: 201 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 257
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R +P + + IA + P + LH P+QSGSD +L AM R Y + F ++
Sbjct: 258 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 315
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
+ E +P QI+TDII GFPGET+EDF QT++++++ +F + PRPGTPAA M+++
Sbjct: 316 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 375
Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
P VV+ R L ++ E T EGR + IT
Sbjct: 376 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 412
>gi|258645507|ref|ZP_05732976.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
15470]
gi|260402861|gb|EEW96408.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
15470]
Length = 478
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 227/442 (51%), Gaps = 31/442 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+SD+E ++GQL GY D ++AD+ ++NTC+++ ++ + I +
Sbjct: 43 FIETYGCQMNESDTERISGQLEELGYVPADILDDADVVILNTCSIRQNAEEKVYGKIGEV 102
Query: 122 KS--AKKP---LVVAGCVPQGSRDLKELEGVSIV----GVQQIDRVVEVVEET-LKGHEV 171
K KKP L +AGC+ Q ++ K +E + ++ G I + ++V +G V
Sbjct: 103 KKLKGKKPGVLLGIAGCMAQENKG-KLIERMPVIDFVIGPYHIHDLKDIVSRRGAEGSHV 161
Query: 172 RLLHRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ D L VR+++ +PI GC CTYC + RG S T++ +
Sbjct: 162 VMTQMNPNRVNDYSELHSVRKSRIFAWVPIMQGCNKFCTYCIVPYVRGRETSRTIDDICR 221
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ + +G KE+ L ++ +YG D G + L++AI DG +R ++P
Sbjct: 222 EIEKLAREGYKEITLLGQNVNSYGLDFHDGTDFGSLIHAIDK---IDGIKRVRYMTSHPK 278
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + + P V +H+PVQ G++ +L MNR YT+ F+ ++ + E +PG+
Sbjct: 279 DMT--FGMVDAMAASPKVVRHMHLPVQHGANEILRRMNRGYTIERFKELLKYVREKMPGI 336
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
+ TD+I GFPGET++ +T+ L+KE KF + + PR GTPAARM +V AV +
Sbjct: 337 TVTTDLITGFPGETEDMHEETLTLLKEMKFDSAYTFIYSPRRGTPAARMTNQVSDAVCHR 396
Query: 406 RSRELTSVFEAFTPYLG--MEGRVERIWI---TEIAAD---GIHLGYVQVLVPSTGNM-L 456
R +E+ +V + L MEG+V + T+ D G G V+ P G++ +
Sbjct: 397 RLQEIMNVENEISLSLNKEMEGKVYTVIAEGETKQNPDNWFGRTSGNKMVIFPKAGSLSV 456
Query: 457 GTSALVKITSVGRWSVFGEVIK 478
G V++ + W + G +++
Sbjct: 457 GDILKVRVDTAQTWILKGTIVE 478
>gi|319778544|ref|YP_004129457.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
gi|317108568|gb|ADU91314.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
gi|399114834|emb|CCG17630.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis 14/56]
Length = 469
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 228/463 (49%), Gaps = 64/463 (13%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
G + +Y+KTFGC N+ DSE MA L A G LTDN E+AD+ L+NTC+++ +Q +
Sbjct: 29 GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKAQEKVF 88
Query: 116 TLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + KK + V GCV +G+ L+ V I+ G Q + R+ E++E+ K
Sbjct: 89 SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146
Query: 168 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R P ++ LP R N + I GC C+YC + RG S +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ V + GVKE+ L ++ AY +G + I A++ EL D + RI
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264
Query: 284 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
+I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV +
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRS 321
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA----- 393
L + PG+ +++D I GFPGET++DF T+ LIK+ + RPGTPAA
Sbjct: 322 LYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSFIYSRRPGTPAADLPDD 381
Query: 394 --------RMKKVPSAVVKKRSRELTS---------VFEAFTPYLGME--GRVERIWITE 434
R++++ A+V K+++E + + E F+ E GR E I
Sbjct: 382 TPYEVKLDRLQRL-QALVNKQAKEFSEKMLGTEQIILVEGFSKRDSNELMGRTENNRIVN 440
Query: 435 IAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477
+ N++G V+IT V S+ GE++
Sbjct: 441 FKG--------------SENLIGQMVPVRITEVYTNSLRGELV 469
>gi|425459253|ref|ZP_18838739.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9808]
gi|389823075|emb|CCI29007.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9808]
Length = 446
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/449 (30%), Positives = 216/449 (48%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 404
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAVWDDQLSEQVKS 364
Query: 405 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML--- 456
+R L T E YL GR+E I + ++ QV+ + GN L
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDAS----QVMGRTRGNRLTFF 417
Query: 457 --------GTSALVKITSVGRWSVFGEVI 477
G VKIT V +S+ G +
Sbjct: 418 TGDIEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|75764337|ref|ZP_00743864.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74488177|gb|EAO51866.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 427
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 210/417 (50%), Gaps = 28/417 (6%)
Query: 86 GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--KSAKKPLVVAGCVPQGS-RDLK 142
GY T+ ++AD+++INTCTV + +I + ++ + V GC Q S ++
Sbjct: 6 GYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRAVRQNPDAVICVTGCYAQTSPAEIM 65
Query: 143 ELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR-LLHRKKLPALDLPKVRRNKFVEIL 196
+ GV IV G Q ++++ +EE K + VR ++ + LD+P ++ L
Sbjct: 66 AIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYEELDVPYFT-DRTRASL 124
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI- 255
I GC CT+C ARG + S + ++ + + ++ G KE+ L+ TG YG DI
Sbjct: 125 KIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKEIVLTGIHTGGYGEDIK 184
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQS 314
NL LL + AE+ G LRI I + E+ EVL + V LH+P+QS
Sbjct: 185 DYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVLDKSEVVVRHLHIPLQS 239
Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
GS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPGET+E+F +T N IKE
Sbjct: 240 GSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPGETEEEFMETYNFIKEN 299
Query: 375 KFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL--GMEGRVERIW 431
+F ++H+ + R GTPAARM+ +VP V R L + EG V I
Sbjct: 300 RFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQLAKEYASAFEGEVLEII 359
Query: 432 ITEIAADGIHLG--------YVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 480
E DG G Y++++ + ++G VKIT G + +++L
Sbjct: 360 PEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKAGYPYNEAQFVRVL 416
>gi|334126695|ref|ZP_08500644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
gi|333391366|gb|EGK62484.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
Length = 433
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 138/444 (31%), Positives = 215/444 (48%), Gaps = 45/444 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M G A GY + AD+++INTC+V S LI +
Sbjct: 7 TLGCKVNQFETETMEGLFRARGYEVVPFDAAADVYVINTCSVTHLSDRKSRQLIRRAART 66
Query: 125 KKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE---------- 170
+ V GC Q +++ L GV +V G ++ R+V+ VE +L+ +E
Sbjct: 67 NPSACIAVTGCYAQVAPEEIRALAGVRVVIGTKERARIVDYVEASLRENEGIAGTITDIM 126
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
R+ + +P LP R L I GC CT+C +ARG + S + ++
Sbjct: 127 QARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRALSAVARE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+R + G EV L+ GAYG D+ + P L +A L + LR+G L
Sbjct: 181 MRLLTEAGFHEVVLTGIHLGAYGIDL-TDRPTLADACRTALAEEKLRRLRLGS------L 233
Query: 290 EHLKEIAEVL----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
E ++ A++L P + LH+P+Q+GSD VL AMNR Y + F ++ + VPG
Sbjct: 234 ESVELSADLLALMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFAQLIAEVRTAVPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVK 404
+ ++TDII GFPGET+EDF + ++ F ++H+ + R GTPAA R +VP AV K
Sbjct: 294 VALSTDIIVGFPGETEEDFATGMEFVRAMGFARMHVFPYSARKGTPAARRADQVPPAVRK 353
Query: 405 KRSRELTSVFEAFTP--YLGMEGRVERIWITEIAA---DGIHLGYVQVLVPS---TGNML 456
KR+ + ++ E + G V + A DG+ YV+V + G +L
Sbjct: 354 KRAARMQALAEEMAEQYHRSQLGSVADVLFETTEAGVTDGLTETYVRVYTDAPVQRGEIL 413
Query: 457 GTSALVKITSVGRWSVFGEVIKIL 480
+++T + R V+GE + L
Sbjct: 414 P----MRLTHLYRDGVWGEPARAL 433
>gi|336234636|ref|YP_004587252.1| MiaB family RNA modification protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|335361491|gb|AEH47171.1| RNA modification enzyme, MiaB family [Geobacillus
thermoglucosidasius C56-YS93]
Length = 451
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 224/458 (48%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VRLL 174
+ ++ + V GC Q S ++ + GV IV G Q +++E VE+ + + +
Sbjct: 63 RAIRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYVEQFQRERRPINAV 122
Query: 175 HR----KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
H + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFS-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + ++ G LRI I
Sbjct: 182 QQLVNAGYKEIVLTGIHTGGYGTDMKDYNFAALLRDLDEQVV--GLKRLRISSIEASQIT 239
Query: 290 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ +VLR + LH+P+QSGS+ VL M R+YT F + L E+ P + I
Sbjct: 240 D---EVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFPELAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
+D+I GFPGET+E+F +T N ++E +F ++H+ + R GTPAARM +V V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEEVKHDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLG----YVQVLVPSTGNMLG 457
R L ++ + EG+V + E + G+++G Y++V P+T M+G
Sbjct: 357 RRLIALSDQLAKEYASQFEGQVLEVIPEERDKENLESGLYIGYTDNYLKVRFPATEEMVG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKIT G GE +++ V D I + ++SS
Sbjct: 417 EIVKVKITKAGYPYNEGEFVRV---VADDIPQSVKLSS 451
>gi|433546738|ref|ZP_20503042.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
agri BAB-2500]
gi|432181958|gb|ELK39555.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
agri BAB-2500]
Length = 503
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 214/441 (48%), Gaps = 32/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+ DSE +AG L GY TD E AD+ L NTC ++ ++ + +
Sbjct: 65 HVRTYGCQMNEHDSETIAGILQQMGYTSTDEVEAADVILFNTCAIRENAEDKVFGELGHM 124
Query: 122 KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 170
K K L V GC+ Q ++ LK + V ++ G I R+ +++ + + E
Sbjct: 125 KRLKNNNPNLILGVCGCMSQEEKVVNKILKSYQQVDLIFGTHNIHRLPQLMRDAMFSKEM 184
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + ++ ++PK+R + I GC CTYC + RG S E ++
Sbjct: 185 VIEVWSKEGDIVENMPKLREGNTKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAE 244
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR + G KE+ L ++ AYG+D ++ ++ E+ +R ++P
Sbjct: 245 VRDLARQGFKEIMLLGQNVNAYGKDFD-DIEYGFGDLLDEIRKIDIPRIRFTTSHPRDFD 303
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + +P + ++
Sbjct: 304 DHLIEV--LAKGGNLVEQIHLPVQSGSTEILKRMARKYTREHYLELVRKIKAAIPNVSLS 361
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TDII GFPGETDE F +T++L++E ++ + + PR GTPAA M+ VP V K R
Sbjct: 362 TDIIVGFPGETDEQFEETISLVEEVRYDSAYTFIYSPREGTPAAVMEDNVPMEVKKARLY 421
Query: 409 ELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLGYVQVLVPST-----------GNML 456
L V +G+E + + + E+ +G VL T +++
Sbjct: 422 RLNEVL----ARIGLEQNKKLQDQVLEVLIEGESKNNPDVLAGRTRTNKLVHFTADKSLI 477
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G VKIT W++ GE++
Sbjct: 478 GEYVHVKITDAKTWTLHGELV 498
>gi|417656560|ref|ZP_12306243.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU028]
gi|329736221|gb|EGG72493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU028]
Length = 514
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLDQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|238927480|ref|ZP_04659240.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
43531]
gi|238884762|gb|EEQ48400.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
43531]
Length = 437
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 207/451 (45%), Gaps = 61/451 (13%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GY T+ + +AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQAAGYVRTEETADADVILINTCCVRETAEDKVYGKIGEIKKVK 69
Query: 126 KP-----LVVAGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVEVVEETLKGHEVRLL 174
+ + GC+ Q G ++ + V VQ++ R+V +
Sbjct: 70 ERHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAA---------- 119
Query: 175 HRKKLPALD-----------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
K+ P +D LP R +PI GC CTYC + RG S
Sbjct: 120 --KRTPVVDVALDARAVEEHLPIARSGTLSAWVPIMYGCNNYCTYCIVPYVRGRERSRMP 177
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGM 282
E +V VR ADG +EV L ++ +YG+D G + LL + A +G +R
Sbjct: 178 EEVVAEVRRAAADGYREVTLLGQNVNSYGKDHGQADFADLLRMVDA---VEGIRRVRFMT 234
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
++P I + L + + H C +H+PVQ GS+ +L AMNR YT+ +R + E
Sbjct: 235 SHPKDISDKLIDTIKNGTHIC--EHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVREA 292
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 401
+PG + TD+I GFPGET+EDF +T++ ++E ++ + + R GTPAA M +VP
Sbjct: 293 LPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPDE 352
Query: 402 VVKKR-----------SRELTSVFEAFTPYLGMEGRVER---IWITEIAADGIHLGYVQV 447
V R SR + + + +EG + +W + I V
Sbjct: 353 VKHARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKI------V 406
Query: 448 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478
L P +G VKIT W + GEV++
Sbjct: 407 LFPHGAERVGDFVQVKITQPQTWVLKGEVVR 437
>gi|401564532|ref|ZP_10805419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC6]
gi|400188742|gb|EJO22884.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC6]
Length = 437
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/437 (29%), Positives = 208/437 (47%), Gaps = 35/437 (8%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL GY T+ + +ADI LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQGAGYMRTEETADADIILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIAAEHTSVVDVAL 129
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
A +LP R KF +PI GC CTYC + RG S + E +V V+ +A
Sbjct: 130 SDSEIAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRSPEEVVAEVQRAVA 189
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 190 EGYREVTLLGQNVNSYGKDHKAADFADLLRMVDEV--EGIRRVRFMTSHPKDIGDKLIDT 247
