Query 006956
Match_columns 624
No_of_seqs 523 out of 2515
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 100.0 4.7E-48 1.6E-52 404.6 30.9 280 191-477 3-296 (304)
2 1olt_A Oxygen-independent copr 99.9 5.6E-24 1.9E-28 234.3 18.4 214 191-415 52-278 (457)
3 3t7v_A Methylornithine synthas 99.9 6.3E-22 2.2E-26 210.2 19.8 193 193-400 62-255 (350)
4 3iix_A Biotin synthetase, puta 99.9 4.2E-21 1.4E-25 203.0 22.3 193 193-402 54-248 (348)
5 1r30_A Biotin synthase; SAM ra 99.8 1.4E-19 4.6E-24 193.7 24.1 194 193-404 66-267 (369)
6 1tv8_A MOAA, molybdenum cofact 99.7 1.8E-15 6E-20 159.7 25.4 197 192-406 14-219 (340)
7 3c8f_A Pyruvate formate-lyase 99.6 8.1E-14 2.8E-18 138.4 19.2 175 196-391 23-208 (245)
8 2yx0_A Radical SAM enzyme; pre 99.5 1.5E-13 5.2E-18 145.1 20.1 178 196-391 74-281 (342)
9 2z2u_A UPF0026 protein MJ0257; 99.3 5.8E-12 2E-16 131.0 13.6 175 193-392 52-260 (311)
10 2a5h_A L-lysine 2,3-aminomutas 99.2 2.4E-10 8.2E-15 124.2 20.5 182 190-394 113-302 (416)
11 3rfa_A Ribosomal RNA large sub 99.1 7.6E-10 2.6E-14 119.4 17.5 184 191-392 114-319 (404)
12 4fhd_A Spore photoproduct lyas 97.5 0.00033 1.1E-08 74.5 10.5 164 195-373 110-282 (368)
13 3can_A Pyruvate-formate lyase- 97.2 0.0045 1.5E-07 58.5 14.0 132 239-391 5-141 (182)
14 2yxb_A Coenzyme B12-dependent 96.9 0.0084 2.9E-07 56.3 12.0 106 58-165 18-142 (161)
15 1ccw_A Protein (glutamate muta 94.6 0.11 3.9E-06 47.0 8.7 94 59-154 4-121 (137)
16 1req_A Methylmalonyl-COA mutas 93.5 0.28 9.7E-06 56.2 10.8 95 58-154 596-708 (727)
17 2xij_A Methylmalonyl-COA mutas 93.3 0.42 1.4E-05 55.1 11.9 104 58-163 604-726 (762)
18 1ydn_A Hydroxymethylglutaryl-C 92.1 1.8 6E-05 44.1 13.7 147 219-382 21-175 (295)
19 1y80_A Predicted cobalamin bin 91.7 0.61 2.1E-05 45.0 9.2 88 58-149 88-194 (210)
20 2i2x_B MTAC, methyltransferase 91.5 1.4 4.8E-05 44.1 11.9 104 58-167 123-243 (258)
21 2cw6_A Hydroxymethylglutaryl-C 91.2 4.3 0.00015 41.3 15.4 145 219-382 22-176 (298)
22 1xrs_B D-lysine 5,6-aminomutas 89.9 1.4 4.8E-05 44.4 10.1 94 58-154 120-243 (262)
23 2ftp_A Hydroxymethylglutaryl-C 87.9 9.2 0.00031 38.9 14.9 145 219-382 25-179 (302)
24 3kp1_A D-ornithine aminomutase 85.7 1.7 5.7E-05 48.9 8.1 73 79-154 627-720 (763)
25 1req_B Methylmalonyl-COA mutas 85.6 1.1 3.7E-05 50.7 6.9 93 58-154 509-620 (637)
26 1ydo_A HMG-COA lyase; TIM-barr 85.5 8.3 0.00028 39.5 13.0 146 218-382 22-177 (307)
27 1nvm_A HOA, 4-hydroxy-2-oxoval 81.3 11 0.00036 39.2 11.9 138 219-381 25-168 (345)
28 3ezx_A MMCP 1, monomethylamine 81.2 4.1 0.00014 39.6 8.2 77 58-136 92-188 (215)
29 1yez_A MM1357; MAR30, autostru 79.4 5.3 0.00018 31.4 6.8 53 423-477 12-67 (68)
30 3ewb_X 2-isopropylmalate synth 79.0 15 0.00052 37.2 12.0 146 218-381 21-169 (293)
31 3bul_A Methionine synthase; tr 78.0 5.6 0.00019 44.5 8.9 78 58-137 98-191 (579)
32 1yvc_A MRR5; structure, autost 77.1 7.3 0.00025 30.9 7.0 53 423-477 14-69 (70)
33 3ble_A Citramalate synthase fr 72.5 30 0.001 35.8 12.3 144 219-381 36-188 (337)
34 2yci_X 5-methyltetrahydrofolat 71.8 16 0.00055 36.7 9.7 141 219-375 29-193 (271)
35 1eiw_A Hypothetical protein MT 69.5 43 0.0015 29.0 10.7 91 74-166 16-108 (111)
36 3rmj_A 2-isopropylmalate synth 66.7 30 0.001 36.4 10.8 146 218-381 28-176 (370)
37 1aj0_A DHPS, dihydropteroate s 66.1 29 0.001 35.1 10.3 139 218-374 32-207 (282)
38 2jjq_A Uncharacterized RNA met 64.0 8.4 0.00029 41.3 6.1 58 424-484 17-74 (425)
39 1uwv_A 23S rRNA (uracil-5-)-me 64.0 23 0.00078 37.8 9.5 56 426-483 15-73 (433)
40 3eeg_A 2-isopropylmalate synth 63.6 24 0.00081 36.4 9.2 144 219-380 23-169 (325)
41 1t2y_A Metallothionein, MT; pr 62.7 4.5 0.00015 25.9 2.1 14 511-525 2-15 (26)
42 3ivs_A Homocitrate synthase, m 61.4 63 0.0022 34.6 12.3 142 218-381 55-199 (423)
43 1tx2_A DHPS, dihydropteroate s 57.2 54 0.0019 33.3 10.4 139 220-374 59-226 (297)
44 2h1q_A Hypothetical protein; Z 54.8 10 0.00034 38.3 4.4 65 94-162 185-251 (270)
45 3l5o_A Uncharacterized protein 54.2 6.5 0.00022 39.7 2.9 65 94-162 185-251 (270)
46 1eye_A DHPS 1, dihydropteroate 53.1 1E+02 0.0034 31.0 11.5 141 219-374 24-199 (280)
47 2nx9_A Oxaloacetate decarboxyl 51.5 1.8E+02 0.0062 31.4 14.0 136 220-381 26-177 (464)
48 2ztj_A Homocitrate synthase; ( 50.9 1.2E+02 0.0042 31.7 12.3 140 219-381 20-163 (382)
49 1rqb_A Transcarboxylase 5S sub 50.4 2E+02 0.0068 31.7 14.2 140 220-381 43-194 (539)
50 2dqw_A Dihydropteroate synthas 46.8 61 0.0021 33.0 8.8 141 219-374 47-219 (294)
51 3rr1_A GALD, putative D-galact 46.0 1.2E+02 0.0042 31.9 11.4 100 221-325 124-226 (405)
52 1f6y_A 5-methyltetrahydrofolat 45.0 1E+02 0.0036 30.5 10.1 141 218-374 19-183 (262)
53 2y5s_A DHPS, dihydropteroate s 44.0 1.3E+02 0.0044 30.5 10.7 142 219-375 41-217 (294)
54 3hdv_A Response regulator; PSI 42.7 1.4E+02 0.0049 24.6 10.1 106 56-169 5-128 (136)
55 2qxy_A Response regulator; reg 42.1 1.5E+02 0.0051 24.7 10.5 102 58-169 4-122 (142)
56 3npg_A Uncharacterized DUF364 42.1 17 0.00057 36.2 3.6 65 95-163 164-231 (249)
57 2vp8_A Dihydropteroate synthas 41.5 48 0.0016 34.1 7.1 140 219-374 60-239 (318)
58 3tr9_A Dihydropteroate synthas 41.3 2.3E+02 0.0078 29.0 12.1 138 219-373 44-223 (314)
59 3f6c_A Positive transcription 37.9 1.4E+02 0.0047 24.6 8.6 95 71-169 10-121 (134)
60 3lte_A Response regulator; str 37.4 1.1E+02 0.0039 25.0 8.0 103 59-169 7-126 (132)
61 3noy_A 4-hydroxy-3-methylbut-2 34.5 1.5E+02 0.0051 31.0 9.4 140 220-374 42-202 (366)
62 3eod_A Protein HNR; response r 34.1 1.5E+02 0.0051 24.3 8.1 103 59-169 8-127 (130)
63 2rdm_A Response regulator rece 33.2 2E+02 0.0067 23.4 10.7 94 71-169 14-124 (132)
64 3lmz_A Putative sugar isomeras 33.2 2.3E+02 0.008 26.8 10.4 66 305-382 44-109 (257)
65 3kto_A Response regulator rece 33.2 1.5E+02 0.005 24.8 8.0 105 58-168 6-126 (136)
66 4hhu_A OR280; engineered prote 32.9 1.2E+02 0.0041 26.5 7.1 63 354-419 87-152 (170)
67 1lgh_A LH II, B800/850, light 32.1 27 0.00093 26.7 2.5 30 588-617 7-36 (56)
68 3rht_A (gatase1)-like protein; 32.1 62 0.0021 32.2 6.0 76 58-136 4-91 (259)
69 3jva_A Dipeptide epimerase; en 31.8 1.8E+02 0.006 29.8 9.7 90 221-321 138-227 (354)
70 2nly_A BH1492 protein, diverge 31.2 1.9E+02 0.0064 28.5 9.2 134 276-415 28-182 (245)
71 3lua_A Response regulator rece 30.0 2.4E+02 0.0081 23.4 9.8 105 58-169 4-128 (140)
72 3snk_A Response regulator CHEY 30.0 1.2E+02 0.0042 25.2 6.9 103 57-167 13-132 (135)
73 3hv2_A Response regulator/HD d 29.9 2.5E+02 0.0087 23.7 9.3 106 53-167 9-132 (153)
74 3f6p_A Transcriptional regulat 29.9 2.2E+02 0.0076 23.0 9.2 92 71-166 11-117 (120)
75 3inp_A D-ribulose-phosphate 3- 29.8 4E+02 0.014 26.0 13.1 133 218-392 34-171 (246)
76 3sbf_A Mandelate racemase / mu 29.7 2.7E+02 0.0093 29.0 10.9 101 221-325 132-249 (401)
77 3i42_A Response regulator rece 29.6 2.1E+02 0.0071 23.2 8.3 93 71-167 12-121 (127)
78 3apt_A Methylenetetrahydrofola 29.5 73 0.0025 32.5 6.1 50 220-269 82-137 (310)
79 4dad_A Putative pilus assembly 28.9 2.2E+02 0.0074 23.9 8.4 104 58-169 20-142 (146)
80 3gt7_A Sensor protein; structu 27.6 2.4E+02 0.0081 24.1 8.6 102 59-168 8-127 (154)
81 3ozy_A Putative mandelate race 27.5 2.1E+02 0.0071 29.8 9.5 94 220-324 149-242 (389)
82 3vnd_A TSA, tryptophan synthas 26.6 1.7E+02 0.0058 29.1 8.1 22 321-342 71-92 (267)
83 1jeo_A MJ1247, hypothetical pr 26.5 1.8E+02 0.0062 26.0 7.9 71 59-134 41-119 (180)
84 1ydn_A Hydroxymethylglutaryl-C 26.3 4.8E+02 0.016 25.7 18.3 63 192-271 136-198 (295)
85 3ovp_A Ribulose-phosphate 3-ep 26.0 2.3E+02 0.0078 27.3 8.8 132 219-392 12-149 (228)
86 2j48_A Two-component sensor ki 26.0 94 0.0032 24.6 5.2 88 71-164 10-114 (119)
87 3fst_A 5,10-methylenetetrahydr 25.5 5.3E+02 0.018 26.0 15.0 124 220-367 93-223 (304)
88 3jte_A Response regulator rece 25.5 2.9E+02 0.0098 22.9 8.8 102 58-168 3-123 (143)
89 2qgh_A Diaminopimelate decarbo 25.4 2.9E+02 0.0099 28.8 10.2 46 323-369 174-221 (425)
90 3r0u_A Enzyme of enolase super 24.7 3.7E+02 0.013 27.8 10.8 94 221-325 141-236 (379)
91 4dwd_A Mandelate racemase/muco 24.7 3.2E+02 0.011 28.4 10.3 98 221-323 138-237 (393)
92 1srr_A SPO0F, sporulation resp 24.5 2.8E+02 0.0094 22.3 8.1 94 71-168 12-121 (124)
93 2pju_A Propionate catabolism o 24.4 1.6E+02 0.0056 28.4 7.3 86 59-166 107-192 (225)
94 2ox4_A Putative mandelate race 24.4 2.9E+02 0.01 28.6 10.0 102 220-325 144-257 (403)
95 1m3s_A Hypothetical protein YC 24.4 1.8E+02 0.0061 26.2 7.4 70 59-133 38-115 (186)
96 2qr3_A Two-component system re 24.4 2.7E+02 0.0091 22.9 8.1 95 71-169 12-127 (140)
97 3mcm_A 2-amino-4-hydroxy-6-hyd 23.9 2.1E+02 0.0073 30.6 8.7 65 221-286 209-280 (442)
98 4e38_A Keto-hydroxyglutarate-a 23.7 4E+02 0.014 25.8 10.0 45 218-271 40-84 (232)
99 3sho_A Transcriptional regulat 23.7 2.2E+02 0.0076 25.5 7.9 69 62-133 41-123 (187)
100 3q45_A Mandelate racemase/muco 23.6 1.8E+02 0.0063 29.9 8.1 93 221-324 139-231 (368)
