Query 006956
Match_columns 624
No_of_seqs 523 out of 2515
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 16:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4355 Predicted Fe-S oxidore 100.0 8E-97 2E-101 755.6 43.0 476 1-484 1-482 (547)
2 COG0621 MiaB 2-methylthioadeni 100.0 9.8E-90 2.1E-94 740.9 45.2 415 58-477 2-436 (437)
3 PRK14340 (dimethylallyl)adenos 100.0 4.8E-79 1E-83 670.8 48.7 419 56-479 4-442 (445)
4 PRK14327 (dimethylallyl)adenos 100.0 1.6E-78 3.5E-83 672.6 49.6 417 55-478 63-504 (509)
5 PRK14332 (dimethylallyl)adenos 100.0 8.9E-78 1.9E-82 661.0 49.1 414 58-477 10-448 (449)
6 PRK14330 (dimethylallyl)adenos 100.0 4E-77 8.8E-82 655.1 49.6 416 59-480 1-433 (434)
7 PRK14335 (dimethylallyl)adenos 100.0 3.8E-77 8.2E-82 658.1 48.5 418 60-479 2-453 (455)
8 PRK14329 (dimethylallyl)adenos 100.0 7.9E-77 1.7E-81 657.2 49.9 420 53-478 18-466 (467)
9 PRK14331 (dimethylallyl)adenos 100.0 3.7E-76 8E-81 647.8 48.5 415 60-479 2-436 (437)
10 TIGR01578 MiaB-like-B MiaB-lik 100.0 5.8E-76 1.3E-80 643.1 48.6 413 60-477 1-420 (420)
11 PRK14333 (dimethylallyl)adenos 100.0 7.6E-76 1.6E-80 647.0 49.3 413 58-477 6-447 (448)
12 PRK14336 (dimethylallyl)adenos 100.0 1.6E-75 3.4E-80 638.8 48.3 399 58-481 1-417 (418)
13 PRK14326 (dimethylallyl)adenos 100.0 1.5E-75 3.3E-80 651.0 49.0 420 52-477 7-455 (502)
14 PRK14337 (dimethylallyl)adenos 100.0 2E-75 4.3E-80 643.1 49.1 413 59-477 4-445 (446)
15 PRK14325 (dimethylallyl)adenos 100.0 1.1E-74 2.4E-79 637.6 49.2 419 58-481 3-443 (444)
16 PRK14328 (dimethylallyl)adenos 100.0 3.3E-74 7.1E-79 632.8 48.3 415 59-478 2-439 (439)
17 TIGR01574 miaB-methiolase tRNA 100.0 3.4E-74 7.4E-79 632.5 48.1 413 60-477 1-438 (438)
18 PRK14338 (dimethylallyl)adenos 100.0 1.9E-73 4E-78 629.3 49.2 421 50-484 12-454 (459)
19 PRK14862 rimO ribosomal protei 100.0 3.2E-73 6.9E-78 624.4 46.3 412 54-477 3-440 (440)
20 TIGR00089 RNA modification enz 100.0 3.3E-73 7.1E-78 623.5 45.8 408 60-474 1-429 (429)
21 PRK14339 (dimethylallyl)adenos 100.0 7.7E-73 1.7E-77 618.0 46.9 400 70-477 1-419 (420)
22 TIGR01125 MiaB-like tRNA modif 100.0 9.8E-73 2.1E-77 619.8 46.9 408 60-474 1-430 (430)
23 PRK14334 (dimethylallyl)adenos 100.0 1.4E-71 3E-76 612.0 48.2 413 60-482 2-432 (440)
24 TIGR01579 MiaB-like-C MiaB-lik 100.0 8.3E-72 1.8E-76 609.8 43.0 395 63-464 1-414 (414)
25 KOG2492 CDK5 activator-binding 100.0 1.6E-57 3.6E-62 469.6 30.7 420 54-479 68-549 (552)
26 TIGR02026 BchE magnesium-proto 100.0 2.7E-35 5.9E-40 328.9 32.2 306 73-394 23-385 (497)
27 PRK00955 hypothetical protein; 100.0 3.9E-34 8.5E-39 320.0 30.3 200 192-396 292-528 (620)
28 TIGR03471 HpnJ hopanoid biosyn 100.0 4.8E-34 1E-38 317.3 28.9 280 94-394 67-385 (472)
29 PRK01254 hypothetical protein; 100.0 1.1E-32 2.5E-37 305.9 25.1 200 192-394 372-608 (707)
30 PRK05481 lipoyl synthase; Prov 100.0 5E-30 1.1E-34 267.6 23.7 213 190-419 51-264 (289)
31 COG1032 Fe-S oxidoreductase [E 99.9 7.2E-26 1.6E-30 250.5 28.9 302 95-406 72-415 (490)
32 COG1031 Uncharacterized Fe-S o 99.9 3.6E-24 7.7E-29 226.1 31.2 280 191-479 182-508 (560)
33 PRK07094 biotin synthase; Prov 99.9 1.4E-24 3.1E-29 230.1 24.2 196 192-403 39-236 (323)
34 PRK05904 coproporphyrinogen II 99.9 2.1E-24 4.6E-29 231.4 21.5 212 192-416 7-225 (353)
35 TIGR00510 lipA lipoate synthas 99.9 7.9E-24 1.7E-28 221.4 22.3 195 190-396 61-258 (302)
36 PF00919 UPF0004: Uncharacteri 99.9 4.8E-25 1E-29 193.9 10.3 92 60-151 1-98 (98)
37 PRK12928 lipoyl synthase; Prov 99.9 1.8E-23 4E-28 218.1 22.3 194 190-395 58-254 (290)
38 PRK08599 coproporphyrinogen II 99.9 1.8E-23 3.8E-28 226.4 21.7 193 192-395 2-200 (377)
39 PRK05628 coproporphyrinogen II 99.9 6.5E-23 1.4E-27 221.9 24.3 213 193-416 4-235 (375)
40 PRK09058 coproporphyrinogen II 99.9 1.7E-22 3.7E-27 223.3 22.7 194 191-395 61-263 (449)
41 PRK05799 coproporphyrinogen II 99.9 2.3E-22 4.9E-27 217.5 22.0 192 192-395 4-199 (374)
42 PRK08207 coproporphyrinogen II 99.9 4.7E-22 1E-26 221.0 23.2 215 191-415 163-393 (488)
43 PRK07379 coproporphyrinogen II 99.9 8.8E-22 1.9E-26 214.7 25.0 193 192-395 11-215 (400)
44 PRK08446 coproporphyrinogen II 99.9 2.1E-22 4.6E-27 216.0 19.5 189 195-396 4-199 (350)
45 TIGR01212 radical SAM protein, 99.9 4.4E-22 9.5E-27 209.3 21.4 190 195-395 21-226 (302)
46 PRK08898 coproporphyrinogen II 99.9 3.5E-21 7.6E-26 209.7 23.6 201 191-402 19-229 (394)
47 TIGR00539 hemN_rel putative ox 99.9 2.2E-21 4.8E-26 208.9 21.8 197 194-401 3-207 (360)
48 PRK08208 coproporphyrinogen II 99.9 2.9E-21 6.4E-26 212.5 22.8 212 191-413 39-259 (430)
49 PRK09057 coproporphyrinogen II 99.9 3.3E-21 7.1E-26 209.0 22.7 213 193-416 6-230 (380)
50 PRK06256 biotin synthase; Vali 99.9 6.3E-21 1.4E-25 203.4 21.8 192 199-406 65-260 (336)
51 PRK05660 HemN family oxidoredu 99.9 2.1E-20 4.5E-25 202.6 24.8 213 192-415 7-229 (378)
52 TIGR01210 conserved hypothetic 99.9 5.5E-21 1.2E-25 201.9 19.3 192 192-396 15-222 (313)
53 PRK06582 coproporphyrinogen II 99.9 1.9E-20 4.1E-25 203.4 23.6 214 191-415 11-236 (390)
54 PRK06294 coproporphyrinogen II 99.9 1.6E-20 3.6E-25 202.8 21.5 189 192-395 7-203 (370)
55 smart00729 Elp3 Elongator prot 99.9 2.2E-20 4.8E-25 182.3 18.7 194 193-396 2-201 (216)
56 TIGR00433 bioB biotin syntheta 99.9 1.2E-19 2.7E-24 189.7 24.6 198 193-406 29-231 (296)
57 PRK06245 cofG FO synthase subu 99.8 4.5E-20 9.8E-25 196.9 20.0 199 193-403 13-228 (336)
58 PRK08629 coproporphyrinogen II 99.8 6.1E-20 1.3E-24 201.9 21.5 189 191-393 52-245 (433)
59 PLN02428 lipoic acid synthase 99.8 1.7E-19 3.6E-24 191.3 23.6 208 192-416 102-312 (349)
60 TIGR00538 hemN oxygen-independ 99.8 3.6E-19 7.8E-24 197.4 24.6 213 192-415 50-276 (455)
61 PRK13347 coproporphyrinogen II 99.8 5E-19 1.1E-23 196.1 24.0 189 191-390 50-247 (453)
62 PRK09249 coproporphyrinogen II 99.8 4.6E-19 1E-23 196.4 22.8 187 193-390 51-246 (453)
63 TIGR00423 radical SAM domain p 99.8 1.1E-18 2.5E-23 184.1 19.1 197 194-402 7-221 (309)
64 COG0635 HemN Coproporphyrinoge 99.8 4.3E-18 9.3E-23 186.1 22.4 215 191-416 34-263 (416)
65 TIGR03550 F420_cofG 7,8-dideme 99.8 1.3E-18 2.8E-23 184.8 17.4 195 193-402 5-223 (322)
66 PRK06267 hypothetical protein; 99.8 8.1E-18 1.8E-22 180.5 22.0 188 193-402 28-222 (350)
67 TIGR01211 ELP3 histone acetylt 99.8 6.5E-18 1.4E-22 188.4 20.4 187 200-396 76-309 (522)
68 TIGR03551 F420_cofH 7,8-dideme 99.8 8.1E-18 1.7E-22 180.2 19.3 190 194-395 41-245 (343)
69 COG1242 Predicted Fe-S oxidore 99.8 2.6E-17 5.6E-22 165.7 20.0 192 195-396 27-232 (312)
70 cd01335 Radical_SAM Radical SA 99.8 2.3E-17 5E-22 158.7 18.6 190 196-400 1-195 (204)
71 PRK08445 hypothetical protein; 99.8 2.9E-17 6.3E-22 175.9 19.0 191 195-395 45-248 (348)
72 TIGR03700 mena_SCO4494 putativ 99.8 2.6E-17 5.6E-22 176.8 18.4 195 195-402 51-263 (351)
73 TIGR03699 mena_SCO4550 menaqui 99.8 2.7E-17 5.9E-22 175.9 18.5 196 195-402 44-254 (340)
74 PF04055 Radical_SAM: Radical 99.7 3.3E-17 7.2E-22 153.5 14.3 162 196-371 1-166 (166)
75 PRK08508 biotin synthase; Prov 99.7 2.2E-16 4.8E-21 164.5 20.9 187 198-401 13-204 (279)
76 PLN02389 biotin synthase 99.7 1.1E-15 2.3E-20 165.3 23.8 195 193-403 83-285 (379)
77 PRK09240 thiH thiamine biosynt 99.7 4.5E-15 9.7E-20 160.6 20.5 195 194-406 76-281 (371)
78 PRK15108 biotin synthase; Prov 99.6 1.7E-14 3.7E-19 154.5 22.3 193 194-403 44-243 (345)
79 COG1243 ELP3 Histone acetyltra 99.6 1.1E-14 2.4E-19 155.4 18.4 215 192-413 67-324 (515)
80 TIGR02351 thiH thiazole biosyn 99.6 3.3E-14 7.3E-19 153.6 19.2 198 194-409 75-283 (366)
81 PRK07360 FO synthase subunit 2 99.6 4.9E-14 1.1E-18 152.6 17.8 188 195-396 63-268 (371)
82 COG0502 BioB Biotin synthase a 99.6 1.4E-13 3.1E-18 144.6 19.8 193 193-402 51-249 (335)
83 PRK00164 moaA molybdenum cofac 99.6 4.2E-13 9.1E-18 143.0 23.8 192 193-402 18-214 (331)
84 PRK08444 hypothetical protein; 99.5 1.4E-13 3E-18 147.7 18.2 195 195-401 52-261 (353)
85 PRK05926 hypothetical protein; 99.5 4.5E-13 9.6E-18 144.7 20.7 187 195-394 71-272 (370)
86 PRK13361 molybdenum cofactor b 99.5 1.5E-12 3.2E-17 138.9 23.4 196 193-406 15-214 (329)
87 PRK09613 thiH thiamine biosynt 99.5 1.3E-12 2.7E-17 144.6 21.3 206 193-415 85-305 (469)
88 TIGR02666 moaA molybdenum cofa 99.5 4.1E-12 9E-17 135.6 23.4 192 193-402 11-209 (334)
89 PRK05927 hypothetical protein; 99.5 5.5E-13 1.2E-17 143.0 16.2 190 195-395 48-251 (350)
90 TIGR02668 moaA_archaeal probab 99.5 6.5E-12 1.4E-16 132.1 23.3 178 193-389 11-190 (302)
91 TIGR03822 AblA_like_2 lysine-2 99.4 9.1E-12 2E-16 132.4 22.0 190 189-402 85-282 (321)
92 PTZ00413 lipoate synthase; Pro 99.4 1.6E-11 3.6E-16 130.4 22.0 182 192-385 149-333 (398)
93 PLN02951 Molybderin biosynthes 99.4 2.7E-11 5.9E-16 131.2 23.7 196 193-406 59-258 (373)
94 PRK09234 fbiC FO synthase; Rev 99.4 8.7E-12 1.9E-16 146.5 20.2 187 195-393 529-730 (843)
95 PRK09234 fbiC FO synthase; Rev 99.3 3.7E-11 8E-16 141.3 19.5 195 194-403 73-293 (843)
96 PRK14463 ribosomal RNA large s 99.3 5.4E-10 1.2E-14 120.0 26.3 183 191-390 102-293 (349)
97 PRK14455 ribosomal RNA large s 99.3 6.4E-10 1.4E-14 119.8 23.7 188 191-392 108-307 (356)
98 TIGR02493 PFLA pyruvate format 99.3 3.2E-10 6.9E-15 114.9 20.1 174 194-387 17-200 (235)
99 PRK05301 pyrroloquinoline quin 99.3 1.6E-09 3.5E-14 117.6 25.4 178 190-386 14-193 (378)
100 PRK14466 ribosomal RNA large s 99.2 2E-09 4.3E-14 114.8 24.6 184 191-391 102-294 (345)
101 TIGR02109 PQQ_syn_pqqE coenzym 99.2 2.9E-09 6.2E-14 114.8 24.6 176 191-385 6-183 (358)
102 PRK14456 ribosomal RNA large s 99.2 2.6E-09 5.7E-14 115.3 23.4 186 191-392 120-323 (368)
103 TIGR01290 nifB nitrogenase cof 99.1 1.2E-08 2.6E-13 112.9 25.2 199 192-406 24-251 (442)
104 TIGR00238 KamA family protein. 99.1 2.9E-09 6.2E-14 113.8 19.4 188 190-402 111-305 (331)
105 COG2896 MoaA Molybdenum cofact 99.1 6.9E-09 1.5E-13 109.1 21.7 193 195-406 14-211 (322)
106 COG0320 LipA Lipoate synthase 99.1 4.3E-09 9.4E-14 106.6 19.2 181 191-385 69-251 (306)
107 PRK14457 ribosomal RNA large s 99.1 8.3E-09 1.8E-13 110.6 22.4 191 190-392 99-300 (345)
108 TIGR02495 NrdG2 anaerobic ribo 99.1 9.5E-09 2.1E-13 100.8 20.9 163 192-375 16-183 (191)
109 COG1060 ThiH Thiamine biosynth 99.1 2.3E-09 5E-14 115.6 17.9 194 194-396 61-268 (370)
110 PRK14470 ribosomal RNA large s 99.1 2.4E-08 5.2E-13 106.7 24.8 184 191-389 96-288 (336)
111 TIGR03470 HpnH hopanoid biosyn 99.1 1.5E-08 3.3E-13 107.7 22.7 198 191-412 27-227 (318)
112 PRK14467 ribosomal RNA large s 99.1 1.7E-08 3.6E-13 108.4 23.0 190 191-392 98-299 (348)
113 PRK14460 ribosomal RNA large s 99.1 4E-08 8.6E-13 105.8 25.3 185 191-392 101-302 (354)
114 PRK14453 chloramphenicol/florf 99.1 1.8E-08 3.9E-13 108.1 22.4 185 192-390 100-296 (347)
115 PRK14468 ribosomal RNA large s 99.1 4.8E-08 1E-12 104.8 25.1 184 191-390 92-289 (343)
116 PRK14459 ribosomal RNA large s 99.1 1.8E-08 4E-13 108.6 21.8 187 191-392 120-329 (373)
117 PRK11145 pflA pyruvate formate 99.1 1.2E-08 2.6E-13 104.3 19.5 178 193-391 21-209 (246)
118 PRK14461 ribosomal RNA large s 99.0 2.7E-08 5.8E-13 106.6 21.6 187 191-393 106-323 (371)
119 PRK11194 ribosomal RNA large s 99.0 4.7E-08 1E-12 105.7 23.8 185 191-392 102-307 (372)
120 COG2100 Predicted Fe-S oxidore 99.0 2.2E-07 4.7E-12 96.1 26.5 265 193-476 108-413 (414)
121 PRK14469 ribosomal RNA large s 99.0 2.9E-08 6.3E-13 106.6 21.0 184 191-389 100-293 (343)
122 COG1856 Uncharacterized homolo 99.0 2.1E-08 4.5E-13 98.8 17.9 200 197-412 16-216 (275)
123 TIGR00048 radical SAM enzyme, 99.0 7.3E-08 1.6E-12 103.9 23.7 187 191-392 104-303 (355)
124 PRK14464 ribosomal RNA large s 99.0 5.1E-08 1.1E-12 104.1 21.2 184 193-393 97-288 (344)
125 PRK14462 ribosomal RNA large s 98.9 1.8E-07 3.9E-12 100.6 24.1 187 191-392 109-308 (356)
126 PRK14465 ribosomal RNA large s 98.9 2.1E-07 4.6E-12 99.5 23.5 179 191-386 104-294 (342)
127 COG1244 Predicted Fe-S oxidore 98.9 6.4E-08 1.4E-12 100.3 17.9 191 194-395 49-256 (358)
128 TIGR03821 AblA_like_1 lysine-2 98.9 1.2E-07 2.6E-12 101.0 20.3 183 194-402 98-288 (321)
129 PRK14454 ribosomal RNA large s 98.8 5.7E-07 1.2E-11 96.5 23.1 186 191-391 100-295 (342)
130 TIGR03820 lys_2_3_AblA lysine- 98.8 6.1E-07 1.3E-11 98.0 21.7 183 189-394 105-295 (417)
131 COG0820 Predicted Fe-S-cluster 98.8 7.3E-07 1.6E-11 94.5 21.4 187 189-391 98-299 (349)
132 PRK13762 tRNA-modifying enzyme 98.8 7.1E-07 1.5E-11 95.1 20.5 171 198-391 64-266 (322)
133 COG0731 Fe-S oxidoreductases [ 98.7 9.7E-07 2.1E-11 92.0 19.4 176 201-396 33-223 (296)
134 KOG2672 Lipoate synthase [Coen 98.7 1.5E-07 3.2E-12 95.4 12.6 177 195-386 114-295 (360)
135 COG2516 Biotin synthase-relate 98.7 4.6E-07 1E-11 94.0 16.3 226 191-433 28-272 (339)
136 TIGR03278 methan_mark_10 putat 98.4 1.8E-05 4E-10 86.6 21.0 166 204-387 37-208 (404)
137 COG0535 Predicted Fe-S oxidore 98.4 6.6E-05 1.4E-09 79.7 23.9 181 191-389 18-200 (347)
138 KOG2900 Biotin synthase [Coenz 98.3 9.7E-07 2.1E-11 88.4 7.4 182 199-395 91-278 (380)
139 PRK13745 anaerobic sulfatase-m 98.3 5.6E-05 1.2E-09 83.4 21.8 181 191-387 12-206 (412)
140 TIGR02494 PFLE_PFLC glycyl-rad 98.3 4.7E-05 1E-09 80.0 18.2 152 220-392 105-264 (295)
141 PF01938 TRAM: TRAM domain; I 98.3 4.4E-06 9.6E-11 67.0 8.1 57 421-477 1-61 (61)
142 TIGR03365 Bsubt_queE 7-cyano-7 98.3 8.4E-05 1.8E-09 76.0 19.5 148 193-375 24-176 (238)
143 PRK13758 anaerobic sulfatase-m 98.2 0.00018 4E-09 77.9 22.8 173 196-383 9-193 (370)
144 COG4277 Predicted DNA-binding 98.2 2.5E-05 5.3E-10 80.4 14.7 190 199-399 61-270 (404)
145 COG1533 SplB DNA repair photol 98.2 5.9E-05 1.3E-09 79.5 18.0 186 194-387 31-224 (297)
146 COG1180 PflA Pyruvate-formate 98.0 0.00028 6E-09 73.2 18.4 172 193-385 36-214 (260)
147 KOG2535 RNA polymerase II elon 98.0 5.5E-05 1.2E-09 79.0 13.0 186 219-414 148-363 (554)
148 COG0641 AslB Arylsulfatase reg 98.0 0.00027 5.8E-09 77.0 18.5 199 202-415 18-224 (378)
149 COG1509 KamA Lysine 2,3-aminom 97.9 0.00067 1.5E-08 72.1 18.6 185 189-394 108-299 (369)
150 cd02068 radical_SAM_B12_BD B12 97.8 0.00015 3.2E-09 66.6 9.4 72 94-169 38-114 (127)
151 COG1625 Fe-S oxidoreductase, r 97.6 0.0014 3.1E-08 70.8 16.0 172 206-394 44-223 (414)
152 PF02310 B12-binding: B12 bind 97.4 0.00083 1.8E-08 60.6 9.2 87 73-162 15-121 (121)
153 TIGR03279 cyano_FeS_chp putati 97.2 0.01 2.2E-07 65.4 15.4 109 305-416 139-255 (433)
154 COG1313 PflX Uncharacterized F 97.1 0.0069 1.5E-07 62.7 12.6 176 200-396 126-306 (335)
155 TIGR00640 acid_CoA_mut_C methy 97.0 0.0077 1.7E-07 56.1 11.1 101 59-163 3-121 (132)
156 PRK10076 pyruvate formate lyas 97.0 0.036 7.7E-07 55.9 16.5 153 219-389 17-172 (213)
157 COG0602 NrdG Organic radical a 96.8 0.0033 7.2E-08 63.3 7.0 69 193-268 24-97 (212)
158 PF13353 Fer4_12: 4Fe-4S singl 96.5 0.0088 1.9E-07 55.1 7.5 68 198-269 11-82 (139)
159 TIGR02826 RNR_activ_nrdG3 anae 96.4 0.0077 1.7E-07 57.2 6.5 68 194-268 17-86 (147)
160 cd02067 B12-binding B12 bindin 96.4 0.016 3.4E-07 52.5 8.2 78 75-154 16-111 (119)
161 PF13394 Fer4_14: 4Fe-4S singl 96.2 0.014 3.1E-07 52.4 7.0 54 198-251 4-61 (119)
162 PRK02261 methylaspartate mutas 96.1 0.085 1.8E-06 49.5 11.7 104 60-165 5-133 (137)
163 cd02065 B12-binding_like B12 b 96.0 0.013 2.8E-07 53.0 5.7 82 76-163 17-116 (125)
164 cd02072 Glm_B12_BD B12 binding 95.6 0.065 1.4E-06 49.7 8.5 85 76-164 17-125 (128)
165 TIGR01501 MthylAspMutase methy 95.5 0.1 2.2E-06 48.8 9.8 88 75-164 18-130 (134)
166 cd03174 DRE_TIM_metallolyase D 95.5 0.72 1.6E-05 47.2 17.1 151 218-382 13-166 (265)
167 COG2108 Uncharacterized conser 95.4 0.17 3.6E-06 53.5 11.5 162 195-384 31-201 (353)
168 COG5014 Predicted Fe-S oxidore 95.2 0.7 1.5E-05 44.8 14.3 156 199-375 48-213 (228)
169 COG2185 Sbm Methylmalonyl-CoA 94.7 0.31 6.7E-06 46.0 10.2 102 58-163 12-131 (143)
170 TIGR02491 NrdG anaerobic ribon 94.7 0.076 1.7E-06 50.6 6.4 66 200-269 23-93 (154)
171 cd02071 MM_CoA_mut_B12_BD meth 94.4 0.27 5.8E-06 44.9 9.1 77 76-154 17-111 (122)
172 KOG2876 Molybdenum cofactor bi 93.5 0.22 4.9E-06 51.2 7.3 183 196-399 15-204 (323)
173 PRK11121 nrdG anaerobic ribonu 93.4 0.52 1.1E-05 45.0 9.5 66 200-270 24-96 (154)
174 PLN02746 hydroxymethylglutaryl 93.3 3.1 6.7E-05 45.1 16.2 145 218-381 62-216 (347)
175 PRK09426 methylmalonyl-CoA mut 92.7 0.93 2E-05 53.6 11.9 102 58-163 582-701 (714)
176 cd02070 corrinoid_protein_B12- 91.7 0.5 1.1E-05 47.0 7.1 72 75-150 99-189 (201)
177 PRK05692 hydroxymethylglutaryl 90.9 8.8 0.00019 40.5 15.8 147 218-381 20-174 (287)
178 cd07938 DRE_TIM_HMGL 3-hydroxy 90.5 10 0.00022 39.8 15.7 149 217-381 13-168 (274)
179 KOG2492 CDK5 activator-binding 88.9 0.23 5E-06 53.8 2.0 51 50-109 386-437 (552)
180 TIGR02370 pyl_corrinoid methyl 88.8 1 2.3E-05 44.7 6.5 71 74-148 100-189 (197)
181 cd07948 DRE_TIM_HCS Saccharomy 88.2 22 0.00048 36.9 16.2 142 218-381 16-160 (262)
182 cd07939 DRE_TIM_NifV Streptomy 87.8 18 0.00039 37.3 15.2 140 219-381 15-158 (259)
183 cd02069 methionine_synthase_B1 86.3 1.8 3.8E-05 43.7 6.6 58 75-134 105-178 (213)
184 PRK11858 aksA trans-homoaconit 85.7 28 0.0006 38.2 16.0 142 219-381 21-164 (378)
185 cd07944 DRE_TIM_HOA_like 4-hyd 85.3 50 0.0011 34.4 17.5 140 219-381 15-157 (266)
186 PRK14816 NADH dehydrogenase su 85.3 2 4.2E-05 42.2 6.0 71 61-138 43-123 (182)
187 PRK14818 NADH dehydrogenase su 85.0 2.2 4.7E-05 41.5 6.1 74 59-137 31-111 (173)
188 COG3269 Predicted RNA-binding 84.6 7.7 0.00017 32.5 8.2 55 423-479 14-71 (73)
189 TIGR03217 4OH_2_O_val_ald 4-hy 83.8 56 0.0012 35.3 17.0 139 219-381 19-162 (333)
190 TIGR01957 nuoB_fam NADH-quinon 83.5 2.5 5.4E-05 40.1 5.7 62 73-137 29-98 (145)
191 PF00682 HMGL-like: HMGL-like 81.2 8.7 0.00019 38.8 9.2 144 220-381 10-156 (237)
192 cd07940 DRE_TIM_IPMS 2-isoprop 80.8 58 0.0013 33.7 15.4 145 219-381 15-162 (268)
193 TIGR02660 nifV_homocitr homoci 80.5 46 0.00099 36.3 15.1 140 218-380 17-160 (365)
194 cd07937 DRE_TIM_PC_TC_5S Pyruv 80.2 80 0.0017 33.0 16.3 143 220-381 17-168 (275)
195 PRK08195 4-hyroxy-2-oxovalerat 79.9 94 0.002 33.6 17.7 159 219-411 20-183 (337)
196 TIGR02090 LEU1_arch isopropylm 79.0 73 0.0016 34.7 16.0 142 218-381 16-160 (363)
197 PRK07535 methyltetrahydrofolat 78.8 20 0.00044 37.3 11.1 145 217-375 18-184 (261)
198 PRK00915 2-isopropylmalate syn 78.7 50 0.0011 37.8 15.2 147 218-381 20-168 (513)
199 PRK14813 NADH dehydrogenase su 78.3 1.7 3.6E-05 42.9 2.7 61 73-136 40-107 (189)
200 PRK06411 NADH dehydrogenase su 78.2 4.2 9.1E-05 40.1 5.4 64 73-137 47-115 (183)
201 PF04016 DUF364: Domain of unk 77.6 3.4 7.3E-05 39.2 4.5 56 94-153 61-117 (147)
202 PRK14041 oxaloacetate decarbox 76.4 1.3E+02 0.0028 34.2 17.3 52 220-271 21-73 (467)
203 PF08821 CGGC: CGGC domain; I 75.7 7.4 0.00016 35.0 5.9 61 60-131 40-105 (107)
204 cd00423 Pterin_binding Pterin 75.1 9.6 0.00021 39.4 7.5 141 218-374 18-194 (258)
205 PRK14819 NADH dehydrogenase su 74.5 7.3 0.00016 40.2 6.1 74 59-137 31-112 (264)
206 cd07941 DRE_TIM_LeuA3 Desulfob 74.1 1.2E+02 0.0025 31.7 16.3 148 219-380 15-169 (273)
207 CHL00023 ndhK NADH dehydrogena 73.4 5.7 0.00012 40.2 5.0 62 73-137 44-112 (225)
208 cd07945 DRE_TIM_CMS Leptospira 73.3 60 0.0013 34.1 13.0 147 218-381 13-166 (280)
209 PRK09432 metF 5,10-methylenete 72.8 80 0.0017 33.5 13.8 50 219-268 92-141 (296)
210 PRK14815 NADH dehydrogenase su 72.4 8.3 0.00018 37.9 5.8 73 60-137 34-114 (183)
211 TIGR00973 leuA_bact 2-isopropy 69.0 1E+02 0.0023 35.1 14.6 146 218-381 17-165 (494)
212 PRK09389 (R)-citramalate synth 68.0 1.7E+02 0.0036 33.4 15.9 142 218-381 18-162 (488)
213 PRK12344 putative alpha-isopro 67.1 1.4E+02 0.0031 34.3 15.2 150 218-380 21-176 (524)
214 COG0685 MetF 5,10-methylenetet 67.0 1.2E+02 0.0027 32.0 13.7 119 219-356 87-210 (291)
215 cd07943 DRE_TIM_HOA 4-hydroxy- 66.5 1.6E+02 0.0035 30.3 17.5 139 219-381 17-160 (263)
216 cd00739 DHPS DHPS subgroup of 66.3 1.2E+02 0.0026 31.4 13.3 63 219-286 19-87 (257)
217 PRK14040 oxaloacetate decarbox 66.0 2.5E+02 0.0054 32.9 17.0 51 220-271 23-75 (593)
218 TIGR01496 DHPS dihydropteroate 65.8 1.1E+02 0.0024 31.7 12.9 67 216-287 15-87 (257)
219 TIGR02082 metH 5-methyltetrahy 65.6 11 0.00024 47.2 6.4 60 75-136 749-824 (1178)
220 COG3260 Ni,Fe-hydrogenase III 65.2 9 0.00019 35.9 4.1 59 67-135 28-88 (148)
221 TIGR01108 oadA oxaloacetate de 65.0 2.6E+02 0.0056 32.7 16.9 52 220-271 17-69 (582)
222 PRK14814 NADH dehydrogenase su 64.4 11 0.00024 37.2 4.8 55 82-137 59-114 (186)
223 PRK11613 folP dihydropteroate 63.8 1.9E+02 0.0042 30.5 14.3 139 218-374 32-207 (282)
224 cd03315 MLE_like Muconate lact 63.2 1.1E+02 0.0023 31.5 12.3 93 222-326 85-178 (265)
225 PF06180 CbiK: Cobalt chelatas 61.9 74 0.0016 33.2 10.7 151 222-394 56-215 (262)
226 PRK14820 NADH dehydrogenase su 59.8 23 0.00049 34.9 6.0 66 65-137 41-114 (180)
227 PRK09282 pyruvate carboxylase 59.6 3.1E+02 0.0068 32.1 16.4 52 220-271 22-74 (592)
228 COG0159 TrpA Tryptophan syntha 59.4 2.3E+02 0.005 29.7 14.2 26 320-345 69-94 (265)
229 COG3473 Maleate cis-trans isom 59.2 17 0.00037 36.6 5.1 32 58-92 118-149 (238)
230 PRK09490 metH B12-dependent me 58.6 18 0.00038 45.7 6.3 60 75-136 768-843 (1229)
231 PLN03228 methylthioalkylmalate 58.6 2.2E+02 0.0047 32.7 14.5 150 218-381 100-258 (503)
232 TIGR00612 ispG_gcpE 1-hydroxy- 57.8 1.9E+02 0.0041 31.4 12.9 139 220-374 30-190 (346)
233 TIGR02990 ectoine_eutA ectoine 57.6 41 0.00088 34.6 7.8 94 58-163 120-222 (239)
234 COG1964 Predicted Fe-S oxidore 57.2 2.2E+02 0.0049 32.0 13.7 155 209-385 78-241 (475)
235 PRK12581 oxaloacetate decarbox 54.2 3.5E+02 0.0076 30.7 15.0 50 221-271 32-83 (468)
236 cd02072 Glm_B12_BD B12 binding 53.2 92 0.002 29.0 8.7 57 327-392 62-119 (128)
237 TIGR00977 LeuA_rel 2-isopropyl 52.4 4.2E+02 0.0091 30.5 16.7 151 218-382 17-174 (526)
238 COG1618 Predicted nucleotide k 52.0 1.1E+02 0.0025 29.9 9.2 74 94-167 99-176 (179)
239 COG0821 gcpE 1-hydroxy-2-methy 51.7 3E+02 0.0064 29.9 13.0 136 219-374 31-192 (361)
240 TIGR00642 mmCoA_mut_beta methy 51.6 91 0.002 36.6 10.3 103 58-163 494-614 (619)
241 cd00537 MTHFR Methylenetetrahy 48.7 99 0.0021 32.1 9.2 119 220-359 69-198 (274)
242 TIGR01501 MthylAspMutase methy 48.6 1.1E+02 0.0024 28.6 8.5 58 326-392 63-121 (134)
243 COG5012 Predicted cobalamin bi 48.5 32 0.00069 35.0 5.1 50 75-126 121-184 (227)
244 PLN02321 2-isopropylmalate syn 48.4 1.9E+02 0.004 34.2 12.1 146 218-381 102-259 (632)
245 PF13552 DUF4127: Protein of u 48.2 52 0.0011 37.6 7.5 57 75-131 280-351 (497)
246 COG1832 Predicted CoA-binding 48.0 82 0.0018 29.8 7.4 61 65-131 21-103 (140)
247 PRK13292 trifunctional NADH de 47.9 28 0.0006 41.9 5.4 73 60-137 23-103 (788)
248 PRK08091 ribulose-phosphate 3- 47.5 3.3E+02 0.0071 27.9 16.8 152 220-415 21-174 (228)
249 PRK14817 NADH dehydrogenase su 47.3 29 0.00064 34.1 4.6 61 73-136 47-115 (181)
250 PRK13168 rumA 23S rRNA m(5)U19 47.2 92 0.002 34.8 9.2 57 427-485 15-74 (443)
251 COG2014 Uncharacterized conser 47.1 32 0.0007 34.7 4.9 58 94-155 163-221 (250)
252 cd00452 KDPG_aldolase KDPG and 46.6 2.9E+02 0.0062 26.9 12.4 116 218-383 10-125 (190)
253 PF08902 DUF1848: Domain of un 46.6 2.3E+02 0.005 29.8 11.2 50 219-270 54-109 (266)
254 cd07942 DRE_TIM_LeuA Mycobacte 46.2 3.8E+02 0.0083 28.3 13.5 143 218-374 17-168 (284)
255 TIGR01227 hutG formimidoylglut 46.1 3.1E+02 0.0068 29.0 12.7 156 224-389 98-289 (307)
256 PRK12330 oxaloacetate decarbox 45.6 5.2E+02 0.011 29.7 16.5 52 220-271 23-75 (499)
257 PF04481 DUF561: Protein of un 45.6 3.5E+02 0.0077 27.7 14.6 130 219-381 22-151 (242)
258 PRK12330 oxaloacetate decarbox 44.9 2.5E+02 0.0054 32.2 12.1 175 221-427 152-337 (499)
259 TIGR00676 fadh2 5,10-methylene 43.9 1.9E+02 0.0042 30.0 10.5 127 220-372 69-206 (272)
260 TIGR03572 WbuZ glycosyl amidat 43.8 3.5E+02 0.0075 27.1 12.1 131 227-386 33-177 (232)
261 cd04731 HisF The cyclase subun 43.4 3.4E+02 0.0073 27.4 12.0 135 225-386 28-173 (243)
262 KOG1160 Fe-S oxidoreductase [E 42.9 5.5E+02 0.012 29.1 14.0 208 197-427 288-528 (601)
263 PLN02540 methylenetetrahydrofo 42.6 1.9E+02 0.0041 33.6 10.9 52 219-270 68-125 (565)
264 TIGR01754 flav_RNR ribonucleot 42.6 68 0.0015 29.6 6.2 62 75-136 18-92 (140)
265 PRK14042 pyruvate carboxylase 42.4 5.3E+02 0.012 30.3 14.6 45 326-374 150-195 (596)
266 COG0119 LeuA Isopropylmalate/h 42.4 4.8E+02 0.01 29.1 13.7 145 218-381 18-165 (409)
267 COG2265 TrmA SAM-dependent met 42.3 88 0.0019 35.1 8.0 55 426-482 3-60 (432)
268 PRK15452 putative protease; Pr 41.9 1.3E+02 0.0027 34.0 9.2 81 295-383 16-97 (443)
269 PF00290 Trp_syntA: Tryptophan 40.8 3.1E+02 0.0068 28.6 11.3 32 348-382 116-147 (259)
270 COG1941 FrhG Coenzyme F420-red 38.8 60 0.0013 33.4 5.4 67 66-137 15-90 (247)
271 TIGR00284 dihydropteroate synt 38.6 2.7E+02 0.0058 31.9 11.2 126 224-373 165-305 (499)
272 PRK00366 ispG 4-hydroxy-3-meth 38.1 5.8E+02 0.012 28.0 13.7 140 219-374 37-199 (360)
273 cd04723 HisA_HisF Phosphoribos 37.8 2.5E+02 0.0054 28.5 10.0 130 225-385 36-168 (233)
274 PF00809 Pterin_bind: Pterin b 37.4 1.3E+02 0.0028 30.0 7.7 142 219-374 14-191 (210)
275 PRK10812 putative DNAse; Provi 37.4 1.4E+02 0.0029 31.1 8.1 123 222-375 21-146 (265)
276 PF05818 TraT: Enterobacterial 36.4 63 0.0014 32.7 5.1 49 51-101 14-65 (215)
277 PF00834 Ribul_P_3_epim: Ribul 36.2 2.5E+02 0.0055 28.0 9.5 152 221-416 9-162 (201)
278 PF10649 DUF2478: Protein of u 36.2 60 0.0013 31.4 4.8 61 64-130 68-128 (159)
279 PRK13585 1-(5-phosphoribosyl)- 36.0 4.6E+02 0.01 26.3 12.0 133 226-385 34-172 (241)
280 TIGR00696 wecB_tagA_cpsF bacte 36.0 1.7E+02 0.0037 28.6 8.1 52 328-383 57-108 (177)
281 PRK09271 flavodoxin; Provision 35.6 1E+02 0.0022 29.3 6.3 60 75-134 18-94 (160)
282 KOG3799 Rab3 effector RIM1 and 35.5 14 0.00031 34.4 0.4 17 197-213 75-91 (169)
283 cd03319 L-Ala-DL-Glu_epimerase 35.5 5.5E+02 0.012 27.0 13.0 134 222-377 134-281 (316)
284 cd05014 SIS_Kpsf KpsF-like pro 35.3 1.5E+02 0.0033 26.3 7.2 67 63-132 3-82 (128)
285 cd05013 SIS_RpiR RpiR-like pro 34.8 1.8E+02 0.0039 25.7 7.6 68 63-133 16-96 (139)
286 PRK12331 oxaloacetate decarbox 34.0 7.3E+02 0.016 28.0 17.8 140 220-381 22-173 (448)
287 PRK14024 phosphoribosyl isomer 33.8 5.2E+02 0.011 26.2 14.1 131 225-384 33-168 (241)
288 TIGR00262 trpA tryptophan synt 33.8 4E+02 0.0088 27.5 10.9 59 320-379 62-144 (256)
289 PLN02495 oxidoreductase, actin 33.4 1.2E+02 0.0026 33.5 7.2 58 327-387 95-152 (385)
290 COG5561 Predicted metal-bindin 32.3 1.5E+02 0.0033 26.0 6.0 65 58-132 28-97 (101)
291 TIGR00736 nifR3_rel_arch TIM-b 32.1 3.5E+02 0.0076 27.7 9.9 135 229-385 34-171 (231)
292 cd03328 MR_like_3 Mandelate ra 32.1 3.5E+02 0.0075 29.2 10.5 95 221-326 137-231 (352)
293 PRK02261 methylaspartate mutas 31.9 4.3E+02 0.0092 24.6 9.8 56 327-392 66-123 (137)
294 PF06283 ThuA: Trehalose utili 31.7 1.1E+02 0.0023 30.5 6.1 55 74-129 20-85 (217)
295 PF02219 MTHFR: Methylenetetra 31.3 6.3E+02 0.014 26.4 12.6 114 220-353 81-208 (287)
296 PLN02615 arginase 31.0 7.1E+02 0.015 26.9 13.4 155 223-389 132-315 (338)
297 COG0826 Collagenase and relate 30.8 2.3E+02 0.0051 30.8 8.8 73 305-382 27-99 (347)
298 TIGR03127 RuMP_HxlB 6-phospho 30.7 2.4E+02 0.0052 26.9 8.2 71 59-134 31-109 (179)
299 PRK13774 formimidoylglutamase; 30.7 4.9E+02 0.011 27.6 11.2 157 223-389 106-293 (311)
300 PHA01735 hypothetical protein 30.1 74 0.0016 26.4 3.6 43 358-406 29-75 (76)
301 cd01836 FeeA_FeeB_like SGNH_hy 29.9 1.9E+02 0.0041 27.5 7.3 67 60-134 40-115 (191)
302 cd01301 rDP_like renal dipepti 29.9 7.1E+02 0.015 26.5 13.2 134 227-382 116-262 (309)
303 PF03698 UPF0180: Uncharacteri 29.8 52 0.0011 28.1 2.9 27 75-101 10-41 (80)
304 PRK13111 trpA tryptophan synth 29.3 1.7E+02 0.0038 30.3 7.3 26 320-345 64-89 (258)
305 cd01822 Lysophospholipase_L1_l 28.5 2.8E+02 0.006 25.8 8.1 66 60-133 36-109 (177)
306 cd03409 Chelatase_Class_II Cla 28.4 2.4E+02 0.0051 23.9 7.0 60 329-392 16-75 (101)
307 PF08392 FAE1_CUT1_RppA: FAE1/ 27.8 64 0.0014 34.2 3.7 57 78-139 91-151 (290)
308 TIGR00677 fadh2_euk methylenet 27.2 7.4E+02 0.016 26.0 13.7 117 220-356 70-196 (281)
309 PF03808 Glyco_tran_WecB: Glyc 27.2 2.1E+02 0.0045 27.6 7.0 53 328-383 57-109 (172)
310 PF00296 Bac_luciferase: Lucif 27.1 4.1E+02 0.0088 27.5 9.8 110 222-343 21-140 (307)
311 PRK11543 gutQ D-arabinose 5-ph 26.9 2.3E+02 0.0051 29.8 8.0 71 59-134 43-126 (321)
312 cd03316 MR_like Mandelate race 26.9 6.4E+02 0.014 26.9 11.4 96 222-323 139-235 (357)
313 COG1679 Predicted aconitase [G 26.9 1.1E+02 0.0024 33.5 5.3 70 60-136 289-359 (403)
314 COG3925 N-terminal domain of t 26.6 89 0.0019 27.5 3.7 48 75-133 20-67 (103)
315 PF04551 GcpE: GcpE protein; 26.6 2.1E+02 0.0045 31.3 7.3 136 219-375 26-201 (359)
316 TIGR00035 asp_race aspartate r 26.3 54 0.0012 33.1 2.9 72 58-134 117-196 (229)
317 COG2875 CobM Precorrin-4 methy 26.3 5.5E+02 0.012 26.6 9.8 35 219-253 57-91 (254)
318 TIGR03555 F420_mer 5,10-methyl 26.2 7.3E+02 0.016 26.3 11.6 105 221-342 9-122 (325)
319 PRK00694 4-hydroxy-3-methylbut 26.1 7.8E+02 0.017 28.8 12.0 138 219-373 40-225 (606)
320 cd03329 MR_like_4 Mandelate ra 26.0 5.2E+02 0.011 28.0 10.6 95 221-324 142-236 (368)
321 cd03321 mandelate_racemase Man 25.6 3.8E+02 0.0083 28.8 9.5 137 222-377 141-290 (355)
322 PRK00923 sirohydrochlorin coba 25.3 2.7E+02 0.0058 25.1 7.0 60 329-393 17-77 (126)
323 PRK14042 pyruvate carboxylase 25.2 8.2E+02 0.018 28.7 12.4 148 218-391 90-240 (596)
324 PRK14017 galactonate dehydrata 25.1 7.2E+02 0.016 27.1 11.5 100 222-325 124-225 (382)
325 cd03063 TRX_Fd_FDH_beta TRX-li 25.0 1.8E+02 0.004 25.4 5.5 69 99-167 5-79 (92)
326 PF01168 Ala_racemase_N: Alani 24.9 5.2E+02 0.011 25.2 9.6 101 227-358 55-157 (218)
327 PF13714 PEP_mutase: Phosphoen 24.8 5.7E+02 0.012 26.2 10.0 83 327-415 52-134 (238)
328 cd05005 SIS_PHI Hexulose-6-pho 24.8 3.2E+02 0.0069 26.2 7.8 73 59-136 34-114 (179)
329 TIGR00007 phosphoribosylformim 24.4 7.1E+02 0.015 24.7 12.7 134 225-385 29-168 (230)
330 PRK12331 oxaloacetate decarbox 24.3 7E+02 0.015 28.2 11.4 102 221-342 151-252 (448)
331 KOG2368 Hydroxymethylglutaryl- 24.3 2.5E+02 0.0054 28.9 6.9 64 191-271 149-212 (316)
332 PRK02714 O-succinylbenzoate sy 24.0 6.5E+02 0.014 26.7 10.7 92 224-325 120-214 (320)
333 COG1152 CdhA CO dehydrogenase/ 23.9 1.1E+02 0.0025 35.3 4.9 43 96-138 500-542 (772)
334 PRK03501 ppnK inorganic polyph 23.7 3.3E+02 0.0072 28.4 8.1 60 58-123 2-61 (264)
335 PF00490 ALAD: Delta-aminolevu 23.6 1.7E+02 0.0037 31.5 6.0 52 220-271 53-111 (324)
336 PRK01076 L-rhamnose isomerase; 23.5 4.3E+02 0.0094 29.4 9.1 109 322-432 65-186 (419)
337 COG4252 Predicted transmembran 23.3 4.1E+02 0.0089 29.6 9.1 57 314-374 66-124 (400)
338 cd01096 Alkanal_monooxygenase 23.3 7.5E+02 0.016 26.0 11.0 108 223-342 21-138 (315)
339 PRK13753 dihydropteroate synth 23.3 9E+02 0.02 25.5 12.5 63 218-286 19-87 (279)
340 PRK09282 pyruvate carboxylase 23.2 9.8E+02 0.021 28.0 12.6 124 221-375 151-274 (592)
341 PF05853 DUF849: Prokaryotic p 23.1 7.2E+02 0.016 25.9 10.6 138 218-373 20-161 (272)
342 cd03412 CbiK_N Anaerobic cobal 23.1 2.3E+02 0.005 25.9 6.1 60 331-390 18-84 (127)
343 COG0648 Nfo Endonuclease IV [D 22.9 8.3E+02 0.018 25.9 10.8 124 218-382 81-211 (280)
344 smart00876 BATS Biotin and Thi 22.8 80 0.0017 27.4 2.9 22 381-402 2-24 (94)
345 TIGR03820 lys_2_3_AblA lysine- 22.8 1.1E+03 0.024 26.4 12.9 94 237-349 186-280 (417)
346 cd00635 PLPDE_III_YBL036c_like 22.7 3.8E+02 0.0082 26.7 8.2 63 306-374 117-184 (222)
347 cd04823 ALAD_PBGS_aspartate_ri 22.4 3.4E+02 0.0073 29.2 7.8 59 212-271 43-108 (320)
348 TIGR03278 methan_mark_10 putat 22.3 48 0.001 36.8 1.7 17 199-215 6-22 (404)
349 cd06556 ICL_KPHMT Members of t 22.2 2.5E+02 0.0054 28.9 6.7 54 327-381 55-108 (240)
350 cd00945 Aldolase_Class_I Class 22.1 6.7E+02 0.014 23.6 14.9 134 222-382 11-149 (201)
351 PRK08883 ribulose-phosphate 3- 21.8 5.6E+02 0.012 25.9 9.2 134 220-395 8-146 (220)
352 PRK15452 putative protease; Pr 21.8 1.1E+03 0.025 26.4 12.4 24 227-250 13-36 (443)
353 cd03326 MR_like_1 Mandelate ra 21.7 1E+03 0.022 26.1 11.9 140 221-377 159-313 (385)
354 TIGR01748 rhaA L-rhamnose isom 21.7 3.9E+02 0.0084 29.7 8.3 109 319-432 58-182 (414)
355 cd03325 D-galactonate_dehydrat 21.6 1E+03 0.022 25.5 13.2 143 222-377 123-280 (352)
356 PF06968 BATS: Biotin and Thia 21.6 1.1E+02 0.0024 26.5 3.5 22 382-403 3-24 (93)
357 TIGR01230 agmatinase agmatinas 21.5 9.2E+02 0.02 25.0 13.5 151 224-389 80-256 (275)
358 COG0113 HemB Delta-aminolevuli 21.4 7E+02 0.015 26.8 9.8 76 192-271 33-115 (330)
359 PRK09283 delta-aminolevulinic 21.4 3.5E+02 0.0077 29.1 7.7 56 213-271 49-111 (323)
360 COG0773 MurC UDP-N-acetylmuram 21.3 4.8E+02 0.01 29.6 9.2 65 93-166 64-129 (459)
361 PF03016 Exostosin: Exostosin 21.3 1.1E+02 0.0023 31.7 4.0 34 68-102 32-66 (302)
362 cd00384 ALAD_PBGS Porphobilino 21.3 3.9E+02 0.0085 28.7 8.0 57 212-271 40-103 (314)
363 PRK13384 delta-aminolevulinic 21.1 3.8E+02 0.0083 28.8 7.9 57 212-271 50-113 (322)
364 cd06533 Glyco_transf_WecG_TagA 20.7 2.8E+02 0.006 26.7 6.5 54 327-383 54-107 (171)
365 cd04824 eu_ALAD_PBGS_cysteine_ 20.7 4.1E+02 0.0089 28.6 8.0 58 213-271 41-106 (320)
366 KOG0924 mRNA splicing factor A 20.6 4.3E+02 0.0092 31.7 8.6 64 305-374 522-586 (1042)
367 COG0036 Rpe Pentose-5-phosphat 20.6 9.2E+02 0.02 24.6 11.6 84 227-325 74-159 (220)
368 PRK11104 hemG protoporphyrinog 20.4 3.1E+02 0.0068 26.5 6.8 63 71-134 13-87 (177)
369 PF01261 AP_endonuc_2: Xylose 20.3 7.3E+02 0.016 23.4 9.8 71 305-384 9-93 (213)
370 TIGR03168 1-PFK hexose kinase, 20.2 4.6E+02 0.0099 27.0 8.5 66 59-131 98-163 (303)
371 PRK08195 4-hyroxy-2-oxovalerat 20.1 3.6E+02 0.0079 29.1 7.8 55 221-281 141-195 (337)
372 cd05006 SIS_GmhA Phosphoheptos 20.1 4.3E+02 0.0093 25.2 7.7 37 94-133 100-137 (177)
373 PRK01033 imidazole glycerol ph 20.1 9.5E+02 0.021 24.6 13.0 138 225-390 31-179 (258)
No 1
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=8e-97 Score=755.65 Aligned_cols=476 Identities=63% Similarity=1.037 Sum_probs=449.8
Q ss_pred CCchhhhhccCCCCCCCCCCCCCCCcceecccccCCCCCc-cCCCCcccCCCCCCCCCCceEEEEecCCccChhHHHHHH
Q 006956 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRL-HDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMA 79 (624)
Q Consensus 1 ~~died~~~~~~~~~~~~~~r~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~i~TlGC~~N~~Dse~~~ 79 (624)
||||||++ +++|++|++|++.+.+ |.||.+|+...+ .+.+. +..+.+|.|||+++|||+||||++|++|||||+
T Consensus 1 ~ddiedl~---s~~d~kp~~r~~~~k~-v~pk~~kr~~~k~~q~ee-~~~ps~s~ipgtqki~iktwgcshnnsdseyma 75 (547)
T KOG4355|consen 1 MDDIEDLL---SGGDAKPGFRLPLNKV-VNPKTNKRISSKPDQIEE-SNRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMA 75 (547)
T ss_pred CccHHHHh---hCCCCCCccccccccc-cccccccccccCchhhhh-cCCCccccCCCccEEEEEeecccCCCchhHHHh
Confidence 79999999 7789999999997665 999987754322 22222 223568999999999999999999999999999
Q ss_pred HHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcChhhhcCCccEEEcCCchhHHH
Q 006956 80 GQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159 (624)
Q Consensus 80 ~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~e~~~~~~d~VvG~~~~~~l~ 159 (624)
|+|.+.||.++. +++||+|++|||||.++++..+++.|.+.++.++++|++||.||..|++..+.+.+|||.+++++++
T Consensus 76 gqlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvv 154 (547)
T KOG4355|consen 76 GQLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVV 154 (547)
T ss_pred hhHHhhhhccCC-cccccEEEecccccCCchHHHHHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHH
Confidence 999999999999 9999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeEeeccccCCCCCCCcccCCceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCc
Q 006956 160 EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239 (624)
Q Consensus 160 ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~Gvk 239 (624)
|++++.++|+.++++.+...+++++|+.|+++++..|.|+.||-+.|+||...++||..-++|++++++.++...+.|+.
T Consensus 155 evveetlkghsvrll~rr~~galdlpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~ 234 (547)
T KOG4355|consen 155 EVVEETLKGHSVRLLTRRTLGALDLPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVC 234 (547)
T ss_pred HHHHHHhccceEeeeecccccccCchhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcE
Confidence 99999999999999988778889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHH
Q 006956 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319 (624)
Q Consensus 240 eI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~v 319 (624)
+||+++.|+++||+|.+.+++.||+++.+.+| ..+++|+++++|+++.+++++++..+++++++.++|+|+|||||.+
T Consensus 235 eIwltsedTgaygrdig~slp~ll~klv~~iP--e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsv 312 (547)
T KOG4355|consen 235 EIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP--ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSV 312 (547)
T ss_pred EEEecccccchhhhhhhhhhHHHHHHHHHhcc--hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhH
Confidence 99999999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCC
Q 006956 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 399 (624)
Q Consensus 320 Lk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp 399 (624)
|..|+|.|...++...++.+++.+|||.|.||||+||||||++||++|++++++++|+.++|++|+|+||||+++|+++|
T Consensus 313 l~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~ 392 (547)
T KOG4355|consen 313 LTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIP 392 (547)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCccccCCCcEEEEEEEEEecCCeee-----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEE
Q 006956 400 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL-----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 474 (624)
Q Consensus 400 ~~~~~~R~~~L~~l~~~~~~~~~~vG~~~~VLve~~~~~g~~~-----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g 474 (624)
..++++|.++|.++++++..|...+|+..+|||++.+.|+.++ +|.||+++.+...+|+++.|+||++++|+|.|
T Consensus 393 a~~vkkRTk~ls~lF~sy~pYtd~ige~~rVlVTEva~Dklh~VgHnksYeQVLvp~~~~~mGt~vevrItsvgkfsm~g 472 (547)
T KOG4355|consen 393 AVEVKKRTKALSELFRSYTPYTDEIGELHRVLVTEVAADKLHYVGHNKSYEQVLVPLEYCKMGTWVEVRITSVGKFSMIG 472 (547)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccEEEEEEEEeeccceeeeccccceeEEEeecchhhccceEEEEEEeeeeeeeec
Confidence 9999999999999999999999999999999999999888765 89999999888899999999999999999999
Q ss_pred EEEecccccc
Q 006956 475 EVIKILNQVD 484 (624)
Q Consensus 475 ~~v~~~~~~~ 484 (624)
+++...+.+.
T Consensus 473 ep~s~~~d~~ 482 (547)
T KOG4355|consen 473 EPASDQEDQT 482 (547)
T ss_pred cccchhhhcC
Confidence 9998755444
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-90 Score=740.95 Aligned_cols=415 Identities=35% Similarity=0.612 Sum_probs=368.1
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCc-eeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccc
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCV 134 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~-~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~ 134 (624)
|+||||+||||+||++|||.|++.|.+.|| +.++++++||+||||||+|+..|++++++.|+++++.+ .+|+|+||+
T Consensus 2 ~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~ 81 (437)
T COG0621 2 MKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCL 81 (437)
T ss_pred CceEEEEecCCCccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 789999999999999999999999999999 69999999999999999999999999999999998776 579999999
Q ss_pred cCcChh-hhcCC-ccEEEcCCchhHHHHHHHHHhcCCeeE--eeccccCCC-CCCCcccCCceEEEEEeCCCCCCCCCCc
Q 006956 135 PQGSRD-LKELE-GVSIVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYC 209 (624)
Q Consensus 135 aq~~~e-~~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~--~~~~~~~~~-~~lp~~r~~~~~a~I~isrGCp~~CsFC 209 (624)
||..++ +..+| +|.|+|++.+++++++|++...+.... ..+..+... ..+|..+.....|||+|+.||+++||||
T Consensus 82 aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfC 161 (437)
T COG0621 82 AQAEEEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFC 161 (437)
T ss_pred cccCHHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCCeEEEEEhhcCcCCCCCee
Confidence 999966 45666 678999999999999999886553322 111111111 1223335667899999999999999999
Q ss_pred ccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc---CCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006956 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (624)
Q Consensus 210 ~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~ 286 (624)
++|++||+.||||+++|++|++.|+++|++||+|+|||+++||.|.+ .+|.+||+.+.+ ++ |+.|+|++|++|.
T Consensus 162 iiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~--G~~riR~~~~~P~ 238 (437)
T COG0621 162 IIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IP--GIERIRFGSSHPL 238 (437)
T ss_pred eeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CC--CceEEEEecCCch
Confidence 99999999999999999999999999999999999999999999985 789999999988 76 8999999999999
Q ss_pred chhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHH
Q 006956 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (624)
Q Consensus 287 ~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~e 366 (624)
.+++++ +..+...+++|+|||||+|||||++||+|+|+||.+++++.++++|+.+|++.++|||||||||||+|||++
T Consensus 239 ~~~d~l--I~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~ 316 (437)
T COG0621 239 EFTDDL--IEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEE 316 (437)
T ss_pred hcCHHH--HHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHH
Confidence 888876 444555589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEE-ecCCeee
Q 006956 367 TVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI-AADGIHL 442 (624)
Q Consensus 367 Tl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~-~~~g~~~ 442 (624)
|++|+++++|+++|+|+|||+||||++.|+ |+|.+++++|+++|+++++. .+.+++++|++++||||+. ++++...
T Consensus 317 tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~~~~~vG~~~~VLVe~~~~~~~~~~ 396 (437)
T COG0621 317 TLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEFNQKLVGKTLEVLVEEGGSKKGELI 396 (437)
T ss_pred HHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcCCceE
Confidence 999999999999999999999999999988 99999999999999999985 5788999999999999963 2344222
Q ss_pred ----eeEEEEEcCCCC-CCCCEEEEEEEEEecceEEEEEE
Q 006956 443 ----GYVQVLVPSTGN-MLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 443 ----~y~~V~~~~~~~-~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
+|..|.+.+... .+|++++|+|+++..++|.|+++
T Consensus 397 Grt~~~~~v~~~~~~~~~~G~~v~VkIt~~~~~~L~g~~v 436 (437)
T COG0621 397 GRTENYRPVVFGGVYTEDIGEFVEVKITEADEYSLIGEVV 436 (437)
T ss_pred EEcCCCCEEEecCcccCCCCCEEEEEEEecCCCceEEEec
Confidence 788888876423 38999999999999999999986
No 3
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=4.8e-79 Score=670.78 Aligned_cols=419 Identities=27% Similarity=0.446 Sum_probs=357.5
Q ss_pred CCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHH---HHhhCCC--CEEE
Q 006956 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA---KCKSAKK--PLVV 130 (624)
Q Consensus 56 ~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir---~~k~~~~--~VVV 130 (624)
|++++|||+||||++|++|||.|++.|.+.||++++++++||+|+||||+|++.|++++++.++ ++|+.++ +|||
T Consensus 4 ~~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv 83 (445)
T PRK14340 4 RMGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGV 83 (445)
T ss_pred CCCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 3445799999999999999999999999999999999999999999999999999999999876 4455554 5999
Q ss_pred EccccCcChh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCC-CCCcccCCceEEEEEeCCCCCCCC
Q 006956 131 AGCVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (624)
Q Consensus 131 gGc~aq~~~e-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~-~lp~~r~~~~~a~I~isrGCp~~C 206 (624)
||||||.+++ +. .++ +|.|+|++++..|++++.+...+.....++..+.+.+ .+|..+...+.+||+||||||++|
T Consensus 84 ~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~isrGC~~~C 163 (445)
T PRK14340 84 LGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVRSGSISAFVPVMRGCNNMC 163 (445)
T ss_pred eCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccCCCcEEEEEeccCCCCCC
Confidence 9999999986 43 455 6789999999999999987655432222221111211 122223345679999999999999
Q ss_pred CCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-cCCHHHHHHHHHHhCCCCCCceEEEeecCC
Q 006956 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (624)
Q Consensus 207 sFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~-~~~l~eLL~~l~~~l~~~~~~~iri~~~~p 285 (624)
+||++|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.|+.+. ..+|.+||+++.+. . +..++|+++.+|
T Consensus 164 sFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~-~--~~~rir~~~~~p 240 (445)
T PRK14340 164 AFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRA-A--PEMRIRFTTSHP 240 (445)
T ss_pred CCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhc-C--CCcEEEEccCCh
Confidence 9999999999999999999999999999999999999999999998764 35689999999763 3 457999999999
Q ss_pred cchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHH
Q 006956 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 365 (624)
Q Consensus 286 ~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~ 365 (624)
..+++++ +..+.+.+.+|++||||+||+|+++|+.|+|+|+.+++.++++++++.+||+.+.+|||+||||||++||+
T Consensus 241 ~~l~~el--l~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~ 318 (445)
T PRK14340 241 KDISESL--VRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHR 318 (445)
T ss_pred hhcCHHH--HHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHH
Confidence 8887765 44344455679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEEeeeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecC--C
Q 006956 366 QTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD--G 439 (624)
Q Consensus 366 eTl~fl~el~~~~v~i~~ysP~PGTpa~~-~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~--g 439 (624)
+|++|+++++++.+++|.|+|+||||+++ |+ ++|++++++|.++|+++++. .+++++++|++++||||+.+++ +
T Consensus 319 ~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~~~~~vG~~~~vlve~~~~~~~~ 398 (445)
T PRK14340 319 ATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAELFQRAVGSVVEVLAESESRRSSE 398 (445)
T ss_pred HHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCC
Confidence 99999999999999999999999999995 87 89999999999999999986 5788999999999999975433 3
Q ss_pred eee----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEec
Q 006956 440 IHL----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 479 (624)
Q Consensus 440 ~~~----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~ 479 (624)
.+. +|..|++++....+|++++|+|+++.+++|.|+++..
T Consensus 399 ~~~grt~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~ 442 (445)
T PRK14340 399 QLMGRTDGNRVVVFDRGGFQPGDLVRVRITGSTSATLSGEPAGN 442 (445)
T ss_pred eEEEECCCCeEEEECCCCCCCCCEEEEEEEecccccEEEEEccC
Confidence 222 7888888644445899999999999999999998764
No 4
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.6e-78 Score=672.56 Aligned_cols=417 Identities=31% Similarity=0.528 Sum_probs=361.0
Q ss_pred CCCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhCC--CCEE
Q 006956 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KPLV 129 (624)
Q Consensus 55 ~~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~i---r~~k~~~--~~VV 129 (624)
++.+++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||+|++.|+++++..| +++|+.+ .+|+
T Consensus 63 ~~~~~~~~i~T~GC~~N~~Dse~~~~~L~~~Gy~~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i~ 142 (509)
T PRK14327 63 MGNGRKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLIG 142 (509)
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHCcCEECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 5567889999999999999999999999999999999999999999999999999999999998 5555554 3589
Q ss_pred EEccccCcCh---hh-hcCC-ccEEEcCCchhHHHHHHHHHhcCCee--EeeccccCCCC-CCCcccCCceEEEEEeCCC
Q 006956 130 VAGCVPQGSR---DL-KELE-GVSIVGVQQIDRVVEVVEETLKGHEV--RLLHRKKLPAL-DLPKVRRNKFVEILPINVG 201 (624)
Q Consensus 130 VgGc~aq~~~---e~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~--~~~~~~~~~~~-~lp~~r~~~~~a~I~isrG 201 (624)
|+|||||..+ ++ +.++ +|.|+|++++..+++++.....+... ..+... ...+ .+|..+.....+||+|++|
T Consensus 143 v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~a~v~I~~G 221 (509)
T PRK14327 143 VCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKE-GDVIENLPKVREGNIKAWVNIMYG 221 (509)
T ss_pred EEcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeeccccc-cccccccccccCCCeEEEEEecCC
Confidence 9999999988 43 4565 67899999999999999876544321 111110 0111 2444444567899999999
Q ss_pred CCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc---CCHHHHHHHHHHhCCCCCCceE
Q 006956 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTML 278 (624)
Q Consensus 202 Cp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~---~~l~eLL~~l~~~l~~~~~~~i 278 (624)
||++|+||++|+.+|++|++|+++|++|++.+.+.|+++|+|+|+|+++||.+.. ..|.+||+.|.+ + +..|+
T Consensus 222 C~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~-~---~i~~i 297 (509)
T PRK14327 222 CDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRK-I---DIPRV 297 (509)
T ss_pred CCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHh-C---CCceE
Confidence 9999999999999999999999999999999999999999999999999998752 358899999876 3 46799
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006956 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (624)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (624)
|+.+.+|..+++++ +..+.+.+.+|+++|||+||||+++|+.|+|+|+.+++.++++.+++++|++.+++|||+||||
T Consensus 298 r~~s~~P~~i~del--i~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPg 375 (509)
T PRK14327 298 RFTTSHPRDFDDHL--IEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGFPN 375 (509)
T ss_pred EEeecCcccCCHHH--HHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeCCC
Confidence 99989999888765 4444455667899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEE
Q 006956 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 435 (624)
Q Consensus 359 ETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~ 435 (624)
||++||++|++|+++++++.+++|+|+|+||||+++|+ ++|.+++++|+++|.++++. .+.+++++|++++||||+.
T Consensus 376 ET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~~~~~G~~~~VLve~~ 455 (509)
T PRK14327 376 ETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKMKRYEGQTVEVLVEGE 455 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999998 89999999999999999996 4678999999999999986
Q ss_pred ecC--Ceee----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEe
Q 006956 436 AAD--GIHL----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478 (624)
Q Consensus 436 ~~~--g~~~----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~ 478 (624)
+++ +.+. +|..|.|+++...+|++++|+|+++..|+|.|++++
T Consensus 456 ~~~~~~~~~Grt~~~~~V~~~~~~~~~G~~v~v~I~~~~~~~l~g~~~~ 504 (509)
T PRK14327 456 SKKNPEVLAGYTRKNKLVNFKGPKSLIGQLVKVKITEAKTWSLNGELVE 504 (509)
T ss_pred ccCCCceEEEECCCCcEEEECCCCCCCCCEEEEEEEeeecceEEEEEec
Confidence 542 2222 888899976555689999999999999999999987
No 5
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8.9e-78 Score=661.01 Aligned_cols=414 Identities=25% Similarity=0.442 Sum_probs=353.1
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEEc
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~---k~~--~~~VVVgG 132 (624)
+++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||||+.+|++++++.+..+ |+. +.+|||||
T Consensus 10 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv~G 89 (449)
T PRK14332 10 LGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKRNPNLVIGVLG 89 (449)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6789999999999999999999999999999999999999999999999999999988865543 444 34699999
Q ss_pred cccCcChh-h-h-cCCccEEEcCCchhHHHHHHHHHhcCCeeEeecc-ccCCCC-CCCcccCCceEEEEEeCCCCCCCCC
Q 006956 133 CVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPAL-DLPKVRRNKFVEILPINVGCLGACT 207 (624)
Q Consensus 133 c~aq~~~e-~-~-~~~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~-~~~~~~-~lp~~r~~~~~a~I~isrGCp~~Cs 207 (624)
||||.+++ + . ..++|.|+|++++..++++++....|........ .....+ ++|......+.+||+|+||||++|+
T Consensus 90 C~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~l~isrGC~~~Cs 169 (449)
T PRK14332 90 CMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCT 169 (449)
T ss_pred cccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeecccccccccccccccccCCceEEEEecCCcCCCCC
Confidence 99999996 3 2 3467899999999999999988765543211110 001111 1232223346789999999999999
Q ss_pred CcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcc
Q 006956 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (624)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~ 287 (624)
||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. .+|.+||+++.+ .. +..|+|+++.+|..
T Consensus 170 FC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~-~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 245 (449)
T PRK14332 170 FCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQS-TDFAGLIQMLLD-ET--TIERIRFTSPHPKD 245 (449)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCc-ccHHHHHHHHhc-CC--CcceEEEECCCccc
Confidence 999999999999999999999999999999999999999999998753 468999998865 33 67899999999998
Q ss_pred hhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH
Q 006956 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367 (624)
Q Consensus 288 i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eT 367 (624)
+++++ +..+.+.+++|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||||++||++|
T Consensus 246 ~~~el--l~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~t 323 (449)
T PRK14332 246 FPDHL--LSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDT 323 (449)
T ss_pred CCHHH--HHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHH
Confidence 87765 3334455667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEEeeeCCCCccc-cCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecCC--ee
Q 006956 368 VNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG--IH 441 (624)
Q Consensus 368 l~fl~el~~~~v~i~~ysP~PGTpa~-~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~g--~~ 441 (624)
++|+++++++++++|.|+|+||||++ .|+ ++|++++++|+++|++++++ .+++++++|++++||||+.++++ .+
T Consensus 324 l~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~~~~ 403 (449)
T PRK14332 324 LAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSRKSEKQL 403 (449)
T ss_pred HHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCCCCCeE
Confidence 99999999999999999999999999 687 89999999999999999996 57889999999999999865432 22
Q ss_pred e----eeEEEEEcCC--C---CCCCCEEEEEEEEEecceEEEEEE
Q 006956 442 L----GYVQVLVPST--G---NMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 442 ~----~y~~V~~~~~--~---~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
. +|..|+++.+ . ..+|++++|+|++++.|+|.|+++
T Consensus 404 ~gr~~~~~~v~~~~~~~~~~~~~~G~~v~v~I~~~~~~~l~g~~~ 448 (449)
T PRK14332 404 CGRTPCGRMTVFPLPEGQDLSDMIGSTVSVLIESATSATLKGKIL 448 (449)
T ss_pred EEECCCCeEEEEecCCCcccccCCCCEEEEEEEecccCcEEEEEe
Confidence 2 6677777621 1 248999999999999999999976
No 6
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=4e-77 Score=655.08 Aligned_cols=416 Identities=31% Similarity=0.530 Sum_probs=358.8
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHH----hhCCCCEEEEccc
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC----KSAKKPLVVAGCV 134 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~----k~~~~~VVVgGc~ 134 (624)
++|||+||||++|++|||.|++.|.+.||+.++++++||+|+||||+|+..++++++++++++ |+++++|||||||
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv~Gc~ 80 (434)
T PRK14330 1 MKFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGVAGCV 80 (434)
T ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEEECcc
Confidence 379999999999999999999999999999999999999999999999999999999999998 5668899999999
Q ss_pred cCcChh-hhcCCccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCC--CCCcccCCceEEEEEeCCCCCCCCCCccc
Q 006956 135 PQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKT 211 (624)
Q Consensus 135 aq~~~e-~~~~~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~--~lp~~r~~~~~a~I~isrGCp~~CsFC~i 211 (624)
||.+|+ +....+|.|+|+.++..|+++|++...|... .+.....+.. ..|..+.....++|+++||||++|+||++
T Consensus 81 a~~~~ee~~~~~~d~vvg~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~CsFC~i 159 (434)
T PRK14330 81 AEKEREKLLKRGADFVIGTRAVPKVTEAVKRALNGEKV-ALFEDKLDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIV 159 (434)
T ss_pred ccCchhhHHhcCCcEEEcCCCHHHHHHHHHHHhcCCce-EeecccccccccccccccCCCcEEEEEcccCCCCCCCCCce
Confidence 999997 4455567899999999999999988766432 2111111111 11222223467899999999999999999
Q ss_pred CccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchh
Q 006956 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (624)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~ 289 (624)
|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+||+.+.+ ++ +..++++.+.+|..++
T Consensus 160 p~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~-~~--~~~~~~~~~~~p~~~~ 236 (434)
T PRK14330 160 PYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK-IE--GIERIWFLTSYPTDFS 236 (434)
T ss_pred ECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHh-cC--CceEEEEecCChhhcC
Confidence 99999999999999999999999999999999999999998764 2578999998865 44 5678888888998877
Q ss_pred HHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHH
Q 006956 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 369 (624)
Q Consensus 290 ~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~ 369 (624)
+.+ +..+.+.+.+|+++|||+||+|+++|+.|+|+|+.+++.++++.+++++||+.+.+|||+||||||+++|++|++
T Consensus 237 ~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl~ 314 (434)
T PRK14330 237 DEL--IEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFPTETEEDFMETVD 314 (434)
T ss_pred HHH--HHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHH
Confidence 655 333334455789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEeeeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecCCeee---
Q 006956 370 LIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHL--- 442 (624)
Q Consensus 370 fl~el~~~~v~i~~ysP~PGTpa~~-~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~g~~~--- 442 (624)
|+++++++++++|.|+|+||||+++ |+ ++|++++++|.++|+++++. .+++++++|++++||||+..++|.+.
T Consensus 315 fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~g~t 394 (434)
T PRK14330 315 LVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKLNERYLGKTVEIIVEAKAKNGLFYGRD 394 (434)
T ss_pred HHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEccCCCeEEEEC
Confidence 9999999999999999999999999 66 89999999999999999996 57889999999999999754444322
Q ss_pred -eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEecc
Q 006956 443 -GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 480 (624)
Q Consensus 443 -~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~ 480 (624)
+|..|+++++...+|++++|+|+++.+++|.|+++..+
T Consensus 395 ~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~~ 433 (434)
T PRK14330 395 IRNKIIAFEGEEELIGRFADVKIEKITAGPLYGKVVKIL 433 (434)
T ss_pred CCCEEEEECCCCCCCCCEEEEEEEEeecCeEEEEEEEec
Confidence 88888886544458999999999999999999988764
No 7
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.8e-77 Score=658.05 Aligned_cols=418 Identities=24% Similarity=0.442 Sum_probs=350.8
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHH---HhhC-CCCEEEEcccc
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK---CKSA-KKPLVVAGCVP 135 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~---~k~~-~~~VVVgGc~a 135 (624)
+|||+||||+||++|||.|++.|.+.||++++++++||+|+||||+|++.|+++++..+.. +|+. +.+||||||||
T Consensus 2 ~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv~GC~a 81 (455)
T PRK14335 2 TYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIILMGCMA 81 (455)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEEecccc
Confidence 8999999999999999999999999999999999999999999999999999998774443 3332 35699999999
Q ss_pred CcChh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcC---Cee--E----eeccccCCCCCC-Cc-ccCCceEEEEEeCCC
Q 006956 136 QGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKG---HEV--R----LLHRKKLPALDL-PK-VRRNKFVEILPINVG 201 (624)
Q Consensus 136 q~~~e-~-~~~~-~d~VvG~~~~~~l~ell~~~~~g---~~~--~----~~~~~~~~~~~l-p~-~r~~~~~a~I~isrG 201 (624)
|.+++ + +.++ +|.|+|++++..|++++.+...+ ... . .++..++|.+.+ |. ++.....+||+|+||
T Consensus 82 ~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~I~rG 161 (455)
T PRK14335 82 ERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMNG 161 (455)
T ss_pred cchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccCCCceEEEEhhcC
Confidence 99996 4 4455 68899999999999998765321 110 0 011122233221 21 122356799999999
Q ss_pred CCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---cCCHHHHHHHHHHhCC-CCCCc
Q 006956 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELP-PDGST 276 (624)
Q Consensus 202 Cp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~-d~---~~~l~eLL~~l~~~l~-~~~~~ 276 (624)
||++|+||++|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|++.||. +. ...+.+||++|.+... ..+..
T Consensus 162 C~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 241 (455)
T PRK14335 162 CNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIR 241 (455)
T ss_pred CCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCce
Confidence 9999999999999999999999999999999999999999999999999964 31 1368999999853211 11578
Q ss_pred eEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 006956 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (624)
Q Consensus 277 ~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf 356 (624)
|+|+.+++|..+++++ +..+.+.+.+|+++|||+||+|+++|+.|||+|+.+++.++++.+++.+||+.+.+|||+||
T Consensus 242 ~ir~~s~~p~~i~~el--l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGf 319 (455)
T PRK14335 242 WIRFMSSHPKDLSDDL--IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGF 319 (455)
T ss_pred EEEEeecCcccCCHHH--HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Confidence 9999999999888765 44444445679999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEE
Q 006956 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWIT 433 (624)
Q Consensus 357 PGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve 433 (624)
||||+++|++|++|+++++++.+++|+|+|+||||+++|+ ++|++++++|+++|+++++. .+++++++|++++||||
T Consensus 320 PgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve 399 (455)
T PRK14335 320 PGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKKMKARVGKTLPVLVE 399 (455)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 9999999999999999999999999999999999999998 89999999999999999996 57889999999999999
Q ss_pred EEecC--Ceee----eeEEEEEcCC--CCCCCCEEEEEEEEEecceEEEEEEec
Q 006956 434 EIAAD--GIHL----GYVQVLVPST--GNMLGTSALVKITSVGRWSVFGEVIKI 479 (624)
Q Consensus 434 ~~~~~--g~~~----~y~~V~~~~~--~~~~G~~v~V~I~~~~~~~l~g~~v~~ 479 (624)
+..++ |.+. +|..|+++++ ....|++++|+|+++.+++|.|+++..
T Consensus 400 ~~~~~~~~~~~g~t~~~~~v~~~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~ 453 (455)
T PRK14335 400 SRSRNNPEELFGHTELGEMTVLEGKVDETLIGRFVDVQLKELRGRTFRAHLVQE 453 (455)
T ss_pred ccccCCCCeeEEECCCCeEEEEcCCcccCCCCCEEEEEEEEcccCeEEEEEecC
Confidence 75332 3222 7888888743 234799999999999999999998854
No 8
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.9e-77 Score=657.15 Aligned_cols=420 Identities=27% Similarity=0.454 Sum_probs=357.0
Q ss_pred CCCCCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhCC--CC
Q 006956 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KP 127 (624)
Q Consensus 53 ~~~~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~i---r~~k~~~--~~ 127 (624)
.-.|++++|||+||||++|++|||.|++.|.+.||++++++++||+|+||||||+.+|++++++.+ +++|+.+ .+
T Consensus 18 ~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ 97 (467)
T PRK14329 18 AKPKNTKKLFIESYGCQMNFADSEIVASILQMAGYNTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLI 97 (467)
T ss_pred ccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcE
Confidence 336788999999999999999999999999999999999999999999999999999999999998 5556544 46
Q ss_pred EEEEccccCcChh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcCCeeEeec---cccCCCCCCCcc-cCCceEEEEEeCC
Q 006956 128 LVVAGCVPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLH---RKKLPALDLPKV-RRNKFVEILPINV 200 (624)
Q Consensus 128 VVVgGc~aq~~~e-~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~---~~~~~~~~lp~~-r~~~~~a~I~isr 200 (624)
|||||||||.+++ + ...+ +|.|+|++++..|+++++....+....... ...+++. .|.. ......++|+|||
T Consensus 98 ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~isr 176 (467)
T PRK14329 98 VGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADI-SPVRLGGNGVSAFVSIMR 176 (467)
T ss_pred EEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceecccccccccccc-ccccccCCCcEEEEEecc
Confidence 9999999999986 4 3455 789999999999999998866554221111 0111111 1111 1234678999999
Q ss_pred CCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-------CCHHHHHHHHHHhCCCC
Q 006956 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELPPD 273 (624)
Q Consensus 201 GCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-------~~l~eLL~~l~~~l~~~ 273 (624)
|||++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.|+.+.. ..|.+||+.+.+..
T Consensus 177 GCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~--- 253 (467)
T PRK14329 177 GCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAV--- 253 (467)
T ss_pred CcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcC---
Confidence 99999999999999999999999999999999999999999999999999986532 36889999887643
Q ss_pred CCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 006956 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353 (624)
Q Consensus 274 ~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I 353 (624)
+..++|+++.+|..+++++ +..+.+.+.+|++||||+||+|+++|+.|||+|+.+++.++++.++++.|++.+.+|||
T Consensus 254 ~~~~ir~~~~~p~~l~~el--l~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~I 331 (467)
T PRK14329 254 PDMRIRFSTSHPKDMTDDV--LEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMI 331 (467)
T ss_pred CCcEEEEecCCcccCCHHH--HHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEE
Confidence 3568999989999887755 33343445579999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEE
Q 006956 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVER 429 (624)
Q Consensus 354 vGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~-~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~ 429 (624)
+||||||++||++|++|+++++++++++|.|+|+||||+++ |+ ++|.+++++|.++|+++++. .+++++++|++++
T Consensus 332 vGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~ 411 (467)
T PRK14329 332 AGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLERNQRDIGKTFE 411 (467)
T ss_pred EeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999995 87 89999999999999999985 5788999999999
Q ss_pred EEEEEEecC--Ceee----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEe
Q 006956 430 IWITEIAAD--GIHL----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478 (624)
Q Consensus 430 VLve~~~~~--g~~~----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~ 478 (624)
||||+..++ +.+. +|..|+++++...+|++++|+|+++.+++|.|+++.
T Consensus 412 vlve~~~~~~~~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 466 (467)
T PRK14329 412 VLIEGVSKRSREQLFGRNSQNKVVVFPKENYKIGDFVNVRITDCTSATLLGEAVG 466 (467)
T ss_pred EEEEecccCCCCeEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecCcEEEEEec
Confidence 999975432 3222 888888865444589999999999999999999874
No 9
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.7e-76 Score=647.84 Aligned_cols=415 Identities=33% Similarity=0.570 Sum_probs=356.4
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhCC--CCEEEEccc
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KPLVVAGCV 134 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~i---r~~k~~~--~~VVVgGc~ 134 (624)
+|||+||||++|++|||.|++.|.+.||++++++++||+|+||||||+..|++++++.+ +++|+.+ .+|||||||
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~Gc~ 81 (437)
T PRK14331 2 KYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVCGCL 81 (437)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEEcch
Confidence 79999999999999999999999999999999999999999999999999999999888 6666644 569999999
Q ss_pred cCcChh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcCCe-eEeeccc--cCCCCC-CCcccCCceEEEEEeCCCCCCCCC
Q 006956 135 PQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRK--KLPALD-LPKVRRNKFVEILPINVGCLGACT 207 (624)
Q Consensus 135 aq~~~e-~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~-~~~~~~~--~~~~~~-lp~~r~~~~~a~I~isrGCp~~Cs 207 (624)
|+.+|+ + ..++ +|.|+|++++..++++++....+.. ....... ..+.++ +|..+.....+||+++||||++|+
T Consensus 82 a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~~~~~~a~v~i~rGC~~~Cs 161 (437)
T PRK14331 82 AQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVRDNKYCAYVTVMRGCDKKCT 161 (437)
T ss_pred hcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccccCCCcEEEEEeccCcCCCCc
Confidence 999995 4 4555 5789999999999999987654432 1111111 111221 233333356789999999999999
Q ss_pred CcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006956 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (624)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~~l~~~~~~~iri~~~~p~ 286 (624)
||.+|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+||+++.+ .+ +..++++++.+|.
T Consensus 162 FC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~-~~--g~~~i~~~~~~p~ 238 (437)
T PRK14331 162 YCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE-ID--GVERIRFTTGHPR 238 (437)
T ss_pred cCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc-CC--CccEEEEeccCcc
Confidence 9999999999999999999999999999999999999999999998753 578999999876 33 5678999988998
Q ss_pred chhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHH
Q 006956 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (624)
Q Consensus 287 ~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~e 366 (624)
.+++++ +..+...+++|+++|+|+||||+++|+.|+|+|+.+++.++++.+++++||+.+.+|||+||||||++||++
T Consensus 239 ~l~~el--l~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~ 316 (437)
T PRK14331 239 DLDEDI--IKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEE 316 (437)
T ss_pred cCCHHH--HHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHH
Confidence 887765 443444445799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecCCeee-
Q 006956 367 TVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHL- 442 (624)
Q Consensus 367 Tl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~g~~~- 442 (624)
|++|+++++++++++|.|+|+||||+++++ ++|++++++|.++|.+++++ .+++++++|++++||||+..+++.+.
T Consensus 317 tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~~~~~g 396 (437)
T PRK14331 317 TLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKALSYEGTVQEVLVEEEKEGNKLIG 396 (437)
T ss_pred HHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCcEEE
Confidence 999999999999999999999999999998 89999999999999999986 57889999999999999754333322
Q ss_pred ---eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEec
Q 006956 443 ---GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 479 (624)
Q Consensus 443 ---~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~ 479 (624)
+|..|+++++....|++++|+|+++++++|.|+++..