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ H C + +H+PVQ GS +L AMNR YT+ +R + E +P + TD+I G
Sbjct: 248 IKNGTHICEH--IHLPVQYGSSRILKAMNRGYTVERYRERALRVRESLPEASLTTDLIVG 305
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR-------- 406
FPGETDEDF + ++ +++ ++ + + R GTPAA M ++VP V +R
Sbjct: 306 FPGETDEDFAEMLSFLRDMRYDSAYTFLYSKRSGTPAATMAEQVPDDVKHERLNALMEAQ 365
Query: 407 ---SRELTSVFEAFTPYLGMEGRVER---IWITEIAADGIHLGYVQVLVPSTGNMLGTSA 460
SRE+ T + +EG + +W + I VL P G
Sbjct: 366 NTISREINEQLLGRTLEVMVEGASKNDPTVWSGRTRTNKI------VLFPHGAEQEGDFV 419
Query: 461 LVKITSVGRWSVFGEVI 477
V++T W + GE++
Sbjct: 420 QVRVTQPQTWVLKGEIV 436
>gi|399055630|ref|ZP_10743325.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Brevibacillus sp. CF112]
gi|398046839|gb|EJL39423.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Brevibacillus sp. CF112]
Length = 504
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 214/441 (48%), Gaps = 32/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+ DSE +AG L GY TD E AD+ L NTC ++ ++ + +
Sbjct: 66 HVRTYGCQMNEHDSETIAGILQQMGYTSTDEVEAADVILFNTCAIRENAEDKVFGELGHM 125
Query: 122 KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 170
K K L V GC+ Q ++ LK + V ++ G I R+ +++ + + E
Sbjct: 126 KRLKNNNPNLILGVCGCMSQEEKVVNKILKSYQQVDLIFGTHNIHRLPQLMRDAMFSKEM 185
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + ++ ++PK+R + I GC CTYC + RG S E ++
Sbjct: 186 VIEVWSKEGDIVENMPKLREGNTKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAE 245
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR + G KE+ L ++ AYG+D ++ ++ E+ +R ++P
Sbjct: 246 VRDLARQGFKEIMLLGQNVNAYGKDFD-DIEYGFGDLLDEIRKIDIPRIRFTTSHPRDFD 304
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + +P + ++
Sbjct: 305 DHLIEV--LAKGGNLVEQIHLPVQSGSTEILKRMARKYTREHYLELVRKIKAAIPNVSLS 362
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TDII GFPGETDE F +T++L++E ++ + + PR GTPAA M+ VP V K R
Sbjct: 363 TDIIVGFPGETDEQFEETISLVEEVRYDSAYTFIYSPREGTPAAVMEDNVPMEVKKARLY 422
Query: 409 ELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLGYVQVLVPST-----------GNML 456
L V +G+E + + + E+ +G VL T +++
Sbjct: 423 RLNEVL----ARIGLEQNKKLQDQVLEVLIEGESKNNPDVLAGRTRTNKLVHFTADKSLI 478
Query: 457 GTSALVKITSVGRWSVFGEVI 477
G VKIT W++ GE++
Sbjct: 479 GEYVHVKITDAKTWTLHGELV 499
>gi|404495733|ref|YP_006719839.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
[Geobacter metallireducens GS-15]
gi|418066379|ref|ZP_12703743.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
RCH3]
gi|78193349|gb|ABB31116.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
[Geobacter metallireducens GS-15]
gi|373560640|gb|EHP86897.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
RCH3]
Length = 431
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 209/430 (48%), Gaps = 32/430 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDT 116
+ + + T GC NQ +S M L G+ + E+ADI++INTCTV K+ ++S
Sbjct: 2 QRVAISTLGCKINQFESAAMTESLGREGFRVVPFDEDADIYVINTCTVTAKTDAESRRLI 61
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL- 173
A ++ +VV GC Q + D +K+L GV+ +VG + + E++ + +V +
Sbjct: 62 RRALRRNPAARVVVTGCYAQVAPDAVKDLPGVALVVGNSEKRSIGELLRDAAPAEKVMVS 121
Query: 174 -LHRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ R++ +R F E L + GC C+YC +ARG S + +
Sbjct: 122 DISRERTA----EGLRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSFSEALA 177
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+R A G +EV L+ GAYG D+ NL LL A AE LR+G P
Sbjct: 178 GIRNFAAQGFREVVLTGIHLGAYGLDLAPPTNLLALLEASEAE---KAVPRLRVGSVEPN 234
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + L + + R V LH+P+QSG D VL M R YT + FR V+ L+ +VP +
Sbjct: 235 ELTDALVDF--LARSETVCPHLHIPLQSGDDRVLERMGRRYTAAFFRERVERLVAVVPDI 292
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
I D+I GFPGETDE+F TV LI+E +H+ + R GT AARM+ +V V++
Sbjct: 293 FIGCDVIAGFPGETDEEFQNTVRLIEELPVASLHVFPYSRREGTAAARMEGQVDGKVIRG 352
Query: 406 RSRELTSVFE----AFTPYLGMEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLG 457
R+ L V E +F GR + + DG +G Y+ V VP +
Sbjct: 353 RAEILREVGERKRRSFCERF--VGRELAVLMQNRGRDGEAVGLSRNYLPVRVPGYAGEMN 410
Query: 458 TSALVKITSV 467
A V +T V
Sbjct: 411 AEATVMVTEV 420
>gi|226312967|ref|YP_002772861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
brevis NBRC 100599]
gi|226095915|dbj|BAH44357.1| probable tRNA methylthiotransferase [Brevibacillus brevis NBRC
100599]
Length = 503
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/440 (28%), Positives = 217/440 (49%), Gaps = 30/440 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+ DSE ++G L A GY +D+ E+AD+ L NTC ++ ++ + +
Sbjct: 65 HVRTYGCQMNEHDSETISGILQAMGYTSSDSVEDADVILFNTCAIRENAEDKVFGELGHM 124
Query: 122 KSAKKP-----LVVAGCVPQGSR----DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 170
K K L V GC+ Q + LK + V ++ G I R+ E++ + + E
Sbjct: 125 KRLKNNNPNLILGVCGCMSQEEKVVKKILKSYQQVDLIFGTHNIHRLPELLRDAMFSKEM 184
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + ++ ++PK+R + I GC CTYC + RG S E ++
Sbjct: 185 VIEVWSKEGDIVENMPKLREGNTKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAE 244
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR + G KE+ L ++ AYG+D ++ ++ E+ +R ++P
Sbjct: 245 VRDLARQGFKEIMLLGQNVNAYGKDFE-DIKYGFGDLMDEIRKIDIPRVRFTTSHPRDFD 303
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+HL E+ + + + +H+PVQSGS VL M R+Y+ + +V + + +P + ++
Sbjct: 304 DHLIEV--LAKGGNLVEQIHLPVQSGSTEVLKRMARKYSREHYLELVRKIKDAIPNVSLS 361
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TDII GFPGETDE F T+++++E K+ + + PR GTPAA M+ VP V K R
Sbjct: 362 TDIIVGFPGETDEQFEDTISMVEEVKYDFAYTFIYSPREGTPAAVMEDNVPMEVKKARLY 421
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQV---------LVPSTGN--MLG 457
L V L +++ + E+ +G +V LV TG+ ++G
Sbjct: 422 RLNEVLAGIA--LEQNKKLQD-QVVEVLVEGESRTNAEVLAGRTRTNKLVHFTGDKSLIG 478
Query: 458 TSALVKITSVGRWSVFGEVI 477
+KIT W++ GE++
Sbjct: 479 QYVHIKITDAKTWTLHGELV 498
>gi|407795674|ref|ZP_11142632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salimicrobium
sp. MJ3]
gi|407020015|gb|EKE32729.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salimicrobium
sp. MJ3]
Length = 518
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 219/442 (49%), Gaps = 39/442 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG GY T +EEADI L+NTC ++ +++ + I K
Sbjct: 79 IRTYGCQMNEHDTEVMAGIFETMGYEPTKQAEEADIILLNTCAIRENAENKVFGEIGHLK 138
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
S K+ L V GC+ Q +R L++ + ++ G I ++ E+++E + E
Sbjct: 139 SLKRENPDLILGVCGCMAQEEGVVNRILQKHPFIDMIFGTHNIHKIPELLKEAMFSKEMV 198
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + ++ +LP+ R+ K + + GC CTYC + RG S E ++ V
Sbjct: 199 IDVWSKEGDIIENLPRSRKGKIKAWVNVMYGCDKFCTYCIVPYTRGKERSRLPEDIIQEV 258
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + A G KEV L ++ AYG+D+ +L L ++ +L +R ++P +
Sbjct: 259 RHLAAQGYKEVTLLGQNVNAYGKDL--DLDYGLGDLMDDLHKIDIPRVRFTTSHPRDFDD 316
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L E+ + + + +H+PVQSGS VL M R+Y+ D+ +V + +P + T
Sbjct: 317 RLIEV--LAKGGNMLDHIHLPVQSGSSDVLKIMGRKYSREDYMELVRKIRAAMPDATLTT 374
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS---------- 400
DII GFP ET+E F +T++L++E F + F PR TPAA+M+ S
Sbjct: 375 DIIVGFPNETEEQFQETLSLVEEVGFEAAYTFIFSPRENTPAAKMRDKVSMEEKKERLQR 434
Query: 401 --AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQ--VLVPSTG--N 454
A++ K++RE +E ++ +EG + + GY + LV G +
Sbjct: 435 LNALINKQARETMETYENEIVHVLVEGESKN-------NPDVLAGYTKRNKLVNFVGPES 487
Query: 455 MLGTSALVKITSVGRWSVFGEV 476
+G V+IT WS+ GE+
Sbjct: 488 AIGNIVPVRITKAKTWSLDGEM 509
>gi|427720831|ref|YP_007068825.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 7507]
gi|427353267|gb|AFY35991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 7507]
Length = 454
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 218/452 (48%), Gaps = 46/452 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ +Q + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADLILYNTCTIRDNAQHKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L++AGCV Q G L+ + + +V G Q +R+ +++E L+G++V
Sbjct: 69 AKRKHEQPNLKLILAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLESVLEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 129 TEAVHIME-DITQPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAIRAEIE 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KE+ L ++ AYGRD+ G +L L + + G +R ++P
Sbjct: 187 ALGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYIHDVPGIERIRFATSHP 246
Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+ E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+ +P
Sbjct: 247 RYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRYMP 303
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 404
I+ D I GFPGET+ F T+ L + F ++ + + PRPGTPAA S VK
Sbjct: 304 DASISADAIVGFPGETEAQFENTLKLTADIGFDMLNTAAYSPRPGTPAALWDNQLSEEVK 363
Query: 405 ----KRSRELTS--VFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-- 456
+R L + V E Y GR+E + + D QV+ + GN L
Sbjct: 364 SDRLQRLNHLVNVKVAERSQRYF---GRIEEVLV----EDQNPKDKTQVMGRTRGNRLTF 416
Query: 457 ---------GTSALVKITSVGRWSVFGEVIKI 479
G VKIT V +S+ GE +++
Sbjct: 417 FTGDINQIKGQVVKVKITEVRPFSLTGEPVEV 448
>gi|344995956|ref|YP_004798299.1| MiaB family RNA modification protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964175|gb|AEM73322.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 434
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 225/443 (50%), Gaps = 36/443 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K
Sbjct: 3 IAFYTLGCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKK 62
Query: 121 CK--SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K S + +VV GC PQ ++++++E V I+ G + R+V+ V + L+ +
Sbjct: 63 AKKLSPQSIVVVMGCYPQVYPQEVEKIEDVDIIIGTKDRQRIVDYVRQYLED-------K 115
Query: 177 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 224
KK+ A+D + +R F E+ + I GC C+YC +ARG + S ++
Sbjct: 116 KKIVAID-GEYKREAFEELKISEFNEHSRAFIKIEEGCDQFCSYCIIPYARGAVRSRGLK 174
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+ VR ++ G KE ++ + AYG+D+ + L++ I +G +R+
Sbjct: 175 SIEEEVRRLVQKGYKEFVITGINISAYGKDLDGKVT-LIDVIERVNEIEGVKRIRLSSLE 233
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + + I +L + LH+ +QSGSD +L MNR YT + ++ +VD + E
Sbjct: 234 PVIMNDEF--IERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRIREKWE 291
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
+ TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ GT A M +V S
Sbjct: 292 DVAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEK 351
Query: 404 KKRSRELTSV-----FEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPSTGNML 456
++RS+ + V ++ ++G +E +E+ + +G Y++ LV + ++
Sbjct: 352 ERRSKIMKEVAANLAYQFHKKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIV 411
Query: 457 -GTSALVKITSVGRWSVFGEVIK 478
G VKIT V GE+I+
Sbjct: 412 PGEIYKVKITQAYEQYVKGEIIQ 434
>gi|347820329|ref|ZP_08873763.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 447
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 200/388 (51%), Gaps = 20/388 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+++KTFGC N+ DS+ MA L +A GY T N +EAD+ L NTC+V+ +Q + + +
Sbjct: 5 VFIKTFGCQMNEYDSDKMADVLRAAQGYETTRNLDEADLILFNTCSVREKAQEKVFSDLG 64
Query: 120 KCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVE--ETLKGHEV 171
+ K K V V GCV +G++ ++ V +V G Q + R+ E++E E L +V
Sbjct: 65 RVKHLKARGVRIGVGGCVASQEGAQIIERAPYVDLVFGPQTLHRLPEMLEQCERLDRAQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ + LP R + + GC C+YC + RG S + ++ V
Sbjct: 125 DISFPEIEKFDHLPPARVEGASAFVSVMEGCSKYCSYCVVPYTRGEEVSRPFDDVLVEVA 184
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNPPF 287
+ GVKEV L ++ A+ +G + LL VAE+P G +R ++P
Sbjct: 185 GLAEQGVKEVTLLGQNVNAFRGRMGDTAELADFALLLEYVAEIP--GIERIRFTTSHPNE 242
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
L I R P + S LH+PVQ GSD +L AM R YT ++++ V L + P +
Sbjct: 243 FTPRL--IGAYARIPKLASHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRKLRAIRPALA 300
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV-PSAVVKKR 406
+++D I GFPGET +DF++T+ LI E F F PRPGTPAA + P AV +R
Sbjct: 301 LSSDFIVGFPGETQDDFDKTMRLIDEIGFDNSFSFLFSPRPGTPAASLHDATPHAVKLRR 360
Query: 407 SRELTSVFEAFTPYL--GMEGRVERIWI 432
++L V +A L G+ G V+RI +
Sbjct: 361 LQQLQGVIDANIQSLSAGLVGTVQRILV 388
>gi|417642888|ref|ZP_12292968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
VCU121]
gi|445059788|ref|YP_007385192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
warneri SG1]
gi|330686356|gb|EGG97959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU121]
gi|443425845|gb|AGC90748.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
warneri SG1]
Length = 514
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 211/439 (48%), Gaps = 24/439 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I R+ E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + +H+PVQSG++AVL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIKEAIPNIA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F T+ L E F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEDTLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVPTDVKKER 425
Query: 407 SRELTSVFEAFTPYLGMEGRVERIWI----TEIAADGIHLGYVQ----VLVPSTGNMLGT 458
+ L ++ + E + + + D + GY V + M+G
Sbjct: 426 LQRLNKKVGEYSQKAMSQYENEIVTVLCEGSSKKDDTVLAGYTSKNKLVNFKAPKEMVGK 485
Query: 459 SALVKITSVGRWSVFGEVI 477
VKI ++S+ G I
Sbjct: 486 LVDVKIDEAKQYSLNGTFI 504
>gi|429759389|ref|ZP_19291888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella atypica KON]
gi|429179665|gb|EKY20904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella atypica KON]
Length = 426
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 215/431 (49%), Gaps = 30/431 (6%)
Query: 71 NQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KP 127
N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I + K K K
Sbjct: 2 NTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRIGELKRLKQKNKN 61
Query: 128 LVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL---LHRKKL 179
L++A GC+ Q ++ K + IV G I + E++ E + H+ ++ + L
Sbjct: 62 LIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHKHQINVDMDNTVL 121
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P L F +PI GC CTYC H RG S VE++V V + A G K
Sbjct: 122 PELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKEVTELGAKGFK 179
Query: 240 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
E+ L ++ +YG D G + L++A+ +P G +R ++P + + + I
Sbjct: 180 EITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHPQDMTKSM--IDA 234
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ R + + LH+P+QSGSD +L MNR YT+ ++ ++ E + + + TDII GFP
Sbjct: 235 LGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKNVVVTTDIIVGFP 294
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 416
GET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V + R ++L +
Sbjct: 295 GETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKRVRLQQLMDIQNE 354
Query: 417 FTPYLG--MEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNM-LGTSALVKITSV 467
+ L MEG+V I + +A G G VL P + +G + I
Sbjct: 355 ISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELTIGDTVPAYIDKA 414
Query: 468 GRWSVFGEVIK 478
W +G + K
Sbjct: 415 QTWVCYGTIQK 425
>gi|147677673|ref|YP_001211888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelotomaculum
thermopropionicum SI]
gi|229890589|sp|A5D2K1.1|MIAB_PELTS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|146273770|dbj|BAF59519.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
Length = 448
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 194/368 (52%), Gaps = 29/368 (7%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK--S 123
FGC N+ DSE +AG L + GY NSE+ DI LINTC V+ +++ + +L+ + +
Sbjct: 9 FGCQMNEHDSEVLAGILESMGYCQAGNSEDPDIILINTCCVRKTAENKVFSLLGRLRRQK 68
Query: 124 AKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLH 175
A+ P + V GC+PQ + ++ + I G + ++ E++ + ++G + L
Sbjct: 69 AQNPNLIIGVCGCMPQQEGMAERIKQLFPHVDLIFGTHNVHQLPELIGKVIEGQKQVL-- 126
Query: 176 RKKLPAL------DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ P +LP R+ + I GC CTYC + RG S + E++
Sbjct: 127 -EIWPGYGGELREELPVKRKEGVRAWVTIMYGCNNFCTYCIVPYVRGREKSRSPEAVYEE 185
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIGMTNP-P 286
V + +G KEV L ++ +YG+D+GV + LL ++ DG +R ++P
Sbjct: 186 VARLAGEGFKEVILLGQNVNSYGKDLGVKTDFASLLESLEN---IDGIDRIRYMTSHPRD 242
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
F L ++ IA + V H+PVQ+GS+ +L MNR YT ++ ++ + L+P
Sbjct: 243 FSLRLVEAIAASKK---VCEHFHLPVQAGSNRILKKMNRGYTREEYVDLIRYIKSLIPHA 299
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 405
+ TDI+ GFPGETDEDFN T++L++E +F + + RPGTPAA M +V V K+
Sbjct: 300 TVTTDIMVGFPGETDEDFNDTLDLVREIRFDSAYTFVYNIRPGTPAAEMPDQVAENVKKE 359
Query: 406 RSRELTSV 413
R + L +
Sbjct: 360 RIQALIKL 367
>gi|325847803|ref|ZP_08170025.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480821|gb|EGC83874.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 432
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 208/413 (50%), Gaps = 45/413 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++T +KT GC NQ +SE + G+ +++ ADI++INTCTV + S
Sbjct: 2 SKTFNIKTLGCKVNQYESEAIEELFKKRGFEKKEDN--ADIYVINTCTVTNMSDRKSRQT 59
Query: 118 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
I+K + K ++A GC Q D +KE+EGV IV G + + VV++ E + H
Sbjct: 60 ISKARKENKDAIIAVIGCYSQVKGDEVKEIEGVDIVLGSRNKEEVVDLCENFINDH---- 115
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 220
+ D+ + + + +E L I+ GC C+YC +ARG++ S
Sbjct: 116 -----VKTKDVEEFKIGEAIEDLEISNQADMTRAYIKIQDGCNMYCSYCLIPYARGNIAS 170
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
+ S++ + + +G KE+ L+ +YG+D+ +N+ L++ I DG +R+
Sbjct: 171 RDLVSIIDEAKRLRDNGFKEIVLTGIHVASYGKDLDLNIS-LIDVIEHISKIDGIERIRL 229
Query: 281 GMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
P I L+ +K+ + H H+ +QSGSD VL MNR+Y F+ V
Sbjct: 230 SSMEPRHIDREFLQRMKDTKKACDH------FHLSLQSGSDDVLKLMNRKYDTKIFKEKV 283
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
D + E P + TDII GFP E++++ QT + +++ KF + H+ ++ R GT AA MK
Sbjct: 284 DLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRDIKFSKTHLFKYSKRDGTKAASMK 343
Query: 397 -KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLGY 444
+V K+RS+EL SV E + ++ ++ + ++ T+ DG GY
Sbjct: 344 DQVDGNTKKRRSKEL-SVIEKKNSHEFLDNQIGKTLSVLFETKTELDGYKSGY 395
>gi|312110172|ref|YP_003988488.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
gi|423719206|ref|ZP_17693388.1| RNA modification enzyme, miaB family [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215273|gb|ADP73877.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
gi|383368109|gb|EID45384.1| RNA modification enzyme, miaB family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 451
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 224/458 (48%), Gaps = 31/458 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VRLL 174
+ ++ + V GC Q S ++ + GV IV G Q +++E VE+ + + +
Sbjct: 63 RAIRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYVEQFQRERRPINAV 122
Query: 175 HR----KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
H + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFS-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N LL + ++ G LRI I
Sbjct: 182 QQLVNAGYKEIVLTGIHTGGYGTDMKDYNFAALLRDLDEQVV--GLKRLRISSIEASQIT 239
Query: 290 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ +VLR + LH+P+QSGS+ VL M R+YT F + L E+ P + I
Sbjct: 240 D---EVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFPELAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
+D+I GFPGET+E+F +T N ++E +F ++H+ + R GTPAARM +V V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEDVKHDRV 356
Query: 408 RELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLG----YVQVLVPSTGNMLG 457
R L ++ + EG+V + E + G+++G Y++V P+T M+G
Sbjct: 357 RRLIALSDQLAKEYASQFEGQVLEVIPEERDKENLESGLYIGYTDNYLKVRFPATEEMVG 416
Query: 458 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
VKIT G GE +++ V D I + ++SS
Sbjct: 417 EIVKVKITKAGYPYNEGEFVRV---VADDIPQSVKLSS 451
>gi|206890169|ref|YP_002248877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|229891018|sp|B5YKW2.1|MIAB_THEYD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206742107|gb|ACI21164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 431
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 215/431 (49%), Gaps = 21/431 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+KTFGC N+ DSE M G L G+ D ++ADI + NTC ++ ++ + + +
Sbjct: 6 VYIKTFGCQMNEHDSERMLGILGTKGFIEVDEPKKADIVIFNTCAIRHKAEQKFFSSLGR 65
Query: 121 CKSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR 172
K KK ++VAGC Q G + L +L + I+G + V+E + E H +
Sbjct: 66 VKHLKKKNPQLKIIVAGCSAQLQGEKLLNKLPYIDYIIGPDNL-HVIENIIENQVSHRIF 124
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ ++LP R++ + I GC CTYC + RG S V+ ++ +
Sbjct: 125 TDENPEVANINLPVKRKDCVKAWVNIIYGCNNYCTYCVVPYTRGKERSRPVDDIIKEISL 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ G KEV L ++ +Y +D N P+LL + +G +R ++P + + L
Sbjct: 185 LAEQGYKEVTLLGQNVNSY-KDGNTNFPLLLEKVEK---IEGIKRIRFITSHPKDLSKEL 240
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ + + C + +H+P+Q+GS+ +L MNR+YT ++ + L E +P + I +DI
Sbjct: 241 VDVMKDYKKICEH--IHLPLQAGSNKILKLMNRKYTYEEYFEKICWLREAIPDIAITSDI 298
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KRSRELT 411
I GFP E EDF +T+N +KE +F + +F PR GT AA++ S VK R E+
Sbjct: 299 IVGFPQEQHEDFEKTINALKEIRFDGIFAFKFSPRLGTAAAKLDGHISEEVKAARLIEVL 358
Query: 412 SVFEAFTPYLG--MEGRVERIWITEIAADGIHLGYV---QVLVPSTGNMLGTSALVKITS 466
+ + T +EG+++ + + +G G +V+ + G VKI
Sbjct: 359 KLQDEITERKNKRLEGKIQEVLVEGKDEEGFTTGKTRTNKVVKIYSDIKAGEIVNVKIAK 418
Query: 467 VGRWSVFGEVI 477
R S+ G++I
Sbjct: 419 THRHSLEGDII 429
>gi|197118030|ref|YP_002138457.1| MiaB-like tRNA-modifying enzyme [Geobacter bemidjiensis Bem]
gi|197087390|gb|ACH38661.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
[Geobacter bemidjiensis Bem]
Length = 429
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 218/437 (49%), Gaps = 27/437 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++TI + T GC NQ +S M L GY++ S++ADI++IN+CTV + + + L
Sbjct: 2 SKTIAITTLGCKINQFESAAMTQALEQNGYSMVPFSDKADIYVINSCTVTAKTDAESRRL 61
Query: 118 IAKCK--SAKKPLVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
I + + + +VV GC Q + +L +L GV+ I+G + +V +E G + +
Sbjct: 62 IRRATRLNPEARVVVTGCYAQMNAEELLKLAGVNLILGNSEKKDIVGFLE----GMDDQ- 116
Query: 174 LHRKKLPALDLPKVRRNKFVE--------ILPINVGCLGACTYCKTKHARGHLGSYTVES 225
R + + L K +E L + GC C YC +ARG S V+
Sbjct: 117 -PRAVVSDISLEKTGDTAPLETFAEHTRAFLQVQNGCDARCAYCIVPYARGASRSVAVQE 175
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM-LRIGMTN 284
+ + A G +E+ L+ GAYG D+ +L ++ + G LRIG
Sbjct: 176 ALDGMAAFAAQGFQEIVLTGIHLGAYGLDLAPATDLL--GLMQKAQEQGVVRRLRIGSVE 233
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + + L I + R P V LH+P+QSGSD+VLS MNR Y + FR VV +L +P
Sbjct: 234 PTEVSKQL--IDFMARSPMVCPHLHLPLQSGSDSVLSRMNRGYDTALFREVVQSLASAMP 291
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
+ I +D+I GFPGE+D++F++T I +H+ F RPGTPAA M +V V+
Sbjct: 292 EVCIGSDVIAGFPGESDQEFDETYRFIDSLPLAYLHVFPFSQRPGTPAATMTPQVHPKVI 351
Query: 404 KKRSRELTSVFE-AFTPY-LGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSAL 461
K+R+ L + E + Y G GR R+ + + G+ Y+ VL+ + ++
Sbjct: 352 KERAEALRVLSERKKSDYAAGFVGRELRVLVQK-GEKGLSRNYLTVLIEESKGLVNREVT 410
Query: 462 VKITSVGRWSVFGEVIK 478
V++T + G V+K
Sbjct: 411 VQVTGAKDGELVGRVLK 427
>gi|398814318|ref|ZP_10572999.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Brevibacillus sp. BC25]
gi|398036587|gb|EJL29796.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Brevibacillus sp. BC25]
Length = 504
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 125/440 (28%), Positives = 217/440 (49%), Gaps = 30/440 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+ DSE ++G L A GY +D+ E+AD+ L NTC ++ ++ + +
Sbjct: 66 HVRTYGCQMNEHDSETISGILQAMGYTSSDSVEDADVILFNTCAIRENAEDKVFGELGHM 125
Query: 122 KSAKKP-----LVVAGCVPQGSR----DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 170
K K L V GC+ Q + LK + V ++ G I R+ E++ + + E
Sbjct: 126 KRLKNNNPNLILGVCGCMSQEEKVVKKILKSYQQVDLIFGTHNIHRLPELLRDAMFSKEM 185
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + ++ ++PK+R + I GC CTYC + RG S E ++
Sbjct: 186 VIEVWSKEGDIVENMPKLREGNTKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAE 245
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR + G KE+ L ++ AYG+D ++ ++ E+ +R ++P
Sbjct: 246 VRDLARQGFKEIMLLGQNVNAYGKDFE-DIEYGFGDLMDEVRKIDIPRVRFTTSHPRDFD 304
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+HL E+ + + + +H+PVQSGS VL M R+Y+ + +V + + +P + ++
Sbjct: 305 DHLIEV--LAKGGNLVEQIHLPVQSGSTEVLKLMARKYSREHYLELVRKIKDAIPNVSLS 362
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 408
TDII GFPGETDE F T+++++E K+ + + PR GTPAA M+ VP V K R
Sbjct: 363 TDIIVGFPGETDEQFEDTISMVEEVKYEFAYTFIYSPREGTPAAVMEDNVPMEVKKARLY 422
Query: 409 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQV---------LVPSTGN--MLG 457
L V L +++ + E+ +G +V LV TG+ ++G
Sbjct: 423 RLNEVLARIA--LEQNKKLQD-QVVEVLVEGESRTNAEVLAGRTRTNKLVHFTGDKSLIG 479
Query: 458 TSALVKITSVGRWSVFGEVI 477
+KIT W++ GE++
Sbjct: 480 QYVHIKITDAKTWTLHGELV 499
>gi|344996160|ref|YP_004798503.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Caldicellulosiruptor lactoaceticus 6A]
gi|343964379|gb|AEM73526.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Caldicellulosiruptor lactoaceticus 6A]
Length = 471
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 195/399 (48%), Gaps = 44/399 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I
Sbjct: 39 HIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPL 98
Query: 122 K--SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGH 169
K KKP + V GC+PQ ++L + I G + + + +++ T K
Sbjct: 99 KRLKDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKT 158
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + + + +P RR + I GC C+YC + RG S E ++
Sbjct: 159 VIDVSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYE 218
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAI-----------VAELPPDGST 276
+ + +GVKEV L ++ +YG+D+G + P LL + V P D S
Sbjct: 219 IEQLAQNGVKEVTLLGQNVNSYGKDLGNGITFPKLLEKVNEIKGIERIRFVTSHPKDLSD 278
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
L + M + + EH+ H+PVQSGS +L AMNR YT D+ +V
Sbjct: 279 ELIVAMRDLEKVCEHI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLV 322
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM- 395
+ L +P + I TDII GFPGETDEDF T+++ ++ +F + + R GTPA +M
Sbjct: 323 EKLKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMP 382
Query: 396 KKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWI 432
+VP + +R ++L + E A M G+ I I
Sbjct: 383 NQVPDDIKHQRFQQLVKLIEEIALKKNRQMLGKTYEILI 421
>gi|345848843|ref|ZP_08801861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
zinciresistens K42]
gi|345639713|gb|EGX61202.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
zinciresistens K42]
Length = 495
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 196/395 (49%), Gaps = 22/395 (5%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
G +T ++T+GC N DSE ++G L GY A + +AD+ + NTC V+ + + +
Sbjct: 2 GVKTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGANGDADVVVFNTCAVRENADNKL 61
Query: 115 DTLIA-----KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
+ K + + V GC+ Q RD ++ V +V G I ++ ++E
Sbjct: 62 YGNLGHLAPMKTRRPGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLLERAR 121
Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 122 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTG 181
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGM 282
++ V ++A+GV E+ L ++ AYG DIG LL A A DG +R
Sbjct: 182 DILAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFGKLLRACGA---IDGLERVRFTS 238
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + + IA + P V LH+P+QSGSD VL AM R Y + +++ +
Sbjct: 239 PHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAA 296
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
+P I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P
Sbjct: 297 IPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMEDQIPKQ 356
Query: 402 VVKKRSRELTSVFE--AFTPYLGMEGRVERIWITE 434
VV+ R L ++ E ++ G GR + + E
Sbjct: 357 VVQARYERLVALQEEISWEENRGQVGRTLELMVAE 391
>gi|420212653|ref|ZP_14718001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM001]