101 2gl5_A Putative dehydratase pr 23.5 2.9E+02 0.01 28.7 9.7 101 220-324 148-265 (410)
102 3stp_A Galactonate dehydratase 23.4 2.1E+02 0.0073 30.1 8.7 97 222-322 179-275 (412)
103 3tj4_A Mandelate racemase; eno 23.0 6.2E+02 0.021 25.8 12.1 94 220-323 149-243 (372)
104 1h7n_A 5-aminolaevulinic acid 22.8 1.7E+02 0.0056 30.3 7.1 60 211-271 57-124 (342)
105 3i9v_6 NADH-quinone oxidoreduc 22.8 16 0.00054 34.7 -0.4 72 60-136 35-114 (181)
106 2plj_A Lysine/ornithine decarb 22.2 4.3E+02 0.015 27.5 10.8 114 227-366 109-227 (419)
107 3nav_A Tryptophan synthase alp 22.0 5.3E+02 0.018 25.5 10.8 26 320-345 72-97 (271)
108 3hzh_A Chemotaxis response reg 22.0 3.7E+02 0.013 22.9 9.2 99 58-165 36-154 (157)
109 2rdx_A Mandelate racemase/muco 21.9 5.4E+02 0.018 26.3 11.3 133 222-377 145-290 (379)
110 2h9a_B CO dehydrogenase/acetyl 21.7 4.8E+02 0.016 26.4 10.5 141 224-373 74-229 (310)
111 3lpe_B DNA-directed RNA polyme 21.5 33 0.0011 26.5 1.3 24 195-219 9-32 (59)
112 1tzz_A Hypothetical protein L1 21.4 6.7E+02 0.023 25.7 12.6 95 221-325 164-258 (392)
113 3qrx_B Melittin; calcium-bindi 21.3 34 0.0012 21.6 1.1 12 552-563 14-25 (26)
114 3mqt_A Mandelate racemase/muco 21.2 2.5E+02 0.0086 29.2 8.6 87 225-320 155-244 (394)
115 3rcy_A Mandelate racemase/muco 21.1 3.9E+02 0.013 28.2 10.2 99 221-323 145-249 (433)
116 1qkk_A DCTD, C4-dicarboxylate 21.0 3.7E+02 0.013 22.6 9.2 92 71-167 12-120 (155)
117 1pv8_A Delta-aminolevulinic ac 20.7 1.8E+02 0.0062 29.9 6.9 60 211-271 47-113 (330)
118 3cg4_A Response regulator rece 20.6 3.6E+02 0.012 22.1 8.5 101 58-166 7-125 (142)
119 3crn_A Response regulator rece 20.4 3.4E+02 0.012 22.2 7.9 93 71-167 12-120 (132)
120 4e4u_A Mandalate racemase/muco 20.3 3.6E+02 0.012 28.3 9.6 101 221-325 143-249 (412)
121 1w5q_A Delta-aminolevulinic ac 20.1 1.9E+02 0.0065 29.8 6.9 75 192-271 38-120 (337)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=4.7e-48 Score=404.61 Aligned_cols=280 Identities=28% Similarity=0.472 Sum_probs=228.2
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--cCCHHHHHHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 268 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--~~~l~eLL~~l~~ 268 (624)
+..+||++++||+++|+||.+|..+|+.|++++++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+|++.+.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~ 82 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS 82 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999998653 2579999999976
Q ss_pred hCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 006956 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (624)
Q Consensus 269 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i 348 (624)
.+ +..|+++.+++|..+++++ +..+...+++|+++++|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+
T Consensus 83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i 157 (304)
T 2qgq_A 83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVL 157 (304)
T ss_dssp -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEE
T ss_pred -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence 44 5679999889999887765 555555666689999999999999999999999999999999999998889999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hCccccCCC
Q 006956 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEG 425 (624)
Q Consensus 349 ~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R~~~L~~l~~~--~~~~~~~vG 425 (624)
.+|||+||||||+++|++|++++++++++.+++|+|+|+||||+++++ ++|++++++|.++|+++++. .+++++++|
T Consensus 158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g 237 (304)
T 2qgq_A 158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVG 237 (304)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998 99999999999999999985 467899999
Q ss_pred cEEEEEEEEEecCCeee----eeEEE-----EEcCCCCCCCCEEEEEEEEEecceEEEEEE
Q 006956 426 RVERIWITEIAADGIHL----GYVQV-----LVPSTGNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 426 ~~~~VLve~~~~~g~~~----~y~~V-----~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
++++||||+.. ++.+. +|.+| +++.+. .+|++++|+|+++..++|.|+++
T Consensus 238 ~~~~vl~e~~~-~~~~~g~~~~~~~~~dg~~~~~~~~-~~g~~~~v~i~~~~~~~l~g~~~ 296 (304)
T 2qgq_A 238 KKLKFLVEGKE-GKFLVGRTWTEAPEVDGVVFVRGKG-KIGDFLEVVIKEHDEYDMWGSVI 296 (304)
T ss_dssp CEEEEEEEEEE-TTEEEEEETTCCTTTSCCEEEESCC-CTTCEEEEEEEEEETTEEEEEEC
T ss_pred CEEEEEEEecC-CCEEEEECCCCcEeccceEEEcCCC-CCCCEEEEEEEEeeCCeEEEEEE
Confidence 99999999863 33332 56555 776544 78999999999999999999975
No 2
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.91 E-value=5.6e-24 Score=234.26 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=166.4
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCC---CcccCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCccCCHHHHH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG---~~Rsr~~e~Iv~EI~~L~~~----GvkeI~l~g~d~~~yg~d~~~~l~eLL 263 (624)
+...||.|. +|+++|+||..+...+ ..+.++++.|++|++.+.+. ++..|+|.|.+.+.... ..+.+|+
T Consensus 52 ~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~~---~~l~~ll 127 (457)
T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRLM 127 (457)
T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHHH
T ss_pred ceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCCH---HHHHHHH
Confidence 467899997 6999999999876432 24566789999999987764 46778888754433222 3578899
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 006956 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (624)
Q Consensus 264 ~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~ 343 (624)
+.+.+.++.....++++. ++|+.++++. +..+. ..+ +++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 128 ~~i~~~~~~~~~~eitie-~~p~~l~~e~--l~~L~-~~G-~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~- 201 (457)
T 1olt_A 128 KLLRENFQFNADAEISIE-VDPREIELDV--LDHLR-AEG-FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI- 201 (457)
T ss_dssp HHHHHHSCEEEEEEEEEE-ECSSSCCTHH--HHHHH-HTT-CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHhCCCCCCcEEEEE-EccCcCCHHH--HHHHH-HcC-CCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHc-
Confidence 999875431134577775 7999887654 44333 344 79999999999999999999999999999999999999
Q ss_pred CCCE-EEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc-C--C-CCC-HHHHHHHHHHHHHHHH
Q 006956 344 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-M--K-KVP-SAVVKKRSRELTSVFE 415 (624)
Q Consensus 344 pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~-~--~-~vp-~~~~~~R~~~L~~l~~ 415 (624)
|+. +.+|+|+|+||||.+++.+|++++.++++++++++.|+|.|||+++. + + ++| +++..+....+.+...
T Consensus 202 -G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 278 (457)
T 1olt_A 202 -GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT 278 (457)
T ss_dssp -TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHH
Confidence 997 99999999999999999999999999999999999999999999875 2 2 354 3433344444444333
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.88 E-value=6.3e-22 Score=210.18 Aligned_cols=193 Identities=15% Similarity=0.190 Sum_probs=155.7
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC-cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~-~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
.+.|.+++||+++|.||.++...+. ...+++++|+++++.+.+.|+++|.|+|.+...|..+ ...+.++++.+.+..+
T Consensus 62 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~-~~~~~~l~~~ik~~~~ 140 (350)
T 3t7v_A 62 NCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYED-PNRFVELVQIVKEELG 140 (350)
T ss_dssp EEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHS-THHHHHHHHHHHHHHC
T ss_pred EEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccC-HHHHHHHHHHHHhhcC
Confidence 4578899999999999998765432 2237999999999999999999999988654433211 1356888888876532
Q ss_pred CCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 006956 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (624)
Q Consensus 272 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td 351 (624)
..+. +++..++++. +..+. ..+ +.++.+|+||+++++++.|+++++.+++.++++.+++. |+.+.++
T Consensus 141 ----i~i~---~s~g~~~~e~--l~~L~-~aG-~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 207 (350)
T 3t7v_A 141 ----LPIM---ISPGLMDNAT--LLKAR-EKG-ANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQ--GYCVEDG 207 (350)
T ss_dssp ----SCEE---EECSSCCHHH--HHHHH-HTT-EEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHH--TCEEEEE
T ss_pred ----ceEE---EeCCCCCHHH--HHHHH-HcC-CCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEccc
Confidence 2233 3444444433 44443 334 78899999999999999999999999999999999999 9999999
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCH
Q 006956 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 400 (624)
Q Consensus 352 ~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~ 400 (624)
+|+|+ |||.+++.++++++++++++.+.+++|.|.||||+++.+..+.