T Consensus 397 ~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~ 436 (437)
T PRK14331 397 RTRTNKWVSIEGSQEMLGKIVKVKIIKSNPFSLEGEILEG 436 (437)
T ss_pred ECCCCCEEEECCCCCCCCCEEEEEEEeeecccEEEEEecc
Confidence 8888988754445899999999999999999998764
No 10
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=100.00 E-value=5.8e-76 Score=643.10 Aligned_cols=413 Identities=46% Similarity=0.789 Sum_probs=357.6
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcCh
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~ 139 (624)
+++|+||||+||++|||+|++.|.+.||++++++++||+++||||||+..+++++++.|+++++.+++|||||||||.+|
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~vvv~GC~a~~~~ 80 (420)
T TIGR01578 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIESLMRNGKHVVVAGCMPQAQK 80 (420)
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCCEEEECCcCccCh
Confidence 58999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred h-hhcC-CccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCCCCCcccCCceEEEEEeCCCCCCCCCCcccCccCCC
Q 006956 140 D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217 (624)
Q Consensus 140 e-~~~~-~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGCp~~CsFC~ip~~rG~ 217 (624)
+ +... +.+.++|+.++..+++++.......... .. .....++.|..+..+..++|+|+||||++|+||.+|..+|+
T Consensus 81 e~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~isrGC~~~CsfC~ip~~~G~ 158 (420)
T TIGR01578 81 ESVYDNGSVASVLGVQAIDRLVEVVEETLKKKVHG-RR-EAGTPLSLPKPRKNPLIEIIPINQGCLGNCSYCITKHARGK 158 (420)
T ss_pred HHHHhhCCccEEEcCCCHHHHHHHHHHHhcCCccc-cc-ccccccccccccCCCcEEEEEEccCCCCCCCCCccccCCCC
Confidence 7 4433 5567899999999999887754322110 00 00111122333344578999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
+|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.+.++.+|++.+.+ ++ +..++|+++++|..+....+++.+
T Consensus 159 ~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~-i~--~~~~ir~~~~~p~~~~~~~~~l~~ 235 (420)
T TIGR01578 159 LASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE-IP--GEFRLRVGMMNPKNVLEILDELAN 235 (420)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh-CC--CCcEEEEcCCCCCcccccCHHHHH
Confidence 999999999999999999999999999999999998866679999988865 54 567899999999765444455666
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCC
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~ 377 (624)
++..+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||+++|++|++|+++++++
T Consensus 236 ~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~ 315 (420)
T TIGR01578 236 VYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPE 315 (420)
T ss_pred HHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 66667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecCCeee---eeEEEEEcCC
Q 006956 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHL---GYVQVLVPST 452 (624)
Q Consensus 378 ~v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~g~~~---~y~~V~~~~~ 452 (624)
.+++|+|+|+||||+++|+++|++++++|.++|++++++ .+++++++|++++||||+.+.++.+. +|.+|++..+
T Consensus 316 ~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~~~~~~~v~~~~~ 395 (420)
T TIGR01578 316 KINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHVLVTKEGKGDSLDDEDAYRQVVIRSR 395 (420)
T ss_pred EEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecCCCCeeeeCCCCcEEEEcCC
Confidence 999999999999999999999999999999999999996 57889999999999999754333222 7887888644
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEE
Q 006956 453 GNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 453 ~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
...+|++++|+|+++.+++|.|+++
T Consensus 396 ~~~~g~~~~v~i~~~~~~~l~g~~~ 420 (420)
T TIGR01578 396 TREPGEFAGVEITGAKTAYLIGEII 420 (420)
T ss_pred CCCCCCEEEEEEEeeecceEEEEEC
Confidence 4468999999999999999999864
No 11
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.6e-76 Score=647.03 Aligned_cols=413 Identities=31% Similarity=0.545 Sum_probs=354.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEEc
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~---k~~--~~~VVVgG 132 (624)
.++|||+||||++|++|||.|.+.|.+.||++++++++||+|+||||+|++.|++++++.|+++ |+. +.+|||||
T Consensus 6 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~G 85 (448)
T PRK14333 6 RRSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVAG 85 (448)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4699999999999999999999999999999999999999999999999999999998888765 443 35699999
Q ss_pred cccCcChh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCC-CCCccc-CCceEEEEEeCCCCCCCCC
Q 006956 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACT 207 (624)
Q Consensus 133 c~aq~~~e-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~-~lp~~r-~~~~~a~I~isrGCp~~Cs 207 (624)
||||..++ +. .++ +|.|+|++++..|++++++...|... +.....+.+ ++|.++ .....+||++++|||++|+
T Consensus 86 c~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~a~i~i~~GC~~~Cs 163 (448)
T PRK14333 86 CVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQV--VATEEIHILEDITKPRRDSSITAWVNVIYGCNERCT 163 (448)
T ss_pred ccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCce--eecccccccccccccccCCCeeEEEEhhcCCCCCCC
Confidence 99999997 44 455 68899999999999999887655422 111111111 222221 2235789999999999999
Q ss_pred CcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc---------CCHHHHHHHHHHhCCCCCCceE
Q 006956 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNAIVAELPPDGSTML 278 (624)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~---------~~l~eLL~~l~~~l~~~~~~~i 278 (624)
||.+|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..++
T Consensus 164 FC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~-~~--~~~ri 240 (448)
T PRK14333 164 YCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHD-VE--GIERI 240 (448)
T ss_pred CCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHh-cC--CCeEE
Confidence 9999999999999999999999999999999999999999999987642 278999999976 44 67899
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006956 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (624)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (624)
|+++.+|..+++++ +..+...+.+|+++|||+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||
T Consensus 241 r~~~~~p~~~~~el--i~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPg 318 (448)
T PRK14333 241 RFATSHPRYFTERL--IKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPG 318 (448)
T ss_pred EECCCChhhhhHHH--HHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCC
Confidence 99888998888765 4434444567999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEE
Q 006956 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 435 (624)
Q Consensus 359 ETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~ 435 (624)
||+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|.++|++++++ .+++++++|++++||||+.
T Consensus 319 ET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~ 398 (448)
T PRK14333 319 ETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAERSQRYLGRIEEVLVEGI 398 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999997 89999999999999999985 5788999999999999975
Q ss_pred ecC--Ceee----eeEEEEEcCC-CCCCCCEEEEEEEEEecceEEEEEE
Q 006956 436 AAD--GIHL----GYVQVLVPST-GNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 436 ~~~--g~~~----~y~~V~~~~~-~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
+++ +.+. +|..|++.++ ...+|++++|+|++++.++|.|+++
T Consensus 399 ~~~~~~~~~g~t~~~~~v~~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 447 (448)
T PRK14333 399 NPKDPSQVMGRTRTNRLTFFEGDINQLKGDLVKVKITEVRAFSLTGEPL 447 (448)
T ss_pred ccCCCceEEEECCCCcEEEEcCCCcCCCCCEEEEEEEeeecceEEEEEc
Confidence 432 3222 7888988643 3358999999999999999999975
No 12
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.6e-75 Score=638.82 Aligned_cols=399 Identities=28% Similarity=0.478 Sum_probs=346.3
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHH---HHHHhhC--CCCEEEEc
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSA--KKPLVVAG 132 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~---ir~~k~~--~~~VVVgG 132 (624)
|++|||+||||++|++|||.|++.|.+.||++++++++||+|+||||+|+..|++++++. ++++++. +++|||||
T Consensus 1 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~G 80 (418)
T PRK14336 1 MPGYYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALTG 80 (418)
T ss_pred CCeEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 568999999999999999999999999999999999999999999999999999999854 4555554 35699999
Q ss_pred cccCcChh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCCCCCcccCCceEEEEEeCCCCCCCCCCc
Q 006956 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209 (624)
Q Consensus 133 c~aq~~~e-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGCp~~CsFC 209 (624)
|+||.+++ +. .++ +|.|+|+++...+.+.+... .+|. ..+..++|+|+||||++|+||
T Consensus 81 C~~~~~~~~l~~~~p~vd~v~g~~~~~~~~~~~~~~-----------------~~~~--~~~~~a~i~i~rGC~~~CsFC 141 (418)
T PRK14336 81 CLVGQDISLIRKKFPFVDYIFGPGSMPDWREIPEGF-----------------ILPL--KPPVSANVTIMQGCDNFCTYC 141 (418)
T ss_pred ChhcCCHHHHHhhCCCCcEEECCCCHHHHHHHHhhh-----------------ccCC--CCCeEEEEEeccCCCCCCccC
Confidence 99999986 54 565 57899999877666555311 0111 134678999999999999999
Q ss_pred ccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceEEEeecCCcc
Q 006956 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (624)
Q Consensus 210 ~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~ 287 (624)
++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+++.+ ++ +..++|+.+.+|..
T Consensus 142 ~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 218 (418)
T PRK14336 142 VVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD-IP--GLLRIRFLTSHPKD 218 (418)
T ss_pred CccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh-cC--CccEEEEeccChhh
Confidence 99999999999999999999999999999999999999999998753 469999999976 44 66799999889988
Q ss_pred hhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH
Q 006956 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367 (624)
Q Consensus 288 i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eT 367 (624)
+++++ +..+...+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++||+.+.+|||+||||||+++|++|
T Consensus 219 i~~el--l~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~t 296 (418)
T PRK14336 219 ISQKL--IDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQS 296 (418)
T ss_pred cCHHH--HHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHH
Confidence 87655 3334444567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEEeeeCCCCccc-cCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecCCeee-
Q 006956 368 VNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHL- 442 (624)
Q Consensus 368 l~fl~el~~~~v~i~~ysP~PGTpa~-~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~g~~~- 442 (624)
++|+++++++.+++|.|+|+||||++ .|+ ++|++++++|+++|+++++. .++++.++|++++||||+.. ++...
T Consensus 297 l~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~-~~~~~g 375 (418)
T PRK14336 297 YKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEGLQ-KNKWQG 375 (418)
T ss_pred HHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEcC-CCeEEE
Confidence 99999999999999999999999999 487 89999999999999999996 46789999999999999743 23222
Q ss_pred ---eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEeccc
Q 006956 443 ---GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 481 (624)
Q Consensus 443 ---~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~ 481 (624)
+|..|++.++....|++++|+|++++.++|.|+++...+
T Consensus 376 ~~~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~~~ 417 (418)
T PRK14336 376 RTLGGKLVFLESDLPLEGCLVNVKIFKTSPWSLQAKLVNILE 417 (418)
T ss_pred ECCCCeEEEECCCCCCCCCEEEEEEEEeecccEEEEEeeccC
Confidence 788888875433579999999999999999999987643
No 13
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.5e-75 Score=651.00 Aligned_cols=420 Identities=29% Similarity=0.487 Sum_probs=355.0
Q ss_pred CCCCCCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHH---HHHHHHhhC--CC
Q 006956 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---TLIAKCKSA--KK 126 (624)
Q Consensus 52 ~~~~~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~---~~ir~~k~~--~~ 126 (624)
.+-+++.++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||||+..|+++++ ..++++|+. +.
T Consensus 7 ~~~~~~~~~~~i~T~GC~~N~~dse~~~~~L~~~G~~~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~ 86 (502)
T PRK14326 7 PAAARGARTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGM 86 (502)
T ss_pred cccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCC
Confidence 3446777899999999999999999999999999999999999999999999999999999998 444555554 56
Q ss_pred CEEEEccccCcChh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCCeeEeecc---ccCCCCCCCcccCCceEEEEEeCC
Q 006956 127 PLVVAGCVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHR---KKLPALDLPKVRRNKFVEILPINV 200 (624)
Q Consensus 127 ~VVVgGc~aq~~~e-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~---~~~~~~~lp~~r~~~~~a~I~isr 200 (624)
+|||||||||.+++ +. ..+ +|.|+|+.++..|++++.+...+........ ..+|. .+|..+...+.++|+|||
T Consensus 87 ~VvvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~p~-~~p~~~~~~~~a~v~isr 165 (502)
T PRK14326 87 QIAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPS-TLPARRESAYAAWVSISV 165 (502)
T ss_pred EEEEECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCcccccccccccccc-ccccccCCCceEEEEEcc
Confidence 79999999999996 43 344 6889999999999999988765542211110 11111 123222334678999999
Q ss_pred CCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceE
Q 006956 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 278 (624)
Q Consensus 201 GCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~i 278 (624)
|||++|+||++|.++|+.|+||+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.. ++ +..|+
T Consensus 166 GCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~-i~--~l~~i 242 (502)
T PRK14326 166 GCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGE-ID--GLERV 242 (502)
T ss_pred CCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHh-cC--CccEE
Confidence 99999999999999999999999999999999999999999999999999998743 357888988865 44 56789
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006956 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (624)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (624)
++++.+|..+++++ +..+.+.+.+|++||||+||+|+++|+.|+|+|+.+++.++++++++++||+.+.+|||+||||
T Consensus 243 r~~~~~p~~~~~el--l~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPg 320 (502)
T PRK14326 243 RFTSPHPAEFTDDV--IEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPG 320 (502)
T ss_pred EEeccChhhCCHHH--HHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCC
Confidence 99999998887755 4434444556999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEE
Q 006956 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 435 (624)
Q Consensus 359 ETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~ 435 (624)
||++||++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|+++++. .+.+++++|++++||||+.
T Consensus 321 ET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~~~~~vg~~~~vLve~~ 400 (502)
T PRK14326 321 ETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAVVQERYERLVALQERISLEENRKLVGRTVELLVATG 400 (502)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999998 89999999999999999985 5788999999999999842
Q ss_pred -e-cC---Ceee----eeEEEEEcCC----CCCCCCEEEEEEEEEecceEEEEEE
Q 006956 436 -A-AD---GIHL----GYVQVLVPST----GNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 436 -~-~~---g~~~----~y~~V~~~~~----~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
+ ++ +... +|..|.+... ...+|++++|+|+++.+++|.|+++
T Consensus 401 ~~~~~~~~~~~~g~~~~~~~V~~~~~~~~~~~~~G~~v~v~I~~~~~~~L~g~~~ 455 (502)
T PRK14326 401 EGRKDAATHRMSGRARDGRLVHFTVPEGAPEVRPGDVVTVTVTYAAPHHLIADGG 455 (502)
T ss_pred ccccCCcCceeEEECCCCCEEEEccCCccccCCCCCEEEEEEEecccCcEEEEEe
Confidence 2 12 1111 7777888642 2358999999999999999999987
No 14
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2e-75 Score=643.14 Aligned_cols=413 Identities=28% Similarity=0.464 Sum_probs=348.6
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hhCC--CCEEEEcc
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSAK--KPLVVAGC 133 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~---k~~~--~~VVVgGc 133 (624)
++|||+||||++|++|||.|.+.|.+.||++++. ++||+|+||||||+..|++++++.++++ |+.+ .+||||||
T Consensus 4 ~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~GC 82 (446)
T PRK14337 4 RTFHIITFGCQMNVNDSDWLARALVARGFTEAPE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVGGC 82 (446)
T ss_pred cEEEEEeeCCCCcHHHHHHHHHHHHHCCCEECCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4799999999999999999999999999999885 7899999999999999999999986655 5543 56999999
Q ss_pred ccCcChh-h-hcCC-ccEEEcCCchhHHHHHHHHHhcCCeeEe-e-cc-ccCCCCCC-CcccCCceEEEEEeCCCCCCCC
Q 006956 134 VPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRL-L-HR-KKLPALDL-PKVRRNKFVEILPINVGCLGAC 206 (624)
Q Consensus 134 ~aq~~~e-~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~-~-~~-~~~~~~~l-p~~r~~~~~a~I~isrGCp~~C 206 (624)
+||.+++ + ..++ +|.|+|++++..++++++....+..... + +. ..++.... +.....+..+||+|+||||++|
T Consensus 83 ~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~rGC~~~C 162 (446)
T PRK14337 83 VAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVPASAFVNIMQGCDNFC 162 (446)
T ss_pred ccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCCcEEEEEeccCCCCCC
Confidence 9999875 4 3565 6889999999999999887654332111 1 10 11222111 1222335679999999999999
Q ss_pred CCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---cCCHHHHHHHHHHhCCCCCCceEEEeec
Q 006956 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMT 283 (624)
Q Consensus 207 sFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~---~~~l~eLL~~l~~~l~~~~~~~iri~~~ 283 (624)
+||++|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.||.|. +..+.+||++|.+ ++ +..++|+.+.
T Consensus 163 sFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~~~ 239 (446)
T PRK14337 163 AYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA-LP--GLERLRFTTP 239 (446)
T ss_pred cCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh-cC--CCcEEEEccC
Confidence 9999999999999999999999999999999999999999999998764 2478999999976 44 6678999989
Q ss_pred CCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 006956 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (624)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed 363 (624)
+|..+++++ +..+...+.+|++||||+||+|+++|+.|+|+|+.+++.++++.+++.+|++.+.+|||+||||||++|
T Consensus 240 ~p~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG~PgET~ed 317 (446)
T PRK14337 240 HPKDIAPEV--IEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVGFPGETEED 317 (446)
T ss_pred CcccCCHHH--HHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEECCCCCHHH
Confidence 999888765 333444455799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecC--
Q 006956 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-- 438 (624)
Q Consensus 364 f~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~-- 438 (624)
|++|++|+++++++.+++|.|+|+||||++.|+ ++|++++++|.++|+++++. .+++++++|++++||||+...+
T Consensus 318 ~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~ 397 (446)
T PRK14337 318 FEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERWLQARVGRKTTVLLEGPSRKPG 397 (446)
T ss_pred HHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccccCC
Confidence 999999999999999999999999999999998 89999999999999999996 5788999999999999964322
Q ss_pred ---Ceee----eeEEEEE--cCCCCCCCCEEEEEEEEEecceEEEEEE
Q 006956 439 ---GIHL----GYVQVLV--PSTGNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 439 ---g~~~----~y~~V~~--~~~~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
+.+. +|..|.+ ..+...+|++++|+|+++.+++|.|+++
T Consensus 398 ~~~~~~~g~~~~~~~v~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 445 (446)
T PRK14337 398 EGGDSWQGRDPGGRVVNVPLPAGADLTGRLVPVRITEAKKHSLVGEPA 445 (446)
T ss_pred CCCceEEEECCCCeEEEEecCCCcCCCCCEEEEEEEeeecceEEEEEC
Confidence 1221 6776544 3333358999999999999999999875
No 15
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.1e-74 Score=637.61 Aligned_cols=419 Identities=32% Similarity=0.506 Sum_probs=355.1
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEEc
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~---k~~--~~~VVVgG 132 (624)
|+||+|+||||++||+|||.|++.|.+.||+++++.++||+|+||||||+..+++++++.++++ |+. +.+|||||
T Consensus 3 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvgG 82 (444)
T PRK14325 3 MKKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVGG 82 (444)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999988876544 553 56799999
Q ss_pred cccCcChh-hh-cCC-ccEEEcCCchhHHHHHHHHHh-cCCeeEeeccccCCCCC-CCcccCCceEEEEEeCCCCCCCCC
Q 006956 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACT 207 (624)
Q Consensus 133 c~aq~~~e-~~-~~~-~d~VvG~~~~~~l~ell~~~~-~g~~~~~~~~~~~~~~~-lp~~r~~~~~a~I~isrGCp~~Cs 207 (624)
|||+..|+ +. .++ +|.|+|++++..|++++++.. .|...........+.++ +|..+.....++++|+||||++|+
T Consensus 83 c~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~d~~p~~~~~~~~~~i~isrGCp~~Cs 162 (444)
T PRK14325 83 CVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEKFDHLPEPRAEGPSAFVSIMEGCDKYCT 162 (444)
T ss_pred chhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeecccccccccccccccCCCceEEEEhhhCCCCCCC
Confidence 99999997 33 354 688999999999999998764 44322111111112222 233233456789999999999999
Q ss_pred CcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---cCCHHHHHHHHHHhCCCCCCceEEEeec
Q 006956 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGMT 283 (624)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~-d~---~~~l~eLL~~l~~~l~~~~~~~iri~~~ 283 (624)
||++|..+|+.++||+++|++|++.+++.|+++|+|+|+|++.|+. +. ...+.+|+++|.+ ++ +..++++++.
T Consensus 163 FC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 239 (444)
T PRK14325 163 FCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAA-ID--GIERIRYTTS 239 (444)
T ss_pred ccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHh-cC--CccEEEEccC
Confidence 9999999999999999999999999999999999999999999943 22 2368999999876 44 5678999888
Q ss_pred CCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 006956 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (624)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed 363 (624)
+|..+++++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.++++.||+.+.+|||+||||||+++
T Consensus 240 ~p~~~~~el--l~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed 317 (444)
T PRK14325 240 HPRDFTDDL--IEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDED 317 (444)
T ss_pred CcccCCHHH--HHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHH
Confidence 998887765 443444455799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecC-C
Q 006956 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-G 439 (624)
Q Consensus 364 f~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~-g 439 (624)
|++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|.++|+++++. .+++++++|++++||||+..++ |
T Consensus 318 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~~~ 397 (444)
T PRK14325 318 FEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAFSRSMVGTVQRVLVEGPSRKDG 397 (444)
T ss_pred HHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEeecCCC
Confidence 999999999999999999999999999999998 99999999999999999985 5678899999999999975433 3
Q ss_pred eee----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEeccc
Q 006956 440 IHL----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 481 (624)
Q Consensus 440 ~~~----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~ 481 (624)
.+. +|..|++..+...+|++++|+|+++.+++|.|+++....
T Consensus 398 ~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~~~ 443 (444)
T PRK14325 398 QLIGRTENNRVVNFEGDPDLIGQFVDVKITEAYPNSLRGELVRTED 443 (444)
T ss_pred eEEEECCCCcEEEECCCCCCCCCEEEEEEEEcccccEEEEEeecCC
Confidence 322 888898875433589999999999999999999987643
No 16
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.3e-74 Score=632.76 Aligned_cols=415 Identities=30% Similarity=0.512 Sum_probs=352.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHH---HHHHHHhhCC--CCEEEEcc
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---TLIAKCKSAK--KPLVVAGC 133 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~---~~ir~~k~~~--~~VVVgGc 133 (624)
++|+|+||||++||+|||.|++.|.+.||++++++++||+|+||||||+.+|+++++ ..++++++.+ .+||||||
T Consensus 2 ~~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~GC 81 (439)
T PRK14328 2 KKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCGC 81 (439)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHCcCEECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 579999999999999999999999999999999999999999999999999999998 4455555544 46999999
Q ss_pred ccCc--Chh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCC-eeEeeccccCCCC-CCCcccCCceEEEEEeCCCCCCCC
Q 006956 134 VPQG--SRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (624)
Q Consensus 134 ~aq~--~~e-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~-~~~~~~~~~~~~~-~lp~~r~~~~~a~I~isrGCp~~C 206 (624)
|||. .++ +. .++ +|.|+|++++..+++++.....+. .+........+.+ .+|..+.....+||+|+||||++|
T Consensus 82 ~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~rGC~~~C 161 (439)
T PRK14328 82 MMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDRKSKVKAFVTIMYGCNNFC 161 (439)
T ss_pred hhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccCCCcEEEEEHHhCcCCCC
Confidence 9999 665 43 454 678999999999999998766432 2211111111111 123222345678999999999999
Q ss_pred CCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceEEEeecC
Q 006956 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTN 284 (624)
Q Consensus 207 sFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~ 284 (624)
+||++|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..++|+.+.+
T Consensus 162 sfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~ 238 (439)
T PRK14328 162 TYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNE-ID--GLERIRFMTSH 238 (439)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHh-cC--CCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999997653 468999999875 44 67789998889
Q ss_pred CcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHH
Q 006956 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 364 (624)
Q Consensus 285 p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf 364 (624)
|..+++++ +..+...+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++.+|++.+.+|||+||||||++||
T Consensus 239 P~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~ 316 (439)
T PRK14328 239 PKDLSDDL--IEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDF 316 (439)
T ss_pred hhhcCHHH--HHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHH
Confidence 98887765 4444444557999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecC--C
Q 006956 365 NQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD--G 439 (624)
Q Consensus 365 ~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~--g 439 (624)
++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|.++|.++++. .+++++++|++++||+|+...+ +
T Consensus 317 ~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~~ 396 (439)
T PRK14328 317 EETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEKNKEYEGKIVEVLVEGPSKNDEN 396 (439)
T ss_pred HHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCc
Confidence 99999999999999999999999999999997 89999999999999999986 4678899999999999975332 2
Q ss_pred eee----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEe
Q 006956 440 IHL----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 478 (624)
Q Consensus 440 ~~~----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~ 478 (624)
.+. +|..|++..+...+|++++|+|++++.++|.|++++
T Consensus 397 ~~~g~~~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 439 (439)
T PRK14328 397 KLTGRTRTNKLVNFIGDKELIGKLVNVKITKANSFSLTGEVIE 439 (439)
T ss_pred eEEEECCCCeEEEECCCCCCCCCEEEEEEEeeecceEEEEEeC
Confidence 222 888888874433589999999999999999998763
No 17
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=3.4e-74 Score=632.45 Aligned_cols=413 Identities=30% Similarity=0.502 Sum_probs=353.1
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhc-CceeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhCC--CCEEEEcc
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KPLVVAGC 133 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~-G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~i---r~~k~~~--~~VVVgGc 133 (624)
+|+|+||||++|++|||.|++.|.+. ||.+++++++||+++||||||+.+|++++++.| +++|+.+ .+||||||
T Consensus 1 ~~~i~t~GC~~N~~dse~~~~~l~~~~G~~~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC 80 (438)
T TIGR01574 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGC 80 (438)
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCc
Confidence 58999999999999999999999999 999999999999999999999999999999988 5666553 46999999
Q ss_pred ccCcChh-hh-cCC-ccEEEcCCchhHHHHHHHHHhcCCe-eEeeccccCCCC-CCCcccC-CceEEEEEeCCCCCCCCC
Q 006956 134 VPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPAL-DLPKVRR-NKFVEILPINVGCLGACT 207 (624)
Q Consensus 134 ~aq~~~e-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~-~~~~~~~~~~~~-~lp~~r~-~~~~a~I~isrGCp~~Cs 207 (624)
|||.+++ +. .++ +|.|+|++++..+++++.....+.. .........+.. .+|.... ....+||+++||||++|+
T Consensus 81 ~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~Cs 160 (438)
T TIGR01574 81 MASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEGIYKSFINIMIGCNKFCT 160 (438)
T ss_pred cccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCCceeEEeehhcCCCCCCC
Confidence 9999986 44 345 6789999999999999987654432 111111111111 1233222 346789999999999999
Q ss_pred CcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCcc---CCHHHHHHHHHHhCCCCCCceEEEeec
Q 006956 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMT 283 (624)
Q Consensus 208 FC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~y-g~d~~---~~l~eLL~~l~~~l~~~~~~~iri~~~ 283 (624)
||.+|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.| |.|.. ..|.+||+.+.+ .+ +..|+|++++
T Consensus 161 fC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 237 (438)
T TIGR01574 161 YCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELST-ID--GIERIRFTSS 237 (438)
T ss_pred CCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHh-cC--CceEEEEecC
Confidence 99999999999999999999999999999999999999999999 77642 368999999975 33 6789999989
Q ss_pred CCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 006956 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (624)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed 363 (624)
+|..+++.+ +..+.+.+.+|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||||++|
T Consensus 238 ~p~~l~~el--l~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed 315 (438)
T TIGR01574 238 HPLDFDDDL--IEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVGFPGETEED 315 (438)
T ss_pred CcccCCHHH--HHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHH
Confidence 998887765 444445556799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecCC-
Q 006956 364 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG- 439 (624)
Q Consensus 364 f~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~g- 439 (624)
|++|++|+++++++++++|.|+|+||||+++|+ ++|++++++|.++|.+++++ .+++++++|++++||||+...++
T Consensus 316 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~ 395 (438)
T TIGR01574 316 FEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKKMRKQEGKTFKVLVEGLSRNNP 395 (438)
T ss_pred HHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCC
Confidence 999999999999999999999999999999998 89999999999999999986 56789999999999999754333
Q ss_pred -eee----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEE
Q 006956 440 -IHL----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 440 -~~~----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
.+. +|.+|+++++...+|++++|+|+++.+++|.|+++
T Consensus 396 ~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 438 (438)
T TIGR01574 396 EELAGRTENNFLVNFEGSEDLIGKFVDVKITNVKRMSLRGEIV 438 (438)
T ss_pred ceEEEECCCCCEEEECCCCCCCCCEEEEEEEeeecCcEEEEEC
Confidence 221 88889987544358999999999999999999863
No 18
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.9e-73 Score=629.32 Aligned_cols=421 Identities=30% Similarity=0.527 Sum_probs=360.5
Q ss_pred CCCCCCCCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHH---HHHHhhCC-
Q 006956 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSAK- 125 (624)
Q Consensus 50 ~~~~~~~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~---ir~~k~~~- 125 (624)
+..++.|++++|||+||||+||++|||.|.+.|.+.||++++++++||+|+||||+|++.|++++++. ++++|+.+
T Consensus 12 ~~~~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p 91 (459)
T PRK14338 12 PDRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRP 91 (459)
T ss_pred cccccCCCCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCC
Confidence 55688899999999999999999999999999999999999999999999999999999999999877 45555554
Q ss_pred -CCEEEEccccCcChh-h--hcCC-ccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCCCCCcccCCceEEEEEeCC
Q 006956 126 -KPLVVAGCVPQGSRD-L--KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV 200 (624)
Q Consensus 126 -~~VVVgGc~aq~~~e-~--~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isr 200 (624)
++|||+||+||..++ + ..++ +|.|+|++++..+++++..... ... .|.++....+.....+|++|+|
T Consensus 92 ~~~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~i~I~r 163 (459)
T PRK14338 92 DTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNPIY-----QLD---EPALPVADWSHPPVTVHVPIIY 163 (459)
T ss_pred CCEEEEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhhcc-----ccc---cccccccccCCCceEEEEEccc
Confidence 479999999999986 4 4565 6789999999999988754211 001 1222111112335678999999
Q ss_pred CCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceE
Q 006956 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 278 (624)
Q Consensus 201 GCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~i 278 (624)
|||++|+||.+|..+|+.|++|+++|++|++.+.+.|+++|+|+|++++.||.|.. ..+.+||+.+.+ .+ +..++
T Consensus 164 GC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~-~~--gi~~i 240 (459)
T PRK14338 164 GCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE-IP--GLERL 240 (459)
T ss_pred CCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh-cC--CcceE
Confidence 99999999999999999999999999999999999999999999999999998752 458999999876 33 56689
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006956 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (624)
Q Consensus 279 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (624)
++.+.+|..+++.+ +..+...+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||
T Consensus 241 r~~~~~p~~i~~el--l~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~Pg 318 (459)
T PRK14338 241 RFLTSHPAWMTDRL--IHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPG 318 (459)
T ss_pred EEEecChhhcCHHH--HHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 98888999888765 3333344456999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-C----CCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEE
Q 006956 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K----VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIW 431 (624)
Q Consensus 359 ETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~----vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VL 431 (624)
||++||++|++|+++++++.+++|.|+|+||||+++|+ + +|++++++|.+.|.++++. .++++.++|++++||
T Consensus 319 ET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vl 398 (459)
T PRK14338 319 ETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATERNARFLGQTVEVL 398 (459)
T ss_pred CCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999998 7 9999999999999999986 467889999999999
Q ss_pred EEEEecCCeee----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEecccccc
Q 006956 432 ITEIAADGIHL----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 484 (624)
Q Consensus 432 ve~~~~~g~~~----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~~ 484 (624)
||+.. ++.+. +|..|+++++...+|++++|+|+++.+++|.|+++.+.....
T Consensus 399 ve~~~-~~~~~g~~~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~~~~~~ 454 (459)
T PRK14338 399 VEGEA-KGKWRGRTRGNKLVFFSAPGDWTGKLVPVRITHTSPWSLQGELVASDAAAG 454 (459)
T ss_pred EEEcC-CCeEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecCcEEEEEeeccccch
Confidence 99743 23222 788899975444589999999999999999999998765543
No 19
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=3.2e-73 Score=624.43 Aligned_cols=412 Identities=25% Similarity=0.416 Sum_probs=346.9
Q ss_pred CCCCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEcc
Q 006956 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (624)
Q Consensus 54 ~~~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc 133 (624)
.|...++|||+||||+||++|||.|++.|.+.||++++++++||+|+||||+|++.|++++++.|+++++.+++|||+||
T Consensus 3 ~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~aD~ivinTC~v~~~a~~k~~~~i~~~~~~~~~ivv~GC 82 (440)
T PRK14862 3 KMTAAPKIGFVSLGCPKALVDSERILTQLRAEGYEISPSYDGADLVIVNTCGFIDSAVQESLEAIGEALAENGKVIVTGC 82 (440)
T ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccccchHHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556789999999999999999999999999999999999999999999999999999999999999777777999999
Q ss_pred ccCcChhhhc-CC-ccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCCCCCcccCCceEEEEEeCCCCCCCCCCccc
Q 006956 134 VPQGSRDLKE-LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 211 (624)
Q Consensus 134 ~aq~~~e~~~-~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGCp~~CsFC~i 211 (624)
+|+...++.+ ++ +|.|+|+.++..+++++........... .....+... ......++||++|||||++|+||++
T Consensus 83 ~a~~~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~a~v~isrGCp~~CsFC~i 158 (440)
T PRK14862 83 LGAKEDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPHDPF-VDLVPPQGV---KLTPRHYAYLKISEGCNHRCTFCII 158 (440)
T ss_pred cccCHHHHHhhCCCceEEECCCCHHHHHHHHHHhhccccccc-cccCcchhc---ccCCCcEEEEEeccCCCCCCccCCc
Confidence 9995323543 44 5679999999999998876532111000 000000000 0123467899999999999999999
Q ss_pred CccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc------------CCHHHHHHHHHHhCCCCCCceEE
Q 006956 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------------VNLPILLNAIVAELPPDGSTMLR 279 (624)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~------------~~l~eLL~~l~~~l~~~~~~~ir 279 (624)
|.++|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|+++|.+. +. |+|
T Consensus 159 p~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~----~~-~~r 233 (440)
T PRK14862 159 PSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGEL----GA-WVR 233 (440)
T ss_pred ccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHHHHHHHHHHhc----CC-EEE
Confidence 999999999999999999999999999999999999999987631 3688898888763 34 899
Q ss_pred EeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Q 006956 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (624)
Q Consensus 280 i~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE 359 (624)
+.+++|..+.++ +.++++.+++++++|||+||+|+++|+.|+|+++.+++.++++.+++..|++.+.++||+|||||
T Consensus 234 ~~~~~p~~~~de---ll~~m~~g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgE 310 (440)
T PRK14862 234 LHYVYPYPHVDE---VIPLMAEGKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGE 310 (440)
T ss_pred EecCCCCcCCHH---HHHHHhcCCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCC
Confidence 998888766543 45555556666799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEe
Q 006956 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIA 436 (624)
Q Consensus 360 Teedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~ 436 (624)
|+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|.++++. .+++++++|++++||||+..
T Consensus 311 T~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlie~~~ 390 (440)
T PRK14862 311 TEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAARLQRKVGRTLQVLIDEVD 390 (440)
T ss_pred CHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEcC
Confidence 9999999999999999999999999999999999998 89999999999999999886 57789999999999999755
Q ss_pred cCCe---eeeeEE-----EEEcCCCC-CCCCEEEEEEEEEecceEEEEEE
Q 006956 437 ADGI---HLGYVQ-----VLVPSTGN-MLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 437 ~~g~---~~~y~~-----V~~~~~~~-~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
+++. ..+|.+ |++..... .+|++++|+|+++.+++|.|+++
T Consensus 391 ~~~~~Gr~~~~~~~v~~~v~~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 440 (440)
T PRK14862 391 EEGAIGRSKADAPEIDGVVYLNGETGLKVGDIVRVKITDADEYDLWGEVV 440 (440)
T ss_pred CCCeEEECcccCccCCCceeccCCCCCCCCCEEEEEEEEeeCCcEEEEEC
Confidence 4442 126665 77753322 47999999999999999999864
No 20
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=100.00 E-value=3.3e-73 Score=623.53 Aligned_cols=408 Identities=36% Similarity=0.615 Sum_probs=351.3
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCC---CEEEEccccC
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK---PLVVAGCVPQ 136 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~---~VVVgGc~aq 136 (624)
+|||+||||++|++|||.|.+.|.+.||++++++++||+|+||||||+..++++++++++++++.++ +||||||||+
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a~ 80 (429)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLAQ 80 (429)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECcccc
Confidence 6899999999999999999999999999999999999999999999999999999999999988776 8999999999
Q ss_pred cChhh--hcC-CccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCC-CCCccc-CCceEEEEEeCCCCCCCCCCccc
Q 006956 137 GSRDL--KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACTYCKT 211 (624)
Q Consensus 137 ~~~e~--~~~-~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~-~lp~~r-~~~~~a~I~isrGCp~~CsFC~i 211 (624)
..|+. ..+ ++|.|+|++++..|++++++.. +.....+.. +.+++ .+|..+ .....++|+++||||++|+||.+
T Consensus 81 ~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~i~~srGC~~~CsfC~~ 158 (429)
T TIGR00089 81 REGEELLKRIPEVDIVLGPQNKERIPEAIESAE-QEKQVVFNI-SKDVYEELPRPRSFGKTRAFLKIQEGCDKFCTYCIV 158 (429)
T ss_pred cCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh-cCCceeccc-cccchhcccccccCCCeEEEEEHHhCcCCCCCcCce
Confidence 99963 344 4788999999999999998865 322222211 11111 123322 23467899999999999999999
Q ss_pred CccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchh
Q 006956 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (624)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~ 289 (624)
|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|+. ..+.+||+++.+ ++ +..|+++++.+|..++
T Consensus 159 ~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--g~~~i~~~~~~p~~i~ 235 (429)
T TIGR00089 159 PYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSK-ID--GIERIRFGSSHPDDVT 235 (429)
T ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhc-CC--CCCEEEECCCChhhcC
Confidence 999999999999999999999999999999999999999987753 468999999876 44 5789999988998777
Q ss_pred HHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHH
Q 006956 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 369 (624)
Q Consensus 290 ~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~ 369 (624)
+++ +..+.+.+.+|+++++|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.+|||+||||||+++|++|++
T Consensus 236 ~el--l~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~ 313 (429)
T TIGR00089 236 DDL--IELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLD 313 (429)
T ss_pred HHH--HHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHH
Confidence 655 333333444799999999999999999999999999999999999999778999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEe--cCCeee--
Q 006956 370 LIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIA--ADGIHL-- 442 (624)
Q Consensus 370 fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~--~~g~~~-- 442 (624)
|+++++++.+++|+|+|+||||+++|+ ++|++++++|.++|.++++. .+++++++|++++||||+.+ .+|...
T Consensus 314 ~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~~g~ 393 (429)
T TIGR00089 314 LVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTGR 393 (429)
T ss_pred HHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCCeEEEE
Confidence 999999999999999999999999998 89999999999999999986 46788999999999999732 223322
Q ss_pred --eeEEEEEcCC--CCCCCCEEEEEEEEEecceEEE
Q 006956 443 --GYVQVLVPST--GNMLGTSALVKITSVGRWSVFG 474 (624)
Q Consensus 443 --~y~~V~~~~~--~~~~G~~v~V~I~~~~~~~l~g 474 (624)
+|..|+++.+ ...+|++++|+|+++..++|.|
T Consensus 394 ~~~~~~v~~~~~~~~~~~g~~~~v~i~~~~~~~l~g 429 (429)
T TIGR00089 394 TENYKPVVFEGGVGKNLIGKFVKVKITEAAEYSLIG 429 (429)
T ss_pred CCCCeEEEECCCCCcCCCCCEEEEEEEecccceeEC
Confidence 8889998753 2358999999999999999876
No 21
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.7e-73 Score=618.04 Aligned_cols=400 Identities=28% Similarity=0.489 Sum_probs=342.5
Q ss_pred cChhHHHHHHHHHH-hcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhh---CCCCEEEEccccCcChh-h-hc
Q 006956 70 HNQSDSEYMAGQLS-AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS---AKKPLVVAGCVPQGSRD-L-KE 143 (624)
Q Consensus 70 ~N~~Dse~~~~~L~-~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~---~~~~VVVgGc~aq~~~e-~-~~ 143 (624)
||++|||.|++.|. +.||++++++++||+|+||||||++.|++++++.|+++++ ++++|||+||+||.+++ + +.
T Consensus 1 ~N~~dse~~~~~l~~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~~~~~~~~~~ 80 (420)
T PRK14339 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTASHLGEEIIKR 80 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEECCCcccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCccccCCHHHHhh
Confidence 79999999999999 5899999999999999999999999999999999998864 35679999999999885 4 36
Q ss_pred CC-ccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCCCCCcccCCceEEEEEeCCCCCCCCCCcccCccCCCcccCC
Q 006956 144 LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222 (624)
Q Consensus 144 ~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~ 222 (624)
++ +|.|+|+.++..+++++..... ......... ..+..+..+.....++|+||||||++|+||++|..+|+.+++|
T Consensus 81 ~~~vd~v~g~~~~~~i~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~ 157 (420)
T PRK14339 81 APYVDFVLGARNVSKISQVIHTPKA-VEVDIDYDE--STYAFADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIP 157 (420)
T ss_pred CCCCcEEECCCCHHHHHHHHHhhcc-cceeccccc--cccccccccCCCeEEEEEecCCCCCCCCcCCcccccCCCCCCC
Confidence 65 5789999999999998865311 111100000 0111111223456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-----CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 223 ~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-----~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
+++|++|++.+++.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..|+|+++++|..+++++ +..
T Consensus 158 ~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~s~~p~~~~~el--l~~ 232 (420)
T PRK14339 158 MDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSE-IE--GLERIRFTSPHPLHMDDKF--LEE 232 (420)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhc-CC--CccEEEECCCChhhcCHHH--HHH
Confidence 9999999999999999999999999999998741 358999999875 44 6789999989998887765 444
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCC
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~ 377 (624)
+.+.+.+|+++|||+||+|+++|+.|+|+|+.+++.++++++++.+|++.+.+|||+||||||++||++|++|+++++++
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~ 312 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFE 312 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 44555679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecCCeee----eeEEEEEc
Q 006956 378 QVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHL----GYVQVLVP 450 (624)
Q Consensus 378 ~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~g~~~----~y~~V~~~ 450 (624)
.+++|.|+|+||||+++|+ ++|++++++|.++|.++++. .+.+++++|++++||||+...+|.+. +|..|+++
T Consensus 313 ~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~~~g~t~~~~~v~~~ 392 (420)
T PRK14339 313 QIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEIAKKEVGKTHVVLFEELRANGGVAGRSDNNKLVQVK 392 (420)
T ss_pred EEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCeEEEECCCCeEEEEC
Confidence 9999999999999999998 99999999999999999995 57889999999999999754344322 88889887
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEE
Q 006956 451 STGNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 451 ~~~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
.+...+|++++|+|+++.+++|.|+++
T Consensus 393 ~~~~~~G~~~~v~i~~~~~~~l~g~~~ 419 (420)
T PRK14339 393 GSEELLGEFVKVKITNASRGVLYGEIV 419 (420)
T ss_pred CCCCCCCCEEEEEEEeeecCcEEEEEC
Confidence 544358999999999999999999875
No 22
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=100.00 E-value=9.8e-73 Score=619.79 Aligned_cols=408 Identities=26% Similarity=0.462 Sum_probs=345.0
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcCh
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~ 139 (624)
+|+|+||||+|||+|||.|++.|.+.||+++++.++||+|+||||+||..++++++++++++++++++||||||||+..|
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a~~~p 80 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLVQRYK 80 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCccccch
Confidence 58999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred h-h-hcCC-ccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCCCCCccc-CCceEEEEEeCCCCCCCCCCcccCccC
Q 006956 140 D-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHAR 215 (624)
Q Consensus 140 e-~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r-~~~~~a~I~isrGCp~~CsFC~ip~~r 215 (624)
+ + ..++ +|.|+|+..+..+.+.+............. ..+....|... ....+++|++|||||++|+||.+|..+
T Consensus 81 ee~~~~~~~vd~v~g~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~srGC~~~CsfC~~~~~~ 158 (430)
T TIGR01125 81 EELKEEIPEVHAITGSGDVENILNAIESREPGDKIPFKS--EIEMGEVPRILLTPRHYAYLKVAEGCNRRCAFCIIPSIR 158 (430)
T ss_pred HHHHhhCCCCcEEECCCCHHHHHHHHHHHhccCCccccc--ccccccccccccCCCeEEEEEEccCCCCCCCcCCeeccc
Confidence 7 3 3454 678999988777776665543221110000 00000012111 224568999999999999999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006956 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (624)
Q Consensus 216 G~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 293 (624)
|++|+||+++|++|++.+++.|+++|+|+|+|++.||.|. ...+.+|+++|.+ ++ +..|+|+.+++|..+++++
T Consensus 159 G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~-~~--~i~~~r~~~~~p~~~~~el- 234 (430)
T TIGR01125 159 GKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK-VG--GIYWIRMHYLYPDELTDDV- 234 (430)
T ss_pred CCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh-cC--CccEEEEccCCcccCCHHH-
Confidence 9999999999999999999999999999999999998764 2579999999976 33 4679999989999887755
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 373 (624)
+..+.+.+++|.++|+|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.++||+||||||+++|++|++|+++
T Consensus 235 -l~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~ 313 (430)
T TIGR01125 235 -IDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEE 313 (430)
T ss_pred -HHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHh
Confidence 3333344457899999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecC--Ceee----ee
Q 006956 374 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD--GIHL----GY 444 (624)
Q Consensus 374 l~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~--g~~~----~y 444 (624)
++++.+++|+|+|+|||++++|+ ++|.+++++|.++|.++++. .+++++++|++++||||+.+++ +... +|
T Consensus 314 ~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~~~~~g~~~~~ 393 (430)
T TIGR01125 314 GQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKKNQEFVGKKIEVLIDGYEPETNLLLIGRTYGQ 393 (430)
T ss_pred cCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCCcEEEECccC
Confidence 99999999999999999999998 89999999999999999885 5678899999999999975432 2221 77
Q ss_pred EE-----EEEcCC--CCCCCCEEEEEEEEEecceEEE
Q 006956 445 VQ-----VLVPST--GNMLGTSALVKITSVGRWSVFG 474 (624)
Q Consensus 445 ~~-----V~~~~~--~~~~G~~v~V~I~~~~~~~l~g 474 (624)
.+ |+++++ ...+|++++|+|+++.+++|.|
T Consensus 394 ~~~~~~~v~~~~~~~~~~~g~~~~v~i~~~~~~~l~g 430 (430)
T TIGR01125 394 APEVDGVVYVNGAKLNVKIGDILRVVITGTDEYDLWG 430 (430)
T ss_pred CcccCceEEEcCCcccCCCCCEEEEEEEEcccCeeeC
Confidence 76 777643 2248999999999999999976
No 23
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-71 Score=611.97 Aligned_cols=413 Identities=28% Similarity=0.463 Sum_probs=348.4
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCC----CCEEEEcccc
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVP 135 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~----~~VVVgGc~a 135 (624)
+|||+||||++|++|||.|++.|.+.||++++++++||+|+||||+|++.|++++++.++++++.+ .+|+|+||+|
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~v~v~GC~a 81 (440)
T PRK14334 2 KAHIITYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKAQRPLVVGMMGCLA 81 (440)
T ss_pred eEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhCcCCCcEEEEEcchh
Confidence 799999999999999999999999999999999999999999999999999999999999887543 2488999999
Q ss_pred CcCh-h-hhcC-CccEEEcCCchhHHHHHHHHHhcCCeeEeeccccCCCCCCCcccCCceEEEEEeCCCCCCCCCCcccC
Q 006956 136 QGSR-D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212 (624)
Q Consensus 136 q~~~-e-~~~~-~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGCp~~CsFC~ip 212 (624)
|.++ + +... .+|.|+|++++..+++++..... ............ .+|.....+..+||+|++|||++|+||.+|
T Consensus 82 ~~~~~~~l~~~~~vd~v~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~l~isrGC~~~CsfC~~p 158 (440)
T PRK14334 82 QLEEGQQMARKFGVDVLLGPGALTDIGKALEANER--FWGLQFKDELHD-HIPPPPQGKLSAHLTIMRGCNHHCTYCIVP 158 (440)
T ss_pred ccCChhHHhcCCCCCEEECCCCHHHHHHHHHhhcc--cccccccccccc-ccccccCCCeEEEEEeccCCCCCCcCCCcc
Confidence 9984 3 4444 56789999999988888754311 000000011100 122223446789999999999999999999
Q ss_pred ccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH
Q 006956 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290 (624)
Q Consensus 213 ~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~ 290 (624)
..+|+.+++++++|++|++.+.+.|+++|+|+|+|++.||.+.. .++.+|++.+.+ + +..++++.+.+|..+++
T Consensus 159 ~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~-~---~i~~ir~~~~~p~~i~~ 234 (440)
T PRK14334 159 TTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGA-S---GIPRVKFTTSHPMNFTD 234 (440)
T ss_pred hhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHh-c---CCcEEEEccCCcccCCH
Confidence 99999999999999999999999999999999999999987643 468999998865 3 45689998889988887
Q ss_pred HHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Q 006956 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370 (624)
Q Consensus 291 ~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~f 370 (624)
++ +..+.+.+.+|+++|||+||+|+++|+.|+|+|+.+++.++++.++++.|++.+.+|||+||||||++||++|++|
T Consensus 235 el--l~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~ 312 (440)
T PRK14334 235 DV--IAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSL 312 (440)
T ss_pred HH--HHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHH
Confidence 65 4444444556999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecC-Ceee----
Q 006956 371 IKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-GIHL---- 442 (624)
Q Consensus 371 l~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~-g~~~---- 442 (624)
+.+++++.+++|.|+|+||||+++++ ++|++++++|.++|+++++. .+++++++|++++||||+.+++ +.+.
T Consensus 313 i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~g~t~ 392 (440)
T PRK14334 313 YDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRRNARWVGRTQEVLVRGDAKDAGFLEGHTR 392 (440)
T ss_pred HHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCeEEEECC
Confidence 99999999999999999999999987 89999999999999999996 5788999999999999975433 3222
Q ss_pred eeEEEEEcCCCC-CCCCEEEEEEEEEecceEEEEEEecccc
Q 006956 443 GYVQVLVPSTGN-MLGTSALVKITSVGRWSVFGEVIKILNQ 482 (624)
Q Consensus 443 ~y~~V~~~~~~~-~~G~~v~V~I~~~~~~~l~g~~v~~~~~ 482 (624)
+|.+|.++.+.. ..| +++|+|+++.+++|.|+++...-+
T Consensus 393 ~~~~v~~~~~~~~~~g-~~~v~i~~~~~~~l~g~~~~~~~~ 432 (440)
T PRK14334 393 GNHPVLVPASQAPGPG-LYQVRIKQATPHMLYGEVVGAEAP 432 (440)
T ss_pred CCcEEEEcCCCcccCc-EEEEEEEEccCceEEEEEecCCCc
Confidence 888898864322 346 999999999999999998876443
No 24
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=100.00 E-value=8.3e-72 Score=609.84 Aligned_cols=395 Identities=32% Similarity=0.561 Sum_probs=338.0
Q ss_pred EEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccccCcChh
Q 006956 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRD 140 (624)
Q Consensus 63 i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~aq~~~e 140 (624)
|+||||++|++|||.|++.|.+.||+.++++++||+|+||||||+..++++++++++++|+.+ .+||||||||+..|+
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~~~e 80 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQSNPK 80 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccccCHH
Confidence 589999999999999999999999999999999999999999999999999999999998877 569999999999997
Q ss_pred -hhcCC-ccEEEcCCchhHHHHHHHHHhcCCeeEee-----ccccCCCCCCCcccCCceEEEEEeCCCCCCCCCCcccCc
Q 006956 141 -LKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLL-----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213 (624)
Q Consensus 141 -~~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~-----~~~~~~~~~lp~~r~~~~~a~I~isrGCp~~CsFC~ip~ 213 (624)
+..++ +|.|+|++++..|+++++....+...... ....+|.+++... .....++|+++||||++|+||.+|.
T Consensus 81 e~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~i~isrGCp~~CsfC~~~~ 159 (414)
T TIGR01579 81 ELADLKDVDLVLGNKEKDKINKLLSLGLKTSFYRVKNKNFSREKGVPEYEEVAF-EGHTRAFIKVQDGCNFFCSYCIIPF 159 (414)
T ss_pred HHhcCCCCcEEECCCCHHHHHHHHHHHhcccCcccccccccccccccccccccc-CCCeEEEEEeccCcCCCCCCCceee
Confidence 44554 57899999999999999865433221111 1111222222111 2245789999999999999999999
Q ss_pred cCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHH
Q 006956 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (624)
Q Consensus 214 ~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~ 291 (624)
.+|++|+||+++|++|++.+.+.|+++|+|+|+|++.|+.|. ...+.+|++++.+ ++ +..|+|+++++|..++++
T Consensus 160 ~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~~~~e 236 (414)
T TIGR01579 160 ARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ-IP--GIKRIRLSSIDPEDIDEE 236 (414)
T ss_pred ecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc-CC--CCcEEEEeCCChhhCCHH
Confidence 999999999999999999999999999999999999998774 3578999999975 44 678999999999888765
Q ss_pred HHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Q 006956 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (624)
Q Consensus 292 l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl 371 (624)
+ +..+.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||+++|++|++|+
T Consensus 237 l--l~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 237 L--LEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred H--HHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 5 33333455679999999999999999999999999999999999999777999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCCcEEEEEEEEEecCCee----eee
Q 006956 372 KEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH----LGY 444 (624)
Q Consensus 372 ~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG~~~~VLve~~~~~g~~----~~y 444 (624)
++++++.+++|+|+|+||||+++|+ ++|..++++|.++|+++++. .+++++++|++++||||+.. ++.. .+|
T Consensus 315 ~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~-~~~~~g~~~~~ 393 (414)
T TIGR01579 315 KEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEFLKKNIGKELEVLVEKEK-AGVLTGYSEYY 393 (414)
T ss_pred HhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCC-CCeeEEECCCC
Confidence 9999999999999999999999998 89999999999999999986 57889999999999999743 3322 288
Q ss_pred EEEEEcCC-CCCCCCEEEEEE
Q 006956 445 VQVLVPST-GNMLGTSALVKI 464 (624)
Q Consensus 445 ~~V~~~~~-~~~~G~~v~V~I 464 (624)
..|++..+ ....|++++|+|
T Consensus 394 ~~v~~~~~~~~~~g~~~~v~i 414 (414)
T TIGR01579 394 LKVKVESDKGVAAGELISVRI 414 (414)
T ss_pred cEEEeCCCCccCCCCEEEEEC
Confidence 88998744 235899999986
No 25
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-57 Score=469.59 Aligned_cols=420 Identities=25% Similarity=0.423 Sum_probs=354.1
Q ss_pred CCCCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhC--------C
Q 006956 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--------K 125 (624)
Q Consensus 54 ~~~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--------~ 125 (624)
..+..+|||++||||+||..|+|.+..+|++.||-.++.+++||+|+++||++++.||+++++.++.+|.. .
T Consensus 68 l~g~gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~~~~~e~Advill~TCsiRe~AEq~iwnrL~~~ra~k~~~~~~rp 147 (552)
T KOG2492|consen 68 LLGNGRKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRLKLLRALKVNRPTSRP 147 (552)
T ss_pred hccCCcEEEEEEeeeeeccchHHHHHHHHHhcCccccCCcccCcEEEEEEeeccccHHHHHHHHHHHHHHhhccCccCCC
Confidence 34456789999999999999999999999999999999999999999999999999999999988766532 1
Q ss_pred CCEEEEccccCcChh-h-h-cCCccEEEcCCchhHHHHHHHHHhcCCee---EeeccccCCCCCCCc-ccCCceEEEEEe
Q 006956 126 KPLVVAGCVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEV---RLLHRKKLPALDLPK-VRRNKFVEILPI 198 (624)
Q Consensus 126 ~~VVVgGc~aq~~~e-~-~-~~~~d~VvG~~~~~~l~ell~~~~~g~~~---~~~~~~~~~~~~lp~-~r~~~~~a~I~i 198 (624)
.+|.|-||||++..+ + . +--+|.|-|++.+..||.+|.-...|..- .+.-...+.+.. |. .......|||.|
T Consensus 148 l~v~vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv~-pvr~~~~s~tAFvSi 226 (552)
T KOG2492|consen 148 LRVGVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYADVQ-PVRVSSSSTTAFVSI 226 (552)
T ss_pred ceEEeehhhHHHHHHHHhhhhhceeeeeCchhhhhhHHHHHHHhccCCceeEEEeccchhcccc-eeeccCccchhHHHH
Confidence 257888999999875 3 2 33467899999999999998876665432 111112222221 21 124567899999
Q ss_pred CCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-----------------------
Q 006956 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----------------------- 255 (624)
Q Consensus 199 srGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~----------------------- 255 (624)
.|||++-|+||++|+.||+.|+||++.|++|++.|.++|+||+.|.|||+++|..+.
T Consensus 227 MRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K 306 (552)
T KOG2492|consen 227 MRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPK 306 (552)
T ss_pred HhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeeccc
Confidence 999999999999999999999999999999999999999999999999999996531
Q ss_pred --cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHH
Q 006956 256 --GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333 (624)
Q Consensus 256 --~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~ 333 (624)
+..|+.||+.+....| ..++||.+.||.++.+++.++ +...+.+|..+|+|.||+|.++|+.|.|+|+.+.|.
T Consensus 307 ~gGl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdevl~l--i~~rdnickqihlPAqSgds~vLE~mrRgysreayl 381 (552)
T KOG2492|consen 307 QGGLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEVLEL--IRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYL 381 (552)
T ss_pred CCCccHHHHHHHHhhhCc---ceEEEecCCCCCCChHHHHHH--HHhCcchhheeeccccCCchHHHHHHHccCChHhhh
Confidence 1369999999998764 578888888998888776333 445678899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC-C-CCCHHHHHHHHHHHH
Q 006956 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K-KVPSAVVKKRSRELT 411 (624)
Q Consensus 334 e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~-~-~vp~~~~~~R~~~L~ 411 (624)
+.+..+++.+||+.+..|||.||-|||++|+++|+.++++.+.+.+..|.|+-+.+|.++.- . ++|++++.+|..+|.
T Consensus 382 ~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~Li 461 (552)
T KOG2492|consen 382 ELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFELI 461 (552)
T ss_pred hHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999854 4 899999999999999
Q ss_pred HHHHH--hCccccCCCcEEEEEEEEEecCCee--e----eeEEEEEcC--------C----CCCCCCEEEEEEEEEecce
Q 006956 412 SVFEA--FTPYLGMEGRVERIWITEIAADGIH--L----GYVQVLVPS--------T----GNMLGTSALVKITSVGRWS 471 (624)
Q Consensus 412 ~l~~~--~~~~~~~vG~~~~VLve~~~~~g~~--~----~y~~V~~~~--------~----~~~~G~~v~V~I~~~~~~~ 471 (624)
.+|+. ...++.++|.++-||+|++++.... . .|..|.|+. + ...+|+++.|+|+.+....
T Consensus 462 ~~Fre~A~~~~d~lvgc~Qlvlveg~sKrs~t~~~gr~d~~~kv~f~~a~~~~~~~~~~r~~~~igd~~~v~i~~a~~~~ 541 (552)
T KOG2492|consen 462 TFFREEAIKFNDGLVGCTQLVLVEGKSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAGPGDYVLVKITDSNSQT 541 (552)
T ss_pred HHHHHHHHHHhccCccccceeeeechhhhhHHHHhcccCCCeEEEechHhhcCCCCCCceeccCcccceeeeeehhhhhh
Confidence 99985 5688999999999999998642211 1 677777751 1 1357999999999999999
Q ss_pred EEEEEEec
Q 006956 472 VFGEVIKI 479 (624)
Q Consensus 472 l~g~~v~~ 479 (624)
|+|..+..
T Consensus 542 l~g~~lai 549 (552)
T KOG2492|consen 542 LKGQLLGQ 549 (552)
T ss_pred hhcchhhc
Confidence 99887654
No 26
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=100.00 E-value=2.7e-35 Score=328.90 Aligned_cols=306 Identities=19% Similarity=0.239 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHhcC-ceee--CC---------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEEc
Q 006956 73 SDSEYMAGQLSAFG-YALT--DN---------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAG 132 (624)
Q Consensus 73 ~Dse~~~~~L~~~G-~~~~--~~---------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VVVgG 132 (624)
.-..++++.|++.| +++. +. ...+|+|+|++.| +....++++++.+|+. +.+||+||
T Consensus 23 lgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~t---~~~~~a~~~~~~~k~~~P~~~iV~GG 99 (497)
T TIGR02026 23 LWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAIT---PAIYIACETLKFARERLPNAIIVLGG 99 (497)
T ss_pred HHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecCc---ccHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 35688999999999 4542 21 1368999994332 2334567777777765 67899999
Q ss_pred cccCcChh--hhcC-CccE-EEcCCchhHHHHHHHHHhcCC---ee---E---------eecc---ccCCCCC-CC-c--
Q 006956 133 CVPQGSRD--LKEL-EGVS-IVGVQQIDRVVEVVEETLKGH---EV---R---------LLHR---KKLPALD-LP-K-- 186 (624)
Q Consensus 133 c~aq~~~e--~~~~-~~d~-VvG~~~~~~l~ell~~~~~g~---~~---~---------~~~~---~~~~~~~-lp-~-- 186 (624)
+||+..|+ +... ..|+ |+|+++ ..++++++....|. .. + .... ..+.+++ +| .
T Consensus 100 ~h~t~~~~~~l~~~p~vD~Vv~GEGE-~~~~~Ll~~l~~g~~~~~~~~I~Gi~y~~~g~i~~~~~~~~i~dLd~~~P~~~ 178 (497)
T TIGR02026 100 IHPTFMFHQVLTEAPWIDFIVRGEGE-ETVVKLIAALENHNFAEDRNKVDGIAFLRDQEIVETLAAPMIQDLDVYRPDWE 178 (497)
T ss_pred CCcCcCHHHHHhcCCCccEEEeCCcH-HHHHHHHHHHHcCCCCCchhhCCceEEEeCCEEEeCCCCCCccccccCCCCcc
Confidence 99999886 3344 3686 556665 78999998876654 11 0 0000 0111121 11 1
Q ss_pred ------ccC---CceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcc
Q 006956 187 ------VRR---NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIG 256 (624)
Q Consensus 187 ------~r~---~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~ 256 (624)
+.. ....+.+++|||||++|+||..+...+++|.++++.|++||+.+.+ .|++.|.|.|++++...
T Consensus 179 l~~~~~y~~~~~~~~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~---- 254 (497)
T TIGR02026 179 LVDWKKYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINR---- 254 (497)
T ss_pred cCchhhcccccCCCceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCH----
Confidence 000 1224568999999999999999887788999999999999999976 69999999998876532
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHH
Q 006956 257 VNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335 (624)
Q Consensus 257 ~~l~eLL~~l~~~l~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~ 335 (624)
..+.+++++|.+.-+ ..+++. +++++.+... +++.++++.++ |.++.+|+||+|+++|+.|+|+++.+++.++
T Consensus 255 ~~~~~l~~~l~~~~~----l~i~w~~~~r~~~i~~d-~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~K~~t~~~~~~a 328 (497)
T TIGR02026 255 KKFQEFCEEIIARNP----ISVTWGINTRVTDIVRD-ADILHLYRRAG-LVHISLGTEAAAQATLDHFRKGTTTSTNKEA 328 (497)
T ss_pred HHHHHHHHHHHhcCC----CCeEEEEecccccccCC-HHHHHHHHHhC-CcEEEEccccCCHHHHHHhcCCCCHHHHHHH
Confidence 246788888876411 122222 3455555221 23445555555 8999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc
Q 006956 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 336 I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~ 394 (624)
++.++++ ||.+.++||+|+||||.+++++|++++.+++++.++++.|+|+||||+++
T Consensus 329 i~~l~~~--Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~ 385 (497)
T TIGR02026 329 IRLLRQH--NILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFG 385 (497)
T ss_pred HHHHHHC--CCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999975
No 27
>PRK00955 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=319.96 Aligned_cols=200 Identities=21% Similarity=0.324 Sum_probs=161.1
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCCc-ccCCHHHHHHHHHHHHHC-CCcEEE--EeecCCCCCCCCc------------
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIAD-GVKEVW--LSSEDTGAYGRDI------------ 255 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~~-Rsr~~e~Iv~EI~~L~~~-GvkeI~--l~g~d~~~yg~d~------------ 255 (624)
..++|.|+|||+++|+||++|..+|+. +|||+++|++|++.+.+. |+++++ +.|++.+.||.+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 457899999999999999999999985 999999999999999987 899875 6688899998420
Q ss_pred --------------cCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchhHHH--HHHHHHHhCCCcceeccccCCCCCHH
Q 006956 256 --------------GVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHL--KEIAEVLRHPCVYSFLHVPVQSGSDA 318 (624)
Q Consensus 256 --------------~~~l~eLL~~l~~~l~~~~~~~iri~~-~~p~~i~~~l--~el~~l~~~~~v~~~l~IGlQSgsd~ 318 (624)
...+.+||++|.+ ++ +..|+++++ ++.+.+.... +.+.++..+ .++.+||||+||+|++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~-l~--gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~-~vsg~L~IapESgSd~ 447 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRK-LP--GVKKVFIRSGIRYDYLLHDKNDEFFEELCEH-HVSGQLKVAPEHISDR 447 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhc-cC--CceEEEeecceeccccccCCcHHHHHHHHHH-hcCCCceeCcCCCChH
Confidence 1258899999975 55 777877776 3544321100 013333333 3467999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhCCC----CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc
Q 006956 319 VLSAMNREYTLSDFRTVVDTLIELVPG----MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 319 vLk~M~R~~t~e~~~e~I~~lr~~~pg----i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~ 394 (624)
+|+.|+|+ +.+.+.+.++.+++..+. ..+.++||+||||||++||++|++|+++++++.+++|.|+|+|||+++.
T Consensus 448 VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~ 526 (620)
T PRK00955 448 VLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTT 526 (620)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhh
Confidence 99999998 667777776666665444 3599999999999999999999999999999999999999999999998
Q ss_pred CC
Q 006956 395 MK 396 (624)
Q Consensus 395 ~~ 396 (624)
|.
T Consensus 527 My 528 (620)
T PRK00955 527 MY 528 (620)
T ss_pred cc
Confidence 85
No 28
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=4.8e-34 Score=317.31 Aligned_cols=280 Identities=20% Similarity=0.270 Sum_probs=204.1
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEEccccCcChh--hhcC-CccE-EEcCCchhHHHHHHHHHhc
Q 006956 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD--LKEL-EGVS-IVGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VVVgGc~aq~~~e--~~~~-~~d~-VvG~~~~~~l~ell~~~~~ 167 (624)
.++|+|+|+|+|.... .+.++++.+|+. +.+||+||+|++..|+ +... .+|. |.|+++ ..+.++++....
T Consensus 67 ~~~Dlv~is~~t~~~~---~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE-~~l~~l~~g~~~ 142 (472)
T TIGR03471 67 KDYDLVVLHTSTPSFP---SDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFD-YTIKEVAEGKPL 142 (472)
T ss_pred cCCCEEEEECCCcchH---HHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchH-HHHHHHHcCCCh
Confidence 3589999987766543 456667777765 5689999999999997 3343 3676 455555 678877653110
Q ss_pred ----CCeeE-----ee-c-cc-cCCCCC-CCc----cc------------CCceEEEEEeCCCCCCCCCCcccCccC-C-
Q 006956 168 ----GHEVR-----LL-H-RK-KLPALD-LPK----VR------------RNKFVEILPINVGCLGACTYCKTKHAR-G- 216 (624)
Q Consensus 168 ----g~~~~-----~~-~-~~-~~~~~~-lp~----~r------------~~~~~a~I~isrGCp~~CsFC~ip~~r-G- 216 (624)
|-..+ .. . .. ...+++ +|. ++ .....+.|++|||||++|+||.++... |
T Consensus 143 ~~i~Gi~~r~~~g~~~~~~~~~~~~dLd~lP~p~p~~~~~l~~~~y~~~~~~~~~~~i~tsRGCp~~C~FC~~~~~~~g~ 222 (472)
T TIGR03471 143 AEIDGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGH 222 (472)
T ss_pred hcCCceEEEcCCCeEEeCCCCCCccchhhCCCCchhhhccCCHHHcccccccCceEEEEecCCCCCCCCCCCCCccCCCC
Confidence 00000 00 0 00 011111 111 00 012346789999999999999987543 4
Q ss_pred CcccCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006956 217 HLGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (624)
Q Consensus 217 ~~Rsr~~e~Iv~EI~~L~~~--GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~e 294 (624)
++|.++++.|++||+.+.+. |+++|+|.|++++.. . ..+.+|++.+.+ . +..|... ... .++++
T Consensus 223 ~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~-~---~~~~~l~~~l~~-~---~i~~~~~--~~~-~~~~e--- 288 (472)
T TIGR03471 223 RYRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDD-K---PRAEEIARKLGP-L---GVTWSCN--ARA-NVDYE--- 288 (472)
T ss_pred ceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCC-H---HHHHHHHHHHhh-c---CceEEEE--ecC-CCCHH---
Confidence 58999999999999999885 889999988766532 1 246677777764 2 3334322 222 24433
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+.++++..+ |.++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.+++++|++++.++
T Consensus 289 ~l~~l~~aG-~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~--Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 289 TLKVMKENG-LRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHHHcC-CCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 344454554 89999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCeEEEEEeeeCCCCcccc
Q 006956 375 KFPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 375 ~~~~v~i~~ysP~PGTpa~~ 394 (624)
+++.++++.++|+||||+++
T Consensus 366 ~~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 366 NPHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred CCCceeeeecccCCCcHHHH
Confidence 99999999999999999874
No 29
>PRK01254 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=305.85 Aligned_cols=200 Identities=20% Similarity=0.306 Sum_probs=174.2
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCC-cccCCHHHHHHHHHHHHHC--CCcEEE--EeecCCCCCCC---C---------
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD--GVKEVW--LSSEDTGAYGR---D--------- 254 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~EI~~L~~~--GvkeI~--l~g~d~~~yg~---d--------- 254 (624)
..++|+|+|||+++|+||+++..+|+ ++|||+++|++|++.+.+. |+++++ |+|++.+.||. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 34899999999999999999999999 7999999999999999974 999999 99999999996 2
Q ss_pred -----------cc---CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHH
Q 006956 255 -----------IG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320 (624)
Q Consensus 255 -----------~~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vL 320 (624)
+. ..+.+||++|.+ ++ ++.++++.+..|.++....+++.+.+....++.+|+|++||+|+++|
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~-Ip--GVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VL 528 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARD-LK--GIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPL 528 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHh-CC--CceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHH
Confidence 11 258999999975 66 88899999988877642212233333335778899999999999999
Q ss_pred HhhcCC--CCHHHHHHHHHHHHHhCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCC---CCcccc
Q 006956 321 SAMNRE--YTLSDFRTVVDTLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GTPAAR 394 (624)
Q Consensus 321 k~M~R~--~t~e~~~e~I~~lr~~~p-gi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~P---GTpa~~ 394 (624)
+.|+|+ ++.++|.++++++++.+| ++.+.++||+||||||++||+++++|+++++++..+++.|+|.| ||.+|.
T Consensus 529 k~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~T~MYy 608 (707)
T PRK01254 529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANATTMYY 608 (707)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCchHHHh
Confidence 999998 789999999999999988 68999999999999999999999999999999999999999999 666654
No 30
>PRK05481 lipoyl synthase; Provisional
Probab=99.97 E-value=5e-30 Score=267.63 Aligned_cols=213 Identities=15% Similarity=0.216 Sum_probs=175.0
Q ss_pred CceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 190 ~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
....+||.+|+||+++|+||++|..+| +++++++|+++++.+.+.|+++|+|+|+|...+.......+.+||+.|.+.
T Consensus 51 ~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~ 128 (289)
T PRK05481 51 RGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIREL 128 (289)
T ss_pred CCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhh
Confidence 356789999999999999999998775 789999999999999999999999999986543210013689999999876
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEE
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~ 349 (624)
.+ +. ++++.+.+|....+. +..++..+ ...+....++ ++++|+.|+|+++.++++++++.+++.+||+.+.
T Consensus 129 ~p--~i-rI~~l~~~~~~~~e~---L~~l~~ag--~~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~ 199 (289)
T PRK05481 129 NP--GT-TIEVLIPDFRGRMDA---LLTVLDAR--PDVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGIPTK 199 (289)
T ss_pred CC--Cc-EEEEEccCCCCCHHH---HHHHHhcC--cceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 54 33 566554444333333 44444332 3334444565 5899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHhCc
Q 006956 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFEAFTP 419 (624)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~-~~~~vp~~~~~~R~~~L~~l~~~~~~ 419 (624)
+|||+|| |||++||.+|++++++++++.+++|+|+| |++ .| ++|++++++|+++|++++.+.-+
T Consensus 200 t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~----pa~k~~-~v~~~~k~~r~~~l~~~~~~i~~ 264 (289)
T PRK05481 200 SGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ----PSRKHL-PVERYVTPEEFDEYKEIALELGF 264 (289)
T ss_pred eeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC----CccccC-CCCCcCCHHHHHHHHHHHHHcCc
Confidence 9999999 99999999999999999999999999999 788 66 99999999999999999997544
No 31
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.95 E-value=7.2e-26 Score=250.47 Aligned_cols=302 Identities=23% Similarity=0.361 Sum_probs=209.4
Q ss_pred CCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEEccccCcChh-hhcC-CccE-EEcCCchhHHHHHHHHHhcCC
Q 006956 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD-LKEL-EGVS-IVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 95 ~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VVVgGc~aq~~~e-~~~~-~~d~-VvG~~~~~~l~ell~~~~~g~ 169 (624)
.++.+.+..+.- ........++...+.. ++.|++||.+++..+. +... +.|. ++|+++ ..++++++....+.
T Consensus 72 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~GG~~~t~~~~~~~~~~~~D~iv~GeGE-~~~~~~~~~~~~~~ 148 (490)
T COG1032 72 RADLIGVSDPLG--GLRPDALKLVAKARGRRDKPLVVVGGPEATENPEPLLDFGPADIIVIGEGE-ETLPELLEALEEGE 148 (490)
T ss_pred cceeEEEecccc--hhchhhhHHHHHHhcccCCCeEEecCCCcCCCcHHHHhhcCCCEEEEcCch-HHHHHHHHHHhccc
Confidence 355666633332 1112334444444433 2458999999998875 4433 4576 556665 68888888765543
Q ss_pred ee--------E----e-e----ccccCCCCCC---------CcccC-CceEEEEEeCCCCCCCCCCcccCccCCCcccCC
Q 006956 170 EV--------R----L-L----HRKKLPALDL---------PKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222 (624)
Q Consensus 170 ~~--------~----~-~----~~~~~~~~~l---------p~~r~-~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~ 222 (624)
.. + . . +..+.+..++ |.... .....+|+++||||++|+||.++... ++|+++
T Consensus 149 ~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~ 227 (490)
T COG1032 149 DDPRVPGLALPSFEEIVYDQDLDDVPIPAYDLVDDHKRDDLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRR 227 (490)
T ss_pred cccccCccccCChhhcccccccccCCccceeecccccccccCCcccccceEEEEEeccCCCCCCCCCCCcccc-cccCCC
Confidence 21 0 0 0 1111222221 11111 23357899999999999999998766 799999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--c-CCHHHHHHHHHHhCCCCCCceEEEe--ecCCcchhHHHHHHHH
Q 006956 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--G-VNLPILLNAIVAELPPDGSTMLRIG--MTNPPFILEHLKEIAE 297 (624)
Q Consensus 223 ~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--~-~~l~eLL~~l~~~l~~~~~~~iri~--~~~p~~i~~~l~el~~ 297 (624)
++++++|++.+++.|.+.+.+..+|.+.|+.+. . ..+..+...+.+... .....+.+. .++++.+++ +++..
T Consensus 228 ~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~r~d~~~~--~~~~~ 304 (490)
T COG1032 228 PERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIERGL-RKGCRVHISAPSLRADTVTD--EELLK 304 (490)
T ss_pred HHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHHhc-ccCceeeeeccccCchhcCH--HHHHH
Confidence 999999999999999999887777888888752 1 223333333433221 122333333 245665552 23455
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHH-HHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH---HHHHHH
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT-VVDTLIELVPGMQIATDIICGFPGETDEDFNQT---VNLIKE 373 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e-~I~~lr~~~pgi~i~td~IvGfPGETeedf~eT---l~fl~e 373 (624)
+++..+ +..+.+|+||+|+++|+.|+|+++.++..+ +++.++++ ++.+..++|+|+||||++|+++| ++++++
T Consensus 305 ~~~~~g-~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~--~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~ 381 (490)
T COG1032 305 LLREAG-LRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEH--GLRVKLYFIVGLPGETEEDVKETIELAKFIKK 381 (490)
T ss_pred HHhhCC-CcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhC--CceeeEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 555555 789999999999999999999999999995 99999999 99999999999999999999999 788888
Q ss_pred cCCC-eEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 006956 374 YKFP-QVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (624)
Q Consensus 374 l~~~-~v~i~~ysP~PGTpa~~~~~vp~~~~~~R 406 (624)
++.. .+.++.|+|.|||+++.++......+.++
T Consensus 382 ~~~~~~~~~~~~~p~p~t~~~~~~~~~~~~~~~~ 415 (490)
T COG1032 382 LGPKLYVSPSPFVPLPGTPLQEMPKLENELLKRR 415 (490)
T ss_pred hCccceEEEeeeeCCCCCchhhcccccchhhhhh
Confidence 8885 89999999999999998875444444333
No 32
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.94 E-value=3.6e-24 Score=226.13 Aligned_cols=280 Identities=23% Similarity=0.318 Sum_probs=211.6
Q ss_pred ceEEEEEeCCCCCCC----CCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeec-CCCCCCCCc---------c
Q 006956 191 KFVEILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDI---------G 256 (624)
Q Consensus 191 ~~~a~I~isrGCp~~----CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~-d~~~yg~d~---------~ 256 (624)
..++-|+++|||+++ ||||..|.. |....||+|+|++|++.|.+.|++++.|.-| |+++|+.+. .
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnP 260 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNP 260 (560)
T ss_pred eEEEEEeeccCCcccccCCCccccCcCc-CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCH
Confidence 456889999999987 999999986 9999999999999999999999999998755 788887652 1
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH---HHHHH-hCCCcceeccccCCCCCHHHHHhhcCCCCHHHH
Q 006956 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE---IAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332 (624)
Q Consensus 257 ~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~e---l~~l~-~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~ 332 (624)
+.+.+|.+.+...-| +...+++...||..+...-++ +.+.+ +...--+-..+|+||+++++.+.-|=..+.|++
T Consensus 261 ealekL~~Gir~~AP--~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEv 338 (560)
T COG1031 261 EALEKLFRGIRNVAP--NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEV 338 (560)
T ss_pred HHHHHHHHHHHhhCC--CCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHH
Confidence 247778888877666 778899999999888654433 33222 222123678899999999999999999999999
Q ss_pred HHHHHHHHHh--------CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc-----CCCeEEEEEeeeCCCCccccCCCCC
Q 006956 333 RTVVDTLIEL--------VPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVP 399 (624)
Q Consensus 333 ~e~I~~lr~~--------~pgi~i~td~IvGfPGETeedf~eTl~fl~el-----~~~~v~i~~ysP~PGTpa~~~~~vp 399 (624)
.++|+.+.+. +|-+-...+||+|+||||.|+|+.+.+|++++ -+.+++|-+..++||||++.+.
T Consensus 339 l~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~--- 415 (560)
T COG1031 339 LEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERG--- 415 (560)
T ss_pred HHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhhh---
Confidence 9999999986 35556778899999999999999999999987 3578999999999999999553
Q ss_pred HHHHHHHHHHHHHHHHH-----h--Ccccc--CCCcEEE-EEEEEEecCCeee-----eeEE-EEEcCCCCCCCCEEEEE
Q 006956 400 SAVVKKRSRELTSVFEA-----F--TPYLG--MEGRVER-IWITEIAADGIHL-----GYVQ-VLVPSTGNMLGTSALVK 463 (624)
Q Consensus 400 ~~~~~~R~~~L~~l~~~-----~--~~~~~--~vG~~~~-VLve~~~~~g~~~-----~y~~-V~~~~~~~~~G~~v~V~ 463 (624)
..+.++.+++...++. + ..+++ -.|++++ |.+|-.. ++..+ +|.. |-++. ...+|++++|.
T Consensus 416 -~~~~~khk~~~~~fk~~VRe~iD~~MLkrVvP~GTvLrdv~vE~~~-~~~tfgRQ~GSYPllvgi~~-~~~~g~~~Dv~ 492 (560)
T COG1031 416 -KKKAEKHKKLFAAFKRKVREEIDLPMLKRVVPKGTVLRDVRVEVYE-GGLTFGRQLGSYPLLVGIPG-RLELGRYVDVV 492 (560)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhcCHHHHHhcCCCCceeeeEEEEEec-CCceeecccCCcceEeeccc-cccCCceEEEE
Confidence 2233333333333332 1 23333 3588874 6665443 34332 6643 44553 34689999999
Q ss_pred EEEEecceEEEEEEec
Q 006956 464 ITSVGRWSVFGEVIKI 479 (624)
Q Consensus 464 I~~~~~~~l~g~~v~~ 479 (624)
|++++..|..|.+...
T Consensus 493 vvdhG~RSVt~ip~pl 508 (560)
T COG1031 493 VVDHGARSVTAIPVPL 508 (560)
T ss_pred EeccCcceeeeccccc
Confidence 9999999999987644
No 33
>PRK07094 biotin synthase; Provisional
Probab=99.93 E-value=1.4e-24 Score=230.11 Aligned_cols=196 Identities=15% Similarity=0.279 Sum_probs=158.2
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCC-ccc-CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGH-LGS-YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~-~Rs-r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
..+.|++|+||+++|+||..+...+. .+. +++++|+++++.+.+.|+++|.|+|++...+.. ..+.++++.+.+.
T Consensus 39 ~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~---~~l~~l~~~i~~~ 115 (323)
T PRK07094 39 LRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTD---EKIADIIKEIKKE 115 (323)
T ss_pred EEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHcc
Confidence 35678999999999999999876554 333 489999999999999999999999775444432 3567888888653
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEE
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~ 349 (624)
. + ..+.++ +..++++. +. .++..+ +.++.+|+||+|+++++.|+++++.+++.++++.++++ |+.+.
T Consensus 116 -~--~-l~i~~~---~g~~~~e~--l~-~Lk~aG-~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~--Gi~v~ 182 (323)
T PRK07094 116 -L--D-VAITLS---LGERSYEE--YK-AWKEAG-ADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKEL--GYEVG 182 (323)
T ss_pred -C--C-ceEEEe---cCCCCHHH--HH-HHHHcC-CCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeec
Confidence 2 2 233333 22223322 33 344444 78999999999999999999999999999999999999 99999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHH
Q 006956 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 403 (624)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~ 403 (624)
+++|+|+||||.+++.++++++++++++.+.+++|+|.||||+++.+..+.+..
T Consensus 183 ~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~ 236 (323)
T PRK07094 183 SGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELT 236 (323)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999998876655443
No 34
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=2.1e-24 Score=231.35 Aligned_cols=212 Identities=18% Similarity=0.278 Sum_probs=169.7
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCC-----CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG-----~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l 266 (624)
...||.|-- |+.+|.||..+...+ .+..+..++|..|++.+....++.|+|.|.+.+.... ..+.+|++.+
T Consensus 7 ~~lYiHiPF-C~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~---~~l~~ll~~i 82 (353)
T PRK05904 7 KHLYIHIPF-CQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLND---QLLDILLSTI 82 (353)
T ss_pred eEEEEEeCC-ccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCH---HHHHHHHHHH
Confidence 345666644 999999999875422 1333345666666665433457788888876665533 3577888888
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006956 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (624)
.+.++ ....+.+. .+|..++++. +. .++..+ +++|++|+||+++++|+.|+|+++.+++.++++.++++ |+
T Consensus 83 ~~~~~--~~~eitiE-~nP~~lt~e~--l~-~lk~~G-~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~--G~ 153 (353)
T PRK05904 83 KPYVD--NNCEFTIE-CNPELITQSQ--IN-LLKKNK-VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN--GI 153 (353)
T ss_pred HHhcC--CCCeEEEE-eccCcCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CC
Confidence 77654 55677776 7999887644 43 444444 89999999999999999999999999999999999999 87
Q ss_pred E-EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH
Q 006956 347 Q-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 416 (624)
Q Consensus 347 ~-i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~ 416 (624)
. ++.|+|+|+||||.++++++++++.+++++++.++.|+++|||+++++. .++++...++...+.++.+.
T Consensus 154 ~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~ 225 (353)
T PRK05904 154 YNISCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNK 225 (353)
T ss_pred CcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHH
Confidence 5 9999999999999999999999999999999999999999999999876 57888888898888887775
No 35
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.92 E-value=7.9e-24 Score=221.42 Aligned_cols=195 Identities=21% Similarity=0.312 Sum_probs=157.4
Q ss_pred CceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHH
Q 006956 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (624)
Q Consensus 190 ~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~ 268 (624)
....+|+.+++||+++|+||+++..+|+.++ ++++++++++.+.+.|+++|+|+++|...+. |.+ ..+.+++++|.+
T Consensus 61 ~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 61 HGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIRE 138 (302)
T ss_pred CCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHh
Confidence 4567899999999999999999998887766 5799999999999999999999998776553 222 468999999987
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (624)
..+ + ..+++ +.|+... . .++.+.+...+ ...+...+|+. +++++.|+|+++.++++++++.+++.+||+.+
T Consensus 139 ~~p--~-i~Iev--l~~d~~g-~-~e~l~~l~~aG-~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~ 209 (302)
T TIGR00510 139 KLP--N-IKIET--LVPDFRG-N-IAALDILLDAP-PDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLPT 209 (302)
T ss_pred cCC--C-CEEEE--eCCcccC-C-HHHHHHHHHcC-chhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 554 2 23444 4443221 1 11223333333 56677889977 88999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEee-e-CCCCccccCC
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY-P-RPGTPAARMK 396 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ys-P-~PGTpa~~~~ 396 (624)
.++||+|| |||++|+.++++++++++++.+.+++|. | .+++|..++.