gi|394279614|gb|EJE23920.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM001]
Length = 514
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|27467889|ref|NP_764526.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis ATCC 12228]
gi|57866805|ref|YP_188442.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis RP62A]
gi|251810724|ref|ZP_04825197.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876275|ref|ZP_06285142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis SK135]
gi|293366743|ref|ZP_06613419.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646301|ref|ZP_12296162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU144]
gi|417658991|ref|ZP_12308604.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU045]
gi|417909904|ref|ZP_12553637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU037]
gi|417910848|ref|ZP_12554564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU105]
gi|417913346|ref|ZP_12557013.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU109]
gi|418605439|ref|ZP_13168764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU041]
gi|418607743|ref|ZP_13170966.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU057]
gi|418609881|ref|ZP_13173015.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU065]
gi|418612172|ref|ZP_13175218.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU117]
gi|418616672|ref|ZP_13179596.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU120]
gi|418622040|ref|ZP_13184796.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU123]
gi|418624502|ref|ZP_13187177.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU125]
gi|418626753|ref|ZP_13189349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU126]
gi|418628490|ref|ZP_13191035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU127]
gi|418664683|ref|ZP_13226149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU081]
gi|419768123|ref|ZP_14294260.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770912|ref|ZP_14296974.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-K]
gi|420163370|ref|ZP_14670117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM095]
gi|420165173|ref|ZP_14671877.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM088]
gi|420167650|ref|ZP_14674302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM087]
gi|420172708|ref|ZP_14679206.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM067]
gi|420182962|ref|ZP_14689095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM049]
gi|420193970|ref|ZP_14699799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM021]
gi|420197182|ref|ZP_14702906.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM020]
gi|420201994|ref|ZP_14707589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM018]
gi|420214227|ref|ZP_14719506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05005]
gi|420216059|ref|ZP_14721281.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05001]
gi|420218841|ref|ZP_14723891.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04008]
gi|420221916|ref|ZP_14726841.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH08001]
gi|420224778|ref|ZP_14729616.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH06004]
gi|420227083|ref|ZP_14731856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05003]
gi|420229406|ref|ZP_14734112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04003]
gi|420231764|ref|ZP_14736409.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051668]
gi|420234452|ref|ZP_14739015.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051475]
gi|421607205|ref|ZP_16048451.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis AU12-03]
gi|81674874|sp|Q5HPP8.1|MIAB_STAEQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81843816|sp|Q8CSS3.1|MIAB_STAES RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|27315434|gb|AAO04568.1|AE016747_65 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637463|gb|AAW54251.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
RP62A]
gi|251805884|gb|EES58541.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295300|gb|EFA87827.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis SK135]
gi|291319044|gb|EFE59414.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329728030|gb|EGG64474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU144]
gi|329736630|gb|EGG72896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU045]
gi|341652513|gb|EGS76301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU037]
gi|341655036|gb|EGS78772.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU105]
gi|341655628|gb|EGS79352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU109]
gi|374402536|gb|EHQ73561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU041]
gi|374403860|gb|EHQ74855.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU057]
gi|374406217|gb|EHQ77120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU065]
gi|374410129|gb|EHQ80890.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU081]
gi|374820054|gb|EHR84168.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU117]
gi|374820750|gb|EHR84826.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU120]
gi|374827415|gb|EHR91277.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU123]
gi|374827731|gb|EHR91592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU125]
gi|374831297|gb|EHR95039.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU126]
gi|374837336|gb|EHS00902.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU127]
gi|383361044|gb|EID38427.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-250]
gi|383362461|gb|EID39813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-K]
gi|394235059|gb|EJD80633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM095]
gi|394236340|gb|EJD81874.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM088]
gi|394237678|gb|EJD83164.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM087]
gi|394241385|gb|EJD86799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM067]
gi|394249425|gb|EJD94638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM049]
gi|394265989|gb|EJE10635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM020]
gi|394266668|gb|EJE11293.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM021]
gi|394269967|gb|EJE14490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM018]
gi|394283592|gb|EJE27757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05005]
gi|394289947|gb|EJE33817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH08001]
gi|394291586|gb|EJE35384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04008]
gi|394292509|gb|EJE36251.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05001]
gi|394294181|gb|EJE37867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH06004]
gi|394297584|gb|EJE41181.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05003]
gi|394299172|gb|EJE42723.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04003]
gi|394302306|gb|EJE45754.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051668]
gi|394304255|gb|EJE47662.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051475]
gi|406656997|gb|EKC83390.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis AU12-03]
Length = 514
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|418325516|ref|ZP_12936722.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU071]
gi|365228118|gb|EHM69303.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU071]
Length = 514
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|418411712|ref|ZP_12984978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus epidermidis BVS058A4]
gi|410891295|gb|EKS39092.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus epidermidis BVS058A4]
Length = 514
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|187778464|ref|ZP_02994937.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC
15579]
gi|187772089|gb|EDU35891.1| tRNA methylthiotransferase YqeV [Clostridium sporogenes ATCC 15579]
Length = 432
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 218/437 (49%), Gaps = 37/437 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEVVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIVG--------VQQIDRVVEVVEETLKGHEVRL 173
++K + V GC Q ++ ++EGV +V V I+R +E + ++ +V
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVAKIEGVDVVLGTRNKGDIVYWINRAMEEKNQVIEVKDV-- 124
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L K+ L++ + R +K L I GC C+YC ARG + S E ++ VR +
Sbjct: 125 LRNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKVMEEVRKL 183
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G KE+ LS D +YG D+ NL +L I +G +RIG +P F E
Sbjct: 184 SKHGFKEIILSGIDIASYGFDLEGKYNLTSILEDID---KVEGIERIRIGSIDPTFFTEE 240
Query: 292 LKEIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I
Sbjct: 241 -----EIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVYNLRTNIEAVSI 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
TDII GFPGET+E+FN+T +K+ K ++H+ +F PR T A +M+ +V + ++RS
Sbjct: 296 TTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATRAEKMENQVDGNIKEERS 355
Query: 408 RELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLG----YVQVLVPSTGNMLGTS 459
++ ++ +A M +E+ ++ E GI G Y+++ S ++ G
Sbjct: 356 NKIINLDKALEKEF-MNKFIEKEMLVLYEQETKEKGIFEGYTPNYIKIYAKSLKDITGEI 414
Query: 460 ALVKITSVGRWSVFGEV 476
K+ V + + GE+
Sbjct: 415 ISTKLKEVSKDFIKGEI 431
>gi|337749973|ref|YP_004644135.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
KNP414]
gi|386725602|ref|YP_006191928.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
K02]
gi|336301162|gb|AEI44265.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus mucilaginosus
KNP414]
gi|384092727|gb|AFH64163.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
K02]
Length = 442
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 231/450 (51%), Gaps = 40/450 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
TE + + T GC N DSE M+G + GY+L EEA I ++NTC + + + +++T
Sbjct: 2 TEKVKVVTLGCEKNLVDSEIMSGLVHERGYSLVSEKEEATIIIVNTCGFIDAAKEESVNT 61
Query: 117 LI--AKCKSAK--KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
++ A+ K K L+V+GC+ Q ++ LKE+ + IVG + ++++E L+G
Sbjct: 62 ILDMAELKQTANLKALIVSGCLTQRYKEELLKEMPEIDGIVGTGDFHNINQIIDEALQGS 121
Query: 170 EVRLL------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ + + +KLP ++ ++ + I GC ACT+C RG S ++
Sbjct: 122 KPVYVGNPVFNYEQKLPR----RLTTPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSM 177
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
ES++ V+ + A GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R+
Sbjct: 178 ESVLEEVQQLAAQGVKEISLIAQDSTNYGTDLYDGFKLPELMNR-VSEVP--GIEWVRLH 234
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
P F + L ++ + +P + ++ +P+Q SD++L M R D R ++ + E
Sbjct: 235 YAYPGFFTDELIDV--IADNPKICKYIDMPLQHSSDSILKRMRRPGRQRDARELIKKIRE 292
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPS 400
+PG+ + T +I GFPGET+EDF + I++ +F ++ + + TPA+R+ +VP
Sbjct: 293 RIPGVSLRTSLIVGFPGETEEDFENLKSFIQDVQFDRLGVFTYSKEEDTPASRLPDQVPD 352
Query: 401 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAA-DG---IHLGYVQVLVPSTGN-- 454
V + R+ L + + G GR+ ++ I DG +++G Q P
Sbjct: 353 EVKEYRANVLMEIQREISSSRG-SGRIGQVIDVLIEKYDGRNDVYVGRSQFDAPEIDGEV 411
Query: 455 -------MLGTSALVKITSVGRWSVFGEVI 477
+G+ A V+IT + GEV+
Sbjct: 412 FVGGRELAIGSIAKVRITHSFEFDFSGEVV 441
>gi|312622276|ref|YP_004023889.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202743|gb|ADQ46070.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
kronotskyensis 2002]
Length = 471
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 213/449 (47%), Gaps = 49/449 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I
Sbjct: 39 HIVTYGCQMNVHDSEKLAGILNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPL 98
Query: 122 K--SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGH 169
K KKP + V GC+PQ ++L + I G + + + +++ T K
Sbjct: 99 KRLKEKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKT 158
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + + + +P RR + I GC C+YC + RG S E ++
Sbjct: 159 VIDVSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRQPEEIIYE 218
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNL--PILLNAI-----------VAELPPDGST 276
+ + +G+KEV L ++ +YG+D+G N+ P LL + V P D S
Sbjct: 219 IEQLAQNGIKEVTLLGQNVNSYGKDLGNNITFPKLLEKVNEIKGIERIRFVTSHPKDLSD 278
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
L + M + + EH+ H+PVQSGS +L AMNR YT D+ +V
Sbjct: 279 ELIVAMRDLEKVCEHI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLV 322
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM- 395
+ L +P + I TDII GFPGETDEDF T+++ ++ +F + + R GTPA +M
Sbjct: 323 EKLKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMP 382
Query: 396 KKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLGYVQ----VL 448
+VP + +R + L + E A M GR I I + + +G + V
Sbjct: 383 NQVPDNIKHQRFQRLVKLVEEIALKKNRQMLGRTYEILIDGRSKRNNLLVGRTRTNKVVN 442
Query: 449 VPSTGNMLGTSALVKITSVGRWSVFGEVI 477
V + + VKI ++GEVI
Sbjct: 443 VKCSEEFMFKFVNVKILEAAEHWLYGEVI 471
>gi|433654962|ref|YP_007298670.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293151|gb|AGB18973.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 471
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 218/448 (48%), Gaps = 44/448 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++T+GC N DSE +AG L+ GY TDN E+AD+ L NTC V+ ++ + +++
Sbjct: 35 FHIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVSQ 94
Query: 121 CKSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE 170
K K KP L + GC+ Q ++ ++ + IV G + + E+++E+L
Sbjct: 95 LKELKQRKPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQESLNSDT 154
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + K D+P R + I GC CTYC + RG S ++
Sbjct: 155 TIIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREKSREPHDILN 214
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMT 283
++++ +G KE+ L ++ +YG D+ +L ++N I DG +R +
Sbjct: 215 EIKSLANEGFKEITLLGQNVNSYGNDLPTKIDFADLLYMINDI------DGIERIRFMTS 268