T Consensus 208 ~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~ 255 (350)
T 3t7v_A 208 ILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSN 255 (350)
T ss_dssp EEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCC
T ss_pred eEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCCh
Confidence 99999 9999999999999999999999999999999999998875444
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.87 E-value=4.2e-21 Score=203.03 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=155.9
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCc--ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhC
Q 006956 193 VEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (624)
Q Consensus 193 ~a~I~isrGCp~~CsFC~ip~~rG~~--Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l 270 (624)
.+.|.+++||+++|.||..+...+.. ..+++++|+++++.+.+.|+++|.|+|.....+.. ..+.++++.+.+.
T Consensus 54 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~---~~~~~li~~i~~~- 129 (348)
T 3iix_A 54 RAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMP---DVISDIVKEIKKM- 129 (348)
T ss_dssp EEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTT---HHHHHHHHHHHTT-
T ss_pred EEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccH---HHHHHHHHHHHhc-
Confidence 46789999999999999987655432 23699999999999999999999999876333321 3467788877652
Q ss_pred CCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 006956 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350 (624)
Q Consensus 271 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~t 350 (624)
...+.+ ++..++++. +..+.. .+ +.++.+++||+++++++.++++.+.+++.+.++.+++. |+.+.+
T Consensus 130 ----~~~i~~---s~g~l~~e~--l~~L~~-ag-~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 196 (348)
T 3iix_A 130 ----GVAVTL---SLGEWPREY--YEKWKE-AG-ADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETGA 196 (348)
T ss_dssp ----SCEEEE---ECCCCCHHH--HHHHHH-HT-CCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ----CceEEE---ecCCCCHHH--HHHHHH-hC-CCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHh--CCeecc
Confidence 123332 333344432 333333 23 67889999999999999999999999999999999999 999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCCCCCHHH
Q 006956 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 402 (624)
Q Consensus 351 d~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~~vp~~~ 402 (624)
++|+|+||||.+++.++++++++++++.+.+++|.|.||||+++.+..+.++
T Consensus 197 ~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e 248 (348)
T 3iix_A 197 GSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTL 248 (348)
T ss_dssp CBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHH
T ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999887666544
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.84 E-value=1.4e-19 Score=193.74 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=153.0
Q ss_pred EEEEEe-CCCCCCCCCCcccCccC--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-cCCHHHHHHHH
Q 006956 193 VEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAI 266 (624)
Q Consensus 193 ~a~I~i-srGCp~~CsFC~ip~~r--G--~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~-~~~l~eLL~~l 266 (624)
..+|.+ ++||+++|.||..+... + +++.+++++|+++++.+.+.|+++|.|+|... ++... ...+.++++.+
T Consensus 66 ~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~--~p~~~~~~~l~~ll~~i 143 (369)
T 1r30_A 66 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK--NPHERDMPYLEQMVQGV 143 (369)
T ss_dssp EEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--SCCTTTHHHHHHHHHHH
T ss_pred EEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCC--CCCcCCHHHHHHHHHHH
Confidence 456776 99999999999987643 2 35668999999999999999999999987421 11111 13567788887
Q ss_pred HHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 006956 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 267 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi 346 (624)
.+. +. .+. +++..++++. +..+.. .+ +.++++++|| ++++++.|+|+++.+++++.++.+++. |+
T Consensus 144 k~~----g~-~i~---~t~G~l~~e~--l~~L~~-aG-vd~v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~--Gi 208 (369)
T 1r30_A 144 KAM----GL-EAC---MTLGTLSESQ--AQRLAN-AG-LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GI 208 (369)
T ss_dssp HHT----TS-EEE---EECSSCCHHH--HHHHHH-HC-CCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHH--HC
T ss_pred HHc----CC-eEE---EecCCCCHHH--HHHHHH-CC-CCEEeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHc--CC
Confidence 753 22 232 3444444432 333333 23 7899999999 999999999999999999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHcC--CCeEEEEEeeeCCCCccccCCCCCHHHHH
Q 006956 347 QIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPAARMKKVPSAVVK 404 (624)
Q Consensus 347 ~i~td~IvGfPGETeedf~eTl~fl~el~--~~~v~i~~ysP~PGTpa~~~~~vp~~~~~ 404 (624)
.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+.++.++..
T Consensus 209 ~v~~~~I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~ 267 (369)
T 1r30_A 209 KVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFI 267 (369)
T ss_dssp EEECCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHH
T ss_pred eeeeeeEeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHH
Confidence 9999999999 999999999999999997 88999999999999999987767765433
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.70 E-value=1.8e-15 Score=159.68 Aligned_cols=197 Identities=13% Similarity=0.209 Sum_probs=155.2
Q ss_pred eEEEEEeCCCCCCCCCCcccCcc-------CCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHA-------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~-------rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~ 264 (624)
....|.++++||++|.||..+.. .+....++.+++.+.++.+.+.|++.|.|+|.+.+.+ .++.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~-----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR-----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccch-----hhHHHHHH
Confidence 35678999999999999987652 1234568899999999999999999999998765543 35788888
Q ss_pred HHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhC
Q 006956 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 343 (624)
Q Consensus 265 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~-t~e~~~e~I~~lr~~~ 343 (624)
.+.+. . +...+.+. +|...+.+.+ ..+... + +.++.++++|.++++++.++++. +.+++.+.|+.++++
T Consensus 89 ~~~~~-~--~~~~i~i~-TNG~ll~~~~---~~L~~~-g-~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~- 158 (340)
T 1tv8_A 89 KLNQI-D--GIEDIGLT-TNGLLLKKHG---QKLYDA-G-LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSI- 158 (340)
T ss_dssp HHTTC-T--TCCEEEEE-ECSTTHHHHH---HHHHHH-T-CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHhC-C--CCCeEEEE-eCccchHHHH---HHHHHC-C-CCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHC-
Confidence 88653 2 33366664 6776665533 223322 2 67899999999999999998887 999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHH
Q 006956 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 406 (624)
Q Consensus 344 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~~~-~vp~~~~~~R 406 (624)
|+.+...+++ +||++.+++.++++++.+++++ +.+..|+|.++|+.+... .++.++..++
T Consensus 159 -g~~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~~ 219 (340)
T 1tv8_A 159 -GLNVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTM 219 (340)
T ss_dssp -TCEEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBCCSSCCCHHHHHHH
T ss_pred -CCCEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccchhhcCCCHHHHHHH
Confidence 9888888777 7999999999999999999996 778889999999877654 6776554443
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.57 E-value=8.1e-14 Score=138.43 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=130.0
Q ss_pred EEeCCCCCCCCCCcccCccC--CCcccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCccCC-HHHHHHHHHHh
Q 006956 196 LPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAE 269 (624)
Q Consensus 196 I~isrGCp~~CsFC~ip~~r--G~~Rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~d~~~yg~d~~~~-l~eLL~~l~~~ 269 (624)
+.++.||+++|.||..+... +..+.+++++++++++.+.+. ++..|.|+|.+.+.+ .+ +.++++.+.+.
T Consensus 23 ~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~-----~~~l~~l~~~~~~~ 97 (245)
T 3c8f_A 23 ITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQ-----AEFVRDWFRACKKE 97 (245)
T ss_dssp EEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGG-----HHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCC-----HHHHHHHHHHHHHc
Confidence 34567999999999987543 346678999999999987764 478999999765543 22 46777777652
Q ss_pred CCCCCCceEEEeecCCcc--hhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 006956 270 LPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 270 l~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~ 347 (624)
+ ..+.+. ++... ..+. +.+++.. +..+.++++|+++++++.+++. +.+++.+.++.++++ |+.
T Consensus 98 ----~-~~i~i~-Tng~~~~~~~~---~~~l~~~---~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~--g~~ 162 (245)
T 3c8f_A 98 ----G-IHTCLD-TNGFVRRYDPV---IDELLEV---TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANK--NVK 162 (245)
T ss_dssp ----T-CCEEEE-ECCCCCCCCHH---HHHHHHT---CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHH--TCC
T ss_pred ----C-CcEEEE-eCCCcCcCHHH---HHHHHHh---CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhc--CCE
Confidence 2 245554 45432 2333 3334432 4679999999999999999654 469999999999999 877
Q ss_pred EEEEEEEcCCC--CCHHHHHHHHHHHHHcCC-CeEEEEEeeeCCCCc
Q 006956 348 IATDIICGFPG--ETDEDFNQTVNLIKEYKF-PQVHISQFYPRPGTP 391 (624)
Q Consensus 348 i~td~IvGfPG--ETeedf~eTl~fl~el~~-~~v~i~~ysP~PGTp 391 (624)
+...+++ .|| ++.+++.++++++.++++ ..+++.+|.|.++++
T Consensus 163 v~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3c8f_A 163 VWIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHK 208 (245)
T ss_dssp EEEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHH
T ss_pred EEEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhH
Confidence 6666555 565 678999999999999995 889999999988764
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.55 E-value=1.5e-13 Score=145.12 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=130.1
Q ss_pred EEeC-CCCCCCCCCcccCccC-----CCcccCCHHHHHHHHHHHHHC------C--------------CcEEEEe-ecCC
Q 006956 196 LPIN-VGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIAD------G--------------VKEVWLS-SEDT 248 (624)
Q Consensus 196 I~is-rGCp~~CsFC~ip~~r-----G~~Rsr~~e~Iv~EI~~L~~~------G--------------vkeI~l~-g~d~ 248 (624)
+..+ +||+++|.||..+... +..+..++++|++++..+.+. | ++.|.|+ |.+.
T Consensus 74 i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP 153 (342)
T 2yx0_A 74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP 153 (342)
T ss_dssp EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG
T ss_pred EEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc
Confidence 3444 7999999999987542 145678899999998776431 2 4678886 6555
Q ss_pred CCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC---
Q 006956 249 GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR--- 325 (624)
Q Consensus 249 ~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R--- 325 (624)
..+ ..+.++++.+.+. + ..+.+. ++... .+. +..+...+.....+.++++++++++++.+++
T Consensus 154 ll~-----~~l~~ll~~~~~~----g-~~i~l~-TNG~~-~e~---l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~ 218 (342)
T 2yx0_A 154 MLY-----PYMGDLVEEFHKR----G-FTTFIV-TNGTI-PER---LEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMI 218 (342)
T ss_dssp GGS-----TTHHHHHHHHHHT----T-CEEEEE-ECSCC-HHH---HHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSS
T ss_pred cch-----hhHHHHHHHHHHC----C-CcEEEE-cCCCc-HHH---HHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCc
Confidence 444 3588999988763 3 355564 55543 222 3334433223679999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCc
Q 006956 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 391 (624)
Q Consensus 326 ~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTp 391 (624)
+++.+++.+.++.+++. |+.+...+++ +||++.++++++++++++++++++++.+|.|.|+++
T Consensus 219 ~~~~~~~~~~i~~l~~~--g~~v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~ 281 (342)
T 2yx0_A 219 PDGWERILRFLELMRDL--PTRTVVRLTL-VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR 281 (342)
T ss_dssp SCHHHHHHHHHHHHTTC--SSEEEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEEEECC------
T ss_pred ccHHHHHHHHHHHHHhC--CCCEEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc
Confidence 56899999999999998 8888888888 699998889999999999999999999999877665
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.34 E-value=5.8e-12 Score=130.96 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=110.6
Q ss_pred EEEEEeC-CCCCCCCCCcccCccC--C-------CcccCCHHHHHHHHHHHHH------CC---------------CcEE
Q 006956 193 VEILPIN-VGCLGACTYCKTKHAR--G-------HLGSYTVESLVGRVRTVIA------DG---------------VKEV 241 (624)
Q Consensus 193 ~a~I~is-rGCp~~CsFC~ip~~r--G-------~~Rsr~~e~Iv~EI~~L~~------~G---------------vkeI 241 (624)
...+.++ .||+++|.||..+... | ..+..++++|++++..+.+ .| ++.|
T Consensus 52 ~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 52 CIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred eEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 4567888 7999999999876422 1 2467889999988766532 12 4578
Q ss_pred EEe-ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHH
Q 006956 242 WLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320 (624)
Q Consensus 242 ~l~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vL 320 (624)
.|+ |.+...+ ..+.++++.+.+. +. .+.+. ++... .+. +..+ + ...+.+++++.+++++
T Consensus 132 ~~s~gGEPll~-----~~l~~li~~~~~~----g~-~~~l~-TNG~~-~~~---l~~L----~-~~~v~isld~~~~~~~ 191 (311)
T 2z2u_A 132 AISLSGEPTLY-----PYLDELIKIFHKN----GF-TTFVV-SNGIL-TDV---IEKI----E-PTQLYISLDAYDLDSY 191 (311)
T ss_dssp EECSSSCGGGS-----TTHHHHHHHHHHT----TC-EEEEE-ECSCC-HHH---HHHC----C-CSEEEEECCCSSTTTC
T ss_pred EEeCCcCccch-----hhHHHHHHHHHHC----CC-cEEEE-CCCCC-HHH---HHhC----C-CCEEEEEeecCCHHHH
Confidence 887 5444443 3588999988763 32 55554 45432 222 3322 2 4689999999999999
Q ss_pred HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 321 SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 321 k~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
+.++++ ++.+++.+.++.+++. | .+...++ ..||.++ ++.+.++++.+++++.+++++|.|.++++.