T Consensus 210 ~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~ 258 (302)
T TIGR00510 210 KSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYV 258 (302)
T ss_pred cceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCC
Confidence 99999999 9999999999999999999999999996 5 6777776654
No 36
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=99.92 E-value=4.8e-25 Score=193.94 Aligned_cols=92 Identities=42% Similarity=0.683 Sum_probs=84.4
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEEccccC
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQ 136 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~aq 136 (624)
||||+||||+||++|||.|++.|.+.||++++++++||+++||||+|+++|++++++.++++++.+ ++|||+||+||
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQ 80 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccc
Confidence 699999999999999999999999999999999999999999999999999999999999987765 78999999999
Q ss_pred cChh-hh-cCC-ccEEEc
Q 006956 137 GSRD-LK-ELE-GVSIVG 151 (624)
Q Consensus 137 ~~~e-~~-~~~-~d~VvG 151 (624)
.+++ +. ..+ +|.|+|
T Consensus 81 ~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 81 RYGEELKKEFPEVDLVVG 98 (98)
T ss_pred cChHHHHhhCCCeEEEeC
Confidence 9996 44 445 577887
No 37
>PRK12928 lipoyl synthase; Provisional
Probab=99.92 E-value=1.8e-23 Score=218.06 Aligned_cols=194 Identities=19% Similarity=0.277 Sum_probs=152.7
Q ss_pred CceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHH
Q 006956 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (624)
Q Consensus 190 ~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~ 268 (624)
....+||.+++||+++|+||+++. |+.+++++++++++++.+.+.|+++|+|+|.+...+. |.+ ..+.+++++|.+
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~ 134 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRA 134 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHh
Confidence 456789999999999999999987 6677899999999999999999999999997653321 111 358899999987
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (624)
..+ .+++..+.|+.+....+.|..+...+ ...+..++|| ++++++.|+|+++.++++++++.+++..|++.+
T Consensus 135 ~~p-----~~~I~~ltp~~~~~~~e~L~~l~~Ag--~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~ 206 (290)
T PRK12928 135 RNP-----GTGIEVLTPDFWGGQRERLATVLAAK--PDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDIPT 206 (290)
T ss_pred cCC-----CCEEEEeccccccCCHHHHHHHHHcC--chhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcee
Confidence 543 33455556654421112244444332 3344455776 699999999999999999999999999777999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeee--CCCCccccC
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP--RPGTPAARM 395 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP--~PGTpa~~~ 395 (624)
.++||+|| |||++|+.++++++++++++.+++|+|.+ ....|..++
T Consensus 207 ~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~ 254 (290)
T PRK12928 207 KSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRY 254 (290)
T ss_pred cccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeec
Confidence 99999999 99999999999999999999999999986 445554443
No 38
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=1.8e-23 Score=226.42 Aligned_cols=193 Identities=21% Similarity=0.335 Sum_probs=157.3
Q ss_pred eEEEEEeCCCCCCCCCCcccCcc--CCCcccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCccCCHHHHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~--rG~~Rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l 266 (624)
...||.|.- |+++|+||.++.. ++..+.+.++.+++|++.+... +++.|+|.|.+.+.... ..+.++++.+
T Consensus 2 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~---~~l~~ll~~i 77 (377)
T PRK08599 2 TSAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSA---EQLERLLTAI 77 (377)
T ss_pred ceEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCH---HHHHHHHHHH
Confidence 356888886 9999999998753 4455677899999999776554 56777777665544322 3678899988
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006956 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (624)
.+.++..+...+.+. ++|+.++++. +. .++..+ +++++||+||+|+++|+.|+|+++.+++.++++.++++ |+
T Consensus 78 ~~~~~~~~~~eit~e-~~p~~l~~e~--l~-~l~~~G-~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~--g~ 150 (377)
T PRK08599 78 HRNLPLSGLEEFTFE-ANPGDLTKEK--LQ-VLKDSG-VNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKA--GF 150 (377)
T ss_pred HHhCCCCCCCEEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CC
Confidence 876542233456665 7998887654 33 444444 89999999999999999999999999999999999999 87
Q ss_pred E-EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC
Q 006956 347 Q-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 347 ~-i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~ 395 (624)
. +..|+|+|+||||.++++++++++.+++++++.++.++|+|||++++.
T Consensus 151 ~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~ 200 (377)
T PRK08599 151 DNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNL 200 (377)
T ss_pred CcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHH
Confidence 5 789999999999999999999999999999999999999999999865
No 39
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.91 E-value=6.5e-23 Score=221.90 Aligned_cols=213 Identities=20% Similarity=0.294 Sum_probs=165.4
Q ss_pred EEEEEeCCCCCCCCCCcccCccC-CCcc-cCC----HHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCccCCHH
Q 006956 193 VEILPINVGCLGACTYCKTKHAR-GHLG-SYT----VESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLP 260 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~r-G~~R-sr~----~e~Iv~EI~~L~~~------GvkeI~l~g~d~~~yg~d~~~~l~ 260 (624)
..||.|- -|+++|+||.++... ++.+ +.+ ++.+.+||+...+. .++.|+|.|++.+.... ..+.
T Consensus 4 ~lYiHiP-FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~ 79 (375)
T PRK05628 4 GVYVHVP-FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGA---EGLA 79 (375)
T ss_pred EEEEEeC-CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCH---HHHH
Confidence 4566665 499999999986543 2322 233 78899999876653 26778887776665533 3678
Q ss_pred HHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 006956 261 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340 (624)
Q Consensus 261 eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr 340 (624)
+|++.+.+.+.......+.+. ++|..++++. +. .++..+ +++|++|+||+|+++|+.|+|+++.+++.++++.++
T Consensus 80 ~ll~~i~~~~~~~~~~e~t~e-~~p~~i~~e~--l~-~l~~~G-~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~ 154 (375)
T PRK05628 80 RVLDAVRDTFGLAPGAEVTTE-ANPESTSPEF--FA-ALRAAG-FTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREAR 154 (375)
T ss_pred HHHHHHHHhCCCCCCCEEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888775532223345554 6899887654 33 333444 899999999999999999999999999999999999
Q ss_pred HhCCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC------CCCHHHHHHHHHHHHHH
Q 006956 341 ELVPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK------KVPSAVVKKRSRELTSV 413 (624)
Q Consensus 341 ~~~pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~------~vp~~~~~~R~~~L~~l 413 (624)
++ |+. +..|+|+|+||||.+++.++++++.+++++++.++.++++||||+++.. .+++++..++...+.+.
T Consensus 155 ~~--g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (375)
T PRK05628 155 AA--GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADAR 232 (375)
T ss_pred Hc--CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHH
Confidence 99 987 9999999999999999999999999999999999999999999998742 34566677777777666
Q ss_pred HHH
Q 006956 414 FEA 416 (624)
Q Consensus 414 ~~~ 416 (624)
..+
T Consensus 233 l~~ 235 (375)
T PRK05628 233 LSA 235 (375)
T ss_pred HHH
Confidence 654
No 40
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.7e-22 Score=223.34 Aligned_cols=194 Identities=18% Similarity=0.259 Sum_probs=159.9
Q ss_pred ceEEEEEeCCCCCCCCCCcccCcc--CCCcccCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCccCCHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPIL 262 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~--rG~~Rsr~~e~Iv~EI~~L~~~------GvkeI~l~g~d~~~yg~d~~~~l~eL 262 (624)
+...||.|-- |+++|+||.+... .+..+.+.++.+++||+...+. .++.|+|.|.+.+.... ..+.+|
T Consensus 61 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~---~~l~~l 136 (449)
T PRK09058 61 KRLLYIHIPF-CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSA---EDLARL 136 (449)
T ss_pred ceEEEEEeCC-cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCH---HHHHHH
Confidence 4567888866 9999999987543 2335566899999999987652 46778887766655433 367889
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006956 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 263 L~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (624)
++.+.+.++......+.+. .+|..++++. +. .++..+ +++|+||+||+|+++|+.|+|.++.+++.++++.++++
T Consensus 137 l~~i~~~~~l~~~~eitiE-~~p~~~t~e~--l~-~l~~aG-vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~ 211 (449)
T PRK09058 137 ITALREYLPLAPDCEITLE-GRINGFDDEK--AD-AALDAG-ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR 211 (449)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCcCcCCHHH--HH-HHHHcC-CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 9998877654345677776 7898887654 43 344444 89999999999999999999999999999999999999
Q ss_pred CCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC
Q 006956 343 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 343 ~pg-i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~ 395 (624)
| ..+..|+|+|+||||.++++++++++.+++++++.++.|+++|||++++.
T Consensus 212 --g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~ 263 (449)
T PRK09058 212 --DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKA 263 (449)
T ss_pred --CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHH
Confidence 8 78999999999999999999999999999999999999999999999875
No 41
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=2.3e-22 Score=217.51 Aligned_cols=192 Identities=20% Similarity=0.324 Sum_probs=151.1
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
...||.|-- |+++|+||.++...++ .+...++.+++|++.+.. .+++.|+|.|.+.+.... ..+..|++.+..
T Consensus 4 ~~lYiHiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~---~~l~~L~~~i~~ 79 (374)
T PRK05799 4 ISLYIHIPF-CKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSL---EALEILKETIKK 79 (374)
T ss_pred eEEEEEeCC-ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCH---HHHHHHHHHHHh
Confidence 345777765 9999999999876554 333469999999986643 357778877765544322 235566666643
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ- 347 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~- 347 (624)
+.......+.+. ++|..++++. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++ |+.
T Consensus 80 -~~~~~~~eitie-~~p~~~t~e~--l~-~l~~~G-~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--g~~~ 151 (374)
T PRK05799 80 -LNKKEDLEFTVE-GNPGTFTEEK--LK-ILKSMG-VNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL--GFNN 151 (374)
T ss_pred -CCCCCCCEEEEE-eCCCcCCHHH--HH-HHHHcC-CCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCc
Confidence 331123455555 7898887754 33 444444 79999999999999999999999999999999999999 885
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC
Q 006956 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~ 395 (624)
+..|+|+|+||||.+++.++++++.+++++++.+|.++|+||||++++
T Consensus 152 v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~ 199 (374)
T PRK05799 152 INVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNL 199 (374)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHH
Confidence 899999999999999999999999999999999999999999999875
No 42
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=4.7e-22 Score=221.04 Aligned_cols=215 Identities=20% Similarity=0.283 Sum_probs=166.2
Q ss_pred ceEEEEEeCCCCCCCCCCcccCcc--CC-C-cccCCHHHHHHHHHHHHH------CCCcEEEEeecCCCCCCCCccCCHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHA--RG-H-LGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIGVNLP 260 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~--rG-~-~Rsr~~e~Iv~EI~~L~~------~GvkeI~l~g~d~~~yg~d~~~~l~ 260 (624)
....||.|- .||.+|.||.++.. .+ + .....++.+++|++.+.+ .++..|+|.|++.+.... ..+.
T Consensus 163 ~~sLYihIP-FC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~---~~L~ 238 (488)
T PRK08207 163 EVSIYIGIP-FCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTA---EELE 238 (488)
T ss_pred ceEEEEecC-CCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCH---HHHH
Confidence 456788775 69999999998764 12 1 122357889999987643 256778888876655433 3678
Q ss_pred HHHHHHHHhCC-CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHH
Q 006956 261 ILLNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339 (624)
Q Consensus 261 eLL~~l~~~l~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~l 339 (624)
+|++.+.+.++ ..+...+++...+|+.+++.. +. .++..+ +++++||+||+++++|+.|+|+|+.+++.++++.+
T Consensus 239 ~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~--L~-~Lk~~G-v~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~a 314 (488)
T PRK08207 239 RLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK--LE-VLKKYG-VDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLA 314 (488)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCHHH--HH-HHHhcC-CCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 89988877653 123446677666899888754 43 444444 78999999999999999999999999999999999
Q ss_pred HHhCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC---CCC-HHHHHHHHHHHHHHH
Q 006956 340 IELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK---KVP-SAVVKKRSRELTSVF 414 (624)
Q Consensus 340 r~~~pgi-~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~---~vp-~~~~~~R~~~L~~l~ 414 (624)
+++ |+ .+.+|+|+|+||||.+++.+|++++.+++++++.++.+++.|||++++.. .+| +++..+......+..
T Consensus 315 r~~--Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 315 REM--GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred HhC--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 999 98 89999999999999999999999999999999999999999999999653 344 444444444444444
Q ss_pred H
Q 006956 415 E 415 (624)
Q Consensus 415 ~ 415 (624)
+
T Consensus 393 ~ 393 (488)
T PRK08207 393 K 393 (488)
T ss_pred H
Confidence 4
No 43
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=8.8e-22 Score=214.70 Aligned_cols=193 Identities=17% Similarity=0.256 Sum_probs=154.5
Q ss_pred eEEEEEeCCCCCCCCCCcccCcc-CCC-ccc-------CCHHHHHHHHHHHHH--CCCcEEEEeecCCCCCCCCccCCHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHA-RGH-LGS-------YTVESLVGRVRTVIA--DGVKEVWLSSEDTGAYGRDIGVNLP 260 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~-rG~-~Rs-------r~~e~Iv~EI~~L~~--~GvkeI~l~g~d~~~yg~d~~~~l~ 260 (624)
...||.|-- |+.+|.||.++.. .|. .+. .-++.+++||+.... .+++.|+|.|.+.+.... ..+.
T Consensus 11 ~~lYiHiPF-C~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~---~~l~ 86 (400)
T PRK07379 11 TSAYIHIPF-CRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSV---EQLE 86 (400)
T ss_pred cEEEEEecc-ccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHH
Confidence 345666643 9999999998753 221 111 236788888886543 257888888876665533 3678
Q ss_pred HHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 006956 261 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340 (624)
Q Consensus 261 eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr 340 (624)
++++.|.+.++......+++. ++|..+++.. +. .++..+ +++|+||+||+|+++|+.|+|+++.+++.++++.++
T Consensus 87 ~ll~~i~~~~~~~~~~eit~E-~~P~~lt~e~--l~-~l~~~G-vnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~ 161 (400)
T PRK07379 87 RILTTLDQRFGIAPDAEISLE-IDPGTFDLEQ--LQ-GYRSLG-VNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIH 161 (400)
T ss_pred HHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHH--HH-HHHHCC-CCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 888888876643344577776 7999887643 43 344444 899999999999999999999999999999999999
Q ss_pred HhCCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC
Q 006956 341 ELVPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 341 ~~~pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~ 395 (624)
++ |+. ++.|+|+|+||||.+++++|++++.+++++++.++.|+++||||+++.
T Consensus 162 ~~--G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~ 215 (400)
T PRK07379 162 QA--GIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQ 215 (400)
T ss_pred Hc--CCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHH
Confidence 99 986 999999999999999999999999999999999999999999999875
No 44
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=2.1e-22 Score=215.97 Aligned_cols=189 Identities=14% Similarity=0.218 Sum_probs=154.0
Q ss_pred EEEeCCCCCCCCCCcccCccC-C-CcccCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 195 ILPINVGCLGACTYCKTKHAR-G-HLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~r-G-~~Rsr~~e~Iv~EI~~L~~----~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
||.|-- |+.+|.||..+... + ..+.+.++.+++|++...+ .+++.|+|.|.+.+.... ..+.+|++.+.+
T Consensus 4 YiHiPF-C~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~---~~l~~ll~~i~~ 79 (350)
T PRK08446 4 YIHIPF-CESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSA---KFYEPIFEIISP 79 (350)
T ss_pred EEEeCC-ccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHH
Confidence 555533 99999999986542 2 2455678999999997653 267888888876655433 357788888876
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-E
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-Q 347 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~ 347 (624)
.+. ....+.+. ++|..+++.. +. .++..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++ |+ .
T Consensus 80 ~~~--~~~eitiE-~nP~~~~~e~--l~-~l~~~G-vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~--g~~~ 150 (350)
T PRK08446 80 YLS--KDCEITTE-ANPNSATKAW--LK-GMKNLG-VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKA--GFEN 150 (350)
T ss_pred hcC--CCceEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCE
Confidence 543 44567776 7998887654 43 344444 89999999999999999999999999999999999999 98 5
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC
Q 006956 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (624)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~ 396 (624)
++.|+|+|+||||.++++++++++.+++++++.++.|++.||||+++..
T Consensus 151 v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~ 199 (350)
T PRK08446 151 ISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKN 199 (350)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhh
Confidence 8999999999999999999999999999999999999999999998754
No 45
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.89 E-value=4.4e-22 Score=209.34 Aligned_cols=190 Identities=17% Similarity=0.337 Sum_probs=144.8
Q ss_pred EEEeCCCCCCC--------CCCcccCccCCCcc---cCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCccCCH
Q 006956 195 ILPINVGCLGA--------CTYCKTKHARGHLG---SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNL 259 (624)
Q Consensus 195 ~I~isrGCp~~--------CsFC~ip~~rG~~R---sr~~e~Iv~EI~~L~~----~GvkeI~l~g~d~~~yg~d~~~~l 259 (624)
.|-..-+||++ |+||.... .++++ .++.++|.++++...+ .+...++|.|.+ +.|... ..+
T Consensus 21 ~~~~g~~cpnrdg~~~~~gC~FC~~~~-~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt-~t~l~~--~~L 96 (302)
T TIGR01212 21 TLHGGFSCPNRDGTKGRGGCTFCNDAS-RPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYT-NTYAPV--EVL 96 (302)
T ss_pred ecCCCCCCCCCCCCCCCCCcccCCCCC-CccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCC-cCCCCH--HHH
Confidence 45567789994 99998633 34555 3555555555554443 222225665544 444321 356
Q ss_pred HHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcc-eeccccCCCCCHHHHHhhcCCCCHHHHHHHHHH
Q 006956 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338 (624)
Q Consensus 260 ~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~-~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~ 338 (624)
.++++.+.+ .+ ....+.+. ++|+.++++..++.+.+...+ + .++++|+||+++++|+.|+|+++.+++.++++.
T Consensus 97 ~~l~~~i~~-~~--~~~~isi~-trpd~l~~e~l~~L~~l~~~G-~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~ 171 (302)
T TIGR01212 97 KEMYEQALS-YD--DVVGLSVG-TRPDCVPDEVLDLLAEYVERG-YEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKR 171 (302)
T ss_pred HHHHHHHhC-CC--CEEEEEEE-ecCCcCCHHHHHHHHHhhhCC-ceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHH
Confidence 777777765 44 55667775 799988775533333333334 5 689999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC
Q 006956 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 339 lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~ 395 (624)
++++ |+.+.+++|+|+||||.+++.+|++++.+++++.+.+++++|.|||+++++
T Consensus 172 l~~~--gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~ 226 (302)
T TIGR01212 172 ARKR--GIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKM 226 (302)
T ss_pred HHHc--CCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999986
No 46
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=3.5e-21 Score=209.67 Aligned_cols=201 Identities=18% Similarity=0.261 Sum_probs=160.3
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCC-----cccCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCccCCHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPI 261 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~-----~Rsr~~e~Iv~EI~~L~~----~GvkeI~l~g~d~~~yg~d~~~~l~e 261 (624)
+...||.|-- |+.+|.||.++..... ...+-.+.+.+||+.... ..++.|+|.|.+.+.... ..|.+
T Consensus 19 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~---~~L~~ 94 (394)
T PRK08898 19 PLSLYVHFPW-CVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSA---AGLDR 94 (394)
T ss_pred CeEEEEEeCC-ccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCH---HHHHH
Confidence 3455666644 9999999998754221 113467888999886543 246788888877766543 36889
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006956 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341 (624)
Q Consensus 262 LL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~ 341 (624)
|++.+.+.++......+++. .+|..++... +..+. ..+ +++++||+||+|+++|+.|+|.++.+++.++++.+++
T Consensus 95 ll~~i~~~~~~~~~~eit~E-~~p~~~~~e~--L~~l~-~~G-vnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~ 169 (394)
T PRK08898 95 LLSDVRALLPLDPDAEITLE-ANPGTFEAEK--FAQFR-ASG-VNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAK 169 (394)
T ss_pred HHHHHHHhCCCCCCCeEEEE-ECCCCCCHHH--HHHHH-HcC-CCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999887764344677776 6898887633 54444 344 8999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHH
Q 006956 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402 (624)
Q Consensus 342 ~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~ 402 (624)
. +..++.|+|+|+||||.+++.++++++.+++++++.++.|++.|||++++.. .+|.++
T Consensus 170 ~--~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~ 229 (394)
T PRK08898 170 H--FDNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDD 229 (394)
T ss_pred h--CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChH
Confidence 8 6778999999999999999999999999999999999999999999999865 555443
No 47
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.88 E-value=2.2e-21 Score=208.86 Aligned_cols=197 Identities=17% Similarity=0.294 Sum_probs=154.2
Q ss_pred EEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHH-CC---CcEEEEeecCCCCCCCCccCCHHHHHHHHH
Q 006956 194 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~-~G---vkeI~l~g~d~~~yg~d~~~~l~eLL~~l~ 267 (624)
.||.|-. |+.+|.||........ ....-.+.+++|++...+ .| ++.|+|.|.+.+.... ..+.++++.|.
T Consensus 3 lYiHiPF-C~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~---~~l~~ll~~i~ 78 (360)
T TIGR00539 3 LYIHIPF-CENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSV---EAFERLFESIY 78 (360)
T ss_pred EEEEeCC-CcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCH---HHHHHHHHHHH
Confidence 3566654 9999999998654221 112246777788776443 24 7788888876665533 35778888887
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-
Q 006956 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM- 346 (624)
Q Consensus 268 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi- 346 (624)
+.+.......+.+. ++|..+++.. +. .++..+ ++++++|+||+++++|+.|+|.++.+++.++++.++++ |+
T Consensus 79 ~~~~~~~~~eitie-~np~~lt~e~--l~-~l~~~G-v~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~--G~~ 151 (360)
T TIGR00539 79 QHASLSDDCEITTE-ANPELITAEW--CK-GLKGAG-INRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS--GIE 151 (360)
T ss_pred HhCCCCCCCEEEEE-eCCCCCCHHH--HH-HHHHcC-CCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHc--CCC
Confidence 65532244567776 7999887754 43 343444 89999999999999999999999999999999999999 98
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHH
Q 006956 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 401 (624)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~ 401 (624)
.+..|+|+|+||||.+++.++++++.+++++++.++.|+|.|||++++.. ++|.+
T Consensus 152 ~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~ 207 (360)
T TIGR00539 152 NISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDD 207 (360)
T ss_pred eEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCH
Confidence 58999999999999999999999999999999999999999999999865 45543
No 48
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.88 E-value=2.9e-21 Score=212.51 Aligned_cols=212 Identities=18% Similarity=0.249 Sum_probs=162.2
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCC---cccCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCccCCHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~---~Rsr~~e~Iv~EI~~L~~~----GvkeI~l~g~d~~~yg~d~~~~l~eLL 263 (624)
+...||.|-. |+++|+||.++...+. .....++.+++||+.+.+. .+..|.|.|++.+.... ..+.+|+
T Consensus 39 ~~~lYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHIPF-CEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNA---AELEKLF 114 (430)
T ss_pred ceEEEEEeCC-ccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCH---HHHHHHH
Confidence 5567888855 9999999998765432 2345689999999987643 35677777655444322 3578888
Q ss_pred HHHHHhCCCCC-CceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006956 264 NAIVAELPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 264 ~~l~~~l~~~~-~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (624)
+.+.+.++... ...+.+. ++|..+++.. +. .++..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 115 ~~i~~~~~~~~~~~eitiE-~~P~~lt~e~--l~-~l~~~G-~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~ 189 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSVE-TSPATTTAEK--LA-LLAARG-VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA 189 (430)
T ss_pred HHHHHhCCCCCCCceEEEE-eCcCcCCHHH--HH-HHHHcC-CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 88876554211 3456665 7898887654 43 343444 79999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHH
Q 006956 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 413 (624)
Q Consensus 343 ~pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~L~~l 413 (624)
|+. +..|+|+|+||||.++++++++++.+++++++.++++++.|||++++.....++...+......+.
T Consensus 190 --g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~ 259 (430)
T PRK08208 190 --GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDL 259 (430)
T ss_pred --CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHH
Confidence 885 689999999999999999999999999999999999999999999876533334333443343333
No 49
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=3.3e-21 Score=208.96 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=165.6
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCc--ccCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCccCCHHHHHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~~--Rsr~~e~Iv~EI~~L~~~----GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l 266 (624)
..||.|-- |..+|+||......... ..+.++.+++||+...+. .++.|+|.|.+.+.... ..+.+|++.+
T Consensus 6 ~lYiHIPF-C~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~L~~ll~~i 81 (380)
T PRK09057 6 GLYVHWPF-CLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQP---ETVAALLDAI 81 (380)
T ss_pred EEEEEeCC-cCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCH---HHHHHHHHHH
Confidence 45666643 99999999986543211 123688999999876542 47788888876665432 3678889999
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006956 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (624)
.+.++......+.+. ++|..++... +..+. ..+ +++|+||+||++|++|+.|+|+|+.+++.++++.++++ +.
T Consensus 82 ~~~f~~~~~~eit~E-~~P~~i~~e~--L~~l~-~~G-vnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~--~~ 154 (380)
T PRK09057 82 ARLWPVADDIEITLE-ANPTSVEAGR--FRGYR-AAG-VNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREI--FP 154 (380)
T ss_pred HHhCCCCCCccEEEE-ECcCcCCHHH--HHHHH-HcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHh--Cc
Confidence 887653344567776 7999887643 44433 444 79999999999999999999999999999999999998 88
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-----CCC-HHHHHHHHHHHHHHHHH
Q 006956 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----KVP-SAVVKKRSRELTSVFEA 416 (624)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-----~vp-~~~~~~R~~~L~~l~~~ 416 (624)
.++.|+|+|+||||.+++.++++.+.+++++++.++++++.|||++++.. .+| +++..+....+.++...
T Consensus 155 ~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 230 (380)
T PRK09057 155 RVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAA 230 (380)
T ss_pred cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998753 233 44555555666555553
No 50
>PRK06256 biotin synthase; Validated
Probab=99.87 E-value=6.3e-21 Score=203.41 Aligned_cols=192 Identities=19% Similarity=0.273 Sum_probs=149.8
Q ss_pred CCCCCCCCCCcccCccCC----CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCC
Q 006956 199 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (624)
Q Consensus 199 srGCp~~CsFC~ip~~rG----~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~ 274 (624)
++||+++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++........+ ...+.++++.+.+.. +
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~-~~~~~e~i~~i~~~~---~ 140 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKE-VDQVVEAVKAIKEET---D 140 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchH-HHHHHHHHHHHHhcC---C
Confidence 899999999999986543 36778999999999999999999988875432222111 024566666665531 2
Q ss_pred CceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 006956 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (624)
Q Consensus 275 ~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv 354 (624)
+.+. ++...++++. +. .++..+ +.++++++|| |+++++.|+++++.+++.++++.++++ |+.+.+++|+
T Consensus 141 ---i~~~-~~~g~l~~e~--l~-~LkeaG-~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~--Gi~v~~~~I~ 209 (336)
T PRK06256 141 ---LEIC-ACLGLLTEEQ--AE-RLKEAG-VDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAA--GIEPCSGGII 209 (336)
T ss_pred ---CcEE-ecCCcCCHHH--HH-HHHHhC-CCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHc--CCeeccCeEE
Confidence 2222 2222344432 33 333444 7899999999 999999999999999999999999999 9999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 006956 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (624)
Q Consensus 355 GfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R 406 (624)
|+ |||.+|+.+++.++++++++.+.++.|.|+||||++..+.++..+..+.
T Consensus 210 Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ 260 (336)
T PRK06256 210 GM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKT 260 (336)
T ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHH
Confidence 98 9999999999999999999999999999999999998877776655444
No 51
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.87 E-value=2.1e-20 Score=202.56 Aligned_cols=213 Identities=15% Similarity=0.234 Sum_probs=162.6
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCC--cc-cCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCccCCHHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGH--LG-SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~--~R-sr~~e~Iv~EI~~L~~----~GvkeI~l~g~d~~~yg~d~~~~l~eLL~ 264 (624)
...||.|-- |+.+|.||.......+ .. ..-.+.+++||+.... .+++.|+|.|.+.+.... ..+.++++
T Consensus 7 ~~lYiHiPF-C~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~---~~l~~ll~ 82 (378)
T PRK05660 7 LSLYIHIPW-CVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSA---EAIQRLLD 82 (378)
T ss_pred eEEEEEeCC-ccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCH---HHHHHHHH
Confidence 356777765 9999999997653221 11 1136778888875322 468889998887766543 36788899
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006956 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (624)
Q Consensus 265 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (624)
.+.+.++......+.+. ++|..++... +..+ +..+ +++|+||+||+++++|+.|+|+++.++..++++.+++.
T Consensus 83 ~l~~~~~~~~~~eit~e-~np~~l~~e~--l~~L-k~~G-v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~-- 155 (378)
T PRK05660 83 GVRARLPFAPDAEITME-ANPGTVEADR--FVGY-QRAG-VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGL-- 155 (378)
T ss_pred HHHHhCCCCCCcEEEEE-eCcCcCCHHH--HHHH-HHcC-CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc--
Confidence 88876653234577776 7999887743 4433 3444 79999999999999999999999999999999999999
Q ss_pred CC-EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCH-HHHHHHHHHHHHHHH
Q 006956 345 GM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS-AVVKKRSRELTSVFE 415 (624)
Q Consensus 345 gi-~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~-~~~~~R~~~L~~l~~ 415 (624)
|+ .+..|+|+|+||||.+++.++++++.+++++++.+++++++|||++++.. .+|. +...+......+...
T Consensus 156 G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (378)
T PRK05660 156 GLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLT 229 (378)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHH
Confidence 98 47899999999999999999999999999999999999999999999764 4554 333333343444333
No 52
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.86 E-value=5.5e-21 Score=201.91 Aligned_cols=192 Identities=17% Similarity=0.180 Sum_probs=145.3
Q ss_pred eEEEEEeCCCCCC----CCCCcccCccCCCcccCCHHHHHHHHHHHHHC-CCcE----E-EEeecCCCCCCCCccCCHHH
Q 006956 192 FVEILPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE----V-WLSSEDTGAYGRDIGVNLPI 261 (624)
Q Consensus 192 ~~a~I~isrGCp~----~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~-Gvke----I-~l~g~d~~~yg~d~~~~l~e 261 (624)
....|..+||||+ +|+||.... +.++.++++.|+++++.+.+. +.+. + .|+++.+.....-....+.+
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~--~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~ 92 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLA--DSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNY 92 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCC--CCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHH
Confidence 3456899999999 599997543 345667999999999998874 3321 1 24443332111000124567
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcce-eccccCCCCCHHHHH-hhcCCCCHHHHHHHHHHH
Q 006956 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLS-AMNREYTLSDFRTVVDTL 339 (624)
Q Consensus 262 LL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~-~l~IGlQSgsd~vLk-~M~R~~t~e~~~e~I~~l 339 (624)
+++.+.+ .+ ...++.+. ++|+.++++. |..+ +..+ ++ +|.+|+||+|+++|+ .|||+++.+++.++++.+
T Consensus 93 i~~~l~~-~~--~~~~i~~e-srpd~i~~e~--L~~l-~~aG-~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~ 164 (313)
T TIGR01210 93 IFEKIAQ-RD--NLKEVVVE-SRPEFIDEEK--LEEL-RKIG-VNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELA 164 (313)
T ss_pred HHHHHHh-cC--CcceEEEE-eCCCcCCHHH--HHHH-HHcC-CCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 7777765 32 24566665 6998887654 4443 3444 77 799999999999995 899999999999999999
Q ss_pred HHhCCCCEEEEEEEEcCCC----CCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC
Q 006956 340 IELVPGMQIATDIICGFPG----ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (624)
Q Consensus 340 r~~~pgi~i~td~IvGfPG----ETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~ 396 (624)
+++ |+.+.++||+|+|+ |+.+++.++++++..++ +++.+++++|.|||+++++.
T Consensus 165 ~~~--Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~ 222 (313)
T TIGR01210 165 RKY--GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLW 222 (313)
T ss_pred HHc--CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHH
Confidence 999 99999999999996 55678888999999999 99999999999999987653
No 53
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=1.9e-20 Score=203.44 Aligned_cols=214 Identities=15% Similarity=0.182 Sum_probs=162.9
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCccCCHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~----~GvkeI~l~g~d~~~yg~d~~~~l~eLL~ 264 (624)
+...||.|- =|..+|.||.+...... ....-++.+.+|++.+.. ..++.|+|.|.+.+.... ..+.++++
T Consensus 11 ~~~lYiHiP-FC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~l~~ll~ 86 (390)
T PRK06582 11 DLSIYIHWP-FCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNP---VIVEGIIN 86 (390)
T ss_pred CeEEEEEeC-CCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCH---HHHHHHHH
Confidence 345677763 59999999998654322 112346778888887554 247788888876655433 35677888
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006956 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (624)
Q Consensus 265 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (624)
.+.+.+.......+++. ++|..++... +.. ++..+ +++|+||+||+++++|+.|+|.|+.+++.++++.+++.
T Consensus 87 ~i~~~~~~~~~~eitiE-~nP~~~~~e~--l~~-l~~~G-vnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~-- 159 (390)
T PRK06582 87 KISNLAIIDNQTEITLE-TNPTSFETEK--FKA-FKLAG-INRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTI-- 159 (390)
T ss_pred HHHHhCCCCCCCEEEEE-eCCCcCCHHH--HHH-HHHCC-CCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHh--
Confidence 88765433355678887 7999887643 443 44444 79999999999999999999999999999999999998
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-----CCC-HHHHHHHHHHHHHHHH
Q 006956 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----KVP-SAVVKKRSRELTSVFE 415 (624)
Q Consensus 345 gi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-----~vp-~~~~~~R~~~L~~l~~ 415 (624)
+..++.|+|+|+||||.++++++++.+.+++++++.++.+++.||||++++. .+| +++..+......+...
T Consensus 160 ~~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 236 (390)
T PRK06582 160 FPRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLE 236 (390)
T ss_pred CCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999998753 233 4444444444444444
No 54
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=1.6e-20 Score=202.81 Aligned_cols=189 Identities=17% Similarity=0.252 Sum_probs=145.4
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHH-HHHHHH----CCCcEEEEeecCCCCCCCCccCCHHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGR-VRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~E-I~~L~~----~GvkeI~l~g~d~~~yg~d~~~~l~eLL~ 264 (624)
...||.|-- |+++|.||........ ....-++.+++| ++.+.. ..+..|+|.|.+.+.... ..+.+|++
T Consensus 7 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~---~~l~~ll~ 82 (370)
T PRK06294 7 LALYIHIPF-CTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPP---ALIQDILK 82 (370)
T ss_pred eEEEEEeCC-ccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCH---HHHHHHHH
Confidence 345666643 9999999987654211 111125666777 544332 235677777765544322 35677777
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006956 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (624)
Q Consensus 265 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (624)
.|... ....+++. ++|..+++.. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.+++.
T Consensus 83 ~i~~~----~~~eit~E-~~P~~~~~~~--l~-~l~~~G-~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~-- 151 (370)
T PRK06294 83 TLEAP----HATEITLE-ANPENLSESY--IR-ALALTG-INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEH-- 151 (370)
T ss_pred HHHhC----CCCeEEEE-eCCCCCCHHH--HH-HHHHCC-CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--
Confidence 77542 35678885 8999887654 43 344444 79999999999999999999999999999999999999
Q ss_pred CC-EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC
Q 006956 345 GM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 345 gi-~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~ 395 (624)
|+ .++.|+|+|+||||.++|.++++++.+++++++.++.++|.||||+++.
T Consensus 152 g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~ 203 (370)
T PRK06294 152 GFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKH 203 (370)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHH
Confidence 98 4999999999999999999999999999999999999999999999874
No 55
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.85 E-value=2.2e-20 Score=182.30 Aligned_cols=194 Identities=36% Similarity=0.552 Sum_probs=155.8
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCC-----CcEEEEeecCCCCCCCCccCCHHHHHHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~G-----vkeI~l~g~d~~~yg~d~~~~l~eLL~~l~ 267 (624)
.+++.+++||+++|.||..+...|+.+..+++++.++++.+.+.| ++.+.|.|.+...... ..+.++++.+.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~---~~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSP---EQLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCH---HHHHHHHHHHH
Confidence 467899999999999999887655567778999999999997665 3667777766554422 14678888888
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC-C
Q 006956 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-M 346 (624)
Q Consensus 268 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg-i 346 (624)
+.........+.+. +++..+++.. +..+.+ .+ ...+.++++|+++++++.++++.+.+++.++++.++++ | +
T Consensus 79 ~~~~~~~~~~~~~~-tn~~~~~~~~--~~~l~~-~~-~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 151 (216)
T smart00729 79 EILGLADDVEITIE-TRPGTLTEEL--LEALKE-AG-VNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPI 151 (216)
T ss_pred HhCCCCCCeEEEEE-eCcccCCHHH--HHHHHH-cC-CCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHh--CCc
Confidence 75421002344444 5665555543 444443 33 45899999999999999999999999999999999999 8 8
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC
Q 006956 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (624)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~ 396 (624)
.+.+.+|+|+|+++.+++.++++++.+++++.+.+++|.|.||||++.++
T Consensus 152 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 152 KVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 99999999999999999999999999999999999999999999999887
No 56
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.85 E-value=1.2e-19 Score=189.74 Aligned_cols=198 Identities=19% Similarity=0.236 Sum_probs=150.7
Q ss_pred EEEEEe-CCCCCCCCCCcccCccC---C-CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHH
Q 006956 193 VEILPI-NVGCLGACTYCKTKHAR---G-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (624)
Q Consensus 193 ~a~I~i-srGCp~~CsFC~ip~~r---G-~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~ 267 (624)
.+.+.+ |+||+++|.||..+... + ..+.+++++|+++++.+.+.|++++.|++....... ..+.++++.+.
T Consensus 29 ~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~----~~~~~~~~~i~ 104 (296)
T TIGR00433 29 CTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKD----REFMEYVEAMV 104 (296)
T ss_pred EEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCCh----HHHHHHHHHHH
Confidence 345565 99999999999987654 2 367789999999999999999999877643222111 23355666665
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006956 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 268 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (624)
+.....+. .+. ++...++++ ..+.++..+ +..+.+++| +++++++.++++++.+++.++++.++++ |+.
T Consensus 105 ~~~~~~~i---~~~-~~~g~~~~e---~l~~Lk~aG-~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~--Gi~ 173 (296)
T TIGR00433 105 QIVEEMGL---KTC-ATLGLLDPE---QAKRLKDAG-LDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKA--GLK 173 (296)
T ss_pred HHHHhCCC---eEE-ecCCCCCHH---HHHHHHHcC-CCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHc--CCE
Confidence 43221122 222 233344443 334444444 789999999 8999999999999999999999999999 999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 006956 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (624)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R 406 (624)
+.+++|+|+ +||.+++.++++++.+++++.+.++.|.|.||||++..+.++.++..+.
T Consensus 174 v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ 231 (296)
T TIGR00433 174 VCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKT 231 (296)
T ss_pred EEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHH
Confidence 999999998 9999999999999999999999999999999999988766665443333
No 57
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.85 E-value=4.5e-20 Score=196.89 Aligned_cols=199 Identities=17% Similarity=0.239 Sum_probs=153.0
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---------cCCHHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILL 263 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~---------~~~l~eLL 263 (624)
..+|.+|+||+++|.||.++...|..+++++|+|+++++.+.+.|++++.|+|++...+..+. ..++.+++
T Consensus 13 ~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i 92 (336)
T PRK06245 13 NVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYL 92 (336)
T ss_pred ceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 357899999999999999998888888999999999999999999999999987665543211 02345666
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC---CCCHHHHHHHHHHHH
Q 006956 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLI 340 (624)
Q Consensus 264 ~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R---~~t~e~~~e~I~~lr 340 (624)
+++.+... .+-.+..+++..+++.. +..+.+ .+ ..+++++||+++.+++.|+| +.+.++.++.++.++
T Consensus 93 ~~i~~~~~----~~g~~~~~~~~~lt~e~--i~~Lk~-ag--~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~ 163 (336)
T PRK06245 93 YDLCELAL----EEGLLPHTNAGILTREE--MEKLKE-VN--ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAG 163 (336)
T ss_pred HHHHHHHh----hcCCCccccCCCCCHHH--HHHHHH-hC--CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHH
Confidence 66655322 11112236676666543 333333 22 35788899999999988865 446788899999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC-----CCeEEEEEeeeCCCCccccCCCCCHHHH
Q 006956 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVV 403 (624)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~-----~~~v~i~~ysP~PGTpa~~~~~vp~~~~ 403 (624)
+. |+.+.+++|+|+ |||.+++.+++.++++++ ++.+.+++|+|.||||+..++.++.++.
T Consensus 164 ~~--Gi~~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~ 228 (336)
T PRK06245 164 KL--KIPFTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEM 228 (336)
T ss_pred Hc--CCceeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHH
Confidence 88 999999999998 999999999999999985 6788899999999999977665555443
No 58
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.85 E-value=6.1e-20 Score=201.86 Aligned_cols=189 Identities=17% Similarity=0.217 Sum_probs=143.4
Q ss_pred ceEEEEEeCCCCCCCCCCcccCcc-CCCcc-cCCHHHHHHHHHHHHHCC--CcEEEEeecCCCCCCCCccCCHHHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHA-RGHLG-SYTVESLVGRVRTVIADG--VKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~-rG~~R-sr~~e~Iv~EI~~L~~~G--vkeI~l~g~d~~~yg~d~~~~l~eLL~~l 266 (624)
+...||.|-- |+++|+||.++.. .+..+ ...++.+++||+.+.+.| +..|+|.|.+.+.. . ..|.++++.+
T Consensus 52 ~~~LYvHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l-~---~~L~~ll~~i 126 (433)
T PRK08629 52 KYMLYAHVPF-CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL-E---DELAKTLELA 126 (433)
T ss_pred cEEEEEEeCC-ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC-H---HHHHHHHHHH
Confidence 4556777754 9999999998754 22222 224899999999877654 45677776555442 2 3577888888
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC-C
Q 006956 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP-G 345 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p-g 345 (624)
.+.+ ....+++. ++|+.++++. +. .++.. +++++||+||+|+++|+.|+|.|+.++..++++.++++.. .
T Consensus 127 ~~~f---~i~eis~E-~~P~~lt~e~--L~-~l~~~--vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~ 197 (433)
T PRK08629 127 KKLF---SIKEVSCE-SDPNHLDPPK--LK-QLKGL--IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLF 197 (433)
T ss_pred HHhC---CCceEEEE-eCcccCCHHH--HH-HHHHh--CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccC
Confidence 7655 34567775 7999988754 43 33333 8999999999999999999999987666555555554311 3
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccc
Q 006956 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (624)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~ 393 (624)
..++.|+|+||||||++++.++++++.++++++++++++++.|||+..
T Consensus 198 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 198 PIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred CeEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhh
Confidence 468899999999999999999999999999999999999999999754
No 59
>PLN02428 lipoic acid synthase
Probab=99.84 E-value=1.7e-19 Score=191.31 Aligned_cols=208 Identities=19% Similarity=0.223 Sum_probs=160.1
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHHhC
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~~l 270 (624)
...++.+++||+++|.||.++..+++.+.+ ++++.+.++.+.+.|+++++|++.+...+ .|.+ ..+.++++.|.+..
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d-~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~ 179 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPD-PDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLK 179 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCC-hhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhC
Confidence 455789999999999999999877766654 78888888888889999999999875554 2322 46888999998754
Q ss_pred CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCCEEE
Q 006956 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIA 349 (624)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~-R~~t~e~~~e~I~~lr~~~pgi~i~ 349 (624)
+ ++++.++.|+.+.+ +++.+.+..++ +..++.++|+ ++++++.|+ ++++.++++++++.+++.+||+.+.
T Consensus 180 P-----~i~Ie~L~pdf~~d--~elL~~L~eAG-~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tk 250 (349)
T PLN02428 180 P-----EILVEALVPDFRGD--LGAVETVATSG-LDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTK 250 (349)
T ss_pred C-----CcEEEEeCccccCC--HHHHHHHHHcC-CCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 3 56777777765522 22334444454 6789999997 889999999 6899999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH
Q 006956 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 416 (624)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~ 416 (624)
++||+|| |||++|+.++++++++++++.+.+.+|. .|...-.... -+++++ ++++.+...+
T Consensus 251 Sg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL-~Ps~~h~~v~~~v~p~~----f~~~~~~~~~ 312 (349)
T PLN02428 251 TSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL-RPTKRHLPVKEYVTPEK----FEFWREYGEE 312 (349)
T ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc-CCCcceeeeecccCHHH----HHHHHHHHHH
Confidence 9999999 9999999999999999999999998885 4432211222 466644 4445555544
No 60
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.83 E-value=3.6e-19 Score=197.39 Aligned_cols=213 Identities=19% Similarity=0.287 Sum_probs=161.8
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCC---cccCCHHHHHHHHHHHHH-----CCCcEEEEeecCCCCCCCCccCCHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILL 263 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~---~Rsr~~e~Iv~EI~~L~~-----~GvkeI~l~g~d~~~yg~d~~~~l~eLL 263 (624)
...||.|-. |+++|.||..+...+. .+...++.+++|++.+.. .+++.|+|.|.+.+.... ..+.+|+
T Consensus 50 ~~lYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~---~~l~~ll 125 (455)
T TIGR00538 50 LSLYVHIPF-CHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSP---EQISRLM 125 (455)
T ss_pred eEEEEEeCC-ccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCH---HHHHHHH
Confidence 346777754 9999999998765432 233468999999998753 378889998877665433 3678888
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 006956 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (624)
Q Consensus 264 ~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~ 343 (624)
+.+.+.++......+.+. ++|..+++.. +. .++..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 126 ~~i~~~~~~~~~~eitie-~np~~l~~e~--l~-~lk~~G-~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~- 199 (455)
T TIGR00538 126 KLIRENFPFNADAEISIE-IDPRYITKDV--ID-ALRDEG-FNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREA- 199 (455)
T ss_pred HHHHHhCCCCCCCeEEEE-eccCcCCHHH--HH-HHHHcC-CCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc-
Confidence 888876542233456666 7898887654 33 344444 89999999999999999999999999999999999999
Q ss_pred CCCE-EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCC-ccccC-C--CC-CHHHHHHHHHHHHHHHH
Q 006956 344 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT-PAARM-K--KV-PSAVVKKRSRELTSVFE 415 (624)
Q Consensus 344 pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGT-pa~~~-~--~v-p~~~~~~R~~~L~~l~~ 415 (624)
|+. +..|+|+|+||||.+++.++++++.+++++++.++.|++.|++ +..+. . .+ +++++.+..+.+.+...
T Consensus 200 -G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 200 -GFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred -CCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 985 8999999999999999999999999999999999999988875 33221 1 23 34555544444444443
No 61
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.83 E-value=5e-19 Score=196.07 Aligned_cols=189 Identities=17% Similarity=0.241 Sum_probs=150.5
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCC-C--cccCCHHHHHHHHHHHHHC-----CCcEEEEeecCCCCCCCCccCCHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARG-H--LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPIL 262 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG-~--~Rsr~~e~Iv~EI~~L~~~-----GvkeI~l~g~d~~~yg~d~~~~l~eL 262 (624)
+...||.|-. |+++|.||....... + .....++.+++||+.+.+. ++..|+|.|.+.+.+.. ..+.+|
T Consensus 50 ~~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~---~~l~~l 125 (453)
T PRK13347 50 PVSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNP---DQFERL 125 (453)
T ss_pred ceEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCH---HHHHHH
Confidence 3457888877 999999998764322 1 1122378999999976542 56789998877766543 467899
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006956 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 263 L~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (624)
++.+.+.++......+.+. ++|..+++.. +. .++..+ +++++||+||+++++|+.|+|.++.+++.++++.++++
T Consensus 126 l~~i~~~~~~~~~~e~tie-~~p~~lt~e~--l~-~L~~~G-~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~ 200 (453)
T PRK13347 126 MAALRDAFDFAPEAEIAVE-IDPRTVTAEM--LQ-ALAALG-FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA 200 (453)
T ss_pred HHHHHHhCCCCCCceEEEE-eccccCCHHH--HH-HHHHcC-CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999876543233466665 7999887654 33 344444 89999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCC
Q 006956 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (624)
Q Consensus 343 ~pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGT 390 (624)
|+. +..|+|+|+||||.+++.++++++.+++++++.++.|+..|++
T Consensus 201 --G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~ 247 (453)
T PRK13347 201 --GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSR 247 (453)
T ss_pred --CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccch
Confidence 985 8999999999999999999999999999999999999866654
No 62
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.83 E-value=4.6e-19 Score=196.42 Aligned_cols=187 Identities=20% Similarity=0.261 Sum_probs=150.0
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC---cccCCHHHHHHHHHHHHH-----CCCcEEEEeecCCCCCCCCccCCHHHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~---~Rsr~~e~Iv~EI~~L~~-----~GvkeI~l~g~d~~~yg~d~~~~l~eLL~ 264 (624)
..||.|-. |+++|+||..+...+. ...+.++.+++|++.+.+ .++..|.|.|.+.+.... ..+.+|++
T Consensus 51 ~LYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~---~~l~~ll~ 126 (453)
T PRK09249 51 SLYVHIPF-CRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSP---EQLRRLMA 126 (453)
T ss_pred EEEEEeCC-ccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCH---HHHHHHHH
Confidence 45666643 9999999988755332 233467999999997665 257788888876655422 46788898
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006956 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (624)
Q Consensus 265 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (624)
.+.+.++......+.+. ++|..++++. +. .++..+ +++|+||+||+++++|+.|+|.++.+++.++++.++++
T Consensus 127 ~l~~~~~~~~~~e~tie-~np~~lt~e~--l~-~l~~aG-~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~-- 199 (453)
T PRK09249 127 LLREHFNFAPDAEISIE-IDPRELDLEM--LD-ALRELG-FNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAAREL-- 199 (453)
T ss_pred HHHHhCCCCCCCEEEEE-ecCCcCCHHH--HH-HHHHcC-CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHc--
Confidence 88876542234567776 7998887654 43 444444 89999999999999999999999999999999999999
Q ss_pred CC-EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCC
Q 006956 345 GM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (624)
Q Consensus 345 gi-~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGT 390 (624)
|+ .+.+|+|+|+||||.++++++++++.+++++++.++.|++.|++
T Consensus 200 G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~ 246 (453)
T PRK09249 200 GFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWL 246 (453)
T ss_pred CCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhh
Confidence 98 89999999999999999999999999999999999999977765
No 63
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.80 E-value=1.1e-18 Score=184.15 Aligned_cols=197 Identities=16% Similarity=0.272 Sum_probs=147.6
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
.+|.+++||+++|.||......+ +.+.+++|+|+++++...+.|+++|.|+|.+...+.. ..+.++++.|.+..+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDI---EYYEELFRAIKQEFP 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 46889999999999999876544 3567899999999999999999999999765443322 346888888887643
Q ss_pred CCCCceEEEeecCCcchh---H----HHHHHHHHHhCCCcceec-cccCCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHh
Q 006956 272 PDGSTMLRIGMTNPPFIL---E----HLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 272 ~~~~~~iri~~~~p~~i~---~----~l~el~~l~~~~~v~~~l-~IGlQSgsd~vLk~M-~R~~t~e~~~e~I~~lr~~ 342 (624)
...+..+ .+.++. . ...+..+.++.++ +..+ +.|+|++++++++.+ .++.+.++++++++.+++.
T Consensus 84 --~i~~~~~---s~~e~~~~~~~~g~~~~e~l~~LkeAG-l~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 84 --DVHIHAF---SPMEVYFLAKNEGLSIEEVLKRLKKAG-LDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred --CceEEec---CHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 2222222 221110 0 0123344455555 5666 579999999999888 5677999999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeC----CCCc-cccC--CCCCHHH
Q 006956 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTP-AARM--KKVPSAV 402 (624)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~----PGTp-a~~~--~~vp~~~ 402 (624)
|+.+.+.+|+|+| ||.+|+.+++.++++++.+..++..|.|. +||| +... +..+..+
T Consensus 158 --Gi~~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e 221 (309)
T TIGR00423 158 --GIPTTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGID 221 (309)
T ss_pred --CCCceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHH
Confidence 9999999999986 89999999999999999988888787775 4788 5543 3444433
No 64
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.80 E-value=4.3e-18 Score=186.10 Aligned_cols=215 Identities=21% Similarity=0.288 Sum_probs=167.7
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCC---cccCCHHHHHHHHHHHHHCC-----CcEEEEeecCCCCCCCCccCCHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPIL 262 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~---~Rsr~~e~Iv~EI~~L~~~G-----vkeI~l~g~d~~~yg~d~~~~l~eL 262 (624)
+...||.| -=|...|.||..+..... ....-.+.+++|++...... ++.|+|.|++.+.... ..+..|
T Consensus 34 ~~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~---~~l~~l 109 (416)
T COG0635 34 PLSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSP---EQLERL 109 (416)
T ss_pred ceEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCH---HHHHHH
Confidence 46677777 459999999998754322 22224678888988877642 6678887766555433 468889
Q ss_pred HHHHHHhCC-CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006956 263 LNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341 (624)
Q Consensus 263 L~~l~~~l~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~ 341 (624)
|..|.+.++ ......+.+. ++|..++... +.. ++..+ ++++++||||+++++||.++|.|+.++..++++.+++
T Consensus 110 l~~l~~~~~~~~~~~EitiE-~nP~~~~~e~--~~~-l~~~G-vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~ 184 (416)
T COG0635 110 LKALRELFNDLDPDAEITIE-ANPGTVEAEK--FKA-LKEAG-VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARK 184 (416)
T ss_pred HHHHHHhcccCCCCceEEEE-eCCCCCCHHH--HHH-HHHcC-CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999988773 3345788888 6999887654 433 33444 7899999999999999999999999999999999999
Q ss_pred hCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-C---CCH-HHHHHHHHHHHHHHH
Q 006956 342 LVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K---VPS-AVVKKRSRELTSVFE 415 (624)
Q Consensus 342 ~~pgi-~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~---vp~-~~~~~R~~~L~~l~~ 415 (624)
. |+ .++.|+|+|+|++|.+++.++++.+.+++++++.+|.|+..|+|++++.. + +|+ +.+.++.+...+...
T Consensus 185 ~--g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~ 262 (416)
T COG0635 185 A--GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLE 262 (416)
T ss_pred c--CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHH
Confidence 8 75 58899999999999999999999999999999999999999999999875 3 554 444455555555554
Q ss_pred H
Q 006956 416 A 416 (624)
Q Consensus 416 ~ 416 (624)
+
T Consensus 263 ~ 263 (416)
T COG0635 263 K 263 (416)
T ss_pred H
Confidence 3
No 65
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.79 E-value=1.3e-18 Score=184.78 Aligned_cols=195 Identities=18% Similarity=0.243 Sum_probs=146.6
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC------------CCc-cC
Q 006956 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GV 257 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg------------~d~-~~ 257 (624)
..+|++|+||+++|.||.++..+|. .+.+++|+|+++++.+.+.|++++.+++..-.... .+. ..
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~ 84 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLE 84 (322)
T ss_pred eEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHH
Confidence 4578999999999999999887775 45899999999999999999999999854322211 100 02
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCC----CHHHHH
Q 006956 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----TLSDFR 333 (624)
Q Consensus 258 ~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~----t~e~~~ 333 (624)
.+.++++.+.++.. . +..+++..+++.. +..+. ..+ . .+++.+|++++.+++.|++.+ +.++.+
T Consensus 85 ~~~~~~~~i~~e~~---~----~~~~~~g~lt~e~--l~~Lk-~aG-~-~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l 152 (322)
T TIGR03550 85 YLRELCELALEETG---L----LPHTNPGVMSRDE--LARLK-PVN-A-SMGLMLETTSERLCKGEAHYGSPGKDPAVRL 152 (322)
T ss_pred HHHHHHHHHHHhcC---C----ccccCCCCCCHHH--HHHHH-hhC-C-CCCcchhhhccccccccccCCCCCCCHHHHH
Confidence 34555566654321 1 1124555555543 33333 333 2 468889999999888776655 467899
Q ss_pred HHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC-----CCeEEEEEeeeCCCCccccCCCCCHHH
Q 006956 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAV 402 (624)
Q Consensus 334 e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~-----~~~v~i~~ysP~PGTpa~~~~~vp~~~ 402 (624)
+.++.+++. |+.+.+++|+|+ |||++|+.+++.++++++ +..+.+++|.|.||||+...+.++..+
T Consensus 153 ~~i~~a~~~--Gi~~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e 223 (322)
T TIGR03550 153 ETIEDAGRL--KIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEE 223 (322)
T ss_pred HHHHHHHHc--CCCccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHH
Confidence 999999999 999999999997 999999999999999997 667778999999999998877666543
No 66
>PRK06267 hypothetical protein; Provisional
Probab=99.79 E-value=8.1e-18 Score=180.51 Aligned_cols=188 Identities=19% Similarity=0.264 Sum_probs=146.5
Q ss_pred EEEEEeCCCCC--CCCCCcccCccCC-----CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHH
Q 006956 193 VEILPINVGCL--GACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (624)
Q Consensus 193 ~a~I~isrGCp--~~CsFC~ip~~rG-----~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~ 265 (624)
.+.|..|.+|+ ++|+||..+...+ .++.+++|+|++|++.+.+.|++.+.++|... +.. ..+.++++.
T Consensus 28 ~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~~~---~el~~i~e~ 102 (350)
T PRK06267 28 ERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--YTT---EEINDIAEM 102 (350)
T ss_pred EEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--CCH---HHHHHHHHH
Confidence 45667899999 9999998876433 35688999999999999999999887776532 221 356777777
Q ss_pred HHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006956 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (624)
Q Consensus 266 l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg 345 (624)
+...-. ...++.++.+++. ++. ....+ .+..++||+++++++.++++++.+++.+.++.++++ |
T Consensus 103 I~~~~~--~~~~~s~G~~d~~-------~~~-~~~l~----Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~a--G 166 (350)
T PRK06267 103 IAYIQG--CKQYLNVGIIDFL-------NIN-LNEIE----GVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDL--G 166 (350)
T ss_pred HHHhhC--CceEeecccCCHH-------HHh-hcccc----CceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHc--C
Confidence 765311 1134444433221 111 11222 345689999999999999999999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHH
Q 006956 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (624)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~ 402 (624)
+.+.+++|+|+ |||.+|+.++++++++++++.+.+++|.|.||||++..+.++.++
T Consensus 167 i~v~~g~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e 222 (350)
T PRK06267 167 LKTGITIILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLE 222 (350)
T ss_pred CeeeeeEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHH
Confidence 99999999996 999999999999999999999999999999999998877666644
No 67
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.78 E-value=6.5e-18 Score=188.44 Aligned_cols=187 Identities=21% Similarity=0.255 Sum_probs=148.0
Q ss_pred CCCCC-CCCCccc-------Ccc---------CC-CcccCCHHHHHHHHHHHHHCC--C--cEEEEeecCCCCCCCCccC
Q 006956 200 VGCLG-ACTYCKT-------KHA---------RG-HLGSYTVESLVGRVRTVIADG--V--KEVWLSSEDTGAYGRDIGV 257 (624)
Q Consensus 200 rGCp~-~CsFC~i-------p~~---------rG-~~Rsr~~e~Iv~EI~~L~~~G--v--keI~l~g~d~~~yg~d~~~ 257 (624)
--||+ +|.||-- |.. |+ +.+..|..++.++++++...| + -|+.|.|.+++++..+.
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y-- 153 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDY-- 153 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHH--
Confidence 44995 6999953 211 22 356678999999999999865 3 25689999999886653
Q ss_pred CHHHHHHHHHHhCCC----------------------CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCC
Q 006956 258 NLPILLNAIVAELPP----------------------DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315 (624)
Q Consensus 258 ~l~eLL~~l~~~l~~----------------------~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSg 315 (624)
...+++.+.+.++. .....++++ ++|+.+++.. +..+. ..+ ++++.+|+||+
T Consensus 154 -~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i~~e~--L~~L~-~~G-~~rVslGVQS~ 227 (522)
T TIGR01211 154 -QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYCREEH--IDRML-KLG-ATRVELGVQTI 227 (522)
T ss_pred -HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcCCHHH--HHHHH-HcC-CCEEEEECccC
Confidence 34455544443321 012455665 6999988754 44444 333 79999999999
Q ss_pred CHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHH---cCCCeEEEEEeeeCCCCcc
Q 006956 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE---YKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 316 sd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e---l~~~~v~i~~ysP~PGTpa 392 (624)
++++|+.|||+|+.+++.++++.++++ |+.+..|+|+|+||||.+++.+|++.+.+ ++++.+.++++.+.|||++
T Consensus 228 ~d~VL~~inRght~~~v~~Ai~~lr~~--G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L 305 (522)
T TIGR01211 228 YNDILERTKRGHTVRDVVEATRLLRDA--GLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTEL 305 (522)
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHH
Confidence 999999999999999999999999999 99999999999999999999999999985 8999999999999999999
Q ss_pred ccCC
Q 006956 393 ARMK 396 (624)
Q Consensus 393 ~~~~ 396 (624)
+++.
T Consensus 306 ~~~~ 309 (522)
T TIGR01211 306 YELW 309 (522)
T ss_pred HHHH
Confidence 9763
No 68
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.78 E-value=8.1e-18 Score=180.18 Aligned_cols=190 Identities=17% Similarity=0.308 Sum_probs=146.1
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
..|.+|+||+++|.||......+ +...+++|+|+++++.+.+.|+++|.|+|++.+.+.. ..+.++++.|.+..+
T Consensus 41 ~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~i~~~Ik~~~~ 117 (343)
T TIGR03551 41 RNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG---DFYLDILRAVKEEVP 117 (343)
T ss_pred eccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 35778999999999999865443 2234899999999999999999999999765544322 346788888887644
Q ss_pred CCCCceEEEee-------cCCcchhHHHHHHHHHHhCCCcceecc-ccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHh
Q 006956 272 PDGSTMLRIGM-------TNPPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIEL 342 (624)
Q Consensus 272 ~~~~~~iri~~-------~~p~~i~~~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~M~R~-~t~e~~~e~I~~lr~~ 342 (624)
+..+..++- .+....+++ .+.. ++.++ +.+++ .+.|++++++++.+.++ .+.++++++++.++++
T Consensus 118 --~i~~~~~t~~ei~~~~~~~g~~~~e--~l~~-LkeAG-l~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~ 191 (343)
T TIGR03551 118 --GMHIHAFSPMEVYYGARNSGLSVEE--ALKR-LKEAG-LDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL 191 (343)
T ss_pred --CceEEecCHHHHHHHHHHcCCCHHH--HHHH-HHHhC-cccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc
Confidence 333322210 011112222 2333 33444 66676 57899999999999986 4999999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCC----CCccccC
Q 006956 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARM 395 (624)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~P----GTpa~~~ 395 (624)
|+.+.+.+|+|+| ||.+|+.+++.++++++.++.++..|.|.| |||++..
T Consensus 192 --Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~ 245 (343)
T TIGR03551 192 --GIPTTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLK 245 (343)
T ss_pred --CCcccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccc
Confidence 9999999999986 999999999999999999999999999977 9999853
No 69
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=165.67 Aligned_cols=192 Identities=20% Similarity=0.350 Sum_probs=140.5
Q ss_pred EEEeCCCCCCC--------CCCcccCccCC--CcccCCH-HHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCccCCHHH
Q 006956 195 ILPINVGCLGA--------CTYCKTKHARG--HLGSYTV-ESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPI 261 (624)
Q Consensus 195 ~I~isrGCp~~--------CsFC~ip~~rG--~~Rsr~~-e~Iv~EI~~L~~~--GvkeI~l~g~d~~~yg~d~~~~l~e 261 (624)
.|-..-.||++ |+||....... -.+..|+ +++-++++.+.+. +.+.|...-.-++.|.. .+
T Consensus 27 ~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyAp------ve 100 (312)
T COG1242 27 TLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNTYAP------VE 100 (312)
T ss_pred eccCCCCCCCCCCcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccccCc------HH
Confidence 34455568876 99997654311 1233354 3444444444442 33433332222344422 45
Q ss_pred HHHHHHHh-CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 006956 262 LLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340 (624)
Q Consensus 262 LL~~l~~~-l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr 340 (624)
.|+++.+. +...+...+.++ ++|+.+.++.-++.+-+... ..-++.+|+||.++++|+.+||+|+.+.|.+++.++|
T Consensus 101 vLre~ye~aL~~~~VVGLsIg-TRPDClpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~r 178 (312)
T COG1242 101 VLREMYEQALSEAGVVGLSIG-TRPDCLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLR 178 (312)
T ss_pred HHHHHHHHHhCcCCeeEEeec-CCCCCCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHH
Confidence 55555432 333467788887 89998877654444333332 4679999999999999999999999999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC
Q 006956 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (624)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~ 396 (624)
++ ||.+.+++|+|+||||.+++.+|++.+..++++-+-++++....|||+.++.
T Consensus 179 kr--gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y 232 (312)
T COG1242 179 KR--GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMY 232 (312)
T ss_pred Hc--CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHH
Confidence 99 9999999999999999999999999999999999999999999999998874
No 70
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.76 E-value=2.3e-17 Score=158.70 Aligned_cols=190 Identities=24% Similarity=0.400 Sum_probs=149.1
Q ss_pred EEeCCCCCCCCCCcccCccCCCcccCCH--HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCC
Q 006956 196 LPINVGCLGACTYCKTKHARGHLGSYTV--ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (624)
Q Consensus 196 I~isrGCp~~CsFC~ip~~rG~~Rsr~~--e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~ 273 (624)
+.+++||+++|+||..+...+.....+. +++.+.+......+.+.+.++|.+...+. .+.++++.+.+..+
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~-- 73 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELP-- 73 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCC--
Confidence 3578999999999999877655433333 46666666666778899999887766552 57888888876432
Q ss_pred CCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 006956 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIATDI 352 (624)
Q Consensus 274 ~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~-R~~t~e~~~e~I~~lr~~~pgi~i~td~ 352 (624)
...+++. ++...+++.. +..+... + +..+.++++|+++..++.++ ++.+.+++.+.++.+++. ++.+.+.+
T Consensus 74 -~~~~~i~-T~~~~~~~~~--~~~l~~~-g-~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~ 145 (204)
T cd01335 74 -GFEISIE-TNGTLLTEEL--LKELKEL-G-LDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA--GLGLSTTL 145 (204)
T ss_pred -CceEEEE-cCcccCCHHH--HHHHHhC-C-CceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc--CCCceEEE
Confidence 3556665 5555433322 3334333 2 68999999999999999998 788999999999999999 99999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEEeeeCCCCccccCC-CCCH
Q 006956 353 ICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARMK-KVPS 400 (624)
Q Consensus 353 IvGfPGETeedf~eTl~fl~el~-~~~v~i~~ysP~PGTpa~~~~-~vp~ 400 (624)
|+|.|+++.+++.++++++.+.. ++.+++++|.|.||||++... ..+.
T Consensus 146 i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~~ 195 (204)
T cd01335 146 LVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLELAAPVVPA 195 (204)
T ss_pred EEecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeeeeccccccH
Confidence 99999999999999999999998 999999999999999999443 4443
No 71
>PRK08445 hypothetical protein; Provisional
Probab=99.75 E-value=2.9e-17 Score=175.93 Aligned_cols=191 Identities=16% Similarity=0.198 Sum_probs=143.7
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
.|.+|.||+++|.||......+ ....+++|+|++.++.+.+.|.++|++.|.+...+.. ..+.++++.|.+.+|
T Consensus 45 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~---e~~~~l~~~Ik~~~p- 120 (348)
T PRK08445 45 NINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKI---EWYENLVSHIAQKYP- 120 (348)
T ss_pred ccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4678999999999999876432 2235699999999999999999999999865555433 356889999988765
Q ss_pred CCCceEEEeecCCcchhH----HHHHHHHHHhCCCcceec-cccCCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCCC
Q 006956 273 DGSTMLRIGMTNPPFILE----HLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~~----~l~el~~l~~~~~v~~~l-~IGlQSgsd~vLk~M-~R~~t~e~~~e~I~~lr~~~pgi 346 (624)
...+..++....+.+.. ..++..+.++..+ +.++ ++|+||+++++++.+ +++.+.+++++.++.++++ |+
T Consensus 121 -~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAG-l~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~--Gi 196 (348)
T PRK08445 121 -TITIHGFSAVEIDYIAKISKISIKEVLERLQAKG-LSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLI--GM 196 (348)
T ss_pred -CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcC-CCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHc--CC
Confidence 33333332221222211 0123334445555 4555 699999999999999 7789999999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE-----EeeeCCCCccccC
Q 006956 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS-----QFYPRPGTPAARM 395 (624)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~-----~ysP~PGTpa~~~ 395 (624)
.+.+.+|+|+ +||.+++.+.+.++++++.+..++. .|.| ||||++..
T Consensus 197 ~~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p-~~tpl~~~ 248 (348)
T PRK08445 197 KSTATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQP-DNTPLKEE 248 (348)
T ss_pred eeeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCC-CCCccccc
Confidence 9999999997 6999999999999999987654433 3445 99999753
No 72
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.75 E-value=2.6e-17 Score=176.79 Aligned_cols=195 Identities=17% Similarity=0.210 Sum_probs=149.0
Q ss_pred EEEeCCCCCCCCCCcccCccCC---CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 195 ILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG---~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
+|..+.||+++|+||.+....+ .++ +++|+|+++++...+.|+++|.|++.+...+.. ..+.++++.|.+.+|
T Consensus 51 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~---~~~~e~i~~Ik~~~p 126 (351)
T TIGR03700 51 HLNYTNICVNGCAFCAFQRERGEPGAYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPF---EWYLDMIRTLKEAYP 126 (351)
T ss_pred CcccccccccCCccCceeCCCCCcccCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 5778999999999999875544 233 799999999999999999999999765433221 357788888887654
Q ss_pred CCCCceEEEeecCCcchh-------HHHHHHHHHHhCCCcceecc-ccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHh
Q 006956 272 PDGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIEL 342 (624)
Q Consensus 272 ~~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~M~R~-~t~e~~~e~I~~lr~~ 342 (624)
.+.+....|..+. ...++..+.++.++ +..++ .|+||+++++++.+.++ .+.++++++++.++++
T Consensus 127 -----~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAG-ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~ 200 (351)
T TIGR03700 127 -----DLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAG-LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHEL 200 (351)
T ss_pred -----CceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHc
Confidence 2333322222111 01123233344455 45554 79999999999999886 4678999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeC----CCCccccC--CCCCHHH
Q 006956 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARM--KKVPSAV 402 (624)
Q Consensus 343 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~----PGTpa~~~--~~vp~~~ 402 (624)
|+.+.+.+|+|+ |||.++..+.+..+++++.+..++..|.|. +|||+... +..+..+
T Consensus 201 --Gi~~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e 263 (351)
T TIGR03700 201 --GLKTNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLD 263 (351)
T ss_pred --CCCcceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHH
Confidence 999999999997 999999999999999999999999999999 59999876 5555543
No 73
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.75 E-value=2.7e-17 Score=175.86 Aligned_cols=196 Identities=21% Similarity=0.274 Sum_probs=145.8
Q ss_pred EEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
.+.++.||+++|+||.+....+. ...+++++|+++++.+.+.|+++|.|+|........ ..+.++++.|.+..+
T Consensus 44 ~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~li~~Ik~~~~- 119 (340)
T TIGR03699 44 NINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGL---DYYEDLFRAIKARFP- 119 (340)
T ss_pred ccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 45679999999999986544442 446899999999999999999999998764433221 235678888876543
Q ss_pred CCCceEEEeecCCcchhH-------HHHHHHHHHhCCCcceecc-ccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhC
Q 006956 273 DGSTMLRIGMTNPPFILE-------HLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 343 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~~-------~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~ 343 (624)
...+.. ..+..+.. ..++..+.++.++ +.+++ .|+|+.++++++.+.+ +.+.+++.++++.+++.
T Consensus 120 -~i~~~~---~s~~ei~~~~~~~g~~~~e~l~~Lk~aG-~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~- 193 (340)
T TIGR03699 120 -HIHIHS---FSPVEIVYIAKKEGLSLREVLERLKEAG-LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKL- 193 (340)
T ss_pred -CcCCCC---CCHHHHHHHhccCCCCHHHHHHHHHHcC-CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 222211 12211110 0123444455555 55666 6899999999999965 57999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeC----CCCccccCCCCCHHH
Q 006956 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSAV 402 (624)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~----PGTpa~~~~~vp~~~ 402 (624)
|+.+.+++|+|+ |||.++..+++.++++++.+...+..|.|. +|||+++.+..+.++
T Consensus 194 -Gi~v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e 254 (340)
T TIGR03699 194 -GLPTTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTE 254 (340)
T ss_pred -CCCccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHH
Confidence 999999999996 999999999999999999988788777774 799998776666543
No 74
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.74 E-value=3.3e-17 Score=153.48 Aligned_cols=162 Identities=21% Similarity=0.389 Sum_probs=127.0
Q ss_pred EEeCCCCCCCCCCcccCc--cCCCcccCCHHHHHHHHHHH-HHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 196 LPINVGCLGACTYCKTKH--ARGHLGSYTVESLVGRVRTV-IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 196 I~isrGCp~~CsFC~ip~--~rG~~Rsr~~e~Iv~EI~~L-~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
|++++||+++|.||..+. ..+..+.+++++++++++.+ .+.|.+.+.++|++...+ .++.+++..+.+...
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~- 74 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKK- 74 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTC-
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhc-
Confidence 578999999999999987 45568889999999999999 688888888887766654 346777777776431
Q ss_pred CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHH-HHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 006956 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~-vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td 351 (624)
....+.+. +++....+.. +..+.+.. +.++.+++||.+++ +++.|+++.+.+++.++++.++++ |+.....
T Consensus 75 -~~~~i~~~-t~~~~~~~~~--l~~l~~~~--~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--g~~~~~~ 146 (166)
T PF04055_consen 75 -RGIRISIN-TNGTLLDEEL--LDELKKLG--VDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA--GIPRVII 146 (166)
T ss_dssp -TTEEEEEE-EESTTHCHHH--HHHHHHTT--CSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT--TSETEEE
T ss_pred -cccceeee-ccccchhHHH--HHHHHhcC--ccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc--CCCcEEE
Confidence 23455554 4554443322 44444433 68999999999999 999999999999999999999999 8776789
Q ss_pred EEEcCCCCCHHHHHHHHHHH
Q 006956 352 IICGFPGETDEDFNQTVNLI 371 (624)
Q Consensus 352 ~IvGfPGETeedf~eTl~fl 371 (624)
+|+|+||||+++++++++|+
T Consensus 147 ~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 147 FIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp EEEEBTTTSHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhCcC
Confidence 99999999999999999986
No 75
>PRK08508 biotin synthase; Provisional
Probab=99.73 E-value=2.2e-16 Score=164.48 Aligned_cols=187 Identities=17% Similarity=0.223 Sum_probs=141.6
Q ss_pred eCCCCCCCCCCcccCccCC----CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCC
Q 006956 198 INVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (624)
Q Consensus 198 isrGCp~~CsFC~ip~~rG----~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~ 273 (624)
.+.||+++|.||+.+...+ .++.+++|+|+++++...+.|+++|.+++...... ......+.++++.+++..+
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~-~~~~e~~~ei~~~ik~~~p-- 89 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLD-DKKLEYVAEAAKAVKKEVP-- 89 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCC-cccHHHHHHHHHHHHhhCC--
Confidence 4889999999999876432 35668999999999999999999999864333211 1111345677777766543
Q ss_pred CCce-EEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 006956 274 GSTM-LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352 (624)
Q Consensus 274 ~~~~-iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~ 352 (624)
+..+ ...+ .++++ .+..+. .++ +..+++++|+ ++++++.+..+++.++..+.++.+++. |+.+.+.+
T Consensus 90 ~l~i~~s~G-----~~~~e--~l~~Lk-~aG-ld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~sg~ 157 (279)
T PRK08508 90 GLHLIACNG-----TASVE--QLKELK-KAG-IFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEA--GLGLCSGG 157 (279)
T ss_pred CcEEEecCC-----CCCHH--HHHHHH-HcC-CCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHc--CCeeccee
Confidence 2221 1222 12222 244333 344 7899999999 478888888889999999999999999 99999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHH
Q 006956 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 401 (624)
Q Consensus 353 IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~ 401 (624)
|+|+ |||.+|..+++.++++++++.+-++.|.|.||||+.. +..+.+
T Consensus 158 I~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~-~~~~~~ 204 (279)
T PRK08508 158 IFGL-GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA-PTLSAD 204 (279)
T ss_pred EEec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC-CCCCHH
Confidence 9997 9999999999999999999999999999999999864 344443
No 76
>PLN02389 biotin synthase
Probab=99.71 E-value=1.1e-15 Score=165.31 Aligned_cols=195 Identities=16% Similarity=0.238 Sum_probs=145.8
Q ss_pred EEEEEe-CCCCCCCCCCcccCccC--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-cCCHHHHHHHH
Q 006956 193 VEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAI 266 (624)
Q Consensus 193 ~a~I~i-srGCp~~CsFC~ip~~r--G--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~-~~~l~eLL~~l 266 (624)
...+.+ +.||+++|.||...... + +++.+++|+|+++++.+.+.|+++|.++..-.+..+.+. ...+.++++.+
T Consensus 83 ~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i 162 (379)
T PLN02389 83 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI 162 (379)
T ss_pred EEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH
Confidence 345566 89999999999986432 2 255689999999999999999999988632111223221 12445556665
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006956 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (624)
++ . +. .+ . .....++++. +..+. .++ +.++++.+++ +++..+.+..+++.+++++.++.+++. |+
T Consensus 163 k~-~---~l-~i--~-~s~G~l~~E~--l~~Lk-eAG-ld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~--Gi 227 (379)
T PLN02389 163 RG-M---GM-EV--C-CTLGMLEKEQ--AAQLK-EAG-LTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREA--GI 227 (379)
T ss_pred hc-C---Cc-EE--E-ECCCCCCHHH--HHHHH-HcC-CCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHc--CC
Confidence 42 1 21 22 2 2222333322 44333 444 6889999999 688899888889999999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHc--CCCeEEEEEeeeCCCCccccCCCCCHHHH
Q 006956 347 QIATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVV 403 (624)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~el--~~~~v~i~~ysP~PGTpa~~~~~vp~~~~ 403 (624)
.+.+.+|+|+ |||.+|..+++.+++++ .++.+.++.|.|.||||+++.+.++..+.
T Consensus 228 ~v~sg~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~ 285 (379)
T PLN02389 228 SVCSGGIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEM 285 (379)
T ss_pred eEeEEEEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHH
Confidence 9999999999 99999999999999999 57899999999999999998877776543
No 77
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.66 E-value=4.5e-15 Score=160.60 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=146.9
Q ss_pred EEEEeCCCCCCCCCCcccCccCC-CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 194 EILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
+.|.+|.+|+++|.||......+ ..+..++++|+++++.+.+.|+++|.|++...... .+ ...+.++++.|.+.++
T Consensus 76 ~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~~~i~~Ik~~~p- 152 (371)
T PRK09240 76 TPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK-VG-VDYIRRALPIAREYFS- 152 (371)
T ss_pred eceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC-
Confidence 44667999999999999865433 24678999999999999999999999987543321 11 1345666777765443
Q ss_pred CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCCE-E
Q 006956 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ-I 348 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~---R~~t~e~~~e~I~~lr~~~pgi~-i 348 (624)
.+.+. ..| ++. +++..+ +..+ +.++++++||.|++.++.+. ++++.++.++.++.++++ |+. +
T Consensus 153 ----~i~i~-~g~--lt~--e~l~~L-k~aG-v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~v 219 (371)
T PRK09240 153 ----SVSIE-VQP--LSE--EEYAEL-VELG-LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRA--GIRKI 219 (371)
T ss_pred ----Cceec-cCC--CCH--HHHHHH-HHcC-CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHc--CCCee
Confidence 23332 233 232 224333 3444 78999999999999999995 578999999999999999 995 9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCC------eEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFP------QVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~------~v~i~~ysP~PGTpa~~~~~vp~~~~~~R 406 (624)
.+++|+|+ ||+.+|..+++..+++++.. .+.+..|.|.|| |+...+.+++.+..+.
T Consensus 220 ~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ 281 (371)
T PRK09240 220 GLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQL 281 (371)
T ss_pred ceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHH
Confidence 99999999 57999999999888888753 678889999999 8876667887655443
No 78
>PRK15108 biotin synthase; Provisional
Probab=99.64 E-value=1.7e-14 Score=154.55 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=144.1
Q ss_pred EEEEe-CCCCCCCCCCcccCccC--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 194 EILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 194 a~I~i-srGCp~~CsFC~ip~~r--G--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
..+.+ |.+|+.+|.||.....+ + +.+..++|+|++.++.+.+.|+++|.+.+........+ -..+.++++.+++
T Consensus 44 ~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~-~e~i~~~i~~ik~ 122 (345)
T PRK15108 44 TLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERD-MPYLEQMVQGVKA 122 (345)
T ss_pred EeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcch-HHHHHHHHHHHHh
Confidence 44555 99999999999886422 2 24457999999999999999999997754311111111 1245666776654
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (624)
. +. .+.++ ...++.. .+.++. .++ ..++++.++| +++....+..+++.++.++.++.+++. |+.+
T Consensus 123 -~---~i-~v~~s---~G~ls~e--~l~~Lk-eAG-ld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~--G~~v 187 (345)
T PRK15108 123 -M---GL-ETCMT---LGTLSES--QAQRLA-NAG-LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GIKV 187 (345)
T ss_pred -C---CC-EEEEe---CCcCCHH--HHHHHH-HcC-CCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHc--CCce
Confidence 2 22 22222 1123332 234333 344 6899999999 899999898889999999999999999 9999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHc--CCCeEEEEEeeeCCCCccccCCCCCHHHH
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVV 403 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el--~~~~v~i~~ysP~PGTpa~~~~~vp~~~~ 403 (624)
.+.+|+|+ |||.+|..+.+..++++ ..+.+.++.|.|.||||+...+.+++.+.
T Consensus 188 ~sg~i~Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~ 243 (345)
T PRK15108 188 CSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDF 243 (345)
T ss_pred eeEEEEeC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHH
Confidence 99999998 99999999999999999 67889999999999999988777776543
No 79
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.62 E-value=1.1e-14 Score=155.39 Aligned_cols=215 Identities=20% Similarity=0.215 Sum_probs=157.2
Q ss_pred eEEEEEeCCCCCC-CCCCcccC------ccC-C---------CcccCCHHHHHHHHHHHHHCCC---c-EEEEeecCCCC
Q 006956 192 FVEILPINVGCLG-ACTYCKTK------HAR-G---------HLGSYTVESLVGRVRTVIADGV---K-EVWLSSEDTGA 250 (624)
Q Consensus 192 ~~a~I~isrGCp~-~CsFC~ip------~~r-G---------~~Rsr~~e~Iv~EI~~L~~~Gv---k-eI~l~g~d~~~ 250 (624)
.++.+.--.|||+ +|.||--. ... | +.+.-|-.++...+++|...|. + |+.|.|..|++
T Consensus 67 VVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta 146 (515)
T COG1243 67 VVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTA 146 (515)
T ss_pred EEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccC
Confidence 3444555689998 99999654 211 1 1234467888889999988764 2 78899998887
Q ss_pred CCCCccCCH-HHHHHHHH----------HhCC--CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCH
Q 006956 251 YGRDIGVNL-PILLNAIV----------AELP--PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317 (624)
Q Consensus 251 yg~d~~~~l-~eLL~~l~----------~~l~--~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd 317 (624)
...+....| ...++++. ..-. ......++++ ++|+.+.+.. +..|++.+ ++.+.+|+||..|
T Consensus 147 ~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE-TRPD~~~ee~--ld~mlkyG--~TrVELGVQSiyd 221 (515)
T COG1243 147 LSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE-TRPDYIDEEH--LDQMLKYG--VTRVELGVQSIYD 221 (515)
T ss_pred CCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEe-cCccccCHHH--HHHHHhcC--CcEEEEeeeeHHH
Confidence 655432222 22223332 1000 0112347776 8999998754 66666554 7999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC---CCeEEEEEeeeCCCCcccc
Q 006956 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK---FPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 318 ~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~---~~~v~i~~ysP~PGTpa~~ 394 (624)
+||+.++||||.+++.++.+.++++ |+.+..++|.|+||-+.+--.+++..+-+.+ +|.+.|++-...+||++++
T Consensus 222 ~Vl~~~~RGHtvedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~ 299 (515)
T COG1243 222 DVLERTKRGHTVEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYE 299 (515)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhc--CcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHH
Confidence 9999999999999999999999999 9999999999999988776666666666555 8999999999999999999
Q ss_pred CC------CCCHHHHHHHHHHHHHH
Q 006956 395 MK------KVPSAVVKKRSRELTSV 413 (624)
Q Consensus 395 ~~------~vp~~~~~~R~~~L~~l 413 (624)
|+ ....++..+....+..+
T Consensus 300 mwk~G~Ykpy~~EEaVeli~~i~~~ 324 (515)
T COG1243 300 MWKRGLYKPYTTEEAVELIVEIYRL 324 (515)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHh
Confidence 86 25667666666555533
No 80
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.60 E-value=3.3e-14 Score=153.57 Aligned_cols=198 Identities=12% Similarity=0.142 Sum_probs=144.9
Q ss_pred EEEEeCCCCCCCCCCcccCccCC-CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 194 EILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
+.+..+.+|+++|.||......+ .....++|+|+++++.+.+.|+++|.++|...... .+ ...+.++++.+.+..+
T Consensus 75 ~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~eii~~Ik~~~p- 151 (366)
T TIGR02351 75 TPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKA-AG-VEYIAEAIKLAREYFS- 151 (366)
T ss_pred eeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC-
Confidence 44568999999999999864322 22456899999999999999999999986433222 11 1346777777766443
Q ss_pred CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCCE-E
Q 006956 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ-I 348 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~---R~~t~e~~~e~I~~lr~~~pgi~-i 348 (624)
.+.+. +.| ++. +++..+. ..+ ..++++++||.+++.++.|+ +.++.++.++.++.++++ |+. +
T Consensus 152 ----~i~Ie-i~~--lt~--e~~~~Lk-~aG-v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~v 218 (366)
T TIGR02351 152 ----SLAIE-VQP--LNE--EEYKKLV-EAG-LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA--GMRKI 218 (366)
T ss_pred ----ccccc-ccc--CCH--HHHHHHH-HcC-CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc--CCCee
Confidence 12222 222 333 2244333 344 68999999999999999987 678999999999999999 997 8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCC------CeEEEEEeeeCCCCccccCCCCCHHHHHHHHHH
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKF------PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 409 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~------~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~ 409 (624)
.+++|+|+| |+.++..+++..++.++. ..+.+..+.|.+| |+...+.+++.+..+....