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P I + L L C + LH+PVQSGS+ +L MNR+Y+ + +++ L + +
Sbjct: 269 HPKDISDKLIFAMRDLDKLCEH--LHLPVQSGSNKILERMNRKYSRERYLEIINKLRDNI 326
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 402
PG+ I TDII GFPGETD+DF T++L+KE ++ + + R GTPA +M +V +
Sbjct: 327 PGIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKGTPAEKMSNQVDEDI 386
Query: 403 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLGYVQVLVPSTGN------ 454
KR EL ++ + M+G+V E+ +G + L T
Sbjct: 387 KHKRLEELINLQNIISIEKNNEMKGKV-----VEVLVEGTSKRDSEKLTGRTRTNKIVHF 441
Query: 455 -----MLGTSALVKITSVGRWSVFGEVI 477
++G VKI W++ GE+I
Sbjct: 442 KAKPELIGKFVNVKIIDTKAWTMQGELI 469
>gi|56421035|ref|YP_148353.1| hypothetical protein GK2500 [Geobacillus kaustophilus HTA426]
gi|261418482|ref|YP_003252164.1| MiaB family RNA modification protein [Geobacillus sp. Y412MC61]
gi|319767557|ref|YP_004133058.1| MiaB family RNA modification protein [Geobacillus sp. Y412MC52]
gi|56380877|dbj|BAD76785.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261374939|gb|ACX77682.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61]
gi|317112423|gb|ADU94915.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52]
Length = 449
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 131/459 (28%), Positives = 223/459 (48%), Gaps = 35/459 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYIEQFQRERQPINAV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
R ++A G KE+ L+ TG YG D+ N LL + ++P G LRI I
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLKRLRISSIEASQIT 239
Query: 290 EH----LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ LK +++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P
Sbjct: 240 DEVIDVLKRSEKIVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPE 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + +D+I GFPGET+++F +T N I+E +F ++H+ + R GTPAARM ++
Sbjct: 294 LAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKH 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNML 456
R R L ++ + EG+V + E + G Y++V P+T M+
Sbjct: 354 DRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMV 413
Query: 457 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
G VKIT G GE +++ V D++A + + SS
Sbjct: 414 GELVKVKITKAGYPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|335429548|ref|ZP_08556446.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haloplasma
contractile SSD-17B]
gi|334889558|gb|EGM27843.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Haloplasma
contractile SSD-17B]
Length = 482
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 136/445 (30%), Positives = 213/445 (47%), Gaps = 24/445 (5%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KI + + TFGC N D+E M+G L G+ T N EEADI ++NTC ++ +++
Sbjct: 39 KIGKGKKFLIDTFGCQMNVHDTEVMSGILQNMGFNHTKNEEEADIIILNTCAIRENAENK 98
Query: 114 MDTLIAKCKSAKKP-----LVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVVEVVE 163
+ I K K+ L V GC+ Q + L++ + V ++ G I R+ E +
Sbjct: 99 VFGKIGALKHLKRENPDLILGVCGCMSQEEKIVNTLLEKYQHVDLIFGTHNIHRLPEYLR 158
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ E V + ++ +PK R + I GC CTYC RG S
Sbjct: 159 DAYLNKERIVEVWSQEGDIVEHMPKRREGSVKAWVNITYGCDEFCTYCIVPFTRGKERSR 218
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ VR + G KEV L ++ +YG+D + ++ +L +R
Sbjct: 219 LPKDIINEVRELAELGYKEVTLLGQNVNSYGKDFK-DEKYGFGDLLNDLNKVDIPRVRFT 277
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P + K +A + + + +H+PVQSG+ VL MNR+YT D+ +V L E
Sbjct: 278 TSHPKDFDD--KSVAALGKGGNLVEHIHLPVQSGNTDVLKRMNRKYTREDYLELVRKLKE 335
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS 400
+P + + TDII GFP ETDE F T++L+KE + + PR GTPAA+MK VP
Sbjct: 336 TIPNVSLTTDIIVGFPNETDEQFEDTLSLVKEVGYEGAFTFIYSPREGTPAAKMKDNVPM 395
Query: 401 AVVKKRSRELTS-VFEAFTP-YLGMEGRVERIWI--TEIAADGIHLGYVQV--LVPSTGN 454
V K+R + L V E + + +G+V + T D I GY + LV TG+
Sbjct: 396 EVKKERLQRLNKLVNEGYRKGHEQYKGQVVEVLCEGTSKNDDSILAGYTRTNKLVNFTGD 455
Query: 455 M--LGTSALVKITSVGRWSVFGEVI 477
+G VK+T W + GE +
Sbjct: 456 TAAIGNLVKVKVTEARTWHLLGEQV 480
>gi|444352574|ref|YP_007388718.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
gi|443903404|emb|CCG31178.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
Length = 474
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 25/367 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LT+ +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCK--SAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KKP V V GCV +G + V I+ G Q + R+ E+++
Sbjct: 62 QLGRWKLLKEKKPGVIIGVGGCVASQEGKLIRQRAHYVDIIFGPQTLHRLPEMIDAVRNN 121
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H+ V + ++ D LP+ R + I GC CTYC + RG S + +
Sbjct: 122 HKPVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ + + A GV+EV L ++ A Y G N LL + A DG +R
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTG-NFADLLRLVAA---IDGIDRIRFT 237
Query: 282 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P +E +I EV R P + SFLH+PVQ+GSD VL+ M R +T+ +++ ++ L
Sbjct: 238 TSHP---IEFTDDIIEVYRDTPELVSFLHLPVQAGSDRVLNLMGRTHTVLEYKAIIRKLR 294
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 399
E P +QI++D I GFPGET EDF +T+ LI E F + F RPGTPAA M VP
Sbjct: 295 EARPDIQISSDFIVGFPGETTEDFEKTMKLIAEVNFDVSYSFIFSARPGTPAADMVDDVP 354
Query: 400 SAVVKKR 406
A K+R
Sbjct: 355 EADKKQR 361
>gi|402833448|ref|ZP_10882065.1| MiaB-like protein [Selenomonas sp. CM52]
gi|402280487|gb|EJU29194.1| MiaB-like protein [Selenomonas sp. CM52]
Length = 428
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 212/429 (49%), Gaps = 30/429 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ T GC NQ ++E M G GYA+ E AD+++INTC+V S + LI + +
Sbjct: 6 LTTLGCKVNQFETETMEGVFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQLIRRAR 65
Query: 123 SAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RL 173
+ V+A GC Q +++ +EGV +V G ++ +V+ VE + V +
Sbjct: 66 RLNERAVIAVTGCYAQVAPEEIRAIEGVRVVLGTKERAAIVDHVERAAREAGVFDGTGDI 125
Query: 174 LHRKK---LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+H + +P P R L I GC C++C +ARG + S ++S+
Sbjct: 126 MHASEFEDIPLFGAPARTRA----FLKIEEGCENFCSFCIIPYARGPVRSRLLKSVRREA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++A G KE+ L+ G YGRD+G L +A+ A L G LR+G I
Sbjct: 182 AKLLAMGFKEIVLTGIHLGCYGRDLGD--VTLADAVRAVLSLPGLKRLRLGSLES--IEL 237
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+A + + LH+P+Q+GSD VL AMNR Y + F +++ + VPG+ I+T
Sbjct: 238 SDDLLALLAQEERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERVERAVPGVAIST 297
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 409
DII GFPGET E F +++ ++ F ++H+ + PR GTPAA +VP A K R
Sbjct: 298 DIIVGFPGETQELFEESLAFVERMNFARMHVFPYSPRRGTPAAAFAAQVPEAEKKARVHR 357
Query: 410 LTSVF----EAF-TPYLGMEGRVERIWITEIAADGIHLGYVQVLVPS---TGNMLGTSAL 461
+ ++ EAF +LG E V E DG+ Y++V + TG++ L
Sbjct: 358 MQALAAKKSEAFHAAFLGTEMPVLFETEREGVTDGLTANYIRVYTDAPVRTGDIHAMR-L 416
Query: 462 VKITSVGRW 470
V++ G W
Sbjct: 417 VRLYRDGVW 425
>gi|404482175|ref|ZP_11017402.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales bacterium
OBRC5-5]
gi|404344336|gb|EJZ70693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales bacterium
OBRC5-5]
Length = 475
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 187/364 (51%), Gaps = 26/364 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G L+ GY +N E+AD+ L NTCTV+ + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGHLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS--------IVGVQQIDRVVEVVEE--TLKGH 169
K+ + + GC+ Q +++E+E + + G I ++ E++ E T K
Sbjct: 101 KEKNPDMIIGICGCMMQ---EVEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQ 157
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V ++ ++ LP R F + I GC C+YC + RG S E ++
Sbjct: 158 VVNVMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDE 217
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
++ ++ADGVKE+ L ++ +YGR + ++ LL+ I DG LR +P
Sbjct: 218 IKGLVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKD 274
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + + E+ + + C + LH+P+QSGS +L MNR YT + +V + +P +
Sbjct: 275 LSDEVIEVMKKNKKICKH--LHLPLQSGSSDILKKMNRVYTKEGYLDLVRRIKAAIPDIS 332
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII GFPGET+ DF T++++KE ++ + R GTPAA+M+ ++ V+K R
Sbjct: 333 LTTDIIVGFPGETERDFLDTLDVVKEVRYDSAFTFIYSKRSGTPAAKMEDQIDPKVIKDR 392
Query: 407 SREL 410
L
Sbjct: 393 FDRL 396
>gi|242373585|ref|ZP_04819159.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
M23864:W1]
gi|242348948|gb|EES40550.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
M23864:W1]
Length = 514
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATSDINQADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I + E++EE K
Sbjct: 129 NLKHLKKERPECLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + +H+PVQSG++AVL M R+YT + +V + +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVSRIKNAIPDIA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|194476570|ref|YP_002048749.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
gi|171191577|gb|ACB42539.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
Length = 470
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 195/393 (49%), Gaps = 25/393 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++ TFGC N++DSE MAG L + GY + + EAD+ L NTCT++ ++ + + +
Sbjct: 27 TYWITTFGCQMNKADSERMAGILESIGYQIAPSEHEADLVLYNTCTIRDSAEQKVYSYLG 86
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ L+VAGCV Q G+ L+ + + +V G QQ +R+ ++ + G +V
Sbjct: 87 RQAQRKRTNPHIILIVAGCVAQQEGASLLRRVPEIDLVMGPQQTNRLSYLLSQVENGQQV 146
Query: 172 RLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + D+ RR V + + GC CTYC RG S ES+ +
Sbjct: 147 -IATEESYILEDITNARRESSVCGWVNVVYGCNERCTYCVVPSVRGKEQSRLPESIKMEM 205
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTMLRIGM 282
+ G +EV L ++ AYGRD+ G+ N L V E+ G +R
Sbjct: 206 EILATQGFREVTLLGQNVDAYGRDLAGISPEGRRHNTLTALLYFVHEV--KGINRIRFAT 263
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
++P + E L E L C + H+P QSG D VL M R Y + + +VD +
Sbjct: 264 SHPRYFTERLIEACSNLSKVCEH--FHIPCQSGDDEVLKTMARGYNVDRYYRIVDRIRSR 321
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401
+P I+ DII FPGETD + +T+ L+++ F QV+ + + PRP TPA+ +V
Sbjct: 322 MPDASISADIIVAFPGETDTQYQRTLELVEKVGFDQVNTAAYSPRPNTPASNWSIQVDER 381
Query: 402 VVKKRSRELTSVFE--AFTPYLGMEGRVERIWI 432
+ +R ++L S+ E AF R+E I I
Sbjct: 382 IKVERLQQLNSLVEKKAFERSKRYLNRIEEILI 414
>gi|392971900|ref|ZP_10337292.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus equorum
subsp. equorum Mu2]
gi|403046776|ref|ZP_10902245.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
sp. OJ82]
gi|392509613|emb|CCI60582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus equorum
subsp. equorum Mu2]
gi|402763472|gb|EJX17565.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
sp. OJ82]
Length = 513
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 16/366 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ ++S + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTATEDINHADVILINTCAIRENAESKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
K K+ + V GC+ Q ++ LK + V I+ G I R+ E++EE
Sbjct: 127 GNLKHLKREKPETVIGVCGCMSQEESVVNKILKSYQNVDIIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR+ + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G +E+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IAEVRDLARQGYQEITLLGQNVNAYGKDIE-GLEYGLGDLLEDITQIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTKIPNV 363
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
+ TDII G+P ET+ F +T+ L E +F + + R GTPAA+MK VP V K
Sbjct: 364 ALTTDIIVGYPNETEAQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMKDNVPLEVKKD 423
Query: 406 RSRELT 411
R ++L
Sbjct: 424 RLQQLN 429
>gi|297529334|ref|YP_003670609.1| MiaB family RNA modification protein [Geobacillus sp. C56-T3]
gi|297252586|gb|ADI26032.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3]
Length = 449
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 131/459 (28%), Positives = 223/459 (48%), Gaps = 35/459 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY + AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYIEQFQRERQPINAV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
R ++A G KE+ L+ TG YG D+ N LL + ++P G LRI I
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLRRLRISSIEASQIT 239
Query: 290 EH----LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ LK +++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P
Sbjct: 240 DEVIDVLKRSEKIVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPE 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 404
+ + +D+I GFPGET+++F +T N I+E +F ++H+ + R GTPAARM ++
Sbjct: 294 LAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKH 353
Query: 405 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD------GIHLGYVQVLVPSTGNML 456
R R L ++ + EG+V + E + G Y++V P+T M+
Sbjct: 354 DRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMV 413
Query: 457 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 495
G VKIT G GE +++ V D++A + + SS
Sbjct: 414 GELVKVKITKAGYPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|41408944|ref|NP_961780.1| hypothetical protein MAP2846c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|81413559|sp|Q73W15.1|MIAB_MYCPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|41397303|gb|AAS05163.1| hypothetical protein MAP_2846c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 517
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 198/396 (50%), Gaps = 27/396 (6%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLIN 102
H T +++ + G T ++T+GC N DSE +AG L A GY + +E AD+ + N
Sbjct: 14 HGPVTSTVARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFN 73
Query: 103 TCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQ 154
TC V+ + + + ++ K+ + V GC+ Q R+ L+ V +V G
Sbjct: 74 TCAVRENADNKLYGNLSHLAPRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHN 133
Query: 155 IDRVVEVVEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
I + ++E K +V + + LP R + + + I+VGC +CT+C
Sbjct: 134 IGSLPTLLERARHNKAAQVEIAEALQQFPSSLPSARESAYAAWVSISVGCNNSCTFCIVP 193