T Consensus 192 ~~i~~~~~~~~~~v~~~i~~l~~~--g-~v~i~~~-~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~ 260 (311)
T 2z2u_A 192 RRICGGKKEYWESILNTLDILKEK--K-RTCIRTT-LIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQK 260 (311)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS--S-SEEEEEE-ECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------
T ss_pred HHHhCCccchHHHHHHHHHHHHhc--C-CEEEEEE-EECCcch-hHHHHHHHHHHcCCCEEEEEeeEEcccccc
Confidence 999887 6789999999999887 6 4444443 3477777 899999999999999999999999999873
No 10
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.25 E-value=2.4e-10 Score=124.18 Aligned_cols=182 Identities=18% Similarity=0.219 Sum_probs=131.8
Q ss_pred CceEEEEEeCCCCCCCCCCcccCccCC-CcccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCccCCHHHHHHHHH
Q 006956 190 NKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (624)
Q Consensus 190 ~~~~a~I~isrGCp~~CsFC~ip~~rG-~~Rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~ 267 (624)
.+....+.++.||+.+|.||......+ ..+..+.+++.+.++.+.+ .|+++|.|+|.+.+.+.. ..|.++++.+.
T Consensus 113 yp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l~ 189 (416)
T 2a5h_A 113 YPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKLR 189 (416)
T ss_dssp SSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHHH
Confidence 345678899999999999998765444 3456889999999998888 699999999977665421 13788888887
Q ss_pred HhCCCCCCceEEEee----cCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 006956 268 AELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (624)
Q Consensus 268 ~~l~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~ 343 (624)
+ ++ +...+++++ +.|..+++.+ .+.+... ..+++++++.+++ .+ + +++.++++.++++
T Consensus 190 ~-~~--~v~~i~i~Tng~~~~p~~it~e~---l~~L~~~---~~v~Isl~~~~~~---ei----~-~~v~~ai~~L~~a- 251 (416)
T 2a5h_A 190 E-IP--HVEIVRIGSRTPVVLPQRITPEL---VNMLKKY---HPVWLNTHFNHPN---EI----T-EESTRACQLLADA- 251 (416)
T ss_dssp T-ST--TCCEEEEECSHHHHCGGGCCHHH---HHHHGGG---CSEEEEECCCSGG---GC----C-HHHHHHHHHHHHT-
T ss_pred h-cC--CccEEEEEecccccccccCCHHH---HHHHHhc---CcEEEEEecCCHH---HH----h-HHHHHHHHHHHHc-
Confidence 5 43 455788863 1334444433 3333332 4678899988772 22 3 8999999999999
Q ss_pred CCCEEEEEEEE--cCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcccc
Q 006956 344 PGMQIATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 394 (624)
Q Consensus 344 pgi~i~td~Iv--GfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa~~ 394 (624)
|+.+....++ |+. ++++++.+.++++.++++....++.+.+.+||+.++
T Consensus 252 -Gi~v~i~~vll~GvN-d~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~ 302 (416)
T 2a5h_A 252 -GVPLGNQSVLLRGVN-DCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFR 302 (416)
T ss_dssp -TCCEEEEEECCTTTT-CSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGC
T ss_pred -CCEEEEEEEEECCCC-CCHHHHHHHHHHHHHcCCceEEEeecCCCCCccccc
Confidence 8766554443 663 788999999999999998766666666678988654
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.14 E-value=7.6e-10 Score=119.40 Aligned_cols=184 Identities=16% Similarity=0.303 Sum_probs=126.6
Q ss_pred ceEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHH----------CCCcEEEEee-cCCCCCCCCccCCH
Q 006956 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSS-EDTGAYGRDIGVNL 259 (624)
Q Consensus 191 ~~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~----------~GvkeI~l~g-~d~~~yg~d~~~~l 259 (624)
.....|.++.||+++|.||..+.. |..|..++++|++++..... .++..|+|+| .....+ ...+
T Consensus 114 r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPLln----~d~v 188 (404)
T 3rfa_A 114 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLN----LNNV 188 (404)
T ss_dssp CEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGGGC----HHHH
T ss_pred CceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCcccC----HHHH
Confidence 456778888999999999987643 55678999999999987654 2478899985 322221 0235
Q ss_pred HHHHHHHHHhCCCCCC----ceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc---CCCCHHHH
Q 006956 260 PILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDF 332 (624)
Q Consensus 260 ~eLL~~l~~~l~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~---R~~t~e~~ 332 (624)
.++++.+.+.. +. ..+.++ ++.. + +.++++.+ .. -..+.+.+.+.+++..+.+. ++++.+++
T Consensus 189 ~~~i~~lk~~~---Gl~~s~r~itls-TnG~-~-p~i~~L~~---~~--d~~LaiSLka~d~e~~~~i~pv~~~~~le~v 257 (404)
T 3rfa_A 189 VPAMEIMLDDF---GFGLSKRRVTLS-TSGV-V-PALDKLGD---MI--DVALAISLHAPNDEIRDEIVPINKKYNIETF 257 (404)
T ss_dssp HHHHHHHHSTT---TTCCCGGGEEEE-ESCC-H-HHHHHHHH---HC--CCEEEEECCCSSHHHHHHHSGGGGTSCHHHH
T ss_pred HHHHHHHHhhc---CcCcCCCceEEE-CCCc-H-HHHHHHHH---hh--cceEEecccCCCHHHHHHhcCCccCCCHHHH
Confidence 66666665421 22 266775 3432 2 33333333 22 34677899999999886654 68999999
Q ss_pred HHHHHHH-HHhCC---CCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEeeeCCCCcc
Q 006956 333 RTVVDTL-IELVP---GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 333 ~e~I~~l-r~~~p---gi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~~ysP~PGTpa 392 (624)
++.++.+ .+.-. .+.+.+-+|=|+ .++++++.+.++|++.++. .+++.+|.|+|++++
T Consensus 258 l~ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~~-~VnLIpynP~~~~~~ 319 (404)
T 3rfa_A 258 LAAVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY 319 (404)
T ss_dssp HHHHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSCE-EEEEEECCCCTTCCC
T ss_pred HHHHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHHcCCC-cEEEEeccCCCCCCC
Confidence 9999554 44411 344555455454 7899999999999999874 789999999988653
No 12
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.51 E-value=0.00033 Score=74.46 Aligned_cols=164 Identities=12% Similarity=0.187 Sum_probs=104.2
Q ss_pred EEEeCCCCCCCCCCcccCccCCC----cccCCHHHHHHHHHHHHH-CCCc-EEEEeecCCCCCCCCcc-CCHHHHHHHHH
Q 006956 195 ILPINVGCLGACTYCKTKHARGH----LGSYTVESLVGRVRTVIA-DGVK-EVWLSSEDTGAYGRDIG-VNLPILLNAIV 267 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG~----~Rsr~~e~Iv~EI~~L~~-~Gvk-eI~l~g~d~~~yg~d~~-~~l~eLL~~l~ 267 (624)
++...+||+++|.||......|. ......++++++++...+ .+.+ ..+-+|.++..|..+.. .-..++|+.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 46778999999999987655442 135579999999876443 3333 45556666655532211 22456677665
Q ss_pred HhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCC
Q 006956 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 268 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~-~t~e~~~e~I~~lr~~~pgi 346 (624)
+ . +...+.+.+-.+ .++. |..+...+. ..+.+.+-+ +++-+.+-.+ -+.++-+++++.++++ |+
T Consensus 190 ~-~---~~~~v~i~TKs~-lid~----L~~l~~~~~--v~V~~Sitt--~~l~r~~EP~aps~~~RL~Ai~~l~~a--Gi 254 (368)
T 4fhd_A 190 A-T---DYGRLRFVTKYE-HVDH----LLDARHNGK--TRFRFSINS--RYVINHFEPGTSSFDGRLAAARKVAGA--GY 254 (368)
T ss_dssp H-C---SSEEEEEEESCC-CCGG----GTTCCCTTC--EEEEEEECC--HHHHHHHCTTSCCHHHHHHHHHHHHHT--TC
T ss_pred h-C---CCceEEEEeCCc-CHHH----HHhcCcCCc--eEEEEEEcC--HHHHHHcCCCCCCHHHHHHHHHHHHHC--CC
Confidence 5 2 234566653333 3321 222222232 344445533 6777888765 5799999999999999 99
Q ss_pred EEEEEEEEcCCCCCH-HHHHHHHHHHHH
Q 006956 347 QIATDIICGFPGETD-EDFNQTVNLIKE 373 (624)
Q Consensus 347 ~i~td~IvGfPGETe-edf~eTl~fl~e 373 (624)
.+...+.==+|+++. +++.+.++.+.+
T Consensus 255 pv~v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 255 KLGFVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 988877766888765 688888886655
No 13
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.24 E-value=0.0045 Score=58.49 Aligned_cols=132 Identities=11% Similarity=0.110 Sum_probs=87.2
Q ss_pred cEEEEeecCCCCCCCCccCCH-HHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCH
Q 006956 239 KEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317 (624)
Q Consensus 239 keI~l~g~d~~~yg~d~~~~l-~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd 317 (624)
..|.|+|...+.+ .++ .++++.+.+. + ..+.+. +|.. +.+.. +..++.. ...+.+.+.+.++
T Consensus 5 ~~v~~tGGEPll~-----~~~~~~l~~~~~~~----g-~~~~l~-TNG~-l~~~~--~~~l~~~---~d~v~isld~~~~ 67 (182)
T 3can_A 5 GGVTFCGGEPLLH-----PEFLIDILKRCGQQ----G-IHRAVD-TTLL-ARKET--VDEVMRN---CELLLIDLKSMDS 67 (182)
T ss_dssp CCEEECSSTGGGS-----HHHHHHHHHHHHHT----T-CCEEEE-CTTC-CCHHH--HHHHHHT---CSEEEEECCCSCH
T ss_pred CEEEEEcccccCC-----HHHHHHHHHHHHHC----C-CcEEEE-CCCC-CCHHH--HHHHHhh---CCEEEEECCCCCH
Confidence 3477777655443 234 4777777652 2 345554 5554 33222 3334432 4578899999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHHHHHHHHHHHHc-CC-CeEEEEEeeeCCCCc
Q 006956 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQTVNLIKEY-KF-PQVHISQFYPRPGTP 391 (624)
Q Consensus 318 ~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGETeedf~eTl~fl~el-~~-~~v~i~~ysP~PGTp 391 (624)
+..+.+.. .+.+.+.+.++.+++. |+.+...+ +-|+ .++.+++.+.++++.++ ++ ..+++.+|.|.....