T Consensus 219 ~~g~i~Gl~-e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~ 283 (366)
T TIGR02351 219 GIGALLGLD-DWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICA 283 (366)
T ss_pred ceeEEEeCc-hhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHH
Confidence 999999996 578887787777777754 5778888999999 8765557887665555433
No 81
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.57 E-value=4.9e-14 Score=152.58 Aligned_cols=188 Identities=19% Similarity=0.281 Sum_probs=139.7
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
.|++|.+|+.+|.||.+....+ .....++|+|++.++.+.+.|+++|.|+|..-.... + ...+.++++.+++.++
T Consensus 63 ~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~-~-~e~~~~~i~~ik~~~~- 139 (371)
T PRK07360 63 NINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD-S-LEFYLEILEAIKEEFP- 139 (371)
T ss_pred CcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC-c-HHHHHHHHHHHHHhCC-
Confidence 4677999999999999865432 222489999999999999999999999975333221 0 1246778888876543
Q ss_pred CCCceEEEeecCC----------cchhHHHHHHHHHHhCCCcceecc-ccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHH
Q 006956 273 DGSTMLRIGMTNP----------PFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLI 340 (624)
Q Consensus 273 ~~~~~iri~~~~p----------~~i~~~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~M~R~-~t~e~~~e~I~~lr 340 (624)
.+.+....| ....+ +.+.. ++.+++ .+++ -+-+..++++.+.+..+ .+.+++++.++.++
T Consensus 140 ----~i~i~a~s~~ei~~~~~~~G~~~~--e~l~~-LkeAGl-d~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~ 211 (371)
T PRK07360 140 ----DIHLHAFSPMEVYFAAREDGLSYE--EVLKA-LKDAGL-DSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAH 211 (371)
T ss_pred ----CcceeeCCHHHHHHHHhhcCCCHH--HHHHH-HHHcCC-CcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 223322211 11122 12333 344553 4444 56777888998888765 58999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCC----CCccccCC
Q 006956 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARMK 396 (624)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~P----GTpa~~~~ 396 (624)
+. |+.+.+.+|+|+ |||.+|..+.+.++++++++..+|..|.|.| |||+....
T Consensus 212 ~~--Gl~~~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~ 268 (371)
T PRK07360 212 KL--GLPTTSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERG 268 (371)
T ss_pred Hc--CCCceeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCcccccc
Confidence 99 999999999998 9999999999999999999999999999865 99998654
No 82
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.57 E-value=1.4e-13 Score=144.56 Aligned_cols=193 Identities=21% Similarity=0.327 Sum_probs=145.6
Q ss_pred EEEEEeCCCC-CCCCCCcccCccC--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHH
Q 006956 193 VEILPINVGC-LGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (624)
Q Consensus 193 ~a~I~isrGC-p~~CsFC~ip~~r--G--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~ 267 (624)
...|.+..|| |.+|.||...... | .+..+++++|+++++...+.|+..+.++..--+ ++++. ..+.+.++.+.
T Consensus 51 ~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~-~~i~~~v~~Vk 128 (335)
T COG0502 51 STLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDM-EEVVEAIKAVK 128 (335)
T ss_pred EEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccH-HHHHHHHHHHH
Confidence 3566776665 9999999886533 2 356788999999999999999766666543222 22221 34556666665
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006956 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 268 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (624)
+.+. -...+.++++ ++.. +.++. .++ ..+...-++| |++..+.+.-+++.++-.+.++.++++ |+.
T Consensus 129 ~~~~--le~c~slG~l-----~~eq--~~~L~-~aG-vd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~--Gi~ 194 (335)
T COG0502 129 EELG--LEVCASLGML-----TEEQ--AEKLA-DAG-VDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREA--GIE 194 (335)
T ss_pred HhcC--cHHhhccCCC-----CHHH--HHHHH-HcC-hhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHc--CCc
Confidence 4432 1123334422 2221 33333 344 5778889999 999999999999999999999999999 999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEEeeeCCCCccccCCCCCHHH
Q 006956 348 IATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARMKKVPSAV 402 (624)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~el~-~~~v~i~~ysP~PGTpa~~~~~vp~~~ 402 (624)
+.+..|+|+ |||.+|-.+.+.++.++. ++.|-|+.|.|.||||+.+.+.++.-+
T Consensus 195 vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e 249 (335)
T COG0502 195 VCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFE 249 (335)
T ss_pred cccceEecC-CCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHH
Confidence 999999999 999999999999999998 999999999999999999988777643
No 83
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.57 E-value=4.2e-13 Score=143.01 Aligned_cols=192 Identities=18% Similarity=0.245 Sum_probs=146.4
Q ss_pred EEEEEeCCCCCCCCCCcccCcc---CCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 193 VEILPINVGCLGACTYCKTKHA---RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~---rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
+..|.++.+|+.+|.||..+.. .++.+..+++++.+.++.+.+.|++.|.|+|.+.+.+ .++.++++.+.+.
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~li~~i~~~ 92 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR-----KDLEDIIAALAAL 92 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----cCHHHHHHHHHhc
Confidence 4568999999999999986542 2446778999999999999899999999999776554 3578899888653
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EE
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 348 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~i 348 (624)
. +...+.+. +|...+.+. +..+. ..+ ..++.|+++|.+++..+.++++.+.+++.+.++.+++. |+ .+
T Consensus 93 -~--~~~~i~it-TNG~ll~~~---~~~L~-~ag-l~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~--g~~~v 161 (331)
T PRK00164 93 -P--GIRDLALT-TNGYLLARR---AAALK-DAG-LDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA--GLTPV 161 (331)
T ss_pred -C--CCceEEEE-cCchhHHHH---HHHHH-HcC-CCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC--CCCcE
Confidence 2 33456664 565444433 22233 333 57899999999999999999999999999999999998 77 66
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHH
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~ 402 (624)
...++ .+||.+++++.+.+++++++++ .+.+..|.|.++...+... .++.++
T Consensus 162 ~i~~v-v~~g~n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~~~~~~~~~~~~~~~ 214 (331)
T PRK00164 162 KVNAV-LMKGVNDDEIPDLLEWAKDRGI-QLRFIELMPTGEGNEWFRKHHLSGAE 214 (331)
T ss_pred EEEEE-EECCCCHHHHHHHHHHHHhCCC-eEEEEEeeECCCCcchhhhcCCCHHH
Confidence 65554 3689999999999999999997 5788889998776443332 344443
No 84
>PRK08444 hypothetical protein; Provisional
Probab=99.55 E-value=1.4e-13 Score=147.67 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=148.7
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
+|..|.-|..+|.||++....+ .....++|+|++.++...+.|+++|.+++.....+.. ..+.++++.|++.+|
T Consensus 52 ~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~---e~y~e~ir~Ik~~~p- 127 (353)
T PRK08444 52 HINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGY---EWYLEIFKKIKEAYP- 127 (353)
T ss_pred CcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4667899999999999875433 2234799999999999999999999999864333321 346788888887654
Q ss_pred CCCceEEEeecCCcchh-------HHHHHHHHHHhCCCcceeccc-cCCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhC
Q 006956 273 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 343 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~v~~~l~I-GlQSgsd~vLk~M~R~~-t~e~~~e~I~~lr~~~ 343 (624)
.+.+....|.++. ...++....++.+++ ..++- |.|..++++.+.+..++ +.+++.+.++.+++.
T Consensus 128 ----~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl-~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~- 201 (353)
T PRK08444 128 ----NLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGV-DSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKK- 201 (353)
T ss_pred ----CceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCc-ccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHc-
Confidence 3344433333321 011233344455554 34444 79999999999998865 568999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeC----CCCccccCCCCCHH
Q 006956 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSA 401 (624)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~----PGTpa~~~~~vp~~ 401 (624)
|+.+.+.+|+|++ ||.+|..+.+..+++++.+..+|+.|.|. +|||+...+..+..
T Consensus 202 -Gi~~~sg~l~G~g-Et~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~ 261 (353)
T PRK08444 202 -GKMSNATMLFGHI-ENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQ 261 (353)
T ss_pred -CCCccceeEEecC-CCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHH
Confidence 9999999999994 99999999999999999999999999999 99999876666654
No 85
>PRK05926 hypothetical protein; Provisional
Probab=99.53 E-value=4.5e-13 Score=144.66 Aligned_cols=187 Identities=16% Similarity=0.183 Sum_probs=140.9
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
++..|..|+.+|.||++....+ .....++|+|+++++.. +.|+++|.+++.....+.. ..+.++++.|.+.+|
T Consensus 71 nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~---e~~~e~i~~Ik~~~p- 145 (370)
T PRK05926 71 YLYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNL---AYYEELFSKIKQNFP- 145 (370)
T ss_pred eeecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCH---HHHHHHHHHHHHhCC-
Confidence 3446899999999999655443 24567899999999998 7899999999754333211 356788888887654
Q ss_pred CCCceEEEeecCCcchhH-------HHHHHHHHHhCCCcceecc-ccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhC
Q 006956 273 DGSTMLRIGMTNPPFILE-------HLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 343 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~~-------~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~ 343 (624)
.+.+....+..+.. ..++..+.++..+ +.+++ -|.|+.++++++.+.. +.+.+++++.++.+++.
T Consensus 146 ----~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAG-l~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~- 219 (370)
T PRK05926 146 ----DLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAG-LDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSL- 219 (370)
T ss_pred ----CeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcC-cCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 33333232221100 1123334444555 45555 4799999999998864 56889999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeee----CCCCcccc
Q 006956 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAAR 394 (624)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP----~PGTpa~~ 394 (624)
|+.+.+.+|+| +|||.+|..+.+..+++++.+.++|..|.| -++||+..
T Consensus 220 -Gi~~~sgmi~G-~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 220 -GIPSNATMLCY-HRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred -CCcccCceEEe-CCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccc
Confidence 99999998888 599999999999999999999999999999 77888763
No 86
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.52 E-value=1.5e-12 Score=138.94 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=145.6
Q ss_pred EEEEEeCCCCCCCCCCcccCcc--CCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhC
Q 006956 193 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~--rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l 270 (624)
+..|.++.+||++|.||..... ..+....+.+++.+-++.+.+.|++.|.|+|.....+ .++.++++.+.+ .
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr-----~dl~~li~~i~~-~ 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVR-----RGCDQLVARLGK-L 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc-----ccHHHHHHHHHh-C
Confidence 4567889999999999975421 1234567899999989888889999999999776554 467899988875 3
Q ss_pred CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EEE
Q 006956 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIA 349 (624)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~i~ 349 (624)
+ +...+.+. +|...+.+.. .. +...+ ..++.++++|.+++..+.+.++.+.+++.+.++.++++ |+ .+.
T Consensus 89 ~--~l~~i~it-TNG~ll~~~~---~~-L~~aG-l~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~--Gi~~v~ 158 (329)
T PRK13361 89 P--GLEELSLT-TNGSRLARFA---AE-LADAG-LKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA--GFERIK 158 (329)
T ss_pred C--CCceEEEE-eChhHHHHHH---HH-HHHcC-CCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc--CCCceE
Confidence 2 33356664 6765555422 22 33344 68999999999999999999988999999999999998 87 566
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHH
Q 006956 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406 (624)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R 406 (624)
..+++ +||++.+++.+.++|+.+++++ +.+..|+|..+..-+... .++.++..+.
T Consensus 159 in~v~-~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~~~~~~~~~~~~~~e~~~~ 214 (329)
T PRK13361 159 LNAVI-LRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLGEIDERRRARHCSSDEVRAI 214 (329)
T ss_pred EEEEE-ECCCCHHHHHHHHHHHHhcCCe-EEEEecccCCCccchhhccCcCHHHHHHH
Confidence 55543 5899999999999999999986 457778888654322222 4666554444
No 87
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.50 E-value=1.3e-12 Score=144.61 Aligned_cols=206 Identities=12% Similarity=0.172 Sum_probs=147.0
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHHCCCcEEEEeecCC-CCCCCCccCCHHHHHHHHHHh
Q 006956 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDT-GAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~-~~yg~d~~~~l~eLL~~l~~~ 269 (624)
.+.|.+|..|+++|.||.+....+. ....++|+|+++++.+.+.|++++.|++... ..+.. ..+.++++.|.+.
T Consensus 85 fapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~---eyi~e~i~~I~~~ 161 (469)
T PRK09613 85 FAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDI---EYILESIKTIYST 161 (469)
T ss_pred EEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCH---HHHHHHHHHHHHh
Confidence 3456789999999999998755442 3467999999999999999999999975432 22221 3466777777653
Q ss_pred CCCCC-CceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHhCCC
Q 006956 270 LPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPG 345 (624)
Q Consensus 270 l~~~~-~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R---~~t~e~~~e~I~~lr~~~pg 345 (624)
....+ ...+.+. +.| ++. +++..+. ..+ ..++++-.||.+.+.++.++. +++.++-+++++.++++ |
T Consensus 162 ~~~~g~i~~v~in-ig~--lt~--eey~~Lk-eaG-v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~a--G 232 (469)
T PRK09613 162 KHGNGEIRRVNVN-IAP--TTV--ENYKKLK-EAG-IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEA--G 232 (469)
T ss_pred ccccCcceeeEEE-eec--CCH--HHHHHHH-HcC-CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHc--C
Confidence 21111 1234443 233 232 2344444 334 678999999999999999854 58999999999999999 9
Q ss_pred CE-EEEEEEEcCCCCCHHHHHHHHHHHHHc------CCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHH
Q 006956 346 MQ-IATDIICGFPGETDEDFNQTVNLIKEY------KFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 415 (624)
Q Consensus 346 i~-i~td~IvGfPGETeedf~eTl~fl~el------~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~ 415 (624)
+. +.+.+|+|+++ +.+|...++..++.+ +++.+.+..|.|.+|||+.+.+ .+++++ +.++..+.+
T Consensus 233 i~~Vg~G~L~GLge-~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e----~lriiA~~R 305 (469)
T PRK09613 233 IDDVGIGVLFGLYD-YKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDED----FKKIVAILR 305 (469)
T ss_pred CCeeCeEEEEcCCC-CHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHH----HHHHHHHHH
Confidence 97 99999999855 555666667666666 5777899999999999988776 577644 333444444
No 88
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.49 E-value=4.1e-12 Score=135.58 Aligned_cols=192 Identities=18% Similarity=0.266 Sum_probs=145.3
Q ss_pred EEEEEeCCCCCCCCCCcccCcc----CCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~----rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
+..|.++.+|+++|.||..... ..+....+.+++.+.++.+.+.|++.|.|+|.+.... .++.++++.+.+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~-----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR-----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccccc-----CCHHHHHHHHHh
Confidence 4567899999999999986541 1234567899999999999999999999999776654 467899998865
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCE
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~ 347 (624)
.+ +...+.+. +|...+.+. +..+. ..+ ..++.|+++|.+++..+.+.+ +.+.+++.+.++.++++ |+.
T Consensus 86 -~~--gi~~v~it-TNG~ll~~~---~~~L~-~~g-l~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~--G~~ 154 (334)
T TIGR02666 86 -LP--GIEDIALT-TNGLLLARH---AKDLK-EAG-LKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA--GLE 154 (334)
T ss_pred -cC--CCCeEEEE-eCchhHHHH---HHHHH-HcC-CCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc--CCC
Confidence 32 34366665 576555443 23333 333 578999999999999999985 57999999999999999 876
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHH
Q 006956 348 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 402 (624)
Q Consensus 348 -i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~ 402 (624)
+...+++ ++|.+++++.+.++++.+++++ +.+..|+|..++..+... .++.++
T Consensus 155 ~v~in~vv-~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~~~~~~~~~~~e 209 (334)
T TIGR02666 155 PVKLNTVV-MRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNGWREKKFVSADE 209 (334)
T ss_pred cEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCccchhhcccCHHH
Confidence 6666544 4889999999999999999985 788889998887544332 344443
No 89
>PRK05927 hypothetical protein; Provisional
Probab=99.48 E-value=5.5e-13 Score=142.99 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=140.6
Q ss_pred EEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
.|.++.-|+.+|.||.+....+. ....++++|++.++...+.|+++|.|+|..-..++. ..+.++++.|++.++
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~---e~~~~~i~~ik~~~p- 123 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGI---DYLEELVRITVKEFP- 123 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 35678999999999998653332 126789999999999999999999998765443322 346788888887654
Q ss_pred CCCceEEEeecCCcchh-------HHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCC
Q 006956 273 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVP 344 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~p 344 (624)
+. .+....|..+. ...++..+.++.+++-...+.++|+.++.+.+.+..+ ++.+++++.++.+++.
T Consensus 124 -~l---~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~l-- 197 (350)
T PRK05927 124 -SL---HPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRL-- 197 (350)
T ss_pred -CC---cccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHc--
Confidence 22 11111111111 0112233334455653344459999999999988774 4789999999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeC----CCCccccC
Q 006956 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARM 395 (624)
Q Consensus 345 gi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~----PGTpa~~~ 395 (624)
|+.+.+.+|+|+ |||.+|..+.+..+++++....+|..|.|. +|||+...
T Consensus 198 Gi~~~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~ 251 (350)
T PRK05927 198 GFRSTATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRR 251 (350)
T ss_pred CCCcCceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccC
Confidence 999999999999 999999999999999999777788888887 78998753
No 90
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.47 E-value=6.5e-12 Score=132.15 Aligned_cols=178 Identities=13% Similarity=0.199 Sum_probs=137.3
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC-cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
...|.++.+|+.+|.||..+..... .+.++.+++.+.++.+.+.|++.|.|+|...+.. .++.++++.+.+.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~iv~~l~~~-- 83 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLR-----KDLIEIIRRIKDY-- 83 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccc-----cCHHHHHHHHHhC--
Confidence 4578999999999999977543222 3568899999888888888999999999776553 3578888887652
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-EEE
Q 006956 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IAT 350 (624)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~-i~t 350 (624)
+...+.+. +|...+.+. +..+. ..+ +.++.++++|.+++..+.+.++.+.+++++.++.++++ |+. +..
T Consensus 84 --g~~~v~i~-TNG~ll~~~---~~~l~-~~g-~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~--G~~~v~i 153 (302)
T TIGR02668 84 --GIKDVSMT-TNGILLEKL---AKKLK-EAG-LDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA--GLTPVKL 153 (302)
T ss_pred --CCceEEEE-cCchHHHHH---HHHHH-HCC-CCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc--CCCcEEE
Confidence 33355554 566444332 22333 333 57899999999999999999888999999999999999 875 655
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCC
Q 006956 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (624)
Q Consensus 351 d~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PG 389 (624)
.+++ +||++.+++.+.++++.+++++ +++..|+|...
T Consensus 154 ~~v~-~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~~ 190 (302)
T TIGR02668 154 NMVV-LKGINDNEIPDMVEFAAEGGAI-LQLIELMPPGE 190 (302)
T ss_pred EEEE-eCCCCHHHHHHHHHHHHhcCCE-EEEEEEeECCC
Confidence 5544 6999999999999999999985 78888888653
No 91
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.44 E-value=9.1e-12 Score=132.41 Aligned_cols=190 Identities=16% Similarity=0.228 Sum_probs=143.0
Q ss_pred CCceEEEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCccCCHHHHHHH
Q 006956 189 RNKFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (624)
Q Consensus 189 ~~~~~a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~d~~~yg~d~~~~l~eLL~~ 265 (624)
+.+..+.+.+++||+.+|.||..+...|. ....+.+++.+-++++.+. |+.+|.|+|+|.+.... ..|.++++.
T Consensus 85 kyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~---~~L~~ll~~ 161 (321)
T TIGR03822 85 RYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSP---RRLGDIMAR 161 (321)
T ss_pred CCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCH---HHHHHHHHH
Confidence 34567788999999999999987765443 2345667777777777754 89999999988776532 357899999
Q ss_pred HHHhCCCCCCceEEEee----cCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006956 266 IVAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341 (624)
Q Consensus 266 l~~~l~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~ 341 (624)
+.+ ++ ....+|+++ .+|..+++.+ .+.++..+ + .+.+++++.+++-+ .++..++++.+++
T Consensus 162 l~~-i~--~v~~iri~Tr~~v~~p~rit~el---l~~L~~~g-~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~ 225 (321)
T TIGR03822 162 LAA-ID--HVKIVRFHTRVPVADPARVTPAL---IAALKTSG-K-TVYVALHANHAREL--------TAEARAACARLID 225 (321)
T ss_pred HHh-CC--CccEEEEeCCCcccChhhcCHHH---HHHHHHcC-C-cEEEEecCCChhhc--------CHHHHHHHHHHHH
Confidence 876 44 456788875 2566666544 34444433 2 47799999876543 3789999999999
Q ss_pred hCCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHH
Q 006956 342 LVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (624)
Q Consensus 342 ~~pgi~i~t-d~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~ 402 (624)
+ |+.+.. .+++...+++.+++.++++++.++++....++.+.|.+||..+ .++.+.
T Consensus 226 ~--Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f---~~~~~~ 282 (321)
T TIGR03822 226 A--GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHF---RVTIEE 282 (321)
T ss_pred c--CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccc---cCcHHH
Confidence 9 998766 4566557999999999999999999999999999999998655 355543
No 92
>PTZ00413 lipoate synthase; Provisional
Probab=99.42 E-value=1.6e-11 Score=130.38 Aligned_cols=182 Identities=18% Similarity=0.261 Sum_probs=137.0
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHHhC
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~~l 270 (624)
...|+..+..|+.+|.||.+.... .....+++++++.++...+.|++.+++++.+-... .|.+ ..+.+.+++|.+..
T Consensus 149 tATfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~ 226 (398)
T PTZ00413 149 TATIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESN 226 (398)
T ss_pred eeEeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccC
Confidence 445667799999999999997533 24567899999999999999999888887642111 1111 35667777776532
Q ss_pred CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHh-CCCCEE
Q 006956 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIEL-VPGMQI 348 (624)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R-~~t~e~~~e~I~~lr~~-~pgi~i 348 (624)
+ .+.+..+-|+...+ .+.+..+. .++ ...++-.||| +++.+..++. +++.++.+++|+.+++. .+|+.+
T Consensus 227 p-----~~~IevligDf~g~-~e~l~~L~-eAG-~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~t 297 (398)
T PTZ00413 227 P-----ELLLEALVGDFHGD-LKSVEKLA-NSP-LSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLT 297 (398)
T ss_pred C-----CCeEEEcCCccccC-HHHHHHHH-hcC-CCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceE
Confidence 2 34455445543211 12244443 444 6889999999 8999999995 68999999999999998 578999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEee
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ys 385 (624)
.+.+|+| +|||++|+.+++..+.+++++.+.|.+|-
T Consensus 298 cSGiIVG-LGET~eEvie~m~dLrelGVDivtIGQYL 333 (398)
T PTZ00413 298 KSSIMLG-LGETEEEVRQTLRDLRTAGVSAVTLGQYL 333 (398)
T ss_pred eeeeEec-CCCCHHHHHHHHHHHHHcCCcEEeecccc
Confidence 9999999 69999999999999999999999997764
No 93
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.42 E-value=2.7e-11 Score=131.24 Aligned_cols=196 Identities=19% Similarity=0.264 Sum_probs=143.4
Q ss_pred EEEEEeCCCCCCCCCCcccCccC---CCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 193 VEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~r---G~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
+..|.++.+|+.+|.||...... .+....+.+++.+.++.+.+.|++.|.|+|...+.+ .++.++++.+.+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr-----~dl~eli~~l~~- 132 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR-----KDIEDICLQLSS- 132 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcch-----hhHHHHHHHHHh-
Confidence 34578999999999999754211 122457889999999988899999999998765543 357888888865
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EE
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 348 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~i 348 (624)
++ +...+.+. +|...+.+.. .++.. .+ ...+.|+++|.+++..+.+.|+...+++++.|+.+++. |+ .+
T Consensus 133 ~~--gi~~i~it-TNG~lL~~~~---~~L~~-aG-ld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~--G~~~v 202 (373)
T PLN02951 133 LK--GLKTLAMT-TNGITLSRKL---PRLKE-AG-LTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIEL--GYNPV 202 (373)
T ss_pred cC--CCceEEEe-eCcchHHHHH---HHHHh-CC-CCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCcE
Confidence 33 44445554 5665454433 33333 33 57899999999999999998887889999999999998 75 34
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R 406 (624)
...+ +-++|++++++.+.++++++.++ .+.+..|+|..|++...-..++.++..++
T Consensus 203 kin~-vv~~g~N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~~~~~~~~~~ei~~~ 258 (373)
T PLN02951 203 KVNC-VVMRGFNDDEICDFVELTRDKPI-NVRFIEFMPFDGNVWNVKKLVPYAEMMDR 258 (373)
T ss_pred EEEE-EecCCCCHHHHHHHHHHHHhCCC-eEEEEEcccCCCCccccccCCCHHHHHHH
Confidence 4443 34578899999999999999885 68889999999986443234554444333
No 94
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.40 E-value=8.7e-12 Score=146.52 Aligned_cols=187 Identities=16% Similarity=0.297 Sum_probs=138.6
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
.|.+|.+|+.+|.||++....+ ....+++|+|+++++...+.|+++|.++|.....+. ...+.++++.|++..+
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p- 604 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVP- 604 (843)
T ss_pred ceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCC-
Confidence 4667999999999999875432 344579999999999999999999999875332222 1356788888887654
Q ss_pred CCCceEEEeecCCcchh-------HHHHHHHHHHhCCCcceecc-ccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhC
Q 006956 273 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 343 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~ 343 (624)
+ +.+....|.++. -...+....++.++ +..++ -+-+-.++++.+.+.. ..+.+++++.++.+++.
T Consensus 605 -~---i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAG-Lds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~l- 678 (843)
T PRK09234 605 -S---MHVHAFSPMEIVNGAARLGLSIREWLTALREAG-LDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEV- 678 (843)
T ss_pred -C---eeEEecChHHHHHHHHHcCCCHHHHHHHHHHhC-cCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHc-
Confidence 2 333222232221 01123334444555 34554 4666677777766765 45888999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeee----CCCCccc
Q 006956 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAA 393 (624)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP----~PGTpa~ 393 (624)
|+.+.+.+|+|+ +||.+|+.+.+.++++++.+..+|..|.| .|+||++
T Consensus 679 -Gi~~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 679 -GLRSSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred -CCCcccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcc
Confidence 999999999997 79999999999999999999999999999 7788875
No 95
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.33 E-value=3.7e-11 Score=141.29 Aligned_cols=195 Identities=17% Similarity=0.222 Sum_probs=139.8
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC------------CCc-cCC
Q 006956 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GVN 258 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg------------~d~-~~~ 258 (624)
.+|..|..|..+|.||.+....+ .....++|+|++.++...+.|++++.|++..-.... .+. -..
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey 152 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 152 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHH
Confidence 46778999999999999865444 345679999999999999999999999875543311 110 123
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh------cCCCCHHHH
Q 006956 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM------NREYTLSDF 332 (624)
Q Consensus 259 l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M------~R~~t~e~~ 332 (624)
+.++++.++++.+ -...+.++. ++. .++..+... + . .+++.+|+.+++..+.. ..+...++.
T Consensus 153 ~~~~~~~ik~~~g--l~p~i~~G~-----ls~--~E~~~Lk~~-g-~-s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~R 220 (843)
T PRK09234 153 VRAMAIRVLEETG--LLPHLNPGV-----MSW--SELARLKPV-A-P-SMGMMLETTSRRLFEEKGGPHYGSPDKDPAVR 220 (843)
T ss_pred HHHHHHHHHHhcC--CCceeeeCC-----CCH--HHHHHHHHh-c-C-cCCCCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 4555666655322 112333332 332 123333322 2 2 25678888888775432 223457788
Q ss_pred HHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc-----CCCeEEEEEeeeCCCCccccCCCCCHHHH
Q 006956 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVV 403 (624)
Q Consensus 333 ~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el-----~~~~v~i~~ysP~PGTpa~~~~~vp~~~~ 403 (624)
++.++.+++. |+.+.+.+|+|+ |||.+|..+.+..++++ +|..+-+..|.|.||||+...+..+.++.
T Consensus 221 L~ti~~A~~l--Gi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~ 293 (843)
T PRK09234 221 LRVLEDAGRL--SVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEEL 293 (843)
T ss_pred HHHHHHHHHc--CCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHH
Confidence 9999999999 999999999999 99999999999999999 57788999999999999987776665543
No 96
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.32 E-value=5.4e-10 Score=119.97 Aligned_cols=183 Identities=20% Similarity=0.301 Sum_probs=130.4
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
....+|.++.||+.+|.||.... .|..|..++++|++++..+.. .++++|+|+|. |.++ .++.++++.+...
T Consensus 102 ~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----GEPl-~n~~~vi~~l~~l 174 (349)
T PRK14463 102 RNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----GEPL-ANLDNVIPALQIL 174 (349)
T ss_pred CcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHHHHhcCCccEEEEecC-----Ccch-hcHHHHHHHHHHh
Confidence 45679999999999999998654 455788999999999988765 47899999982 3332 2455666555432
Q ss_pred CCCCC----CceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHh
Q 006956 270 LPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 270 l~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e~I~~lr~~ 342 (624)
....+ ...++++ ++. +.+. +.+++... -..+.+.+.|.+++..+.+ +|+++.+++.+++......
T Consensus 175 ~~~~gl~~s~r~itVs-TnG--l~~~---i~~l~~~~--~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~ 246 (349)
T PRK14463 175 TDPDGLQFSTRKVTVS-TSG--LVPE---MEELGREV--TVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLP 246 (349)
T ss_pred hcccccCcCCceEEEE-CCC--chHH---HHHHhhcc--CeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh
Confidence 11001 2356665 332 2333 33444322 2357789999999999886 8889999999988877764
Q ss_pred CCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCC
Q 006956 343 VPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (624)
Q Consensus 343 ~pgi~i~t-d~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGT 390 (624)
. +-.+.. +++++-..++++++++..++++.++. .+++-+|.|.+|.
T Consensus 247 ~-~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~ 293 (349)
T PRK14463 247 G-RRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGC 293 (349)
T ss_pred c-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCC
Confidence 2 234443 56666679999999999999999975 7999999998774
No 97
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.28 E-value=6.4e-10 Score=119.77 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=130.2
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH------CCCcEEEEee-cCCCCCCCCccCCHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSS-EDTGAYGRDIGVNLPILL 263 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~------~GvkeI~l~g-~d~~~yg~d~~~~l~eLL 263 (624)
....+|.++.||+.+|.||..+.. |..|..++++|++++..... .|+..|+|+| ...... ...+.+++
T Consensus 108 ~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln----~~~v~~~l 182 (356)
T PRK14455 108 GNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDN----YDNVMDFL 182 (356)
T ss_pred CceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCC----HHHHHHHH
Confidence 456799999999999999998864 56888999999999986422 3678899987 333221 12456666
Q ss_pred HHHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHh---hcCCCCHHHHHHHHHHH
Q 006956 264 NAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDTL 339 (624)
Q Consensus 264 ~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~---M~R~~t~e~~~e~I~~l 339 (624)
+.+.+.... .+...+.+++ +. +.+. +..++.... -..|.+.+.+.+++..+. ++|+++.+++++.++.+
T Consensus 183 ~~l~~~~g~~~s~r~itvsT-~G--~~~~---i~~l~d~~l-~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~ 255 (356)
T PRK14455 183 RIINDDKGLAIGARHITVST-SG--IAPK---IYDFADEGL-QINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYY 255 (356)
T ss_pred HHHhcccCcccCCCceEEEe-cC--chHh---HHHHHhccc-CeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 666542100 0122555552 22 1222 333333221 234679999999999875 67889999999999988
Q ss_pred HHhCCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 340 IELVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 340 r~~~pgi~i~t-d~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
.+. .+..+.. +++++-..++++++++..+|++.++ ..+++.+|.|.++.++
T Consensus 256 ~~~-~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky 307 (356)
T PRK14455 256 IEK-TNRRVTFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDY 307 (356)
T ss_pred HHh-cCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCC
Confidence 664 1444444 5666656899999999999999997 5799999999988753
No 98
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.27 E-value=3.2e-10 Score=114.88 Aligned_cols=174 Identities=16% Similarity=0.157 Sum_probs=121.4
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCC---CcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~G---vkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
.++-++.|||++|.||..+.... ..+..+++++++++..+...+ ...|.|+|++.+.+. ..+.++++.+.+
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~----~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQP----EFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCH----HHHHHHHHHHHH
Confidence 34567789999999998764322 235679999999999876542 257999987766541 123477777765
Q ss_pred hCCCCCCceEEEeecCCcc--hhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006956 269 ELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (624)
. +. .+.+. ++... +.+.+ .+++.. ...+.+++++.+++..+.+.+. +.+.+.+.++.+++. |+
T Consensus 93 ~----g~-~~~i~-TNG~~~~~~~~~---~~ll~~---~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~--g~ 157 (235)
T TIGR02493 93 L----GI-HTCLD-TSGFLGGCTEAA---DELLEY---TDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKR--NK 157 (235)
T ss_pred C----CC-CEEEE-cCCCCCccHHHH---HHHHHh---CCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhC--CC
Confidence 2 32 34443 44421 13333 333332 3568899999999998877654 788999999999998 87
Q ss_pred EEEEEEEEcCCC--CCHHHHHHHHHHHHHcC-CCeEEEEEeeeC
Q 006956 347 QIATDIICGFPG--ETDEDFNQTVNLIKEYK-FPQVHISQFYPR 387 (624)
Q Consensus 347 ~i~td~IvGfPG--ETeedf~eTl~fl~el~-~~~v~i~~ysP~ 387 (624)
.+...+++ +|| ++.+++++.++|+.+++ ...+++.+|.|.
T Consensus 158 ~~~v~~vv-~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~ 200 (235)
T TIGR02493 158 PIWIRYVL-VPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQL 200 (235)
T ss_pred cEEEEEee-eCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcc
Confidence 76666555 375 57899999999999998 567777777764
No 99
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.25 E-value=1.6e-09 Score=117.63 Aligned_cols=178 Identities=12% Similarity=0.133 Sum_probs=135.7
Q ss_pred CceEEEEEeCCCCCCCCCCcccCccC-CCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 190 NKFVEILPINVGCLGACTYCKTKHAR-GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 190 ~~~~a~I~isrGCp~~CsFC~ip~~r-G~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
.+...+++++..|+.+|.||...... ...+..+.+++.+-++.+.+.|+..|.|+|.+.+.+ .++.++++.+.+
T Consensus 14 ~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~il~~~~~ 88 (378)
T PRK05301 14 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLR-----KDLEELVAHARE 88 (378)
T ss_pred CCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCc-----hhHHHHHHHHHH
Confidence 35678899999999999999765322 234567889988888888888999999998777654 357888888865
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCCE
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pgi~ 347 (624)
. + ..+.+. +|...++++. +..+... + ...+.|++++.++++.+.+++. .+.+.+.+.++.+++. |+.
T Consensus 89 ~----g-~~~~i~-TNG~ll~~~~--~~~L~~~-g-~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~--g~~ 156 (378)
T PRK05301 89 L----G-LYTNLI-TSGVGLTEAR--LAALKDA-G-LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH--GYP 156 (378)
T ss_pred c----C-CcEEEE-CCCccCCHHH--HHHHHHc-C-CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC--CCc
Confidence 2 2 233343 6776666544 3333333 3 5789999999999998887655 4899999999999998 887
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeee
Q 006956 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (624)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP 386 (624)
+...++ ++.++.+++.+.++++.+++++.+.+..+.+
T Consensus 157 v~i~~v--v~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 157 LTLNAV--IHRHNIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred eEEEEE--eecCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 655444 4788999999999999999999888765544
No 100
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.24 E-value=2e-09 Score=114.79 Aligned_cols=184 Identities=15% Similarity=0.282 Sum_probs=131.2
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
....+|.++.||+.+|.||..... |..|..++++|++++..+.+ .++..|+|+|- |.+. .++.++++.+...
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGm-----GEPL-~N~d~vi~al~~l 174 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMGM-----GEPL-DNLDEVLKALEIL 174 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEeee-----CcCc-ccHHHHHHHHHHH
Confidence 466799999999999999997764 66678999999999998754 36899999982 3332 3456666666542
Q ss_pred CCCCC----CceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHh
Q 006956 270 LPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 270 l~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~---R~~t~e~~~e~I~~lr~~ 342 (624)
....+ ...+.+++ +. +...+ .+++.... ..+.+.+-|.+++..+.+. +.|+.+++.++++...+.
T Consensus 175 ~~~~g~~~s~r~ItVsT-~G--~~~~i---~~l~~~~~--~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~ 246 (345)
T PRK14466 175 TAPYGYGWSPKRITVST-VG--LKKGL---KRFLEESE--CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFS 246 (345)
T ss_pred hhccccCcCCceEEEEc-CC--CchHH---HHHhhccC--cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHh
Confidence 11001 24666663 32 22222 22222222 3677899999999987765 458899999999987665
Q ss_pred CCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCc
Q 006956 343 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (624)
Q Consensus 343 ~pg-i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTp 391 (624)
..+ +.+..-+|=|+ .+++++..+..++++.++ .++++-+|.|.||.+
T Consensus 247 ~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~ 294 (345)
T PRK14466 247 KQRRVSFEYIVFKGL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVD 294 (345)
T ss_pred hCCEEEEEEEEeCCC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCC
Confidence 333 55555566665 899999999999999887 789999999999963
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.21 E-value=2.9e-09 Score=114.76 Aligned_cols=176 Identities=12% Similarity=0.147 Sum_probs=132.0
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCC-CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
+...+++++..|+.+|.||..+.... .....+.+++.+-++.+.+.|+..|.|+|.+.+.+ .++.++++.+.+.
T Consensus 6 P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~ii~~~~~~ 80 (358)
T TIGR02109 6 PLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR-----PDLVELVAHARRL 80 (358)
T ss_pred CcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc-----ccHHHHHHHHHHc
Confidence 45678999999999999998653222 23457888888888888888999999998777654 3578888888652
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCCEE
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQI 348 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pgi~i 348 (624)
+ ..+.+. +|...+++.. +..+... + +..|.|++++.++++...+++. .+.+.+.+.++.++++ |+.+
T Consensus 81 ----g-~~~~l~-TNG~ll~~e~--~~~L~~~-g-~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~--g~~v 148 (358)
T TIGR02109 81 ----G-LYTNLI-TSGVGLTEAR--LDALADA-G-LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA--GLPL 148 (358)
T ss_pred ----C-CeEEEE-eCCccCCHHH--HHHHHhC-C-CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC--CCce
Confidence 2 234443 6666666543 3333333 3 5789999999999998887553 4688999999999998 8776
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEee
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ys 385 (624)
...+. ++.++.+++.+.++++.+++++.+.+....
T Consensus 149 ~v~~v--v~~~N~~~l~~~~~~~~~lg~~~i~~~~~~ 183 (358)
T TIGR02109 149 TLNFV--IHRHNIDQIPEIIELAIELGADRVELATTQ 183 (358)
T ss_pred EEEEE--eccCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 54444 468899999999999999999988876543
No 102
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.20 E-value=2.6e-09 Score=115.28 Aligned_cols=186 Identities=14% Similarity=0.249 Sum_probs=129.8
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHH--------HHCCCcEEEEee-cCCCCCCCCccCCHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV--------IADGVKEVWLSS-EDTGAYGRDIGVNLPI 261 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L--------~~~GvkeI~l~g-~d~~~yg~d~~~~l~e 261 (624)
...+.|.++.||+.+|+||..... |..|..+.++|++++..+ ...+++.|+|+| .....+. .++.+
T Consensus 120 ~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln~----d~v~~ 194 (368)
T PRK14456 120 RMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLNT----DNVFE 194 (368)
T ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccCH----HHHHH
Confidence 466789999999999999987753 666778999999997543 235789999998 3332221 23666
Q ss_pred HHHHHHHh-CCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh----cCCCCHHHHHHH
Q 006956 262 LLNAIVAE-LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM----NREYTLSDFRTV 335 (624)
Q Consensus 262 LL~~l~~~-l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M----~R~~t~e~~~e~ 335 (624)
+++.+.+. ... -+..++.++ ++. +.+. +.++... ++-..|.+++.|.+++..+.+ +++|..+++.++
T Consensus 195 ~i~~l~~~~~~~~is~r~Itis-T~G--l~~~---i~~L~~~-gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~ 267 (368)
T PRK14456 195 AVLTLSTRKYRFSISQRKITIS-TVG--ITPE---IDRLATS-GLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREA 267 (368)
T ss_pred HHHHHhccccccCcCcCeeEEE-CCC--ChHH---HHHHHHc-CCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHH
Confidence 66666542 100 012356665 332 3333 3334333 322479999999999999766 358999999999
Q ss_pred HHH-HHHhCCC--CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 336 VDT-LIELVPG--MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 336 I~~-lr~~~pg--i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
++. +++. | +.+..-+|-|+ .++++++.+.++|++.+. ..+++-+|.|.++.+.
T Consensus 268 i~~~~~~~--g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~ 323 (368)
T PRK14456 268 LIGYASKT--GEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKF 323 (368)
T ss_pred HHHHHHhc--CCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCC
Confidence 985 4444 5 34555566565 689999999999999985 4789999999988764
No 103
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.13 E-value=1.2e-08 Score=112.94 Aligned_cols=199 Identities=20% Similarity=0.257 Sum_probs=136.6
Q ss_pred eEEEEEeCCCCCCCCCCcccCcc-----C-C-CcccCCHHHHHHHHHHHHHC--CCcEEEEee-cCCCCCCCCccCCHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHA-----R-G-HLGSYTVESLVGRVRTVIAD--GVKEVWLSS-EDTGAYGRDIGVNLPI 261 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~-----r-G-~~Rsr~~e~Iv~EI~~L~~~--GvkeI~l~g-~d~~~yg~d~~~~l~e 261 (624)
-+..+.++.||+.+|.||...+. + | ..+..+++++++.++.+.+. +.+.|.|+| .+...+. ....+
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~----e~~~~ 99 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANI----GKTFQ 99 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCc----cccHH
Confidence 45678999999999999986432 1 2 23567899999999988764 567788887 4444431 23467
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh-------cCCCC------
Q 006956 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-------NREYT------ 328 (624)
Q Consensus 262 LL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M-------~R~~t------ 328 (624)
+++.+.+.++ ...+.++ +|...+.+.+ .+++.. + ..++.+.+-+.++++.+.+ +|.|+
T Consensus 100 ~l~~~~~~~~---~i~i~ls-TNG~~l~e~i---~~L~~~-g-vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~ 170 (442)
T TIGR01290 100 TLELVARQLP---DVKLCLS-TNGLMLPEHV---DRLVDL-G-VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAAD 170 (442)
T ss_pred HHHHHHHhcC---CCeEEEE-CCCCCCHHHH---HHHHHC-C-CCeEEEeccCCCHHHHhhcchhhccccccccCcchHH
Confidence 7777776543 2345554 5554334433 333333 2 5789999999999998765 33343
Q ss_pred --HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCC--CCcccc--CCCCCHHH
Q 006956 329 --LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP--GTPAAR--MKKVPSAV 402 (624)
Q Consensus 329 --~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~P--GTpa~~--~~~vp~~~ 402 (624)
.+..++.++.+.+. |+.+...+++ +||.+++++.+..+++++++...+++.+|.|.| |+++.- ++..+.++
T Consensus 171 il~e~~l~~l~~l~~~--G~~v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~ 247 (442)
T TIGR01290 171 LLIERQLEGLEKLTER--GILVKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDE 247 (442)
T ss_pred HHHHHHHHHHHHHHhC--CCeEEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHH
Confidence 34556888888888 8765544333 377788999999999999999889999999888 988532 23455544
Q ss_pred HHHH
Q 006956 403 VKKR 406 (624)
Q Consensus 403 ~~~R 406 (624)
..+-
T Consensus 248 l~~~ 251 (442)
T TIGR01290 248 LAAL 251 (442)
T ss_pred HHHH
Confidence 4433
No 104
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.13 E-value=2.9e-09 Score=113.78 Aligned_cols=188 Identities=16% Similarity=0.210 Sum_probs=130.1
Q ss_pred CceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 190 ~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
.+..+.+.++.||+.+|.||..+...+.....+.+++.+.++.+.+ .|+++|.|+|+|...... ..+.++++.+.+
T Consensus 111 y~~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~ 187 (331)
T TIGR00238 111 YVNRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEE 187 (331)
T ss_pred cCCcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHh
Confidence 3456789999999999999987654433233336777777777765 489999999988766532 237888988875
Q ss_pred hCCCCCCceEEEeecC----CcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006956 269 ELPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~----p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (624)
++ ....+|+++.. |..+++.+ .++++..+ +..+.++.-...+++ .+++.++++.++++
T Consensus 188 -i~--~~~~IRi~tr~~~~~P~rit~el---~~~L~~~~-~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~a-- 249 (331)
T TIGR00238 188 -IP--HLVRLRIGTRLPVVIPQRITDEL---CELLASFE-LQLMLVTHINHCNEI---------TEEFAEAMKKLRTV-- 249 (331)
T ss_pred -cC--CccEEEeecCCCccCchhcCHHH---HHHHHhcC-CcEEEEccCCChHhC---------CHHHHHHHHHHHHc--
Confidence 54 66788988643 44456543 44454433 344444433333221 26788999999999
Q ss_pred CCEEE--EEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHH
Q 006956 345 GMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (624)
Q Consensus 345 gi~i~--td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~ 402 (624)
|+.+. +-++-|. .++.+++.+..+.+.++++.-.+++.+.|..|+.-+ .+|.+.
T Consensus 250 Gi~v~~qtvLl~gv-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f---~~~~~~ 305 (331)
T TIGR00238 250 NVTLLNQSVLLRGV-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHF---LVPDAE 305 (331)
T ss_pred CCEEEeecceECCc-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccc---cCCHHH
Confidence 87544 4555565 778899999999999999988889999999998433 466543
No 105
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.12 E-value=6.9e-09 Score=109.11 Aligned_cols=193 Identities=17% Similarity=0.233 Sum_probs=143.9
Q ss_pred EEEeCCCCCCCCCCcccCc-c-CCC-cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 195 ILPINVGCLGACTYCKTKH-A-RGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~-~-rG~-~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
-|.+++-|+++|.||.-.. . ..+ ....++|+|..-++..++.|++.|.|+|+.... ..+|.++++.+.+.
T Consensus 14 RiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-----R~dl~eIi~~l~~~-- 86 (322)
T COG2896 14 RISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-----RKDLDEIIARLARL-- 86 (322)
T ss_pred EEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchh-----hcCHHHHHHHHhhc--
Confidence 4688999999999996543 1 111 124579999999999999999999999965433 25688899888763
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-EEE
Q 006956 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IAT 350 (624)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~-i~t 350 (624)
+...+.++ +|...+.. .++.++.++ +.++++++.|.+++.++.+.+....+++++-|+.+.++ |+. +..
T Consensus 87 --~~~~islT-TNG~~L~~----~a~~Lk~AG-l~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~--Gl~pVKl 156 (322)
T COG2896 87 --GIRDLSLT-TNGVLLAR----RAADLKEAG-LDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEA--GLTPVKL 156 (322)
T ss_pred --ccceEEEe-cchhhHHH----HHHHHHHcC-CcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCceEE
Confidence 34566664 56544433 333344555 79999999999999999998877799999999999999 874 444
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHH
Q 006956 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406 (624)
Q Consensus 351 d~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R 406 (624)
+..+ ++|-+++++.+.++|++..+. .+.+--|+|.-....+.+. -++.++..++
T Consensus 157 N~Vv-~kgvNd~ei~~l~e~~~~~~~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~ 211 (322)
T COG2896 157 NTVL-MKGVNDDEIEDLLEFAKERGA-QLRFIELMPLGEGNSWRLDKYLSLDEILRK 211 (322)
T ss_pred EEEE-ecCCCHHHHHHHHHHHhhcCC-ceEEEEEeecCcccchhhhccccHHHHHHH
Confidence 4433 366789999999999999997 6888889988765555555 5666555444
No 106
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.12 E-value=4.3e-09 Score=106.57 Aligned_cols=181 Identities=19% Similarity=0.274 Sum_probs=135.7
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHHh
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAE 269 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~~ 269 (624)
....|+..+.-|-.+|.||.+.. |+....++++-.+-++...+.|.+.+++++.|-.... |-+ ..|.+.+++|.+.
T Consensus 69 ~tATFmImG~~CTR~C~FC~V~~--g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-DGGA~hfa~~i~~Ire~ 145 (306)
T COG0320 69 GTATFMILGDICTRRCRFCDVKT--GRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-DGGAQHFAECIRAIREL 145 (306)
T ss_pred CceEEeeccchhccCCCccccCC--CCCCCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-ccchHHHHHHHHHHHhh
Confidence 44456777888999999999876 5566667777766677777789999999986432221 112 4689999999885
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhC-CCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~-~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (624)
.| ...+..+-|++-- ....+..++.. +.+ +.=.+|+.. +....++++.+.+.-+++++.+++..|.+..
T Consensus 146 ~P-----~t~iEvL~PDF~G-~~~al~~v~~~~pdV---~nHNvETVp-rL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~T 215 (306)
T COG0320 146 NP-----QTTIEVLTPDFRG-NDDALEIVADAGPDV---FNHNVETVP-RLYPRVRPGATYERSLSLLERAKELGPDIPT 215 (306)
T ss_pred CC-----CceEEEeCccccC-CHHHHHHHHhcCcch---hhcccccch-hcccccCCCCcHHHHHHHHHHHHHhCCCccc
Confidence 44 4556656776543 22223333333 333 333566653 4557778889999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEee
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ys 385 (624)
.+.+|+|+ |||.+++.++++-+++.+.|.+.+.+|.
T Consensus 216 KSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 216 KSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred ccceeeec-CCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 99999999 9999999999999999999999999986
No 107
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.12 E-value=8.3e-09 Score=110.58 Aligned_cols=191 Identities=15% Similarity=0.271 Sum_probs=128.2
Q ss_pred CceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcc--CCHHHHHH
Q 006956 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIG--VNLPILLN 264 (624)
Q Consensus 190 ~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~ 264 (624)
.....+|.++-||+.+|.||..+.. |..|..++++|++++..+.+ .++..|+|+|. |..+. ..+.+.++
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~-g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGm-----GEPlln~~~v~~~i~ 172 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKG-GLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGM-----GEPLLNIDEVLAAIR 172 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCC-CCccccCHHHHHHHHHHHHHHhcCCCCEEEEEec-----CccccCHHHHHHHHH
Confidence 3566899999999999999987653 55677899999999987654 35788999982 33221 12334444
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH-hC-CCcceeccccCCCCCHHHHHhh---cCCCCHHHHHHHHHH-
Q 006956 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RH-PCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT- 338 (624)
Q Consensus 265 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~-~~-~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e~I~~- 338 (624)
.+.+.+. -+...+++++.- +.+.++++.... .. ++.-..+.+.+-+.+++..+.+ ++.|..+++.+++..
T Consensus 173 ~l~~~~~-i~~r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y 248 (345)
T PRK14457 173 CLNQDLG-IGQRRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHY 248 (345)
T ss_pred HHhcccC-CccCceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHH
Confidence 4432111 122467776432 222233333211 00 0011357789999999999877 456888888877766
Q ss_pred HHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 339 lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
+.+.-..+.+..-+|=|+ .++++++++..+|++.++. ++++-+|.|.++.++
T Consensus 249 ~~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~ 300 (345)
T PRK14457 249 VAITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEF 300 (345)
T ss_pred HHHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCC
Confidence 444412367777777787 7899999999999999975 899999999887653
No 108
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.11 E-value=9.5e-09 Score=100.81 Aligned_cols=163 Identities=20% Similarity=0.305 Sum_probs=114.5
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 192 FVEILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
..+++.+++|||++|.||..+...+ ....+++++++++++.. ...++.|.|+|++...+ .++.++++.+.+
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPll~-----~~l~~li~~~~~- 88 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPTLQ-----AGLPDFLRKVRE- 88 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcccCc-----HhHHHHHHHHHH-
Confidence 3467788999999999998874322 24568899999999875 23478899998776654 247888888876
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHH-HHHHHHHHHHHhCCCC--
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS-DFRTVVDTLIELVPGM-- 346 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e-~~~e~I~~lr~~~pgi-- 346 (624)
. + ..+.+. ++.. ..+. +.+++. .+...++.+++++.++...+.++++...+ ++.+.++.+++. |+
T Consensus 89 ~---g-~~v~i~-TNg~-~~~~---l~~l~~-~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~--gi~~ 156 (191)
T TIGR02495 89 L---G-FEVKLD-TNGS-NPRV---LEELLE-EGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRS--GIPF 156 (191)
T ss_pred C---C-CeEEEE-eCCC-CHHH---HHHHHh-cCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHc--CCCE
Confidence 2 3 345554 3442 1222 344443 33347889999997666667777665554 899999999998 65
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 347 QIATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
.+.+.++-|+.+ ++++++.++++.+++
T Consensus 157 ~i~~~v~~~~~~--~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 157 ELRTTVHRGFLD--EEDLAEIATRIKENG 183 (191)
T ss_pred EEEEEEeCCCCC--HHHHHHHHHHhccCC
Confidence 455555556644 679999999999887
No 109
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.11 E-value=2.3e-09 Score=115.58 Aligned_cols=194 Identities=18% Similarity=0.290 Sum_probs=135.7
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
.+|..+.=|.++|+||.+....+ .-..+++|+|.++++.+.+.|++||.|+|.....++.+ .+.++++.+++.+|
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~---y~~~~~~~ik~~~p 137 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE---YYEELFRTIKEEFP 137 (370)
T ss_pred ecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH---HHHHHHHHHHHhCc
Confidence 45677888999999999876543 23468899999999999999999999998765555433 46788888887665
Q ss_pred CCCCceEEEeecCCcchh----HHHHH-HHHHHhCCCcceeccccCCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCC
Q 006956 272 PDGSTMLRIGMTNPPFIL----EHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPG 345 (624)
Q Consensus 272 ~~~~~~iri~~~~p~~i~----~~l~e-l~~l~~~~~v~~~l~IGlQSgsd~vLk~M~-R~~t~e~~~e~I~~lr~~~pg 345 (624)
......++...-..+. ...+| +..+ +.+++-...--|-+=.++++.+.+. .+.+.+.++++++.+++. |
T Consensus 138 --~~~i~a~s~~ei~~~~~~~~~s~~E~l~~L-k~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~l--G 212 (370)
T COG1060 138 --DLHIHALSAGEILFLAREGGLSYEEVLKRL-KEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRL--G 212 (370)
T ss_pred --chhhcccCHHHhHHHHhccCCCHHHHHHHH-HHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHc--C
Confidence 3333222211000000 01123 3333 3555433444455556777776665 346899999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHHcC-----CCeEEEEEeeeCCCC-ccccCC
Q 006956 346 MQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGT-PAARMK 396 (624)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~el~-----~~~v~i~~ysP~PGT-pa~~~~ 396 (624)
|..++.+++|. +||.+|..+++..++++. +..+.+-.|.|.+++ ++...+
T Consensus 213 I~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~ 268 (370)
T COG1060 213 IPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVP 268 (370)
T ss_pred CCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCC
Confidence 99999999998 999999999999999884 445555566677777 444443
No 110
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=2.4e-08 Score=106.71 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=128.8
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcc--CCHHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~ 265 (624)
+....|.++.||+++|.||..... |-.|..++++|++++..+.+. .++.|+|+|. |.+.. ..+..+++.
T Consensus 96 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGm-----GEPllN~d~v~~~i~~ 169 (336)
T PRK14470 96 HHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQ-----GEPFLNYDEVLRAAYA 169 (336)
T ss_pred CCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEec-----CccccCHHHHHHHHHH
Confidence 467899999999999999998653 456778999999999876542 5789999982 33321 234455555
Q ss_pred HHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH
Q 006956 266 IVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 341 (624)
Q Consensus 266 l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e~I~~lr~ 341 (624)
+.+.... .+..++.++ ++.. .+. +.+++.... -..|.+++.+.+++..+.+ +++++.+++.+.++.+.+
T Consensus 170 l~~~~~~~~~~~~ItVs-TnG~--~p~---i~~l~~~~~-~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~ 242 (336)
T PRK14470 170 LCDPAGARIDGRRISIS-TAGV--VPM---IRRYTAEGH-KFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAA 242 (336)
T ss_pred HhCccccccCCCceEEE-ecCC--hHH---HHHHHhcCC-CceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHH
Confidence 5431100 023566666 3332 222 333343332 2469999999999999887 446899999999999988
Q ss_pred hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCC
Q 006956 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (624)
Q Consensus 342 ~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PG 389 (624)
.-..+.+..-+|-|+ .++++++++..++++.+.. ++++-+|.|.+|
T Consensus 243 ~~rri~ieyvLI~Gv-NDseeda~~La~llk~l~~-~vnlI~~N~~~~ 288 (336)
T PRK14470 243 LRGRVTLEYVMISGV-NVGEEDAAALGRLLAGIPV-RLNPIAVNDATG 288 (336)
T ss_pred hCCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCCC-eEEEeccCCCCC
Confidence 722356666667777 5889999999999998854 788888988655
No 111
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.09 E-value=1.5e-08 Score=107.71 Aligned_cols=198 Identities=17% Similarity=0.197 Sum_probs=134.4
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
+....++++.+|+.+|.||........ .+..+++++++.++ +.|+..|.|+|.+...+ .++.++++.+.+
T Consensus 27 Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~-----pdl~eiv~~~~~ 98 (318)
T TIGR03470 27 PLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLH-----PEIDEIVRGLVA 98 (318)
T ss_pred CCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCcccccc-----ccHHHHHHHHHH
Confidence 456789999999999999976432221 23568888877655 46889999998776664 457888888865
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHH-HhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (624)
. + ..+.+. +|...+.+.+ .++...+ ...+.+.+.+.. +.- +..+++.+.+.+.+.|+.++++ |+.
T Consensus 99 ~----g-~~v~l~-TNG~ll~~~~---~~l~~~~--~~~i~VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~--G~~ 164 (318)
T TIGR03470 99 R----K-KFVYLC-TNALLLEKKL---DKFEPSP--YLTFSVHLDGLR-EHHDASVCREGVFDRAVEAIREAKAR--GFR 164 (318)
T ss_pred c----C-CeEEEe-cCceehHHHH---HHHHhCC--CcEEEEEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHC--CCc
Confidence 2 2 334443 6776665443 3343333 346788888764 444 3335667899999999999998 877
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHH
Q 006956 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412 (624)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~L~~ 412 (624)
+...+.+ +++++.+++.+.++++.+++++.+.+.+..|+..++-... .+..++.++.++++.+
T Consensus 165 v~v~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~-~l~~~e~~~~~~~~~~ 227 (318)
T TIGR03470 165 VTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDH-FLGRRQTKKLFREVLS 227 (318)
T ss_pred EEEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccccc-ccCHHHHHHHHHHHHh
Confidence 6655443 3678999999999999999999998887766644432111 2444444444444443
No 112
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.09 E-value=1.7e-08 Score=108.38 Aligned_cols=190 Identities=18% Similarity=0.292 Sum_probs=124.5
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcc--CCHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIG--VNLPILLN 264 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~----~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~ 264 (624)
....+|.+|.||+.+|.||..+. .|..|..++++|++++..+.. .++..|+|.| +|.... ..+.++++
T Consensus 98 ~~t~cvSsq~GC~l~C~FC~t~~-~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmG-----mGEPL~N~d~v~~~l~ 171 (348)
T PRK14467 98 HLTLCVSSQVGCAVGCKFCATAK-DGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMG-----MGEPLANYENVRKAVQ 171 (348)
T ss_pred CcEEEEEcCCCCCCcCcCCCCCC-CCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEc-----cChhhcCHHHHHHHHH
Confidence 46689999999999999999874 366689999999999876654 3578999988 233321 22344444
Q ss_pred HHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc---CCCCHHHHHHHHHHHH
Q 006956 265 AIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLI 340 (624)
Q Consensus 265 ~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~---R~~t~e~~~e~I~~lr 340 (624)
.+.+.... -+...+++++.- +.+.+.++....-.+. + .+.+.+-+.+++..+.+- +.+..+++.++++...
T Consensus 172 ~l~~~~gl~~~~r~itvsT~G---~~~~i~~l~~~~~l~~-v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~ 246 (348)
T PRK14467 172 IMTSPWGLDLSKRRITISTSG---IIHQIKRMAEDPVMPE-V-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYP 246 (348)
T ss_pred HHcChhccCcCCCcEEEECCC---ChhHHHHHHhhccccC-e-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 44321100 011367776331 1222222221100122 2 466899999999987654 4578888888887655
Q ss_pred H-hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEEeeeCCCCcc
Q 006956 341 E-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPA 392 (624)
Q Consensus 341 ~-~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~-~~~v~i~~ysP~PGTpa 392 (624)
. .-..+.+..-+|=|+ .++++++++..+|++.++ ..++++-+|.|+|+.++
T Consensus 247 ~~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 247 LPPGRRIMLEYVLIKGV-NDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred HhcCCeEEEEEEEECCc-cCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC
Confidence 3 312355555556565 688999999999999985 56899999999888754
No 113
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.07 E-value=4e-08 Score=105.84 Aligned_cols=185 Identities=17% Similarity=0.326 Sum_probs=123.1
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHH---HHH-C--C---CcEEEEeecCCCCCCCCccCCHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT---VIA-D--G---VKEVWLSSEDTGAYGRDIGVNLPI 261 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~---L~~-~--G---vkeI~l~g~d~~~yg~d~~~~l~e 261 (624)
.....|..+.|||.+|.||..+.. |..|..++++|++++.. ... . | ++.|+|+|. |... .++..
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~~-g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGm-----GEPL-ln~~~ 173 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGTM-GFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGM-----GEPL-LNLDE 173 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCCC-CCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecC-----Cccc-CCHHH
Confidence 456789999999999999986643 55678899999999943 332 2 3 678888872 3332 13334
Q ss_pred HHHHHHHhCCCCCC----ceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC---CCCHHHHHH
Q 006956 262 LLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRT 334 (624)
Q Consensus 262 LL~~l~~~l~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R---~~t~e~~~e 334 (624)
+++.+.......+. ..+.++ ++.. .+.+ ..+. ..+ ...+.|.+.|.+++..+.+.+ .++.+++.+
T Consensus 174 v~~~l~~l~~~~Gl~~~~r~itvs-T~G~--~~~i---~~L~-~~~-l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~ 245 (354)
T PRK14460 174 VMRSLRTLNNEKGLNFSPRRITVS-TCGI--EKGL---RELG-ESG-LAFLAVSLHAPNQELRERIMPKAARWPLDDLIA 245 (354)
T ss_pred HHHHHHHHhhhhccCCCCCeEEEE-CCCC--hHHH---HHHH-hCC-CcEEEEeCCCCCHHHHHHhcCccccCCHHHHHH
Confidence 44444321110021 356665 3331 2332 2333 233 368899999999999977744 478888888
Q ss_pred HHHHHHH-hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 335 VVDTLIE-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 335 ~I~~lr~-~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
++..... .-..+.+..-+|=| ..++++++++.++|++.++. .+++-+|.|.+|.+.
T Consensus 246 al~~~~~~~~~~v~iey~LI~G-vNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y 302 (354)
T PRK14460 246 ALKSYPLKTRERVTFEYLLLGG-VNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPY 302 (354)
T ss_pred HHHHHHHhcCCeEEEEEEEECC-CCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCC
Confidence 7775443 31124444444445 58999999999999999975 799999999999874
No 114
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.07 E-value=1.8e-08 Score=108.15 Aligned_cols=185 Identities=15% Similarity=0.206 Sum_probs=127.9
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCC--CcEEEEee-cCCCCCCCCccCCHHHHHHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG--VKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~G--vkeI~l~g-~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
....|.++.||+.+|.||..+.. |..|..++++|++++..+...| +..|+|+| +....+ .++.+.++.+.+
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~-g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln-----~~v~~~i~~l~~ 173 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSI-GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALAN-----PELFDALKILTD 173 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCC-CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCC-----HHHHHHHHHHhc
Confidence 56789999999999999998853 6788899999999999776655 88999998 444433 134555544443
Q ss_pred hCC-CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH-hC
Q 006956 269 ELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE-LV 343 (624)
Q Consensus 269 ~l~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e~I~~lr~-~~ 343 (624)
.-. .-+...+.+++.-. .+.++.+.+.+. ...+.+.+-+.+++..+.+ ++.+..+++.++++...+ .-
T Consensus 174 ~~~~~~~~r~itVsT~G~---~~~i~~l~~~~~----~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~ 246 (347)
T PRK14453 174 PNLFGLSQRRITISTIGI---IPGIQRLTQEFP----QVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTG 246 (347)
T ss_pred ccccCCCCCcEEEECCCC---chhHHHHHhhcc----CcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Confidence 100 00234566663321 122233443332 2355568889988887543 456788888777766555 31
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC----CCeEEEEEeeeCCCC
Q 006956 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYK----FPQVHISQFYPRPGT 390 (624)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~el~----~~~v~i~~ysP~PGT 390 (624)
..+.+..-+|=|+ .++++++++.++|++.++ +..+++-+|.|.++.
T Consensus 247 ~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~ 296 (347)
T PRK14453 247 RKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT 296 (347)
T ss_pred CcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC
Confidence 2367777888887 789999999999999884 578999999998874
No 115
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.06 E-value=4.8e-08 Score=104.82 Aligned_cols=184 Identities=16% Similarity=0.296 Sum_probs=124.8
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCccCCHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~------GvkeI~l~g~d~~~yg~d~~~~l~eLL~ 264 (624)
....+|.++.||+.+|.||..+.. |..|..++++|++++..+... .+++|+|+| +|... .++..+++
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-----mGEPl-ln~~~v~~ 164 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAM-GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-----MGEPL-LNYENVLK 164 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-----cCccc-cCHHHHHH
Confidence 456799999999999999987543 567889999999999876543 257889987 23332 23455666
Q ss_pred HHHHhCCCCC----CceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHHHHHH
Q 006956 265 AIVAELPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVD 337 (624)
Q Consensus 265 ~l~~~l~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e~I~ 337 (624)
.+.......+ ...+.++ ++. +.+.+ .+++... +-..|.+.+-+.+++..+.+ +++++.+++.+.++
T Consensus 165 ~i~~l~~~~g~~l~~r~itvS-T~G--~~~~i---~~L~~~~-l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~ 237 (343)
T PRK14468 165 AARIMLHPQALAMSPRRVTLS-TVG--IPKGI---RRLAEED-LGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVR 237 (343)
T ss_pred HHHHhcccccccccCceEEEE-CCC--ChHHH---HHHHHhC-cCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHH
Confidence 6543211001 1356665 332 22332 2333222 11258899999999999777 46789999999998
Q ss_pred HHHHhCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCC
Q 006956 338 TLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (624)
Q Consensus 338 ~lr~~~p-gi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGT 390 (624)
...+... .+.+..-+|=|+ .++++++++..++++++. .++++-+|.|.++.
T Consensus 238 ~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~ 289 (343)
T PRK14468 238 HYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGS 289 (343)
T ss_pred HHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCC
Confidence 6655421 245555555565 789999999999999986 47888899987763
No 116
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.05 E-value=1.8e-08 Score=108.60 Aligned_cols=187 Identities=15% Similarity=0.265 Sum_probs=126.0
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH---C------C--CcEEEEeecCCCCCCCCcc--C
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---D------G--VKEVWLSSEDTGAYGRDIG--V 257 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~---~------G--vkeI~l~g~d~~~yg~d~~--~ 257 (624)
.....|.++.||+.+|.||..+. .|..|..++++|++++..+.+ . | +++|+|.|- |..+. .
T Consensus 120 ~~tlCvSsQvGC~m~C~FCatg~-~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGm-----GEPLlN~d 193 (373)
T PRK14459 120 RATLCISSQAGCGMACPFCATGQ-GGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGM-----GEPLANYK 193 (373)
T ss_pred CceEEEEecCCCCCcCCCCCCCC-CCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecC-----CcchhhHH
Confidence 45679999999999999999764 356788999999999987653 1 1 678999872 33221 2
Q ss_pred CHHHHHHHHHHhCCC-CCC--ceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHH
Q 006956 258 NLPILLNAIVAELPP-DGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSD 331 (624)
Q Consensus 258 ~l~eLL~~l~~~l~~-~~~--~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~ 331 (624)
++.+.++.+.+..+. .+. ..+++++.- +.+.+ .+++... +-..|.+.|-|.+++..+.+ +|.|+.++
T Consensus 194 ~V~~~i~~l~~~~~~g~gis~r~ITvST~G---l~~~i---~~la~~~-l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ 266 (373)
T PRK14459 194 RVVAAVRRITAPAPEGLGISARNVTVSTVG---LVPAI---RKLADEG-LPVTLAVSLHAPDDELRDELVPVNTRWKVDE 266 (373)
T ss_pred HHHHHHHHHhCcccccCCccCCEEEEECcC---chhHH---HHHHHhc-CCeEEEEEeCCCCHHHHHHhcCcccCCCHHH
Confidence 344455555431010 022 256665331 22222 2233222 12258899999999998665 36799999
Q ss_pred HHHHHHHHHHhCCCC--EEEEEEEEcCCCCCHHHHHHHHHHHHHcC--CCeEEEEEeeeCCCCcc
Q 006956 332 FRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPA 392 (624)
Q Consensus 332 ~~e~I~~lr~~~pgi--~i~td~IvGfPGETeedf~eTl~fl~el~--~~~v~i~~ysP~PGTpa 392 (624)
++++++...+. .|. .+..-+|=|+ .+++++.++..++++.++ ..++++-+|.|.+|.++
T Consensus 267 ll~a~~~~~~~-~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y 329 (373)
T PRK14459 267 VLDAARYYADA-TGRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW 329 (373)
T ss_pred HHHHHHHHHHH-hCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC
Confidence 99997776532 154 4444555565 789999999999999985 56899999999988753
No 117
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.05 E-value=1.2e-08 Score=104.30 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=118.9
Q ss_pred EEEEEeCCCCCCCCCCcccCccC--CCcccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCccCC-HHHHHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVN-LPILLNAI 266 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~r--G~~Rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~d~~~yg~d~~~~-l~eLL~~l 266 (624)
..++....|||++|.||..+... ...+.+++++|++++..... .....|.|+|.+.+.+ .+ +.++++.+
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~~~~l~~~~ 95 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQ-----AEFVRDWFRAC 95 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC-----HHHHHHHHHHH
Confidence 34667789999999999876432 22456799999999887643 2335688888665543 23 34777777
Q ss_pred HHhCCCCCCceEEEeecCCcc--hhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 006956 267 VAELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~p 344 (624)
.+. +. .+.+. ++... +.+. +..++.. +..+.+++.+.+++..+.+.. .+.+..++.++.+++.
T Consensus 96 k~~----g~-~i~l~-TNG~~~~~~~~---~~~ll~~---~d~v~islk~~~~e~~~~~~g-~~~~~~l~~i~~l~~~-- 160 (246)
T PRK11145 96 KKE----GI-HTCLD-TNGFVRRYDPV---IDELLDV---TDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFARYLAKR-- 160 (246)
T ss_pred HHc----CC-CEEEE-CCCCCCcchHH---HHHHHHh---CCEEEECCCcCChhhcccccC-CChHHHHHHHHHHHhC--
Confidence 652 32 34443 33321 1233 2333321 456889999999998877754 3557788888889888
Q ss_pred CCEEE--EEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEEeeeCCCCc
Q 006956 345 GMQIA--TDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTP 391 (624)
Q Consensus 345 gi~i~--td~IvGfPGETeedf~eTl~fl~el~-~~~v~i~~ysP~PGTp 391 (624)
|+.+. +-+|-|+ .++++++++.++|+++++ +..+++.+|.|.++.+
T Consensus 161 g~~v~i~~~li~g~-nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 209 (246)
T PRK11145 161 NQKTWIRYVVVPGW-TDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHK 209 (246)
T ss_pred CCcEEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcceEEEecCCccchhH
Confidence 65544 4444444 456779999999999985 5788888998887653
No 118
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.03 E-value=2.7e-08 Score=106.56 Aligned_cols=187 Identities=18% Similarity=0.322 Sum_probs=133.9
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH-----------------CCCcEEEEeecCCCCCCC
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-----------------DGVKEVWLSSEDTGAYGR 253 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~-----------------~GvkeI~l~g~d~~~yg~ 253 (624)
.....|.+|-||+.+|.||.+.. -|-.|..++.+|++++..+.+ ..++.|+|.|- |.
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~-~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGM-----GE 179 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGT-LGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGM-----GE 179 (371)
T ss_pred CceEEEEccCCccCCCCcccCCC-CCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEcc-----CC
Confidence 45689999999999999998755 367899999999999987643 12678898873 55
Q ss_pred CccCCHHHHHHHHHHhCCCC----CCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCC
Q 006956 254 DIGVNLPILLNAIVAELPPD----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NRE 326 (624)
Q Consensus 254 d~~~~l~eLL~~l~~~l~~~----~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~ 326 (624)
.+ .++..+++++.-..... +..++.+++.- +.+.+ .+++... .-..|.+++-+.+++..+.+ +|.
T Consensus 180 PL-~NydnV~~ai~il~d~~g~~is~R~ITVST~G---ivp~I---~~la~~~-~~v~LAiSLHA~~~e~R~~lmPin~~ 251 (371)
T PRK14461 180 PF-ANYDRWWQAVERLHDPQGFNLGARSMTVSTVG---LVKGI---RRLANER-LPINLAISLHAPDDALRSELMPVNRR 251 (371)
T ss_pred ch-hhHHHHHHHHHHhcCccccCcCCCceEEEeec---chhHH---HHHHhcc-cCceEEEEeCCCCHHHHHHhcCcccC
Confidence 43 36677777775432211 13466776442 23333 3333322 23478899999999998553 789
Q ss_pred CCHHHHHHHHHHHHHhCCC--CEEEEEEEEcCCCCCHHHHHHHHHHHHHcC-----CCeEEEEEeeeCCCCccc
Q 006956 327 YTLSDFRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAA 393 (624)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pg--i~i~td~IvGfPGETeedf~eTl~fl~el~-----~~~v~i~~ysP~PGTpa~ 393 (624)
|..+++.++++...+. .+ +.+.--+|=| -.+++++.++..++++.++ .-++++-+|.|.||+++.
T Consensus 252 ypl~eLl~a~~~y~~~-t~rrit~EYvLi~g-vNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~ 323 (371)
T PRK14461 252 YPIADLMAATRDYIAK-TRRRVSFEYVLLQG-KNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG 323 (371)
T ss_pred CCHHHHHHHHHHHHHh-hCCEEEEEEEEECC-CCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC
Confidence 9999999999887654 24 4454444545 4899999999999999883 368999999999999743
No 119
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.03 E-value=4.7e-08 Score=105.66 Aligned_cols=185 Identities=16% Similarity=0.327 Sum_probs=127.4
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH----------CCCcEEEEeecCCCCCCCCccCCH-
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSSEDTGAYGRDIGVNL- 259 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~----------~GvkeI~l~g~d~~~yg~d~~~~l- 259 (624)
.....|.+|-||+.+|.||..+.. |..|..++++|++++..+.. .++++|+|+|. |..+ .++
T Consensus 102 ~~t~CvSsQvGC~~~C~FC~t~~~-g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm-----GEPL-~N~d 174 (372)
T PRK11194 102 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM-----GEPL-LNLN 174 (372)
T ss_pred CeeEEEecCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-----Cccc-cCHH
Confidence 456789999999999999998853 66688999999999876543 12788888872 4432 233
Q ss_pred --HHHHHHHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHH
Q 006956 260 --PILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFR 333 (624)
Q Consensus 260 --~eLL~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~ 333 (624)
.+.++.+.+.... .+...+++++.- +.+.+ .+++.... ..+.+.+-+.+++..+.+ ++.|..+++.
T Consensus 175 ~v~~al~~l~~~~g~~i~~r~itVsTsG---~~~~i---~~l~~~~d--~~LaiSLha~d~e~R~~lmPin~~~~l~~ll 246 (372)
T PRK11194 175 NVVPAMEIMLDDFGFGLSKRRVTLSTSG---VVPAL---DKLGDMID--VALAISLHAPNDELRDEIVPINKKYNIETFL 246 (372)
T ss_pred HHHHHHHHHhhhhccCcCCCeEEEECCC---CchHH---HHHHhccC--eEEEeeccCCCHHHHHHhcCCcccccHHHHH
Confidence 3444444432110 012367776432 22233 33333221 356678889999998554 3567888888
Q ss_pred HHHHHHHHhC----CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 334 TVVDTLIELV----PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 334 e~I~~lr~~~----pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
+++....+.- ..+.+..-+|=|+ .++++++++..+|++.++. ++++-+|.|++|.++
T Consensus 247 ~a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~~l~~-~VnLIPYN~~~~~~~ 307 (372)
T PRK11194 247 AAVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY 307 (372)
T ss_pred HHHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHhcCCc-eEEEecCCCCCCCCC
Confidence 7776665543 2477888888887 7999999999999999874 899999999998654
No 120
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.01 E-value=2.2e-07 Score=96.14 Aligned_cols=265 Identities=18% Similarity=0.240 Sum_probs=168.9
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC---cc----cCCHHHHHHHHHHHHHC--CCcEEEEeecC-CCCCCCCccCCHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHARGH---LG----SYTVESLVGRVRTVIAD--GVKEVWLSSED-TGAYGRDIGVNLPIL 262 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~---~R----sr~~e~Iv~EI~~L~~~--GvkeI~l~g~d-~~~yg~d~~~~l~eL 262 (624)
..-|.-+.||+.+|-||++.. |+ .| ...+|.+++.++..++. +--|..|-|+. .+.| ..+.+|
T Consensus 108 viqVRp~tgCnlnCIfCSVde--Gp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lY-----P~l~~l 180 (414)
T COG2100 108 VIQVRPSTGCNLNCIFCSVDE--GPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLY-----PHLVDL 180 (414)
T ss_pred EEEecCCccccceeEEEeccC--CcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccc-----hhHHHH
Confidence 345566899999999999853 32 12 23589999988888773 33466665542 2222 568999
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh-cC-CCCHHHHHHHHHHHH
Q 006956 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NR-EYTLSDFRTVVDTLI 340 (624)
Q Consensus 263 L~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M-~R-~~t~e~~~e~I~~lr 340 (624)
++++++ ++ +...+.+. +|...+++.+ +.+ +..++ ..++.+++.|.+++.-|.| ++ -|+.+.+++.++.+.
T Consensus 181 Vqalk~-~~--~v~vVSmQ-Tng~~L~~~l--v~e-LeeAG-LdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~ 252 (414)
T COG2100 181 VQALKE-HK--GVEVVSMQ-TNGVLLSKKL--VDE-LEEAG-LDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIA 252 (414)
T ss_pred HHHHhc-CC--CceEEEEe-eCceeccHHH--HHH-HHHhC-CceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHH
Confidence 999976 55 66666665 5666666654 333 33444 6899999999999998766 44 489999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCC----CeEEEEEeeeCCCC-ccccCCCCCHHHHHHHHHHHHHHHH
Q 006956 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF----PQVHISQFYPRPGT-PAARMKKVPSAVVKKRSRELTSVFE 415 (624)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~----~~v~i~~ysP~PGT-pa~~~~~vp~~~~~~R~~~L~~l~~ 415 (624)
+. +|.+-..=. =+||=+++++...++|+.+++. ..+.+..|.|+.-- ....+.-+|=.+-.+++.++..-..
T Consensus 253 ~a--~idvlIaPv-~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg 329 (414)
T COG2100 253 NA--GIDVLIAPV-WLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETG 329 (414)
T ss_pred hC--CCCEEEeee-ecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHHHhC
Confidence 98 775432211 2478899999999999999964 45667777776422 2222223455544555444433221
Q ss_pred -H--------hC-------ccccCCCcEEEEEE--EEEecCCeee--ee-EEEEEcCC---CCCCCCEEEEEEEEEecce
Q 006956 416 -A--------FT-------PYLGMEGRVERIWI--TEIAADGIHL--GY-VQVLVPST---GNMLGTSALVKITSVGRWS 471 (624)
Q Consensus 416 -~--------~~-------~~~~~vG~~~~VLv--e~~~~~g~~~--~y-~~V~~~~~---~~~~G~~v~V~I~~~~~~~ 471 (624)
. +. .+....|.+..+-| ++.- .|... .- ..+.+... ...+|+.++|+|+.....-
T Consensus 330 ~kpLilkP~~fG~~pRp~lp~PF~rGevv~aevV~~Gr~-kGEmlavArdRvIav~~~~~~~~~vG~~vkvrIvr~khnI 408 (414)
T COG2100 330 VKPLILKPGEFGMHPRPRLPKPFKRGEVVKAEVVLPGRL-KGEMLAVARDRVIAVINSNEGALLVGDRVKVRIVRTKHNI 408 (414)
T ss_pred CCccccChhhcCCCcCCCCCCccccCcEEEEEEEeccee-cceEEEEecccEEEEecCchhhhccCceEEEEEEEccCce
Confidence 0 11 12245687775533 3332 23222 11 22223222 2478999999999988777
Q ss_pred EEEEE
Q 006956 472 VFGEV 476 (624)
Q Consensus 472 l~g~~ 476 (624)
..|.+
T Consensus 409 ~Ia~p 413 (414)
T COG2100 409 YIAVP 413 (414)
T ss_pred EEeee
Confidence 77765
No 121
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.01 E-value=2.9e-08 Score=106.62 Aligned_cols=184 Identities=17% Similarity=0.258 Sum_probs=123.3
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcc--CCHHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~ 265 (624)
.....|.++.||+.+|.||..+. .|..|..++++|++++..+.. .++..|+|+|. |.++. ..+.++++.
T Consensus 100 ~~t~cissq~GC~l~C~fC~tg~-~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~Gm-----GEPLln~d~v~~~i~~ 173 (343)
T PRK14469 100 RITACISTQVGCPVKCIFCATGQ-SGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGM-----GEPLLNYENVIKSIKI 173 (343)
T ss_pred CeEEEEEecCCCCCcCcCCCCCC-CCccccCCHHHHHHHHHHHHHhccCCcCeEEEEcc-----ChhhhhHHHHHHHHHH
Confidence 45678999999999999998654 344577889999999865432 46788999982 33221 124455555
Q ss_pred HHHhC-CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHh---hcCCCCHHHHHHHHHHHHH
Q 006956 266 IVAEL-PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDTLIE 341 (624)
Q Consensus 266 l~~~l-~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~---M~R~~t~e~~~e~I~~lr~ 341 (624)
+.+.. ...+...+.++ ++.. .+.+ .++... ++-..+.+++.+.+++..+. ++|+++.+++++.++.+.+
T Consensus 174 l~~~~~~~~g~~~itis-TnG~--~~~i---~~L~~~-~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~ 246 (343)
T PRK14469 174 LNHKKMKNIGIRRITIS-TVGI--PEKI---IQLAEE-GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQK 246 (343)
T ss_pred HhchhcccCCCCeEEEE-CCCC--hHHH---HHHHhh-CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHH
Confidence 43210 00123366664 4432 3333 333333 22236999999999998765 3678999999999887665
Q ss_pred h-CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCC
Q 006956 342 L-VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (624)
Q Consensus 342 ~-~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PG 389 (624)
. -..+.+..-+|-|+ .++++++++..++++.++. ++++-+|.|.++
T Consensus 247 ~~~~~v~i~yvlI~g~-NDs~ed~~~La~llk~~~~-~VnLIpynp~~~ 293 (343)
T PRK14469 247 KTGNRVTIEYILIKGF-NDEIEDAKKLAELLKGLKV-FVNLIPVNPTVP 293 (343)
T ss_pred HhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhccCc-EEEEEecCCCCc
Confidence 4 12344544455554 7889999999999999874 688889988766
No 122
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.00 E-value=2.1e-08 Score=98.77 Aligned_cols=200 Identities=15% Similarity=0.177 Sum_probs=140.3
Q ss_pred EeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCc
Q 006956 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 276 (624)
Q Consensus 197 ~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~ 276 (624)
-+++-|..+|..|.-.+.++.. .-+-+++++++..+.+.|+..+.+.|.-.. -|.=--..+.+.|+++.+... -..
T Consensus 16 VTG~yC~lnC~HCg~~~L~~Mi-~vt~~~l~k~~~el~kkGy~g~llSGGm~s-rg~VPl~kf~d~lK~lke~~~--l~i 91 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEHMI-KVTTKSLLKRCMELEKKGYEGCLLSGGMDS-RGKVPLWKFKDELKALKERTG--LLI 91 (275)
T ss_pred EeccceEecChHHHHHHHHHhc-ccchHHHHHHHHHHHhcCceeEEEeCCcCC-CCCccHHHHHHHHHHHHHhhC--eEE
Confidence 4677899999999877766532 223388999999999999999999875332 221101357788888877542 112
Q ss_pred eEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 006956 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (624)
Q Consensus 277 ~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M-~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvG 355 (624)
...+++. .+.. +..+ +... ..-+.+-+= |++++++++ +-+.+.++|.+.+..+++. |+.+..++++|
T Consensus 92 naHvGfv-----dE~~--~ekl-k~~~-vdvvsLDfv-gDn~vIk~vy~l~ksv~dyl~~l~~L~e~--~irvvpHitiG 159 (275)
T COG1856 92 NAHVGFV-----DESD--LEKL-KEEL-VDVVSLDFV-GDNDVIKRVYKLPKSVEDYLRSLLLLKEN--GIRVVPHITIG 159 (275)
T ss_pred EEEeeec-----cHHH--HHHH-HHhc-CcEEEEeec-CChHHHHHHHcCCccHHHHHHHHHHHHHc--CceeceeEEEE
Confidence 3333333 2221 2222 2222 233334443 455666555 5567999999999999999 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHH
Q 006956 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412 (624)
Q Consensus 356 fPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~L~~ 412 (624)
+.+-.-..=.+.++.+.+..+|.+-+..+.|.|||.+...+.+|.++..+-.+..++
T Consensus 160 L~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~ 216 (275)
T COG1856 160 LDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARK 216 (275)
T ss_pred eccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHH
Confidence 987776666789999999999999999999999999999887777665554444443
No 123
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.00 E-value=7.3e-08 Score=103.91 Aligned_cols=187 Identities=17% Similarity=0.280 Sum_probs=124.2
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH------CCCcEEEEeecCCCCCCCCcc--CCHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~------~GvkeI~l~g~d~~~yg~d~~--~~l~eL 262 (624)
.....|..+.||+.+|.||..+.. |..|..++++|++++..+.. .++..|+|.|. |..+. ..+.++
T Consensus 104 ~~t~cVSsQ~GC~l~C~fC~t~~~-g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm-----GEPLln~d~v~~~ 177 (355)
T TIGR00048 104 RATVCVSSQVGCALGCTFCATAKG-GFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM-----GEPLLNLNEVVKA 177 (355)
T ss_pred CcEEEEecCCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----CchhhCHHHHHHH
Confidence 456789999999999999997653 55688999999999876532 25778999882 33221 123344
Q ss_pred HHHHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHHHHHHH
Q 006956 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT 338 (624)
Q Consensus 263 L~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e~I~~ 338 (624)
++.+.+.... -+..++.++ ++. +.+. +.+++... .-..+.+.+-+.+++..+.+ +|.|+.+++++.++.