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG---------RDIGVNLPILL 263
RG + + ++ VR+++ADGV EV L ++ AYG RD G LL
Sbjct: 194 SLRGKEVDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGA-FARLL 252
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
A E+ DG +R +P + + I + + P V LH+P+QSGSD VL AM
Sbjct: 253 RA-CGEI--DGLERVRFTSPHPAEFTDDV--IEAMAQTPNVCPALHMPLQSGSDRVLRAM 307
Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
R Y F ++D + +P I TD+I GFPGET+EDF T+++++ +F Q
Sbjct: 308 RRSYRAERFLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQ 367
Query: 384 FYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 418
+ RPGTPAA + ++P AVV++R L + E+ +
Sbjct: 368 YSKRPGTPAAELDGQIPKAVVQERYERLVELQESIS 403
>gi|78044693|ref|YP_359280.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996808|gb|ABB15707.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
Z-2901]
Length = 434
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 213/436 (48%), Gaps = 34/436 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E + G GY + D S+ ADI++INTCTV S +I K
Sbjct: 8 TLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKSRQMIRKAVQK 67
Query: 125 KKPLVVA--GCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
VVA GC Q + + LK E ++G +R+VE+VE+ L+ R K+
Sbjct: 68 NPRAVVAAVGCYAQVAPEEILKIPEVNLVLGTVHKNRLVELVEKVLR-------ERTKIN 120
Query: 181 AL----------DLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
A+ ++P K+ K + I GC C YC +ARG L S +E +V
Sbjct: 121 AVASFEELLEFEEMPLKLAPGKARAFVKIQEGCNSYCAYCIIPYARGPLRSRPLEDVVAE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FI 288
V+ + G E+ L+ TGAYG++ +LP L + + LR+ P F
Sbjct: 181 VKKLCQSGFSEIVLTGIHTGAYGQE-KQDLPKLADLVAELFKIPELKRLRLSSIEPQDFT 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+E L +A P LH+P+QSG D +L AM R+YT ++ +++T+ E +P + +
Sbjct: 240 VELLDVLAN---SPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRERIPDIAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 407
+D+I GFPGET+E F T NL+K+ F +H+ ++ PR GTPAA+M ++P ++RS
Sbjct: 297 TSDVIVGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAGTPAAKMPGQIPEREKERRS 356
Query: 408 -RELTSVFEAFTPYLG-MEGRVERIWITEIAADGIHLG----YVQVLVPSTGNMLGTSAL 461
L E F Y G++ + E +G G Y++V G
Sbjct: 357 LLLLNLKEELFKNYASKFLGKILEVIPEEQDTEGFWEGHSDNYLRVKFSGNNIKRGEIYP 416
Query: 462 VKITSVGRWSVFGEVI 477
VKIT + V GE++
Sbjct: 417 VKITEMKEGYVSGELV 432
>gi|398781992|ref|ZP_10545860.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
auratus AGR0001]
gi|396997054|gb|EJJ08029.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
auratus AGR0001]
Length = 495
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 190/368 (51%), Gaps = 15/368 (4%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++T+GC N DSE ++G L GY + E AD+ + NTC V+ + + + + +
Sbjct: 9 IRTYGCQMNVHDSERLSGLLEEAGYVPAPKDGEGADVVVFNTCAVRENADNRLYGNLGQL 68
Query: 122 --KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 69 APKKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARIQEEAQV 128
Query: 174 LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ L A LP R + + + I+VGC CT+C RG ++ V
Sbjct: 129 EIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVE 188
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++A+GV E+ L ++ AYG DIG + + A +G +R +P +
Sbjct: 189 ALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGTIEGLERVRFTSPHPRDFTDD 247
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ IA + P V LH+P+QSGSD VL AM R Y F +++ + +P I+TD
Sbjct: 248 V--IAAMAETPNVMPQLHMPLQSGSDRVLKAMRRSYRQERFLGILEKVRAAMPDAAISTD 305
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 410
II GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M+ ++P AVV++R L
Sbjct: 306 IIVGFPGETEEDFAQTLHTVRESRFAQAFTFQYSKRPGTPAADMEGQIPKAVVQERYERL 365
Query: 411 TSVFEAFT 418
++ E +
Sbjct: 366 VALQEEIS 373
>gi|418634076|ref|ZP_13196474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU129]
gi|420189484|ref|ZP_14695458.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM037]
gi|420204215|ref|ZP_14709775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM015]
gi|374838068|gb|EHS01625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU129]
gi|394262034|gb|EJE06819.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM037]
gi|394274229|gb|EJE18654.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM015]
Length = 514
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T+ L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|312793678|ref|YP_004026601.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180818|gb|ADQ40988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 471
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 197/388 (50%), Gaps = 22/388 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I
Sbjct: 39 HIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPL 98
Query: 122 K--SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGH 169
K KKP + V GC+PQ ++L + I G + + + +++ T K
Sbjct: 99 KRLKDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKT 158
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + + + +P RR + I GC C+YC + RG S E ++
Sbjct: 159 VIDVSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYE 218
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ + +GVKEV L ++ +YG+D+G + P LL V E+ +G +R ++P
Sbjct: 219 IEQLAQNGVKEVTLLGQNVNSYGKDLGNGITFPKLLEK-VNEI--EGIERIRFVTSHPKD 275
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + L L C +H+PVQSGS +L AMNR YT D+ +V+ L +P +
Sbjct: 276 LSDELIVAMRDLEKVC--EHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIA 333
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
I TDII GFPGETDEDF T+++ ++ +F + + R GTPA +M +VP + +R
Sbjct: 334 ITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQVPDDIKHQR 393
Query: 407 SRELTSVFE--AFTPYLGMEGRVERIWI 432
+ L + E A M G+ I I
Sbjct: 394 FQRLVKLVEEIALKKNRQMLGKTYEILI 421
>gi|242242576|ref|ZP_04797021.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
W23144]
gi|418329422|ref|ZP_12940490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418615521|ref|ZP_13178463.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU118]
gi|418630421|ref|ZP_13192903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU128]
gi|420174938|ref|ZP_14681384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM061]
gi|420191659|ref|ZP_14697570.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM023]
gi|242234003|gb|EES36315.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
W23144]
gi|365230457|gb|EHM71552.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374816960|gb|EHR81151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU118]
gi|374837962|gb|EHS01520.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU128]
gi|394244471|gb|EJD89813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM061]
gi|394265810|gb|EJE10457.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM023]
Length = 514
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T+ L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|172037723|ref|YP_001804224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
ATCC 51142]
gi|354553405|ref|ZP_08972711.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
gi|229890507|sp|B1WU96.1|MIAB_CYAA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|171699177|gb|ACB52158.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. ATCC 51142]
gi|353554122|gb|EHC23512.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
Length = 448
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 216/456 (47%), Gaps = 58/456 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 11 HITTFGCQMNKADSERMAGILEDMGFKWSEDPNTADLILYNTCTIRDNAEQKVYSYLGRQ 70
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 71 AKRKHEHPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLQDLLTQVFDGNQVVA 130
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC + RG S T E++ +
Sbjct: 131 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYAEMEL 189
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ G KEV L ++ AYGRD+ G + L + + G LR ++P
Sbjct: 190 LGKQGYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYQVHDISGIERLRFATSHPR 249
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ E L + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 250 YFTERLIKACHEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHEKYRHIIDKIREYMPDA 307
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA------------- 393
I+ D I GFPGET+ F T+ L+ + F Q++ + + PRPGTPAA
Sbjct: 308 SISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTPAAIWDNQLSEEIKSD 367
Query: 394 RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLGYVQVLVPST 452
R++++ V +K ++ YL R+E + + E D QV+ +
Sbjct: 368 RLQRLNHLVAQKAAQRSQR-------YL---NRIEEVLVEDENPKDN-----TQVMGRTR 412
Query: 453 GNML-----------GTSALVKITSVGRWSVFGEVI 477
GN L G VKIT V +S+ GE I
Sbjct: 413 GNRLTFFEGDIEALKGQLIKVKITEVRAFSLTGEAI 448
>gi|255994803|ref|ZP_05427938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
49989]
gi|255993516|gb|EEU03605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
49989]
Length = 484
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 210/415 (50%), Gaps = 50/415 (12%)
Query: 62 YMK----TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
YMK T GC NQ ++ +A + S+ GY +T +++ DI +IN+C+V S ++ +
Sbjct: 42 YMKVGFLTLGCKVNQYETRAVAEKFSSRGYEVTSGTKDVDIAIINSCSVTSMAEKKVRQA 101
Query: 118 IAKCKSAKKPLVVA--GCVPQ--GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I K + V+A GC PQ G LK L I+G + +VE VE+ LK V
Sbjct: 102 IRKMRRENPDSVIAVMGCYPQRDGGAALKSLGCNVIIGNESKLGIVEKVEKFLKEQSV-- 159
Query: 174 LHRKKLPALDLPKVRRNKFVE--------------ILPINVGCLGACTYCKTKHARGHLG 219
+D+ + R K E + I GC CTYC H RG +
Sbjct: 160 -------IIDVTDINRCKTFENIQATCDIDGRKRAYIKIQDGCDRYCTYCIIAHVRGQVR 212
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNLPILLNAIVAELPPDGS 275
S V+ + + ++ DG +E+ L+ +T YG D IG ++ ++N I + +P G
Sbjct: 213 SKKVDDIYEEAKKLVEDGYREIVLTGINTALYGEDLHQGIGKSMVDVINKI-STIP--GD 269
Query: 276 TMLRIGMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSD 331
+RIG P + + +K + ++ RH H+ VQSGS+ VL+AM R YT +
Sbjct: 270 FRIRIGSLEPTVVNKEYINLIKNLPKLCRHA------HLSVQSGSNDVLAAMGRNYTREE 323
Query: 332 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391
+ +VD L + I+TDII GFPGE+++DF Q++ L+++ F +VHI ++ R GTP
Sbjct: 324 YIDIVDMLRDAHGNYGISTDIIVGFPGESEKDFEQSLMLVEKIPFTKVHIFRYSERAGTP 383
Query: 392 AARMKKVPSAVVK-KRSRELTSVF-EAFTPYLGMEGRVERIWITEIAADGIHLGY 444
AA K + +K +R +EL+++ ++ + + R I E+ +G + GY
Sbjct: 384 AAGFKNMIKEEIKTRRMKELSTIAKDSMRRFHELNMGDRRGVIFEMKEEGAYTGY 438
>gi|187477340|ref|YP_785364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
avium 197N]
gi|123765978|sp|Q2KWE0.1|MIAB_BORA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|115421926|emb|CAJ48446.1| putative nucleic acid binding protein [Bordetella avium 197N]
Length = 475
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/400 (32%), Positives = 205/400 (51%), Gaps = 33/400 (8%)
Query: 40 LHDNHLSKTGSLSPKIP-------GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTD 91
+H+ L + G+ +P P G+ IY++TFGC N+ DS+ M L G +TD
Sbjct: 1 MHETTLKREGASTPSNPTPSTHAAGSGKIYIRTFGCQMNEYDSDKMVDVLREDQGLEMTD 60
Query: 92 NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVP--QGSRDLKEL 144
N EEAD+ L NTC+V+ +Q + + + + + KK + V GCV +G+ +K
Sbjct: 61 NPEEADVILFNTCSVREKAQEKVFSDLGRVQHLKKLNPNLVIGVGGCVASQEGAAIVKRA 120
Query: 145 EGVSIV-GVQQIDRVVEVV----EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPIN 199
V +V G Q + R+ E++ +E + ++ +K ++P R + I
Sbjct: 121 PYVDVVFGPQTLHRLPELIRRRRDEGVSQVDISFPEIEKFD--NMPPSRVEGATAFVSIM 178
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD 254
GC C++C + RG S E ++ V + GV+EV L ++ AY G D
Sbjct: 179 EGCSKYCSFCVVPYTRGEEVSRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRIEGSD 238
Query: 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314
+ +LL V E+P G +R ++P + + + E R P + SFLH+PVQ+
Sbjct: 239 EIADFAMLLE-YVHEIP--GIERIRYTTSHPKEMTQRMVEA--YARLPKLVSFLHLPVQA 293
Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
GSD VL+AM R YT +F++VV L P + +++D I GFPGET+EDF +T+ LI +
Sbjct: 294 GSDRVLAAMKRGYTALEFKSVVRKLRAARPNLTLSSDFIVGFPGETEEDFQKTMKLIADV 353
Query: 375 KFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 413
F + RPGTPAA ++ P V KR ++L ++
Sbjct: 354 GFDTSFSFVYSRRPGTPAADLQDDTPQDVKLKRLQQLQAL 393
>gi|148241703|ref|YP_001226860.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. RCC307]
gi|229891031|sp|A5GRJ8.1|MIAB_SYNR3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|147850013|emb|CAK27507.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
Length = 453
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 213/444 (47%), Gaps = 37/444 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++ TFGC N++DSE MAG L + GY ++AD+ L NTCT++ ++ + + +
Sbjct: 8 TYWITTFGCQMNKADSERMAGILESMGYCAGSGEDQADLVLYNTCTIRDNAEQKVYSYLG 67
Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 68 RQARRKRDNPALTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLSQVEAGQQV 127
Query: 172 RLLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ RR+ + + GC CTYC RG S +++ +
Sbjct: 128 VATDDHHILE-DITTARRDSSLCAWVNVIYGCNERCTYCVVPSVRGQEQSRLPQAIRLEM 186
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ A G KE+ L ++ AYGRD+ G L + + G +R ++
Sbjct: 187 EGLAASGYKEITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHVHDVKGIERIRFATSH 246
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E L E L P V HVP QSG D +L AM R YT + +R +V+ + +L+P
Sbjct: 247 PRYFTERLIEACAEL--PKVCEHFHVPFQSGDDELLKAMARGYTTARYRRIVEQIRKLMP 304
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 403
I+ D I GFPGETD F +T+ L+ E F ++ + + PRP TPAA +V V
Sbjct: 305 DAAISADAIVGFPGETDAQFRRTLELVDEIGFDLLNTAAYSPRPNTPAADWPDQVEEHVK 364
Query: 404 KKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIH-------LGYVQ----VLVP 450
+R +EL ++ E GRVE E+ A+GI+ +G + P
Sbjct: 365 VERLKELNALVERKAKACSQRYLGRVE-----EVLAEGINPKDNTQLMGRTRTNRLTFFP 419
Query: 451 STGNMLGTSALVKITSVGRWSVFG 474
+ + +G + V+I V +S+ G
Sbjct: 420 AGSHRVGDTVPVRIEQVRAFSLSG 443
>gi|296454331|ref|YP_003661474.1| MiaB family RNA modification protein [Bifidobacterium longum subsp.