T Consensus 68 ~~~~~~~g-~~~~~i~~~i~~l~~~--g~~v~i~~~v~~~~-n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 68 TVHQTFCD-VPNELILKNIRRVAEA--DFPYYIRIPLIEGV-NADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp HHHHHHHS-SCSHHHHHHHHHHHHT--TCCEEEEEEECBTT-TCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHhC--CCeEEEEEEEECCC-CCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHH
Confidence 98877743 4458999999999998 76554444 3333 37899999999999999 88 899999999987665
No 14
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.87 E-value=0.0084 Score=56.26 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=73.8
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
..+|.+-|.|=-.-..-...++..|+..||+++.. ..++|+|++ |++.+.. ...+.++++.+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~l-S~~~~~~-~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGV-SILNGAH-LHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEE-EESSSCH-HHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-Eeechhh-HHHHHHHHHHHHh
Confidence 45777777765555556789999999999999764 467999999 5555543 4567778888877
Q ss_pred CC---CCEEEEccccCcChh-hhcCCccEEEcCCc-hhHHHHHHHHH
Q 006956 124 AK---KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ-IDRVVEVVEET 165 (624)
Q Consensus 124 ~~---~~VVVgGc~aq~~~e-~~~~~~d~VvG~~~-~~~l~ell~~~ 165 (624)
.+ .+|++||..++...+ +.....|.+++.+. .....+.+.+.
T Consensus 96 ~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 96 LGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp TTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHH
Confidence 64 579999976654443 45667788887654 23455555544
No 15
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=94.63 E-value=0.11 Score=47.05 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=63.0
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (624)
++|.+-|.|=-.-..=...++..|+..||++++. ..+||+|++ |++.+.. ...+.++++.+++.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYGQG-EIDCKGLRQKCDEA 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSSTH-HHHHTTHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-EecCcCc-HHHHHHHHHHHHhc
Confidence 3566666654444455678899999999998743 467999999 5555443 34567777777776
Q ss_pred C---CCEEEEcccc---CcCh---h-hhcCCccEEEcCCc
Q 006956 125 K---KPLVVAGCVP---QGSR---D-LKELEGVSIVGVQQ 154 (624)
Q Consensus 125 ~---~~VVVgGc~a---q~~~---e-~~~~~~d~VvG~~~ 154 (624)
+ .+|++||-.. +.++ + +.++..|.+++.+.
T Consensus 82 g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~ 121 (137)
T 1ccw_A 82 GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137)
T ss_dssp TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred CCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCC
Confidence 4 5699999642 2222 1 44666788887654
No 16
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=93.49 E-value=0.28 Score=56.24 Aligned_cols=95 Identities=13% Similarity=0.225 Sum_probs=69.5
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
..+|.+-|.|--.-..=...++..|+..||++++. ..+||+|+|++ ..+ .....+..+++.+++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l~~-~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSS-LAG-GHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEE-CSS-CHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEee-ecH-hHHHHHHHHHHHHHh
Confidence 35899999997766666778999999999999765 36899999943 333 333457778888888
Q ss_pred CCC---CEEEEccccCcChh-hhcCCccEEEcCCc
Q 006956 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (624)
Q Consensus 124 ~~~---~VVVgGc~aq~~~e-~~~~~~d~VvG~~~ 154 (624)
.|. +|++||-.+....+ +.+..+|.+++.+.
T Consensus 674 ~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt 708 (727)
T 1req_A 674 LGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGT 708 (727)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTTC
T ss_pred cCCCCCEEEEcCCCccccHHHHHhCCCCEEEcCCc
Confidence 764 78999965554333 45677888888654
No 17
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=93.31 E-value=0.42 Score=55.08 Aligned_cols=104 Identities=13% Similarity=0.242 Sum_probs=72.0
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
..+|.+-|.|--.-..=...++..|+..||++++. ..+||+|+|++ . .......+..+++.+++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l-~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVST-L-AAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEE-C-SSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEee-e-cHHHHHHHHHHHHHHHh
Confidence 35899999997765666788999999999999765 36799999943 3 32333457778888888
Q ss_pred CCC---CEEEEccccCcChh-hhcCCccEEEcCC-chhHHHHHHH
Q 006956 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQ-QIDRVVEVVE 163 (624)
Q Consensus 124 ~~~---~VVVgGc~aq~~~e-~~~~~~d~VvG~~-~~~~l~ell~ 163 (624)
.|. +|++||-.|....+ +.+..+|.+++.+ ....+.+.+.
T Consensus 682 ~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~ 726 (762)
T 2xij_A 682 LGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVL 726 (762)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHH
Confidence 775 78999955544333 4566788888754 3333344333
No 18
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=92.14 E-value=1.8 Score=44.08 Aligned_cols=147 Identities=10% Similarity=0.110 Sum_probs=91.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
...+.++.++-++.|.+.|+..|.+.+.....|-... .+..++++.+.+. ....+.. .-+. .+ .+...
T Consensus 21 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~~~~e~~~~i~~~----~~~~v~~--l~~n--~~---~i~~a 88 (295)
T 1ydn_A 21 RFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQL-ADSREVMAGIRRA----DGVRYSV--LVPN--MK---GYEAA 88 (295)
T ss_dssp SCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGG-TTHHHHHHHSCCC----SSSEEEE--ECSS--HH---HHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccc-cCHHHHHHHHHhC----CCCEEEE--EeCC--HH---HHHHH
Confidence 4588999999999999999999988764322221101 1345666666431 1223322 2232 12 23334
Q ss_pred HhCCCcceeccccCCCCCHHHHH-hhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHHHH
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVLS-AMNREY--TLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVNL 370 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vLk-~M~R~~--t~e~~~e~I~~lr~~~pgi~i~td~I--vGfPGE---Teedf~eTl~f 370 (624)
...+ +..+++.+ ++|+.-.+ .+++.. ..+.+.+.++.+++. |+.+.+.+. +|.|.+ +.+.+.+.++.
T Consensus 89 ~~~G--~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 89 AAAH--ADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHTT--CSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHCC--CCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 4332 56677644 55666554 344432 456667778999999 999988777 454543 56777777777
Q ss_pred HHHcCCCeEEEE
Q 006956 371 IKEYKFPQVHIS 382 (624)
Q Consensus 371 l~el~~~~v~i~ 382 (624)
+.+.+.+.+.+.
T Consensus 164 ~~~~G~d~i~l~ 175 (295)
T 1ydn_A 164 LFSLGCHEVSLG 175 (295)
T ss_dssp HHHHTCSEEEEE
T ss_pred HHhcCCCEEEec
Confidence 779999988876
No 19
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=91.73 E-value=0.61 Score=45.00 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=60.3
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
..+|-+-|.+=-.-..-...++..|+..||++... ..++|+|++ |++.+.. ...+.++++.+++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGM-SALLTTT-MMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEE-ECCSGGG-THHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ecccccc-HHHHHHHHHHHHh
Confidence 34666655554444456788999999999998753 357999999 5565544 3467888888877
Q ss_pred CC----CCEEEEccccCcChhh-hcCCccEE
Q 006956 124 AK----KPLVVAGCVPQGSRDL-KELEGVSI 149 (624)
Q Consensus 124 ~~----~~VVVgGc~aq~~~e~-~~~~~d~V 149 (624)
.+ .+|++||..++ +++ ..+..|.+
T Consensus 166 ~~~~~~~~v~vGG~~~~--~~~~~~~gad~~ 194 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLS--QDFADEIGADGY 194 (210)
T ss_dssp TTCGGGCEEEEESTTCC--HHHHHHHTCSEE
T ss_pred cCCCCCCeEEEECCCCC--HHHHHHcCCeEE
Confidence 64 68999998765 443 34445543
No 20
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=91.51 E-value=1.4 Score=44.09 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=68.2
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
.++|-+-|.+=-.-..-...++..|+..||++.+. ..++|+|++ |++.+... ..+.++++.+++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~l-S~l~~~~~-~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTG-TALMTTTM-YAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEE-ECCCTTTT-THHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeeccCCH-HHHHHHHHHHHh
Confidence 45666666654444456778899999999998632 357999999 55555432 367788888887
Q ss_pred CC--CCEEEEccccCcChhh-hcCCccEEEcCCchhHHHHHHHHHhc
Q 006956 124 AK--KPLVVAGCVPQGSRDL-KELEGVSIVGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 124 ~~--~~VVVgGc~aq~~~e~-~~~~~d~VvG~~~~~~l~ell~~~~~ 167 (624)
.+ .+|+|||..++ ++. ..+..| +.+... ...++++.+...
T Consensus 201 ~~~~~~v~vGG~~~~--~~~~~~igad-~~~~da-~~av~~~~~l~~ 243 (258)
T 2i2x_B 201 NGIKIPFACGGGAVN--QDFVSQFALG-VYGEEA-ADAPKIADAIIA 243 (258)
T ss_dssp TTCCCCEEEESTTCC--HHHHHTSTTE-EECSST-THHHHHHHHHHT
T ss_pred cCCCCcEEEECccCC--HHHHHHcCCe-EEECCH-HHHHHHHHHHHc
Confidence 65 68999998776 443 344444 444444 345566665543
No 21
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=91.21 E-value=4.3 Score=41.34 Aligned_cols=145 Identities=10% Similarity=0.137 Sum_probs=93.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 296 (624)
...+.++.++-++.|.+.|++.|-+.+.. .....+ .+..++++.+.+ .+ ...+.. +-+. . ..+.
T Consensus 22 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~---~~~~~p~~~d~~~~~~~~~~-~~---~~~~~~--l~~~--~---~~i~ 87 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSEAGLSVIETTSFV---SPKWVPQMGDHTEVLKGIQK-FP---GINYPV--LTPN--L---KGFE 87 (298)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEECCEECC---CTTTCGGGTTHHHHHHHSCC-CT---TCBCCE--ECCS--H---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCc---CcccccccCCHHHHHHHHhh-CC---CCEEEE--EcCC--H---HhHH
Confidence 45789999999999999999998876522 121111 234455554432 22 122222 2232 1 2234
Q ss_pred HHHhCCCcceeccccCCCCCHH-HHHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEE--cCCCC---CHHHHHHHH
Q 006956 297 EVLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTV 368 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd~-vLk~M~R~~--t~e~~~e~I~~lr~~~pgi~i~td~Iv--GfPGE---Teedf~eTl 368 (624)
..+..+ ...+++.+ +.|+. ..+.+++.. ..+.+.+.++.+++. |+.+..++++ |.|.+ +.+.+.+.+
T Consensus 88 ~a~~ag--~~~v~i~~-~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~--G~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (298)
T 2cw6_A 88 AAVAAG--AKEVVIFG-AASELFTKKNINCSIEESFQRFDAILKAAQSA--NISVRGYVSCALGCPYEGKISPAKVAEVT 162 (298)
T ss_dssp HHHHTT--CSEEEEEE-ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT--TCEEEEEEETTTCBTTTBSCCHHHHHHHH
T ss_pred HHHHCC--CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 344432 57788855 55554 446677753 567888899999999 9999999884 44532 578888888
Q ss_pred HHHHHcCCCeEEEE
Q 006956 369 NLIKEYKFPQVHIS 382 (624)
Q Consensus 369 ~fl~el~~~~v~i~ 382 (624)
+.+.+++.+.+.+.