T Consensus 178 l~~l~~~~g~~i~~~~itis-T~G--~~~~---i~~l~~~~-l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~ 250 (355)
T TIGR00048 178 MEIMNDDFGLGISKRRITIS-TSG--VVPK---IDILADKM-LQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRR 250 (355)
T ss_pred HHHhhcccccCcCCCeEEEE-CCC--chHH---HHHHHHhC-CCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 4444321100 012356665 332 2233 33333322 11257799999999998765 677899999988875
Q ss_pred H-HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 339 L-IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 339 l-r~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
. ++.-..+.+..-+|=|+ .++++++++..++++.++. ++++-+|.|.++.++
T Consensus 251 ~~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk~l~~-~VnLIPynp~~~~~~ 303 (355)
T TIGR00048 251 YLNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLKGTKC-KVNLIPWNPFPEADY 303 (355)
T ss_pred HHHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHhcCCC-ceEEEecccCCCCCC
Confidence 4 44411245555556565 7889999999999999874 788999999887654
No 124
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.98 E-value=5.1e-08 Score=104.12 Aligned_cols=184 Identities=17% Similarity=0.228 Sum_probs=127.8
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhC-
Q 006956 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL- 270 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l- 270 (624)
..+|.++-||+.+|.||..... |-.|..++++|++++..+.+. .+++|+|+|. |.+. .++.++++.+....
T Consensus 97 t~CvSsQvGC~~~C~FC~tg~~-g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGm-----GEPl-~N~d~vl~ai~~l~~ 169 (344)
T PRK14464 97 GLCVSTQVGCAVGCVFCMTGRS-GLLRQLGSAEIVAQVVLARRRRAVKKVVFMGM-----GEPA-HNLDNVLEAIDLLGT 169 (344)
T ss_pred cEEEEccCCcCCCCCcCcCCCC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEecc-----Cccc-CCHHHHHHHHHHhhc
Confidence 5799999999999999987543 567888999999999987764 6899999982 3333 34566666644311
Q ss_pred -CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCC
Q 006956 271 -PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 271 -~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~---R~~t~e~~~e~I~~lr~~~pgi 346 (624)
..-+...+.++.... .+...++.. . .+-..|.+.+.+.+++..+.+. +.|+.+++.++++.+.+.. |.
T Consensus 170 ~~~i~~r~itiST~G~---~~~i~rL~~---~-~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~-gr 241 (344)
T PRK14464 170 EGGIGHKNLVFSTVGD---PRVFERLPQ---Q-RVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARAT-GY 241 (344)
T ss_pred hhcCCCceEEEecccC---chHHHHHHH---h-cCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHH-CC
Confidence 001345566653321 122222322 1 2234677889999999986654 5689999999988887653 53
Q ss_pred E--EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccc
Q 006956 347 Q--IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (624)
Q Consensus 347 ~--i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~ 393 (624)
. +..-+|=|+ .+++++.++..++++.+.. ++++-+|.|.+|++..
T Consensus 242 ri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~-~vNLIPyN~v~g~~~~ 288 (344)
T PRK14464 242 PIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYA-VMNLIPYNSVDGDAYR 288 (344)
T ss_pred EEEEEEEEeCCC-CCCHHHHHHHHHHHhcccc-ccceecCCccCCCCcc
Confidence 3 333334354 8999999999999998764 7899999999998644
No 125
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.95 E-value=1.8e-07 Score=100.58 Aligned_cols=187 Identities=15% Similarity=0.256 Sum_probs=126.6
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcc--CCHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~------GvkeI~l~g~d~~~yg~d~~--~~l~eL 262 (624)
.....|.++.|||.+|.||..+. .|..|..++++|++++..+... ....|+|.|. |..+. ..+.++
T Consensus 109 r~t~CvSsQvGC~~~C~FCatg~-~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGm-----GEPL~N~d~v~~~ 182 (356)
T PRK14462 109 KYTVCVSSQVGCKVGCAFCLTAK-GGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGM-----GEPLDNLDNVSKA 182 (356)
T ss_pred CceEeeeccccCCCCCccCCCCC-CCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCC-----cccccCHHHHHHH
Confidence 45679999999999999998764 3567899999999999865442 1456777742 33321 233455
Q ss_pred HHHHHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHHHHHHH
Q 006956 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT 338 (624)
Q Consensus 263 L~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e~I~~ 338 (624)
++.+.+.... -+...+.+++.- +.+.+ .+++... .-..+.+.+-+.+++..+.+ ++.|..++++++++.
T Consensus 183 l~~l~~~~Gl~~~~r~itVsTsG---~~~~i---~~L~~~d-l~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~ 255 (356)
T PRK14462 183 IKIFSENDGLAISPRRQTISTSG---LASKI---KKLGEMN-LGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRK 255 (356)
T ss_pred HHHhcCccCCCcCCCceEEECCC---ChHHH---HHHHhcC-CCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHH
Confidence 5555432100 012356676432 12333 3333322 12467778999999998665 567888999998874
Q ss_pred HH-HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 339 LI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 339 lr-~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
.. +.-..+.+..-+|=|+ .+++++.+++.+|++.++ .++++-+|.|+++.++
T Consensus 256 y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~ 308 (356)
T PRK14462 256 FPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF 308 (356)
T ss_pred HHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC
Confidence 44 4422366776777777 899999999999999986 5899999999988764
No 126
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.92 E-value=2.1e-07 Score=99.53 Aligned_cols=179 Identities=13% Similarity=0.242 Sum_probs=124.6
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCccCCHHHHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~ 267 (624)
.....|.++-||+.+|+||.... .|-.|....++|++++..+.+ ..+.+|+|.| +|.++ .++..+++.+.
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL-~N~d~V~~~~~ 176 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPM-HNYFNVIRAAS 176 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcch-hhHHHHHHHHH
Confidence 35679999999999999998855 466788899999999977654 3588999988 45443 34455555554
Q ss_pred HhCCCC-----CCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHHHHHHHH
Q 006956 268 AELPPD-----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTL 339 (624)
Q Consensus 268 ~~l~~~-----~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e~I~~l 339 (624)
- +... +..+++++ ++. +.+.+ .+++.... -..|.|++-+.+++....+ ++.|..+++.+++..+
T Consensus 177 ~-l~~~~~~~~~~r~itvS-T~G--~~~~i---~~l~~~~~-~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~ 248 (342)
T PRK14465 177 I-LHDPDAFNLGAKRITIS-TSG--VVNGI---RRFIENKE-PYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDF 248 (342)
T ss_pred H-HhChhhhcCCCCeEEEe-CCC--chHHH---HHHHhhcc-CceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHH
Confidence 2 2110 23466665 332 22333 33332221 1378899999999998665 7889999999999977
Q ss_pred HHhCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeee
Q 006956 340 IELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (624)
Q Consensus 340 r~~~pg-i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP 386 (624)
.+.... +.+..-+|=|+ .++++++++..++++.++ .++++-+|.|
T Consensus 249 ~~~~~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~ 294 (342)
T PRK14465 249 TRELKRRITFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNT 294 (342)
T ss_pred HHHcCCEEEEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCC
Confidence 644222 34444445565 689999999999999987 5789999998
No 127
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.90 E-value=6.4e-08 Score=100.29 Aligned_cols=191 Identities=17% Similarity=0.268 Sum_probs=135.2
Q ss_pred EEEEeCCCCCCC----CCCcccCccCCCcccCCHHHHHHHHHHHHHC-C--CcE--E-EEeecCCCCCCCCcc-CCHHHH
Q 006956 194 EILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G--VKE--V-WLSSEDTGAYGRDIG-VNLPIL 262 (624)
Q Consensus 194 a~I~isrGCp~~----CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~-G--vke--I-~l~g~d~~~yg~d~~-~~l~eL 262 (624)
..|--++||.|. |++|..+.-. .....+.+++++++....+. . ..+ | +|++..|.. ..+.. .....+
T Consensus 49 ~vILrT~GC~w~~~~gC~MCgY~~d~-~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~I 126 (358)
T COG1244 49 TVILRTRGCRWYREGGCYMCGYPADS-AGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRYI 126 (358)
T ss_pred EEEEecCCcceeccCCcceecccccc-CCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHHH
Confidence 345568999864 9999987642 26677899999999887763 1 223 2 345443322 11111 223456
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchhH-HHHHHHHHHhCCCcceeccccCCCCCHHHH-HhhcCCCCHHHHHHHHHHHH
Q 006956 263 LNAIVAELPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTLI 340 (624)
Q Consensus 263 L~~l~~~l~~~~~~~iri~~~~p~~i~~-~l~el~~l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~~t~e~~~e~I~~lr 340 (624)
++.|.+ .+ ....+-+. .+|+++.+ .+.++.+++.. .-..+.||+||.||++. ..||||.|.++|.++++.+|
T Consensus 127 l~~is~-~~--~v~~vvvE-SRpE~I~eE~l~e~~~il~g--k~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir 200 (358)
T COG1244 127 LERISE-ND--NVKEVVVE-SRPEFIREERLEEITEILEG--KIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIR 200 (358)
T ss_pred HHHHhh-cc--ceeEEEee-cCchhcCHHHHHHHHHhhCC--ceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHH
Confidence 666654 22 35677776 78999876 45556555532 35689999999999998 88999999999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCH----HHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC
Q 006956 341 ELVPGMQIATDIICGFPGETD----EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETe----edf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~ 395 (624)
++ |+.+.+++++-.|-=|+ +|...++. ..+-..+.+++.+-+...||-...+
T Consensus 201 ~~--g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~l 256 (358)
T COG1244 201 NY--GAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKL 256 (358)
T ss_pred Hc--CCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecccccchhhHHHHH
Confidence 99 99999999999887665 34444444 3334568999999999999965544
No 128
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.90 E-value=1.2e-07 Score=101.04 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=119.3
Q ss_pred EEEEeCCCCCCCCCCcccCccCCCcc-cCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 194 EILPINVGCLGACTYCKTKHARGHLG-SYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG~~R-sr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
+.+.++.||+.+|.||...... ..+ ..+.+++.+-+.++.+ .|+++|.|+|++..... | ..|.++++.+.. ++
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~-d--~~L~~ll~~l~~-i~ 172 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFP-YQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAK-D--HRLDWLLNLLEQ-IP 172 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCC-c--hHHHHHHHHHHh-CC
Confidence 5667999999999999865432 122 2233333333444544 48999999998766542 2 247888888865 55
Q ss_pred CCCCceEEEee----cCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006956 272 PDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 272 ~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (624)
....+|+.+ ..|..+++. +.++++..+.-..+.+.+.+.. ++- +++.++++.++++ |+.
T Consensus 173 --~~~~iri~tr~~~~~p~rit~e---l~~~L~~~~~~~~~~~h~dh~~-Ei~---------d~~~~ai~~L~~~--Gi~ 235 (321)
T TIGR03821 173 --HLKRLRIHTRLPVVIPDRITSG---LCDLLANSRLQTVLVVHINHAN-EID---------AEVADALAKLRNA--GIT 235 (321)
T ss_pred --CCcEEEEecCcceeeHHHhhHH---HHHHHHhcCCcEEEEeeCCChH-hCc---------HHHHHHHHHHHHc--CCE
Confidence 566788874 345545543 4444444332222234555542 221 4588899999999 987
Q ss_pred EEEEEEE--cCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHH
Q 006956 348 IATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (624)
Q Consensus 348 i~td~Iv--GfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~ 402 (624)
+.....+ |+ .++.+++.+.++.+.++++....+|.+.|-.|+.-+ .++.+.
T Consensus 236 v~~qtvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f---~v~~~~ 288 (321)
T TIGR03821 236 LLNQSVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHF---DVDDER 288 (321)
T ss_pred EEecceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccc---cCCHHH
Confidence 6543333 43 578999999999999999988888999898887632 455543
No 129
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.84 E-value=5.7e-07 Score=96.55 Aligned_cols=186 Identities=13% Similarity=0.240 Sum_probs=121.3
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcc--CCHHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~ 265 (624)
...++|.++.|||.+|.||..+. -|..|..++++|++++..... ..+..+++.|. |.... ..+.++++.
T Consensus 100 ~~t~cvSsqvGC~~~C~FC~tg~-~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mgg-----GEPLln~d~v~~~l~~ 173 (342)
T PRK14454 100 GNSICVSTQVGCRMGCKFCASTI-GGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGS-----GEPLDNYENVMKFLKI 173 (342)
T ss_pred CCEEEEEcCCCCCCcCCcCCCCC-CCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECC-----chhhcCHHHHHHHHHH
Confidence 45689999999999999998753 366788999999999987654 13456665542 33321 234555555
Q ss_pred HHHhCCC-CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc---CCCCHHHHHHHHHH-HH
Q 006956 266 IVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDT-LI 340 (624)
Q Consensus 266 l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~---R~~t~e~~~e~I~~-lr 340 (624)
+.+.... -+...+.+++.- +.+.+ .+++...- -..+.+.+-+.+++..+.+- +.+..+++.+++.. +.
T Consensus 174 l~~~~gi~~~~r~itvsTsG---~~p~i---~~l~~~~~-~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~ 246 (342)
T PRK14454 174 VNSPYGLNIGQRHITLSTCG---IVPKI---YELADENL-QITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYIN 246 (342)
T ss_pred HhcccccCcCCCceEEECcC---ChhHH---HHHHhhcc-cceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 5432100 011256776421 11222 22332211 12477889999999986653 55788888777765 44
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCc
Q 006956 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (624)
Q Consensus 341 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTp 391 (624)
+.-..+.+..-+|=|+ .++++++++..++++.+. ..+++-+|.|.++..
T Consensus 247 ~~~~rv~iey~LI~gv-NDs~eda~~La~llk~l~-~~VnLiPyn~~~~~~ 295 (342)
T PRK14454 247 KTNRRITFEYALVKGV-NDSKEDAKELGKLLKGML-CHVNLIPVNEVKENG 295 (342)
T ss_pred HhCCEEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEEecCCCCCCC
Confidence 4412355666677776 789999999999999874 589999999987764
No 130
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.79 E-value=6.1e-07 Score=98.03 Aligned_cols=183 Identities=15% Similarity=0.233 Sum_probs=130.5
Q ss_pred CCceEEEEEeCCCCCCCCCCcccCccCC-CcccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCccCCHHHHHHHH
Q 006956 189 RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (624)
Q Consensus 189 ~~~~~a~I~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l 266 (624)
+.+-.+.+.++.+|+.+|.||.-....| .....+.+++.+-++++.+. ++++|.|+|.|...... ..|..+|+.+
T Consensus 105 rYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L 181 (417)
T TIGR03820 105 RYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTEL 181 (417)
T ss_pred ccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHH
Confidence 3455678899999999999997654333 34566788888888888874 99999999998876532 2356667888
Q ss_pred HHhCCCCCCceEEEeecC----CcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006956 267 VAELPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~----p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (624)
.+ ++ ....+|+++-- |..+++. +.++++..+ .+.++++..+++- ..++..+++++++++
T Consensus 182 ~~-Ip--hV~~IRI~TR~pvv~P~RIT~e---ll~~Lk~~~---~~~v~~h~nhp~E--------it~~a~~Al~~L~~a 244 (417)
T TIGR03820 182 RA-IP--HVEVIRIGTRVPVVLPQRITDE---LVAILKKHH---PVWLNTHFNHPRE--------ITASSKKALAKLADA 244 (417)
T ss_pred hh-cC--CCceEEEeeccccccccccCHH---HHHHHHhcC---CeEEEEeCCChHh--------ChHHHHHHHHHHHHc
Confidence 76 65 67788998422 5556654 444454433 2334444444432 258999999999999
Q ss_pred CCCCEEE--EEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc
Q 006956 343 VPGMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 343 ~pgi~i~--td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~ 394 (624)
|+.+. +-++=| =.++.+.+.+..+-+.++++.=-.+|..-+-+||.-|+
T Consensus 245 --GI~l~nQsVLLkG-VND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFr 295 (417)
T TIGR03820 245 --GIPLGNQSVLLAG-VNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFR 295 (417)
T ss_pred --CCEEEeeceEECC-cCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCccccc
Confidence 98655 455556 48899999999999999988666677777888876553
No 131
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.78 E-value=7.3e-07 Score=94.53 Aligned_cols=187 Identities=17% Similarity=0.309 Sum_probs=130.2
Q ss_pred CCceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHC-------CCcEEEEeecCCCCCCCCccCCHHH
Q 006956 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-------GVKEVWLSSEDTGAYGRDIGVNLPI 261 (624)
Q Consensus 189 ~~~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~-------GvkeI~l~g~d~~~yg~d~~~~l~e 261 (624)
.......|.++-||+-.|+||.+.. .|..|-.+..+|++++..+.+. -+..|+|.|- |.+. .++..
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~-~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGM-----GEPl-~N~dn 170 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQ-GGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGM-----GEPL-LNLDN 170 (349)
T ss_pred cCCceEEEecCCCcCCCCCeecccc-ccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecC-----Cchh-hhHHH
Confidence 3456778999999999999999765 4778999999999999987642 2566888873 4433 35556
Q ss_pred HHHHHHHhCCC--CCC--ceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh---cCCCCHHHHHH
Q 006956 262 LLNAIVAELPP--DGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRT 334 (624)
Q Consensus 262 LL~~l~~~l~~--~~~--~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---~R~~t~e~~~e 334 (624)
++.++.-.... .+. .++.++ +..+.+.+.++.+ ..+-..+.|++.+.+++..+.+ ||.|+.++..+
T Consensus 171 V~~a~~i~~~~~G~~ls~R~iTvS---TsGi~~~I~~l~~----~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~ 243 (349)
T COG0820 171 VVKALEIINDDEGLGLSKRRITVS---TSGIVPRIRKLAD----EQLGVALAISLHAPNDELRDQLMPINKKYPIEELLE 243 (349)
T ss_pred HHHHHHhhcCcccccccceEEEEe---cCCCchhHHHHHh----hcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHH
Confidence 66665432211 112 334444 2234555444442 1224578899999999987554 78899999999
Q ss_pred HHHHHHHhCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCc
Q 006956 335 VVDTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (624)
Q Consensus 335 ~I~~lr~~~pg-i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTp 391 (624)
+++...+.-.. +.+.--++=|. .+..++.++.++++..++- +++.-+|.|.||+.
T Consensus 244 a~r~Y~~~t~~rVt~EY~Ll~~V-ND~~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~ 299 (349)
T COG0820 244 AIRYYPEKSGRRVTFEYVLLDGV-NDSLEHAKELAKLLKGIPC-KVNLIPYNPVPGSD 299 (349)
T ss_pred HHHhhhhccCceEEEEeeecccc-cCCHHHHHHHHHHhcCCCc-eEEEeecCCCCCCC
Confidence 88887765222 33444445454 6669999999999988875 89999999999998
No 132
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.75 E-value=7.1e-07 Score=95.14 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=116.5
Q ss_pred eCCCCCCCCCCcccCccCC------CcccCCHHHHHHHHHHHHH---CC-----------------CcEEEEee-cCCCC
Q 006956 198 INVGCLGACTYCKTKHARG------HLGSYTVESLVGRVRTVIA---DG-----------------VKEVWLSS-EDTGA 250 (624)
Q Consensus 198 isrGCp~~CsFC~ip~~rG------~~Rsr~~e~Iv~EI~~L~~---~G-----------------vkeI~l~g-~d~~~ 250 (624)
+..||+.+|.||..+.... ..+..++++|++++..... .| .+.+.|++ ...+.
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL 143 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTL 143 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccc
Confidence 4568999999998875432 1346679999999976532 12 23455542 22222
Q ss_pred CCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCC---C
Q 006956 251 YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE---Y 327 (624)
Q Consensus 251 yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~---~ 327 (624)
| ..|.++++.+.+. +. .+.+. +|.. +.+. +..+ . +. ...+.+.|.+.+++..+.+.|+ .
T Consensus 144 ~-----p~l~eli~~~k~~----Gi-~~~L~-TNG~-~~e~---l~~L-~-~~-~d~i~VSLda~~~e~~~~i~~~~~~~ 205 (322)
T PRK13762 144 Y-----PYLPELIEEFHKR----GF-TTFLV-TNGT-RPDV---LEKL-E-EE-PTQLYVSLDAPDEETYKKINRPVIPD 205 (322)
T ss_pred h-----hhHHHHHHHHHHc----CC-CEEEE-CCCC-CHHH---HHHH-H-hc-CCEEEEEccCCCHHHHHHHhCCCCCC
Confidence 2 3578888888763 33 44444 4553 2332 3333 2 22 4688899999999999999874 5
Q ss_pred CHHHHHHHHHHHHHhCCCC--EEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCc
Q 006956 328 TLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (624)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi--~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTp 391 (624)
+.+.+.+.++.+++. +. .+.+.++ ||.+..+..+.++++++++++.+.+.+|.+.....
T Consensus 206 ~~~~vl~~L~~l~~~--~~~~~ir~tlv---~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k 266 (322)
T PRK13762 206 AWERILETLELLPSK--KTRTVIRITLV---KGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSR 266 (322)
T ss_pred cHHHHHHHHHHHHhC--CCCEEEEEEEE---CCcCccHHHHHHHHHHHcCCCEEEEECCeECCCcc
Confidence 889999999999998 54 4555554 44555555588999999999999999999876553
No 133
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.71 E-value=9.7e-07 Score=91.98 Aligned_cols=176 Identities=18% Similarity=0.283 Sum_probs=125.8
Q ss_pred CCCCCCCCcccCcc----CCCcccCCHHHHHHHHHHHHHC------CCcEEEEeec-CCCCCCCCccCCHHHHHHHHHHh
Q 006956 201 GCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 201 GCp~~CsFC~ip~~----rG~~Rsr~~e~Iv~EI~~L~~~------GvkeI~l~g~-d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
-|.++|.||..... .++....+.+.|.++++.+... .++.+.|++. ..+.| .+|.+|++.+.+.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy-----~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY-----PNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc-----cCHHHHHHHHHhc
Confidence 49999999987322 1245566789999999998876 4566666643 22233 6799999999874
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCC---CHHHHHHHHHHHHHh-CCC
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY---TLSDFRTVVDTLIEL-VPG 345 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~---t~e~~~e~I~~lr~~-~pg 345 (624)
+.... +-.+|... .+. +.++ .. ...+.+.+.+.+.+.+++++|++ ..+.+.+.++.+++. ...
T Consensus 108 ----g~~~t-flvTNgsl-pdv---~~~L-~~---~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~ 174 (296)
T COG0731 108 ----GKKTT-FLVTNGSL-PDV---LEEL-KL---PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR 174 (296)
T ss_pred ----CCceE-EEEeCCCh-HHH---HHHh-cc---CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc
Confidence 32222 22245432 222 2222 22 56888999999999999999995 578888888888885 333
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC
Q 006956 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 396 (624)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~ 396 (624)
+.+.+.++=|+ ..+++++++..+++++..++.+.+..|+ +||..-+.++
T Consensus 175 ~vir~tlvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~-rpgas~~~l~ 223 (296)
T COG0731 175 TVIRTTLVKGI-NDDEEELEEYAELLERINPDFVELKTYM-RPGASRYRLP 223 (296)
T ss_pred EEEEEEEeccc-cCChHHHHHHHHHHHhcCCCeEEEecCc-cCChHhhccC
Confidence 67888888888 5577889999999999999999999887 5555555443
No 134
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=98.71 E-value=1.5e-07 Score=95.38 Aligned_cols=177 Identities=21% Similarity=0.345 Sum_probs=123.1
Q ss_pred EEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHHhCC
Q 006956 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELP 271 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~~l~ 271 (624)
++-.++-|-..|.||++...|.+ .-...|+.. ++.+.+.|+..|+|++.|-.... |.+ ..|++-++.|++.-
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNT---AeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK~k~- 188 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENT---AEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIKEKA- 188 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCcccH---HHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHHhhC-
Confidence 44568889999999999887643 333334444 44556789999999986532221 111 46888888887643
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh--cCCCCHHHHHHHHHHHHHhCCCCEEE
Q 006956 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM--NREYTLSDFRTVVDTLIELVPGMQIA 349 (624)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M--~R~~t~e~~~e~I~~lr~~~pgi~i~ 349 (624)
..+-+..+.|++-- .++ +.+.+...++ .-+.-.+|+.-. |... .|..+..+-+.+++.+++..|++...
T Consensus 189 ----p~ilvE~L~pDF~G-d~~-~Ve~va~SGL-DV~AHNvETVe~--Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litk 259 (360)
T KOG2672|consen 189 ----PEILVECLTPDFRG-DLK-AVEKVAKSGL-DVYAHNVETVEE--LTPFVRDPRANYRQSLSVLKHAKEVKPGLITK 259 (360)
T ss_pred ----cccchhhcCccccC-chH-HHHHHHhcCc-cceecchhhHHh--cchhhcCcccchHHhHHHHHHHHhhCCCceeh
Confidence 35566667776543 333 3333434443 222234554432 2222 45578889999999999999998888
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeee
Q 006956 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (624)
Q Consensus 350 td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP 386 (624)
+.||.|+ |||+|++.+|++.++..+.+.+.+.+|++
T Consensus 260 tsiMlgl-getdeei~~tl~dLr~~~vdv~t~gqym~ 295 (360)
T KOG2672|consen 260 TSIMLGL-GETDEEIKQTLKDLRAADVDVVTFGQYMQ 295 (360)
T ss_pred hhhhhcc-CCCHHHHHHHHHHHHHcCCcEEecccccC
Confidence 9999998 99999999999999999999999888874
No 135
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.70 E-value=4.6e-07 Score=93.97 Aligned_cols=226 Identities=17% Similarity=0.266 Sum_probs=144.5
Q ss_pred ceEEEEEeC--CCCCCCCCCcccCcc-----------CCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccC
Q 006956 191 KFVEILPIN--VGCLGACTYCKTKHA-----------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257 (624)
Q Consensus 191 ~~~a~I~is--rGCp~~CsFC~ip~~-----------rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~ 257 (624)
...+|+.+. .||-..|+||..... |+.+-..+++++++-+..-.. .++.|.+.-. +|++. ..
T Consensus 28 ~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~i---~~p~~-~~ 102 (339)
T COG2516 28 PTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQI---AYPRA-LN 102 (339)
T ss_pred cceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-ccccccceee---ccccc-cc
Confidence 456777777 899999999965321 112233345565555444222 2455554322 23322 13
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEe-ecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC----CCCHHHH
Q 006956 258 NLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDF 332 (624)
Q Consensus 258 ~l~eLL~~l~~~l~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R----~~t~e~~ 332 (624)
++..+++++.-.+ ...+.++ .+.+....+++.+. .+.+ ..++.++++..+.++++.+.| +|+.+.+
T Consensus 103 d~~~i~~~~~~~~----~~~itiseci~~~~~~~~l~e~---~klg--~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~ 173 (339)
T COG2516 103 DLKLILERLHIRL----GDPITISECITAVSLKEELEEY---RKLG--ADYLGVAEDAANEELFEKVRKTSGSPHSWERY 173 (339)
T ss_pred hhhhhhhhhhhcc----CCceehhhhhhcccchHHHHHH---Hhcc--hhhhhHHHHhcCHHHHHHHHhccCCCCcHHHH
Confidence 4566667665322 1233333 13333333343333 3333 568899999999999988754 3789999
Q ss_pred HHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHH
Q 006956 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 412 (624)
Q Consensus 333 ~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~L~~ 412 (624)
.+.++++.++++.-.+.+++|+|+ |||++++-+++..+...+. .+|.|.|.|..||.+.+...+|- +..++.+...-
T Consensus 174 ~~~l~~~~~~~~k~rv~ihliVgl-GesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r~~~pv-e~Yrk~q~a~y 250 (339)
T COG2516 174 WEFLEKVAEAFGKGRVGIHLIVGL-GESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENRKPPPV-ERYRKIQVARY 250 (339)
T ss_pred HHHHHHHHHHhccCCcceeEEecc-CCchHHHHHHHHHHHhcCc-eEEEEEecccccccccCCCCCcH-HHHHHHHHHHH
Confidence 999999999998789999999995 9999999999999999885 79999999999999887766554 23333333333
Q ss_pred HHHH-hCccccCCCcEEEEEEE
Q 006956 413 VFEA-FTPYLGMEGRVERIWIT 433 (624)
Q Consensus 413 l~~~-~~~~~~~vG~~~~VLve 433 (624)
+... ...+..+.|-...-||+
T Consensus 251 li~~G~v~~~~~~fde~g~lI~ 272 (339)
T COG2516 251 LIGNGEVDLEDFEFDEFGNLID 272 (339)
T ss_pred HHhcCccchhhcccccccceec
Confidence 3331 22244455554444554
No 136
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.44 E-value=1.8e-05 Score=86.62 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=112.1
Q ss_pred CCCCCcccCccCCCcccCCHHHHHHHHHHHHHC---CCcEEEEeec-CCCCCCCCccCCHHHHHHHHHHhCCCCCCceEE
Q 006956 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279 (624)
Q Consensus 204 ~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~-d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~ir 279 (624)
+.|.||......-.-+..++++|+++++..... ....|.|.|. +...| ..+.+|++.+.+. +. .+.
T Consensus 37 ~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~-----~~l~eLl~~lk~~----gi-~ta 106 (404)
T TIGR03278 37 KGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY-----PELEELTKGLSDL----GL-PIH 106 (404)
T ss_pred CCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----HHHHHHHHHHHhC----CC-CEE
Confidence 378888554333345677899999999986642 3466788775 44443 4578999998763 22 355
Q ss_pred EeecCCcch-hHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006956 280 IGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (624)
Q Consensus 280 i~~~~p~~i-~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (624)
+.+++...+ .... +.+++... ...+.+.+.|.+++..+.|-..-..+.+++.++++.+. ..+.+..-+| ||
T Consensus 107 I~~TnG~~l~~~e~--~~~L~~~g--ld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~v~~~ivlI---PG 178 (404)
T TIGR03278 107 LGYTSGKGFDDPEI--AEFLIDNG--VREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CEVHAASVII---PG 178 (404)
T ss_pred EeCCCCcccCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CCEEEEEEEe---CC
Confidence 554554322 3222 44444332 57899999999999998865444558899999999885 2344444445 45
Q ss_pred CCH-HHHHHHHHHHHHcCCCeEEEEEeeeC
Q 006956 359 ETD-EDFNQTVNLIKEYKFPQVHISQFYPR 387 (624)
Q Consensus 359 ETe-edf~eTl~fl~el~~~~v~i~~ysP~ 387 (624)
-++ +++.++++++.++++..+++.+|.+.
T Consensus 179 iND~eel~~ti~~L~~lg~~~V~L~~y~~~ 208 (404)
T TIGR03278 179 VNDGDVLWKTCADLESWGAKALILMRFANT 208 (404)
T ss_pred ccCcHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 454 45579999999999999999999764
No 137
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.41 E-value=6.6e-05 Score=79.67 Aligned_cols=181 Identities=13% Similarity=0.192 Sum_probs=127.9
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCC-CcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~G-vkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
+....+.++.-|+.+|.||..........-.+.++..+.+..+.+.| ..-+.|.|.+.... .++.++++...+.
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~-----~d~~ei~~~~~~~ 92 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLR-----PDLLEIVEYARKK 92 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccc-----ccHHHHHHHHhhc
Confidence 55667889999999999997655433235556777777777888888 78788887766554 3567777777642
Q ss_pred CCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHH-HHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006956 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~v-Lk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (624)
......+. ++...+++.. + +.+...+ ..++.+.+++..++. ....++....+...+.++.+++. |+.+
T Consensus 93 ----~~~~~~~~-TnG~~~~~~~--~-~~l~~~g-~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~--g~~~ 161 (347)
T COG0535 93 ----GGIRVSLS-TNGTLLTEEV--L-EKLKEAG-LDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA--GILV 161 (347)
T ss_pred ----CCeEEEEe-CCCccCCHHH--H-HHHHhcC-CcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHc--CCee
Confidence 12333333 4542233332 2 2222333 689999999999998 55556677889999999999988 8763
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCC
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PG 389 (624)
.+.+-.+..+.+++.+.++++.++++....++.+.|...
T Consensus 162 --~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~ 200 (347)
T COG0535 162 --VINTTVTKINYDELPEIADLAAELGVDELNVFPLIPVGR 200 (347)
T ss_pred --eEEEEEecCcHHHHHHHHHHHHHcCCCEEEEEEEeeccc
Confidence 333334577899999999999999998888888877543
No 138
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.34 E-value=9.7e-07 Score=88.38 Aligned_cols=182 Identities=18% Similarity=0.284 Sum_probs=118.3
Q ss_pred CCCCCCCCCCcccCccC--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCC
Q 006956 199 NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (624)
Q Consensus 199 srGCp~~CsFC~ip~~r--G--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~ 274 (624)
+-||.-.|.||....-+ | -.+-..+|+|+++++...+.|-..+.+...=-...|+. ..|..+++-|.+.-...-
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk--~~fk~IlE~ikevr~Mgm 168 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRK--SAFKRILEMIKEVRDMGM 168 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccch--hHHHHHHHHHHHHHcCCc
Confidence 56899999999876433 3 25678899999999999999999888653211111222 456666666655321101
Q ss_pred CceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 006956 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (624)
Q Consensus 275 ~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv 354 (624)
..-+.+++++-.. ..+| +.+++ ....-.+.+.- +....+--.-+.++-++.|+.++++ ||.+.+.=|+
T Consensus 169 EvCvTLGMv~~qQ----AkeL----KdAGL-TAYNHNlDTSR-EyYskvItTRtYDdRL~Ti~nvr~a--GikvCsGGIl 236 (380)
T KOG2900|consen 169 EVCVTLGMVDQQQ----AKEL----KDAGL-TAYNHNLDTSR-EYYSKVITTRTYDDRLQTIKNVREA--GIKVCSGGIL 236 (380)
T ss_pred eeeeeeccccHHH----HHHH----Hhccc-eecccCccchh-hhhcccceecchHHHHHHHHHHHHh--cceecccccc
Confidence 1234555554321 1122 23332 22222333322 2222222234678999999999999 9999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcC--CCeEEEEEeeeCCCCccccC
Q 006956 355 GFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 355 GfPGETeedf~eTl~fl~el~--~~~v~i~~ysP~PGTpa~~~ 395 (624)
|+ ||.++|..-.+--+..++ +..+-|+.+.+.+|||+++-
T Consensus 237 GL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~ 278 (380)
T KOG2900|consen 237 GL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADE 278 (380)
T ss_pred cc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchh
Confidence 98 999998766666666554 56888999999999999874
No 139
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.33 E-value=5.6e-05 Score=83.38 Aligned_cols=181 Identities=12% Similarity=0.121 Sum_probs=116.6
Q ss_pred ceEEEEE-eCCCCCCCCCCcccCccCC-----CcccCCHHHHHHHHHHHHHC-CCcE--EEEeecCCCCCCCCccCCHHH
Q 006956 191 KFVEILP-INVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPI 261 (624)
Q Consensus 191 ~~~a~I~-isrGCp~~CsFC~ip~~rG-----~~Rsr~~e~Iv~EI~~L~~~-Gvke--I~l~g~d~~~yg~d~~~~l~e 261 (624)
++...++ ++..|+.+|.||......+ .....+.+.+.+-|+.+.+. +... |.|.|...+..+.+ .+.+
T Consensus 12 p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~---~~~~ 88 (412)
T PRK13745 12 PLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLS---FYKK 88 (412)
T ss_pred ceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHH---HHHH
Confidence 3455666 4578999999998643211 12346777777777777763 5444 55667666655432 1233
Q ss_pred HHHHHHHhCCCCCCceEEEee-cCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC----CCCHHHHHHHH
Q 006956 262 LLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVV 336 (624)
Q Consensus 262 LL~~l~~~l~~~~~~~iri~~-~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R----~~t~e~~~e~I 336 (624)
+++-+.+.. ....+++.. +|...+++.. .+.+...+ + .|.|+|.+. +++-...++ .-+.+.+.+.+
T Consensus 89 ~~~~~~~~~---~~~~i~~~i~TNG~ll~~e~---~~~l~~~~-~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i 159 (412)
T PRK13745 89 ALELQKKYA---RGRQIDNCIQTNGTLLTDEW---CEFFRENN-F-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGI 159 (412)
T ss_pred HHHHHHHHc---CCCceEEEEeecCEeCCHHH---HHHHHHcC-e-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHH
Confidence 443322211 123344442 6777777654 33343444 3 788889876 455444432 24889999999
Q ss_pred HHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeC
Q 006956 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (624)
Q Consensus 337 ~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~ 387 (624)
+.++++ |+.+.+-..+. .++.+...+.++++.++++..+++.++.|.
T Consensus 160 ~~l~~~--gi~~~i~~vv~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 160 NLLKKH--GVEWNAMAVVN--DFNADYPLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HHHHHc--CCCEEEEEEEc--CCccccHHHHHHHHHHcCCCeEEEEeccCc
Confidence 999998 88776655554 567788899999999999999999888874
No 140
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.26 E-value=4.7e-05 Score=79.97 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=102.2
Q ss_pred cCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCccCCH-HHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006956 220 SYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~---~GvkeI~l~g~d~~~yg~d~~~~l-~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 295 (624)
..+.+++++++..... .+...|.|+|.+.+.+ .++ .++++.+.+. + ..+.+. ++.....+. +
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~l~~l~~~~k~~----g-~~~~i~-TnG~~~~~~---~ 170 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ-----PEFALALLQACHER----G-IHTAVE-TSGFTPWET---I 170 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch-----HHHHHHHHHHHHHc----C-CcEeee-CCCCCCHHH---H
Confidence 3568888888876432 2445788988665543 233 4777777542 3 234443 343322333 3
Q ss_pred HHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC--EEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi--~i~td~IvGfPGETeedf~eTl~fl~e 373 (624)
.+++.. ...+.+.+.+.+++..+.+. +.+.+.+++.++.+.+. ++ .+.+-+|-|+ .++.+++.+.++|+.+
T Consensus 171 ~~ll~~---~d~~~isl~~~~~~~~~~~~-g~~~~~vl~~i~~l~~~--~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~~ 243 (295)
T TIGR02494 171 EKVLPY---VDLFLFDIKHLDDERHKEVT-GVDNEPILENLEALAAA--GKNVVIRIPVIPGF-NDSEENIEAIAAFLRK 243 (295)
T ss_pred HHHHhh---CCEEEEeeccCChHHHHHHh-CCChHHHHHHHHHHHhC--CCcEEEEeceeCCc-CCCHHHHHHHHHHHHH
Confidence 333322 34567889999998887764 34678899999999998 64 4455556565 4778999999999999
Q ss_pred cC--CCeEEEEEeeeCCCCcc
Q 006956 374 YK--FPQVHISQFYPRPGTPA 392 (624)
Q Consensus 374 l~--~~~v~i~~ysP~PGTpa 392 (624)
++ +..+++.+|.|.+..+.
T Consensus 244 ~~~~v~~v~l~~~~~~g~~~~ 264 (295)
T TIGR02494 244 LEPGVDEIDLLPYHRLGENKY 264 (295)
T ss_pred hccCCceEEecCCCchhHHHH
Confidence 98 78999999999877664
No 141
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=98.26 E-value=4.4e-06 Score=67.04 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=41.4
Q ss_pred ccCCCcEEEEEEEEEecCCeee----eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEE
Q 006956 421 LGMEGRVERIWITEIAADGIHL----GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 421 ~~~vG~~~~VLve~~~~~g~~~----~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
++++|++++|+||+.+.+|... +|..|++++....+|++++|+|+++.+++|.|+++
T Consensus 1 ~~~~G~~~~VlVe~~~~~g~~~gr~~~~~~V~v~~~~~~iG~~v~v~I~~~~~~~l~G~~v 61 (61)
T PF01938_consen 1 QSYVGKTLEVLVEELGDEGQGIGRTDNGKVVFVPGGLPLIGEFVKVRITKAKKNYLFGELV 61 (61)
T ss_dssp ---TTEEEEEEEEEE-TTSEEEEEET-TEEEEETT--T--TEEEEEEEEEE-SSEEEEEEE
T ss_pred CccCCcEEEEEEEEecCCCEEEEEeCCCeEEEECCCCCCCCCEEEEEEEEeeCCcEEEEEC
Confidence 4689999999999988555544 68889998654447999999999999999999986
No 142
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.26 E-value=8.4e-05 Score=76.03 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=93.2
Q ss_pred EEEEEeCCCCCCCCCCcccCccC-----CCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~r-----G~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~ 267 (624)
..||.+ .|||.+|.||..+... +.++..+.+++++++..+...|++.|.|+|.+...+ .++.+|++.+.
T Consensus 24 ~~FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~l~ 97 (238)
T TIGR03365 24 TMFVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDLGK 97 (238)
T ss_pred EEEEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHHHH
Confidence 445655 4999999999987632 123457999999999988777899999999776665 35789999987
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006956 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 268 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (624)
+. + ..+.+. +|.....+. + .. +.++.+.+-..+. .+ ....+...+.++.+++ +..
T Consensus 98 ~~----g-~~v~le-TNGtl~~~~---l----~~---~d~v~vs~K~~~s----g~--~~~~~~~~~~ik~l~~---~~~ 152 (238)
T TIGR03365 98 AK----G-YRFALE-TQGSVWQDW---F----RD---LDDLTLSPKPPSS----GM--ETDWQALDDCIERLDD---GPQ 152 (238)
T ss_pred HC----C-CCEEEE-CCCCCcHHH---H----hh---CCEEEEeCCCCCC----CC--CCcHHHHHHHHHHhhh---cCc
Confidence 63 2 345555 565543331 1 11 2355566554443 11 2235666777777775 455
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 348 IATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
...-|+++ . +.|++...++.....
T Consensus 153 ~~vK~Vv~--~--~~d~~~a~~~~~~~~ 176 (238)
T TIGR03365 153 TSLKVVVF--D--DADYAYAKEVHARYP 176 (238)
T ss_pred eEEEEEEC--C--cccHHHHHHHHHhcC
Confidence 66677777 2 333555555554443
No 143
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.24 E-value=0.00018 Score=77.91 Aligned_cols=173 Identities=16% Similarity=0.213 Sum_probs=107.8
Q ss_pred EEeCCCCCCCCCCcccCccCCC-----cccCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 196 LPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 196 I~isrGCp~~CsFC~ip~~rG~-----~Rsr~~e~Iv~EI~~L~~~--GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
+.++.+|+.+|.||..+..... ....+.+.+.+-++.+.+. +...|.|+|...+....+ .+.++++.+.+
T Consensus 9 ~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~---~~~~~~~~~~~ 85 (370)
T PRK13758 9 KPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLE---FFEELMELQRK 85 (370)
T ss_pred ecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChH---HHHHHHHHHHH
Confidence 3455899999999987642211 1234555555555555554 455788888666554211 13456665544
Q ss_pred hCCCCCCceEEEe-ecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC----CCCHHHHHHHHHHHHHhC
Q 006956 269 ELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVVDTLIELV 343 (624)
Q Consensus 269 ~l~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R----~~t~e~~~e~I~~lr~~~ 343 (624)
. .. ....++++ .+|...+++.. .+.+...+ . .+.|.+.+. +++-..+++ +.+.+.+.+.++.+++.
T Consensus 86 ~-~~-~~~~~~~~i~TNG~ll~~~~---~~~l~~~~-~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~- 156 (370)
T PRK13758 86 H-NY-KNLKIYNSLQTNGTLIDESW---AKFLSENK-F-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKY- 156 (370)
T ss_pred h-cc-CCCeEEEEEEecCEecCHHH---HHHHHHcC-c-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHh-
Confidence 2 10 11223222 25776666544 23333333 3 788889887 455555542 45889999999999998
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEE
Q 006956 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (624)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ 383 (624)
++.+..-+.+. ..+.+++.+.++++.++++..+.+..
T Consensus 157 -~~~~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 157 -KVEFNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred -CCCceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 77666666665 35678899999999999998776654
No 144
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.23 E-value=2.5e-05 Score=80.38 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=122.0
Q ss_pred CCCCCCCCCCcccCccCCCc-ccCCHHHHHHHHHHHHHCCCcE-EEEeecCCCCCCCCcc-CCHHHHHHHHHHhCCCCCC
Q 006956 199 NVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIADGVKE-VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGS 275 (624)
Q Consensus 199 srGCp~~CsFC~ip~~rG~~-Rsr~~e~Iv~EI~~L~~~Gvke-I~l~g~d~~~yg~d~~-~~l~eLL~~l~~~l~~~~~ 275 (624)
+.-|-+.|.||+........ ....+++|++---.+.+..+-| ++|.+. +.-. .|.. +.+.+.++.+.-+.. ..
T Consensus 61 TN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSG-vi~~-~DyTmE~mi~var~LRle~~--f~ 136 (404)
T COG4277 61 TNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSG-VIKN-PDYTMEEMIEVARILRLEHK--FR 136 (404)
T ss_pred hhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccc-cccC-cchHHHHHHHHHHHHhhccc--cC
Confidence 45699999999875544433 4678999998766666655544 444432 2211 1211 223333333332111 11
Q ss_pred ceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC------------
Q 006956 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV------------ 343 (624)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~------------ 343 (624)
..|.+-. -|.. ...+ +.++. -.+.+++|.+|...++.|+.+.-..+..++.+...++|..+
T Consensus 137 GYIHlK~-IPga-s~~l--i~eag---lyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~ 209 (404)
T COG4277 137 GYIHLKI-IPGA-SPDL--IKEAG---LYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRH 209 (404)
T ss_pred cEEEEEe-cCCC-CHHH--HHHHh---hhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhcc
Confidence 2333332 2322 2222 22221 12678999999999999999987777788888888887721
Q ss_pred -CCCE---EEEEEEEcCCCCCHHHHHHHHHHH-HHcCCCeEEEEEeeeCCCCccccCCCCC
Q 006956 344 -PGMQ---IATDIICGFPGETDEDFNQTVNLI-KEYKFPQVHISQFYPRPGTPAARMKKVP 399 (624)
Q Consensus 344 -pgi~---i~td~IvGfPGETeedf~eTl~fl-~el~~~~v~i~~ysP~PGTpa~~~~~vp 399 (624)
|.+. -+|-+|+|-.|||++++...-+.+ ..+.+.++.+..|+|.|+||..-..+.|
T Consensus 210 tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~pp 270 (404)
T COG4277 210 TPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDKPP 270 (404)
T ss_pred CccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCcccCCc
Confidence 3332 468999999999999998877766 5678999999999999999986533444
No 145
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.23 E-value=5.9e-05 Score=79.49 Aligned_cols=186 Identities=19% Similarity=0.200 Sum_probs=124.6
Q ss_pred EEEEeCCCCCCCCCCcccCccCCCc-cc----CCHHHHHHHHHHHHH-CCC-cEEEEeecCCCCCCCCccCCHHHHHHHH
Q 006956 194 EILPINVGCLGACTYCKTKHARGHL-GS----YTVESLVGRVRTVIA-DGV-KEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG~~-Rs----r~~e~Iv~EI~~L~~-~Gv-keI~l~g~d~~~yg~d~~~~l~eLL~~l 266 (624)
-.+..-+||.+.|.||-.....+.. .+ ...+.+++.++.-.. .+. ...+.+|-++-.|.... .-..+.+.+
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E--~~~~ltR~i 108 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIE--KEYRLTRKI 108 (297)
T ss_pred eecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcch--HHHHHHHHH
Confidence 3567889999999999887655543 22 223447777766544 333 33455566666675531 122333333
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCC
Q 006956 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPG 345 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pg 345 (624)
.+.+.. ....+.|. +-...+..+++.|.++.... ...+.+.+-+.++++.+.+-.+ -+.++-.++++.+.++ |
T Consensus 109 lei~~~-~~~~v~I~-TKS~lv~RDld~l~~~~~~~--~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea--G 182 (297)
T COG1533 109 LEILLK-YGFPVSIV-TKSALVLRDLDLLLELAERG--KVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA--G 182 (297)
T ss_pred HHHHHH-cCCcEEEE-ECCcchhhhHHHHHhhhhcc--ceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHC--C
Confidence 332210 23556666 44444556666566555433 2478888889988888888665 4889999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeC
Q 006956 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (624)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~ 387 (624)
+.+...+-==+|+.+++++++.++-+.+.+...+..+.+.-.
T Consensus 183 i~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~ 224 (297)
T COG1533 183 IPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLR 224 (297)
T ss_pred CeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeecc
Confidence 988777766679999999999999999999887666544433
No 146
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00028 Score=73.22 Aligned_cols=172 Identities=17% Similarity=0.257 Sum_probs=103.8
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHH-HHH--HCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR-TVI--ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~-~L~--~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
..+.-...|||++|.||..+.....-+..+.+++..|+- ... ..+..-|.++|.+.+..- .-+.++++..++.
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q~----e~~~~~~~~ake~ 111 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQA----EFALDLLRAAKER 111 (260)
T ss_pred EEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhhH----HHHHHHHHHHHHC
Confidence 456677899999999999886553223334444443322 221 236778888876554431 2346666666553
Q ss_pred CCCCCCceEEEeecCCcchhH-HHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-
Q 006956 270 LPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ- 347 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~i~~-~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~- 347 (624)
| ....+. ++. ++.. ..+++... +..+.+-+=..+++..+..- +.+.+.+++.++.+.+. |+.
T Consensus 112 ----G-l~~~l~-TnG-~~~~~~~~~l~~~------~D~v~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~--g~~v 175 (260)
T COG1180 112 ----G-LHVALD-TNG-FLPPEALEELLPL------LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADL--GVHV 175 (260)
T ss_pred ----C-CcEEEE-cCC-CCCHHHHHHHHhh------cCeEEEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcC--CCeE
Confidence 2 233333 222 1222 11223322 45677788888888655553 33448999999999997 654
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEEee
Q 006956 348 -IATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFY 385 (624)
Q Consensus 348 -i~td~IvGfPGETeedf~eTl~fl~el~-~~~v~i~~ys 385 (624)
+++-+|=|+ .++++++++.++|+.++. ..-+++.+|.
T Consensus 176 e~r~lviPg~-~d~~e~i~~i~~~i~~~~~~~p~~~l~fh 214 (260)
T COG1180 176 EIRTLVIPGY-NDDEEEIRELAEFIADLGPEIPIHLLRFH 214 (260)
T ss_pred EEEEEEECCC-CCCHHHHHHHHHHHHhcCCcccEEEeccc
Confidence 555556555 578999999999999853 3344555444
No 147
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=98.05 E-value=5.5e-05 Score=79.00 Aligned_cols=186 Identities=14% Similarity=0.143 Sum_probs=127.7
Q ss_pred ccCCHHHHHHHHHHHHHCCC----cEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC---------------C--CCce
Q 006956 219 GSYTVESLVGRVRTVIADGV----KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP---------------D--GSTM 277 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~Gv----keI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~---------------~--~~~~ 277 (624)
|.-|.++.-..+++|...|. .|+++.|..|.+...+.. ..+++.+...+.. . .-..
T Consensus 148 RYdP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YR---d~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiG 224 (554)
T KOG2535|consen 148 RYDPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYR---DYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIG 224 (554)
T ss_pred hcCHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHH---HHHHHHHHHHhcCCCccCHHHHHHhhhhccceeee
Confidence 34456777777888887663 467778888776644321 1122222211110 0 0113
Q ss_pred EEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC
Q 006956 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357 (624)
Q Consensus 278 iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfP 357 (624)
+.+. ++|++-...- |.+|+..+ |.++.||+||.-+++-+.-||+||...+-+.+...+++ |+.+.+++|-.+|
T Consensus 225 iTIE-TRPDyC~~~H--l~~ML~YG--CTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdLP 297 (554)
T KOG2535|consen 225 ITIE-TRPDYCLKRH--LSDMLTYG--CTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDLP 297 (554)
T ss_pred EEee-cCcccchhhh--HHHHHhcC--CceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhcc--CceeehhhCCCCC
Confidence 4444 6888655432 45555544 99999999999999999999999999999999999999 9999999999999
Q ss_pred CCC-HHHHHHHHHHHHHc--CCCeEEEEEeeeCCCCccccCC------CCCHHHHHHHHHHHHHHH
Q 006956 358 GET-DEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMK------KVPSAVVKKRSRELTSVF 414 (624)
Q Consensus 358 GET-eedf~eTl~fl~el--~~~~v~i~~ysP~PGTpa~~~~------~vp~~~~~~R~~~L~~l~ 414 (624)
.-. +.|+++-.++.+.- +.|-+.+++--...||-+|.++ ..|+.....-..++..+.
T Consensus 298 NVg~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalV 363 (554)
T KOG2535|consen 298 NVGMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALV 363 (554)
T ss_pred CCchhhhHHHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhC
Confidence 854 45666666776654 4578889998899999988765 256655444444444443
No 148
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.02 E-value=0.00027 Score=76.98 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=128.4
Q ss_pred CCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHC-CCcE--EEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceE
Q 006956 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278 (624)
Q Consensus 202 Cp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~-Gvke--I~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~i 278 (624)
|+.+|.||-.+......+.++.+.+.+-++.+.+. +... |.+.|......|.+ +.+.+..+.+... ...++
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~----f~~~~~~l~~k~~--~~~~i 91 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLD----FYRKAVALQQKYA--NGKTI 91 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchHH----HHHHHHHHHHHHh--cCCee
Confidence 99999999877543333356766666667777664 4355 66667666665543 4555555544443 35566
Q ss_pred EEee-cCCcchhHHHHHHHHHHhCCCcceeccccCCCC---CHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 006956 279 RIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG---SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (624)
Q Consensus 279 ri~~-~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSg---sd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv 354 (624)
..++ +|...+++.. .+.++..++ .|-|.|... +|.....-+-.-|.+.+.+.++.++++ ++.+.+-+.
T Consensus 92 ~~siqTNg~LL~~e~---~e~l~~~~~--~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~v~~~~~~v- 163 (378)
T COG0641 92 SNALQTNGTLLNDEW---AEFLAEHDF--LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH--GVDFNTLTV- 163 (378)
T ss_pred EEEEEEcccccCHHH---HHHHHhcCc--eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc--CCcEEEEEE-
Confidence 6554 4777777654 445544443 555555443 333322222235799999999999998 887776666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHH
Q 006956 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 415 (624)
Q Consensus 355 GfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~ 415 (624)
...++.+...+.++++.+.+...+.+.+..+..++.....+ +++.++-.+.+..+.+.+.
T Consensus 164 -v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~ 224 (378)
T COG0641 164 -VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWV 224 (378)
T ss_pred -EchhHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999878877666655555421123 6777766666665555554
No 149
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=97.92 E-value=0.00067 Score=72.09 Aligned_cols=185 Identities=19% Similarity=0.262 Sum_probs=128.7
Q ss_pred CCceEEEEEeCCCCCCCCCCcccCccCCC-cccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCccCCHHHHHHHH
Q 006956 189 RNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (624)
Q Consensus 189 ~~~~~a~I~isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l 266 (624)
..+..+.+..+.+|+-.|.||.-..+-|. -..++.+++-.-++++.+. -+++|.|+|.|..... | ..|..|+++|
T Consensus 108 rY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls-~--~~L~~ll~~L 184 (369)
T COG1509 108 RYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLS-D--KKLEWLLKRL 184 (369)
T ss_pred ecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccC-H--HHHHHHHHHH
Confidence 34567888999999999999987665553 2335888888888888775 6899999998877643 2 4688999999
Q ss_pred HHhCCCCCCceEEEeec----CCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006956 267 VAELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~----~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (624)
.+ ++ ....+||++- .|..|++. |.+++.....-.++..=+.|.. .. ..+..+++++++++
T Consensus 185 ~~-Ip--Hv~iiRi~TR~pvv~P~RIt~~---L~~~l~~~~~~v~~~tH~NHp~---------Ei-t~e~~~A~~~L~~a 248 (369)
T COG1509 185 RA-IP--HVKIIRIGTRLPVVLPQRITDE---LCEILGKSRKPVWLVTHFNHPN---------EI-TPEAREACAKLRDA 248 (369)
T ss_pred hc-CC--ceeEEEeecccceechhhccHH---HHHHHhccCceEEEEcccCChh---------hc-CHHHHHHHHHHHHc
Confidence 76 66 7889999963 55556654 4444443211122222222221 11 24788999999999
Q ss_pred CCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc
Q 006956 343 VPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 343 ~pgi~i~t-d~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~ 394 (624)
|+.+.- .++.--=.++.+.+.+.++-+...++.=-.+|..-+-+|+.-+.
T Consensus 249 --Gv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr 299 (369)
T COG1509 249 --GVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFR 299 (369)
T ss_pred --CceeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCcccee
Confidence 987543 44443348899999999999998887666667777888887553
No 150
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=97.76 E-value=0.00015 Score=66.63 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccccCcChhh--hcCCccE-EEcCCchhHHHHHHHHHhcC
Q 006956 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRDL--KELEGVS-IVGVQQIDRVVEVVEETLKG 168 (624)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~aq~~~e~--~~~~~d~-VvG~~~~~~l~ell~~~~~g 168 (624)
.++|+|++ ||.+.+. ..+..+++.+|+.+ .+||+||.|++..|+. .....|. +.|+++ ..++++++....|
T Consensus 38 ~~pdiv~~-S~~~~~~--~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE-~~~~~l~~~l~~g 113 (127)
T cd02068 38 LKPDVVGI-SLMTSAI--YEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE-ETFLKLLEELEEG 113 (127)
T ss_pred cCCCEEEE-eeccccH--HHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH-HHHHHHHHHHHcC
Confidence 68999999 5655543 25677777777765 6899999999999873 3445686 556655 7899999887665
Q ss_pred C
Q 006956 169 H 169 (624)
Q Consensus 169 ~ 169 (624)
+
T Consensus 114 ~ 114 (127)
T cd02068 114 E 114 (127)
T ss_pred C
Confidence 4
No 151
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.64 E-value=0.0014 Score=70.79 Aligned_cols=172 Identities=13% Similarity=0.127 Sum_probs=120.3
Q ss_pred CCCcccCccCCCcccCCHHHHHHHHHHHHHCCCc-----EEEEe-ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEE
Q 006956 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK-----EVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279 (624)
Q Consensus 206 CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~Gvk-----eI~l~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~ir 279 (624)
|.||.....--.-...|+..|.+|... +.|+. .+..+ +.+++.| .++.++.+.....+ .+.++|
T Consensus 44 C~~cy~~v~~~~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~d~~c~-----p~le~~~~r~~~~~---~d~~~r 113 (414)
T COG1625 44 CDDCYLSVNELDTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNGDTFCY-----PDLEPRGRRARLYY---KDDDIR 113 (414)
T ss_pred ccceeeEEecccCCCCCHhHhhccccc--ccccccccccceeecCCCCcccC-----cchhhhhhHHHhhc---CCccce
Confidence 999976543212245677888877753 12221 12222 2223333 46777888877644 256788
Q ss_pred EeecCCcchhH-HHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006956 280 IGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (624)
Q Consensus 280 i~~~~p~~i~~-~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (624)
++++.-..++. .+ ...+.. .+ ..-+.+.++|.++++.+.|-|....++.++.++++.++ ++.+.+++++= ||
T Consensus 114 L~~tsG~~~~lt~~--~~~i~~-~g-vdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~--~~~v~a~iVl~-PG 186 (414)
T COG1625 114 LSFTSGSGFTLTNR--AERIID-AG-VDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAER--CIEVHAQIVLC-PG 186 (414)
T ss_pred eeeeeccceeccch--HHHHHH-cC-CCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHh--hhheeeEEEEc-CC
Confidence 88876554432 11 122332 23 68899999999999999998999999999999999999 99999998874 88
Q ss_pred CC-HHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc
Q 006956 359 ET-DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 359 ET-eedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~ 394 (624)
=+ -+++.+|++-+.+.+...+.++.+.|.=.|....
T Consensus 187 vNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~ 223 (414)
T COG1625 187 VNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNR 223 (414)
T ss_pred cCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCC
Confidence 77 8999999999999999888888766665554433
No 152
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=97.42 E-value=0.00083 Score=60.59 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEEccccC
Q 006956 73 SDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQ 136 (624)
Q Consensus 73 ~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VVVgGc~aq 136 (624)
.-..++++.|++.||++... ..++|+|+| ||+.+. ....+.++++.+|+. +.+|++||.+++
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~i-S~~~~~-~~~~~~~l~~~~k~~~p~~~iv~GG~~~t 92 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGI-SVSMTP-NLPEAKRLARAIKERNPNIPIVVGGPHAT 92 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEE-EESSST-HHHHHHHHHHHHHTTCTTSEEEEEESSSG
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEE-EccCcC-cHHHHHHHHHHHHhcCCCCEEEEECCchh
Confidence 35678888888888876422 357899999 443332 234567778877776 458999999999
Q ss_pred cChh-hh-c-CCccE-EEcCCchhHHHHHH
Q 006956 137 GSRD-LK-E-LEGVS-IVGVQQIDRVVEVV 162 (624)
Q Consensus 137 ~~~e-~~-~-~~~d~-VvG~~~~~~l~ell 162 (624)
..|+ .. . ...|. ++|+++ ..+++++
T Consensus 93 ~~~~~~l~~~~~~D~vv~GegE-~~~~~l~ 121 (121)
T PF02310_consen 93 ADPEEILREYPGIDYVVRGEGE-EAFPELL 121 (121)
T ss_dssp HHHHHHHHHHHTSEEEEEETTS-SHHHH--
T ss_pred cChHHHhccCcCcceecCCChH-HhhcccC
Confidence 9987 33 3 45575 778887 4666653
No 153
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.15 E-value=0.01 Score=65.41 Aligned_cols=109 Identities=14% Similarity=0.207 Sum_probs=80.1
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCH-HHHHHHHHHHHHcC---CCeEE
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD-EDFNQTVNLIKEYK---FPQVH 380 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETe-edf~eTl~fl~el~---~~~v~ 380 (624)
..-+.+++.+.+++..+.|-+.-..+++++.++++.++ ||.+.+.+++ .||=++ +++++|++.+.++. .+.+.
T Consensus 139 lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~--~I~~h~qiVl-cPGiNDg~~L~~Ti~dL~~~~~~~~P~v~ 215 (433)
T TIGR03279 139 LSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQVVV-CPGINDGKHLERTLRDLAQFHDGDWPTVL 215 (433)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc--CCeEEEEEEE-cCCcCCHHHHHHHHHHHHhhcccCCCcee
Confidence 56788999999999998887666899999999999999 9999988776 488776 79999999999982 23333
Q ss_pred EEEeeeCCCCcc----ccCCCCCHHHHHHHHHHHHHHHHH
Q 006956 381 ISQFYPRPGTPA----ARMKKVPSAVVKKRSRELTSVFEA 416 (624)
Q Consensus 381 i~~ysP~PGTpa----~~~~~vp~~~~~~R~~~L~~l~~~ 416 (624)
--.-.|.==|.. +.+..+..+.+.+-.+.+...+++
T Consensus 216 S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ie~~q~~ 255 (433)
T TIGR03279 216 SVAVVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQTQ 255 (433)
T ss_pred EEEEEccccccCCCCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 333344444433 223356666666666666666654
No 154
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=97.10 E-value=0.0069 Score=62.73 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=101.5
Q ss_pred CCCCCCCCCcccCcc--CCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCce
Q 006956 200 VGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277 (624)
Q Consensus 200 rGCp~~CsFC~ip~~--rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~ 277 (624)
.||+++|.||.-.-. .|--+...++++.+-+..+.+.|++.|.|+|.|.+. +++.+|+.+......-...|
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp-------~lp~Ile~l~~~~~~iPvvw 198 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP-------HLPFILEALRYASENIPVVW 198 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCC-------chHHHHHHHHHHhcCCCEEE
Confidence 599999999987533 234456678998888888989999999999866443 45566666554221001233
Q ss_pred EEEeecCCcchhHHHHHHHHHHhCCCcceecccc-CCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 006956 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP-VQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQIATDIICG 355 (624)
Q Consensus 278 iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IG-lQSgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pgi~i~td~IvG 355 (624)
-.-+| .+.+ ..+++. + +.-|.+| +-=|+++--.+..+- .=.+-..+.+..+.+.+.|+-+.-=+
T Consensus 199 NSnmY-----~s~E---~l~lL~--g-vVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLV--- 264 (335)
T COG1313 199 NSNMY-----MSEE---TLKLLD--G-VVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLV--- 264 (335)
T ss_pred ecCCc-----cCHH---HHHHhh--c-cceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEe---
Confidence 22222 2222 222332 1 1222222 445677776555553 33455566666676664445555333
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEEee-eCCCCccccCC
Q 006956 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFY-PRPGTPAARMK 396 (624)
Q Consensus 356 fPGETeedf~eTl~fl~el~~~~v~i~~ys-P~PGTpa~~~~ 396 (624)
+||.=+.--..-++|+.+.-.+.+.++.+. -+|--.++++|
T Consensus 265 lPghlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eyp 306 (335)
T COG1313 265 LPGHLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYP 306 (335)
T ss_pred cCCchhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhch
Confidence 466544446778899998866555554332 23444555665
No 155
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.00 E-value=0.0077 Score=56.14 Aligned_cols=101 Identities=15% Similarity=0.250 Sum_probs=72.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (624)
.+|.+-|.|--.-..=...++..|+..||++++. .++||+|+| |+......+.+..+++.+++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~i--Ssl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGV--SSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE--cCchhhhHHHHHHHHHHHHhc
Confidence 4778888887666666788999999999998765 578999999 344444445678888888776
Q ss_pred C---CCEEEEccccCcC-hhhhcCCccEEEcCCchhHHHHHHH
Q 006956 125 K---KPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVE 163 (624)
Q Consensus 125 ~---~~VVVgGc~aq~~-~e~~~~~~d~VvG~~~~~~l~ell~ 163 (624)
+ .+|++||-.+... .++.++..|.+++.+. .+.+++.
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt--~~~~i~~ 121 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGT--PIPESAI 121 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCC--CHHHHHH
Confidence 4 4688999776543 2356667788887765 3444443
No 156
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=96.98 E-value=0.036 Score=55.90 Aligned_cols=153 Identities=13% Similarity=0.060 Sum_probs=103.6
Q ss_pred ccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 295 (624)
+..++++|++++..... .+-.-|.|+|.+...+. .-+.++++.+.+. + ....+. ++...-.+. +
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~----~fl~~l~~~~k~~----g-i~~~le-TnG~~~~~~---~ 83 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQA----EFATRFLQRLRLW----G-VSCAIE-TAGDAPASK---L 83 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCH----HHHHHHHHHHHHc----C-CCEEEE-CCCCCCHHH---H
Confidence 44789999999886432 23456889887665541 1236777777652 2 234444 222111122 2
Q ss_pred HHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
..++.. +..+.+-+=+.+++..+..- +.+.+.+++.++.+.+.-..+.+++-+|-|+ .++++++++..+|+.+++
T Consensus 84 ~~l~~~---~D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 84 LPLAKL---CDEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPLG 158 (213)
T ss_pred HHHHHh---cCEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHcC
Confidence 333321 45666778888888877664 3567899999999999833367788888776 578999999999999998
Q ss_pred CCeEEEEEeeeCCC
Q 006956 376 FPQVHISQFYPRPG 389 (624)
Q Consensus 376 ~~~v~i~~ysP~PG 389 (624)
+..+++.+|.|.--
T Consensus 159 ~~~~~llpyh~~g~ 172 (213)
T PRK10076 159 IKQIHLLPFHQYGE 172 (213)
T ss_pred CceEEEecCCccch
Confidence 88999999988643
No 157
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0033 Score=63.27 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=51.0
Q ss_pred EEEEEeCCCCCCCCCCcccCccCC-----CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHH
Q 006956 193 VEILPINVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG-----~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~ 267 (624)
..||.+ -|||.+|.||..+++.. .++..+.++|+++++.+. .+.+.|.|+|.+.... .++.+|++.+.
T Consensus 24 ~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~-----~~l~~Ll~~l~ 96 (212)
T COG0602 24 SVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQ-----PNLLELLELLK 96 (212)
T ss_pred eEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCc-----ccHHHHHHHHH
Confidence 345544 39999999999886643 467788999999998763 2445899999776332 35788888887
Q ss_pred H
Q 006956 268 A 268 (624)
Q Consensus 268 ~ 268 (624)
+
T Consensus 97 ~ 97 (212)
T COG0602 97 R 97 (212)
T ss_pred h
Confidence 5
No 158
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=96.50 E-value=0.0088 Score=55.15 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=39.2
Q ss_pred eCCCCCCCCCCcccCccCCC--cccCCHHHHHHHH-HHHHHCCCcEEEEeecCCCCC-CCCccCCHHHHHHHHHHh
Q 006956 198 INVGCLGACTYCKTKHARGH--LGSYTVESLVGRV-RTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 198 isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI-~~L~~~GvkeI~l~g~d~~~y-g~d~~~~l~eLL~~l~~~ 269 (624)
.+.||+++|.||..+..... ....+ .+.++++ +.+.+.++..|.|+|.+...+ .. ..+.++++.+.+.
T Consensus 11 ~t~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~---~~l~~i~~~~k~~ 82 (139)
T PF13353_consen 11 FTNGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELKNYGIKGIVLTGGEPLLHENY---DELLEILKYIKEK 82 (139)
T ss_dssp EEC--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSH---HHHHHHHHHHHHT
T ss_pred EcCcccccCcCcCCcccCccccccccc-chhhhhhhhHHhcCCceEEEEcCCCeeeeccH---hHHHHHHHHHHHh
Confidence 37789999999987655432 22233 4555554 444467999999999776551 11 3567888888765
No 159
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=96.39 E-value=0.0077 Score=57.19 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=49.3
Q ss_pred EEEEeCCCCCCCCCCcccCccCCC--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 194 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 194 a~I~isrGCp~~CsFC~ip~~rG~--~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
+.+-.-.|||.+|.||..+..... .+..+.++++++|+.+. ..+..|.|+|.+ ..+ ..+.+|++.+++
T Consensus 17 ~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE-l~~-----~~l~~ll~~lk~ 86 (147)
T TIGR02826 17 SLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE-WNR-----EALLSLLKIFKE 86 (147)
T ss_pred EEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh-cCH-----HHHHHHHHHHHH
Confidence 344455699999999998865322 34678999999998865 346789999987 221 347788888875
No 160
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.36 E-value=0.016 Score=52.46 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEEccccCc
Q 006956 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQG 137 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~aq~ 137 (624)
.-.++..|+..||++... ..++|+|+| ||+.+... ..+.++++.+|+.+ .+|++||-+++.
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~i-S~~~~~~~-~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGL-SGLLTTHM-TLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccccH-HHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 457788888999988653 467999999 66655443 46677777777663 568999999888
Q ss_pred Chh-hhcCCccEEEcCCc
Q 006956 138 SRD-LKELEGVSIVGVQQ 154 (624)
Q Consensus 138 ~~e-~~~~~~d~VvG~~~ 154 (624)
.++ +.....|.++....
T Consensus 94 ~~~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 94 DFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred hHHHHHHcCCeEEECCHH
Confidence 776 45667788887665
No 161
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=96.20 E-value=0.014 Score=52.44 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=31.1
Q ss_pred eCCCCCCCCCCcccCccC--CCcccCCHHHHHHHHHHHHHCCC--cEEEEeecCCCCC
Q 006956 198 INVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIADGV--KEVWLSSEDTGAY 251 (624)
Q Consensus 198 isrGCp~~CsFC~ip~~r--G~~Rsr~~e~Iv~EI~~L~~~Gv--keI~l~g~d~~~y 251 (624)
++.+|+.+|.||...... ......+.+++.+.++.+.+.+. ..|.|+|.+.+.+
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~ 61 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLY 61 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGS
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccc
Confidence 468999999999975432 23566788899888888888776 5699998766543
No 162
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.08 E-value=0.085 Score=49.48 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=69.2
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC-
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA- 124 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~- 124 (624)
++-+-|.|--....---.++..|++.||+++.. ..+||+|.+ ||..+. ....+.++++++++.
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~l-S~~~~~-~~~~~~~~~~~L~~~~ 82 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILV-SSLYGH-GEIDCRGLREKCIEAG 82 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cCcccc-CHHHHHHHHHHHHhcC
Confidence 444555554444555677888999999999764 567999999 555443 345677888888776
Q ss_pred --CCCEEEEccccCc--Ch-----hhhcCCccEEEc-CCchhHHHHHHHHH
Q 006956 125 --KKPLVVAGCVPQG--SR-----DLKELEGVSIVG-VQQIDRVVEVVEET 165 (624)
Q Consensus 125 --~~~VVVgGc~aq~--~~-----e~~~~~~d~VvG-~~~~~~l~ell~~~ 165 (624)
+.+|++||-.+.. .+ .+.++..|.|++ ....+.+++.|.+.
T Consensus 83 ~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 83 LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred CCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 4579999976432 12 234556677887 45566677666554
No 163
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=96.00 E-value=0.013 Score=52.95 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC---CCCEEEEccccCcC
Q 006956 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA---KKPLVVAGCVPQGS 138 (624)
Q Consensus 76 e~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~---~~~VVVgGc~aq~~ 138 (624)
-.++..|++.||++... ..++|+|.| ||+..... ...+.+.++++. +.+|++||.+++..
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~i-S~~~~~~~--~~~~~~~~~~~~~p~~~~ivvGG~~~t~~ 93 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGL-SALSTTHM--EAMKLVIEALKELGIDIPVVVGGAHPTAD 93 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEE-ecchHhHH--HHHHHHHHHHHhcCCCCeEEEeCCcCCcc
Confidence 45667778888876532 357999999 66655542 233333434332 57899999999999
Q ss_pred hhhhcCCccE-EEcCCchhHHHHHHH
Q 006956 139 RDLKELEGVS-IVGVQQIDRVVEVVE 163 (624)
Q Consensus 139 ~e~~~~~~d~-VvG~~~~~~l~ell~ 163 (624)
|+. ...|. ++|+++ ..++++++
T Consensus 94 ~~~--~~~d~~~~Ge~e-~~~~~l~~ 116 (125)
T cd02065 94 PEE--PKVDAVVIGEGE-YAGPALLE 116 (125)
T ss_pred ccc--cccceeeeCCeE-EEccccch
Confidence 876 34565 677776 35555543
No 164
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.56 E-value=0.065 Score=49.70 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEEcccc---
Q 006956 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVP--- 135 (624)
Q Consensus 76 e~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~a--- 135 (624)
..++..|++.||++++. .++||+|.+++-.-+ ....+.+.++.+++.+ .+|++||-.+
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~--~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~ 94 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGH--GEIDCKGLREKCDEAGLKDILLYVGGNLVVGK 94 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccC--CHHHHHHHHHHHHHCCCCCCeEEEECCCCCCh
Confidence 46788999999999765 578999999654333 2345566666666654 5799999743
Q ss_pred CcCh----hhhcCCccEEEcCCchhHHHHHHHH
Q 006956 136 QGSR----DLKELEGVSIVGVQQIDRVVEVVEE 164 (624)
Q Consensus 136 q~~~----e~~~~~~d~VvG~~~~~~l~ell~~ 164 (624)
+..+ ++.++..|.++|.+. .+.+++++
T Consensus 95 ~d~~~~~~~L~~~Gv~~vf~pgt--~~~~i~~~ 125 (128)
T cd02072 95 QDFEDVEKRFKEMGFDRVFAPGT--PPEEAIAD 125 (128)
T ss_pred hhhHHHHHHHHHcCCCEEECcCC--CHHHHHHH
Confidence 2222 245667788999876 34555544
No 165
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.55 E-value=0.1 Score=48.79 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEEccc--c
Q 006956 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCV--P 135 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~--a 135 (624)
-..++..|+++||++++. .++||+|.+++-.- .+...+.++++++++.| ++|++||-. +
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~--~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~ 95 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYG--HGEIDCKGLRQKCDEAGLEGILLYVGGNLVVG 95 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc--cCHHHHHHHHHHHHHCCCCCCEEEecCCcCcC
Confidence 367888999999999865 57899999966443 33445677777777775 467899953 3
Q ss_pred Cc-Ch----hhhcCCccEEEcCCc-hhHHHHHHHH
Q 006956 136 QG-SR----DLKELEGVSIVGVQQ-IDRVVEVVEE 164 (624)
Q Consensus 136 q~-~~----e~~~~~~d~VvG~~~-~~~l~ell~~ 164 (624)
.. .+ .+.++..|.|+|.+. .+.+.+.|..
T Consensus 96 ~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 96 KQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred hhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 32 22 245666788887654 3455555543
No 166
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.51 E-value=0.72 Score=47.22 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=101.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
...++.++.++-++.|.+.|+..|.+.+......- ....+..++++.+.+..+ ..++..+.+.. .+ .+..
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~-----~~~~~~l~~~~-~~---~i~~ 82 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVP-----NVKLQALVRNR-EK---GIER 82 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccC-----CcEEEEEccCc-hh---hHHH
Confidence 45669999999999999999999998875443111 112456788888876432 22332122211 11 2333
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-CCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFP-GETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~--t~e~~~e~I~~lr~~~pgi~i~td~IvGfP-GETeedf~eTl~fl~el 374 (624)
+.+. + ...+++.+-..+.......+|+. ..+...+.++.+++. |+.+..+++.-+. ..+.+.+.+.++.+.++
T Consensus 83 a~~~-g-~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 83 ALEA-G-VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred HHhC-C-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 3333 2 57788887433322334345543 678899999999999 9999988876663 48999999999999999
Q ss_pred CCCeEEEE
Q 006956 375 KFPQVHIS 382 (624)
Q Consensus 375 ~~~~v~i~ 382 (624)
+++.+.+.
T Consensus 159 g~~~i~l~ 166 (265)
T cd03174 159 GADEISLK 166 (265)
T ss_pred CCCEEEec
Confidence 98877753
No 167
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=95.35 E-value=0.17 Score=53.53 Aligned_cols=162 Identities=16% Similarity=0.246 Sum_probs=99.5
Q ss_pred EEEeCCCCCCCCCCcccCccC-CC-------cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHH
Q 006956 195 ILPINVGCLGACTYCKTKHAR-GH-------LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~r-G~-------~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l 266 (624)
.|-++-=||.+|-||-+...+ |+ .--.+.++|+.|+...-+.| +-++|.|...- ..+..+.++.+
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTGGdPl~~----ieR~~~~ir~L 103 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITGGDPLLE----IERTVEYIRLL 103 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccCCChHHH----HHHHHHHHHHH
Confidence 455666799999999876443 32 11234688888877665545 44666543221 13456778888
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc-ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006956 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV-YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v-~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg 345 (624)
++++. ....+++ |+++...++.. +..+. .+++ =-++|.+ ..+. ...+.+.+.+..+++. |
T Consensus 104 K~efG--~~fHiHL-YT~g~~~~~e~--l~~L~-eAGLDEIRfHp~--~~~~---------~~~e~~i~~l~~A~~~--g 164 (353)
T COG2108 104 KDEFG--EDFHIHL-YTTGILATEEA--LKALA-EAGLDEIRFHPP--RPGS---------KSSEKYIENLKIAKKY--G 164 (353)
T ss_pred HHhhc--cceeEEE-eeccccCCHHH--HHHHH-hCCCCeEEecCC--Cccc---------cccHHHHHHHHHHHHh--C
Confidence 77764 3455555 56666555543 33333 3331 1366665 1111 1245788888888888 7
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEe
Q 006956 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384 (624)
Q Consensus 346 i~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~y 384 (624)
+.+..- |-..||+ ++.+.+.++++.+.+++.++++.+
T Consensus 165 ~dvG~E-iPaipg~-e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 165 MDVGVE-IPAIPGE-EEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred ccceee-cCCCcch-HHHHHHHHHHHHhcccceeeeeee
Confidence 665443 3455775 566778899999999988888754
No 168
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.21 E-value=0.7 Score=44.83 Aligned_cols=156 Identities=16% Similarity=0.225 Sum_probs=91.2
Q ss_pred CCCCCCCCCCcccCccCC----CcccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCC
Q 006956 199 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (624)
Q Consensus 199 srGCp~~CsFC~ip~~rG----~~Rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~ 273 (624)
.-||+..|.||-...-+- .....+|++|.+.+..+.+ .|..-+.+.|..... ++ +.+.++++-+ +
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~l-~~---EHvlevIeLl----~-- 117 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPIL-GR---EHVLEVIELL----V-- 117 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCccc-cH---HHHHHHHHhc----c--
Confidence 579999999997622111 1345679999998877765 599988888765432 32 2233333332 2
Q ss_pred CCceEEEeecCCcch--hHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCC---HHHHHHHHHHHHHhCCCCEE
Q 006956 274 GSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT---LSDFRTVVDTLIELVPGMQI 348 (624)
Q Consensus 274 ~~~~iri~~~~p~~i--~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t---~e~~~e~I~~lr~~~pgi~i 348 (624)
....-+. +|...+ +..+ ..++..+.++ .+.+.+--.+++...++.- .+ ..--+++++.+.+. |+.+
T Consensus 118 -~~tFvlE-TNG~~~g~drsl--v~el~nr~nv--~vRVsvKG~dpesF~kIT~-asp~~F~~QL~aLr~L~~~--g~rf 188 (228)
T COG5014 118 -NNTFVLE-TNGLMFGFDRSL--VDELVNRLNV--LVRVSVKGWDPESFEKITG-ASPEYFRYQLKALRHLHGK--GHRF 188 (228)
T ss_pred -CceEEEE-eCCeEEecCHHH--HHHHhcCCce--EEEEEecCCCHHHHHHHhc-CChHHHHHHHHHHHHHHhc--Ccee
Confidence 1222222 343333 3333 3334444543 5667788888888866641 22 44456777777777 8888
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
..-++.+|-.| +...+....+-+++
T Consensus 189 ~pA~~~~f~~E--d~~k~Lak~Lgehp 213 (228)
T COG5014 189 WPAVVYDFFRE--DGLKELAKRLGEHP 213 (228)
T ss_pred eehhhhccchh--hhHHHHHHHhccCC
Confidence 88899998432 22233444454443
No 169
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.67 E-value=0.31 Score=45.99 Aligned_cols=102 Identities=19% Similarity=0.342 Sum_probs=70.4
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
.++|-+-++|=----.-...++..|++.||++... .+++|+|+|+ +.......-+-.+++.+|+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvS--sl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVS--SLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEE--eccchHHHHHHHHHHHHHH
Confidence 45778888883333344678999999999998654 5789999994 4444444566677788888
Q ss_pred CCC---CEEEEccccCcCh-hhhcCCccEEEcCCchhHHHHHHH
Q 006956 124 AKK---PLVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVE 163 (624)
Q Consensus 124 ~~~---~VVVgGc~aq~~~-e~~~~~~d~VvG~~~~~~l~ell~ 163 (624)
.|. .|++||-.|.... +++++..|.+++.+- .+.+.+.
T Consensus 90 ~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt--~~~~~~~ 131 (143)
T COG2185 90 AGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGT--PIEEALS 131 (143)
T ss_pred hCCcceEEeecCccCchhHHHHHHhCcceeeCCCC--CHHHHHH
Confidence 874 4678898877653 466777788887753 3444443
No 170
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=94.67 E-value=0.076 Score=50.63 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCCCCCCCCcccCccCC--CcccCC---HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh
Q 006956 200 VGCLGACTYCKTKHARG--HLGSYT---VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (624)
Q Consensus 200 rGCp~~CsFC~ip~~rG--~~Rsr~---~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~ 269 (624)
.|||.+|.||..|.... .-...+ +++|++++.... .+..|.|+|.+...... ...+.++++.+.+.
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~--~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP--LIDGLTLSGGDPLYPRN--VEELIELVKKIKAE 93 (154)
T ss_pred CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC--CcCeEEEeChhhCCCCC--HHHHHHHHHHHHHh
Confidence 69999999999886542 124566 555665554321 35679999987765420 02467777777654
No 171
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.38 E-value=0.27 Score=44.93 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEEccccCcC
Q 006956 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQGS 138 (624)
Q Consensus 76 e~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~---~~VVVgGc~aq~~ 138 (624)
-.++..|+..||+++.. ..+||+|+| |++- ......+.++++++++.+ .+|++||-.+...
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~i-S~~~-~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGL-SSLS-GGHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cccc-hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 45667788899998654 467999999 4443 344567888888888874 4688898544322
Q ss_pred h-hhhcCCccEEEcCCc
Q 006956 139 R-DLKELEGVSIVGVQQ 154 (624)
Q Consensus 139 ~-e~~~~~~d~VvG~~~ 154 (624)
. .+.+...|.+++.+.
T Consensus 95 ~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 95 YELLKEMGVAEIFGPGT 111 (122)
T ss_pred HHHHHHCCCCEEECCCC
Confidence 2 234566788887765
No 172
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=93.51 E-value=0.22 Score=51.19 Aligned_cols=183 Identities=16% Similarity=0.291 Sum_probs=118.3
Q ss_pred EEeCCCCCCCCCCcccCccCC---CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC
Q 006956 196 LPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (624)
Q Consensus 196 I~isrGCp~~CsFC~ip~~rG---~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 272 (624)
|..+.-|+.+|.||.....+. +.+.....+++.-+..++.+|+..+.|++.+.... .| +.+....+.. ++
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-~d----i~~i~~g~~~-l~- 87 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-QD----IVPIVAGLSS-LP- 87 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-cc----ccchhhhhhc-cc-
Confidence 456778999999998765331 24556688888877778889999999998776654 33 3444555543 43
Q ss_pred CCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh--CCCCEEEE
Q 006956 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL--VPGMQIAT 350 (624)
Q Consensus 273 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~--~pgi~i~t 350 (624)
+...+.+. ++.-.+...+.++ .+.+ ...+.+.+.+....-...+-|..+...+...++...+. .| ..+..