longum JDM301]
gi|296183762|gb|ADH00644.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
longum JDM301]
Length = 479
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 194/397 (48%), Gaps = 27/397 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLINTCTVKSPSQS 112
G ++ T GC N DSE +AG L A GY N + D+ ++NTC V+ +
Sbjct: 22 GKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPATEGQINDNDLDLLVLNTCAVRENAAE 81
Query: 113 AMDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
M I + K +P + V GC+ Q R K++ + + G + I+ + +++
Sbjct: 82 RMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLL 139
Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
++ + ++ ++L LP R ++ + I+VGC CT+C RG
Sbjct: 140 DQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKD 199
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTML 278
++ +R +ADG KEV L ++ ++G IG LL A DG +
Sbjct: 200 RRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERV 256
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R +P + + IA + P + LH P+QSGSD +L AM R Y + F ++
Sbjct: 257 RFTSPHPAAFTDDV--IAAMAETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGR 314
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 398
+ E +P QI+TDII GFPGET+EDF QT++++++ +F + PRPGTPAA M+++
Sbjct: 315 IREAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQI 374
Query: 399 PSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 433
P VV+ R L ++ E T EGR + IT
Sbjct: 375 PRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMIT 411
>gi|365838228|ref|ZP_09379579.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hafnia alvei ATCC 51873]
gi|364560408|gb|EHM38348.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hafnia alvei ATCC 51873]
Length = 474
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 232/461 (50%), Gaps = 43/461 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G+ LTDN+EEAD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLGSTHGFELTDNAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKK--PLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K K+ P V V GCV +G + V IV G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEANPNVIIGVGGCVASQEGKLLRQRAHYVDIVFGPQTLHRLPEMINK-VRG 120
Query: 169 H-----EVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+V +K L P+ + FV I+ GC CTYC + RG S
Sbjct: 121 SKSPVVDVSFPEIEKFDRLPEPRAEGPSAFVSIME---GCNKYCTYCVVPYTRGEEVSRP 177
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ + + A GV+EV L ++ AY G ++ + DG +R
Sbjct: 178 ADDVLFEIAQLAAQGVREVNLLGQNVNAYRGPSFDGDICTFAELLRLVAAIDGIDRIRFT 237
Query: 282 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P +E +I V P + SFLH+PVQSGSD +L+ M R +T+ ++++++ L
Sbjct: 238 TSHP---IEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTVLEYKSIIRKLR 294
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 399
+ P + I++D I GFPGET EDF QT+ LI E F + F PRPGTPAA M VP
Sbjct: 295 KARPDILISSDFIIGFPGETQEDFEQTMKLIAEVNFDVSYSFVFSPRPGTPAADMADDVP 354
Query: 400 SAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGN--- 454
K+R L +A + M G V+RI + +GI V + T N
Sbjct: 355 EEEKKQRLYILQDRINQQAQSYSRKMVGTVQRILV-----EGISRKNVMEMSGRTENNRV 409
Query: 455 --------MLGTSALVKITSVGRWSVFGEVIKILNQVDDKI 487
++GT V+IT V S+ G +++ +Q+D ++
Sbjct: 410 VNFEGSPELVGTFVDVEITEVRTNSLRGVLVRTEDQMDLRV 450
>gi|416124308|ref|ZP_11595304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis FRI909]
gi|420176865|ref|ZP_14683259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM057]
gi|420179459|ref|ZP_14685750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM053]
gi|319401418|gb|EFV89628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis FRI909]
gi|394251772|gb|EJD96848.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM057]
gi|394253663|gb|EJD98659.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM053]
Length = 517
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 16/365 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++ VL M R+YT + +V + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
+ TDII G+P ET+E F +T+ L + +F + + R GTPAA+MK VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLEVKKER 425
Query: 407 SRELT 411
+ L
Sbjct: 426 LQRLN 430
>gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens
BL2]
Length = 498
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 189/366 (51%), Gaps = 22/366 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+KT+GC N DSE ++G L GY D ++AD+ + NTC V+ + + + + +
Sbjct: 20 VKTYGCQMNVHDSERLSGLLDDAGYVPADTDDQADVIVFNTCAVRENADNRLYGNLGQLA 79
Query: 123 SAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VR 172
K+ + V GC+ Q RD +K+ V +V G + + ++E E V
Sbjct: 80 HVKERNPDFQIAVGGCMAQKDRDTIVKKAPWVDVVFGTHNMGSLPALLERARHNQEAQVE 139
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+L + LP R ++ + I+VGC +CT+C RG ++ V
Sbjct: 140 ILESLDVFPSTLPSRRESQHSGWVSISVGCNNSCTFCIVPSLRGKEKDRRPGDILAEVEA 199
Query: 233 VIADGVKEVWLSSEDTGAYG---RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FI 288
++ADGV EV L ++ +YG RD G LL A+ +G +R +P F
Sbjct: 200 LVADGVVEVTLLGQNVNSYGSEFRDKGA-FAKLLRAVGKV---EGIERVRFTSPHPASFS 255
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ + +AE P V LH+P+QSGSD++L +M R Y S F ++D++ E +P I
Sbjct: 256 DDVIDAMAET---PAVMPQLHMPLQSGSDSILKSMRRSYRTSRFMRILDSVREKIPNAAI 312
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII GFPGET+EDF T+++++ +F Q Q+ RPGTPAA M +VP +V++R
Sbjct: 313 TTDIIVGFPGETEEDFLGTMDIVRRARFSQAFTFQYSIRPGTPAATMDDQVPKHIVQERF 372
Query: 408 RELTSV 413
LT++
Sbjct: 373 ERLTAL 378
>gi|119510198|ref|ZP_01629336.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
gi|119465148|gb|EAW46047.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
Length = 454
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 224/462 (48%), Gaps = 44/462 (9%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
I ++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ +
Sbjct: 2 ITSNRHYHIITFGCQMNKADSERMAGILEDMGFEWSEDPNDADLILYNTCTIRDNAEHKV 61
Query: 115 DTLIAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
+ + + K+ L+VAGCV Q G L+ + + +V G Q +R+ +++ L
Sbjct: 62 YSYLGRQAKRKQEEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLTSVL 121
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVES 225
G++V + D+ + RR+ V + I GC CTYC + RG S T E+
Sbjct: 122 NGNQVVATESVHIME-DITQPRRDSSVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTM 277
+ + + G KE+ L ++ AYGRD+ P L V ++P G
Sbjct: 181 IRAEMEELGRQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHNFTDLLYYVHDIP--GIER 238
Query: 278 LRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
LR ++P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++
Sbjct: 239 LRFATSHPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRII 295
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396
DT+ +P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPGTPAA
Sbjct: 296 DTIRRYMPDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWS 355
Query: 397 KVPSAVVK----KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPST 452
S VK +R L +V + M GR+E + + + + QV+ +
Sbjct: 356 NQLSEEVKSDRLQRLNHLVNVKASERSQRYM-GRIEDVLVEDQNSKDP----TQVMGRTG 410
Query: 453 GNML-----------GTSALVKITSVGRWSVFGEVIKILNQV 483
GN L G VKIT V +S+ GE +++ V
Sbjct: 411 GNRLTFFTGDISQLKGQIVKVKITEVRAFSLTGEPVEVRQAV 452
>gi|297544628|ref|YP_003676930.1| MiaB family RNA modification protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842403|gb|ADH60919.1| RNA modification enzyme, MiaB family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 471
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 223/462 (48%), Gaps = 43/462 (9%)
Query: 50 SLSPKIPGTETIY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
++ K G + Y ++T+GC N DSE +AG L GY T+N E+AD+ L NTC V+
Sbjct: 21 EIAEKNKGKDLYYHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVRE 80
Query: 109 PSQSAMDTLIAKCKS--AKKP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRV 158
++ + +++ K A+ P + V+GC+ Q ++ ++ + IV G I +
Sbjct: 81 HAEIRVLGRVSQMKELKARNPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKF 140
Query: 159 VEVVEETLKGHEV--RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
+++ E L ++ ++ K +LP R + + I GC CTYC + RG
Sbjct: 141 PQLLWEALNSQDIVIDVIEDTKNVIEELPVKRDSNLKAWVNIIYGCNNFCTYCIVPYTRG 200
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-----LNAIVAELP 271
S E +V V+ + G KE+ L ++ +YG+D+ N+ LN I
Sbjct: 201 REKSRKPEDIVAEVKELAQKGYKEITLLGQNVNSYGKDLDENITFAKLLYKLNEI----- 255
Query: 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSD 331
+G +R ++P I + L L C LH+PVQ+GS+ +L MNR+YT
Sbjct: 256 -EGIERIRFMTSHPKDISDELIYAMRDLNKVC--EHLHLPVQAGSNKILKKMNRKYTKEH 312
Query: 332 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391
+ ++D + +P + I TDII GFPGET+EDF +T++L++ +F + + R GT
Sbjct: 313 YLEIIDKVRSNIPDIAITTDIIVGFPGETEEDFLETLDLVQRVRFDAAYTFIYSKRAGTV 372
Query: 392 AARM-KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVE-RIWITEIAADGIHLGYVQVLV 449
AA M +V AV +R L + +E E R I E+ +GI L
Sbjct: 373 AANMPDQVDDAVKHERLERLIE----LQNKISLEKSAELRGKIVEVLIEGISKRDSNKLT 428
Query: 450 PST-----------GNMLGTSALVKITSVGRWSVFGEVIKIL 480
T +++G A +KIT W++ GE+++++
Sbjct: 429 SRTRTNKVVHFVGDESLIGKLANIKITETKAWTMQGELVEVI 470
>gi|410668430|ref|YP_006920801.1| methylthiotransferase YqeV [Thermacetogenium phaeum DSM 12270]
gi|409106177|gb|AFV12302.1| methylthiotransferase YqeV [Thermacetogenium phaeum DSM 12270]
Length = 461
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 218/457 (47%), Gaps = 53/457 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ ++ + G+ + D ++AD+++INTC V + +I +
Sbjct: 18 VAFYTLGCKVNQQETASLMKLFRKRGFRVVDFKKDADVYIINTCAVTHTAAQKCRQVIRR 77
Query: 121 C--KSAKKPLVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR---- 172
+S + V GC Q + ++ + GV +VG R+VE+V E ++
Sbjct: 78 AIGRSPAAVVAVLGCYSQVAAEEVLSIPGVDLVVGTSGRSRLVELVSEAMEKKRSGEWPA 137
Query: 173 -----------LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
L ++LP D P+ R L I GC CTYC +ARG + S
Sbjct: 138 KGINAVEALDGSLDFEQLPLPDDPRRTRA----FLKIEDGCDQFCTYCTVPYARGGVRSL 193
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLR 279
+ + R+ ++ G +EV L+ T AYG+D+G VNLP LL +V ELP G+ +R
Sbjct: 194 HPDLVQERLSELVCAGYREVVLTGVHTSAYGKDLGGGVNLPRLLRELV-ELP--GNFRIR 250
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+ P + E L E+ P + LH+P+QSG D +L MNR YT ++R +
Sbjct: 251 LSSVEPAEVTEELLELLAT--SPRLCRHLHIPLQSGDDEILCRMNRPYTAEEYRKLFHLA 308
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM---- 395
E++PG+ I TD++ GFPGE + F T NLI F +H+ ++ PRPGTPAA M
Sbjct: 309 REMIPGIAITTDVLVGFPGEEERHFQNTFNLIATLPFRDLHVFKYSPRPGTPAAAMPEQV 368
Query: 396 ----KKVPSAVVKKRSRELTSVF------EAFTPYLGMEGRVERIWITEIAADGIHLGYV 445
K S+ +++ + EL + F E T + R + W +G+ Y+
Sbjct: 369 APPVKDRRSSCLRRLADELAASFARRFVGETMTVLVERRSRKRQGWW-----EGLTDNYL 423
Query: 446 QVLVPST---GNMLGTSALVKITSVG-RWSVFGEVIK 478
+V P++ + G V+I VG R + GE ++
Sbjct: 424 RVFFPASQRKSGVRGEFVPVRILEVGPRDELQGEAVE 460
>gi|408500855|ref|YP_006864774.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium
asteroides PRL2011]
gi|408465679|gb|AFU71208.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium
asteroides PRL2011]
Length = 485
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 194/384 (50%), Gaps = 26/384 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLINTCTVKSPSQSAMDTL 117
Y++T GC N+ DSE +AG L A GY + E D+ ++NTC V+ + M
Sbjct: 34 YVRTLGCQMNEHDSERIAGVLRAQGYRQATPEQVRAREVDVMVLNTCAVRDNATQRMYGT 93
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169
I + K KP + V GC+ Q R+ +K V ++ G + I + ++++ K
Sbjct: 94 IGRWHRFKQHKPDTRIAVGGCMAQKDRERIVKAAPWVDAVFGTRDIGSLPGLLDKARKDG 153
Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ ++L L LP VR ++ + I+VGC CT+C RG +++ ++
Sbjct: 154 RPQVGVSQELRDLPGRLPAVRASRSQAWVSISVGCNNTCTFCIVPSVRGRERDRSMDDIL 213
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 285
V + G ++V L ++ +YG G LL A +P G +R +P
Sbjct: 214 QEVEDCVRSGARQVTLLGQNVNSYGWSTGDRYAFARLLRA-CGRVP--GLERIRFTSPHP 270
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + IA + P V LH+P+QSGSD +L AM R Y F ++D + +P
Sbjct: 271 AAFTDDV--IAAMAETPTVMHQLHMPLQSGSDRILRAMRRSYRSQRFLQILDKVRAAMPD 328
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 405
I TDII GFPGET+EDF T+++++ +F I ++ PRPGTPAARM ++P AVV+
Sbjct: 329 ALITTDIIVGFPGETEEDFQATMDVVRRARFSSAFIFEYSPRPGTPAARMPQLPKAVVQD 388
Query: 406 RSRELTSVFEAFT-----PYLGME 424
R L ++ E+ T +LG E
Sbjct: 389 RFERLQALQESITMEHMQAFLGKE 412
>gi|389879388|ref|YP_006372953.1| RNA modification protein [Tistrella mobilis KA081020-065]
gi|388530172|gb|AFK55369.1| RNA modification protein [Tistrella mobilis KA081020-065]
Length = 467
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 220/459 (47%), Gaps = 59/459 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+ +Y+KT+GC N DSE M+ L+A G+A T+ +E+AD+ ++NTC ++ + + +
Sbjct: 2 TKKLYIKTYGCQMNVYDSERMSDVLAAQGFAPTEVAEDADLVILNTCHIREKAAEKVYSD 61
Query: 118 IAKCKSAKKP----LVVAGCVPQGSRDLKELEGVSI----------VGVQQIDRVVEVVE 163
+ + ++A P + V GCV Q EGV I G Q R+ ++VE
Sbjct: 62 LGRLRAAGGPAGRLIAVGGCVAQA-------EGVEIRTRAPFVDIVFGPQTYHRLADMVE 114
Query: 164 ETLKGHEVRLLHRKKLPALD-LPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSY 221
+G V D LP + + + GC CT+C + RG S
Sbjct: 115 RATRGQAVVETDFPTEAKFDHLPTATGQRGHTAFVAVQEGCDKFCTFCVVPYTRGAEYSR 174
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAY--GRDIGVNLPI------LLNAIVAELPPD 273
+++ +R + A+GV+EV L ++ AY G P L +AE+ D
Sbjct: 175 PAGAILDEIRALAANGVREVMLLGQNVNAYHGAAPEGARGPAGDWTLARLARAIAEI--D 232
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH---PCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
G +R ++P + L +L H P + +LH+PVQSGSD +L AMNR++T
Sbjct: 233 GIARIRYTTSHPRDMGGDL-----ILAHRDLPQLMPYLHLPVQSGSDRILKAMNRKHTAE 287
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390
D+ +VD L E+ P M ++ D I GFPGE+D DF T+ L++ + + ++ PRPGT
Sbjct: 288 DYLRIVDRLREVRPDMAMSGDFIVGFPGESDADFEATMRLVERVDYALAYSFKYSPRPGT 347
Query: 391 PAARMK-KVPSAVVKKRSRELTSVF----EAFTPYLGMEGRVERIWITEIAADGIHLG-- 443
PAA ++ +VP V +R + L + AF M GR + + G H G
Sbjct: 348 PAADLEDQVPDEVKSERLQRLQDLLSSQQRAFN--ASMTGRRLPVLLER---PGRHAGQM 402
Query: 444 -----YVQ-VLVPSTGNMLGTSALVKITSVGRWSVFGEV 476
Y+Q V+V + G V I +V +S+ G +
Sbjct: 403 VGRSPYMQAVVVDAPAEAAGRMVEVDIDTVNSFSLNGRI 441