T Consensus 163 ~~~~~~Ga~~i~l~ 176 (298)
T 2cw6_A 163 KKFYSMGCYEISLG 176 (298)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEec
Confidence 99999999987765
No 22
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=89.92 E-value=1.4 Score=44.41 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=61.1
Q ss_pred CceEEEEecCCccChhHHHHHHHH--------HHhc-CceeeCC--------------CCCCcEEEEeecccccc--hHH
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQ--------LSAF-GYALTDN--------------SEEADIWLINTCTVKSP--SQS 112 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~--------L~~~-G~~~~~~--------------~~~ADlviINTCtv~~~--ae~ 112 (624)
..+|-+-|.|=-.-..--..++.. |+.. ||++++- ..+||+|++ |++.+.. ...
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~Vgl-S~l~t~~~~~~~ 198 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLV-SQTVTQKNVHIQ 198 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCTTSHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeecCCccchHH
Confidence 345544444322222334455555 8999 9998754 478999999 7777651 335
Q ss_pred HHHHHHHHHhhCC----CCEEEEccccCcChh-hhcCCccEEEcCCc
Q 006956 113 AMDTLIAKCKSAK----KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (624)
Q Consensus 113 ~~~~~ir~~k~~~----~~VVVgGc~aq~~~e-~~~~~~d~VvG~~~ 154 (624)
.+.+.++.+++.+ .+|++||-.. .++ ..++..|.+.+...
T Consensus 199 ~~~~~i~~L~~~g~~~~i~vivGG~~~--~~~~a~~iGad~~~~da~ 243 (262)
T 1xrs_B 199 NMTHLIELLEAEGLRDRFVLLCGGPRI--NNEIAKELGYDAGFGPGR 243 (262)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEECTTC--CHHHHHTTTCSEEECTTC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCcC--CHHHHHHcCCeEEECCch
Confidence 6777788887765 5789999743 455 34667788887765
No 23
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.94 E-value=9.2 Score=38.93 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=89.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 296 (624)
...+.++.++-++.|.+.|++.|...+.. ..... -.+..++++.+.+ . ....+... -+. .+ .+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~---~~~~~~~~~d~~~~~~~~~~-~---~~~~~~~l--~~~--~~---~i~ 90 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSFV---SPKWVPQMAGSAEVFAGIRQ-R---PGVTYAAL--APN--LK---GFE 90 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEECS---CTTTCGGGTTHHHHHHHSCC-C---TTSEEEEE--CCS--HH---HHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCc---CccccccccCHHHHHHHhhh-c---CCCEEEEE--eCC--HH---HHH
Confidence 56789999999999999999998876521 11111 0234455555432 1 22233322 231 12 233
Q ss_pred HHHhCCCcceeccccCCCCCH-HHHHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcC--CCC---CHHHHHHHH
Q 006956 297 EVLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PGE---TDEDFNQTV 368 (624)
Q Consensus 297 ~l~~~~~v~~~l~IGlQSgsd-~vLk~M~R~~--t~e~~~e~I~~lr~~~pgi~i~td~IvGf--PGE---Teedf~eTl 368 (624)
..+..+ +..+++.. +.|+ ...+.+++.. ..+.+.+.++.+++. |+.+.+.+..-| |.+ +++.+.+.+
T Consensus 91 ~a~~aG--~~~v~i~~-~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~ 165 (302)
T 2ftp_A 91 AALESG--VKEVAVFA-AASEAFSQRNINCSIKDSLERFVPVLEAARQH--QVRVRGYISCVLGCPYDGDVDPRQVAWVA 165 (302)
T ss_dssp HHHHTT--CCEEEEEE-ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHhCC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 344432 56777655 4444 3446677753 567788889999999 999988886543 432 456667777
Q ss_pred HHHHHcCCCeEEEE
Q 006956 369 NLIKEYKFPQVHIS 382 (624)
Q Consensus 369 ~fl~el~~~~v~i~ 382 (624)
+.+.+.+.+.+.+-
T Consensus 166 ~~~~~~G~d~i~l~ 179 (302)
T 2ftp_A 166 RELQQMGCYEVSLG 179 (302)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEEe
Confidence 77779999987765
No 24
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=85.71 E-value=1.7 Score=48.94 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=52.6
Q ss_pred HHHHHhcCceeeCC--------------CCCCcEEEEeecccccc--hHHHHHHHHHHHhhCCC----CEEEEccccCcC
Q 006956 79 AGQLSAFGYALTDN--------------SEEADIWLINTCTVKSP--SQSAMDTLIAKCKSAKK----PLVVAGCVPQGS 138 (624)
Q Consensus 79 ~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~--ae~~~~~~ir~~k~~~~----~VVVgGc~aq~~ 138 (624)
+..|+..||++++. ..+||+|+| |+..+.. .-..+.++++.+++.|. +|+|||-.++
T Consensus 627 a~~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGL-SsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~t-- 703 (763)
T 3kp1_A 627 HGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILA-STIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVT-- 703 (763)
T ss_dssp TTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCC--
T ss_pred HHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCC--
Confidence 46789999999764 467999999 6666652 33567777888887763 5889997654
Q ss_pred hhh-hcCCccEEEcCCc
Q 006956 139 RDL-KELEGVSIVGVQQ 154 (624)
Q Consensus 139 ~e~-~~~~~d~VvG~~~ 154 (624)
+++ .++.+|.+.+.+.
T Consensus 704 qd~AkeIGADa~f~DAT 720 (763)
T 3kp1_A 704 PEVAVKQGVDAGFGRGS 720 (763)
T ss_dssp HHHHHTTTCSEEECTTC
T ss_pred HHHHHHcCCcEEECCcc
Confidence 454 4667788887655
No 25
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=85.64 E-value=1.1 Score=50.73 Aligned_cols=93 Identities=9% Similarity=0.052 Sum_probs=63.8
Q ss_pred CceEEEEecCCc-cChhHHHHHHHHHHhcCceeeCC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCS-HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~-~N~~Dse~~~~~L~~~G~~~~~~-------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
..++.+-++|-- .-..-...++..|+..||++++. .++||+|+| |+........+..+++.+|+
T Consensus 509 ~~kvvLatLg~Da~Hd~ga~~va~~l~~aGfeVi~~g~~~tee~v~aa~e~~adiv~l--Ssl~~~~~~~~~~v~~~Lk~ 586 (637)
T 1req_B 509 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADL--CSSAKVYAQQGLEVAKALKA 586 (637)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEE--ECCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhCCchhhhhhHHHHHHHHHhCCeeEEeCCCCCCHHHHHHHHhcCCCEEEE--ecccHHHHHHHHHHHHHHHh
Confidence 357899999953 33334568889999999999875 258999999 44333333457788888988
Q ss_pred CCC-CEEEEccccCcC----hhhhcCCccEEEcCCc
Q 006956 124 AKK-PLVVAGCVPQGS----RDLKELEGVSIVGVQQ 154 (624)
Q Consensus 124 ~~~-~VVVgGc~aq~~----~e~~~~~~d~VvG~~~ 154 (624)
.|. +|+|||- |... +++.+ .+|.++..+.
T Consensus 587 aG~~~V~vgG~-P~~d~~~~~~~~~-G~D~~~~~g~ 620 (637)
T 1req_B 587 AGAKALYLSGA-FKEFGDDAAEAEK-LIDGRLFMGM 620 (637)
T ss_dssp TTCSEEEEESC-GGGGGGGHHHHHH-HCCCEECTTC
T ss_pred CCCCeEEEeCC-CCccchhhHHHHh-ccceEecCCc
Confidence 885 6889994 3322 23445 5676776654
No 26
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=85.53 E-value=8.3 Score=39.53 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=90.7
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 295 (624)
....+.++.++-++.|.+.|++.|-+.+. ....... .+..++++.+.+ . ...++..+-+. .+. +
T Consensus 22 ~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~p~~~d~~~~~~~~~~-~-----~~~~~~~l~~~--~~~---i 87 (307)
T 1ydo_A 22 PVWIATEDKITWINQLSRTGLSYIEITSF---VHPKWIPALRDAIDVAKGIDR-E-----KGVTYAALVPN--QRG---L 87 (307)
T ss_dssp SSCCCHHHHHHHHHHHHTTTCSEEEEEEC---SCTTTCGGGTTHHHHHHHSCC-C-----TTCEEEEECCS--HHH---H
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccCCHHHHHHHhhh-c-----CCCeEEEEeCC--HHh---H
Confidence 35679999999999999999999988642 1111110 233455544432 1 22233323342 222 3
Q ss_pred HHHHhCCCcceeccccCCCCCHHH-HHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcC--CC---CCHHHHHHH
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAV-LSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PG---ETDEDFNQT 367 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~v-Lk~M~R~~--t~e~~~e~I~~lr~~~pgi~i~td~IvGf--PG---ETeedf~eT 367 (624)
...+..+ ...+++.+ +.|+.- .+.+++.. ..+.+.+.++.+++. |+.+..+++.-| |. -+.+.+.+.
T Consensus 88 ~~a~~~g--~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~~ 162 (307)
T 1ydo_A 88 ENALEGG--INEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKA--NLTTRAYLSTVFGCPYEKDVPIEQVIRL 162 (307)
T ss_dssp HHHHHHT--CSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHH
T ss_pred HHHHhCC--cCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEEEecCCcCCCCCHHHHHHH
Confidence 3333322 56677766 666643 35555542 356678889999999 999988887755 43 256778888
Q ss_pred HHHHHHcCCCeEEEE
Q 006956 368 VNLIKEYKFPQVHIS 382 (624)
Q Consensus 368 l~fl~el~~~~v~i~ 382 (624)
++.+.+.+.+.+.+-
T Consensus 163 ~~~~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 163 SEALFEFGISELSLG 177 (307)
T ss_dssp HHHHHHHTCSCEEEE
T ss_pred HHHHHhcCCCEEEEc
Confidence 888899999877664
No 27
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=81.30 E-value=11 Score=39.25 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=87.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEe-----ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcch-hHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLS-----SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-LEHL 292 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~-----g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i-~~~l 292 (624)
...+.++.++-++.|.+.|++.|-+. +...+.+|... ..-.+.++++.+..+ ...+... +.|..- .+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~-~~~~e~l~~i~~~~~---~~~i~~l-~~p~~~~~~~- 98 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGR-HTDLEYIEAVAGEIS---HAQIATL-LLPGIGSVHD- 98 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCS-SCHHHHHHHHHTTCS---SSEEEEE-ECBTTBCHHH-
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCC-CCHHHHHHHHHhhCC---CCEEEEE-ecCCcccHHH-
Confidence 46789999999999999999999883 11112233321 345678888876443 2232221 144221 222
Q ss_pred HHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 006956 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (624)
Q Consensus 293 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 372 (624)
+...... + ...+++.+ +.++ .+...+.++.++++ |+.+...+.-. |.-+++.+.+.++.+.