T Consensus 88 -gLks~~IT-tng~vl~R~lp~l----hkag-lssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~p-vkvn~ 159 (323)
T KOG2876|consen 88 -GLKSIGIT-TNGLVLARLLPQL----HKAG-LSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNP-VKVNC 159 (323)
T ss_pred -chhhhcee-ccchhhhhhhhHH----Hhhc-ccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCC-cceee
Confidence 45555554 2221122222222 2233 67888999988888888888888889999999988865 23 55666
Q ss_pred EEEEcCCCCCHHHHHHHHHHHH--HcCCCeEEEEEeeeCCCCccccCCCCC
Q 006956 351 DIICGFPGETDEDFNQTVNLIK--EYKFPQVHISQFYPRPGTPAARMKKVP 399 (624)
Q Consensus 351 d~IvGfPGETeedf~eTl~fl~--el~~~~v~i~~ysP~PGTpa~~~~~vp 399 (624)
-++=|+-|.. ..+|+. +.++-.+.+-.|+|.-|.....-.-+|
T Consensus 160 v~~k~~n~~e------v~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIp 204 (323)
T KOG2876|consen 160 VVMKGLNEDE------VFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIP 204 (323)
T ss_pred EEEeccCCCc------ccceeeecCCCCcceEEEEecccCCCccccccccc
Confidence 6677775542 334433 334455777889999887543222455
No 173
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=93.45 E-value=0.52 Score=44.97 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCCCCCCCCcccCccCCC--cccCC---HHHHHHHHHHHHHCCC--cEEEEeecCCCCCCCCccCCHHHHHHHHHHhC
Q 006956 200 VGCLGACTYCKTKHARGH--LGSYT---VESLVGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (624)
Q Consensus 200 rGCp~~CsFC~ip~~rG~--~Rsr~---~e~Iv~EI~~L~~~Gv--keI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l 270 (624)
.|||++|.||..+..... -+..+ .++|++++. ..+. ..|.|+|.+..... . ...+.++++++.+..
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~---~~~~~~~gvt~sGGEPl~~~-~-~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLN---DTRIKRQGLSLSGGDPLHPQ-N-VPDILKLVQRVKAEC 96 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHH---HhCCCCCcEEEECCCccchh-h-HHHHHHHHHHHHHHC
Confidence 899999999988765321 11123 344444433 3333 56889987764321 1 124566777776654
No 174
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.33 E-value=3.1 Score=45.10 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=90.5
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 295 (624)
-.+.|.++-++-++.|.+.|++.|-.... ...+..+ .+-.++++.+.. .. + .. +..+-+ ..+ .+
T Consensus 62 g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~---vspk~vPqmad~~ev~~~i~~-~~--~-~~--~~~l~~--n~~---di 127 (347)
T PLN02746 62 KNIVPTSVKVELIQRLVSSGLPVVEATSF---VSPKWVPQLADAKDVMAAVRN-LE--G-AR--FPVLTP--NLK---GF 127 (347)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccccHHHHHHHHHh-cc--C-Cc--eeEEcC--CHH---HH
Confidence 46789999999999999999999986521 1111000 234567777754 22 2 22 222223 112 23
Q ss_pred HHHHhCCCcceeccccCCCCCHHHHHh-hcCC--CCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCC---HHHHHHH
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVLSA-MNRE--YTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGET---DEDFNQT 367 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vLk~-M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGET---eedf~eT 367 (624)
...+..+ ...+++.+ |.||..++. +++. ...+.+.++++.++++ |+.+..++ .+|.|.++ .+.+.+.
T Consensus 128 e~A~~~g--~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~is~~fg~p~~~r~~~~~l~~~ 202 (347)
T PLN02746 128 EAAIAAG--AKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH--SIPVRGYVSCVVGCPIEGPVPPSKVAYV 202 (347)
T ss_pred HHHHHcC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecCCccCCCCHHHHHHH
Confidence 3334332 57888888 888876644 4443 2445566788999998 98887666 67888774 4556666
Q ss_pred HHHHHHcCCCeEEE
Q 006956 368 VNLIKEYKFPQVHI 381 (624)
Q Consensus 368 l~fl~el~~~~v~i 381 (624)
++.+.+.+.+.+.+
T Consensus 203 ~~~~~~~Gad~I~l 216 (347)
T PLN02746 203 AKELYDMGCYEISL 216 (347)
T ss_pred HHHHHHcCCCEEEe
Confidence 66677778877654
No 175
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=92.68 E-value=0.93 Score=53.64 Aligned_cols=102 Identities=15% Similarity=0.254 Sum_probs=70.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
.++|.+-|+|--.-..=...+...|+..||++... .++||+|+| |+-.....+.+..+++.+|+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvl--cs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGV--SSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEE--eccchhhHHHHHHHHHHHHh
Confidence 35899999999755555678999999999998643 267999999 44443344567788888888
Q ss_pred CCC---CEEEEccccCcCh-hhhcCCccEEEcCCchhHHHHHHH
Q 006956 124 AKK---PLVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVE 163 (624)
Q Consensus 124 ~~~---~VVVgGc~aq~~~-e~~~~~~d~VvG~~~~~~l~ell~ 163 (624)
.|. +|++||-.+.... .+.+...|.++..+. .+.++|.
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~--d~~~~L~ 701 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGT--VIADAAI 701 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCC--CHHHHHH
Confidence 864 5788887544322 345666787776654 2344443
No 176
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=91.67 E-value=0.5 Score=47.00 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC----CCEEEEccccC
Q 006956 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVPQ 136 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~----~~VVVgGc~aq 136 (624)
...++..|+..||++++. ..++|+|.+ ||+.+... ..+.++++.+|+.+ .+|++||...+
T Consensus 99 ~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~l-S~~~~~~~-~~~~~~i~~lr~~~~~~~~~i~vGG~~~~ 176 (201)
T cd02070 99 KNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGL-SALMTTTM-GGMKEVIEALKEAGLRDKVKVMVGGAPVN 176 (201)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccccH-HHHHHHHHHHHHCCCCcCCeEEEECCcCC
Confidence 577888999999998753 467999999 66665543 45777778777664 47999998765
Q ss_pred cChhh-hcCCccEEE
Q 006956 137 GSRDL-KELEGVSIV 150 (624)
Q Consensus 137 ~~~e~-~~~~~d~Vv 150 (624)
. +. ..+.+|...
T Consensus 177 ~--~~~~~~GaD~~~ 189 (201)
T cd02070 177 Q--EFADEIGADGYA 189 (201)
T ss_pred H--HHHHHcCCcEEE
Confidence 3 33 344445443
No 177
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=90.88 E-value=8.8 Score=40.47 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=89.8
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
-...+.++.++-++.|.+.|++.|-+..-....+-... .+-.+.++.+.+ .+ ... +..+.+. . ..+..
T Consensus 20 ~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~-~d~~e~~~~l~~-~~---~~~--~~~l~~~--~---~~ie~ 87 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQM-ADAAEVMAGIQR-RP---GVT--YAALTPN--L---KGLEA 87 (287)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCccccccc-ccHHHHHHhhhc-cC---CCe--EEEEecC--H---HHHHH
Confidence 45788999999999999999999987521100000001 123566666653 22 222 2223331 1 22333
Q ss_pred HHhCCCcceeccccCCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE--cCCCC---CHHHHHHHHH
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTVN 369 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~v-Lk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~Iv--GfPGE---Teedf~eTl~ 369 (624)
.++.+ ...+++.+ |.|+.. .+.+++. ...+.+.++++.+++. |+.+...+.+ |-|.+ +++.+.+.++
T Consensus 88 A~~~g--~~~v~i~~-~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~--g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 88 ALAAG--ADEVAVFA-SASEAFSQKNINCSIAESLERFEPVAEAAKQA--GVRVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHcC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 33332 45666665 555543 3455554 2445688899999999 9888777764 55766 6778888888
Q ss_pred HHHHcCCCeEEE
Q 006956 370 LIKEYKFPQVHI 381 (624)
Q Consensus 370 fl~el~~~~v~i 381 (624)
.+.+.+.+.+.+
T Consensus 163 ~~~~~G~d~i~l 174 (287)
T PRK05692 163 RLFALGCYEISL 174 (287)
T ss_pred HHHHcCCcEEEe
Confidence 888889887654
No 178
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=90.51 E-value=10 Score=39.77 Aligned_cols=149 Identities=13% Similarity=0.155 Sum_probs=89.2
Q ss_pred CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006956 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (624)
Q Consensus 217 ~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 296 (624)
...+.+.++-++-++.|.+.|+++|-+..--...+.... .+..++++.+.. . . ..++..+.+. .+ .+.
T Consensus 13 ~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~-~d~~~~~~~l~~-~---~--~~~~~~~~~~--~~---dv~ 80 (274)
T cd07938 13 EKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQM-ADAEEVLAGLPR-R---P--GVRYSALVPN--LR---GAE 80 (274)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc-CCHHHHHhhccc-C---C--CCEEEEECCC--HH---HHH
Confidence 346789999999999999999999987521000000000 123445555432 1 1 2233323232 12 233
Q ss_pred HHHhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHHH
Q 006956 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVN 369 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~I--vGfPGE---Teedf~eTl~ 369 (624)
..++.+ ...+++.+-+.+....+.+++. ...+...+.++.+++. |+.+...+. +|.|.+ +.+.+.+.++
T Consensus 81 ~A~~~g--~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~--G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~ 156 (274)
T cd07938 81 RALAAG--VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAA--GLRVRGYVSTAFGCPYEGEVPPERVAEVAE 156 (274)
T ss_pred HHHHcC--cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeEecCCCCCCCCHHHHHHHHH
Confidence 334332 4667776655444445666665 3567788889999998 988777666 555655 4566677777
Q ss_pred HHHHcCCCeEEE
Q 006956 370 LIKEYKFPQVHI 381 (624)
Q Consensus 370 fl~el~~~~v~i 381 (624)
.+.+.+.+.+.+
T Consensus 157 ~~~~~Ga~~i~l 168 (274)
T cd07938 157 RLLDLGCDEISL 168 (274)
T ss_pred HHHHcCCCEEEE
Confidence 777888876654
No 179
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=88.90 E-value=0.23 Score=53.79 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=42.7
Q ss_pred CCCCCCCCC-ceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccc
Q 006956 50 SLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP 109 (624)
Q Consensus 50 ~~~~~~~~~-~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ 109 (624)
...+++|+. .+..++|+||..|..|++++.+.|++.|| |++.+-+-+++..
T Consensus 386 ~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgY---------dv~~lFaysmR~k 437 (552)
T KOG2492|consen 386 HIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGY---------DVVFLFAYSMREK 437 (552)
T ss_pred HHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhcc---------CeeeeEEeeeccc
Confidence 557889985 79999999999999999999999999998 5565556677543
No 180
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=88.78 E-value=1 Score=44.69 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC----CCEEEEcccc
Q 006956 74 DSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVP 135 (624)
Q Consensus 74 Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~----~~VVVgGc~a 135 (624)
-.-.++..|+..||+++.- ..++|+|.+ ||+.+... ..+.++++++++.+ .+|+|||-..
T Consensus 100 G~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~l-S~~~~~~~-~~~~~~i~~l~~~~~~~~v~i~vGG~~~ 177 (197)
T TIGR02370 100 GKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTG-SALMTTTM-YGQKDINDKLKEEGYRDSVKFMVGGAPV 177 (197)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccccccCH-HHHHHHHHHHHHcCCCCCCEEEEEChhc
Confidence 3566778899999999754 567999999 77766654 35788888887773 4799999654
Q ss_pred CcChhh-hcCCccE
Q 006956 136 QGSRDL-KELEGVS 148 (624)
Q Consensus 136 q~~~e~-~~~~~d~ 148 (624)
.+++ ..+.+|.
T Consensus 178 --~~~~~~~~gad~ 189 (197)
T TIGR02370 178 --TQDWADKIGADV 189 (197)
T ss_pred --CHHHHHHhCCcE
Confidence 3554 3444443
No 181
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=88.22 E-value=22 Score=36.95 Aligned_cols=142 Identities=12% Similarity=0.062 Sum_probs=89.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
-...+.++.++-++.|.+.|++.|-+.. +... +...+.++.+.. .. ....+ .....+. .+. +..
T Consensus 16 ~~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~-~~--~~~~v-~~~~r~~--~~d---i~~ 79 (262)
T cd07948 16 NAFFDTEDKIEIAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAK-LG--LKAKI-LTHIRCH--MDD---ARI 79 (262)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHh-CC--CCCcE-EEEecCC--HHH---HHH
Confidence 4678999999999999999999998864 2222 234556666654 22 11222 2223332 122 333
Q ss_pred HHhCCCcceeccccCCCCCHHHHH-hhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk-~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
.... + ...+++.+ +.|+..++ .+++. ...+.+.+.++.+++. |+.+..++.-.| +-+.+.+.+.++.+.++
T Consensus 80 a~~~-g-~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (262)
T cd07948 80 AVET-G-VDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSSEDSF-RSDLVDLLRVYRAVDKL 153 (262)
T ss_pred HHHc-C-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeeC-CCCHHHHHHHHHHHHHc
Confidence 3332 2 45666655 66665554 34433 3455677778999998 999888887666 33478888888899999
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+++.+.+
T Consensus 154 g~~~i~l 160 (262)
T cd07948 154 GVNRVGI 160 (262)
T ss_pred CCCEEEE
Confidence 8886543
No 182
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=87.84 E-value=18 Score=37.33 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=86.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeec-CCcchhHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-NPPFILEHLKEIAE 297 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~-~p~~i~~~l~el~~ 297 (624)
...+.++.++-++.|.+.|++.|-+. +...+. .-.+.++.+.+..+ + .++... ++. .+. +..
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g---~p~~~~----~~~e~~~~l~~~~~--~---~~~~~~~r~~--~~~---v~~ 77 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVG---IPAMGE----EEREAIRAIVALGL--P---ARLIVWCRAV--KED---IEA 77 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---cCCCCH----HHHHHHHHHHhcCC--C---CEEEEeccCC--HHH---HHH
Confidence 56789999999999999999998874 222222 12467777765322 1 223222 221 122 222
Q ss_pred HHhCCCcceeccccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
.... + ...+++.+ |.|+.-+ +.+|+. ...+.+.+.++.+++. |+.+...++... .-+++.+.+.++.+.+.
T Consensus 78 a~~~-g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 78 ALRC-G-VTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR--GLFVSVGAEDAS-RADPDFLIEFAEVAQEA 151 (259)
T ss_pred HHhC-C-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEeeccCC-CCCHHHHHHHHHHHHHC
Confidence 2332 2 56677766 5665543 566654 3446677888999998 887765554433 23577778888888888
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+.+.+.+
T Consensus 152 G~~~i~l 158 (259)
T cd07939 152 GADRLRF 158 (259)
T ss_pred CCCEEEe
Confidence 8876543
No 183
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=86.32 E-value=1.8 Score=43.69 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccc
Q 006956 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCV 134 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~ 134 (624)
-..++..|+..||++++. ..+||+|.+ |++.+.. ...+.+.++++++.+ .+|++||-.
T Consensus 105 ~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~l-S~~~~~~-~~~~~~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 105 KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGL-SGLLVPS-LDEMVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccchhcc-HHHHHHHHHHHHhcCCCCeEEEEChh
Confidence 456778889999999764 467999999 6665544 346778888887764 579999953
No 184
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=85.72 E-value=28 Score=38.21 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=87.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
.+.+.++.++-++.|.+.|++.|-+. +...+. .-.+.++.+.+. +. ..++...... ..+. +..+
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~~~----~~~e~i~~i~~~----~~-~~~i~~~~r~-~~~d---i~~a 84 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG---FPAVSE----DEKEAIKAIAKL----GL-NASILALNRA-VKSD---IDAS 84 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEe---CCCcCh----HHHHHHHHHHhc----CC-CeEEEEEccc-CHHH---HHHH
Confidence 57899999999999999999999864 333322 124677777653 11 2333322221 1222 3333
Q ss_pred HhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCC
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 376 (624)
... + ...+++.+-+.+-.+.+.+++. ...+.+.+.++.+++. |+.+..+..-+. --+.+.+.+.++.+.+.+.
T Consensus 85 ~~~-g-~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~--G~~v~~~~ed~~-r~~~~~l~~~~~~~~~~Ga 159 (378)
T PRK11858 85 IDC-G-VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDH--GLYVSFSAEDAS-RTDLDFLIEFAKAAEEAGA 159 (378)
T ss_pred HhC-C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeccCC-CCCHHHHHHHHHHHHhCCC
Confidence 333 2 5677777744443444556653 2445666788889888 887776655443 3457777888888888888
Q ss_pred CeEEE
Q 006956 377 PQVHI 381 (624)
Q Consensus 377 ~~v~i 381 (624)
+.+.+
T Consensus 160 ~~I~l 164 (378)
T PRK11858 160 DRVRF 164 (378)
T ss_pred CEEEE
Confidence 87654
No 185
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=85.35 E-value=50 Score=34.35 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=87.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCC-CCCCCc--cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTG-AYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~-~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 295 (624)
...+.++.++-++.|.+.|+..|-+.-.... .+.... ..+ .+.++++.+... ....+.. +.++...... .+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~-~~~~~~~~~~--~l 88 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSK--GNTKIAV-MVDYGNDDID--LL 88 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhc--cCCEEEE-EECCCCCCHH--HH
Confidence 4678999999999999999998876511111 111110 011 455666654321 1233332 2444432221 13
Q ss_pred HHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
.... ..+ ...+++.+ +....+...+.++.+++. |+.+...++..+ +-+++.+.+.++.+.+.+
T Consensus 89 ~~a~-~~g-v~~iri~~------------~~~~~~~~~~~i~~ak~~--G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 89 EPAS-GSV-VDMIRVAF------------HKHEFDEALPLIKAIKEK--GYEVFFNLMAIS-GYSDEELLELLELVNEIK 151 (266)
T ss_pred HHHh-cCC-cCEEEEec------------ccccHHHHHHHHHHHHHC--CCeEEEEEEeec-CCCHHHHHHHHHHHHhCC
Confidence 2222 222 45566654 224688999999999999 998888888776 467899999999999999
Q ss_pred CCeEEE
Q 006956 376 FPQVHI 381 (624)
Q Consensus 376 ~~~v~i 381 (624)
++.+.+
T Consensus 152 ~~~i~l 157 (266)
T cd07944 152 PDVFYI 157 (266)
T ss_pred CCEEEE
Confidence 887654
No 186
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=85.32 E-value=2 Score=42.22 Aligned_cols=71 Identities=24% Similarity=0.539 Sum_probs=44.7
Q ss_pred EEEEec--CCccChhHHHHHHHH-----HHhcCceee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEE
Q 006956 61 IYMKTF--GCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVV 130 (624)
Q Consensus 61 v~i~Tl--GC~~N~~Dse~~~~~-----L~~~G~~~~-~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVV 130 (624)
++..++ || -|.|.++.. +++.|+..+ ..+..||+++| |=+|+......+.++.+.. +.++ |.+
T Consensus 43 lw~~~~~~~C----C~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllV-tG~VT~~m~~~l~~~~e~~--p~pK~VIAv 115 (182)
T PRK14816 43 LWPLTFATSC----CGIEFMALGAARYDMARFGFEVARASPRQADMIMV-CGTITNKMAPVLKRLYDQM--ADPKYVIAV 115 (182)
T ss_pred cceeeeCcch----HHHHHHHhcCccccHHHhCccccCCCCCcceEEEE-ecCCcchhHHHHHHHHHhc--CCCCEEEEe
Confidence 344444 67 888887643 456677665 78999999999 5578776444444443332 3344 447
Q ss_pred EccccCcC
Q 006956 131 AGCVPQGS 138 (624)
Q Consensus 131 gGc~aq~~ 138 (624)
|-|..+..
T Consensus 116 GsCA~~GG 123 (182)
T PRK14816 116 GGCAVSGG 123 (182)
T ss_pred ccccccCC
Confidence 77876554
No 187
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=84.99 E-value=2.2 Score=41.49 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=50.2
Q ss_pred ceEEEEecCCccChhHHHHHHH-----HHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~-----~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVg 131 (624)
..+++.++|+ |=-|.|.++- .+++.|+..+..+..||+++| |=+|+......+.++.++. +.+| |.+|
T Consensus 31 ~Slw~~~~~t--~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlV-tG~vT~km~~~l~~~yeqm--PePK~VIA~G 105 (173)
T PRK14818 31 SSLYYLTFGL--ACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIV-AGTLTYKMAERARLLYDQM--PEPKYVISMG 105 (173)
T ss_pred CCceeeEeCC--ccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEE-eCcCccccHHHHHHHHHhC--CCCCEEEEec
Confidence 3567777774 3377777654 356778888999999999999 6688877655555555443 3455 3477
Q ss_pred ccccCc
Q 006956 132 GCVPQG 137 (624)
Q Consensus 132 Gc~aq~ 137 (624)
.|..+.
T Consensus 106 ~CA~sG 111 (173)
T PRK14818 106 SCSNCG 111 (173)
T ss_pred cccccC
Confidence 786554
No 188
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=84.62 E-value=7.7 Score=32.45 Aligned_cols=55 Identities=33% Similarity=0.421 Sum_probs=42.1
Q ss_pred CCCcEEEEEEEEEecC--Ceee-eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEec
Q 006956 423 MEGRVERIWITEIAAD--GIHL-GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 479 (624)
Q Consensus 423 ~vG~~~~VLve~~~~~--g~~~-~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~ 479 (624)
-.|.+++|-|++..+. |... .-+.||++ +...|+.++|+|+++.+..-.|++++.
T Consensus 14 eeGe~y~V~I~d~g~~GDGiarveGfvVFVp--~a~~Gd~V~vkI~~v~~~~afaevve~ 71 (73)
T COG3269 14 EEGETYEVEIEDVGDQGDGIARVEGFVVFVP--GAEVGDEVKVKITKVKPNFAFAEVVER 71 (73)
T ss_pred ccCCEEEEEEEEeccCCCceEEEEEEEEEeC--CCCCCCeeeEEEEEeeccceeeEEeec
Confidence 3699999999988643 4333 33346665 446899999999999999999998865
No 189
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=83.78 E-value=56 Score=35.28 Aligned_cols=139 Identities=13% Similarity=0.124 Sum_probs=87.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEee-----cCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSS-----EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g-----~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 293 (624)
...+.+++++-++.|.+.|+..|-+.- .....||... ..=.+.++++.+..+ ...+.. ++.|..-.. +
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e~i~~~~~~~~---~~~~~~-ll~pg~~~~--~ 91 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLEYIEAAADVVK---RAKVAV-LLLPGIGTV--H 91 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHHHHHHHHHhCC---CCEEEE-EeccCccCH--H
Confidence 457899999999999999999988751 1122333322 122466677766543 223322 234421111 2
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 373 (624)
.+......+ ...+.+.. +. ...+...+.++.+++. |..+...++..+ .-+++.+.+.++.+.+
T Consensus 92 dl~~a~~~g--vd~iri~~-~~-----------~e~d~~~~~i~~ak~~--G~~v~~~l~~s~-~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 92 DLKAAYDAG--ARTVRVAT-HC-----------TEADVSEQHIGMAREL--GMDTVGFLMMSH-MTPPEKLAEQAKLMES 154 (333)
T ss_pred HHHHHHHCC--CCEEEEEe-cc-----------chHHHHHHHHHHHHHc--CCeEEEEEEccc-CCCHHHHHHHHHHHHh
Confidence 233333332 45555554 11 1234678899999999 999888888875 5688999999999999
Q ss_pred cCCCeEEE
Q 006956 374 YKFPQVHI 381 (624)
Q Consensus 374 l~~~~v~i 381 (624)
++.+.+.+
T Consensus 155 ~Ga~~i~i 162 (333)
T TIGR03217 155 YGADCVYI 162 (333)
T ss_pred cCCCEEEE
Confidence 99887654
No 190
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=83.51 E-value=2.5 Score=40.11 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=37.3
Q ss_pred hHHHHHHHHH-----HhcC-ceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEEccccCc
Q 006956 73 SDSEYMAGQL-----SAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQG 137 (624)
Q Consensus 73 ~Dse~~~~~L-----~~~G-~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVgGc~aq~ 137 (624)
-|.|.++... ++.| ...+..+.+||+.+| |=+++....+.++++.++. +.++ |.+|-|....
T Consensus 29 C~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllV-tG~vt~~~~~~l~~~~e~~--p~pk~VIA~GsCA~~G 98 (145)
T TIGR01957 29 CAIEMMATGASRYDLDRFGSEVFRASPRQADVMIV-AGTVTKKMAPALRRLYDQM--PEPKWVISMGACANSG 98 (145)
T ss_pred HHHHHHHccCccccHHHhCCceecCCCCcceEEEE-ecCCcHHHHHHHHHHHHhc--cCCceEEEecceeecC
Confidence 7888776543 4456 556677889999999 5578766433433333322 2333 3467775443
No 191
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=81.21 E-value=8.7 Score=38.80 Aligned_cols=144 Identities=14% Similarity=0.159 Sum_probs=82.9
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (624)
..+.++.++-++.|.+.|+..|-+. +...+. .-.+.++.+.+..+ . ..+.. ..++. ....+...+.+
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~----~~~~~v~~~~~~~~--~-~~~~~-~~~~~--~~~i~~~~~~~ 76 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVG---FPFASE----DDFEQVRRLREALP--N-ARLQA-LCRAN--EEDIERAVEAA 76 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEE---HCTSSH----HHHHHHHHHHHHHH--S-SEEEE-EEESC--HHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEc---ccccCH----HHHHHhhhhhhhhc--c-cccce-eeeeh--HHHHHHHHHhh
Confidence 4788999999999999999998876 122221 22444555555443 2 22211 12222 11222212222
Q ss_pred hCCCcceeccccCCCCCH-HHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCC
Q 006956 300 RHPCVYSFLHVPVQSGSD-AVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (624)
Q Consensus 300 ~~~~v~~~l~IGlQSgsd-~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 376 (624)
...+ ...+++.+ +.|+ .....+++. ...+.+.+.++.+++. |+.+...++-.. .-+++.+.+.++.+.++++
T Consensus 77 ~~~g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~--g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 77 KEAG-IDIIRIFI-SVSDLHIRKNLNKSREEALERIEEAVKYAKEL--GYEVAFGCEDAS-RTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHTT-SSEEEEEE-ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT--TSEEEEEETTTG-GSSHHHHHHHHHHHHHHT-
T ss_pred Hhcc-CCEEEecC-cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCceEeCccccc-cccHHHHHHHHHHHHHcCC
Confidence 2222 45666654 4455 344555543 2466778888999998 888855554443 3468889999999999999
Q ss_pred CeEEE
Q 006956 377 PQVHI 381 (624)
Q Consensus 377 ~~v~i 381 (624)
+.+.+
T Consensus 152 ~~i~l 156 (237)
T PF00682_consen 152 DIIYL 156 (237)
T ss_dssp SEEEE
T ss_pred eEEEe
Confidence 87755
No 192
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=80.77 E-value=58 Score=33.73 Aligned_cols=145 Identities=15% Similarity=0.071 Sum_probs=86.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
...+.++.++-++.|.+.|+..|-+.. +..+.+ + .+.++.+.+..+ + ..+.. ++++. ...++...+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~~~~---~-~~~~~~l~~~~~--~-~~~~~-l~r~~--~~~v~~a~~~ 81 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVDVIEAGF---PAASPG---D-FEAVKRIAREVL--N-AEICG-LARAV--KKDIDAAAEA 81 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHH---H-HHHHHHHHHhCC--C-CEEEE-EccCC--HhhHHHHHHh
Confidence 467899999999999999999998753 111111 1 366777765443 2 23221 22332 1222222222
Q ss_pred HhCCCcceeccccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
.... ....+.+-+ |.|+.-+ +.+++. ...+.+.+.++.+++. |+.+....+.+. .-+++.+.+.++.+.+++
T Consensus 82 ~~~~-~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~G 156 (268)
T cd07940 82 LKPA-KVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSH--GLDVEFSAEDAT-RTDLDFLIEVVEAAIEAG 156 (268)
T ss_pred CCCC-CCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEeeecCC-CCCHHHHHHHHHHHHHcC
Confidence 1111 134555544 6666654 445654 2456788899999998 887764444432 246777788888888888
Q ss_pred CCeEEE
Q 006956 376 FPQVHI 381 (624)
Q Consensus 376 ~~~v~i 381 (624)
++.+.+
T Consensus 157 ~~~i~l 162 (268)
T cd07940 157 ATTINI 162 (268)
T ss_pred CCEEEE
Confidence 876554
No 193
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=80.51 E-value=46 Score=36.29 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=85.2
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchhHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIA 296 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~-~~p~~i~~~l~el~ 296 (624)
-...+.++.++-++.|.+.|++.|-+. +...+. .-.+.++.+.+..+ . .++.. .++. .+. +.
T Consensus 17 ~~~~s~~~k~~ia~~L~~~Gv~~IEvG---~p~~~~----~~~e~i~~i~~~~~--~---~~i~~~~r~~--~~d---i~ 79 (365)
T TIGR02660 17 GVAFTAAEKLAIARALDEAGVDELEVG---IPAMGE----EERAVIRAIVALGL--P---ARLMAWCRAR--DAD---IE 79 (365)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCH----HHHHHHHHHHHcCC--C---cEEEEEcCCC--HHH---HH
Confidence 356899999999999999999999874 233322 12467777766432 2 22222 2332 222 33
Q ss_pred HHHhCCCcceeccccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 006956 297 EVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 373 (624)
.+... + ...+++.+ +.|+.-+ ..+++. ...+.+.++++.+++. |+.+..++.-+. --+.+.+.+.++.+.+
T Consensus 80 ~a~~~-g-~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~ 153 (365)
T TIGR02660 80 AAARC-G-VDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDAS-RADPDFLVELAEVAAE 153 (365)
T ss_pred HHHcC-C-cCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCCC-CCCHHHHHHHHHHHHH
Confidence 33333 2 45666666 5666554 445543 2345566888888888 877665544432 3346777777777888
Q ss_pred cCCCeEE
Q 006956 374 YKFPQVH 380 (624)
Q Consensus 374 l~~~~v~ 380 (624)
.+.+.+.
T Consensus 154 ~Ga~~i~ 160 (365)
T TIGR02660 154 AGADRFR 160 (365)
T ss_pred cCcCEEE
Confidence 8887654
No 194
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=80.25 E-value=80 Score=32.98 Aligned_cols=143 Identities=12% Similarity=0.150 Sum_probs=85.7
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCccCCHHHHHHHHHHhCCCCC-CceEE----Eee-cCCcchhHH
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDG-STMLR----IGM-TNPPFILEH 291 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~--yg~d~~~~l~eLL~~l~~~l~~~~-~~~ir----i~~-~~p~~i~~~ 291 (624)
..+.++.++-+..|.+.|+..|-+...-.+. ++. ...+-.+.++.+.+..+... ..+.| +++ ..|..+.+.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~-~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRF-LNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccc-cCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 5788999999999999999998876422100 100 01233667777776543101 11222 111 134444433
Q ss_pred HHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHH
Q 006956 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNL 370 (624)
Q Consensus 292 l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~f 370 (624)
. +....+. + ...+++.. +.|+ .+...+.++.+++. |..+...+.+-+ +.-+++.+.+.++.
T Consensus 96 d--i~~~~~~-g-~~~iri~~-~~~~-----------~~~~~~~i~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 96 F--VEKAAKN-G-IDIFRIFD-ALND-----------VRNLEVAIKAVKKA--GKHVEGAICYTGSPVHTLEYYVKLAKE 157 (275)
T ss_pred H--HHHHHHc-C-CCEEEEee-cCCh-----------HHHHHHHHHHHHHC--CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence 2 3323332 2 34555533 2222 57888999999999 987776665422 55678888999999
Q ss_pred HHHcCCCeEEE
Q 006956 371 IKEYKFPQVHI 381 (624)
Q Consensus 371 l~el~~~~v~i 381 (624)
+.+++.+.+.+
T Consensus 158 ~~~~Ga~~i~l 168 (275)
T cd07937 158 LEDMGADSICI 168 (275)
T ss_pred HHHcCCCEEEE
Confidence 99999987765
No 195
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=79.95 E-value=94 Score=33.61 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=97.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeec-----CCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~-----d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 293 (624)
...+.+++++-++.|.+.|+..|-+.-. ....||... ..-.+.++.+.+..+ ...+.. ++.|..-. .+
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~~---~~~~~~-ll~pg~~~--~~ 92 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVVK---QAKIAA-LLLPGIGT--VD 92 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhCC---CCEEEE-EeccCccc--HH
Confidence 4578999999999999999999887511 122233321 223567788766543 233332 13342211 12
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 373 (624)
.+......+ ...+.+.. +.+ ..+...+.++.+|+. |..+...++.. +.-+++.+.+.++.+.+
T Consensus 93 dl~~a~~~g--vd~iri~~-~~~-----------e~~~~~~~i~~ak~~--G~~v~~~l~~a-~~~~~e~l~~~a~~~~~ 155 (337)
T PRK08195 93 DLKMAYDAG--VRVVRVAT-HCT-----------EADVSEQHIGLAREL--GMDTVGFLMMS-HMAPPEKLAEQAKLMES 155 (337)
T ss_pred HHHHHHHcC--CCEEEEEE-ecc-----------hHHHHHHHHHHHHHC--CCeEEEEEEec-cCCCHHHHHHHHHHHHh
Confidence 243333332 45555544 111 235678899999999 99998888877 45689999999999999
Q ss_pred cCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHH
Q 006956 374 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 411 (624)
Q Consensus 374 l~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~L~ 411 (624)
++.+.+.+- .|-- ...++...++.+.+.
T Consensus 156 ~Ga~~i~i~------DT~G----~~~P~~v~~~v~~l~ 183 (337)
T PRK08195 156 YGAQCVYVV------DSAG----ALLPEDVRDRVRALR 183 (337)
T ss_pred CCCCEEEeC------CCCC----CCCHHHHHHHHHHHH
Confidence 998876542 2211 233555556655554
No 196
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=79.02 E-value=73 Score=34.73 Aligned_cols=142 Identities=14% Similarity=0.033 Sum_probs=89.3
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
-...+.++.++-++.|.+.|++.|-+.. +..+. .-.+.++.+.+... ...+. ...++. .+. +..
T Consensus 16 ~~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~~---~~~v~-~~~r~~--~~d---i~~ 79 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDELGVDVIEAGF---PIASE----GEFEAIKKISQEGL---NAEIC-SLARAL--KKD---IDK 79 (363)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCh----HHHHHHHHHHhcCC---CcEEE-EEcccC--HHH---HHH
Confidence 3568899999999999999999998642 22222 22466667665321 12221 122321 222 333
Q ss_pred HHhCCCcceeccccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+...+ ...+++-+ +.|+.-+ +.+++. ...+.+.+.++.+++. |+.+...+.-+. --+.+.+.+.++.+.+.
T Consensus 80 a~~~g--~~~i~i~~-~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 80 AIDCG--VDSIHTFI-ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH--GLIVEFSAEDAT-RTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHcC--cCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeecC-CCCHHHHHHHHHHHHhC
Confidence 33332 45566655 3455443 455554 3467788899999999 988887776554 45688888888888999
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+.+.+.+
T Consensus 154 g~~~i~l 160 (363)
T TIGR02090 154 GADRINI 160 (363)
T ss_pred CCCEEEE
Confidence 9887655
No 197
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=78.77 E-value=20 Score=37.28 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=84.4
Q ss_pred CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006956 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (624)
Q Consensus 217 ~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 296 (624)
-...++.+.++++++.+.+.|+.-|.+-++ .-+.+....+..+++.+.+.. ...+.+.+.+|..+..- .
T Consensus 18 ~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~---~~~~eE~~r~~~~v~~l~~~~----~~plsIDT~~~~v~eaa----L 86 (261)
T PRK07535 18 AIEAKDAAFIQKLALKQAEAGADYLDVNAG---TAVEEEPETMEWLVETVQEVV----DVPLCIDSPNPAAIEAG----L 86 (261)
T ss_pred HHHcCCHHHHHHHHHHHHHCCCCEEEECCC---CCchhHHHHHHHHHHHHHHhC----CCCEEEeCCCHHHHHHH----H
Confidence 356788999999999999999997776554 222222235666777776532 34577776666432221 1
Q ss_pred HHHhCCCcceeccccCCCCCHHHHHhhc-------------CC--CC----HHHHHHHHHHHHHhCCCC---EEEEEEEE
Q 006956 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMN-------------RE--YT----LSDFRTVVDTLIELVPGM---QIATDIIC 354 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd~vLk~M~-------------R~--~t----~e~~~e~I~~lr~~~pgi---~i~td~Iv 354 (624)
+......+.+.++..-+. .++++..+. ++ .+ .+.+.+.++.+.++ |+ .+..|=.+
T Consensus 87 ~~~~G~~iINsIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~--GI~~~~IilDPgi 163 (261)
T PRK07535 87 KVAKGPPLINSVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEY--GIPPEDIYIDPLV 163 (261)
T ss_pred HhCCCCCEEEeCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHc--CCCHhHEEEeCCC
Confidence 111112233444322111 334433221 11 12 35566777778888 88 78889999
Q ss_pred cCCCCCHHHHHHHHHHHHHcC
Q 006956 355 GFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 355 GfPGETeedf~eTl~fl~el~ 375 (624)
|+.|-+.+...++++.++.++
T Consensus 164 ~~~~~~~~~~~~~l~~i~~l~ 184 (261)
T PRK07535 164 LPLSAAQDAGPEVLETIRRIK 184 (261)
T ss_pred CcccCChHHHHHHHHHHHHHH
Confidence 977777777766666665543
No 198
>PRK00915 2-isopropylmalate synthase; Validated
Probab=78.69 E-value=50 Score=37.80 Aligned_cols=147 Identities=11% Similarity=-0.003 Sum_probs=83.6
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
..+++.++-++-++.|.+.|++.|-+.. +..+.+ + .+.++++.+..+ ...+.. +.+.. .+.++...+
T Consensus 20 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~s~~---d-~~~v~~i~~~~~---~~~i~a-~~r~~--~~did~a~~ 86 (513)
T PRK00915 20 GASLTVEEKLQIAKQLERLGVDVIEAGF---PASSPG---D-FEAVKRIARTVK---NSTVCG-LARAV--KKDIDAAAE 86 (513)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcC---CCCChH---H-HHHHHHHHhhCC---CCEEEE-EccCC--HHHHHHHHH
Confidence 3578999999999999999999998742 122211 1 345566655332 222221 12221 122222333
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
.+...+ ...+++-+-+.+-.+...+++. ...+.+.+.++.++++ |..+..+..-+.. -+.+.+.+.++.+.+.+
T Consensus 87 a~~~~~-~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r-~d~~~l~~~~~~~~~~G 162 (513)
T PRK00915 87 ALKPAE-APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATR-TDLDFLCRVVEAAIDAG 162 (513)
T ss_pred HhhcCC-CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCC-CCHHHHHHHHHHHHHcC
Confidence 322322 4567766644444444555543 2445567888899998 8776544444432 23566777777778888
Q ss_pred CCeEEE
Q 006956 376 FPQVHI 381 (624)
Q Consensus 376 ~~~v~i 381 (624)
.+.+.+
T Consensus 163 a~~i~l 168 (513)
T PRK00915 163 ATTINI 168 (513)
T ss_pred CCEEEE
Confidence 876543
No 199
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=78.29 E-value=1.7 Score=42.91 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=39.7
Q ss_pred hHHHHHHH-----HHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEEccccC
Q 006956 73 SDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQ 136 (624)
Q Consensus 73 ~Dse~~~~-----~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVgGc~aq 136 (624)
-|.|.++- .|++.|+..+..+..||+++| |=+|+......+.++.++. +.+| |.+|-|..+
T Consensus 40 C~iE~~a~~~p~yD~eRfGi~~~asPR~ADvllV-tG~Vt~km~~~l~~~y~qm--PePK~VIA~GaCA~s 107 (189)
T PRK14813 40 CAIEMMATNASNYDLERFGIFPRSSPRQSDLMIV-AGTVTMKMAERVVRLYEQM--PEPRYVLSMGSCSNC 107 (189)
T ss_pred HHHHHHHhcccCCCHHHcCCeecCCcccceEEEE-eccCchhhHHHHHHHHHhC--CCCCEEEEecccccC
Confidence 45555543 456778888899999999999 5577776544554444443 2444 346778654
No 200
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=78.18 E-value=4.2 Score=40.07 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=38.2
Q ss_pred hHHHHHHHHH-----HhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCc
Q 006956 73 SDSEYMAGQL-----SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (624)
Q Consensus 73 ~Dse~~~~~L-----~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~ 137 (624)
-|.|.++... +..|...+..+.+||+.+| |=+++......+..+.++..+...-|.+|-|....
T Consensus 47 C~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV-~G~vt~~~~~~l~~~~e~mp~pk~VIA~GaCA~~G 115 (183)
T PRK06411 47 CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIV-AGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSG 115 (183)
T ss_pred hHHHHHHccCccccHHHhCccccCCCCceeEEEE-EeCCCccchHHHHHHHHHcCcCCeEEEEecccccC
Confidence 8888877553 3445556677899999999 44777664333333333322222224478786553
No 201
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=77.61 E-value=3.4 Score=39.21 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=38.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcChh-hhcCCccEEEcCC
Q 006956 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQ 153 (624)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~e-~~~~~~d~VvG~~ 153 (624)
++||+++|...|+.+.+ +.++++..+ +++.+++.|+.++..|+ +.....+.+-|..
T Consensus 61 ~~aD~viiTGsTlvN~T---i~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~ 117 (147)
T PF04016_consen 61 PWADVVIITGSTLVNGT---IDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSR 117 (147)
T ss_dssp GG-SEEEEECHHCCTTT---HHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEE
T ss_pred ccCCEEEEEeeeeecCC---HHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEE
Confidence 45899999888888865 455566655 46789999999999997 4566666555543
No 202
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=76.41 E-value=1.3e+02 Score=34.15 Aligned_cols=52 Identities=15% Similarity=-0.015 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCccCCHHHHHHHHHHhCC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~y-g~d~~~~l~eLL~~l~~~l~ 271 (624)
..+.++.+.-++.|.+.|+..|-+.|...+.. .+-..++-.+.++.+.+..+
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~ 73 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK 73 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC
Confidence 56788889889999999999988765432210 00012344677888876543
No 203
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=75.68 E-value=7.4 Score=35.03 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=36.8
Q ss_pred eEEEEecC-CccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccc---hHHHHHHHHHHHhhC-CCCEEEE
Q 006956 60 TIYMKTFG-CSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP---SQSAMDTLIAKCKSA-KKPLVVA 131 (624)
Q Consensus 60 ~v~i~TlG-C~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~---ae~~~~~~ir~~k~~-~~~VVVg 131 (624)
=+.|.|=| |+ ..+....+..|.+.| +|+|-+.||.+... .-.....+.+.+++. |.+||.|
T Consensus 40 lvgf~~CgGCp--g~~~~~~~~~l~~~~---------~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 40 LVGFFTCGGCP--GRKLVRRIKKLKKNG---------ADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred EEEEeeCCCCC--hhHHHHHHHHHHHCC---------CCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEeee
Confidence 35555545 98 556666667776544 67999999988732 111234444445445 7777765
No 204
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.09 E-value=9.6 Score=39.40 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=78.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-----cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~-----~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 292 (624)
.+..+.+.+++.++.+.+.|+.-|.+-++.+....... ..++..+++.+.+.. ...+.+.+.+|..+..-
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~~piSIDT~~~~v~~aa- 92 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----DVPISVDTFNAEVAEAA- 92 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCcHHHHHHH-
Confidence 45578999999999999999998887665432211110 024556666665421 34577776666433221
Q ss_pred HHHHHHHhC-CCcceeccccCCCCCHHHHHhhcC-----------C------------CC----HHHHHHHHHHHHHhCC
Q 006956 293 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNR-----------E------------YT----LSDFRTVVDTLIELVP 344 (624)
Q Consensus 293 ~el~~l~~~-~~v~~~l~IGlQSgsd~vLk~M~R-----------~------------~t----~e~~~e~I~~lr~~~p 344 (624)
++. ..+.+.+. .+..++++++.+.+ + .. .+.+.+.++.+.++
T Consensus 93 ------L~~g~~iINdis--~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 162 (258)
T cd00423 93 ------LKAGADIINDVS--GGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEA-- 162 (258)
T ss_pred ------HHhCCCEEEeCC--CCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHc--
Confidence 111 11222222 22222444332211 0 01 35667777778888
Q ss_pred CC---EEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 345 GM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 345 gi---~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
|+ .+..|-.+||+. +.++...+++.+..+
T Consensus 163 Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~ 194 (258)
T cd00423 163 GIPPEDIILDPGIGFGK-TEEHNLELLRRLDAF 194 (258)
T ss_pred CCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHH
Confidence 85 578899999887 555554555555544
No 205
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=74.51 E-value=7.3 Score=40.20 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=44.8
Q ss_pred ceEEEEecCCccChhHHHHHHHHH-----HhcCce-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEE
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVV 130 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L-----~~~G~~-~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVV 130 (624)
..+++.++|| +--|.|.++... ++.|+. .+..+..||+.+| |=+|+......+.++.++. ..++ |.+
T Consensus 31 ~Slw~~~~gt--~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLV-tG~VT~km~~~L~rlyeqm--P~PK~VIAv 105 (264)
T PRK14819 31 SSVWPMAFGL--ACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIV-AGTVTKKMAPQVVRLYNQM--PEPRYVISM 105 (264)
T ss_pred CCcceeeeCC--cccHHHHHHhccccccHHHhCcccccCCCCcceEEEE-ecCCchhhHHHHHHHHHhc--cCCCeEEEE
Confidence 3467777775 337888877653 344553 4577889999999 5577766444444433332 2344 337
Q ss_pred EccccCc
Q 006956 131 AGCVPQG 137 (624)
Q Consensus 131 gGc~aq~ 137 (624)
|-|....
T Consensus 106 GaCA~~G 112 (264)
T PRK14819 106 GACATSG 112 (264)
T ss_pred ccccccC
Confidence 7785543
No 206
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=74.10 E-value=1.2e+02 Score=31.68 Aligned_cols=148 Identities=17% Similarity=0.072 Sum_probs=83.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchh-HHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIAE 297 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~-~~l~el~~ 297 (624)
...+.++.++-++.|.+.|++.|-+... + ... .-.+.++.+.+... ......-+....+..+. .....+..
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~--~-~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWP--G-SNP----KDTEFFARAKKLKL-KHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCC--c-CCH----HHHHHHHHHHHcCC-CCcEEEEEecccccCCCccchHHHHH
Confidence 5678999999999999999999987421 1 111 12444566544210 01111111111122121 11112333
Q ss_pred HHhCCCcceeccccCCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC--CCHHHHHHHHHHH
Q 006956 298 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGF-PG--ETDEDFNQTVNLI 371 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~-vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PG--ETeedf~eTl~fl 371 (624)
+... + ...+++.+ |.|+. ..+.+++. ...+.+.+.++.+++. |+.+..+.+ .| .+ -+.+.+.+.++.+
T Consensus 87 a~~~-g-~~~i~i~~-~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~~-~~~d~~~~~~~~~~~~~~~~ 160 (273)
T cd07941 87 LLEA-G-TPVVTIFG-KSWDLHVTEALGTTLEENLAMIRDSVAYLKSH--GREVIFDAE-HFFDGYKANPEYALATLKAA 160 (273)
T ss_pred HHhC-C-CCEEEEEE-cCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEeEE-eccccCCCCHHHHHHHHHHH
Confidence 3332 2 45566644 34443 44666665 4667888899999999 988777533 33 22 3466667777777
Q ss_pred HHcCCCeEE
Q 006956 372 KEYKFPQVH 380 (624)
Q Consensus 372 ~el~~~~v~ 380 (624)
.+.+.+.+.
T Consensus 161 ~~~g~~~i~ 169 (273)
T cd07941 161 AEAGADWLV 169 (273)
T ss_pred HhCCCCEEE
Confidence 888887654
No 207
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=73.37 E-value=5.7 Score=40.18 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=40.7
Q ss_pred hHHHHHHHH-----HHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEEccccCc
Q 006956 73 SDSEYMAGQ-----LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQG 137 (624)
Q Consensus 73 ~Dse~~~~~-----L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVgGc~aq~ 137 (624)
-|.|.++.. |++.|+..+..+..||+++| |=+|+......+.++.+.. +.+| |.+|-|....
T Consensus 44 C~iE~~a~~~p~yDleRfGi~~~aSPRhADvliV-tG~VT~km~~~L~rlyeqm--PePK~VIA~GaCA~sG 112 (225)
T CHL00023 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT-AGTVTMKMAPSLVRLYEQM--PEPKYVIAMGACTITG 112 (225)
T ss_pred HHHHHHHhCCCccCHHHcCCeecCCcccceEEEE-ecCCccccHHHHHHHHHhc--CCCCeEEEEccccccC
Confidence 788877642 46678888899999999999 6688876544444443333 2344 3467775543
No 208
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=73.29 E-value=60 Score=34.12 Aligned_cols=147 Identities=10% Similarity=0.095 Sum_probs=87.4
Q ss_pred cccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCC-CceEEEeecCCcchhHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~-~~~iri~~~~p~~i~~~l~el 295 (624)
-...+.++-++-++.|.+ .|+++|-+.. +....+ -.+.++++.+.-...+ ...+++...-+. ... +
T Consensus 13 ~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s~~----e~~av~~~~~~~~~~~~~~~~~~~a~~~~--~~~---~ 80 (280)
T cd07945 13 GVSFSPSEKLNIAKILLQELKVDRIEVAS---ARVSEG----EFEAVQKIIDWAAEEGLLDRIEVLGFVDG--DKS---V 80 (280)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCEEEecC---CCCCHH----HHHHHHHHHHHhhhhccccCcEEEEecCc--HHH---H
Confidence 456889999999999754 5999998753 222221 1255555543210000 012233322232 122 3
Q ss_pred HHHHhCCCcceeccccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE-cCC-CCCHHHHHHHHHH
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC-GFP-GETDEDFNQTVNL 370 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~Iv-GfP-GETeedf~eTl~f 370 (624)
...... + ...+++.+ |.|+... +.+|+. ...+++.+.++.+++. |+.+..++.- |-| .-+++.+.+.++.
T Consensus 81 ~~A~~~-g-~~~i~i~~-~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~--G~~v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 81 DWIKSA-G-AKVLNLLT-KGSLKHCTEQLRKTPEEHFADIREVIEYAIKN--GIEVNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHC-C-CCEEEEEE-eCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC--CCEEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 333322 2 57788877 5555544 555654 3556778888888988 8888877764 223 3467888888888
Q ss_pred HHHcCCCeEEE
Q 006956 371 IKEYKFPQVHI 381 (624)
Q Consensus 371 l~el~~~~v~i 381 (624)
+.+++.+.+.+
T Consensus 156 ~~~~G~~~i~l 166 (280)
T cd07945 156 LSDLPIKRIML 166 (280)
T ss_pred HHHcCCCEEEe
Confidence 99999887654
No 209
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=72.77 E-value=80 Score=33.51 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=33.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~ 268 (624)
|.++..++...+..+.+.|+++|..+..|...-+......-.+|++.+..
T Consensus 92 r~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~ 141 (296)
T PRK09432 92 IDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKS 141 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 34578889999999999999999888777554332211223466665554
No 210
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=72.36 E-value=8.3 Score=37.93 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=42.0
Q ss_pred eEEEEecCCccChhHHHHHHHH-----HHhcCceee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~-----L~~~G~~~~-~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVg 131 (624)
.+++.++||.= -|.|.++-. +++.|+..+ ..+..||+++| |=+|+.+..+.+.++.+. .+.++ |.+|
T Consensus 34 Slw~~~~~~sC--C~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillV-tG~VT~~m~~~l~r~ye~--~p~pK~VIAvG 108 (183)
T PRK14815 34 SLWPMPMGLAC--CAIELMAVACSRFDISRFGAEVMRFSPRQADVMIV-AGTVTYKMALAVRRIYDQ--MPEPKWVIAMG 108 (183)
T ss_pred CccceeEccch--HHHHHHHhcCccccHHHhCcccCCCCCccccEEEE-eCcCchhhHHHHHHHHHh--CCCCCEEEEec
Confidence 35555555432 777776532 345565554 77899999999 557776544343333222 23444 3367
Q ss_pred ccccCc
Q 006956 132 GCVPQG 137 (624)
Q Consensus 132 Gc~aq~ 137 (624)
.|....
T Consensus 109 sCA~~G 114 (183)
T PRK14815 109 ACASSG 114 (183)
T ss_pred cccccC
Confidence 785543
No 211
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=69.02 E-value=1e+02 Score=35.09 Aligned_cols=146 Identities=11% Similarity=-0.048 Sum_probs=80.2
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEE-EeecCCcchhHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEHLKEIA 296 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~ir-i~~~~p~~i~~~l~el~ 296 (624)
-.+++.++-++-++.|.+.|++.|-.. ++..+. .+ .+.++.+.+..+ . ..+. +...+...+ +...
T Consensus 17 g~~~s~e~K~~ia~~L~~~GV~~IEvG---~p~~s~---~d-~e~v~~i~~~~~--~-~~i~al~r~~~~di----d~a~ 82 (494)
T TIGR00973 17 GASLTVEEKLQIALALERLGVDIIEAG---FPVSSP---GD-FEAVQRIARTVK--N-PRVCGLARCVEKDI----DAAA 82 (494)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEE---CCCCCH---HH-HHHHHHHHHhCC--C-CEEEEEcCCCHHhH----HHHH
Confidence 457899999999999999999998753 222221 12 345566655432 1 2222 221223222 2222
Q ss_pred HHHhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+.+...+ ...+|+-+=+.+-.+...+++. ...+.+.+.++.+++. |..+..+..-+... +.+.+.+.++.+.+.
T Consensus 83 ~al~~~~-~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~Ed~~r~-d~~~l~~~~~~~~~~ 158 (494)
T TIGR00973 83 EALKPAE-KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSCEDAGRT-EIPFLARIVEAAINA 158 (494)
T ss_pred HhccccC-CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCC-CHHHHHHHHHHHHHc
Confidence 2222222 3556665544444444555543 3345566788888888 76554444433322 355666677777777
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+.+.+.+
T Consensus 159 Ga~~i~l 165 (494)
T TIGR00973 159 GATTINI 165 (494)
T ss_pred CCCEEEe
Confidence 8776543
No 212
>PRK09389 (R)-citramalate synthase; Provisional
Probab=67.97 E-value=1.7e+02 Score=33.45 Aligned_cols=142 Identities=13% Similarity=0.004 Sum_probs=86.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
-.+++.++.++-++.|.+.|++.|-... +..+.+ =.+.++.+.+.- ....+.. +.+.. .+. +..
T Consensus 18 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~~~~----d~e~v~~i~~~~---~~~~i~a-~~r~~--~~d---i~~ 81 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDELGVDVIEAGS---AITSEG----EREAIKAVTDEG---LNAEICS-FARAV--KVD---IDA 81 (488)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeC---CcCCHH----HHHHHHHHHhcC---CCcEEEe-ecccC--HHH---HHH
Confidence 4678999999999999999999998753 222221 145667776532 1122211 12221 222 333
Q ss_pred HHhCCCcceeccccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+... + ...+|+.+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+..+..-+. --+.+-+.+.++.+.+.
T Consensus 82 a~~~-g-~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 82 ALEC-D-VDSVHLVV-PTSDLHIEYKLKKTREEVLETAVEAVEYAKDH--GLIVELSGEDAS-RADLDFLKELYKAGIEA 155 (488)
T ss_pred HHhC-C-cCEEEEEE-ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEeeCC-CCCHHHHHHHHHHHHhC
Confidence 3332 2 46777777 5555544 444443 3455677777888888 888877777653 34567777888888898
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+.+.+.+
T Consensus 156 Ga~~i~l 162 (488)
T PRK09389 156 GADRICF 162 (488)
T ss_pred CCCEEEE
Confidence 8887554
No 213
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=67.10 E-value=1.4e+02 Score=34.33 Aligned_cols=150 Identities=16% Similarity=0.018 Sum_probs=82.1
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh-CCCCCCceEEEeecCCcchhH-HHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILE-HLKEI 295 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~-l~~~~~~~iri~~~~p~~i~~-~l~el 295 (624)
-.+.+.++.++-++.|.+.|+++|-..- +....+ -.+.++.+.+. +. ......+.......+.. ....+
T Consensus 21 g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~---p~as~~----d~~~~~~i~~~~l~--~~~i~~~~~~~~~~i~~~~d~~~ 91 (524)
T PRK12344 21 GISFSVEDKLRIARKLDELGVDYIEGGW---PGSNPK----DTEFFKRAKELKLK--HAKLAAFGSTRRAGVSAEEDPNL 91 (524)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcC---CcCChh----HHHHHHHHHHhCCC--CcEEEEEeeccccCCCcccHHHH
Confidence 3678999999999999999999998732 111111 14556666542 11 11222222222222210 01112
Q ss_pred HHHHhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--CCCHHHHHHHHHHH
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLI 371 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfP--GETeedf~eTl~fl 371 (624)
..+... + ...+|+.+-+.+-...+.+++. ...+.+.+.++.++++ |..+..+.+.-+. -.+.+-+.+.++.+
T Consensus 92 e~~~~~-g-~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 92 QALLDA-G-TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH--GREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred HHHHhC-C-CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEccccccccccCCHHHHHHHHHHH
Confidence 333332 2 4667776644443344555543 4567777888899998 8766543331111 13345556667777
Q ss_pred HHcCCCeEE
Q 006956 372 KEYKFPQVH 380 (624)
Q Consensus 372 ~el~~~~v~ 380 (624)
.+.+.+.+.
T Consensus 168 ~~~Gad~i~ 176 (524)
T PRK12344 168 AEAGADWVV 176 (524)
T ss_pred HhCCCCeEE
Confidence 788888765
No 214
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=66.99 E-value=1.2e+02 Score=32.02 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=73.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH---HHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE---HLK 293 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~---~l~ 293 (624)
+-++..+|.+.++.+.+.|+++|.++..|....+...+ .+-.+|++.++.... +...+... .+|..-.+ ...
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~--~~f~i~~A-~~Pe~h~~s~~~~~ 163 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRG--GIFDIGVA-AYPEGHPESKDVKE 163 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcC--CeEEEEEE-eCCCCCccchhhHH
Confidence 34588999999999999999999988888752111111 355788888875432 22444443 56654322 111
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf 356 (624)
++..+.+. +++|-+.++.++ -++.+.+.+..++++.+ |+ ..-|+.|+
T Consensus 164 d~~~lkrK----------v~aGAd~~iTQ~--~fd~e~~~~~~~~~~~~--g~--~~pI~~Gi 210 (291)
T COG0685 164 DIKRLKRK----------VDAGADFFITQF--FFDVEAFERFAERVRAA--GI--DIPIIPGI 210 (291)
T ss_pred HHHHHHHH----------HhcchHHHHHHH--ccCHHHHHHHHHHHHhc--CC--CCCeeecc
Confidence 22222211 336667776665 57889999999999998 65 33445544
No 215
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=66.51 E-value=1.6e+02 Score=30.30 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=85.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeec-----CCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~-----d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 293 (624)
...+.++.++-++.|.+.|+..|-+... ..+.++.. ..+-.+.++.+.+..+ ...+... ..+..... +
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~---~~~~~~~-~~~~~~~~--~ 89 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALK---QAKLGVL-LLPGIGTV--D 89 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhcc---CCEEEEE-ecCCccCH--H
Confidence 4678999999999999999998877621 11111111 1233567777766443 2333322 22211111 2
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 373 (624)
.+......+ ...+.+.+ +.|+ ...+.+.++.+++. |+.+...++-... -+++.+.+.++.+.+
T Consensus 90 ~i~~a~~~g--~~~iri~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (263)
T cd07943 90 DLKMAADLG--VDVVRVAT-HCTE-----------ADVSEQHIGAARKL--GMDVVGFLMMSHM-ASPEELAEQAKLMES 152 (263)
T ss_pred HHHHHHHcC--CCEEEEEe-chhh-----------HHHHHHHHHHHHHC--CCeEEEEEEeccC-CCHHHHHHHHHHHHH
Confidence 233333332 45555543 3332 23678899999999 9988888876653 578889999999999
Q ss_pred cCCCeEEE
Q 006956 374 YKFPQVHI 381 (624)
Q Consensus 374 l~~~~v~i 381 (624)
.+.+.+.+
T Consensus 153 ~G~d~i~l 160 (263)
T cd07943 153 YGADCVYV 160 (263)
T ss_pred cCCCEEEE
Confidence 99887643
No 216
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=66.28 E-value=1.2e+02 Score=31.41 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=39.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---cC---CHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GV---NLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~---~~---~l~eLL~~l~~~l~~~~~~~iri~~~~p~ 286 (624)
+..+.+++++.+.++.+.|+.-|-+.+..+.. |.+. .. ++..+++.+.+.. ...+.+.+.+|.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p-~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSIDT~~~~ 87 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRP-GADPVSVEEELERVIPVLEALRGEL----DVLISVDTFRAE 87 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEEeCCCHH
Confidence 44689999999999999999988876543322 2111 11 3444555555431 345677766664
No 217
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=66.02 E-value=2.5e+02 Score=32.90 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCccCCHHHHHHHHHHhCC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~--yg~d~~~~l~eLL~~l~~~l~ 271 (624)
....++.+.-++.+.+.|+..|-..|.-++. |.. .+.+-.+.|+.+.+..+
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~-~~e~p~e~lr~l~~~~~ 75 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRF-LGEDPWERLRELKKAMP 75 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccc-cCCCHHHHHHHHHHhCC
Confidence 4567888888888888899998886542222 110 12344677778777654
No 218
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=65.76 E-value=1.1e+02 Score=31.69 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=40.8
Q ss_pred CCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-cc-----CCHHHHHHHHHHhCCCCCCceEEEeecCCcc
Q 006956 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-IG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (624)
Q Consensus 216 G~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d-~~-----~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~ 287 (624)
...+..+++++++.++.+.+.|+.-|.+.+..+.. +.+ .. .++..+++.+.+.. ...+.+.+.+|..
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p-~~~~i~~~~E~~rl~~~v~~~~~~~----~~plsiDT~~~~v 87 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRP-GADRVSPEEELNRVVPVIKALRDQP----DVPISVDTYRAEV 87 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCCHHH
Confidence 33455688999999999999999988885433221 111 10 12445555554421 3567777666643
No 219
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=65.59 E-value=11 Score=47.21 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccccC
Q 006956 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQ 136 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~aq 136 (624)
--.+.-.|+..||++++. ..+||+|.+ |+..+.. ...+.+.++.+++.+ .+|+|||-..+
T Consensus 749 KnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgL-S~Lmt~t-~~~m~~vi~~L~~~g~~v~v~vGGa~~s 824 (1178)
T TIGR02082 749 KNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGL-SGLITPS-LDEMKEVAEEMNRRGITIPLLIGGAATS 824 (1178)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCccccc-HHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 356677889999999765 467999999 6555544 356888889888876 57999995443
No 220
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=65.18 E-value=9 Score=35.90 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=36.5
Q ss_pred CCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE--EEcccc
Q 006956 67 GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV--VAGCVP 135 (624)
Q Consensus 67 GC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV--VgGc~a 135 (624)
.|---+||.| +.|..++.++..||++++ |=.||....+.+..+.++. +.+|+| +|-|.-
T Consensus 28 a~~sP~YDaE-------rfgI~~v~sPRhADiLlV-TG~vT~~~~e~lkk~Yea~--PePKiViA~GaCa~ 88 (148)
T COG3260 28 AALSPRYDAE-------RFGIKVVNSPRHADILLV-TGAVTRQMREPLKKAYEAM--PEPKIVIAVGACAL 88 (148)
T ss_pred eccCcccchH-------HheeEEeCCCccccEEEE-eccccHHHHHHHHHHHHhC--CCCcEEEEEccccc
Confidence 4444456654 468889999999999999 5567765444443333332 345544 566643
No 221
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=64.99 E-value=2.6e+02 Score=32.69 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCccCCHHHHHHHHHHhCC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg-~d~~~~l~eLL~~l~~~l~ 271 (624)
..+.++.++-++.|.+.|+..|-+.|.-.+.-. +-...+-.+.|+.+.+..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~ 69 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALP 69 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCC
Confidence 567888888888888899999888754322210 0012344677777766443
No 222
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=64.37 E-value=11 Score=37.20 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=31.8
Q ss_pred HHhcCce-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCc
Q 006956 82 LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (624)
Q Consensus 82 L~~~G~~-~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~ 137 (624)
+++.|.. .+..+..||+++| |=+|+....+.+.++.++..+...-|.+|-|....
T Consensus 59 ~eRfGi~~~~~sPR~ADvllV-tG~VT~~m~~~l~~~yeqmp~pk~VIAvGsCA~~G 114 (186)
T PRK14814 59 IARFGAERPSFSPRQADMILV-LGTITYKMAPVLRQIYDQMAEPKFVISVGACASSG 114 (186)
T ss_pred HHHhCccccCCCcccceEEEE-eccCchhhHHHHHHHHHhcCCCCeEEEeccccccC
Confidence 3445653 3677899999999 55788764444444333322222224477786543
No 223
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=63.85 E-value=1.9e+02 Score=30.51 Aligned_cols=139 Identities=16% Similarity=0.187 Sum_probs=77.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---cCC---HHHHHHHHHHhCCCCCCceEEEeecCCcchhHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~---~~~---l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~ 291 (624)
-+..+++.++++++.+.+.|+.-|.+.|+.+.. |.+. ... +..+++.+.+.. ...+.+.+.+|..+..
T Consensus 32 g~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-g~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISIDT~~~~va~~- 105 (282)
T PRK11613 32 GTHNSLIDAVKHANLMINAGATIIDVGGESTRP-GAAEVSVEEELDRVIPVVEAIAQRF----EVWISVDTSKPEVIRE- 105 (282)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEECCCHHHHHH-
Confidence 344689999999999999999988877654422 2221 112 344555554322 3456777555542221
Q ss_pred HHHHHHHHhC-CCcceeccccCCCCCHHHHHhhcC-----------C--CC--------------HHHHHHHHHHHHHhC
Q 006956 292 LKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNR-----------E--YT--------------LSDFRTVVDTLIELV 343 (624)
Q Consensus 292 l~el~~l~~~-~~v~~~l~IGlQSgsd~vLk~M~R-----------~--~t--------------~e~~~e~I~~lr~~~ 343 (624)
.++. ..+.+-+. |+. +++.++.+.+ + .+ .+.+.+.++.+.+.
T Consensus 106 ------AL~~GadiINDI~-g~~--d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~- 175 (282)
T PRK11613 106 ------SAKAGAHIINDIR-SLS--EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAA- 175 (282)
T ss_pred ------HHHcCCCEEEECC-CCC--CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHc-
Confidence 1211 12233332 332 3343332211 0 01 13556777778888
Q ss_pred CCC---EEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 344 PGM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 344 pgi---~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
|+ .+-.|=-+|| +.|.++=.+.++-+.++
T Consensus 176 -GI~~~~IilDPGiGF-~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 176 -GIAKEKLLLDPGFGF-GKNLSHNYQLLARLAEF 207 (282)
T ss_pred -CCChhhEEEeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 87 6888888898 66666555555555444
No 224
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=63.24 E-value=1.1e+02 Score=31.49 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEe-ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 222 TVESLVGRVRTVIADGVKEVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
++++..++++.+.+.|++.+-+= |.+ . ..-.+.++++.+.++ ....+++. .|...-.+...++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~-------~-~~d~~~v~~vr~~~g--~~~~l~vD-an~~~~~~~a~~~~~~l~ 153 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRD-------P-ARDVAVVAALREAVG--DDAELRVD-ANRGWTPKQAIRALRALE 153 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC-------H-HHHHHHHHHHHHhcC--CCCEEEEe-CCCCcCHHHHHHHHHHHH
Confidence 57889999999999999988762 211 0 122577888887765 45677777 343222233333444444
Q ss_pred CCCcceeccccCCCCCHHHHHhhcCC
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMNRE 326 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~R~ 326 (624)
..+ ..++.-|+...+.+.++.+.+.
T Consensus 154 ~~~-i~~iEeP~~~~d~~~~~~l~~~ 178 (265)
T cd03315 154 DLG-LDYVEQPLPADDLEGRAALARA 178 (265)
T ss_pred hcC-CCEEECCCCcccHHHHHHHHhh
Confidence 433 5788888877666666655543
No 225
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=61.87 E-value=74 Score=33.22 Aligned_cols=151 Identities=15% Similarity=0.227 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcch-------hHHHHH
Q 006956 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-------LEHLKE 294 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i-------~~~l~e 294 (624)
.++.+.+-+..|.+.|+++|++..-++.. |. .+.+|.+.+.+... ....+.++ .|-.. .++.+.
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiip-G~----Ey~~l~~~v~~~~~--~F~~i~~g--~PLL~~~g~~~~~~D~~~ 126 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIP-GE----EYEKLRATVEAYKH--DFKKIVLG--RPLLYTMGQENSPEDYEA 126 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCS-SH----HHHHHHHHHHHHCC--CSSEEEEE----SCSS-----SHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeC-cH----hHHHHHHHHHHhhc--cCCeEEec--ccccccccccCChHHHHH
Confidence 34555666677789999999998755432 33 35666666644221 33466665 44322 334444
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 372 (624)
+.+.+... ++-.. .++.+=.|+-| +........++..-+..+.-.+....+=|+|+ +++.+..++
T Consensus 127 va~aL~~~-------~~~~~-~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~-----~~~vi~~L~ 193 (262)
T PF06180_consen 127 VAEALAEE-------FPKKR-KDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPS-----LEDVIARLK 193 (262)
T ss_dssp HHHHHHCC-------S-TT--TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSB-----HHHHHHHHH
T ss_pred HHHHHHHh-------ccccC-CCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCC-----HHHHHHHHH
Confidence 55544321 11111 33334455554 22333334444433332223344455557774 788889999
Q ss_pred HcCCCeEEEEEeeeCCCCcccc
Q 006956 373 EYKFPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 373 el~~~~v~i~~ysP~PGTpa~~ 394 (624)
+.++..+.+.||+-..|.-+.+
T Consensus 194 ~~g~k~V~L~PlMlVAGdHa~n 215 (262)
T PF06180_consen 194 KKGIKKVHLIPLMLVAGDHAKN 215 (262)
T ss_dssp HHT-SEEEEEEESSS--HHHHC
T ss_pred hcCCCeEEEEecccccchhhhh
Confidence 9999999999999999988764
No 226
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=59.75 E-value=23 Score=34.92 Aligned_cols=66 Identities=20% Similarity=0.367 Sum_probs=38.6
Q ss_pred ecCCccChhHHHHHHHHH-----HhcCce-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEEccccC
Q 006956 65 TFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQ 136 (624)
Q Consensus 65 TlGC~~N~~Dse~~~~~L-----~~~G~~-~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVgGc~aq 136 (624)
+.|| -|.|.++... +..|.. .+..+..||+++| +=+|+......+.. +++.. .+++ |.+|.|...
T Consensus 41 ~~sC----C~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillV-eG~VT~~m~~~l~~-~~e~~-p~pk~VIAvGaCA~~ 113 (180)
T PRK14820 41 ATSC----CGIEFMATMASHYDLARFGSERPSFSPRQADMLMV-MGTIAKKMAPVLKQ-VYLQM-AEPRWVVAVGACASS 113 (180)
T ss_pred cccH----HHHHHHHhcCccccHHHhCccccCCCCccceEEEE-EecCCcccHHHHHH-HHHhc-CCCCeEEEEeccccc
Confidence 4477 8888877653 334543 3567899999999 55777654333222 22221 2333 447878654
Q ss_pred c
Q 006956 137 G 137 (624)
Q Consensus 137 ~ 137 (624)
.
T Consensus 114 G 114 (180)
T PRK14820 114 G 114 (180)
T ss_pred C
Confidence 3
No 227
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=59.63 E-value=3.1e+02 Score=32.09 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-CccCCHHHHHHHHHHhCC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELP 271 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~-d~~~~l~eLL~~l~~~l~ 271 (624)
..+.++.+.-+..|.+.|+..|-+.|...+.... -..++..+.|+.+.+..+
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~ 74 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALP 74 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCC
Confidence 4677888888888888898888876543221100 011344566666665443
No 228
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=59.40 E-value=2.3e+02 Score=29.69 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006956 320 LSAMNREYTLSDFRTVVDTLIELVPG 345 (624)
Q Consensus 320 Lk~M~R~~t~e~~~e~I~~lr~~~pg 345 (624)
+++++.+++.++..+.++.+|+..++
T Consensus 69 ~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 69 LRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 67788889999999999999976444
No 229
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.23 E-value=17 Score=36.58 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=19.3
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN 92 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~ 92 (624)
.+++.+.|- .-..=++.+.+.|++.||++++.
T Consensus 118 a~ri~vlTP---Y~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 118 AQRISVLTP---YIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred cceEEEecc---chhhhhhHHHHHHHhCCeEEEEe
Confidence 355555542 11223456677788999998764
No 230
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=58.61 E-value=18 Score=45.66 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccccC
Q 006956 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQ 136 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VVVgGc~aq 136 (624)
--.+.-.|+..||++++. ..+||+|.+ |+..+.. ...+...++.+++.+ .+|+|||-..+
T Consensus 768 kniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgL-S~L~t~s-~~~m~~~i~~L~~~g~~v~v~vGGa~~s 843 (1229)
T PRK09490 768 KNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGL-SGLITPS-LDEMVHVAKEMERQGFTIPLLIGGATTS 843 (1229)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCcchhh-HHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 345677889999999765 467999999 6565544 457788888888776 57999995444
No 231
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=58.56 E-value=2.2e+02 Score=32.70 Aligned_cols=150 Identities=11% Similarity=-0.004 Sum_probs=79.7
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCC----ceEEEeecCCcchhHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLK 293 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~----~~iri~~~~p~~i~~~l~ 293 (624)
-...+.++-++-++.|.+.|++.|-... ...+. ...+.++++.+....... ....+...... ..+.++
T Consensus 100 gv~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s~----~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~-~~~dId 171 (503)
T PLN03228 100 GGSLTPPQKLEIARQLAKLRVDIMEVGF---PGSSE----EEFEAVKTIAKTVGNEVDEETGYVPVICGIARC-KKRDIE 171 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHhcccccccccccceEEeeeccc-CHhhHH
Confidence 4678999999999999999999988642 22222 224446666543210000 01122211111 111222
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH---HHHHH
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED---FNQTV 368 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed---f~eTl 368 (624)
...+.....+ ...+++-+=+.+-.+...+++. ...+.+.+.++.++++ |.. .+.+|.+..+..| +.+.+
T Consensus 172 ~a~~a~~~a~-~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~--G~~---~v~f~~EDa~Rtd~efl~~~~ 245 (503)
T PLN03228 172 AAWEALKYAK-RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL--GFH---DIQFGCEDGGRSDKEFLCKIL 245 (503)
T ss_pred HHHHhhcccC-CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEeccccccccCHHHHHHHH
Confidence 2222222212 3456654433333334555553 3456677888888888 753 3567776655433 35555
Q ss_pred HHHHHcCCCeEEE
Q 006956 369 NLIKEYKFPQVHI 381 (624)
Q Consensus 369 ~fl~el~~~~v~i 381 (624)
+.+.+.+.+.+.+
T Consensus 246 ~~a~~~Gad~I~l 258 (503)
T PLN03228 246 GEAIKAGATSVGI 258 (503)
T ss_pred HHHHhcCCCEEEE
Confidence 6666777776543
No 232
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=57.81 E-value=1.9e+02 Score=31.42 Aligned_cols=139 Identities=20% Similarity=0.284 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC--------------CCccCCHHHHHHHHHHhCCCCCCceEEEeecCC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG--------------RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg--------------~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p 285 (624)
..+++.-+++|++|.+.|..-+.+.-.|.-+-. .|...+..--+.++.. +...+|+ ||
T Consensus 30 T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~-----g~dkiRI---NP 101 (346)
T TIGR00612 30 TIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAK-----GVAKVRI---NP 101 (346)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHh-----ccCeEEE---CC
Confidence 568999999999999999887776543321100 0101111222223322 3445564 56
Q ss_pred cch--hHHHHHHHHHHhCCCcceeccccCCCCCH--HHHHhhcCCCCH----HHHHHHHHHHHHhCCCCEEEEEEEEcCC
Q 006956 286 PFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSD--AVLSAMNREYTL----SDFRTVVDTLIELVPGMQIATDIICGFP 357 (624)
Q Consensus 286 ~~i--~~~l~el~~l~~~~~v~~~l~IGlQSgsd--~vLk~M~R~~t~----e~~~e~I~~lr~~~pgi~i~td~IvGfP 357 (624)
-.+ .+.+.++.+.++..++ -+-||+-|||= ++++..+. -+. +..++-++.+.+. |+. |+++-+-
T Consensus 102 GNig~~e~v~~vv~~ak~~~i--pIRIGVN~GSL~~~~~~kyg~-~t~eamveSAl~~v~~le~~--~F~---diviS~K 173 (346)
T TIGR00612 102 GNIGFRERVRDVVEKARDHGK--AMRIGVNHGSLERRLLEKYGD-ATAEAMVQSALEEAAILEKL--GFR---NVVLSMK 173 (346)
T ss_pred CCCCCHHHHHHHHHHHHHCCC--CEEEecCCCCCcHHHHHHcCC-CCHHHHHHHHHHHHHHHHHC--CCC---cEEEEEE
Confidence 555 3455666666666553 57788888864 34443322 133 4455566666666 554 7777776
Q ss_pred CCCHHHHHHHHHHHHHc
Q 006956 358 GETDEDFNQTVNLIKEY 374 (624)
Q Consensus 358 GETeedf~eTl~fl~el 374 (624)
.-+.....+..+++.+.
T Consensus 174 sSdv~~~i~ayr~la~~ 190 (346)
T TIGR00612 174 ASDVAETVAAYRLLAER 190 (346)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 66666666666665543
No 233
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=57.58 E-value=41 Score=34.60 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=52.6
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCCC-----CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEc
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS-----EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~-----~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgG 132 (624)
.++|.+.|- ....=.+.+...|++.||+++... ++.++.-+ ..+.+++.++++...++.-|+--
T Consensus 120 ~~RIalvTP---Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i--------~p~~i~~~~~~~~~~~aDAifis 188 (239)
T TIGR02990 120 VRRISLLTP---YTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARI--------SPDCIVEAALAAFDPDADALFLS 188 (239)
T ss_pred CCEEEEECC---CcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeec--------CHHHHHHHHHHhcCCCCCEEEEe
Confidence 467777764 667778889999999999987641 11221111 23456666666655566555445
Q ss_pred cccCcChh-hhcCC---ccEEEcCCchhHHHHHHH
Q 006956 133 CVPQGSRD-LKELE---GVSIVGVQQIDRVVEVVE 163 (624)
Q Consensus 133 c~aq~~~e-~~~~~---~d~VvG~~~~~~l~ell~ 163 (624)
|-.-.--+ +..++ +.-|+...+ -.++..+.
T Consensus 189 CTnLrt~~vi~~lE~~lGkPVlsSNq-at~W~~Lr 222 (239)
T TIGR02990 189 CTALRAATCAQRIEQAIGKPVVTSNQ-ATAWRCLR 222 (239)
T ss_pred CCCchhHHHHHHHHHHHCCCEEEHHH-HHHHHHHH
Confidence 75544322 22222 223555444 34555554
No 234
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=57.23 E-value=2.2e+02 Score=31.99 Aligned_cols=155 Identities=13% Similarity=0.174 Sum_probs=97.2
Q ss_pred cccCccC-CCcccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecC
Q 006956 209 CKTKHAR-GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284 (624)
Q Consensus 209 C~ip~~r-G~~Rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~ 284 (624)
|-.+.-. |...--+.++|-+-++.|..+ +...|.|+|...+. ..+|.++++...+. +...+.+. +|
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv-----r~DL~eiv~~a~e~----g~~hVqin-Tn 147 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL-----RDDLIEIIKIAREE----GYDHVQLN-TN 147 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccc-----hhhHHHHHHHHhhc----CccEEEEc-cC
Confidence 5443322 333345578887777777765 55788898865443 24678888887653 44455554 44
Q ss_pred CcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC---CEEEEEEEEcCCCCCH
Q 006956 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG---MQIATDIICGFPGETD 361 (624)
Q Consensus 285 p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg---i~i~td~IvGfPGETe 361 (624)
.-.+... .++.+.+++++ .+.+.+.+.-.+++.+..+ .-++..+++.+++. | +.+...++=|. .+
T Consensus 148 GirlA~~-~~~~~~l~~ag-~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~--g~~svVLVptl~rgv---Nd 215 (475)
T COG1964 148 GIRLAFD-PEYVKKLREAG-VNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKA--GLPSVVLVPTLIRGV---ND 215 (475)
T ss_pred ceeeccC-HHHHHHHHhcC-CcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhc--CCCcEEEEeehhccc---Ch
Confidence 4333322 23445555555 6889998988888886665 34555589999998 5 45556666554 67
Q ss_pred HHHHHHHHHHHHc-C-CCeEEEEEee
Q 006956 362 EDFNQTVNLIKEY-K-FPQVHISQFY 385 (624)
Q Consensus 362 edf~eTl~fl~el-~-~~~v~i~~ys 385 (624)
-+...-++|..+. . +..+++.+++
T Consensus 216 ~~lG~iirfa~~n~dvVrgVnfQPVs 241 (475)
T COG1964 216 HELGAIIRFALNNIDVVRGVNFQPVS 241 (475)
T ss_pred HHHHHHHHHHHhccccccccceEEEE
Confidence 7788888888754 2 2344555444
No 235
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=54.16 E-value=3.5e+02 Score=30.75 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCccCCHHHHHHHHHHhCC
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~--yg~d~~~~l~eLL~~l~~~l~ 271 (624)
...++++.-+..+-+.|+..|-+.|.-.+. |+. ..++-.+.|+.+.+.++
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rf-l~edpwerlr~~r~~~~ 83 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRF-LNEDPWERLRTLKKGLP 83 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCC
Confidence 456777777777777788888776654332 221 12344677777777665
No 236
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=53.22 E-value=92 Score=28.98 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 327 YTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
.+.+.+.+.++.++++ |+.- .-+|+|- +.-.++++.+..+.+++++++.++ -|||+.
T Consensus 62 ~~~~~~~~~~~~l~~~--gl~~-v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf------~pgt~~ 119 (128)
T cd02072 62 HGEIDCKGLREKCDEA--GLKD-ILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF------APGTPP 119 (128)
T ss_pred CCHHHHHHHHHHHHHC--CCCC-CeEEEECCCCCChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 5667788899999998 7632 4456664 345678888888999999998654 377764
No 237
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=52.44 E-value=4.2e+02 Score=30.55 Aligned_cols=151 Identities=12% Similarity=0.019 Sum_probs=84.4
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEE-Eeec-CCcchhHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMT-NPPFILEHLKEI 295 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~ir-i~~~-~p~~i~~~l~el 295 (624)
-.+++.++-++-++.|.+.|+++|-.. ++....+ -.+.++++.+.-. ....+. +... +++...+....+
T Consensus 17 g~~~s~eeKl~Ia~~L~~~GVd~IE~G---~p~~s~~----d~~~v~~i~~~~~--~~~~i~~~~r~~r~~~~~~~d~~~ 87 (526)
T TIGR00977 17 GVSFSLEDKIRIAERLDDLGIHYIEGG---WPGANPK----DVQFFWQLKEMNF--KNAKIVAFCSTRRPHKKVEEDKML 87 (526)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCChH----HHHHHHHHHHhCC--CCcEEEEEeeecCCCCCCchHHHH
Confidence 467899999999999999999999863 2222211 1445566654210 112222 2212 232111111113
Q ss_pred HHHHhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEE---EEEEcCCCCCHHHHHHHHHH
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIAT---DIICGFPGETDEDFNQTVNL 370 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~t---d~IvGfPGETeedf~eTl~f 370 (624)
..+...+ ...+|+-+=+.+-.+...+++. ...+.+.+.++.++++ |..+.. +|.-|+- -+.+.+.+.++.
T Consensus 88 ea~~~~~--~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--g~~V~~~~e~f~D~~r-~~~~~l~~~~~~ 162 (526)
T TIGR00977 88 QALIKAE--TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ--GDEVIYDAEHFFDGYK-ANPEYALATLAT 162 (526)
T ss_pred HHHhcCC--CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeeeeccc-CCHHHHHHHHHH
Confidence 3333322 4566665545444445566653 3456667778889988 776543 3323432 346777778888
Q ss_pred HHHcCCCeEEEE
Q 006956 371 IKEYKFPQVHIS 382 (624)
Q Consensus 371 l~el~~~~v~i~ 382 (624)
+.+.+.+.+.+-
T Consensus 163 a~~aGad~i~i~ 174 (526)
T TIGR00977 163 AQQAGADWLVLC 174 (526)
T ss_pred HHhCCCCeEEEe
Confidence 888888876653
No 238
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=51.98 E-value=1.1e+02 Score=29.86 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=49.3
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcChhh---hcCCccEE-EcCCchhHHHHHHHHHhc
Q 006956 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---KELEGVSI-VGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~e~---~~~~~d~V-vG~~~~~~l~ell~~~~~ 167 (624)
++||+++|.=-+-.+-.-.++.+.+++.-+.+++++++=..-++.|-+ .....+.+ +...+.+.+..-+-..++
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHhc
Confidence 459999997655444444677788888877788888776667777743 34455665 777776666654444443
No 239
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=51.72 E-value=3e+02 Score=29.94 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=80.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCC------------------CCceEEE
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRI 280 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~------------------~~~~iri 280 (624)
...+++..+++|++|.+.|..-+.++-++. .-++.+.+|++.++.+ +...+|
T Consensus 31 ~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~---------e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~R- 100 (361)
T COG0821 31 DTADVEATVAQIKALERAGCDIVRVTVPDM---------EAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVR- 100 (361)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEecCCH---------HHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEE-
Confidence 355899999999999999988777764332 1144455554443221 123344
Q ss_pred eecCCcchh--HHHHHHHHHHhCCCcceeccccCCCCC--HHHHHhhcCCCCHHH----HHHHHHHHHHhCCCCEEEEEE
Q 006956 281 GMTNPPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTLSD----FRTVVDTLIELVPGMQIATDI 352 (624)
Q Consensus 281 ~~~~p~~i~--~~l~el~~l~~~~~v~~~l~IGlQSgs--d~vLk~M~R~~t~e~----~~e~I~~lr~~~pgi~i~td~ 352 (624)
+||..+- +.+.++.+.++..+. -+-||+-+|| .++|+++..+ +.|. .++-++.+.+. |+. +|
T Consensus 101 --INPGNig~~~~v~~vVe~Ak~~g~--piRIGVN~GSLek~~~~ky~~p-t~ealveSAl~~a~~~e~l--~f~---~i 170 (361)
T COG0821 101 --INPGNIGFKDRVREVVEAAKDKGI--PIRIGVNAGSLEKRLLEKYGGP-TPEALVESALEHAELLEEL--GFD---DI 170 (361)
T ss_pred --ECCcccCcHHHHHHHHHHHHHcCC--CEEEecccCchhHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC--CCC---cE
Confidence 3565542 345566666665543 5667777665 5667666544 4443 33344445555 444 77
Q ss_pred EEcCCCCCHHHHHHHHHHHHHc
Q 006956 353 ICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 353 IvGfPGETeedf~eTl~fl~el 374 (624)
++-.-.-+..+.-+.++.+.+.