>gi|317498496|ref|ZP_07956790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
5_1_63FAA]
gi|291559009|emb|CBL37809.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [butyrate-producing
bacterium SSC/2]
gi|316894189|gb|EFV16377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
5_1_63FAA]
Length = 470
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 219/440 (49%), Gaps = 27/440 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++ TFGC N+ DSE + G L GY + +EEAD + NTCTV+ + + + +
Sbjct: 34 TCHVTTFGCQMNEKDSEKLLGILETIGYEEVE-TEEADFLIFNTCTVRENANTKLYGHLG 92
Query: 120 KCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETL--K 167
+ K K+ + + GC+ Q ++++ I G I ++ E+++ + K
Sbjct: 93 QVKKMKERNPQMMIGLCGCMMQEEHVIEKIRSSYKFVDIIFGTHNIFKLAELLKARVDSK 152
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
G V + DLP R+ F + I GC C+YC + RG S E ++
Sbjct: 153 GMIVDIWKDTDQIVEDLPSDRKFSFKCGVNIMYGCNNFCSYCIVPYVRGRERSRKPEDII 212
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
V+ V+++GVKEV L ++ +YG+ + P+ ++ E+ +G +R +P
Sbjct: 213 KEVKQVVSEGVKEVMLLGQNVNSYGKTL--EEPMSFAELLREVEKVEGLERIRFMTPHPK 270
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + L E+ + C + +H+P+QSGS +L MNR YT + + + E +PG+
Sbjct: 271 DLSDDLIEVMATSKKVCKH--MHLPMQSGSSRLLKLMNRHYTKEQYVALAKKIQERIPGV 328
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
TDII GFPGET+EDF +T+++++E F + + R GTPAA M+ +V V+K
Sbjct: 329 SFTTDIIVGFPGETEEDFKETLDVVREVGFDSAYTYVYSKRSGTPAASMEDQVDKDVIKD 388
Query: 406 RSRELTSVFEAFTPYLGME--GRVERIWITE--IAADGIHLGYVQ--VLVPSTG--NMLG 457
R L ++ + + + G +ER+ I E +G+ G ++ +LV G +G
Sbjct: 389 RFDRLLALLKETSAKNCKKKVGDIERVLIEEENTHEEGMLTGRLENNLLVHFKGCKEQIG 448
Query: 458 TSALVKITSVGRWSVFGEVI 477
T A VK+ + GE I
Sbjct: 449 TMADVKLVEEKGFYYMGEQI 468
>gi|158337776|ref|YP_001518952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
marina MBIC11017]
gi|229890405|sp|B0C0E2.1|MIAB_ACAM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|158308017|gb|ABW29634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina
MBIC11017]
Length = 454
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 189/350 (54%), Gaps = 24/350 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--- 118
++ T+GC N++DSE MAG L GY ++N ++A++ L NTCT++ ++ + + +
Sbjct: 9 HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
AK K A+ LVVAGCV Q D L+ + + +V G Q +R+ +++E+ G +V L
Sbjct: 69 AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L I P V H+P QSG + VL AM+R YT +R ++D + ++
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYRRIIDNIRAIM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393
P I+ D I GFPGET+E F T+ L+++ +F ++ + + PRPGTPAA
Sbjct: 303 PDASISADAIVGFPGETEEQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAA 352
>gi|291543948|emb|CBL17057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus
champanellensis 18P13]
Length = 455
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 136/445 (30%), Positives = 223/445 (50%), Gaps = 43/445 (9%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+++FGC N +D E + L + GY LT+ E+AD+ L+NTC V+ ++ + + + K
Sbjct: 23 VQSFGCQLNMTDGEKLKWLLLSMGYGLTEEPEQADLILLNTCAVREHAEDRVFGHLGQLK 82
Query: 123 --SAKKPLVV---AGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG--HE 170
KKP ++ GC+ ++L+ +VG ++R+ ++ E L G H
Sbjct: 83 PYKQKKPGLIIGLCGCMTAEEPVREKLKASYPYVNLVVGTGALERLPAMLLEILGGKKHS 142
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + P+ +L +VR F +PI GC CTYC + RG S + + +V
Sbjct: 143 VDAT-VQSAPSEELSQVRSCSFKASVPIMYGCNNFCTYCIVPYVRGRERSRDPKIIERQV 201
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R +++ G KE++L ++ +YG+D+ G+ P LL + A +G +R ++P
Sbjct: 202 RELVSQGCKEIFLLGQNVNSYGKDLPDGIRFPELLRRLDA---IEGEYWIRFMSSHPKDA 258
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L ++ RH V LH+PVQSGSD++L AMNR YT+ + V VP +
Sbjct: 259 TPELIDVICNSRH--VEKHLHLPVQSGSDSILHAMNRCYTVKKYLETVRYARSRVPDFAL 316
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 407
TDII GFP ETDE+F+ T+ L+++ F V+ + PR GT AA++ P+ V R
Sbjct: 317 TTDIIVGFPNETDEEFSATLGLLEQVGFDNVYSFIYSPRSGTKAAQIADHTPAQVKTVRM 376
Query: 408 REL--------TSVFEAF---TPYLGMEG--RVERIWITEIAADGIHLGYVQVLVPSTGN 454
++L T ++ F T + EG R W+T + +G V+V + G+
Sbjct: 377 QQLLAQQRETSTRLYRRFLGRTMQVLFEGVSRKGEPWLTGKSTEG-------VIVEAKGD 429
Query: 455 --MLGTSALVKITSVGRWSVFGEVI 477
+GT A V I W+V G ++
Sbjct: 430 PSRIGTFADVHIEETKNWAVLGTIL 454
>gi|126652507|ref|ZP_01724672.1| YmcB [Bacillus sp. B14905]
gi|126590635|gb|EAZ84751.1| YmcB [Bacillus sp. B14905]
Length = 514
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/442 (28%), Positives = 217/442 (49%), Gaps = 24/442 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---- 115
T Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 69 TFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELG 128
Query: 116 -TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
L K K+ + + V GC+ Q ++ L+ V +V G I R+ +++E
Sbjct: 129 FLLKYKRKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAYMSK 188
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 189 EMVVEVWSKEGDVIENLPKKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + A G +E+ L ++ AYG+D ++ L ++ L +R ++P
Sbjct: 249 AEVRELAAAGYQEIMLLGQNVNAYGKDFE-DIEYRLGDLMDALRKIDIPRIRFTTSHPRD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ L E+ + + + +H+PVQSGS+ +L M R+YT F T+V+ + +P +
Sbjct: 308 FDDQLIEV--LAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIKAAIPEVT 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 406
+ TDII G+P ET+E F +T++L +E F + PR GTPAA+M VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVPEEVKKER 425
Query: 407 SRELTSVFEAFT--PYLGMEGRVERIWI--TEIAADGIHLGYVQ----VLVPSTGNMLGT 458
+ L V ++ + G V + + T D + GY + V + ++G
Sbjct: 426 LQRLNEVVGEYSRKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKAPAEVIGQ 485
Query: 459 SALVKITSVGRWSVFGEVIKIL 480
VKI +S+ GE ++++
Sbjct: 486 LVKVKIIETTSYSLTGEFLEVV 507
>gi|379795659|ref|YP_005325657.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MSHR1132]
gi|356872649|emb|CCE58988.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MSHR1132]
Length = 514
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 218/447 (48%), Gaps = 32/447 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATSDINVADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR+ + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRQGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+D+ +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDMQYDLGDLLEAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P +H+ ++ + + +H+PVQSG++AVL M R+YT + +V + E +P
Sbjct: 305 PWDFTDHMIDV--IAEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIKERIP 362
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 403
+ + TDII G+P E++E F +T+ L E KF + + R GTPAA+MK VP V
Sbjct: 363 NVALTTDIIVGYPNESEEQFEETLTLYDEVKFEHAYTYLYSQRDGTPAAKMKDNVPLDVK 422
Query: 404 KKRSRELTSVFEAFTPYLGM---EGRVERIWI--TEIAADGIHLGYVQ----VLVPSTGN 454
K+R + L + ++ + M EG+ + + + + GY V +
Sbjct: 423 KERLQRLNKMVGHYSQ-MAMSKYEGQTVTVLCEGSSKKDEEVLAGYTDKNKLVNFKAPKE 481
Query: 455 MLGTSALVKITSVGRWSVFGEVIKILN 481
M+G V I ++S+ G IK +N
Sbjct: 482 MVGKLVEVHIDEAKQYSLNGSFIKEVN 508
>gi|392407827|ref|YP_006444435.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Anaerobaculum mobile DSM 13181]
gi|390620963|gb|AFM22110.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Anaerobaculum mobile DSM 13181]
Length = 450
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 219/440 (49%), Gaps = 34/440 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC- 121
M +GC NQ D + + L+ G+ TD S ADI ++ TC+++ ++ + + I +
Sbjct: 7 MDIYGCQMNQYDGDRLRTVLTQKGWLETDPSY-ADIVIMITCSIREKAEQKVLSEIGRYG 65
Query: 122 ---KSAKKP-LVVAGCVPQ--GSRDLKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLL 174
++ +P L V GC+ Q G L++ V ++VG + I R+ +V+E L V L
Sbjct: 66 RIYRTKGRPVLAVVGCMAQNMGLDLLRKFPQVKAVVGPRHIGRLPDVLEGVLNHKAVAYL 125
Query: 175 HRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+DL P VR N F + I GC CTYC + RG S ++ V
Sbjct: 126 DEDPREMVDLEVAPLVRSNPFKAFVTIAHGCDNFCTYCIVPYVRGRFVSRHPSEILKEVN 185
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ GV EV L ++ +YG+D G LL V+ +P G +R ++P
Sbjct: 186 ELVESGVIEVTLLGQNVDSYGKDFDNGYRFSNLLRD-VSRIP--GLLRVRFTTSHPKDFT 242
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + E+ + P + +++P+QSGS+ +L MNR YT+ + +V+ + E VP + I
Sbjct: 243 DDVIEV--MASEPKICPAINLPIQSGSNRILKKMNRGYTVEHYEEIVNHIREAVPEVAIT 300
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 408
+D+I GFPGE ++DF T+ ++K +F VH + + PR GTPAA M +VP +++ R
Sbjct: 301 SDLIVGFPGEAEDDFKDTLEMLKRMQFDLVHTAAYSPRNGTPAAVMPDQVPE---EEKKR 357
Query: 409 ELTSVFE-----AFTPYLGMEGRVERIWITEIAADGIHLGYVQ------VLVPSTGNMLG 457
L V E + L + G V + I A G + + VL+P +MLG
Sbjct: 358 RLAIVNELQDGISLQKNLSLIGNVVEVLIDGYAPKGKSMLQGRTPTDKVVLIPGDEDMLG 417
Query: 458 TSALVKITSVGRWSVFGEVI 477
V +T+ W ++GE+I
Sbjct: 418 KLCQVHVTNASHWYLYGEII 437
>gi|428769245|ref|YP_007161035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium aponinum
PCC 10605]
gi|428683524|gb|AFZ52991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium aponinum
PCC 10605]
Length = 451
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 213/446 (47%), Gaps = 36/446 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ TFGC N++DSE MAG L G+ T++ +A + + NTCT++ ++ + + + +
Sbjct: 10 ITTFGCQMNKADSERMAGILENMGFEFTEDPNQAKVLVYNTCTIRDNAEQKVYSYLGRQA 69
Query: 123 SAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
K LVVAGCV Q G + L+ + + +V G Q +R+ ++E+ G+++
Sbjct: 70 KRKHQEPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDSLLEQVFAGNQIVAT 129
Query: 175 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 130 EPIHIYE-DITKPRRESEVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIKAEIEEL 188
Query: 234 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 189 AKQGYKEITLLGQNIDAYGRDLPGVTETGRHKHTLTDLLYYIHDIEGIERIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L I P V H+P QSG + +L AM R YT +R ++ + E +P
Sbjct: 249 FTERL--IKACYELPKVCEHFHIPFQSGDNEILKAMKRGYTHERYRDIIAKIREYMPDAA 306
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRP TPAA + ++ R
Sbjct: 307 ISADAIVGFPGETEEQFQNTLKLVEDIGFDQLNTAAYSPRPNTPAAEWENQIDEQEKSDR 366
Query: 407 SRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLGYVQVLVPSTGNML-------- 456
+ L + +A L + R+E + + +I QV+ + GN L
Sbjct: 367 LQRLNHLVAIKAGERSLRYQDRIEEVLVEDINPKDT----TQVMGRTRGNRLTFFAGNLA 422
Query: 457 ---GTSALVKITSVGRWSVFGEVIKI 479
G VKIT V +S+ G + +
Sbjct: 423 ELKGKVVSVKITEVRAFSLTGNALSL 448
>gi|220932113|ref|YP_002509021.1| MiaB-like tRNA modifying protein [Halothermothrix orenii H 168]
gi|219993423|gb|ACL70026.1| MiaB-like tRNA modifying enzyme [Halothermothrix orenii H 168]
Length = 438
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 190/361 (52%), Gaps = 14/361 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E M G GY + D + AD+++IN+CTV + + L
Sbjct: 4 TVAFHTLGCKVNHYETEAMMGIFEEAGYKVVDFDDRADVYIINSCTVTNEAARKSRQLAR 63
Query: 120 KCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKG-HEVRLL 174
K + VVA GC Q S D +K+++ + +V G + +V++VEE G EV +
Sbjct: 64 KARRKNPEAVVALVGCYAQVSPDEVKKIDAIDLVLGSDRRKDIVKLVEEVRTGGKEVTDV 123
Query: 175 HR-KKLPA---LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
KKL L++ KV+ I I GC C+YC +ARG + S ES++ V
Sbjct: 124 KDFKKLTTYEDLNINKVKETTRAYI-KIEEGCNQFCSYCIIPYARGPVRSRKEESVIQEV 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ GVKE+ L+ GAYG D N L+ I + G +R+ + +
Sbjct: 183 ERLVRAGVKEIVLTGTHLGAYGLDEN-NDKALVELIQNLVKVKGLARIRLSSLEVTEVND 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L I C + LH+P+QSGS+ +L M R YT+ +F+ VD + +++ + I T
Sbjct: 242 DLIRIMGSEDKVCPH--LHLPLQSGSNTILKKMKRPYTVEEFKETVDKIRKIIEDIAITT 299
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 409
DII GFPGE ++FN++ N +KE F ++H+ F R GTPAARMK +VP V K+ S++
Sbjct: 300 DIIVGFPGEGQKEFNESYNTVKELGFSRLHVFPFSIRQGTPAARMKNQVPGDVKKEYSKK 359
Query: 410 L 410
+
Sbjct: 360 M 360
>gi|429761468|ref|ZP_19293893.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerostipes hadrus DSM
3319]
gi|429183721|gb|EKY24762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerostipes hadrus DSM
3319]
Length = 497
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 219/440 (49%), Gaps = 27/440 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++ TFGC N+ DSE + G L GY + +EEAD + NTCTV+ + + + +
Sbjct: 61 TCHVTTFGCQMNEKDSEKLLGILETIGYEEVE-TEEADFLIFNTCTVRENANTKLYGHLG 119
Query: 120 KCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETL--K 167
+ K K+ + + GC+ Q ++++ I G I ++ E+++ + K
Sbjct: 120 QVKKMKERNPQMMIGLCGCMMQEEHVIEKIRSSYKFVDIIFGTHNIFKLAELLKARVDSK 179
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
G V + DLP R+ F + I GC C+YC + RG S E ++
Sbjct: 180 GMIVDIWKDTDQIVEDLPSDRKFSFKCGVNIMYGCNNFCSYCIVPYVRGRERSRKPEDII 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
V+ V+++GVKEV L ++ +YG+ + P+ ++ E+ +G +R +P
Sbjct: 240 KEVKQVVSEGVKEVMLLGQNVNSYGKTL--EEPMSFAELLREVEKVEGLERIRFMTPHPK 297
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + L E+ + C + +H+P+QSGS +L MNR YT + + + E +PG+
Sbjct: 298 DLSDDLIEVMATSKKVCKH--MHLPMQSGSSRLLKLMNRHYTKEQYVALAKKIQERIPGV 355
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 405
TDII GFPGET+EDF +T+++++E F + + R GTPAA M+ +V V+K
Sbjct: 356 SFTTDIIVGFPGETEEDFKETLDVVREVGFDSAYTYVYSKRSGTPAASMEDQVDKDVIKD 415
Query: 406 RSRELTSVFEAFTPYLGME--GRVERIWITE--IAADGIHLGYVQ--VLVPSTG--NMLG 457
R L ++ + + + G +ER+ I E +G+ G ++ +LV G +G
Sbjct: 416 RFDRLLALLKETSAKNCKKKVGDIERVLIEEENTHEEGMLTGRLENNLLVHFKGCKEQIG 475
Query: 458 TSALVKITSVGRWSVFGEVI 477
T A VK+ + GE I
Sbjct: 476 TMADVKLVEEKGFYYMGEQI 495
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,184,411,328
Number of Sequences: 23463169
Number of extensions: 438618814
Number of successful extensions: 1132476
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8172
Number of HSP's successfully gapped in prelim test: 709
Number of HSP's that attempted gapping in prelim test: 1104368
Number of HSP's gapped (non-prelim): 9760
length of query: 624
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 475
effective length of database: 8,863,183,186
effective search space: 4210012013350
effective search space used: 4210012013350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)