T Consensus 99 --i~~a~~a-G-vd~v~I~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~a-~~~~~e~~~~ia~~~~ 159 (345)
T 1nvm_A 99 --LKNAYQA-G-ARVVRVAT-HCTE-----------ADVSKQHIEYARNL--GMDTVGFLMMS-HMIPAEKLAEQGKLME 159 (345)
T ss_dssp --HHHHHHH-T-CCEEEEEE-ETTC-----------GGGGHHHHHHHHHH--TCEEEEEEEST-TSSCHHHHHHHHHHHH
T ss_pred --HHHHHhC-C-cCEEEEEE-eccH-----------HHHHHHHHHHHHHC--CCEEEEEEEeC-CCCCHHHHHHHHHHHH
Confidence 3333322 2 45555543 3332 24678889999999 99888777655 5677888999999999
Q ss_pred HcCCCeEEE
Q 006956 373 EYKFPQVHI 381 (624)
Q Consensus 373 el~~~~v~i 381 (624)
+.+.+.+.+
T Consensus 160 ~~Ga~~i~l 168 (345)
T 1nvm_A 160 SYGATCIYM 168 (345)
T ss_dssp HHTCSEEEE
T ss_pred HCCCCEEEE
Confidence 999886655
No 28
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=81.18 E-value=4.1 Score=39.56 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=51.7
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEE--eecccccchHHHHHHHHHHH
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLI--NTCTVKSPSQSAMDTLIAKC 121 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviI--NTCtv~~~ae~~~~~~ir~~ 121 (624)
..+|-+-|.+=-.-.---..++..|+..||++++- ..++|+|++ ++-. .+....+.+.++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALM--TTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSS--HHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcc--cCcHHHHHHHHHHH
Confidence 34666655443333334577888999999998764 467999999 5432 23344577778888
Q ss_pred hhCC----CCEEEEccccC
Q 006956 122 KSAK----KPLVVAGCVPQ 136 (624)
Q Consensus 122 k~~~----~~VVVgGc~aq 136 (624)
++.+ .+|++||-..+
T Consensus 170 ~~~~~~~~v~v~vGG~~~~ 188 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVS 188 (215)
T ss_dssp HHTTCGGGSEEEEESSSCC
T ss_pred HHcCCCCCCEEEEECCCCC
Confidence 7765 47999996554
No 29
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=79.37 E-value=5.3 Score=31.38 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=39.8
Q ss_pred CCCcEEEEEEEEEecCCeee---eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEE
Q 006956 423 MEGRVERIWITEIAADGIHL---GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 423 ~vG~~~~VLve~~~~~g~~~---~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
..|..+++.|+..+.+|... .-..|+++. .++|+.|.++|+.....+..|+++
T Consensus 12 ~~~~~~~~~I~~l~~~G~Gva~~~g~~vfV~~--alPGE~V~v~i~k~kk~~~~a~~~ 67 (68)
T 1yez_A 12 EEGEVYDVTIQDIARQGDGIARIEGFVIFVPG--TKVGDEVRIKVERVLPKFAFASVV 67 (68)
T ss_dssp CTTEEEEEECCEEETTTEEEEEETTEEEEEES--CCTTCEEEEEEEEECSSCEEEEEC
T ss_pred CCCCEEEEEEEEcCCCccEEEEECCEEEECcC--CCCCCEEEEEEEEecCCEEEEEEc
Confidence 45778888888877666544 223577763 479999999999998888888765
No 30
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=78.98 E-value=15 Score=37.24 Aligned_cols=146 Identities=8% Similarity=-0.037 Sum_probs=85.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
-.+.+.++.++-++.|.+.|++.|-.... .... .-.+.++++.+..+ + ..+ ..+-+.. .+.++...+
T Consensus 21 ~~~~~~~~K~~i~~~L~~~Gv~~IE~g~p---~~~~----~d~e~v~~i~~~~~--~-~~i--~~l~~~~-~~di~~a~~ 87 (293)
T 3ewb_X 21 GVNFDVKEKIQIALQLEKLGIDVIEAGFP---ISSP----GDFECVKAIAKAIK--H-CSV--TGLARCV-EGDIDRAEE 87 (293)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSEEEEECG---GGCH----HHHHHHHHHHHHCC--S-SEE--EEEEESS-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCc----cHHHHHHHHHHhcC--C-CEE--EEEecCC-HHHHHHHHH
Confidence 35689999999999999999999987642 1111 11345666766543 2 222 2221211 122222333
Q ss_pred HHhCCCcceeccccCCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~v-Lk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
.+...+ ...+++-+ |.|+.- .+.+++. ...+.+.+.++.+++. |..+..+...+. --+.+.+.+.++.+.++
T Consensus 88 ~~~~ag-~~~v~i~~-~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~~d~~-~~~~~~~~~~~~~~~~~ 162 (293)
T 3ewb_X 88 ALKDAV-SPQIHIFL-ATSDVHMEYKLKMSRAEVLASIKHHISYARQK--FDVVQFSPEDAT-RSDRAFLIEAVQTAIDA 162 (293)
T ss_dssp HHTTCS-SEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHT
T ss_pred HHhhcC-CCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC--CCEEEEEeccCC-CCCHHHHHHHHHHHHHc
Confidence 333333 56777765 555543 3445543 2345567777778887 877765554332 24567778888999999
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+.+.+.+
T Consensus 163 G~~~i~l 169 (293)
T 3ewb_X 163 GATVINI 169 (293)
T ss_dssp TCCEEEE
T ss_pred CCCEEEe
Confidence 9887654
No 31
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=77.96 E-value=5.6 Score=44.53 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=55.4
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~--------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
..+|-+-|.+=-.-..-...++..|+..||++++. ..++|+|++ |++.+.. ...+..+++++++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgL-S~l~t~~-~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGL-SGLITPS-LDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEE-ECCSTHH-HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EecCCCC-HHHHHHHHHHHHH
Confidence 34666655443333445778889999999998754 357999999 6565543 3567788888887
Q ss_pred CC--CCEEEEccccCc
Q 006956 124 AK--KPLVVAGCVPQG 137 (624)
Q Consensus 124 ~~--~~VVVgGc~aq~ 137 (624)
.+ .+|+|||-..+.
T Consensus 176 ~g~~i~ViVGGa~~~~ 191 (579)
T 3bul_A 176 QGFTIPLLIGGATTSK 191 (579)
T ss_dssp TTCCSCEEEESTTCCH
T ss_pred cCCCCeEEEEccccch
Confidence 76 689999976554
No 32
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=77.08 E-value=7.3 Score=30.85 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=39.3
Q ss_pred CCCcEEEEEEEEEecCCeee---eeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEE
Q 006956 423 MEGRVERIWITEIAADGIHL---GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 477 (624)
Q Consensus 423 ~vG~~~~VLve~~~~~g~~~---~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v 477 (624)
..|..+++.|+..+.+|... .-..|+++ ..++|+.|.++|+.....+..|+++
T Consensus 14 ~~~~~~~v~I~~l~~~G~Gva~~~g~~vfV~--~alPGE~V~v~i~k~kk~~~~a~~~ 69 (70)
T 1yvc_A 14 EAGKEYEVTIEDMGKGGDGIARIDGFVVFVP--NAEKGSVINVKVTAVKEKFAFAERV 69 (70)
T ss_dssp CTTCEEEEECCEECTTSCEEEEETTEEEEET--TCCTTCEEEEEEEEECSSCEEEEEC
T ss_pred cCCCEEEEEEEEcCCCccEEEEECCEEEEcc--CCCCCCEEEEEEEEeeCCeEEEEEe
Confidence 45778888888876655544 22346775 4579999999999998888888764
No 33
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=72.51 E-value=30 Score=35.79 Aligned_cols=144 Identities=9% Similarity=0.077 Sum_probs=86.2
Q ss_pred ccCCHHHHHHHHH-HHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHh---CCCCCCceEEEeecCCcchhHHHHH
Q 006956 219 GSYTVESLVGRVR-TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE---LPPDGSTMLRIGMTNPPFILEHLKE 294 (624)
Q Consensus 219 Rsr~~e~Iv~EI~-~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~---l~~~~~~~iri~~~~p~~i~~~l~e 294 (624)
...+.++.++-++ .|.+.|++.|-+.+.-. .. .-.+.++++.+. +. .....++...-+.. +.
T Consensus 36 ~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~---~~----~~~~~v~~~~~~~~~~~--~~~~~~i~~l~~~~--~~--- 101 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQKLNVDRVEIASARV---SK----GELETVQKIMEWAATEQ--LTERIEILGFVDGN--KT--- 101 (337)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEEETTS---CT----THHHHHHHHHHHHHHTT--CGGGEEEEEESSTT--HH---
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCCCC---Ch----hHHHHHHHHHhhhhhhc--cCCCCeEEEEccch--hh---
Confidence 4589999999999 99999999998764311 11 113555555541 11 12234444343321 12
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC---CCHHHHHHHHH
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPG---ETDEDFNQTVN 369 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG---ETeedf~eTl~ 369 (624)
+...+..+ ...+++-+-+.+-...+.+++. ...+.+.+.++.+++. |+.+..++.. ||. -+.+.+.+.++
T Consensus 102 i~~a~~~g--~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~~ 176 (337)
T 3ble_A 102 VDWIKDSG--AKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKS--GLKINVYLED-WSNGFRNSPDYVKSLVE 176 (337)
T ss_dssp HHHHHHHT--CCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHT--TCEEEEEEET-HHHHHHHCHHHHHHHHH
T ss_pred HHHHHHCC--CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEE-CCCCCcCCHHHHHHHHH
Confidence 22223222 4556664443333445666664 2456777888888998 9888877764 222 24566777778
Q ss_pred HHHHcCCCeEEE
Q 006956 370 LIKEYKFPQVHI 381 (624)
Q Consensus 370 fl~el~~~~v~i 381 (624)
.+.+++.+.+.+
T Consensus 177 ~~~~~Ga~~i~l 188 (337)
T 3ble_A 177 HLSKEHIERIFL 188 (337)
T ss_dssp HHHTSCCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 888889887665
No 34
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=71.81 E-value=16 Score=36.74 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=86.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
+..+.+.+++.++.+++.|..-|.+.++.. ..+....+..+++.+.+.. ...+.+.+.+|..+.. ..+.