T Consensus 171 ~iS~K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 171 KVSVKASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EEEEEcCCHHHHHHHHHHHHHh
Confidence 7777777777777777666543
No 240
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=51.57 E-value=91 Score=36.62 Aligned_cols=103 Identities=11% Similarity=0.149 Sum_probs=68.2
Q ss_pred CceEEEEecCCccC-hhHHHHHHHHHHhcCceeeCCC--------------CCCcEEEEeecccccchHHHHHHHHHHHh
Q 006956 58 TETIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDNS--------------EEADIWLINTCTVKSPSQSAMDTLIAKCK 122 (624)
Q Consensus 58 ~~~v~i~TlGC~~N-~~Dse~~~~~L~~~G~~~~~~~--------------~~ADlviINTCtv~~~ae~~~~~~ir~~k 122 (624)
.++|++.|+|=-.- ..=+.-..+.|...||+++... ..||+++| |+-.....+.+-.+++.+|
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sga~i~vi--CssD~~Y~~~a~~~~~al~ 571 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAGAQVAVL--CSSDKVYAQQGLEVAKALK 571 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcCCCEEEE--eCCCcchHHHHHHHHHHHH
Confidence 46899999994332 3445666777888899987542 56899999 8876665667778888888
Q ss_pred hCCC-CEEEEccccCcChhhhcCCccE--EEcCCchhHHHHHHH
Q 006956 123 SAKK-PLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVE 163 (624)
Q Consensus 123 ~~~~-~VVVgGc~aq~~~e~~~~~~d~--VvG~~~~~~l~ell~ 163 (624)
..++ .|++.|--+. ..++.....|. .+|..-.+.|..+..
T Consensus 572 ~ag~~~v~lAG~p~~-~~~~~~aGvd~fi~~g~d~~~~L~~~~~ 614 (619)
T TIGR00642 572 AAGAKALYLAGAFKE-FGDDAAEAIDGRLFMKMNVVDTLSSTLD 614 (619)
T ss_pred hCCCCEEEEeCCCcc-hhhHHhcCCcceeEcCCcHHHHHHHHHH
Confidence 8876 6888897554 22233334454 445555444444443
No 241
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=48.71 E-value=99 Score=32.06 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC------CccCCHHHHHHHHHHhCCCCCCceEEEe---ecCCcc--h
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR------DIGVNLPILLNAIVAELPPDGSTMLRIG---MTNPPF--I 288 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~------d~~~~l~eLL~~l~~~l~~~~~~~iri~---~~~p~~--i 288 (624)
.++..++..++..+.+.|+++|.++..|....+. ....+-.+|++.+..... +...+... ..||.. .
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~--~~~~igva~yPe~hp~~~~~ 146 (274)
T cd00537 69 DRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENG--GGFSIGVAAYPEGHPEAPSL 146 (274)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC--CCCccccccCCCcCCCCCCH
Confidence 4455889999999999999999988666665542 111356778887765321 11222221 113321 1
Q ss_pred hHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Q 006956 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (624)
Q Consensus 289 ~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE 359 (624)
...++.|.+-... + ..++ .. .=-|+.+.+.+.++.+++. |+. .-+|.|+..=
T Consensus 147 ~~~~~~L~~Ki~a-G-A~f~-----------iT--Q~~fd~~~~~~~~~~~~~~--gi~--vPIi~GI~p~ 198 (274)
T cd00537 147 EEDIKRLKRKVDA-G-ADFI-----------IT--QLFFDNDAFLRFVDRCRAA--GIT--VPIIPGIMPL 198 (274)
T ss_pred HHHHHHHHHHHHC-C-CCEE-----------ee--cccccHHHHHHHHHHHHHc--CCC--CCEEeecccc
Confidence 1122122211111 1 1111 11 1236778888888888888 753 3577777553
No 242
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.57 E-value=1.1e+02 Score=28.64 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 326 ~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
+++.+.+.+.++.+++. |+.-. -+|+|- |.-.++|+.+-.+.+++++++.++ -|||++
T Consensus 63 ~~~~~~~~~~~~~l~~~--gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF------~pgt~~ 121 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEA--GLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVF------APGTPP 121 (134)
T ss_pred ccCHHHHHHHHHHHHHC--CCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 56777888999999998 76322 256664 334567777777778999987653 377764
No 243
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=48.52 E-value=32 Score=35.02 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCC
Q 006956 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~ 126 (624)
-..+...|+.+||++++- ..+||+|..++ ..|+.- ....+++.++++.|.
T Consensus 121 k~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~Sa-lMTttm-~~~~~viE~L~eeGi 184 (227)
T COG5012 121 KNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSA-LMTTTM-IGMKDVIELLKEEGI 184 (227)
T ss_pred HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEechH-HHHHHH-HHHHHHHHHHHHcCC
Confidence 357888999999999865 46699998843 444432 346788888988874
No 244
>PLN02321 2-isopropylmalate synthase
Probab=48.40 E-value=1.9e+02 Score=34.22 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=77.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCC--CCCce-EE---EeecCCcchhHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP--DGSTM-LR---IGMTNPPFILEH 291 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~--~~~~~-ir---i~~~~p~~i~~~ 291 (624)
-.+++.++-++-++.|.+.|++.|-... ...+.+ + .+.++.|.+.+.. ..... .. ++..+...+.
T Consensus 102 g~~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~Sp~---D-~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId-- 172 (632)
T PLN02321 102 GATLTSKEKLDIARQLAKLGVDIIEAGF---PIASPD---D-LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDID-- 172 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---cCCCcc---H-HHHHHHHHHhcccCCCccccceeeeeehhccHHhHH--
Confidence 4678999999999999999999998742 122221 1 3346666543210 00001 11 1112332222
Q ss_pred HHHHHHHHhCCCcceeccccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCC---HHHHH
Q 006956 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGET---DEDFN 365 (624)
Q Consensus 292 l~el~~l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGET---eedf~ 365 (624)
...+.+.... ...+|+-+ +.|+.-+ +.+++. ...+.+.+.++.++++ |.. ++.++.+..+ .+.+.
T Consensus 173 --~A~~al~~a~-~~~I~i~~-stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~--G~~---~v~fs~EDa~rtd~d~l~ 243 (632)
T PLN02321 173 --AAWEAVKHAK-RPRIHTFI-ATSEIHMEHKLRKTPDEVVEIARDMVKYARSL--GCE---DVEFSPEDAGRSDPEFLY 243 (632)
T ss_pred --HHHHHhcCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEEecccCCCCCHHHHH
Confidence 1222221111 13455555 5555443 555543 3455666777788887 643 4566666544 34445
Q ss_pred HHHHHHHHcCCCeEEE
Q 006956 366 QTVNLIKEYKFPQVHI 381 (624)
Q Consensus 366 eTl~fl~el~~~~v~i 381 (624)
+.++.+.+.+.+.+.+
T Consensus 244 ~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 244 RILGEVIKAGATTLNI 259 (632)
T ss_pred HHHHHHHHcCCCEEEe
Confidence 5566666677776553
No 245
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=48.16 E-value=52 Score=37.58 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCceeeCCCCCCcEE-EEeeccccc--------------chHHHHHHHHHHHhhCCCCEEEE
Q 006956 75 SEYMAGQLSAFGYALTDNSEEADIW-LINTCTVKS--------------PSQSAMDTLIAKCKSAKKPLVVA 131 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~~~~ADlv-iINTCtv~~--------------~ae~~~~~~ir~~k~~~~~VVVg 131 (624)
.+.+...+...|..+++.+++||+| .|||-.-.. ..-..+...|+.+.+.|++|.+.
T Consensus 280 ~esv~~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~Vaia 351 (497)
T PF13552_consen 280 GESVKEHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIA 351 (497)
T ss_pred HHHHHHHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEE
Confidence 4678888999999999999999987 567764322 11234556666666778877763
No 246
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=47.95 E-value=82 Score=29.76 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=45.1
Q ss_pred ecCCccC-hhHHHHHHHHHHhcCceeeCC---------------------CCCCcEEEEeecccccchHHHHHHHHHHHh
Q 006956 65 TFGCSHN-QSDSEYMAGQLSAFGYALTDN---------------------SEEADIWLINTCTVKSPSQSAMDTLIAKCK 122 (624)
Q Consensus 65 TlGC~~N-~~Dse~~~~~L~~~G~~~~~~---------------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k 122 (624)
..|++-| .-+|-++...|.+.||++.+- ++.-|+|-| |+.+ +.+..+++++-
T Consensus 21 vVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdv----FR~~--e~~~~i~~eal 94 (140)
T COG1832 21 VVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDV----FRRS--EAAPEVAREAL 94 (140)
T ss_pred EEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEE----ecCh--hhhHHHHHHHH
Confidence 3577777 568889999999999998653 456788877 5543 35677788887
Q ss_pred hCCCCEEEE
Q 006956 123 SAKKPLVVA 131 (624)
Q Consensus 123 ~~~~~VVVg 131 (624)
+.+++++..
T Consensus 95 ~~~~kv~W~ 103 (140)
T COG1832 95 EKGAKVVWL 103 (140)
T ss_pred hhCCCeEEE
Confidence 778888764
No 247
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=47.93 E-value=28 Score=41.94 Aligned_cols=73 Identities=26% Similarity=0.377 Sum_probs=45.2
Q ss_pred eEEEEecCCccChhHHHHHHHH-----HHhcCce-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~-----L~~~G~~-~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVg 131 (624)
.+++.++||.= -|.|.++.. +++.|+. .+..+..||+++| |=+|+......+..+.++. +.+| |.+|
T Consensus 23 s~w~~~~~~~c--c~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv-~G~vt~~~~~~l~~~~~~~--p~pk~via~G 97 (788)
T PRK13292 23 SLWPMFFGLSC--CFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVI-AGTVFKKMAPSILRLYEQM--AEPKWVISMG 97 (788)
T ss_pred CCcceecCCcc--HHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEE-ecCCcHhhHHHHHHHHHhC--CCCCEEEEec
Confidence 34555555422 778876543 4566775 4788999999999 5577765544444443332 3444 4478
Q ss_pred ccccCc
Q 006956 132 GCVPQG 137 (624)
Q Consensus 132 Gc~aq~ 137 (624)
.|..+.
T Consensus 98 ~Ca~~G 103 (788)
T PRK13292 98 SCANSG 103 (788)
T ss_pred ccccCC
Confidence 886664
No 248
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=47.53 E-value=3.3e+02 Score=27.88 Aligned_cols=152 Identities=7% Similarity=0.066 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEE--eecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l--~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
+.+.-.+-+|++.+.+.|++.+.+ .|.+| -....-. +.+++.+...+ ...+.+...+|.... +.+.
T Consensus 21 ~ad~~~l~~el~~l~~~g~d~lHiDVMDG~F---VPNitfG-p~~i~~i~~~~----~~DvHLMv~~P~~~i---~~~~- 88 (228)
T PRK08091 21 ASNWLKFNETLTTLSENQLRLLHFDIADGQF---SPFFTVG-AIAIKQFPTHC----FKDVHLMVRDQFEVA---KACV- 88 (228)
T ss_pred hcCHHHHHHHHHHHHHCCCCEEEEeccCCCc---CCccccC-HHHHHHhCCCC----CEEEEeccCCHHHHH---HHHH-
Confidence 456678899999999999887664 33322 2211000 45666664322 245666555664322 2222
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCC
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~ 377 (624)
+. + +..+.+-+|+. .+..+.++++|+. |+.+.+.+.+. |+-..++++..++ . +|
T Consensus 89 --~a-G-ad~It~H~Ea~--------------~~~~~~l~~Ik~~--g~~~kaGlaln-P~Tp~~~i~~~l~---~--vD 142 (228)
T PRK08091 89 --AA-G-ADIVTLQVEQT--------------HDLALTIEWLAKQ--KTTVLIGLCLC-PETPISLLEPYLD---Q--ID 142 (228)
T ss_pred --Hh-C-CCEEEEcccCc--------------ccHHHHHHHHHHC--CCCceEEEEEC-CCCCHHHHHHHHh---h--cC
Confidence 22 2 56777778864 1356678899999 88666677776 7766676655544 3 34
Q ss_pred eEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHHHH
Q 006956 378 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 415 (624)
Q Consensus 378 ~v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~L~~l~~ 415 (624)
.+- .++..||-.-..+ . ...-+|.+++.++..
T Consensus 143 ~VL--iMtV~PGfgGQ~f--~--~~~l~KI~~lr~~~~ 174 (228)
T PRK08091 143 LIQ--ILTLDPRTGTKAP--S--DLILDRVIQVENRLG 174 (228)
T ss_pred EEE--EEEECCCCCCccc--c--HHHHHHHHHHHHHHH
Confidence 444 4566677543322 1 223445555555544
No 249
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=47.33 E-value=29 Score=34.13 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=36.1
Q ss_pred hHHHHHHHH-----HHhcCceee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEEccccC
Q 006956 73 SDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQ 136 (624)
Q Consensus 73 ~Dse~~~~~-----L~~~G~~~~-~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVgGc~aq 136 (624)
-|.|.++-. +++.|+..+ ..+..||+++| +=+|+..... +.+.+.+.. +++| |.+|-|...
T Consensus 47 C~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillV-eG~VT~~m~~-~l~~~~e~~-p~pK~VIAvGaCA~~ 115 (181)
T PRK14817 47 CGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMV-VGTVNCKQAP-ILQRVYEQM-ADPKWVMAFGVCASS 115 (181)
T ss_pred HHHHHHHhcCccccHHHhceeeccCCCcceeEEEE-EecCCccchH-HHHHHHHHc-ccCCEEEEecccccc
Confidence 777776543 344566554 77999999999 5577765432 333333332 3344 336777544
No 250
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=47.19 E-value=92 Score=34.80 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=39.5
Q ss_pred EEEEEEEEEecCCeeeee---EEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEeccccccc
Q 006956 427 VERIWITEIAADGIHLGY---VQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDD 485 (624)
Q Consensus 427 ~~~VLve~~~~~g~~~~y---~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~~~ 485 (624)
.+++-|+..+.+|....+ ..|+++ ...+|+.|.|+|++..+.+..|++++..+....
T Consensus 15 ~~~l~i~~l~~~G~Gv~~~~~~~vfV~--~~lPGe~v~v~i~~~~~~~~~~~~~~vl~~sp~ 74 (443)
T PRK13168 15 IITVTIESLDHDGRGVARHNGKTVFIE--GALPGERVEVQVTEDKKQYARAKVVRILKPSPE 74 (443)
T ss_pred EEEEEEEEcCCCCceEEEECCEEEEeC--CCCCCCEEEEEEEEecCcEEEEEEEEEecCCcc
Confidence 345567777655554422 356664 457999999999998887889998877655433
No 251
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=47.06 E-value=32 Score=34.71 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=39.0
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcChh-hhcCCccEEEcCCch
Q 006956 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQI 155 (624)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~e-~~~~~~d~VvG~~~~ 155 (624)
.+.|+++++.-|.-+.+ ...++.++ +..+.||+.|+.+|..|+ +....++++.|..=.
T Consensus 163 P~~Dvii~SaStlvN~T---~d~~Ld~a-k~ak~vvl~GPTa~l~pe~f~~~gvt~iag~kIi 221 (250)
T COG2014 163 PEVDVIIASASTLVNGT---LDMILDRA-KKAKLVVLTGPTAQLLPEFFKGTGVTHIAGTKII 221 (250)
T ss_pred ccccEEEEechhhhcCc---HHHHHhhh-ccCcEEEEeCCCcccchhHHhccCcceEEeeeec
Confidence 35799999765555543 33344443 233568899999999998 456666777777644
No 252
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=46.61 E-value=2.9e+02 Score=26.94 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=67.7
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
.|..+++++++-++.+.+.|++-|.+.-.+ ..-.+.++.+.+..+ ...+-.+.+.. .+.++....
T Consensus 10 ~r~~~~~~~~~~~~~l~~~G~~~vev~~~~---------~~~~~~i~~l~~~~~---~~~iGag~v~~---~~~~~~a~~ 74 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRT---------PGALEAIRALRKEFP---EALIGAGTVLT---PEQADAAIA 74 (190)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHHCC---CCEEEEEeCCC---HHHHHHHHH
Confidence 355679999999999999999988876321 123568888877653 22333333321 223322222
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCC
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~ 377 (624)
.+ ..++|.|-. + .+.++..++. ++ .+|+|.- |.++..+. .+.+.+
T Consensus 75 ---~G--a~~i~~p~~--~----------------~~~~~~~~~~--~~----~~i~gv~--t~~e~~~A----~~~Gad 119 (190)
T cd00452 75 ---AG--AQFIVSPGL--D----------------PEVVKAANRA--GI----PLLPGVA--TPTEIMQA----LELGAD 119 (190)
T ss_pred ---cC--CCEEEcCCC--C----------------HHHHHHHHHc--CC----cEECCcC--CHHHHHHH----HHCCCC
Confidence 21 467775421 1 2355555555 44 4566764 66665444 458999
Q ss_pred eEEEEE
Q 006956 378 QVHISQ 383 (624)
Q Consensus 378 ~v~i~~ 383 (624)
++.+|+
T Consensus 120 ~i~~~p 125 (190)
T cd00452 120 IVKLFP 125 (190)
T ss_pred EEEEcC
Confidence 999864
No 253
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=46.55 E-value=2.3e+02 Score=29.76 Aligned_cols=50 Identities=8% Similarity=0.087 Sum_probs=34.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccC---C---HHHHHHHHHHhC
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV---N---LPILLNAIVAEL 270 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~---~---l~eLL~~l~~~l 270 (624)
-++.+.-++..+..|.+.|+.-.+.. .++.||.+... + ..+.+++|.+.+
T Consensus 54 WTKnp~P~l~~L~~l~~~gy~~yfq~--Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~i 109 (266)
T PF08902_consen 54 WTKNPAPFLPYLDELDERGYPYYFQF--TITGYGKDLEPNVPPKDERIETFRELSERI 109 (266)
T ss_pred ecCCcHHHHhhHHHHHhCCCceEEEE--EeCCCCccccCCCCCHHHHHHHHHHHHHHH
Confidence 35677778899999999999876655 46789988632 3 334445555555
No 254
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=46.22 E-value=3.8e+02 Score=28.26 Aligned_cols=143 Identities=13% Similarity=0.044 Sum_probs=75.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
-.+.+.++=++-++.|.+.|+++|-+. ++..+.. -.+.++++.+... .....++..+-+.. ..+++...+
T Consensus 17 g~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~~~~----e~e~~~~i~~~~~--~~~~~~~~al~r~~-~~die~a~~ 86 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKIGFKEIEVG---FPSASQT----DFDFVRELIEEDL--IPDDVTIQVLTQAR-EDLIERTFE 86 (284)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHccC--CCCCCEEEEEcCCC-hhhHHHHHH
Confidence 467899999999999999999999875 4444432 2477777754310 00112332233321 111221222
Q ss_pred HHhCCCcceeccccCCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCE-EEEEEEEcCCCC----C-HHHHHHHH
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGE----T-DEDFNQTV 368 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~v-Lk~M~R~--~t~e~~~e~I~~lr~~~pgi~-i~td~IvGfPGE----T-eedf~eTl 368 (624)
...... ...+++.+ |.|+.. .+.+|+. ...+.+.+.++.++++ |+. +.+.|.+-|-+| + .+...+.+
T Consensus 87 ~~~~~~-~~~v~i~~-~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~--g~~~~~~~~~~~~~~EDasr~~~~~l~~~~ 162 (284)
T cd07942 87 ALRGAK-KAIVHLYN-ATSPLQRRVVFGKSKEEIIEIAVDGAKLVKEL--AAKYPETDWRFEYSPESFSDTELDFALEVC 162 (284)
T ss_pred HhCCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceEEEEECCccCCCCCHHHHHHHH
Confidence 111110 12455554 445444 4566665 3456677788888887 643 334455555452 2 33344455
Q ss_pred HHHHHc
Q 006956 369 NLIKEY 374 (624)
Q Consensus 369 ~fl~el 374 (624)
+.+.+.
T Consensus 163 ~~~~~~ 168 (284)
T cd07942 163 EAVIDV 168 (284)
T ss_pred HHHHHh
Confidence 555444
No 255
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=46.14 E-value=3.1e+02 Score=29.00 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCC-CceEEEeecCCcchhHH------HHHHH
Q 006956 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEH------LKEIA 296 (624)
Q Consensus 224 e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~-~~~iri~~~~p~~i~~~------l~el~ 296 (624)
+.|-+.+..+.+.|..-|+|.|++..+|+ .++.+.+.++... ..-+.|. .|++.-+.. --.+.
T Consensus 98 ~~i~~~v~~~~~~g~~Pi~lGGdHsit~~---------~~~al~~~~~~~~~vgvi~~D-AH~D~~~~~~~~~~~g~~~~ 167 (307)
T TIGR01227 98 HEIAQTAAALLADHRVPVILGGGHSIAYA---------TFAALAQHYKGTTAIGVINFD-AHFDLRATEDGGPTSGTPFR 167 (307)
T ss_pred HHHHHHHHHHHhcCCeEEEECCcchhHHH---------HHHHHHHhcCCCCeEEEEEEc-cCcCCCCCCCCCCCCchHHH
Confidence 44555556667788888888887766663 3344444332001 2233333 233221110 01133
Q ss_pred HHHhCCC--cceeccccCCCCC--HHHHHhhcCC----CCHHHHHH-----HHHHHHHh---CCCCEEE--EEEE-----
Q 006956 297 EVLRHPC--VYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT-----VVDTLIEL---VPGMQIA--TDII----- 353 (624)
Q Consensus 297 ~l~~~~~--v~~~l~IGlQSgs--d~vLk~M~R~----~t~e~~~e-----~I~~lr~~---~pgi~i~--td~I----- 353 (624)
.++.... ..+.+++|+++.+ ++-++.+++. ++.+++.+ +.+.++.. ...+.++ .|.+
T Consensus 168 ~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~a 247 (307)
T TIGR01227 168 QILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAHA 247 (307)
T ss_pred HHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhhC
Confidence 3443221 1468999999984 3444444332 24444433 23333332 1223344 4445
Q ss_pred --EcCC---CCCHHHHHHHHHHHHHc-CCCeEEEEEeeeCCC
Q 006956 354 --CGFP---GETDEDFNQTVNLIKEY-KFPQVHISQFYPRPG 389 (624)
Q Consensus 354 --vGfP---GETeedf~eTl~fl~el-~~~~v~i~~ysP~PG 389 (624)
+|.| |=|..++.+.++.+... ++-.+.+.-|+|...
T Consensus 248 Pgtg~p~pgGLt~~e~~~il~~l~~~~~vvg~DvvE~~P~~D 289 (307)
T TIGR01227 248 PGVSAPAPGGLYPDELLELVKRIAASDKVRGAEIAEVNPTLD 289 (307)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEEEEEECCCCC
Confidence 4555 56888888888887543 566677888887654
No 256
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=45.63 E-value=5.2e+02 Score=29.66 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCccCCHHHHHHHHHHhCC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~y-g~d~~~~l~eLL~~l~~~l~ 271 (624)
....++.+.-++.+.+.|+..|-..|.-++.- -+-..++-.+.|+.+.+.++
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~ 75 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMP 75 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCC
Confidence 45677777777777778888877765432220 00012344566677766554
No 257
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=45.60 E-value=3.5e+02 Score=27.69 Aligned_cols=130 Identities=12% Similarity=0.195 Sum_probs=86.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
..++.+.|..-++..-.-|...+.+.. | ++|++..... ....+.++.++|..+..-.
T Consensus 22 nNFd~~~V~~i~~AA~~ggAt~vDIAa--------d-----p~LV~~~~~~----s~lPICVSaVep~~f~~aV------ 78 (242)
T PF04481_consen 22 NNFDAESVAAIVKAAEIGGATFVDIAA--------D-----PELVKLAKSL----SNLPICVSAVEPELFVAAV------ 78 (242)
T ss_pred cccCHHHHHHHHHHHHccCCceEEecC--------C-----HHHHHHHHHh----CCCCeEeecCCHHHHHHHH------
Confidence 345677777777766556776655432 1 5666666543 2456888888886443321
Q ss_pred HhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCe
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~ 378 (624)
..- ... +|=||=+.+-.-+|.++.++++++.++.|+..|++.+..++=.-+| .++=.+...-+.+++.|.
T Consensus 79 ~AG---Adl----iEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~---ld~Qv~LA~~L~~~GaDi 148 (242)
T PF04481_consen 79 KAG---ADL----IEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILP---LDQQVQLAEDLVKAGADI 148 (242)
T ss_pred HhC---CCE----EEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCcccc---HHHHHHHHHHHHHhCCcE
Confidence 111 222 4556777787889999999999999999999999988887755554 233445556677788886
Q ss_pred EEE
Q 006956 379 VHI 381 (624)
Q Consensus 379 v~i 381 (624)
++-
T Consensus 149 IQT 151 (242)
T PF04481_consen 149 IQT 151 (242)
T ss_pred EEc
Confidence 653
No 258
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=44.88 E-value=2.5e+02 Score=32.21 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.+++.+++-++.+.+.|+..|.|-| ..+. -.+....+|+++|++.++ ....+.+. +|-+.=.. +....+.+.
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD-taGl---l~P~~~~~LV~~Lk~~~~--~~ipI~~H-~Hnt~GlA-~An~laAie 223 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD-MAAL---LKPQPAYDIVKGIKEACG--EDTRINLH-CHSTTGVT-LVSLMKAIE 223 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC-CccC---CCHHHHHHHHHHHHHhCC--CCCeEEEE-eCCCCCcH-HHHHHHHHH
Confidence 3899999999999999999999875 2322 223467899999988663 23445554 22221111 111222222
Q ss_pred CCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC-----
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK----- 375 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~----- 375 (624)
. + +..++..+-..+ .+...-....++..++.. |+.. |=+.+.+.+..++++++.
T Consensus 224 A-G-ad~vDtai~Glg--------~~aGn~atE~vv~~L~~~--g~~t---------giDl~~L~~i~~~~~~vr~~y~~ 282 (499)
T PRK12330 224 A-G-VDVVDTAISSMS--------LGPGHNPTESLVEMLEGT--GYTT---------KLDMDRLLKIRDHFKKVRPKYKE 282 (499)
T ss_pred c-C-CCEEEeeccccc--------ccccchhHHHHHHHHHhc--CCCC---------CCCHHHHHHHHHHHHHHHHHHhc
Confidence 2 2 677776665542 222223334444444444 3321 223444444444444332
Q ss_pred ----CCeEEEEEeee-CCCCccccCC-CCCHHHHHHHHHHHHHHHHHhCccccCCCcE
Q 006956 376 ----FPQVHISQFYP-RPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLGMEGRV 427 (624)
Q Consensus 376 ----~~~v~i~~ysP-~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~~~~~~~~vG~~ 427 (624)
...+....|.+ .||--+.++. |+...-...|+.++.+ .+..-...+|-.
T Consensus 283 ~~~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~~~ev~~---e~~~Vr~~lG~~ 337 (499)
T PRK12330 283 FESKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMDEVLE---EVPRVRKDAGYP 337 (499)
T ss_pred ccccccCCCCccccCCCCCCchhhHHHHHHHcChhhHHHHHHH---HHHHHHHHcCCC
Confidence 11222334444 7777776665 5555444455444443 333333445554
No 259
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=43.95 E-value=1.9e+02 Score=30.04 Aligned_cols=127 Identities=18% Similarity=0.231 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---cCCHHHHHHHHHHhCCCCCCceEEEee-cCCc----c--h
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGM-TNPP----F--I 288 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~-d~---~~~l~eLL~~l~~~l~~~~~~~iri~~-~~p~----~--i 288 (624)
.++..++...+..+.+.|++.|..+..|....+. +. -.+-.+|++.+.+.. + .++++. .+|. . .
T Consensus 69 ~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~---~--~f~ig~a~~Peghp~~~~~ 143 (272)
T TIGR00676 69 GATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEF---G--DFDIGVAAYPEKHPEAPNL 143 (272)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc---C--CeeEEEEeCCCCCCCCCCH
Confidence 4678889999999999999999855555554332 11 134677888886532 2 234442 3443 1 1
Q ss_pred hHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHH
Q 006956 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTV 368 (624)
Q Consensus 289 ~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl 368 (624)
..+++.|.+-... + +.+ +.. .=-|+.+.+.+.++.+++. |+.+ =++.|+..=+ ....++
T Consensus 144 ~~~~~~L~~K~~a-G-A~f-----------~iT--Q~~fd~~~~~~~~~~~~~~--gi~~--PIi~Gi~p~~--s~k~~~ 202 (272)
T TIGR00676 144 EEDIENLKRKVDA-G-ADY-----------AIT--QLFFDNDDYYRFVDRCRAA--GIDV--PIIPGIMPIT--NFKQLL 202 (272)
T ss_pred HHHHHHHHHHHHc-C-CCe-----------Eee--ccccCHHHHHHHHHHHHHc--CCCC--CEecccCCcC--CHHHHH
Confidence 1222222221111 1 111 111 1247888888999999888 7654 5777775422 233344
Q ss_pred HHHH
Q 006956 369 NLIK 372 (624)
Q Consensus 369 ~fl~ 372 (624)
.|+.
T Consensus 203 ~~~~ 206 (272)
T TIGR00676 203 RFAE 206 (272)
T ss_pred HHHh
Confidence 4544
No 260
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=43.82 E-value=3.5e+02 Score=27.09 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=68.7
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcce
Q 006956 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306 (624)
Q Consensus 227 v~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~ 306 (624)
++-++.+.+.|++++++++-+....+.. .+ .++++++.+... ..+.++ -.+..+. . +..+... + +.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~~--~n-~~~~~~i~~~~~----~pv~~~-ggi~~~~-d---~~~~~~~-G-~~ 98 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDASKRGRE--PL-FELISNLAEECF----MPLTVG-GGIRSLE-D---AKKLLSL-G-AD 98 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcccCCC--CC-HHHHHHHHHhCC----CCEEEE-CCCCCHH-H---HHHHHHc-C-CC
Confidence 3344555678999999998765433332 23 577888876532 233333 2333222 2 3333332 2 56
Q ss_pred eccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC--CEEEEEEEEcCCC------------CCHHHHHHHHHHHH
Q 006956 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG--MQIATDIICGFPG------------ETDEDFNQTVNLIK 372 (624)
Q Consensus 307 ~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg--i~i~td~IvGfPG------------ETeedf~eTl~fl~ 372 (624)
.+-+|-.. ++ +.+. ++.+.+.++. +.+..|+--|+++ ++..+..+.+..+.
T Consensus 99 ~vilg~~~-----l~------~~~~----~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (232)
T TIGR03572 99 KVSINTAA-----LE------NPDL----IEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAE 163 (232)
T ss_pred EEEEChhH-----hc------CHHH----HHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHH
Confidence 66666211 11 1223 3333333322 5566676554221 23444566677778
Q ss_pred HcCCCeEEEEEeee
Q 006956 373 EYKFPQVHISQFYP 386 (624)
Q Consensus 373 el~~~~v~i~~ysP 386 (624)
+.+++.+.+...++
T Consensus 164 ~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 164 QLGAGEILLNSIDR 177 (232)
T ss_pred HcCCCEEEEeCCCc
Confidence 88898888876544
No 261
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=43.38 E-value=3.4e+02 Score=27.41 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006956 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (624)
Q Consensus 225 ~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 304 (624)
+.++-++.+.+.|++++++++-+...++. ....++++++.+... ..-+--+-++. .+. +..++.. +
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~~---~pv~~~GGI~s---~~d---~~~~l~~-G- 93 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEEVF---IPLTVGGGIRS---LED---ARRLLRA-G- 93 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHhCC---CCEEEeCCCCC---HHH---HHHHHHc-C-
Confidence 55556666777899999999766432322 223578888877542 22222221221 122 3333332 2
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc-----------CCCCCHHHHHHHHHHHHH
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG-----------FPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvG-----------fPGETeedf~eTl~fl~e 373 (624)
+..+.+|-... .+.+.+.++++.+.+. .+.+..|+-.+ -+.+|..+..+.+..+.+
T Consensus 94 ~~~v~ig~~~~-----------~~p~~~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 160 (243)
T cd04731 94 ADKVSINSAAV-----------ENPELIREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE 160 (243)
T ss_pred CceEEECchhh-----------hChHHHHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH
Confidence 45555552111 1334445544444322 36677775533 335566666677777888
Q ss_pred cCCCeEEEEEeee
Q 006956 374 YKFPQVHISQFYP 386 (624)
Q Consensus 374 l~~~~v~i~~ysP 386 (624)
.+++.+.++.+..
T Consensus 161 ~G~d~i~v~~i~~ 173 (243)
T cd04731 161 LGAGEILLTSMDR 173 (243)
T ss_pred CCCCEEEEeccCC
Confidence 8999888876553
No 262
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=42.85 E-value=5.5e+02 Score=29.09 Aligned_cols=208 Identities=15% Similarity=0.196 Sum_probs=108.5
Q ss_pred EeCCCCCCCCCCcccCccC--C---CcccCCHHHHHHHHHHHHHC---------CC-------------cEEEEeecCCC
Q 006956 197 PINVGCLGACTYCKTKHAR--G---HLGSYTVESLVGRVRTVIAD---------GV-------------KEVWLSSEDTG 249 (624)
Q Consensus 197 ~isrGCp~~CsFC~ip~~r--G---~~Rsr~~e~Iv~EI~~L~~~---------Gv-------------keI~l~g~d~~ 249 (624)
.-+-||.+.|.||--.... | ++..-.++-|+..+-.+.-+ |+ .+..++|.-.
T Consensus 288 tPslacanKcvfcWrh~tnpv~~~wrwk~d~pevil~gal~lhy~mikqmkgvpgvk~Er~~ea~evrhcalslVgepi- 366 (601)
T KOG1160|consen 288 TPSLACANKCVFCWRHDTNPVGEIWRWKMDAPEVILKGALYLHYNMIKQMKGVPGVKAERFEEAEEVRHCALSLVGEPI- 366 (601)
T ss_pred CCCcccCCCCceeeeccCCcccceEEEecCCchhhhHHHHHHHHHHHHHhhcCCCcCHHHHHhhhhhhhheeeeecccc-
Confidence 4477899999999654332 2 23445677777765443311 21 1355665422
Q ss_pred CCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCH
Q 006956 250 AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL 329 (624)
Q Consensus 250 ~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~ 329 (624)
.|+ .+..+++.|.+..- ...++-.+..|..+. .+.. ...+...+...+...|+...|+...
T Consensus 367 ~yp-----~in~f~k~lH~k~i---ssflvtnaq~pe~~r----nvk~-------vtqlyvsvda~Tktslk~idrPlfk 427 (601)
T KOG1160|consen 367 MYP-----EINPFAKLLHQKLI---SSFLVTNAQFPEDIR----NVKP-------VTQLYVSVDASTKTSLKKIDRPLFK 427 (601)
T ss_pred cch-----hhhHHHHHHHhccc---hHHhcccccChHHHh----chhh-------hheeEEEEeecchhhhcCCCCchHH
Confidence 222 33455555544210 112222223333221 1222 3456667778888999999999653
Q ss_pred ---HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc--CCCCC-HHHH
Q 006956 330 ---SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR--MKKVP-SAVV 403 (624)
Q Consensus 330 ---e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~--~~~vp-~~~~ 403 (624)
|.+++.++.+++.-.--.++.++.=|+ +.+|..+-.+++..-.++.+-+---+-.-.+.+++ |..+| -++.
T Consensus 428 dFwEr~~d~l~~lk~K~qrtvyRlTlVkg~---n~dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~ 504 (601)
T KOG1160|consen 428 DFWERFLDSLKALKKKQQRTVYRLTLVKGW---NSDDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEV 504 (601)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEEEeccc---cccccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHH
Confidence 455556666665422233555555444 45667777788877777766663222222222222 33455 3445
Q ss_pred HHHHHHHHHHHHHhCccccCCCcE
Q 006956 404 KKRSRELTSVFEAFTPYLGMEGRV 427 (624)
Q Consensus 404 ~~R~~~L~~l~~~~~~~~~~vG~~ 427 (624)
.+-..+|.++...++....+-|..
T Consensus 505 v~Fv~eL~~l~~~ye~a~ehahs~ 528 (601)
T KOG1160|consen 505 VEFVFELVDLLQEYEIACEHAHSN 528 (601)
T ss_pred HHHHHHHHHhhhhhhhhhcccCcc
Confidence 556666655555555444444443
No 263
>PLN02540 methylenetetrahydrofolate reductase
Probab=42.63 E-value=1.9e+02 Score=33.62 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=35.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc----c--CCHHHHHHHHHHhC
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----G--VNLPILLNAIVAEL 270 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~----~--~~l~eLL~~l~~~l 270 (624)
|.++.++|.+.+..+.+.|++.|..+..|...-+... + ..-.+|++.|.+..
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~ 125 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKY 125 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhC
Confidence 4566778888899999999999976655655433211 1 24678888887653
No 264
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=42.59 E-value=68 Score=29.60 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCceee-----C-------CCCCCcEEEEeeccccc-chHHHHHHHHHHHhhCCCCEEEEccccC
Q 006956 75 SEYMAGQLSAFGYALT-----D-------NSEEADIWLINTCTVKS-PSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (624)
Q Consensus 75 se~~~~~L~~~G~~~~-----~-------~~~~ADlviINTCtv~~-~ae~~~~~~ir~~k~~~~~VVVgGc~aq 136 (624)
.+.|+..|...|+++. . +..++|+++|-|.|... .....+...++.+..+++++.+=|++-+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~~avfgtgd~ 92 (140)
T TIGR01754 18 AFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSNVAIFGTGET 92 (140)
T ss_pred HHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCEEEEEEcCCC
Confidence 4566677777787653 1 22357999997766532 2223566777776656777766666543
No 265
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=42.44 E-value=5.3e+02 Score=30.28 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 326 EYTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 326 ~~t~e~~~e~I~~lr~~~pgi~-i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
.||.+.+.+.++.+.+. |+. +..-=++|+ =+++++.+.+..+++.
T Consensus 150 ~~t~e~~~~~ak~l~~~--Gad~I~IkDtaG~--l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 150 VHTLDNFLELGKKLAEM--GCDSIAIKDMAGL--LTPTVTVELYAGLKQA 195 (596)
T ss_pred CCCHHHHHHHHHHHHHc--CCCEEEeCCcccC--CCHHHHHHHHHHHHhh
Confidence 58999999999999988 753 221113343 4688888888887764
No 266
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=42.42 E-value=4.8e+02 Score=29.12 Aligned_cols=145 Identities=16% Similarity=0.105 Sum_probs=86.2
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
-.++++++-++-++.|-+.|++.|-......+. .-.+.++.+.... +. ................+.+
T Consensus 18 g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~-------~~~~~~~~i~~~~---~~---~~~~~~~~~~~~~~~~~ea 84 (409)
T COG0119 18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVASP-------GDFEFVRAIAEKA---GL---FICALIAALARAIKRDIEA 84 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh-------hhHHHHHHHHHhc---Cc---ccchhhhhhHHhHHhhHHH
Confidence 467899999999999999999998865432221 1256666665322 22 1111111111111113444
Q ss_pred HHhCCCcceeccccCCCCCHHHH-Hhhc--CCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMN--REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vL-k~M~--R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+...+ ...+|+=+ +.|+--+ ..++ +....+.+.+.++.++++ |+.+..+..-.+ .-+.+.+.+.++.+.+.
T Consensus 85 ~~~a~--~~~i~if~-~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~--g~~~~~~~Ed~~-rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 85 LLEAG--VDRIHIFI-ATSDLHLRYKLKKTREEVLERAVDAVEYARDH--GLEVRFSAEDAT-RTDPEFLAEVVKAAIEA 158 (409)
T ss_pred HHhCC--CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeccc-cCCHHHHHHHHHHHHHc
Confidence 44333 34455534 3444333 3333 234667788889999999 888887777666 45567777888888877
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+.+.+++
T Consensus 159 ga~~i~l 165 (409)
T COG0119 159 GADRINL 165 (409)
T ss_pred CCcEEEE
Confidence 7776664
No 267
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=42.31 E-value=88 Score=35.08 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=41.8
Q ss_pred cEEEEEEEEEecCCeee---eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEecccc
Q 006956 426 RVERIWITEIAADGIHL---GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQ 482 (624)
Q Consensus 426 ~~~~VLve~~~~~g~~~---~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~ 482 (624)
.+.++.|+....+|... +-..|||+ ..++|+-|.|++++..+.+-.|+++...+.
T Consensus 3 ~~~~~~I~~l~~~G~Gva~~~~~~vfVp--~alPge~v~~~~~~~~~~~~~a~~~~i~~~ 60 (432)
T COG2265 3 QIIEVTIEDLGHNGEGVARHDGKVVFVP--GALPGEEVEVRVTKVKKKYAEAKLVKVLEA 60 (432)
T ss_pred ceEEEEEEEcCCCCeeEEEecCceEEeC--CCCCCcEEEEEEEeccccceeeEeeeeccC
Confidence 56788888876666544 22357776 458999999999999999999998876443
No 268
>PRK15452 putative protease; Provisional
Probab=41.94 E-value=1.3e+02 Score=33.97 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=55.7
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC-CHHHHHHHHHHHHH
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE-TDEDFNQTVNLIKE 373 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE-Teedf~eTl~fl~e 373 (624)
+..++..+ ...|.+|.++++-+. -...++.+++.++++.++++ |..+...+= -+|.+ ..+.+.+.++.+.+
T Consensus 16 l~aAi~~G--ADaVY~G~~~~~~R~---~~~~f~~edl~eav~~ah~~--g~kvyvt~n-~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 16 MRYAFAYG--ADAVYAGQPRYSLRV---RNNEFNHENLALGINEAHAL--GKKFYVVVN-IAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHCC--CCEEEECCCccchhh---hccCCCHHHHHHHHHHHHHc--CCEEEEEec-CcCCHHHHHHHHHHHHHHHh
Confidence 44444433 678999999988643 34678899999999999999 866543211 23443 34566777777788
Q ss_pred cCCCeEEEEE
Q 006956 374 YKFPQVHISQ 383 (624)
Q Consensus 374 l~~~~v~i~~ 383 (624)
+++|.+-+.-
T Consensus 88 ~gvDgvIV~d 97 (443)
T PRK15452 88 MKPDALIMSD 97 (443)
T ss_pred CCCCEEEEcC
Confidence 8888777653
No 269
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=40.82 E-value=3.1e+02 Score=28.59 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=19.8
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Q 006956 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (624)
Q Consensus 348 i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~ 382 (624)
+..=+|..+|-|..+++ .+.+.+.+++.+.+-
T Consensus 116 vdGlIipDLP~ee~~~~---~~~~~~~gl~~I~lv 147 (259)
T PF00290_consen 116 VDGLIIPDLPPEESEEL---REAAKKHGLDLIPLV 147 (259)
T ss_dssp EEEEEETTSBGGGHHHH---HHHHHHTT-EEEEEE
T ss_pred CCEEEEcCCChHHHHHH---HHHHHHcCCeEEEEE
Confidence 45567778887655544 456777887655543
No 270
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=38.82 E-value=60 Score=33.36 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=41.7
Q ss_pred cCCccChhHHH-HHHHHHHhcC--ce--ee---CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EEccccC
Q 006956 66 FGCSHNQSDSE-YMAGQLSAFG--YA--LT---DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQ 136 (624)
Q Consensus 66 lGC~~N~~Dse-~~~~~L~~~G--~~--~~---~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-VgGc~aq 136 (624)
-||.|+..|.. .+...|...- |. .+ ..++ .|+++|- =+|.+ +.-.+.++++|++.+.|| +|-|.++
T Consensus 15 ~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPE-vDValVE-GsV~~---ee~lE~v~ElRekakivVA~GsCA~~ 89 (247)
T COG1941 15 SGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPE-VDVALVE-GSVCD---EEELELVKELREKAKIVVALGSCAVT 89 (247)
T ss_pred cchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCc-ccEEEEe-cccCc---HHHHHHHHHHHHhCcEEEEEecchhc
Confidence 48999988874 5555555331 11 11 1244 8999994 46663 345677888877655444 7888766
Q ss_pred c
Q 006956 137 G 137 (624)
Q Consensus 137 ~ 137 (624)
.
T Consensus 90 G 90 (247)
T COG1941 90 G 90 (247)
T ss_pred C
Confidence 4
No 271
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=38.65 E-value=2.7e+02 Score=31.94 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC-C
Q 006956 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-P 302 (624)
Q Consensus 224 e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~-~ 302 (624)
+.|+++++++.+.|+.-|.+.+..+ ++....+..+++.+.+.. ...+.+.+.+|..+.. .++. .
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~----~~pISIDT~~~~v~ea-------AL~aGA 229 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DDDPDVVKEKVKTALDAL----DSPVIADTPTLDELYE-------ALKAGA 229 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhC----CCcEEEeCCCHHHHHH-------HHHcCC
Confidence 8899999999999999877755422 111123666777766532 3567777666643322 2221 1
Q ss_pred CcceeccccCCCCC-HHHHHhhc------------CCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCCCHHHHHHHH
Q 006956 303 CVYSFLHVPVQSGS-DAVLSAMN------------REYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTV 368 (624)
Q Consensus 303 ~v~~~l~IGlQSgs-d~vLk~M~------------R~~t~e~~~e~I~~lr~~~pgi-~i~td~IvGfPGETeedf~eTl 368 (624)
.+.+.+ ..++ ++++..+. .....+.+.+.++.++++ |+ .+..|=++||++. .+.+++
T Consensus 230 diINsV----s~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~--Gi~~IIlDPglg~~~~---~l~~sL 300 (499)
T TIGR00284 230 SGVIMP----DVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS--GYSKVAADPSLSPPLL---GLLESI 300 (499)
T ss_pred CEEEEC----CccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC--CCCcEEEeCCCCcchH---HHHHHH
Confidence 122222 1111 23322111 122347788999999999 98 7888999997532 366666
Q ss_pred HHHHH
Q 006956 369 NLIKE 373 (624)
Q Consensus 369 ~fl~e 373 (624)
+.++.
T Consensus 301 ~~l~~ 305 (499)
T TIGR00284 301 IRFRR 305 (499)
T ss_pred HHHHH
Confidence 66553
No 272
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=38.11 E-value=5.8e+02 Score=27.99 Aligned_cols=140 Identities=25% Similarity=0.328 Sum_probs=81.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC--------------CCccCCHHHHHHHHHHhCCCCCCceEEEeecC
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG--------------RDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg--------------~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~ 284 (624)
...+++.-+++|+.|.+.|..=+.+.-+|.-+-. .|...+..-.|.++.. +...+|+ |
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~-----G~~~iRI---N 108 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEA-----GADALRI---N 108 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHh-----CCCEEEE---C
Confidence 3678999999999999999887776643321100 0111122223333321 3445665 5
Q ss_pred Ccch---hHHHHHHHHHHhCCCcceeccccCCCCC--HHHHHhhcCCCCH----HHHHHHHHHHHHhCCCCEEEEEEEEc
Q 006956 285 PPFI---LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTL----SDFRTVVDTLIELVPGMQIATDIICG 355 (624)
Q Consensus 285 p~~i---~~~l~el~~l~~~~~v~~~l~IGlQSgs--d~vLk~M~R~~t~----e~~~e~I~~lr~~~pgi~i~td~IvG 355 (624)
|-.+ .+.+.++.+.++..++ -+-||+-||| .++|++.+.+ +. +..++-++.+.+. |+ .||++-
T Consensus 109 PGNig~~~~~v~~vv~~ak~~~i--pIRIGvN~GSL~~~~~~~yg~~-t~eamveSAl~~~~~le~~--~f---~~iviS 180 (360)
T PRK00366 109 PGNIGKRDERVREVVEAAKDYGI--PIRIGVNAGSLEKDLLEKYGEP-TPEALVESALRHAKILEEL--GF---DDIKIS 180 (360)
T ss_pred CCCCCchHHHHHHHHHHHHHCCC--CEEEecCCccChHHHHHHcCCC-CHHHHHHHHHHHHHHHHHC--CC---CcEEEE
Confidence 6555 4466677777766654 5678888776 4555555322 33 3445556666666 55 477777
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 006956 356 FPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 356 fPGETeedf~eTl~fl~el 374 (624)
+-.-+....-+..+++.+.
T Consensus 181 ~KsS~v~~~i~ayrlla~~ 199 (360)
T PRK00366 181 VKASDVQDLIAAYRLLAKR 199 (360)
T ss_pred EEcCCHHHHHHHHHHHHhc
Confidence 7666666666666666543
No 273
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=37.81 E-value=2.5e+02 Score=28.46 Aligned_cols=130 Identities=13% Similarity=0.092 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchhHHHHHHHHHHhCCC
Q 006956 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAEVLRHPC 303 (624)
Q Consensus 225 ~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~-~~p~~i~~~l~el~~l~~~~~ 303 (624)
+.++-++.+.+.|+++++++|-|-. .|.+ .-.++++++.+... ..+.++- ++. ++.+.+++..+
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~~----~~v~vgGGir~------~edv~~~l~~G- 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRG---DNDEAIRELAAAWP----LGLWVDGGIRS------LENAQEWLKRG- 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhCC----CCEEEecCcCC------HHHHHHHHHcC-
Confidence 4556677777889999999987643 2432 33678888877532 2233331 111 12234444433
Q ss_pred cceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--CCCHHHHHHHHHHHHHcCCCeEEE
Q 006956 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLIKEYKFPQVHI 381 (624)
Q Consensus 304 v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfP--GETeedf~eTl~fl~el~~~~v~i 381 (624)
+.++-+|-++.+++.++. +++.+.+. .+.++.|+-=|.- ..+..+..+.++.+.+. +..+++
T Consensus 101 -a~~viigt~~~~~~~~~~------------~~~~~~~~--~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~ 164 (233)
T cd04723 101 -ASRVIVGTETLPSDDDED------------RLAALGEQ--RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIV 164 (233)
T ss_pred -CCeEEEcceeccchHHHH------------HHHhcCCC--CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEE
Confidence 567778887776432222 22222111 3556666643310 13556677788888888 887777
Q ss_pred EEee
Q 006956 382 SQFY 385 (624)
Q Consensus 382 ~~ys 385 (624)
.-..
T Consensus 165 ~di~ 168 (233)
T cd04723 165 LDID 168 (233)
T ss_pred EEcC
Confidence 6554
No 274
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=37.42 E-value=1.3e+02 Score=30.02 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=76.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-----CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-----~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 293 (624)
+....++.+++++++.+.|+.-|-+-++.+..+..... ..+..+++.+.+.. ....+.+.+.+|..+..-+
T Consensus 14 ~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~---~~~plSIDT~~~~v~~~aL- 89 (210)
T PF00809_consen 14 RKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN---PDVPLSIDTFNPEVAEAAL- 89 (210)
T ss_dssp CHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH---TTSEEEEEESSHHHHHHHH-
T ss_pred cccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC---CCeEEEEECCCHHHHHHHH-
Confidence 34457888999999999999988887654433221111 24555566665411 2467888877775433221
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhc-----------C--C----CCH----HHHHHHHHHH-------HHhCCC
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-----------R--E----YTL----SDFRTVVDTL-------IELVPG 345 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~-----------R--~----~t~----e~~~e~I~~l-------r~~~pg 345 (624)
+. ...+.+-+ .|++- +++++..+. + + .+. +-+.++++.+ .++ |
T Consensus 90 ---~~--g~~~ind~-~~~~~-~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~--G 160 (210)
T PF00809_consen 90 ---KA--GADIINDI-SGFED-DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKA--G 160 (210)
T ss_dssp ---HH--TSSEEEET-TTTSS-STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHT--T
T ss_pred ---Hc--CcceEEec-ccccc-cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHc--C
Confidence 11 11111111 22222 555554322 1 0 111 2233444444 446 8
Q ss_pred C---EEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 346 M---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 346 i---~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+ .+..|-.+|| +-+.+.-.++++.++.+
T Consensus 161 i~~~~Ii~DPgigf-~~~~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 161 IPRERIILDPGIGF-GKDPEQNLELLRNIEEL 191 (210)
T ss_dssp --GGGEEEETTTTS-STTHHHHHHHHHTHHHH
T ss_pred CCHHHEeeccccCc-CCCHHHHHHHHHHHHHH
Confidence 7 7999999999 77777777777777665
No 275
>PRK10812 putative DNAse; Provisional
Probab=37.39 E-value=1.4e+02 Score=31.14 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcch--hHHHHHHHHHH
Q 006956 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVL 299 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i--~~~l~el~~l~ 299 (624)
+.++++++++ +.|+..++.+|.+... ....+ ++.+..+ .....++ ++|..+ ...++++.+++
T Consensus 21 d~~~vl~~a~---~~gv~~~~~~~~~~~~--------~~~~~-~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~l~~~~ 84 (265)
T PRK10812 21 DVDDVLAKAA---ARDVKFCLAVATTLPG--------YRHMR-DLVGERD---NVVFSCG-VHPLNQDEPYDVEELRRLA 84 (265)
T ss_pred CHHHHHHHHH---HcCCCEEEEeCCCHHH--------HHHHH-HHHhhCC---CeEEEEE-eCCCCCCChhHHHHHHHHh
Confidence 5677766654 6799888887754322 23332 3334343 2455666 788765 23455566666
Q ss_pred hCCCcceec-cccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 300 RHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 300 ~~~~v~~~l-~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
.++. +..| .+|+.-.-+. -.+....+-|...++..++. +..+..+.- +...++++.+++.+
T Consensus 85 ~~~~-vvaIGEiGLD~~~~~----~~~~~Q~~vf~~ql~lA~e~--~~Pv~iH~r--------~a~~~~l~iL~~~~ 146 (265)
T PRK10812 85 AEEG-VVAMGETGLDYYYTP----ETKVRQQESFRHHIQIGREL--NKPVIVHTR--------DARADTLAILREEK 146 (265)
T ss_pred cCCC-EEEEEeeecCcCCCC----CCHHHHHHHHHHHHHHHHHh--CCCeEEEee--------CchHHHHHHHHhhc
Confidence 5554 4455 6777653110 00112334577778888887 766655532 12246777777654
No 276
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=36.40 E-value=63 Score=32.74 Aligned_cols=49 Identities=33% Similarity=0.571 Sum_probs=34.9
Q ss_pred CCCCCCCCceEEEE---ecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEE
Q 006956 51 LSPKIPGTETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101 (624)
Q Consensus 51 ~~~~~~~~~~v~i~---TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviI 101 (624)
.++.-|..++||+. |-+..+|. -..|...|.+.||.++++|++|..|+=
T Consensus 14 LdPV~~~~rtVyv~vrNTSd~~~~l--~~~i~~~L~~kGY~vv~~P~~A~Y~lq 65 (215)
T PF05818_consen 14 LDPVAPSQRTVYVQVRNTSDKDINL--ESQIISALQAKGYQVVDDPDEAHYWLQ 65 (215)
T ss_pred eCCCCcccceEEEEEecCCCCccch--HHHHHHHHHHCCCEEecChhhCeEEEE
Confidence 33445667888875 45555532 345778899999999999999997753
No 277
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=36.24 E-value=2.5e+02 Score=27.98 Aligned_cols=152 Identities=15% Similarity=0.199 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE--EeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 221 YTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~--l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
-+.-.+.+|++.+.+.|+..+. +.|.++ -.... -=.+++++|.+... -...+.+...+|....+ .+.+.
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~f---vpn~~-~g~~~i~~i~~~~~--~~~DvHLMv~~P~~~i~---~~~~~ 79 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGHF---VPNLT-FGPDIIKAIRKITD--LPLDVHLMVENPERYIE---EFAEA 79 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSSS---SSSB--B-HHHHHHHHTTSS--SEEEEEEESSSGGGHHH---HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeccccc---CCccc-CCHHHHHHHhhcCC--CcEEEEeeeccHHHHHH---HHHhc
Confidence 3455678899999999988765 455333 22211 11678888876432 23456666567754333 23332
Q ss_pred HhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCe
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~ 378 (624)
. ..++.+-+|+.+ +..+.++.+|++ |+....-+- |+...+.++. ++. .+|.
T Consensus 80 g-----~~~i~~H~E~~~--------------~~~~~i~~ik~~--g~k~Gialn---P~T~~~~~~~---~l~--~vD~ 130 (201)
T PF00834_consen 80 G-----ADYITFHAEATE--------------DPKETIKYIKEA--GIKAGIALN---PETPVEELEP---YLD--QVDM 130 (201)
T ss_dssp T------SEEEEEGGGTT--------------THHHHHHHHHHT--TSEEEEEE----TTS-GGGGTT---TGC--CSSE
T ss_pred C-----CCEEEEcccchh--------------CHHHHHHHHHHh--CCCEEEEEE---CCCCchHHHH---Hhh--hcCE
Confidence 1 356666677443 244678889998 887754442 5544444432 222 3455
Q ss_pred EEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHHHHH
Q 006956 379 VHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 416 (624)
Q Consensus 379 v~i~~ysP~PGTpa~~~~~vp~~~~~~R~~~L~~l~~~ 416 (624)
+. .++..||..-..+ ....-+|.+++.++..+
T Consensus 131 Vl--vMsV~PG~~Gq~f----~~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 131 VL--VMSVEPGFGGQKF----IPEVLEKIRELRKLIPE 162 (201)
T ss_dssp EE--EESS-TTTSSB------HGGHHHHHHHHHHHHHH
T ss_pred EE--EEEecCCCCcccc----cHHHHHHHHHHHHHHHh
Confidence 44 4566778654333 23344566666666654
No 278
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=36.18 E-value=60 Score=31.35 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=40.8
Q ss_pred EecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEE
Q 006956 64 KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (624)
Q Consensus 64 ~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVV 130 (624)
-+-||+++..--+.-...+++. ..+.+||+|||=-+-.+..-.-++..+..+-..|.+|++
T Consensus 68 gs~gCrLD~~~La~A~~~l~~a------l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt 128 (159)
T PF10649_consen 68 GSRGCRLDPGALAEASAALRRA------LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLT 128 (159)
T ss_pred CCcccccCHHHHHHHHHHHHHH------HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEE
Confidence 4679999977666666666543 235699999987554333334566667777777887665
No 279
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.03 E-value=4.6e+02 Score=26.28 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=67.9
Q ss_pred HHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcc
Q 006956 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305 (624)
Q Consensus 226 Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~ 305 (624)
.++-++.+.+.|++++.+.+-+...-+. ....++++++.+... ..+.++ -..... + ++..++.. + +
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~---~~~~~~i~~i~~~~~----~~l~v~-GGi~~~-~---~~~~~~~~-G-a 99 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGE---RKNAEAIEKIIEAVG----VPVQLG-GGIRSA-E---DAASLLDL-G-V 99 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCC---cccHHHHHHHHHHcC----CcEEEc-CCcCCH-H---HHHHHHHc-C-C
Confidence 4445566678899999998765433222 234677777776542 233332 111111 1 23333332 2 5
Q ss_pred eeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE------EcCCCCCHHHHHHHHHHHHHcCCCeE
Q 006956 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII------CGFPGETDEDFNQTVNLIKEYKFPQV 379 (624)
Q Consensus 306 ~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~I------vGfPGETeedf~eTl~fl~el~~~~v 379 (624)
..+++|-....+ .+.+.++.+.+... .+.++.|+. -|.-.++..+..+..+.+.+.+++.+
T Consensus 100 ~~v~iGs~~~~~-----------~~~~~~i~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i 166 (241)
T PRK13585 100 DRVILGTAAVEN-----------PEIVRELSEEFGSE--RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSI 166 (241)
T ss_pred CEEEEChHHhhC-----------hHHHHHHHHHhCCC--cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 677776544321 22233333332111 244444432 24333333366677777788899988
Q ss_pred EEEEee
Q 006956 380 HISQFY 385 (624)
Q Consensus 380 ~i~~ys 385 (624)
++....
T Consensus 167 ~~~~~~ 172 (241)
T PRK13585 167 LFTNVD 172 (241)
T ss_pred EEEeec
Confidence 776643
No 280
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=35.95 E-value=1.7e+02 Score=28.57 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEE
Q 006956 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (624)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ 383 (624)
+.+...++.+.+++.+|++.+... .|+- ++++-++.++.+.+.+++.+.+..
T Consensus 57 ~~~v~~~~~~~l~~~yP~l~i~g~--~g~f--~~~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 57 KPDVLQQLKVKLIKEYPKLKIVGA--FGPL--EPEERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEE--CCCC--ChHHHHHHHHHHHHcCCCEEEEEc
Confidence 455666778889999999998764 5553 455667789999999999887763
No 281
>PRK09271 flavodoxin; Provisional
Probab=35.58 E-value=1e+02 Score=29.27 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCceee-------------CCCCCCcEEEEeecccccch-HHHHHHHHHHHhh---CCCCEEEEccc
Q 006956 75 SEYMAGQLSAFGYALT-------------DNSEEADIWLINTCTVKSPS-QSAMDTLIAKCKS---AKKPLVVAGCV 134 (624)
Q Consensus 75 se~~~~~L~~~G~~~~-------------~~~~~ADlviINTCtv~~~a-e~~~~~~ir~~k~---~~~~VVVgGc~ 134 (624)
.+.|+..|...|+++. .+..++|+|+|-|.|.-... ...+...+..++. .++++.|=|.+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 18 AREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 5667777888898652 11235799999887764321 1234444444433 45556555554
No 282
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.55 E-value=14 Score=34.37 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=14.7
Q ss_pred EeCCCCCCCCCCcccCc
Q 006956 197 PINVGCLGACTYCKTKH 213 (624)
Q Consensus 197 ~isrGCp~~CsFC~ip~ 213 (624)
+..+||-++|+||.+..
T Consensus 75 KFADG~GH~C~YCq~r~ 91 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRF 91 (169)
T ss_pred ccccccCcccchhhhhH
Confidence 56899999999998864
No 283
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.50 E-value=5.5e+02 Score=26.99 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEe-ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 222 TVESLVGRVRTVIADGVKEVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
++++++++++.+.+.|++.|-+= |. +. ....+.++++.+.++ ...+++.. |...-.+...++.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~-------~~-~~d~~~v~~lr~~~g---~~~l~vD~-n~~~~~~~A~~~~~~l~ 201 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGG-------DL-EDDIERIRAIREAAP---DARLRVDA-NQGWTPEEAVELLRELA 201 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCC-------Ch-hhHHHHHHHHHHhCC---CCeEEEeC-CCCcCHHHHHHHHHHHH
Confidence 68999999999999999988762 21 11 234678888887653 34566652 32221222233444443
Q ss_pred CCCcceeccccCCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCC-EEEEEEEE-cCCCCCHHHHHHH
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGM-QIATDIIC-GFPGETDEDFNQT 367 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~R~-----------~t~e~~~e~I~~lr~~~pgi-~i~td~Iv-GfPGETeedf~eT 367 (624)
..+ ..++.=|+...+-+.++.+.+. ++.+++.++++ .. ++ .+..|... | ....+.+.
T Consensus 202 ~~~-l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~---~~--~~d~v~~~~~~~G----Gi~~~~~~ 271 (316)
T cd03319 202 ELG-VELIEQPVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAG---GG--AYDGINIKLMKTG----GLTEALRI 271 (316)
T ss_pred hcC-CCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHh---cC--CCCEEEEeccccC----CHHHHHHH
Confidence 333 4677777765555666666443 23333333322 11 21 12222221 2 24666777
Q ss_pred HHHHHHcCCC
Q 006956 368 VNLIKEYKFP 377 (624)
Q Consensus 368 l~fl~el~~~ 377 (624)
..++++.++.
T Consensus 272 ~~~a~~~gi~ 281 (316)
T cd03319 272 ADLARAAGLK 281 (316)
T ss_pred HHHHHHcCCC
Confidence 7777777764
No 284
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.32 E-value=1.5e+02 Score=26.35 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=43.7
Q ss_pred EEecCCccChhHHHHHHHHHHhcCceeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-
Q 006956 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (624)
Q Consensus 63 i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV- 129 (624)
|.-+||..+..=.+++...|...|...... ..+-|++++=| ..... ..+.+.++.+|++|.+||
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS--~sG~t-~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAIS--NSGET-DELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEe--CCCCC-HHHHHHHHHHHHCCCeEEE
Confidence 455666677777888888888778554211 23457777733 33322 357788899999998866
Q ss_pred EEc
Q 006956 130 VAG 132 (624)
Q Consensus 130 VgG 132 (624)
+++
T Consensus 80 iT~ 82 (128)
T cd05014 80 ITG 82 (128)
T ss_pred EeC
Confidence 444
No 285
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=34.80 E-value=1.8e+02 Score=25.72 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=43.6
Q ss_pred EEecCCccChhHHHHHHHHHHhcCceeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-
Q 006956 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (624)
Q Consensus 63 i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV- 129 (624)
|.-+||..+..=...++..|...|+..... ..+-|++++= +..... ..+.+.++.++++|.++|
T Consensus 16 i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i--S~~g~~-~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 16 IYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAI--SFSGET-KETVEAAEIAKERGAKVIA 92 (139)
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEE--eCCCCC-HHHHHHHHHHHHcCCeEEE
Confidence 344577777788888888888888654311 2334677663 333333 356777888888888765
Q ss_pred EEcc
Q 006956 130 VAGC 133 (624)
Q Consensus 130 VgGc 133 (624)
+++-
T Consensus 93 iT~~ 96 (139)
T cd05013 93 ITDS 96 (139)
T ss_pred EcCC
Confidence 5554
No 286
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=33.96 E-value=7.3e+02 Score=28.00 Aligned_cols=140 Identities=15% Similarity=0.136 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCccCCHHHHHHHHHHhCCCCCCceEE--------Eeec-CCcchh
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLR--------IGMT-NPPFIL 289 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg-~d~~~~l~eLL~~l~~~l~~~~~~~ir--------i~~~-~p~~i~ 289 (624)
..+.++.++-++.|.+.|+..|-+.|...+... +-..++-.+.++.+.+.++ . ..+. +++. +|+++.
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~--~-~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK--K-TKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC--C-CEEEEEeccccccccccCchhhH
Confidence 567888898899999999999988765432210 0012344678888877554 2 2221 1221 344443
Q ss_pred HHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHHHHHH
Q 006956 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQT 367 (624)
Q Consensus 290 ~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGETeedf~eT 367 (624)
+.. +......+ ...+++.. +.|+- ..+.++++.++++ |..+...+ ..+ |--|.+-+.+.
T Consensus 99 ~~~--v~~A~~~G--vd~irif~-~lnd~-----------~n~~~~v~~ak~~--G~~v~~~i~~t~~-p~~~~~~~~~~ 159 (448)
T PRK12331 99 ESF--VQKSVENG--IDIIRIFD-ALNDV-----------RNLETAVKATKKA--GGHAQVAISYTTS-PVHTIDYFVKL 159 (448)
T ss_pred HHH--HHHHHHCC--CCEEEEEE-ecCcH-----------HHHHHHHHHHHHc--CCeEEEEEEeecC-CCCCHHHHHHH
Confidence 332 23333332 44454443 33332 1356678888888 76654433 233 66677888888
Q ss_pred HHHHHHcCCCeEEE
Q 006956 368 VNLIKEYKFPQVHI 381 (624)
Q Consensus 368 l~fl~el~~~~v~i 381 (624)
++.+.+.+.+.+.+
T Consensus 160 a~~l~~~Gad~I~i 173 (448)
T PRK12331 160 AKEMQEMGADSICI 173 (448)
T ss_pred HHHHHHcCCCEEEE
Confidence 88888888876654
No 287
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=33.80 E-value=5.2e+02 Score=26.24 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006956 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (624)
Q Consensus 225 ~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 304 (624)
+.++-++.+.+.|+++++++|-|- ..|.+ .+ .++++++.+... .++.++- . + ..++++..++..+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~-~~g~~--~n-~~~i~~i~~~~~----~pv~vgG-G---i-rs~edv~~~l~~G-- 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDA-AFGRG--SN-RELLAEVVGKLD----VKVELSG-G---I-RDDESLEAALATG-- 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccc-cCCCC--cc-HHHHHHHHHHcC----CCEEEcC-C---C-CCHHHHHHHHHCC--
Confidence 455666777789999999998774 33432 34 489999987542 2333331 1 1 1112234444332
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE---EEcCCC--CCHHHHHHHHHHHHHcCCCeE
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI---ICGFPG--ETDEDFNQTVNLIKEYKFPQV 379 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~---IvGfPG--ETeedf~eTl~fl~el~~~~v 379 (624)
+.++.+|-.... +++-+.++++.+.+ .+.++.|+ -+=..| ++..+..+.++.+.+.++..+
T Consensus 98 a~kvviGs~~l~-----------~p~l~~~i~~~~~~---~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~i 163 (241)
T PRK14024 98 CARVNIGTAALE-----------NPEWCARVIAEHGD---RVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRY 163 (241)
T ss_pred CCEEEECchHhC-----------CHHHHHHHHHHhhh---hEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEE
Confidence 455555544322 22333344444433 23344444 111123 234455666666777888776
Q ss_pred EEEEe
Q 006956 380 HISQF 384 (624)
Q Consensus 380 ~i~~y 384 (624)
-++.-
T Consensus 164 iv~~~ 168 (241)
T PRK14024 164 VVTDV 168 (241)
T ss_pred EEEee
Confidence 66543
No 288
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.80 E-value=4e+02 Score=27.52 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=32.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc------------------------CCCCCHHHHHHHHHHHHHcC
Q 006956 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG------------------------FPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 320 Lk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvG------------------------fPGETeedf~eTl~fl~el~ 375 (624)
.+++..+.+.+++.+.++.+|+..+++.+. .+++- +|.+..++..+.++.+++.+
T Consensus 62 ~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~g 140 (256)
T TIGR00262 62 LRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHG 140 (256)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCC
Confidence 445556667777777777776542233222 22221 24455566667777777777
Q ss_pred CCeE
Q 006956 376 FPQV 379 (624)
Q Consensus 376 ~~~v 379 (624)
++.+
T Consensus 141 l~~i 144 (256)
T TIGR00262 141 VKPI 144 (256)
T ss_pred CcEE
Confidence 6544
No 289
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=33.36 E-value=1.2e+02 Score=33.46 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeC
Q 006956 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (624)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~ 387 (624)
+..+.|++.+..+++.+|++.+-+.++- +.+.+++.+.++.+++.+.+.+-++..+|.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~---~~s~~~~~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIME---EYNKDAWEEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccC---CCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 4678888888888877777777666552 258999999999999999999999988876
No 290
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=32.32 E-value=1.5e+02 Score=25.96 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=37.8
Q ss_pred CceEEEEec-CCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeeccccc-ch--HHHHHHHHHHH-hhCCCCEEEEc
Q 006956 58 TETIYMKTF-GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PS--QSAMDTLIAKC-KSAKKPLVVAG 132 (624)
Q Consensus 58 ~~~v~i~Tl-GC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~-~a--e~~~~~~ir~~-k~~~~~VVVgG 132 (624)
.+-+.+.|- ||+--.+=-. ...|. ++ +.||.|-+.||++.. +. -..+.++.++. .+.+.+||+|-
T Consensus 28 v~viaf~tCGgCpGrlvpn~--~k~lk--~~------egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv~gT 97 (101)
T COG5561 28 VRVIAFITCGGCPGRLVPNQ--IKQLK--GK------EGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVVMGT 97 (101)
T ss_pred EEEEEEEEcCCCCcchhHHH--HHHHh--hc------cccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEEeec
Confidence 566788888 8997443222 22232 22 348999999999887 21 11223343432 34578888864
No 291
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=32.10 E-value=3.5e+02 Score=27.69 Aligned_cols=135 Identities=10% Similarity=0.078 Sum_probs=73.6
Q ss_pred HHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceec
Q 006956 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFL 308 (624)
Q Consensus 229 EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l 308 (624)
-.+.++++|-+|+.+-.+.+ ...+.+-+.++.+. ...-+.+.+..|..+. ++..+... .+..|
T Consensus 34 a~~~~~~rgr~ef~~~~e~~-------~~~i~~e~~~~~~~----~~vivnv~~~~~ee~~----~~a~~v~~--~~d~I 96 (231)
T TIGR00736 34 ASRDIEKRGRKEFSFNLEEF-------NSYIIEQIKKAESR----ALVSVNVRFVDLEEAY----DVLLTIAE--HADII 96 (231)
T ss_pred HHHHHHHcCCcccCcCcccH-------HHHHHHHHHHHhhc----CCEEEEEecCCHHHHH----HHHHHHhc--CCCEE
Confidence 34567788988864211110 01233333444221 2233344444443322 23333332 25677
Q ss_pred cccCCCCCHHHHHhhc-C--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEee
Q 006956 309 HVPVQSGSDAVLSAMN-R--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (624)
Q Consensus 309 ~IGlQSgsd~vLk~M~-R--~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ys 385 (624)
.|.+-...+++.+.=. - ..+.+.+.+.++.+++. ++.+..=+=.|. +.++..+..+.+++.+.+.+++..++
T Consensus 97 diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~---~~~~~~~~a~~l~~aGad~i~Vd~~~ 171 (231)
T TIGR00736 97 EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC---IPLDELIDALNLVDDGFDGIHVDAMY 171 (231)
T ss_pred EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC---CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence 7776666665542111 0 13678888888888866 666555554444 34456677778899999999997544
No 292
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.10 E-value=3.5e+02 Score=29.23 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.++++.+++++.+++.|++.+-+= + |.+. ..-.+.++++.+.+. +...+++. .|-..-.+...++.+.+.
T Consensus 137 ~~~e~~~~~a~~~~~~Gf~~~Kik---v---g~~~-~~d~~~v~~vRe~~G--~~~~l~vD-aN~~~~~~~A~~~~~~l~ 206 (352)
T cd03328 137 YDDDRLREQLSGWVAQGIPRVKMK---I---GRDP-RRDPDRVAAARRAIG--PDAELFVD-ANGAYSRKQALALARAFA 206 (352)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEee---c---CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 478999999999999999988762 1 1111 112577888887775 45677776 343222222223333333
Q ss_pred CCCcceeccccCCCCCHHHHHhhcCC
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMNRE 326 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~R~ 326 (624)
.-+ ..++.=|+...+-+.++.+.+.
T Consensus 207 ~~~-~~~~EeP~~~~d~~~~~~l~~~ 231 (352)
T cd03328 207 DEG-VTWFEEPVSSDDLAGLRLVRER 231 (352)
T ss_pred HhC-cchhhCCCChhhHHHHHHHHhh
Confidence 322 3566666766665566555443
No 293
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.87 E-value=4.3e+02 Score=24.62 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHh-CCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 327 YTLSDFRTVVDTLIEL-VPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 327 ~t~e~~~e~I~~lr~~-~pgi~i~td~IvGf-PGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
++...+.+.++.+++. .+++ -+++|- +.-.+.++.+..+.+++++++.++ -|||++
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~----~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf------~~~~~~ 123 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDI----LLYVGGNLVVGKHDFEEVEKKFKEMGFDRVF------PPGTDP 123 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCC----eEEEECCCCCCccChHHHHHHHHHcCCCEEE------CcCCCH
Confidence 4667788889999988 2233 355554 334566778888899999987653 356664
No 294
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=31.74 E-value=1.1e+02 Score=30.47 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=31.9
Q ss_pred HHHHHHHHHH-hcCceee--CC--------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 006956 74 DSEYMAGQLS-AFGYALT--DN--------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (624)
Q Consensus 74 Dse~~~~~L~-~~G~~~~--~~--------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV 129 (624)
-.+.|+..|+ ..||+++ ++ .+++|+||+|+|.-..... ..++.++++-+.|..+|
T Consensus 20 ~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~-~~~~al~~~v~~Ggglv 85 (217)
T PF06283_consen 20 AKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTD-EQRAALRDYVENGGGLV 85 (217)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-H-HHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCH-HHHHHHHHHHHcCCCEE
Confidence 4567788888 6789875 22 2679999999987211222 23444555556776555
No 295
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=31.27 E-value=6.3e+02 Score=26.37 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------cCCHHHHHHHHHHhCCCCCCceEEEeecCCcc------
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF------ 287 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~------~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~------ 287 (624)
.++..++..++..+.+.|++.|.++..|....|... .....+|++.+.+... ....+.+. .+|..
T Consensus 81 d~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~--~~~~i~va-~~P~~hp~~~~ 157 (287)
T PF02219_consen 81 DRNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYG--DDFSIGVA-GYPEGHPEAPD 157 (287)
T ss_dssp TSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHG--GGSEEEEE-E-TTHHTTCSS
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcC--cccccccc-cCCCCCccccC
Confidence 456789999999999999999988777765544311 1236788888875432 22344443 34421
Q ss_pred hhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC--EEEEEEE
Q 006956 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDII 353 (624)
Q Consensus 288 i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi--~i~td~I 353 (624)
+...+..+.+-... + ..++ .. .--|+.+.+.+.++.+++. |+ .+...++
T Consensus 158 ~~~~~~~l~~Ki~a-G-A~f~-----------iT--Q~~fd~~~~~~~~~~~~~~--g~~~pIi~GI~ 208 (287)
T PF02219_consen 158 FEAELKRLKKKIDA-G-ADFI-----------IT--QPFFDAEAFERFLDRLREA--GIDVPIIPGIM 208 (287)
T ss_dssp HHHHHHHHHHHHHT-T-ESEE-----------EE--EE-SSHHHHHHHHHHHHHT--THTSEEEEEEE
T ss_pred HHHHHHHHHHHHHC-C-CCEE-----------ec--cccCCHHHHHHHHHHHHHc--CCCCcEEEEEe
Confidence 11122222221111 1 1221 11 1237888899999999998 65 5544444
No 296
>PLN02615 arginase
Probab=30.96 E-value=7.1e+02 Score=26.91 Aligned_cols=155 Identities=16% Similarity=0.268 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH-------HHHH
Q 006956 223 VESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKE 294 (624)
Q Consensus 223 ~e~Iv~EI~~L~~~-GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~-------~l~e 294 (624)
.+.|-+.++.+.+. +..-|+|.|++..+| -.++++.+..+ ....-+.|. .|++.-.+ +---
T Consensus 132 ~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~---------~~iral~~~~~-~~v~vI~fD-AH~Dl~~~~~g~~~shgs~ 200 (338)
T PLN02615 132 MNVISESVKLVMEEEPLRPLVLGGDHSISY---------PVVRAVSEKLG-GPVDILHLD-AHPDIYHAFEGNKYSHASS 200 (338)
T ss_pred HHHHHHHHHHHHhcCCCceEEECcchHhhH---------HHHHHHHHHhC-CCeEEEEEe-cCcCCCCCCCCCCcCchhH
Confidence 34444445555554 545567767665555 24555544331 023344444 34332111 1111
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHHHhhcCC----CCHHH---HHHHHHHHHHh--CCCCEEEEEE--E-------EcC
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE----YTLSD---FRTVVDTLIEL--VPGMQIATDI--I-------CGF 356 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~----~t~e~---~~e~I~~lr~~--~pgi~i~td~--I-------vGf 356 (624)
+..++..+...+.+++|+++.+.+-...+++. ++..+ ..+.++.++.. .+.+.++.|+ + +|-
T Consensus 201 ~rr~~e~~~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgt 280 (338)
T PLN02615 201 FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSH 280 (338)
T ss_pred HHHHhhCCCcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeHhhhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCC
Confidence 33344333234789999999987766655432 12222 24455555431 1224555543 3 244
Q ss_pred C---CCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCC
Q 006956 357 P---GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (624)
Q Consensus 357 P---GETeedf~eTl~fl~el~~~~v~i~~ysP~PG 389 (624)
| |=|..++.+.++.+.. ++--+-+.-++|...
T Consensus 281 pepgGLt~~e~l~il~~l~~-~vvG~DvvEv~P~~D 315 (338)
T PLN02615 281 IEPGGLSFRDVLNILHNLQG-DVVGADVVEFNPQRD 315 (338)
T ss_pred CCCCCCCHHHHHHHHHHhhC-CEEEEEEEEECCCCC
Confidence 4 4567777777766643 554556667776644
No 297
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=30.75 E-value=2.3e+02 Score=30.80 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=52.5
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~ 382 (624)
...+.+|.+-.+ ++.-...++.+++.+.++.++++ |..+...+=.=+-.+..+.+.+.++++.++++|.+-+.
T Consensus 27 ADaVY~G~~~~~---~R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 27 ADAVYIGEKEFG---LRRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred CCEEEeCCcccc---cccccccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEc
Confidence 567888888444 33333458999999999999999 87543333222234556779999999999999988765
No 298
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.73 E-value=2.4e+02 Score=26.91 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=45.9
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceee-------CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~-------~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-V 130 (624)
++|++ +|+..+..=.+++...|...|.... ....+-|++++=| +.... ..+.+.++.+|+.|.+|| +
T Consensus 31 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS--~sG~t-~~~i~~~~~ak~~g~~ii~I 105 (179)
T TIGR03127 31 KRIFV--AGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAIS--GSGET-ESLVTVAKKAKEIGATVAAI 105 (179)
T ss_pred CEEEE--EecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEe--CCCCc-HHHHHHHHHHHHCCCeEEEE
Confidence 45555 4555667777888888888886543 1233457877744 33322 356778888999998765 6
Q ss_pred Eccc
Q 006956 131 AGCV 134 (624)
Q Consensus 131 gGc~ 134 (624)
++-.
T Consensus 106 T~~~ 109 (179)
T TIGR03127 106 TTNP 109 (179)
T ss_pred ECCC
Confidence 6644
No 299
>PRK13774 formimidoylglutamase; Provisional
Probab=30.72 E-value=4.9e+02 Score=27.64 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH----HHHHHHHH
Q 006956 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE----HLKEIAEV 298 (624)
Q Consensus 223 ~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~----~l~el~~l 298 (624)
.+.|-+.+..+.+.|..-|+|.|++..+|| .++.+.+..+.....-+.|. .|.+.-++ .---+..+
T Consensus 106 ~~~i~~~v~~i~~~g~~pivlGGdHsit~g---------~~~a~~~~~~~~~igvI~~D-AH~Dlr~~~~~~~g~~~~~i 175 (311)
T PRK13774 106 QKEFAMLAAKSIANHRQTFLLGGGHDIAYA---------QYLATRKVYPTQSIGVINID-AHFDTRAEQQSTSGTSFRQI 175 (311)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCchHHHHH---------HHHHHHhhcCCCceEEEEeC-CCCCCCCCCCCCCChHHHHH
Confidence 344555566677788888888887776664 23334333220012233333 22211110 00013333
Q ss_pred HhCCCcceeccccCCCCC--HHHHHhhcCC----CCHHHHHH--------HHHHHHHhCCCCEEEEE--EE-------Ec
Q 006956 299 LRHPCVYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT--------VVDTLIELVPGMQIATD--II-------CG 355 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgs--d~vLk~M~R~----~t~e~~~e--------~I~~lr~~~pgi~i~td--~I-------vG 355 (624)
+......+.+++|+++.. ++.++.+++. ++.+++.+ +++.+.+....+.++.| .+ +|
T Consensus 176 ~e~~~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~aPGtg 255 (311)
T PRK13774 176 LEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAFAPGVS 255 (311)
T ss_pred HhcCCCCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhhCCCCC
Confidence 332222467889999874 5544444332 35555533 44444321112444444 34 45
Q ss_pred CC---CCCHHHHHHHHHHHHH-cCCCeEEEEEeeeCCC
Q 006956 356 FP---GETDEDFNQTVNLIKE-YKFPQVHISQFYPRPG 389 (624)
Q Consensus 356 fP---GETeedf~eTl~fl~e-l~~~~v~i~~ysP~PG 389 (624)
-| |=|..++.+.++.+.+ .++-.+.+.-|+|...
T Consensus 256 tP~pgGLt~~e~l~il~~l~~~~~v~g~DivE~nP~~D 293 (311)
T PRK13774 256 APAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYD 293 (311)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCCCC
Confidence 54 4567777777777643 3555667777777644
No 300
>PHA01735 hypothetical protein
Probab=30.14 E-value=74 Score=26.37 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccC----CCCCHHHHHHH
Q 006956 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM----KKVPSAVVKKR 406 (624)
Q Consensus 358 GETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~----~~vp~~~~~~R 406 (624)
.-|-.|+....+|+++.+++- .|.+|+|+..+ |++..+..++|
T Consensus 29 eATtaDL~AA~d~Lk~NdItg------v~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 29 EATTADLRAACDWLKSNDITG------VAVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred cccHHHHHHHHHHHHHCCCce------eeCCCCHHHHHHhcCccCCHHHHHhc
Confidence 347788999999999988754 47899998764 56666666554
No 301
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.88 E-value=1.9e+02 Score=27.54 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=42.1
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEe-----eccccc--chHHHHHHHHHHHhh--CCCCEEE
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-----TCTVKS--PSQSAMDTLIAKCKS--AKKPLVV 130 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviIN-----TCtv~~--~ae~~~~~~ir~~k~--~~~~VVV 130 (624)
.+.+..+|+.=.. +..+...|.. .....+|+|+|+ .+.... ...+.+.++++++++ .+.+|++
T Consensus 40 ~~~~~n~g~~G~t--~~~~~~~l~~------~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv 111 (191)
T cd01836 40 GVRWRLFAKTGAT--SADLLRQLAP------LPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVV 111 (191)
T ss_pred ceEEEEEecCCcC--HHHHHHHHHh------cccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 4667788875554 5666677765 123578999993 222121 123567778888877 5678888
Q ss_pred Eccc
Q 006956 131 AGCV 134 (624)
Q Consensus 131 gGc~ 134 (624)
.+..
T Consensus 112 ~~~p 115 (191)
T cd01836 112 TAVP 115 (191)
T ss_pred ECCC
Confidence 7753
No 302
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=29.85 E-value=7.1e+02 Score=26.54 Aligned_cols=134 Identities=15% Similarity=0.254 Sum_probs=75.0
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCCC----ccCCH----HHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 227 VGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNL----PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 227 v~EI~~L~~~GvkeI~l~g~d~~~yg~d----~~~~l----~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
++.++.+.+.|++.+.|+=-..+.++.. ....| .++++++.+ + ...+-++ |.. .+...++.++
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~-l----GmiiDvS--H~s--~~~~~dv~~~ 186 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNR-L----GIIIDLS--HLS--ERTFWDVLDI 186 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHH-c----CCEEEcC--CCC--HHHHHHHHHh
Confidence 6788999999999998884333333321 11122 456666643 2 1233333 221 1122223343
Q ss_pred HhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC----CCCCHHHHHHHHHHHHHc
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF----PGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf----PGETeedf~eTl~fl~el 374 (624)
...|-+ +=+.+.+.+..-.|..+-++ ++.+.+. |=.+...+.-.| +.-|.+++.+-++.+.++
T Consensus 187 s~~Pvi-------aSHsn~ral~~h~RNltD~~----i~~ia~~--GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l 253 (309)
T cd01301 187 SNAPVI-------ASHSNARALCDHPRNLTDAQ----LKAIAET--GGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDL 253 (309)
T ss_pred cCCCEE-------EeccChHHhcCCCCCCCHHH----HHHHHHc--CCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 333422 22445555555566666555 4455566 656666665555 357889999999987774
Q ss_pred -CCCeEEEE
Q 006956 375 -KFPQVHIS 382 (624)
Q Consensus 375 -~~~~v~i~ 382 (624)
+.+++.+-
T Consensus 254 ~G~dhVgiG 262 (309)
T cd01301 254 IGIDHVGLG 262 (309)
T ss_pred cCCCeEEEC
Confidence 78877773
No 303
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.78 E-value=52 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCceeeCCCCC-----CcEEEE
Q 006956 75 SEYMAGQLSAFGYALTDNSEE-----ADIWLI 101 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~~~~-----ADlviI 101 (624)
-.-+...|++.||++++...+ +|.++|
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVv 41 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQDLQNVDAIVV 41 (80)
T ss_pred chHHHHHHHHCCCEEEecCCccccCCcCEEEE
Confidence 346789999999999876443 566666
No 304
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.26 E-value=1.7e+02 Score=30.33 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006956 320 LSAMNREYTLSDFRTVVDTLIELVPG 345 (624)
Q Consensus 320 Lk~M~R~~t~e~~~e~I~~lr~~~pg 345 (624)
.++++.+.+.+++.+.++.+|+..++
T Consensus 64 ~~AL~~G~~~~~~~~~~~~~r~~~~~ 89 (258)
T PRK13111 64 LRALAAGVTLADVFELVREIREKDPT 89 (258)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 56667777788888888888754333
No 305
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=28.53 E-value=2.8e+02 Score=25.77 Aligned_cols=66 Identities=12% Similarity=0.286 Sum_probs=38.5
Q ss_pred eEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeeccccc--------chHHHHHHHHHHHhhCCCCEEEE
Q 006956 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS--------PSQSAMDTLIAKCKSAKKPLVVA 131 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~--------~ae~~~~~~ir~~k~~~~~VVVg 131 (624)
.+.+.+.|+.-..... +...|... . ....+|+|+|. ++.-+ ...+.+.++++++++.+++||+.
T Consensus 36 ~~~v~n~g~~G~~~~~--~~~~l~~~----~-~~~~pd~v~i~-~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 36 DVTVINAGVSGDTTAG--GLARLPAL----L-AQHKPDLVILE-LGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred CeEEEecCcCCcccHH--HHHHHHHH----H-HhcCCCEEEEe-ccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4677888877554432 22333221 0 11367999983 34322 12345677888888888888877
Q ss_pred cc
Q 006956 132 GC 133 (624)
Q Consensus 132 Gc 133 (624)
+.
T Consensus 108 ~~ 109 (177)
T cd01822 108 GM 109 (177)
T ss_pred ec
Confidence 64
No 306
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=28.41 E-value=2.4e+02 Score=23.95 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
.+.+.+..+.+++..|+..+..-+.-+ +.-++.+.++-+.+.+...+.+.++.+.+|...
T Consensus 16 ~~~~~~~~~~l~~~~~~~~v~~a~~~~----~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~ 75 (101)
T cd03409 16 KKDIEAQAHNLAESLPDFPYYVGFQSG----LGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEV 75 (101)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHcCCCeEEEEeCccccChhh
Confidence 346677777887876665555555554 233577788888888999999999999987654
No 307
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=27.82 E-value=64 Score=34.20 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=34.6
Q ss_pred HHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhh-CCCCEE-EE--ccccCcCh
Q 006956 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS-AKKPLV-VA--GCVPQGSR 139 (624)
Q Consensus 78 ~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~-~~~~VV-Vg--Gc~aq~~~ 139 (624)
+...|.+.|. .+.+-|++|+|+|+|.... .=...++.+++= .+.+.+ ++ ||.|..-.
T Consensus 91 v~~LL~ktgv----~p~dIdiLVvncs~f~ptP-SLsamIvnr~~mr~di~~~nLsGMGCsAglia 151 (290)
T PF08392_consen 91 VDDLLAKTGV----KPSDIDILVVNCSLFNPTP-SLSAMIVNRYGMRSDIKSYNLSGMGCSAGLIA 151 (290)
T ss_pred HHHHHHHcCC----CHHHCCEEEEECcCCCcCC-cHHHHHHHHhCCCcCeeeecccCCcchhhHHH
Confidence 4556666674 3678999999999986432 123345666642 244433 33 69877644
No 308
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=27.24 E-value=7.4e+02 Score=25.96 Aligned_cols=117 Identities=17% Similarity=0.294 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC---c-c--CCHHHHHHHHHHhCCCCCCceEEEee-cCCcc---hh
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---I-G--VNLPILLNAIVAELPPDGSTMLRIGM-TNPPF---IL 289 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d---~-~--~~l~eLL~~l~~~l~~~~~~~iri~~-~~p~~---i~ 289 (624)
.++.+++.+.+..+.+.|++.|..+..|....+.+ . + ..-.+|++.+..... . .+.++. .+|.. ..
T Consensus 70 ~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~--~--~f~igva~~Pe~Hp~~~ 145 (281)
T TIGR00677 70 NMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYG--D--YFCIGVAGYPEGHPEAE 145 (281)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCC--C--ceEEEEEECCCCCCCCC
Confidence 34556888888888899999997666666543321 1 1 235788888765432 1 233432 35531 11
Q ss_pred HHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 006956 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (624)
Q Consensus 290 ~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf 356 (624)
....++..+.+. ++.|-+-+..+ =-|+.+.+.+.++.+++. |+.+ =+|.|+
T Consensus 146 ~~~~d~~~L~~K----------i~aGA~f~iTQ--~~Fd~~~~~~f~~~~~~~--gi~~--PIi~GI 196 (281)
T TIGR00677 146 SVELDLKYLKEK----------VDAGADFIITQ--LFYDVDNFLKFVNDCRAI--GIDC--PIVPGI 196 (281)
T ss_pred CHHHHHHHHHHH----------HHcCCCEeecc--ceecHHHHHHHHHHHHHc--CCCC--CEEeec
Confidence 111112222211 00111111122 246788888888889888 6543 457776
No 309
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.18 E-value=2.1e+02 Score=27.59 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEE
Q 006956 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (624)
Q Consensus 328 t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ 383 (624)
+.+...++.+.+++.+||+.+....= | --++++-++.++.+.+.+++.+.+..
T Consensus 57 ~~~~~~~~~~~l~~~yP~l~ivg~~~-g--~f~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 57 SEEVLEKAAANLRRRYPGLRIVGYHH-G--YFDEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC-C--CCChhhHHHHHHHHHHcCCCEEEEEC
Confidence 44556667888999999988653322 2 12778888999999999999887763
No 310
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=27.10 E-value=4.1e+02 Score=27.46 Aligned_cols=110 Identities=20% Similarity=0.308 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEee--c-----CCcchhHHHHH
Q 006956 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM--T-----NPPFILEHLKE 294 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~--~-----~p~~i~~~l~e 294 (624)
+++++++.++.+-+.|+..+++....++.++.. .+-.-++..+.... .+++++. + +|-.+.+.+.-
T Consensus 21 ~~~~~~~~a~~ae~~Gfd~~w~~eh~~~~~~~~--~~p~~~~a~~a~~T-----~~i~lg~~v~~~~~~~P~~~A~~~at 93 (307)
T PF00296_consen 21 PLDELVELAQLAEELGFDSVWVSEHHFTDYGSS--PDPFVLLAALAART-----KRIRLGTAVTPLPLRHPVRLAEQIAT 93 (307)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-SSSSTTTST--S-HHHHHHHHHHT------SSSEEEEEEEECSSS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCccccc--hhHHHHHHHHhhcc-----CccceeeeeecccccchHHHHHHHHH
Confidence 589999999998889999999987666655432 23345666665543 2344442 2 23233333222
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHH-HhhcCCC--CHHHHHHHHHHHHHhC
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELV 343 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vL-k~M~R~~--t~e~~~e~I~~lr~~~ 343 (624)
| +.+. + -++.+|+=+|+...- ..++..+ ..+.+.+.++.+++..
T Consensus 94 l-d~ls-~---GR~~lgig~G~~~~~~~~~G~~~~~~~~~~~E~~~~i~~l~ 140 (307)
T PF00296_consen 94 L-DQLS-G---GRFILGIGRGSSPDEFRAFGIPPDERYARMEEYLEVIRRLW 140 (307)
T ss_dssp H-HHHT-T---S-EEEEEESTSHHHHHHHCT-SHHHHHHHHHHHHHHHHHHH
T ss_pred h-hhcC-C---CCceeEeeccCChhhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 2 2222 2 267788888887776 6665542 3445555555555553
No 311
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=26.94 E-value=2.3e+02 Score=29.76 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=48.3
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCC
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~------------~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~ 126 (624)
++|+|...| .+..=.++++..|...|+.... ...+-|++++=| ....+ ..+.+.++.+|++|.
T Consensus 43 ~~I~i~G~G--~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS--~sG~t-~~~~~~~~~ak~~g~ 117 (321)
T PRK11543 43 GKVVVSGIG--KSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFIS--YSGGA-KELDLIIPRLEDKSI 117 (321)
T ss_pred CcEEEEecC--hhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEe--CCCCc-HHHHHHHHHHHHcCC
Confidence 367776666 7777888999999999975431 124558887733 33333 357888899999998
Q ss_pred CEE-EEccc
Q 006956 127 PLV-VAGCV 134 (624)
Q Consensus 127 ~VV-VgGc~ 134 (624)
+|| ++|-.
T Consensus 118 ~vI~iT~~~ 126 (321)
T PRK11543 118 ALLAMTGKP 126 (321)
T ss_pred eEEEEECCC
Confidence 766 66643
No 312
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=26.87 E-value=6.4e+02 Score=26.92 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEe-ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 222 TVESLVGRVRTVIADGVKEVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
++++++++++.+.+.|++.|-+- |.+... + +....-.+.++++.+.++ ....+++.. |-..-.+...++.+.+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-~-~~~~~d~~~v~~ir~~~g--~~~~l~vDa-N~~~~~~~a~~~~~~l~ 213 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-G-EDLREDLARVRAVREAVG--PDVDLMVDA-NGRWDLAEAIRLARALE 213 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-h-HHHHHHHHHHHHHHHhhC--CCCEEEEEC-CCCCCHHHHHHHHHHhC
Confidence 78999999999999999988773 211000 0 000123677888887664 455677763 32221222223434443
Q ss_pred CCCcceeccccCCCCCHHHHHhh
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAM 323 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M 323 (624)
..+ +.++.=|+...+-.-++.+
T Consensus 214 ~~~-i~~iEqP~~~~~~~~~~~l 235 (357)
T cd03316 214 EYD-LFWFEEPVPPDDLEGLARL 235 (357)
T ss_pred ccC-CCeEcCCCCccCHHHHHHH
Confidence 333 4566666655443434333
No 313
>COG1679 Predicted aconitase [General function prediction only]
Probab=26.85 E-value=1.1e+02 Score=33.54 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=49.0
Q ss_pred eEEEEecCCccC-hhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccC
Q 006956 60 TIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (624)
Q Consensus 60 ~v~i~TlGC~~N-~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq 136 (624)
.+-++++||+|- ..+-..++..|+..+ .+.+.++||-.|+.|...+.+ .-+++.+++.|.++|-.=|+.-
T Consensus 289 epdli~iGcPHaS~~E~~~la~~l~~r~-----~~~~~~~~V~~sr~v~~~a~~--~G~~~~le~~g~~vv~DtC~vV 359 (403)
T COG1679 289 EPDLIALGCPHASLEELRRLAELLKGRK-----RPAGVPLYVTTSRAVYAQARK--EGYLAKLEELGVKVVSDTCMVV 359 (403)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHhccC-----CCCCCCEEEEcCHHHHHHHhh--hhhHHHHHHcCCEEecCceeEE
Confidence 567899999987 556777888887765 234567888888877765432 2336667778888887778654
No 314
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.63 E-value=89 Score=27.52 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEcc
Q 006956 75 SEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (624)
Q Consensus 75 se~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc 133 (624)
.+.+...-.+.|.++++.+.+||++|+-.-+.-+.. . -.|+||++|+-
T Consensus 20 ~~vl~AAA~ka~l~ii~tp~dAeLviV~G~sipnd~--~---------l~GKkv~i~d~ 67 (103)
T COG3925 20 HTVLGAAAHKAGLEIIDTPNDAELVIVFGSSIPNDS--A---------LNGKKVWIGDI 67 (103)
T ss_pred HHHHHHHHHHCCCeeeCCCCcccEEEEeccccCCCc--c---------ccCceEEEecH
Confidence 344555567789999999999999999654444321 1 14678888875
No 315
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=26.61 E-value=2.1e+02 Score=31.33 Aligned_cols=136 Identities=24% Similarity=0.303 Sum_probs=73.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh-----CCCC-----------------CCc
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-----LPPD-----------------GST 276 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~-----l~~~-----------------~~~ 276 (624)
..++++..+++|..|.+.|..-+.+.-+|.- -.+-|.+|.+. .+.+ ...
T Consensus 26 ~t~Dv~atv~QI~~L~~aGceivRvavp~~~---------~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~v~ 96 (359)
T PF04551_consen 26 DTRDVEATVAQIKRLEEAGCEIVRVAVPDME---------AAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEAVD 96 (359)
T ss_dssp -TT-HHHHHHHHHHHHHCT-SEEEEEE-SHH---------HHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC-S
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCCCHH---------HHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHHhC
Confidence 3578999999999999999988877654321 13333333333 1100 122
Q ss_pred eEEEeecCCcch-----------hHHHHHHHHHHhCCCcceeccccCCCCC--HHHHHhhcCCCCH----HHHHHHHHHH
Q 006956 277 MLRIGMTNPPFI-----------LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTL----SDFRTVVDTL 339 (624)
Q Consensus 277 ~iri~~~~p~~i-----------~~~l~el~~l~~~~~v~~~l~IGlQSgs--d~vLk~M~R~~t~----e~~~e~I~~l 339 (624)
.+|+ ||-.+ .+.+.++.+.++..++ -+-||+-||| .++++++ +.+. +..++-++.+
T Consensus 97 kiRI---NPGNi~~~~~~~~g~~~~~~~~vv~~ake~~i--pIRIGvN~GSL~~~~~~ky--~~t~~amvesA~~~~~~l 169 (359)
T PF04551_consen 97 KIRI---NPGNIVDEFQEELGSIREKVKEVVEAAKERGI--PIRIGVNSGSLEKDILEKY--GPTPEAMVESALEHVRIL 169 (359)
T ss_dssp EEEE----TTTSS----SS-SS-HHHHHHHHHHHHHHT---EEEEEEEGGGS-HHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred eEEE---CCCcccccccccccchHHHHHHHHHHHHHCCC--CEEEecccccCcHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 4554 56666 4566666666665543 5667777775 5556555 3333 3455666667
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHH-HHcC
Q 006956 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLI-KEYK 375 (624)
Q Consensus 340 r~~~pgi~i~td~IvGfPGETeedf~eTl~fl-~el~ 375 (624)
.+. |+ .|+++-+-.-+....-+..+++ +++.
T Consensus 170 e~~--~f---~~iviSlKsSdv~~~i~ayr~la~~~d 201 (359)
T PF04551_consen 170 EEL--GF---DDIVISLKSSDVPETIEAYRLLAERMD 201 (359)
T ss_dssp HHC--T----GGEEEEEEBSSHHHHHHHHHHHHHH--
T ss_pred HHC--CC---CcEEEEEEeCChHHHHHHHHHHHHhcC
Confidence 776 54 3566666555555544555544 3444
No 316
>TIGR00035 asp_race aspartate racemase.
Probab=26.33 E-value=54 Score=33.11 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=46.4
Q ss_pred CceEEEE-ecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeeccc---c----cchHHHHHHHHHHHhhCCCCEE
Q 006956 58 TETIYMK-TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV---K----SPSQSAMDTLIAKCKSAKKPLV 129 (624)
Q Consensus 58 ~~~v~i~-TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv---~----~~ae~~~~~~ir~~k~~~~~VV 129 (624)
.++|.+. |-| ...+......|++.|++++. +.....=.|..+-+ . ..+.+.+.+.++.+.+++...|
T Consensus 117 ~~~VgvLaT~~----T~~s~~y~~~l~~~g~~v~~-p~~~~~~~i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~i 191 (229)
T TIGR00035 117 VKKAGLLGTKG----TMKDGVYEREMKKHGIEIVT-PDKEEQEAIMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGI 191 (229)
T ss_pred CCEEEEEecHH----HHHhHHHHHHHHHCCCEEEC-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEE
Confidence 4678877 666 77888899999999998775 33222111222211 1 2344566677777777788888
Q ss_pred EEccc
Q 006956 130 VAGCV 134 (624)
Q Consensus 130 VgGc~ 134 (624)
+-||-
T Consensus 192 ILgCT 196 (229)
T TIGR00035 192 ILGCT 196 (229)
T ss_pred EEeCc
Confidence 88993
No 317
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=26.29 E-value=5.5e+02 Score=26.60 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~ 253 (624)
-+++.|+|++.+....+.|-.-+.|.+.|...||.
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA 91 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGA 91 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHH
Confidence 46789999999999999998888999999999964
No 318
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=26.18 E-value=7.3e+02 Score=26.28 Aligned_cols=105 Identities=14% Similarity=0.301 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeec-------CCcchhHHHH
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~-------~p~~i~~~l~ 293 (624)
.+++++++.++..-+.|+..+|+.+ +.+.+ +...++..+.... .++++++. +|..+.+...
T Consensus 9 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~------~~~~~la~~a~~T-----~ri~lgt~v~~~~~r~P~~~A~~~a 76 (325)
T TIGR03555 9 DPITKIAYYVKLAEDNGFEYAWITD-HYNNR------NVYSTLTLLALNT-----NTIKLGPGVTNPYTRSPAITASAIA 76 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCcc------CHHHHHHHHHHhc-----CeeEEeeeeccCCCCCHHHHHHHHH
Confidence 4688888888887778999998765 43222 2345666666543 35666541 2322332222
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHh
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIEL 342 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~--t~e~~~e~I~~lr~~ 342 (624)
.|. .+.. -++.+|+=+|+......++... ..+.+.+.++.+++.
T Consensus 77 tLd-~ls~----GR~~lGlg~G~~~~~~~~G~~~~~~~~~~~E~v~iir~l 122 (325)
T TIGR03555 77 TLD-EISG----GRAVLGIGPGDKATFDAMGIEWVKPLTTIREAIEVIRQL 122 (325)
T ss_pred HHH-HHcC----CCEEEEecCCcHHHHHHcCCCcCchHHHHHHHHHHHHHH
Confidence 222 2222 2677888888877778776543 355667777777765
No 319
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=26.15 E-value=7.8e+02 Score=28.81 Aligned_cols=138 Identities=12% Similarity=0.170 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh-CCCC-----------------CCceEEE
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-LPPD-----------------GSTMLRI 280 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~-l~~~-----------------~~~~iri 280 (624)
..++.+.-++++..|.+.|..-|.++-++.-. ...+..+-+.|.+. .+.+ ....+|+
T Consensus 40 ~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~-----A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRI 114 (606)
T PRK00694 40 ATTDVDGTVRQICALQEWGCDIVRVTVQGLKE-----AQACEHIKERLIQQGISIPLVADIHFFPQAAMHVADFVDKVRI 114 (606)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCCCHHH-----HHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHHHhcCceEE
Confidence 36788999999999999998888877543211 11222222221110 1000 0123343
Q ss_pred eecCCcchh------------------------HHHHHHHHHHhCCCcceeccccCCCCC--HHHHHhhcCCCCH----H
Q 006956 281 GMTNPPFIL------------------------EHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTL----S 330 (624)
Q Consensus 281 ~~~~p~~i~------------------------~~l~el~~l~~~~~v~~~l~IGlQSgs--d~vLk~M~R~~t~----e 330 (624)
||..+. +.+..+.+..+..++ -+-||+-||| ++++.+.+ .+. +
T Consensus 115 ---NPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~--~IRIGvN~GSL~~~i~~~yG--~tpegmVe 187 (606)
T PRK00694 115 ---NPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGK--AMRIGVNHGSLSERVMQRYG--DTIEGMVY 187 (606)
T ss_pred ---CCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCC--CEEEecCCcCchHHHHHHhC--CCHHHHHH
Confidence 333332 233444444444443 5667777775 55555543 344 4
Q ss_pred HHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 006956 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 331 ~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 373 (624)
..++.++.+.+. |+ .||++-+-.-+....-+..+++.+
T Consensus 188 SAle~~~i~e~~--~f---~diviS~KsSnv~~mi~AyrlLa~ 225 (606)
T PRK00694 188 SALEYIEVCEKL--DY---RDVVFSMKSSNPKVMVAAYRQLAK 225 (606)
T ss_pred HHHHHHHHHHHC--CC---CcEEEEEEcCCHHHHHHHHHHHHH
Confidence 456666777776 65 466776666666666666665543
No 320
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.04 E-value=5.2e+02 Score=27.98 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.++++..++++...+.|++.|.+-.. +.+....-.+.++++.+.+. ....+++.. |-..-.+...++.+.+.
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~-----~~~~~~~di~~i~~vR~~~G--~~~~l~vDa-n~~~~~~~A~~~~~~l~ 213 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPW-----GPGVVRRDLKACLAVREAVG--PDMRLMHDG-AHWYSRADALRLGRALE 213 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC-----CchhHHHHHHHHHHHHHHhC--CCCeEEEEC-CCCcCHHHHHHHHHHhh
Confidence 37889999999999999999987421 11000123677888887664 455677652 32221222223333333
Q ss_pred CCCcceeccccCCCCCHHHHHhhc
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMN 324 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~ 324 (624)
.-+ ..++.=|+...+-..++.++
T Consensus 214 ~~~-l~~iEeP~~~~d~~~~~~l~ 236 (368)
T cd03329 214 ELG-FFWYEDPLREASISSYRWLA 236 (368)
T ss_pred hcC-CCeEeCCCCchhHHHHHHHH
Confidence 222 34555555544444444443
No 321
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.64 E-value=3.8e+02 Score=28.84 Aligned_cols=137 Identities=10% Similarity=0.101 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEe-ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 222 TVESLVGRVRTVIADGVKEVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
++++.+++++.+.++|++.+.+- |.+ +. ..-.+.++++.+.++ ....+++.. |...-.+...++.+.+.
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~------~~-~~d~~~v~air~~~g--~~~~l~vDa-N~~~~~~~A~~~~~~l~ 210 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYP------TA-DEDLAVVRSIRQAVG--DGVGLMVDY-NQSLTVPEAIERGQALD 210 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCC------Ch-HhHHHHHHHHHHhhC--CCCEEEEeC-CCCcCHHHHHHHHHHHH
Confidence 47888999999999999877652 211 10 112577888887764 456777763 33222222223333333
Q ss_pred CCCcceeccccCCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCCEEEEEEE-EcCCCCCHHHHHHHH
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGMQIATDII-CGFPGETDEDFNQTV 368 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~R~-----------~t~e~~~e~I~~lr~~~pgi~i~td~I-vGfPGETeedf~eTl 368 (624)
.-+ ..+|.=|+...+...++.+.+. ++..++.+.++. ...+ .+..++. +| ....+.+..
T Consensus 211 ~~~-i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~---~~~d-~i~~~~~~~G----Git~~~~ia 281 (355)
T cd03321 211 QEG-LTWIEEPTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA---GACD-LVMPDLMKIG----GVTGWLRAS 281 (355)
T ss_pred cCC-CCEEECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh---CCCC-eEecCHhhhC----CHHHHHHHH
Confidence 333 5788888988887777666553 344454444432 1001 1222221 12 245667778
Q ss_pred HHHHHcCCC
Q 006956 369 NLIKEYKFP 377 (624)
Q Consensus 369 ~fl~el~~~ 377 (624)
++++..++.
T Consensus 282 ~~A~~~gi~ 290 (355)
T cd03321 282 ALAEQAGIP 290 (355)
T ss_pred HHHHHcCCe
Confidence 888888764
No 322
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=25.28 E-value=2.7e+02 Score=25.10 Aligned_cols=60 Identities=7% Similarity=0.099 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEE-cCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccc
Q 006956 329 LSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 393 (624)
Q Consensus 329 ~e~~~e~I~~lr~~~pgi~i~td~Iv-GfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~ 393 (624)
.+.+.+..+.+++..|+..+.+.|+= +.| ++.+.++.+.+.+...+.+.+|...+|--..
T Consensus 17 ~~~~~~~~~~l~~~~~~~~v~~afle~~~P-----~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~ 77 (126)
T PRK00923 17 KEVVTKIAEKIKEKHPFYIVEVGFMEFNEP-----TIPEALKKLIGTGADKIIVVPVFLAHGVHTK 77 (126)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEchhhccCcccc
Confidence 35777778888887667667666663 444 6888889998999999999999998887543
No 323
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.19 E-value=8.2e+02 Score=28.75 Aligned_cols=148 Identities=15% Similarity=0.115 Sum_probs=82.6
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeec-CCcchhHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-NPPFILEHLKEIA 296 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~-~p~~i~~~l~el~ 296 (624)
++++|-+-|...++...++|+.-|.+.+ .++.. .++..-++.+++ .. ......+.|+ .|.+-.+.+.++.
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd-~lnd~-----~n~~~~i~~~k~-~G--~~~~~~i~yt~sp~~t~e~~~~~a 160 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFD-ALNDA-----RNLKVAIDAIKS-HK--KHAQGAICYTTSPVHTLDNFLELG 160 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcc-cCcch-----HHHHHHHHHHHH-cC--CEEEEEEEecCCCCCCHHHHHHHH
Confidence 4555555555568888899999888765 23322 345566666655 22 3445555554 5544445544444
Q ss_pred HHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCC
Q 006956 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 376 (624)
+.+...+ +..|. ++.|---.++.++.++++.+++.+ ++.+..+. ..|..--..+.-.+.+.+.
T Consensus 161 k~l~~~G-ad~I~----------IkDtaG~l~P~~v~~lv~alk~~~-~ipi~~H~-----Hnt~Gla~an~laAieaGa 223 (596)
T PRK14042 161 KKLAEMG-CDSIA----------IKDMAGLLTPTVTVELYAGLKQAT-GLPVHLHS-----HSTSGLASICHYEAVLAGC 223 (596)
T ss_pred HHHHHcC-CCEEE----------eCCcccCCCHHHHHHHHHHHHhhc-CCEEEEEe-----CCCCCcHHHHHHHHHHhCC
Confidence 4433322 33332 456665678899999999999875 34332221 2233223333334456677
Q ss_pred CeEEE--EEeeeCCCCc
Q 006956 377 PQVHI--SQFYPRPGTP 391 (624)
Q Consensus 377 ~~v~i--~~ysP~PGTp 391 (624)
+.+.. ..+.-.+|-|
T Consensus 224 d~iD~ai~glGg~tGn~ 240 (596)
T PRK14042 224 NHIDTAISSFSGGASHP 240 (596)
T ss_pred CEEEeccccccCCCCcH
Confidence 77665 4445555544
No 324
>PRK14017 galactonate dehydratase; Provisional
Probab=25.07 E-value=7.2e+02 Score=27.06 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEee-cCCCCCCCCc-cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006956 222 TVESLVGRVRTVIADGVKEVWLSS-EDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~g-~d~~~yg~d~-~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (624)
++++++++++.+.+.|++.+.+=. .....++.+. ...-.+.++++.+.++ ....+++. .|...-.+...++.+.+
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g--~~~~l~vD-aN~~w~~~~A~~~~~~l 200 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVG--PEIGIGVD-FHGRVHKPMAKVLAKEL 200 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhC--CCCeEEEE-CCCCCCHHHHHHHHHhh
Confidence 688999999999999999988732 1111111100 0112567777777664 45677777 34332222222333333
Q ss_pred hCCCcceeccccCCCCCHHHHHhhcC
Q 006956 300 RHPCVYSFLHVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 300 ~~~~v~~~l~IGlQSgsd~vLk~M~R 325 (624)
..-+ +.++.=|+...+-.-++.+++
T Consensus 201 ~~~~-~~~iEeP~~~~d~~~~~~L~~ 225 (382)
T PRK14017 201 EPYR-PMFIEEPVLPENAEALPEIAA 225 (382)
T ss_pred cccC-CCeEECCCCcCCHHHHHHHHh
Confidence 3333 567787887777666666654
No 325
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=25.01 E-value=1.8e+02 Score=25.39 Aligned_cols=69 Identities=9% Similarity=0.001 Sum_probs=43.6
Q ss_pred EEEeecccccchHHHHHHHHHHHhhCCC--CEEEEccccCcC--hhhhc-CCcc-EEEcCCchhHHHHHHHHHhc
Q 006956 99 WLINTCTVKSPSQSAMDTLIAKCKSAKK--PLVVAGCVPQGS--RDLKE-LEGV-SIVGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 99 viINTCtv~~~ae~~~~~~ir~~k~~~~--~VVVgGc~aq~~--~e~~~-~~~d-~VvG~~~~~~l~ell~~~~~ 167 (624)
|-..||.+-..+.+-...+.++++++|. .|+-+||+.-=. |-+.- .+.. .+.+.-..+.++++++....
T Consensus 5 Vc~gT~ciAaGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 5 VPRDAAALALGADEVAEAIEAEAAARGLAATIVRNGSRGMYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGAL 79 (92)
T ss_pred EeCChhhhhhCHHHHHHHHHHHHHHcCCeEEEEEecCceecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhh
Confidence 4456787776665444444456666764 677889987543 32322 2444 56777777888898887554
No 326
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=24.90 E-value=5.2e+02 Score=25.22 Aligned_cols=101 Identities=11% Similarity=0.202 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcce
Q 006956 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306 (624)
Q Consensus 227 v~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~ 306 (624)
++|+..+.+.| ..|.+.+. + . .+-++.+.+. . ....+. +.. .++.+.+.....+...
T Consensus 55 ~~Ea~~lr~~g-~~il~l~~-~--~--------~~~~~~~~~~-~----~~~~v~--s~~----~~~~l~~~~~~~~~~~ 111 (218)
T PF01168_consen 55 LEEAEELREAG-APILVLGP-I--P--------PEELEELVEY-N----IIPTVD--SLE----QLEALSKAAKKQGKPL 111 (218)
T ss_dssp HHHHHHHHHTT-SEEEEESE-S--T--------GGGHHHHHHT-T----EEEEE---SHH----HHHHHHHHHHHHTSTE
T ss_pred HHHhhhHHhcC-CceEEEcC-C--C--------hhhHHHHhhC-c----EEEEEc--hhh----HHHHHHHHHHHcCCce
Confidence 67788898999 88877764 1 1 1222333221 1 122222 222 2233444433222245
Q ss_pred eccccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEEE-EEEEcCCC
Q 006956 307 FLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIAT-DIICGFPG 358 (624)
Q Consensus 307 ~l~IGlQSgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~i~t-d~IvGfPG 358 (624)
.+||-+.+|- +| |...+++.++++.+++. |++.+.. .-.+|...
T Consensus 112 ~v~l~vdtG~-------~R~G~~~~~~~~l~~~i~~~-~~l~l~Gl~th~~~~d 157 (218)
T PF01168_consen 112 KVHLKVDTGM-------GRLGVRPEELEELAEAIKAL-PNLRLEGLMTHFAHAD 157 (218)
T ss_dssp EEEEEBESSS-------SSSSBECHHHHHHHHHHHHT-TTEEEEEEEEBGSSTT
T ss_pred EEEEeecccc-------cccCCCHHHHHHHHHHHhcC-CCceEeeEeccccccC
Confidence 7888888884 45 45669999999999987 8877643 33444443
No 327
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=24.84 E-value=5.7e+02 Score=26.23 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 006956 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 406 (624)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~~~~R 406 (624)
.+.+++.+.++.+.... ++.+..|+=-|| |.+...+.+|++.+.+.+..-+++--- +-|. ..-+-+|.++..+|
T Consensus 52 lt~~e~~~~~~~I~~~~-~iPv~vD~d~Gy-G~~~~~v~~tv~~~~~aG~agi~IEDq--~~~~--~~~~l~~~ee~~~k 125 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV-SIPVIVDADTGY-GNDPENVARTVRELERAGAAGINIEDQ--RCGH--GGKQLVSPEEMVAK 125 (238)
T ss_dssp S-HHHHHHHHHHHHHHS-SSEEEEE-TTTS-SSSHHHHHHHHHHHHHCT-SEEEEESB--STTT--STT-B--HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh-cCcEEEEccccc-CchhHHHHHHHHHHHHcCCcEEEeecc--ccCC--CCCceeCHHHHHHH
Confidence 48899999999999875 799999999999 889999999999999999998888655 3231 11123678888777
Q ss_pred HHHHHHHHH
Q 006956 407 SRELTSVFE 415 (624)
Q Consensus 407 ~~~L~~l~~ 415 (624)
.+...+...
T Consensus 126 I~Aa~~a~~ 134 (238)
T PF13714_consen 126 IRAAVDARR 134 (238)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcc
Confidence 666665554
No 328
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.76 E-value=3.2e+02 Score=26.17 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=47.0
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeC-------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~-------~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-V 130 (624)
++|++. ||..+..=.+++...|...|..+.. ...+-|++++=| +.... ..+.+.++.+++.|.+|| +
T Consensus 34 ~~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS--~sG~t-~~~i~~~~~ak~~g~~iI~I 108 (179)
T cd05005 34 KRIFVY--GAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAIS--GSGET-SSVVNAAEKAKKAGAKVVLI 108 (179)
T ss_pred CeEEEE--ecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEc--CCCCc-HHHHHHHHHHHHCCCeEEEE
Confidence 566665 5556677778888888877865432 123457777633 33333 356778899999998755 7
Q ss_pred EccccC
Q 006956 131 AGCVPQ 136 (624)
Q Consensus 131 gGc~aq 136 (624)
++....
T Consensus 109 T~~~~s 114 (179)
T cd05005 109 TSNPDS 114 (179)
T ss_pred ECCCCC
Confidence 776544
No 329
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=24.40 E-value=7.1e+02 Score=24.72 Aligned_cols=134 Identities=10% Similarity=0.123 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006956 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (624)
Q Consensus 225 ~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 304 (624)
+.++-++.+.+.|++++++++.+-..-|.. .-.++++++.+... .++.++ -.... .+++..++..+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~---~~~~~i~~i~~~~~----~pi~~g-gGI~~----~ed~~~~~~~G-- 94 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGP---VNLPVIKKIVRETG----VPVQVG-GGIRS----LEDVEKLLDLG-- 94 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCC---CcHHHHHHHHHhcC----CCEEEe-CCcCC----HHHHHHHHHcC--
Confidence 334445556678999999987665433432 22577888876532 233332 11111 12233333322
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCCCCHHHHHHHHHHHHHcCCCe
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC------GFPGETDEDFNQTVNLIKEYKFPQ 378 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~Iv------GfPGETeedf~eTl~fl~el~~~~ 378 (624)
+..+-+|-.... +.+.+.++++.+... .+.+..|+-- |.-..+..+..+.++.+.+.+++.
T Consensus 95 a~~vvlgs~~l~-----------d~~~~~~~~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ 161 (230)
T TIGR00007 95 VDRVIIGTAAVE-----------NPDLVKELLKEYGPE--RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEG 161 (230)
T ss_pred CCEEEEChHHhh-----------CHHHHHHHHHHhCCC--cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCE
Confidence 344444432221 234455555554311 3556666442 222222345566777788889888
Q ss_pred EEEEEee
Q 006956 379 VHISQFY 385 (624)
Q Consensus 379 v~i~~ys 385 (624)
+.+...+
T Consensus 162 ii~~~~~ 168 (230)
T TIGR00007 162 IIYTDIS 168 (230)
T ss_pred EEEEeec
Confidence 8776554
No 330
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=24.33 E-value=7e+02 Score=28.16 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.+++.+++-++.+.+.|+..|.|-| ..+. . .+....+|++++++.++ ..+.+. +|-+.=.. +....+.+.
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D-t~G~-l--~P~~v~~lv~alk~~~~----~pi~~H-~Hnt~GlA-~AN~laAie 220 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD-MAGI-L--TPYVAYELVKRIKEAVT----VPLEVH-THATSGIA-EMTYLKAIE 220 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC-CCCC-C--CHHHHHHHHHHHHHhcC----CeEEEE-ecCCCCcH-HHHHHHHHH
Confidence 5889999999999999999999874 2322 2 23467889999987652 334444 22211111 111222222
Q ss_pred CCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~ 342 (624)
.+ +..++..+- -|..+...-....++..++..
T Consensus 221 -aG-ad~vD~sv~--------glg~gaGN~~tE~lv~~L~~~ 252 (448)
T PRK12331 221 -AG-ADIIDTAIS--------PFAGGTSQPATESMVAALQDL 252 (448)
T ss_pred -cC-CCEEEeecc--------ccCCCcCCHhHHHHHHHHHhc
Confidence 22 667776555 344444444455555555544
No 331
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=24.26 E-value=2.5e+02 Score=28.90 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=47.2
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhC
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l 270 (624)
+.++|+..--|||+. | ...|+.+.+-.+.|++.|.-||.|.| .++ .| ....+.++|+.+.+..
T Consensus 149 ~vRGYVScvvGCPye----------G---~v~P~kVa~V~k~ly~mGCyEiSLGD-TIG-vG--Tpgtm~~ML~~Vmk~v 211 (316)
T KOG2368|consen 149 RVRGYVSCVVGCPYE----------G---AVQPSKVAEVVKKLYEMGCYEISLGD-TIG-VG--TPGTMKRMLDAVMKVV 211 (316)
T ss_pred ccceEEEEEecCCcc----------C---CcCHHHHHHHHHHHHhCCcEEEeccc-ccc-cC--CchhHHHHHHHHHHhC
Confidence 456799999999874 2 34678888888999999999999853 332 23 2346788888887776
Q ss_pred C
Q 006956 271 P 271 (624)
Q Consensus 271 ~ 271 (624)
|
T Consensus 212 P 212 (316)
T KOG2368|consen 212 P 212 (316)
T ss_pred C
Confidence 5
No 332
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=24.01 E-value=6.5e+02 Score=26.73 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHCCCcEEEE-eecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC-
Q 006956 224 ESLVGRVRTVIADGVKEVWL-SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH- 301 (624)
Q Consensus 224 e~Iv~EI~~L~~~GvkeI~l-~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~- 301 (624)
++++++++.+.+.|++.+-+ +|.+. . ..-.+.++++.+.++ ....+++. .|...-.+....+.+.+..
T Consensus 120 ~~~~~~a~~~~~~G~~~~KvKvG~~~----~---~~d~~~v~air~~~g--~~~~l~vD-aN~~w~~~~A~~~~~~l~~l 189 (320)
T PRK02714 120 EAALQQWQTLWQQGYRTFKWKIGVDP----L---EQELKIFEQLLERLP--AGAKLRLD-ANGGLSLEEAKRWLQLCDRR 189 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCC----h---HHHHHHHHHHHHhcC--CCCEEEEE-CCCCCCHHHHHHHHHHHhhc
Confidence 67889999999999998876 43210 0 112567788887764 46678887 3433222222233333332
Q ss_pred -CCcceeccccCCCCCHHHHHhhcC
Q 006956 302 -PCVYSFLHVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 302 -~~v~~~l~IGlQSgsd~vLk~M~R 325 (624)
+.-..++.=|+...+.+-++.+++
T Consensus 190 ~~~~i~~iEqP~~~~~~~~~~~l~~ 214 (320)
T PRK02714 190 LSGKIEFIEQPLPPDQFDEMLQLSQ 214 (320)
T ss_pred cCCCccEEECCCCcccHHHHHHHHH
Confidence 111567888887777777766655
No 333
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=23.88 E-value=1.1e+02 Score=35.34 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=33.4
Q ss_pred CcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcC
Q 006956 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (624)
Q Consensus 96 ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~ 138 (624)
+-+|.+-.|.=...-.+.++.+++.+.++|--||++||+|-..
T Consensus 500 PGIia~vgC~nyp~g~k~v~~iaeefl~RnyiVvttGC~Am~i 542 (772)
T COG1152 500 PGIIAVIGCPNYPAGTKDVYKIAEEFLKRNYIVVTTGCIAMDI 542 (772)
T ss_pred CeEEEEecCCCCCcchhhHHHHHHHHHHcCeEEEecchhhhhc
Confidence 4456666888555556789999999999988899999998654
No 334
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.74 E-value=3.3e+02 Score=28.43 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=39.1
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
|.++.|..-..+....=.+.+...|++.|+++..+..++|++++= -.+..+...++++..
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~l------GGDGT~L~a~~~~~~ 61 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSI------GGDGTFLQAVRKTGF 61 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEE------CCcHHHHHHHHHhcc
Confidence 456777766666333334557777889999988766778988772 234556666666543
No 335
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=23.61 E-value=1.7e+02 Score=31.46 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-------CCHHHHHHHHHHhCC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELP 271 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-------~~l~eLL~~l~~~l~ 271 (624)
..+++.++++++.+.+.|++.|.|.|.-........+ .-+..-++.|++.+|
T Consensus 53 r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p 111 (324)
T PF00490_consen 53 RYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFP 111 (324)
T ss_dssp EEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHST
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCC
Confidence 4589999999999999999999998862222211111 235778888888876
No 336
>PRK01076 L-rhamnose isomerase; Provisional
Probab=23.51 E-value=4.3e+02 Score=29.42 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=68.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCC-------CHHHHHHHHHHHHHcC--CCeEEEEEeeeCCCCc
Q 006956 322 AMNREYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE-------TDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTP 391 (624)
Q Consensus 322 ~M~R~~t~e~~~e~I~~lr~~~pgi-~i~td~IvGfPGE-------Teedf~eTl~fl~el~--~~~v~i~~ysP~PGTp 391 (624)
.-++.-+.++.++=+..+.+..||- .++.+++....|+ .+++|...++++++.+ ++ ++-+.|+- |--.
T Consensus 65 ypG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak~~GlglD-fNpn~Fsh-~~~k 142 (419)
T PRK01076 65 YPGKARNADELRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGLGLD-FNPTCFSH-PLSA 142 (419)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-cCcccCCC-cccc
Confidence 5677889999999999999999984 6888888885443 5699999999999975 45 55555532 1111
Q ss_pred c-ccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCcEE--EEEE
Q 006956 392 A-ARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVE--RIWI 432 (624)
Q Consensus 392 a-~~~~~vp~~~~~~R~~~L~~l~~~~~~~~~~vG~~~--~VLv 432 (624)
. +.+...++++.+...+-..+-.+-.+...+.+|... .+|+
T Consensus 143 ~G~SLs~pD~~iR~fwI~H~~~c~~I~~~~g~~lGs~~~~niWi 186 (419)
T PRK01076 143 DGFTLSHPDPEIRQFWIEHCKASRRISAYFGEELGTPCVMNIWI 186 (419)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeEEe
Confidence 1 123344555544443333322222233445677764 6666
No 337
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=23.32 E-value=4.1e+02 Score=29.57 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=45.1
Q ss_pred CCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 314 SGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 314 Sgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pg-i~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
..|++-++.+++ +...+.+.+++++++++ + -.|..|++..+|.+ +.-++..+.+.+.
T Consensus 66 ~IDe~dl~~~g~wp~pr~~~A~Ll~kL~a~--qp~aIgLDi~r~~P~~--~~~~~La~~~~~~ 124 (400)
T COG4252 66 AIDEQDLESLGQWPWPRAALARLLDKLAAA--QPRAIGLDIYRDLPSS--PGDRALAAVLQRA 124 (400)
T ss_pred EecHHHHHhcCCCCCCHHHHHHHHHHHHhc--CCcEEEEEEeecCCCC--cccHHHHHHhccC
Confidence 568888999998 78999999999999999 6 36889999999986 3334455555544
No 338
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=23.27 E-value=7.5e+02 Score=26.01 Aligned_cols=108 Identities=9% Similarity=0.022 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeec-------CCcchhHHHHHH
Q 006956 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLKEI 295 (624)
Q Consensus 223 ~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~-------~p~~i~~~l~el 295 (624)
.+++++.++..-+.|+..+++....+..|+. ..+-.-+|..+.... .+|++++. +|-.+.+... .
T Consensus 21 ~~~~~~~a~~Ae~lGfd~~w~~Ehh~~~~~~--~~~p~~~la~lA~~T-----~rI~lgt~v~~~~~~~P~~~Ae~~a-t 92 (315)
T cd01096 21 LDRMVDTGVLVDKLNFDTALVLEHHFSENGI--VGAPLTAAAFLLGLT-----ERLNVGSLNQVITTHHPVRIAEEAL-L 92 (315)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccCCCCC--CCCHHHHHHHHHHhc-----CEeEeeeeeeccCccCHHHHHHHHH-H
Confidence 4555666666556799999987655555532 124456677776643 46666642 3433333332 2
Q ss_pred HHHHhCCCcceeccccCCCCCHH-HHHhhcCCC--CHHHHHHHHHHHHHh
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIEL 342 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~-vLk~M~R~~--t~e~~~e~I~~lr~~ 342 (624)
.+.+.. -++.+|+=+|... ....++..+ ..+.+.+.++.+++.
T Consensus 93 LD~lS~----GR~~lGvg~G~~~~e~~~~G~~~~~~~~~~~E~l~~l~~l 138 (315)
T cd01096 93 LDQMSK----GRFILGFSDCLYDKDMRFFGRPMESQRQLFEACYEIINDA 138 (315)
T ss_pred HHHHcC----CCeEEEeeCCCCHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 222322 2677888777543 467777664 334466666666665
No 339
>PRK13753 dihydropteroate synthase; Provisional
Probab=23.25 E-value=9e+02 Score=25.54 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=39.6
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-c--C---CHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-G--V---NLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~-~--~---~l~eLL~~l~~~l~~~~~~~iri~~~~p~ 286 (624)
-+..+++.+++.++++.+.|+.-|.+.|+.+.. |.+. . + ++...++.+.+. ...+.+.+.+|.
T Consensus 19 g~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrP-ga~~vs~eeE~~Rv~pvI~~l~~~-----~~~ISIDT~~~~ 87 (279)
T PRK13753 19 SRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHP-DARPVSPADEIRRIAPLLDALSDQ-----MHRVSIDSFQPE 87 (279)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCcCCHHHHHHHHHHHHHHHHhC-----CCcEEEECCCHH
Confidence 344689999999999999999988887765433 2221 1 1 333555555431 235666655554
No 340
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=23.17 E-value=9.8e+02 Score=28.04 Aligned_cols=124 Identities=11% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.+++.+++-++.+.+.|+..|.|-|- . |.-.+..+.+|++++++.++ ..+.+. +|-+.=.. +....+.+.
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt-~---G~~~P~~~~~lv~~lk~~~~----~pi~~H-~Hnt~Gla-~An~laAv~ 220 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDM-A---GLLTPYAAYELVKALKEEVD----LPVQLH-SHCTSGLA-PMTYLKAVE 220 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCc-C---CCcCHHHHHHHHHHHHHhCC----CeEEEE-EcCCCCcH-HHHHHHHHH
Confidence 47999999999999999999998752 2 22223567889999987653 234444 22211111 111222222
Q ss_pred CCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
++ +.+++..+- -|..+........++..++.. |.. ++-+.+.+.+.-++++++.
T Consensus 221 -aG-ad~vD~ai~--------g~g~~agn~~~e~vv~~L~~~--g~~---------~~idl~~l~~~s~~~~~~~ 274 (592)
T PRK09282 221 -AG-VDIIDTAIS--------PLAFGTSQPPTESMVAALKGT--PYD---------TGLDLELLFEIAEYFREVR 274 (592)
T ss_pred -hC-CCEEEeecc--------ccCCCcCCHhHHHHHHHHHhC--CCC---------CccCHHHHHHHHHHHHHHH
Confidence 22 677776665 355555444555556666544 332 2445666777777776664
No 341
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=23.14 E-value=7.2e+02 Score=25.94 Aligned_cols=138 Identities=17% Similarity=0.094 Sum_probs=66.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--cCCHHHHHHHHHHhCCCCCCceEEEeecCCc--chhHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP--FILEHLK 293 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~--~i~~~l~ 293 (624)
.-...+++|++++....+.|..-+.+-.-|.. -|... ...+.+.++.|.+..+ ..-+.+++-... ...+.+.
T Consensus 20 ~lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~-~G~~s~d~~~~~e~~~~IR~~~p---d~iv~~Ttg~~~~~~~~~R~~ 95 (272)
T PF05853_consen 20 ALPITPEEIAADAVACYEAGAAIVHIHARDDE-DGRPSLDPELYAEVVEAIRAACP---DLIVQPTTGGGGGPDPEERLA 95 (272)
T ss_dssp TS--SHHHHHHHHHHHHHHTESEEEE-EE-TT-TS-EE--HHHHHHHHHHHHHHST---TSEEEEESSTTTTSGHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecCCCC-CCCcCCCHHHHHHHHHHHHHHCC---CeEEEeCCCCCCCCCHHHHHH
Confidence 34567999999999999999988887654111 13221 1357888888887643 334444422211 1222222
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 373 (624)
-+..+ .+. +-.+.+|-=.++ -..+-=.++.+.+.+.++.++++ |+.+. +.+= +..++.....++++
T Consensus 96 ~v~~~--~pd-~asl~~gs~n~~---~~~~~~~n~~~~~~~~~~~~~e~--Gi~pe--~ev~----d~~~l~~~~~l~~~ 161 (272)
T PF05853_consen 96 HVEAW--KPD-MASLNPGSMNFG---TRDRVYINTPADARELARRMRER--GIKPE--IEVF----DPGHLRNARRLIEK 161 (272)
T ss_dssp HHHHH----S-EEEEE-S-EEES---GGCSEE---HHHHHHHHHHHHHT--T-EEE--EEES----SHHHHHHHHHHHHT
T ss_pred HHHhc--CCC-eEEecccccccc---cCCceecCCHHHHHHHHHHHHHc--CCeEE--EEEE----cHHHHHHHHHHHHC
Confidence 22222 232 223332211111 00011124677788888888888 76663 3332 34556666565555
No 342
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.12 E-value=2.3e+02 Score=25.94 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEEEEEcC-------CCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCC
Q 006956 331 DFRTVVDTLIELVPGMQIATDIICGF-------PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 390 (624)
Q Consensus 331 ~~~e~I~~lr~~~pgi~i~td~IvGf-------PGETeedf~eTl~fl~el~~~~v~i~~ysP~PGT 390 (624)
.+....+.+++.+|+..+..-|+-.. .|....++.+.++-+.+.+..++-+.++...||-
T Consensus 18 ~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~ 84 (127)
T cd03412 18 TIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIPGE 84 (127)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcH
Confidence 34445555555556555554444200 0112234455566666666666666666666663
No 343
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=22.90 E-value=8.3e+02 Score=25.85 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=76.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 296 (624)
.+-++.+.+++|++.....|++.++|- .++|..... ..+..+.+.|.+.+.. ....+.
T Consensus 81 ~~ekS~~~l~~e~~r~~~lG~~~lv~H---pG~~~~~~~e~~l~~i~~~Ln~~~~~-~~v~i~----------------- 139 (280)
T COG0648 81 KVEKSIERLIDEIDRCEQLGAKLLVFH---PGSYLGQGKEEGLNRIAEALNELLEE-EGVIIL----------------- 139 (280)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEC---CccccCCCHHHHHHHHHHHHHHHhhc-cCCeEE-----------------
Confidence 467789999999999999999999885 466655421 2233333333332210 001111
Q ss_pred HHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC-CEEEEEEE----EcCCCCCHHHHHHHHHHH
Q 006956 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-MQIATDII----CGFPGETDEDFNQTVNLI 371 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pg-i~i~td~I----vGfPGETeedf~eTl~fl 371 (624)
++... -+-++++.+.+++.+.++.+.+. . +.+..|+- .|+.--|+++|++.++.+
T Consensus 140 ---------------~e~~a---gegs~~g~~F~~L~eii~~~~~~--~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~ 199 (280)
T COG0648 140 ---------------LENTA---GEGSGKGTQFGELAEIIDLIEEK--ERIGVCIDTCHAFAAGYDIITEEDFEKVLNEF 199 (280)
T ss_pred ---------------EEEec---cccCccccchhhHHHHHHhhccc--CceEEEEEchhhhhccCCcCcHHHHHHHHHHH
Confidence 11111 12366788888999999988887 4 66666653 355556668999999877
Q ss_pred HH-cCCCeEEEE
Q 006956 372 KE-YKFPQVHIS 382 (624)
Q Consensus 372 ~e-l~~~~v~i~ 382 (624)
.+ ++++++...
T Consensus 200 d~~~G~~~~~~~ 211 (280)
T COG0648 200 DKVLGLEYLKHI 211 (280)
T ss_pred HHHhChhhheeE
Confidence 65 566444333
No 344
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=22.82 E-value=80 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=17.2
Q ss_pred EEEeeeCCCCccccC-CCCCHHH
Q 006956 381 ISQFYPRPGTPAARM-KKVPSAV 402 (624)
Q Consensus 381 i~~ysP~PGTpa~~~-~~vp~~~ 402 (624)
+..|.|.||||+.+. +.++.++
T Consensus 2 in~l~P~~gTp~~~~~~~~~~~~ 24 (94)
T smart00876 2 INRLRPIEGTPLEDPPPPVSPEE 24 (94)
T ss_pred CCccccCCCCCcccCCCCCCHHH
Confidence 457899999999887 5677654
No 345
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.78 E-value=1.1e+03 Score=26.40 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=52.4
Q ss_pred CCcEEEEeecCCCCC-CCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCC
Q 006956 237 GVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315 (624)
Q Consensus 237 GvkeI~l~g~d~~~y-g~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSg 315 (624)
+++.|.+.. .+..+ +.... .++++.|.+. +..|+-+.+-+|..+++...+..+.+..++ +.++.||.
T Consensus 186 hV~~IRI~T-R~pvv~P~RIT---~ell~~Lk~~----~~~~v~~h~nhp~Eit~~a~~Al~~L~~aG----I~l~nQsV 253 (417)
T TIGR03820 186 HVEVIRIGT-RVPVVLPQRIT---DELVAILKKH----HPVWLNTHFNHPREITASSKKALAKLADAG----IPLGNQSV 253 (417)
T ss_pred CCceEEEee-ccccccccccC---HHHHHHHHhc----CCeEEEEeCCChHhChHHHHHHHHHHHHcC----CEEEeece
Confidence 566666643 33332 21111 4677766552 345777776688877765544444444443 34566664
Q ss_pred CHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEE
Q 006956 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (624)
Q Consensus 316 sd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~ 349 (624)
+|+-+| -+.+-+.++.+.+.+. |+...
T Consensus 254 ---LLkGVN--D~~~~l~~L~~~L~~~--gV~PY 280 (417)
T TIGR03820 254 ---LLAGVN--DCPRIMKKLVHKLVAN--RVRPY 280 (417)
T ss_pred ---EECCcC--CCHHHHHHHHHHHHHC--CCeec
Confidence 123222 3677788888888887 76543
No 346
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=22.65 E-value=3.8e+02 Score=26.68 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=38.4
Q ss_pred eeccccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH----HHHHHHHHHHc
Q 006956 306 SFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED----FNQTVNLIKEY 374 (624)
Q Consensus 306 ~~l~IGlQSgsd~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeed----f~eTl~fl~el 374 (624)
..+||-+.+|.. |+| |.+.+++.+.++.+.+. |++.+..-+..+-..++.+. ++..++++.++
T Consensus 117 ~~v~lkvdtG~~-----~~R~G~~~~~~~~~~~~i~~~-~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l 184 (222)
T cd00635 117 LDVLVQVNIGGE-----ESKSGVAPEELEELLEEIAAL-PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDEL 184 (222)
T ss_pred CcEEEEEecCCC-----CCCCCCCHHHHHHHHHHHHcC-CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHH
Confidence 457788888722 577 57888888888888664 67765543334333444455 44445555444
No 347
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=22.38 E-value=3.4e+02 Score=29.24 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=39.5
Q ss_pred CccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC----CCC---ccCCHHHHHHHHHHhCC
Q 006956 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY----GRD---IGVNLPILLNAIVAELP 271 (624)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~y----g~d---~~~~l~eLL~~l~~~l~ 271 (624)
+...|-+ ..+++.+++|++.+.+.|++.|.|.|...... |.+ ...-+..-++.+++.+|
T Consensus 43 ~smPg~~-r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p 108 (320)
T cd04823 43 PSMPGVF-RLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFP 108 (320)
T ss_pred CCCCCce-eeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCC
Confidence 3444444 45899999999999999999999998621111 111 01235677888887665
No 348
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.29 E-value=48 Score=36.82 Aligned_cols=17 Identities=35% Similarity=0.923 Sum_probs=14.5
Q ss_pred CCCCCCCCCCcccCccC
Q 006956 199 NVGCLGACTYCKTKHAR 215 (624)
Q Consensus 199 srGCp~~CsFC~ip~~r 215 (624)
+.|||.+|.||..|...
T Consensus 6 ~~gC~~~C~wC~~p~~~ 22 (404)
T TIGR03278 6 GIDCRGFCRYCYFKKVD 22 (404)
T ss_pred CCCCCCcCCCCCCCCCC
Confidence 46999999999998753
No 349
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=22.23 E-value=2.5e+02 Score=28.93 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 006956 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (624)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i 381 (624)
.+.+++...++.+.+..|...+..|+=.|+ |++.++..+++.-+.+.+.+-+++
T Consensus 55 vtl~em~~~~~~I~r~~~~~pviaD~~~G~-g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPLALIVADLPFGA-YGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-CcCHHHHHHHHHHHHHcCCcEEEE
Confidence 588999999999998877677888988888 557777777777777788877776
No 350
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.08 E-value=6.7e+02 Score=23.60 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCC-CceEEEeecCCc--c-hhHHHHHHHH
Q 006956 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPP--F-ILEHLKEIAE 297 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~-~~~iri~~~~p~--~-i~~~l~el~~ 297 (624)
+.+.+.+-++.+.+.|+.-|.+.+ ++++.+.+... + ...+-.+...+. . ..+..+....
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~--~~~~~v~~~v~~~~~~~~~~~~~~~a~~ 73 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALA--GSDVPVIVVVGFPTGLTTTEVKVAEVEE 73 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhC--CCCCeEEEEecCCCCCCcHHHHHHHHHH
Confidence 678888889999999999888765 44555554443 2 222223222221 0 2222222222
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC-CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCC
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~-pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 376 (624)
..+. + +..+.+.. +- .-.. ..+.+...+.++.+.+.. +++.+..+.+.+.. -+.+...+..+.+.+.++
T Consensus 74 a~~~-G-ad~i~v~~----~~-~~~~--~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 74 AIDL-G-ADEIDVVI----NI-GSLK--EGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHc-C-CCEEEEec----cH-HHHh--CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHHHHhCC
Confidence 2222 2 23332211 00 0000 013566667677776654 46777777765543 356677777777777888
Q ss_pred CeEEEE
Q 006956 377 PQVHIS 382 (624)
Q Consensus 377 ~~v~i~ 382 (624)
+.+..+
T Consensus 144 ~~iK~~ 149 (201)
T cd00945 144 DFIKTS 149 (201)
T ss_pred CEEEeC
Confidence 776644
No 351
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=21.83 E-value=5.6e+02 Score=25.87 Aligned_cols=134 Identities=14% Similarity=0.194 Sum_probs=77.1
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEE--eecCCCCCCCC--ccCCHHHHHHHHHHh-CCCCCCceEEEeecCCcchhHHHHH
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRD--IGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKE 294 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l--~g~d~~~yg~d--~~~~l~eLL~~l~~~-l~~~~~~~iri~~~~p~~i~~~l~e 294 (624)
+.+.-.+-+|++.+.+.|+..+.+ .|.+| -.. ++ +++++.+++. .. -...+.+...+|....+ .
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~F---vpn~tfg---~~~i~~i~~~~~~--~~~dvHLMv~~p~~~i~---~ 76 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVHFDVMDNHY---VPNLTFG---APICKALRDYGIT--APIDVHLMVKPVDRIIP---D 76 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCcc---cCccccC---HHHHHHHHHhCCC--CCEEEEeccCCHHHHHH---H
Confidence 445678889999999989877654 44333 111 12 5677777653 12 22456665556643322 2
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+.+ .+ ...+.+-+|+. .+..+.++.+|+. |+.. .+-+. |+-..+.++.. +..+
T Consensus 77 ~~~----~g-ad~i~~H~Ea~--------------~~~~~~l~~ik~~--g~k~--Glaln-P~Tp~~~i~~~---l~~~ 129 (220)
T PRK08883 77 FAK----AG-ASMITFHVEAS--------------EHVDRTLQLIKEH--GCQA--GVVLN-PATPLHHLEYI---MDKV 129 (220)
T ss_pred HHH----hC-CCEEEEcccCc--------------ccHHHHHHHHHHc--CCcE--EEEeC-CCCCHHHHHHH---HHhC
Confidence 222 22 56777777763 2356678889998 7665 34443 66555555433 3333
Q ss_pred CCCeEEEEEeeeCCCCccccC
Q 006956 375 KFPQVHISQFYPRPGTPAARM 395 (624)
Q Consensus 375 ~~~~v~i~~ysP~PGTpa~~~ 395 (624)
|.+ -.++..||+.-..+
T Consensus 130 --D~v--lvMtV~PGfgGq~f 146 (220)
T PRK08883 130 --DLI--LLMSVNPGFGGQSF 146 (220)
T ss_pred --CeE--EEEEecCCCCCcee
Confidence 433 34677888875443
No 352
>PRK15452 putative protease; Provisional
Probab=21.78 E-value=1.1e+03 Score=26.43 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCC
Q 006956 227 VGRVRTVIADGVKEVWLSSEDTGA 250 (624)
Q Consensus 227 v~EI~~L~~~GvkeI~l~g~d~~~ 250 (624)
++.++.+++.|+..|++.++.++.
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~ 36 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSL 36 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccch
Confidence 455667778899999987665543
No 353
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.74 E-value=1e+03 Score=26.14 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEe-ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (624)
.++++.+++++.+.+.|++.+.+- |. .+. ..-.+.++++.+.+. ....+++. .|-..-.+....+.+.+
T Consensus 159 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~------~~~-~~di~~v~avRe~~G--~~~~l~vD-aN~~w~~~~A~~~~~~l 228 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIKIGG------APL-DEDLRRIEAALDVLG--DGARLAVD-ANGRFDLETAIAYAKAL 228 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC------CCH-HHHHHHHHHHHHhcC--CCCeEEEE-CCCCCCHHHHHHHHHHh
Confidence 457889999999999999998872 21 110 112567778877664 45567776 34322222222333334
Q ss_pred hCCCcceeccccCCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHH--HhCCCCEEEEEEE-EcCCCCCHHHHH
Q 006956 300 RHPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLI--ELVPGMQIATDII-CGFPGETDEDFN 365 (624)
Q Consensus 300 ~~~~v~~~l~IGlQSgsd~vLk~M~R~-----------~t~e~~~e~I~~lr--~~~pgi~i~td~I-vGfPGETeedf~ 365 (624)
..-+ ..+|.=|+...+-+-++.+.+. ++..++.++++.=. ..+ -.+..|+. +| -.-.+.
T Consensus 229 ~~~~-~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~--div~~d~~~~G----Git~~~ 301 (385)
T cd03326 229 APYG-LRWYEEPGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDR--DVLQFDPGLSY----GLPEYL 301 (385)
T ss_pred hCcC-CCEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccC--CEEEeCchhhC----CHHHHH
Confidence 3333 4678878877777777777553 34445544443210 000 12334443 23 145667
Q ss_pred HHHHHHHHcCCC
Q 006956 366 QTVNLIKEYKFP 377 (624)
Q Consensus 366 eTl~fl~el~~~ 377 (624)
+..++++..++.
T Consensus 302 kia~lA~a~gi~ 313 (385)
T cd03326 302 RMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHcCCC
Confidence 777778887764
No 354
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=21.68 E-value=3.9e+02 Score=29.70 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=68.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCC-------CHHHHHHHHHHHHHcC--CCeEEEEEeeeCC
Q 006956 319 VLSAMNREYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE-------TDEDFNQTVNLIKEYK--FPQVHISQFYPRP 388 (624)
Q Consensus 319 vLk~M~R~~t~e~~~e~I~~lr~~~pgi-~i~td~IvGfPGE-------Teedf~eTl~fl~el~--~~~v~i~~ysP~P 388 (624)
+-..-+|.-+.++.++=+..+.+..||- .++.+++.+..++ .+++|...++++++.+ ++ ++-+.|+-
T Consensus 58 tgn~PG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~d~~vdrd~~~p~hf~~w~~~Ak~~glglD-fNpn~Fsh-- 134 (414)
T TIGR01748 58 TGNYPGKARTPSELRADLEKAMSLIPGKHRLNLHAIYLETDEPVSRDEIKPEHFKNWVEWAKANGLGLD-FNPTCFSH-- 134 (414)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-cCcccCCC--
Confidence 3445678889999999999999999984 6888999975442 6699999999999975 45 55555532
Q ss_pred CCcccc----CCCCCHHHHHHHHHHHHHHHHHhCccccCCCcEE--EEEE
Q 006956 389 GTPAAR----MKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVE--RIWI 432 (624)
Q Consensus 389 GTpa~~----~~~vp~~~~~~R~~~L~~l~~~~~~~~~~vG~~~--~VLv 432 (624)
|.++ +...++++.+...+-..+-.+-.+...+.+|... .+|+
T Consensus 135 --~~~k~G~SLshpD~~iR~fwI~H~~~c~~I~~~fg~~lGs~~l~niWi 182 (414)
T TIGR01748 135 --PLSADGFTLSHPDDSIRQFWIDHCKASRRISEYFGKELGTPSVMNIWI 182 (414)
T ss_pred --ccccCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchhheeec
Confidence 2222 2234455444433322222221233345566653 4555
No 355
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.59 E-value=1e+03 Score=25.54 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEE-eecCCCCCCCCc-cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006956 222 TVESLVGRVRTVIADGVKEVWL-SSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l-~g~d~~~yg~d~-~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (624)
+++++.++++.+.+.|++.+.+ +|........+. ...-.+.++++.+.+. ....+++. .|-..-.+...++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g--~~~~l~vD-aN~~~~~~~A~~~~~~l 199 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVG--PDIDIGVD-FHGRVSKPMAKDLAKEL 199 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhC--CCCEEEEE-CCCCCCHHHHHHHHHhc
Confidence 5788889999999999998887 332111110000 0112567788877664 45667776 33322222222333333
Q ss_pred hCCCcceeccccCCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCC-EEEEEEE-EcCCCCCHHHHHH
Q 006956 300 RHPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGM-QIATDII-CGFPGETDEDFNQ 366 (624)
Q Consensus 300 ~~~~v~~~l~IGlQSgsd~vLk~M~R~-----------~t~e~~~e~I~~lr~~~pgi-~i~td~I-vGfPGETeedf~e 366 (624)
...+ ..+|.=|+...+-..++.+.+. ++..++.+.++ .. .+ .+..|+. +| ......+
T Consensus 200 ~~~~-i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~---~~--~~d~v~~d~~~~G----Git~~~~ 269 (352)
T cd03325 200 EPYR-LLFIEEPVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLE---DG--AVDIIQPDISHAG----GITELKK 269 (352)
T ss_pred cccC-CcEEECCCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHH---hC--CCCEEecCccccC----CHHHHHH
Confidence 3333 5788888887777777766553 23444444432 22 12 1222321 12 2466778
Q ss_pred HHHHHHHcCCC
Q 006956 367 TVNLIKEYKFP 377 (624)
Q Consensus 367 Tl~fl~el~~~ 377 (624)
.++++++.++.
T Consensus 270 ~~~lA~~~gi~ 280 (352)
T cd03325 270 IAAMAEAYDVA 280 (352)
T ss_pred HHHHHHHcCCc
Confidence 88888888875
No 356
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=21.57 E-value=1.1e+02 Score=26.50 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=10.2
Q ss_pred EEeeeCCCCccccCCCCCHHHH
Q 006956 382 SQFYPRPGTPAARMKKVPSAVV 403 (624)
Q Consensus 382 ~~ysP~PGTpa~~~~~vp~~~~ 403 (624)
+.|.|.+|||+...+.+++++.
T Consensus 3 n~l~P~~Gtpl~~~~~l~~~e~ 24 (93)
T PF06968_consen 3 NFLRPIPGTPLEDPPPLSDEEF 24 (93)
T ss_dssp EE----TTSTTTTS----HHHH
T ss_pred eeEEeCCCCCCCCCCCCCHHHH
Confidence 4499999999977777777543
No 357
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=21.50 E-value=9.2e+02 Score=24.98 Aligned_cols=151 Identities=13% Similarity=0.197 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhH-------HHHHHH
Q 006956 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKEIA 296 (624)
Q Consensus 224 e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~-------~l~el~ 296 (624)
+.|-+.+..+.+.|..-|.+.|++..+|+ .++.+.+..+ ...-+.|. .|++.-.+ .--.+.
T Consensus 80 ~~i~~~v~~~~~~~~~pi~lGGdHsis~~---------~i~al~~~~~--~~~vI~~D-AH~D~~~~~~g~~~~~~~~~~ 147 (275)
T TIGR01230 80 EKIQEHAEEFLEEGKFPVAIGGEHSITLP---------VIRAMAKKFG--KFAVVHFD-AHTDLRDEFDGGTLNHACPMR 147 (275)
T ss_pred HHHHHHHHHHHhcCCeEEEecCcchhhHH---------HHHHHHHhcC--CeEEEEEe-cccccccccCCCccccHhHHH
Confidence 34444445556678877888777766653 4445544332 22334443 33332111 111123
Q ss_pred HHHhCCCcceeccccCCCCCHHHHHhhcCC----CCHHHHHHHHHHHHHhCC--CCEEEEE--EE--E-----cCC---C
Q 006956 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE----YTLSDFRTVVDTLIELVP--GMQIATD--II--C-----GFP---G 358 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~----~t~e~~~e~I~~lr~~~p--gi~i~td--~I--v-----GfP---G 358 (624)
.++..+ .+.+++|+++.++.-++.+++. ++ .++.+.++.+.+... .+.++.| .+ - |-| |
T Consensus 148 ~~~~~~--~~iv~iGiR~~~~~e~~~~~~~~~~~~~-~~i~~~~~~~l~~~~~~~vyis~DiDvlDps~aPg~~~p~pgG 224 (275)
T TIGR01230 148 RVIELG--LNVVQFGIRSGFKEENDFARENNIQVLK-REVDDVIAEVKQKVGDKPVYVTIDIDVLDPAFAPGTGTPEPGG 224 (275)
T ss_pred HHhhCC--CCEEEEEeCCCChHHHHHHHHcCCEEEe-hHHHHHHHHHHHHhCCCceEEEEeccccCcccCCCCCCCCCCC
Confidence 333322 3688999999887666554432 23 444333333322222 2444444 33 1 333 3
Q ss_pred CCHHHHHHHHHHH-HHcCCCeEEEEEeeeCCC
Q 006956 359 ETDEDFNQTVNLI-KEYKFPQVHISQFYPRPG 389 (624)
Q Consensus 359 ETeedf~eTl~fl-~el~~~~v~i~~ysP~PG 389 (624)
=|..++.+.+..+ +..++-.+.+.-|.|...
T Consensus 225 l~~~e~~~~~~~~~~~~~v~g~DivE~~P~~D 256 (275)
T TIGR01230 225 LTSDELINFFVRALKDDNVVGFDVVEVAPVYD 256 (275)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEEEEeCCCCC
Confidence 5667777755443 333555666777777643
No 358
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=21.39 E-value=7e+02 Score=26.84 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=49.0
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-------CCHHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLN 264 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-------~~l~eLL~ 264 (624)
++.+|-+..| ....=.++...|-+| .|++.+++|++.+.+.|++.|.|.|.-...+..+.+ .-+..-++
T Consensus 33 LI~PiFV~eg---~~~~~~I~SMPgv~r-~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr 108 (330)
T COG0113 33 LIYPIFVVEG---ENIKEEIPSMPGVYR-YSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVR 108 (330)
T ss_pred eeEeEEEecC---CCCccccCCCCCcee-ccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHH
Confidence 3444556566 333334556556555 479999999999999999999998853222222111 23567788
Q ss_pred HHHHhCC
Q 006956 265 AIVAELP 271 (624)
Q Consensus 265 ~l~~~l~ 271 (624)
.|++.++
T Consensus 109 ~ik~~~p 115 (330)
T COG0113 109 AIKEAFP 115 (330)
T ss_pred HHHHhCC
Confidence 8877664
No 359
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=21.37 E-value=3.5e+02 Score=29.12 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=38.8
Q ss_pred ccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-------CCHHHHHHHHHHhCC
Q 006956 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELP 271 (624)
Q Consensus 213 ~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-------~~l~eLL~~l~~~l~ 271 (624)
...|-+ ..+++.++++++.+.+.|++.|.|.|. .......+ .-+..-++.|++.+|
T Consensus 49 smPg~~-r~s~d~l~~~v~~~~~~Gi~av~LFgv--~~~Kd~~gs~A~~~~g~v~rair~iK~~~p 111 (323)
T PRK09283 49 SMPGVY-RLSIDLLVKEAEEAVELGIPAVALFGV--PELKDEDGSEAYNPDGLVQRAIRAIKKAFP 111 (323)
T ss_pred CCCCce-eeCHHHHHHHHHHHHHCCCCEEEEeCc--CCCCCcccccccCCCCHHHHHHHHHHHhCC
Confidence 333433 468999999999999999999999986 22211111 125677888877665
No 360
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=21.31 E-value=4.8e+02 Score=29.59 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcChhhh-cCCccEEEcCCchhHHHHHHHHHh
Q 006956 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETL 166 (624)
Q Consensus 93 ~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~e~~-~~~~d~VvG~~~~~~l~ell~~~~ 166 (624)
-.++|+|++.| ++..... .+..+++++.+|+ -.++...++. ......|-|...+.+--.+|...+
T Consensus 64 i~~~~~VV~s~-Ai~~~Np-----Ei~~A~e~~ipi~---~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl 129 (459)
T COG0773 64 ILDADVVVVSN-AIKEDNP-----EIVAALERGIPVI---SRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVL 129 (459)
T ss_pred cCCCceEEEec-ccCCCCH-----HHHHHHHcCCCeE---cHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHH
Confidence 34678888844 5553321 1445667777776 3344445532 224456888888876666665543
No 361
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=21.30 E-value=1.1e+02 Score=31.65 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=24.4
Q ss_pred CccChhHHHHH-HHHHHhcCceeeCCCCCCcEEEEe
Q 006956 68 CSHNQSDSEYM-AGQLSAFGYALTDNSEEADIWLIN 102 (624)
Q Consensus 68 C~~N~~Dse~~-~~~L~~~G~~~~~~~~~ADlviIN 102 (624)
|...++.+|.. ...|.... -.|.++++||+++|=
T Consensus 32 ~~~~~~~~e~~l~~~l~~s~-~~T~dp~eAdlF~vP 66 (302)
T PF03016_consen 32 YETSQYALEVILHEALLNSP-FRTDDPEEADLFFVP 66 (302)
T ss_pred cccccchHHHHHHHHHHhCC-cEeCCHHHCeEEEEE
Confidence 66667777654 45555544 578889999999984
No 362
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=21.27 E-value=3.9e+02 Score=28.66 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=39.2
Q ss_pred CccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-------CCHHHHHHHHHHhCC
Q 006956 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELP 271 (624)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-------~~l~eLL~~l~~~l~ 271 (624)
+...|-+ ..+++.++++++.+.+.|++.|.|.|.. ......+ .-+..-++.|++.+|
T Consensus 40 ~sMPG~~-r~s~d~l~~~~~~~~~~Gi~~v~LFgv~--~~Kd~~gs~A~~~~g~v~~air~iK~~~p 103 (314)
T cd00384 40 SSMPGVY-RLSVDSLVEEAEELADLGIRAVILFGIP--EHKDEIGSEAYDPDGIVQRAIRAIKEAVP 103 (314)
T ss_pred CCCCCce-eeCHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCcccccCCCChHHHHHHHHHHhCC
Confidence 3444444 4589999999999999999999999862 2211111 125677888887765
No 363
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=21.07 E-value=3.8e+02 Score=28.82 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=39.5
Q ss_pred CccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-------CCHHHHHHHHHHhCC
Q 006956 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELP 271 (624)
Q Consensus 212 p~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-------~~l~eLL~~l~~~l~ 271 (624)
+...|-+ ..+++.++++++.+.+.|++.|.|.|.. ......+ .-+..-++.|++.+|
T Consensus 50 ~smPg~~-r~sid~l~~~~~~~~~~Gi~~v~lFgv~--~~Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (322)
T PRK13384 50 STLPGIS-RLPESALADEIERLYALGIRYVMPFGIS--HHKDAKGSDTWDDNGLLARMVRTIKAAVP 113 (322)
T ss_pred CCCCCcc-eECHHHHHHHHHHHHHcCCCEEEEeCCC--CCCCCCcccccCCCChHHHHHHHHHHHCC
Confidence 3444444 4589999999999999999999999862 2211111 235677888887765
No 364
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.75 E-value=2.8e+02 Score=26.71 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEE
Q 006956 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (624)
Q Consensus 327 ~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ 383 (624)
-+.+...++.+.+++.+||+.+... --|+ -..++-.+.++.+.+.+++.+.+..
T Consensus 54 ~~~~~~~~~~~~l~~~yp~l~i~g~-~~g~--~~~~~~~~i~~~I~~~~pdiv~vgl 107 (171)
T cd06533 54 AKPEVLEKAAERLRARYPGLKIVGY-HHGY--FGPEEEEEIIERINASGADILFVGL 107 (171)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEe-cCCC--CChhhHHHHHHHHHHcCCCEEEEEC
Confidence 3556666778889999999987642 2222 2234444589999999999887763
No 365
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=20.72 E-value=4.1e+02 Score=28.60 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.5
Q ss_pred ccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-----CCCc---cCCHHHHHHHHHHhCC
Q 006956 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDI---GVNLPILLNAIVAELP 271 (624)
Q Consensus 213 ~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~y-----g~d~---~~~l~eLL~~l~~~l~ 271 (624)
...|-+ ..+++.++++++.+.+.|++.|.|.|...... |... ..-+.+-++.|++.+|
T Consensus 41 smPG~~-r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~p 106 (320)
T cd04824 41 SLPGIN-RYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFP 106 (320)
T ss_pred CCCCce-eeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCC
Confidence 334444 46899999999999999999999998631111 1110 1235778888887765
No 366
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.57 E-value=4.3e+02 Score=31.67 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=38.7
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHH-HHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD-TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~-~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
|+.++|+=-|..-++ |.-....++|.++.- .+-. ++.-....|++++.+|+ +|++-|.+.+.+.
T Consensus 522 ~p~f~IpGRTyPV~~---~~~k~p~eDYVeaavkq~v~-Ihl~~~~GdilIfmtGq--ediE~t~~~i~~~ 586 (1042)
T KOG0924|consen 522 CPQFTIPGRTYPVEI---MYTKTPVEDYVEAAVKQAVQ-IHLSGPPGDILIFMTGQ--EDIECTCDIIKEK 586 (1042)
T ss_pred CceeeecCCccceEE---EeccCchHHHHHHHHhhheE-eeccCCCCCEEEecCCC--cchhHHHHHHHHH
Confidence 677777766665433 434445667665532 2222 22223447999999998 7777787777653
No 367
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.57 E-value=9.2e+02 Score=24.63 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcce
Q 006956 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306 (624)
Q Consensus 227 v~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~ 306 (624)
.+-++.+++.|+..|.|--+. ...+.+++..|++. .....+. ++|..-.+.++.+.....- -..-
T Consensus 74 ~~~i~~fa~agad~It~H~E~--------~~~~~r~i~~Ik~~-----G~kaGv~-lnP~Tp~~~i~~~l~~vD~-VllM 138 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAEA--------TEHIHRTIQLIKEL-----GVKAGLV-LNPATPLEALEPVLDDVDL-VLLM 138 (220)
T ss_pred HHHHHHHHHhCCCEEEEEecc--------CcCHHHHHHHHHHc-----CCeEEEE-ECCCCCHHHHHHHHhhCCE-EEEE
Confidence 455677788999999887652 13568888888763 2333343 5676444433333322110 0001
Q ss_pred ec--cccCCCCCHHHHHhhcC
Q 006956 307 FL--HVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 307 ~l--~IGlQSgsd~vLk~M~R 325 (624)
.+ -+|=|++.+++|.++++
T Consensus 139 sVnPGfgGQ~Fi~~~l~Ki~~ 159 (220)
T COG0036 139 SVNPGFGGQKFIPEVLEKIRE 159 (220)
T ss_pred eECCCCcccccCHHHHHHHHH
Confidence 11 26789999988876643
No 368
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=20.37 E-value=3.1e+02 Score=26.52 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=35.7
Q ss_pred ChhH-HHHHHHHHHhcCceee--C-------CCCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCEEEEccc
Q 006956 71 NQSD-SEYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLVVAGCV 134 (624)
Q Consensus 71 N~~D-se~~~~~L~~~G~~~~--~-------~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~~~~VVVgGc~ 134 (624)
|..+ .+.|+..|.. |+++. + +..++|.|+|-+.+........+...+++... .++++++=+|.
T Consensus 13 ~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 13 QTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred hHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4445 6677777776 76543 1 23458999997765444333455566554321 35666655544
No 369
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.27 E-value=7.3e+02 Score=23.37 Aligned_cols=71 Identities=11% Similarity=0.021 Sum_probs=46.5
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC--------C------HHHHHHHHHH
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE--------T------DEDFNQTVNL 370 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE--------T------eedf~eTl~f 370 (624)
+..+.+......+.... .....+..+.++++ |+.+.+--....... . .+.+.+.+++
T Consensus 9 ~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 79 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEK-------DDEAEELRRLLEDY--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDL 79 (213)
T ss_dssp HSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHT--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCcccccc-------hHHHHHHHHHHHHc--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHH
Confidence 45555544444333222 56777888888888 988655433333222 2 6888999999
Q ss_pred HHHcCCCeEEEEEe
Q 006956 371 IKEYKFPQVHISQF 384 (624)
Q Consensus 371 l~el~~~~v~i~~y 384 (624)
++.++...+.+...
T Consensus 80 a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 80 AKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHTBSEEEEECT
T ss_pred HHHhCCCceeecCc
Confidence 99999988877743
No 370
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=20.18 E-value=4.6e+02 Score=27.00 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVg 131 (624)
.++.+...|+..+..+-+.+...+.+ ...++|+++|++..-.....+.+..+++.+++.|.+|++-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D 163 (303)
T TIGR03168 98 EETELNEPGPEISEEELEQLLEKLRE-------LLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKVILD 163 (303)
T ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHH-------hccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44555556777665555544444432 1356899999664221123345677788888888877654
No 371
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.13 E-value=3.6e+02 Score=29.11 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEe
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~ 281 (624)
.+++.+++.++.+.+.|+..|.+.| .. |.-.+..+.++++.+.+.++ +...+.+.
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~D-T~---G~~~P~~v~~~v~~l~~~l~--~~i~ig~H 195 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVD-SA---GALLPEDVRDRVRALRAALK--PDTQVGFH 195 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCC-CC---CCCCHHHHHHHHHHHHHhcC--CCCeEEEE
Confidence 4889999999999999999999885 23 32233567889999987763 23444444
No 372
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=20.11 E-value=4.3e+02 Score=25.18 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=24.4
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EEcc
Q 006956 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (624)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-VgGc 133 (624)
.+-|++++=|.+= .+ ..+.+.++.+|++|.+|| +++-
T Consensus 100 ~~~Dv~I~iS~SG--~t-~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 100 QPGDVLIGISTSG--NS-PNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CCCCEEEEEeCCC--CC-HHHHHHHHHHHHCCCEEEEEeCC
Confidence 4458877745432 22 356778889999998765 6665
No 373
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.08 E-value=9.5e+02 Score=24.62 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006956 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (624)
Q Consensus 225 ~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 304 (624)
+.++-++.+.+.|+++++++|-+-...+. + .-.++++++.+... ..+.++ -....+. ++.+++.. +
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~--~-~n~~~i~~i~~~~~----~pv~~g-GGi~s~~----d~~~l~~~-G- 96 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGS--E-PNYELIENLASECF----MPLCYG-GGIKTLE----QAKKIFSL-G- 96 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCC--c-ccHHHHHHHHHhCC----CCEEEC-CCCCCHH----HHHHHHHC-C-
Confidence 44555677778999999999765432222 2 23678888876421 233333 1222222 23334432 2
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC-----------CCHHHHHHHHHHHHH
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG-----------ETDEDFNQTVNLIKE 373 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG-----------ETeedf~eTl~fl~e 373 (624)
+..+.+|-. .++ +.+-+.++++.+.+. .+.++.|+--|..| .+..+..+.++.+.+
T Consensus 97 ~~~vvigs~-----~~~------~~~~~~~~~~~~~~~--~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~ 163 (258)
T PRK01033 97 VEKVSINTA-----ALE------DPDLITEAAERFGSQ--SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA 163 (258)
T ss_pred CCEEEEChH-----Hhc------CHHHHHHHHHHhCCC--cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH
Confidence 566677721 111 122333333333211 36677786555211 244456677788888
Q ss_pred cCCCeEEEEEeeeCCCC
Q 006956 374 YKFPQVHISQFYPRPGT 390 (624)
Q Consensus 374 l~~~~v~i~~ysP~PGT 390 (624)
.++..+-++.. .+.||
T Consensus 164 ~g~~~ii~~~i-~~~G~ 179 (258)
T PRK01033 164 LGAGEILLNSI-DRDGT 179 (258)
T ss_pred cCCCEEEEEcc-CCCCC
Confidence 88877665533 33344
Done!