T Consensus 29 ~~~~~~~a~~~a~~~v~~GAdiIDIg~~s~---~~eE~~rv~~vi~~l~~~~----~~pisIDT~~~~v~~a----al~a 97 (271)
T 2yci_X 29 LNKDPRPIQEWARRQAEKGAHYLDVNTGPT---ADDPVRVMEWLVKTIQEVV----DLPCCLDSTNPDAIEA----GLKV 97 (271)
T ss_dssp HTTCCHHHHHHHHHHHHTTCSEEEEECCSC---SSCHHHHHHHHHHHHHHHC----CCCEEEECSCHHHHHH----HHHH
T ss_pred hhCCHHHHHHHHHHHHHCCCCEEEEcCCcC---chhHHHHHHHHHHHHHHhC----CCeEEEeCCCHHHHHH----HHHh
Confidence 446779999999999999999888776531 1222235667777777643 3567777665542221 1121
Q ss_pred HhCCCcceeccccCCCCC--HHHHHh----------hc---CC--CC----HHHHHHHHHHHHHhCCCCE---EEEEEEE
Q 006956 299 LRHPCVYSFLHVPVQSGS--DAVLSA----------MN---RE--YT----LSDFRTVVDTLIELVPGMQ---IATDIIC 354 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgs--d~vLk~----------M~---R~--~t----~e~~~e~I~~lr~~~pgi~---i~td~Iv 354 (624)
.....+.+.++.. . + ++++.. |. ++ .+ .+.+.+.++.+.++ |+. +..|-.+
T Consensus 98 ~~Ga~iINdvs~~--~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~--Gi~~~~IilDPg~ 172 (271)
T 2yci_X 98 HRGHAMINSTSAD--Q-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAH--GIPMTELYIDPLI 172 (271)
T ss_dssp CCSCCEEEEECSC--H-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHT--TCCGGGEEEECCC
T ss_pred CCCCCEEEECCCC--c-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEecCC
Confidence 1122233434322 1 2 344433 11 22 23 55667788888888 876 8899999
Q ss_pred cCCCCCHHHHHHHHHHHHHcC
Q 006956 355 GFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 355 GfPGETeedf~eTl~fl~el~ 375 (624)
||.|-+.+.-.++++.++.++
T Consensus 173 gfigk~~~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 173 LPVNVAQEHAVEVLETIRQIK 193 (271)
T ss_dssp CCTTTSTHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHH
Confidence 998888877767777776664
No 35
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=69.52 E-value=43 Score=28.99 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCceeeCC-CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCc-ChhhhcCCccEEEc
Q 006956 74 DSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVG 151 (624)
Q Consensus 74 Dse~~~~~L~~~G~~~~~~-~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~-~~e~~~~~~d~VvG 151 (624)
+-+.+.++|.+.||+..+. ...+|+++| -++..+....-+...|+.+++.|++|+.--+|.+. .|..-.-.++.++|
T Consensus 16 ~~~~L~~~l~~~~f~~~~~~I~~~~~vIv-L~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~l~~~a~~iV~ 94 (111)
T 1eiw_A 16 DYRVFLERLEQSGLEWRPATPEDADAVIV-LAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPELEAVSSEVVG 94 (111)
T ss_dssp HHHHHHHHHHHHCSCEEECCSSSCSEEEE-EGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTTHHHHCSEEEC
T ss_pred HHHHHHHHHhCCCCeeecCccccCCEEEE-EeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHHHHhhCceecc
Confidence 6888999998779987763 567999988 55665544456677788899999998865555542 23211112678999
Q ss_pred CCchhHHHHHHHHHh
Q 006956 152 VQQIDRVVEVVEETL 166 (624)
Q Consensus 152 ~~~~~~l~ell~~~~ 166 (624)
-.. +.|.+.+....
T Consensus 95 Wn~-~~I~~aI~~~~ 108 (111)
T 1eiw_A 95 WNP-HCIRDALEDAL 108 (111)
T ss_dssp SCH-HHHHHHHHHHH
T ss_pred CCH-HHHHHHHHhcc
Confidence 986 67888887653
No 36
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=66.67 E-value=30 Score=36.40 Aligned_cols=146 Identities=11% Similarity=0.027 Sum_probs=81.5
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
..+.+.++-++-++.|.+.|++.|-.... .... .=.+.++++.+.++ + ..+.. ...+. .+.++...+
T Consensus 28 ~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p---~~~~----~d~e~v~~i~~~~~--~-~~i~~-l~r~~--~~di~~a~~ 94 (370)
T 3rmj_A 28 GAAMTKEEKIRVARQLEKLGVDIIEAGFA---AASP----GDFEAVNAIAKTIT--K-STVCS-LSRAI--ERDIRQAGE 94 (370)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEEEEG---GGCH----HHHHHHHHHHTTCS--S-SEEEE-EEESS--HHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeCC---CCCH----HHHHHHHHHHHhCC--C-CeEEE-EecCC--HHHHHHHHH
Confidence 35789999999999999999999887532 1111 11355666665443 2 22221 12221 122222223
Q ss_pred HHhCCCcceeccccCCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~-vLk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
.+...+ ...+++-+ |.|+- ..+.+++. ...+.+.+.++.++++ |..+..+...+. --+.+.+.+.++.+.+.
T Consensus 95 al~~ag-~~~v~if~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~ed~~-r~~~~~~~~~~~~~~~~ 169 (370)
T 3rmj_A 95 AVAPAP-KKRIHTFI-ATSPIHMEYKLKMKPKQVIEAAVKAVKIAREY--TDDVEFSCEDAL-RSEIDFLAEICGAVIEA 169 (370)
T ss_dssp HHTTSS-SEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHH
T ss_pred HHhhCC-CCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEecCCCC-ccCHHHHHHHHHHHHHc
Confidence 333333 56777755 44543 44556553 2344555566777777 665443333222 23456667778888888
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+.+.+.+
T Consensus 170 Ga~~i~l 176 (370)
T 3rmj_A 170 GATTINI 176 (370)
T ss_dssp TCCEEEE
T ss_pred CCCEEEe
Confidence 9887664
No 37
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=66.13 E-value=29 Score=35.06 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=81.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~------~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~ 291 (624)
.+..+++.+++.++.+++.|+.-|.+.++.+. -|.+. ..++..+++.+.+.. ...+.+.+.+|..+..
T Consensus 32 g~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-Pga~~v~~~eE~~rv~pvi~~l~~~~----~~piSIDT~~~~va~a- 105 (282)
T 1aj0_A 32 GTHNSLIDAVKHANLMINAGATIIDVGGESTR-PGAAEVSVEEELQRVIPVVEAIAQRF----EVWISVDTSKPEVIRE- 105 (282)
T ss_dssp CCCTHHHHHHHHHHHHHHHTCSEEEEESSCCS-TTCCCCCHHHHHHHHHHHHHHHHHHC----CCEEEEECCCHHHHHH-
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCcCCHHHHHHHHHHHHHHHHhhc----CCeEEEeCCCHHHHHH-
Confidence 34567999999999999999999888775431 12111 124556666665542 3567777655532221
Q ss_pred HHHHHHHHh-CCCcceeccccCCCCCHHHHHh-------------------hcCC--CC------HHHHHHHHHHHHHhC
Q 006956 292 LKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSA-------------------MNRE--YT------LSDFRTVVDTLIELV 343 (624)
Q Consensus 292 l~el~~l~~-~~~v~~~l~IGlQSgsd~vLk~-------------------M~R~--~t------~e~~~e~I~~lr~~~ 343 (624)
.++ ...+.+.++-+ .+++++.. |... |. .+.+.+.++.+.++
T Consensus 106 ------Al~aGa~iINdvsg~---~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~- 175 (282)
T 1aj0_A 106 ------SAKVGAHIINDIRSL---SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQA- 175 (282)
T ss_dssp ------HHHTTCCEEEETTTT---CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHT-
T ss_pred ------HHHcCCCEEEECCCC---CCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHc-
Confidence 111 12233333322 33344322 1111 11 56778888888888
Q ss_pred CCCE---EEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 344 PGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 344 pgi~---i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
|+. +..|--+|| +.|.++-.++++.+.++
T Consensus 176 -Gi~~~~IilDPg~gf-~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 176 -GIAKEKLLLDPGFGF-GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp -TCCGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred -CCChhhEEEeCCCCc-ccCHHHHHHHHHHHHHH
Confidence 875 888988888 77777665565555544
No 38
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=64.05 E-value=8.4 Score=41.29 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=42.1
Q ss_pred CCcEEEEEEEEEecCCeeeeeEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEecccccc
Q 006956 424 EGRVERIWITEIAADGIHLGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 484 (624)
Q Consensus 424 vG~~~~VLve~~~~~g~~~~y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~~ 484 (624)
.|+++++.|+....+|....+ .|+++ ..++|+.|+|+|++..+.+..|++++..+.-.
T Consensus 17 ~~~~~~~~I~~l~~~G~Gv~~-~vfV~--~alPGe~v~~~i~~~k~~~~~a~~~~v~~~S~ 74 (425)
T 2jjq_A 17 RGSHMRGVIRKLNDDGFGVLK-GILVP--FSAPGDEIIVERVERVKKRRVASQWKLVRSSP 74 (425)
T ss_dssp ----CEEECCEECTTSCEEET-TEEET--TCCTTCEEEEEEEEESSSSEEEEEEEEEECCT
T ss_pred CCCEEEEEEEEeccCCeEEEE-EEEeC--CCCCCCEEEEEEEEecCCceEEEEcccCCCCc
Confidence 466677888888766665555 67775 45899999999999999999999887754433
No 39
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=64.03 E-value=23 Score=37.77 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=42.4
Q ss_pred cEEEEEEEEEecCCeeee---eEEEEEcCCCCCCCCEEEEEEEEEecceEEEEEEeccccc
Q 006956 426 RVERIWITEIAADGIHLG---YVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 483 (624)
Q Consensus 426 ~~~~VLve~~~~~g~~~~---y~~V~~~~~~~~~G~~v~V~I~~~~~~~l~g~~v~~~~~~ 483 (624)
..+++-|+..+.+|.... -..|+++ ..++|+.|.|+|++..+.+..|++++..+.-
T Consensus 15 ~~~~~~i~~l~~~G~Gv~~~~g~~vfV~--~alpGe~v~~~i~~~~~~~~~~~~~~i~~~S 73 (433)
T 1uwv_A 15 QIITVSVNDLDSFGQGVARHNGKTLFIP--GLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 (433)
T ss_dssp CCEEEEEEEECTTSEEEEEETTEEEEEE--TCCTTCEEEEEEEEECSSEEEEEEEEECCCC
T ss_pred CEEEEEEEEecCCCceEEEeCCEEEEcC--CCCCCCEEEEEEEeecCCceeEEeccccCCC
Confidence 456788888876665542 2357775 4579999999999999999999998876543
No 40
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=63.64 E-value=24 Score=36.39 Aligned_cols=144 Identities=12% Similarity=-0.024 Sum_probs=81.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
.+.+.++-++-++.|.+.|++.|-... +.... .+ .+.++++.+.++ + . ++..+-+.. .+.++...+.
T Consensus 23 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~~---~d-~e~v~~i~~~~~--~-~--~i~~l~r~~-~~~i~~a~~a 89 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGF---PVSSP---GD-FNSVVEITKAVT--R-P--TICALTRAK-EADINIAGEA 89 (325)
T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEEC---TTSCH---HH-HHHHHHHHHHCC--S-S--EEEEECCSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH---hH-HHHHHHHHHhCC--C-C--EEEEeecCC-HHHHHHHHHh
Confidence 467889999999999999999988753 22111 11 345577766553 2 2 233222211 1222222333
Q ss_pred HhCCCcceeccccCCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcC
Q 006956 299 LRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~v-Lk~M~R~--~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 375 (624)
+...+ ...+++-+ |.|+-- .+.+++. ...+.+.+.++.+++. |+.+..+...+.. -+.+.+.+.++.+.+.+
T Consensus 90 l~~ag-~~~v~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~~d~~~-~~~~~~~~~~~~~~~~G 164 (325)
T 3eeg_A 90 LRFAK-RSRIHTGI-GSSDIHIEHKLRSTRENILEMAVAAVKQAKKV--VHEVEFFCEDAGR-ADQAFLARMVEAVIEAG 164 (325)
T ss_dssp HTTCS-SEEEEEEE-ECSHHHHC----CCCTTGGGTTHHHHHHHHTT--SSEEEEEEETGGG-SCHHHHHHHHHHHHHHT
T ss_pred hcccC-CCEEEEEe-cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEcccccc-chHHHHHHHHHHHHhcC
Confidence 33323 56666644 345543 3445543 5678889999999998 8876544333321 24566677777788888
Q ss_pred CCeEE
Q 006956 376 FPQVH 380 (624)
Q Consensus 376 ~~~v~ 380 (624)
.+.+.
T Consensus 165 ~~~i~ 169 (325)
T 3eeg_A 165 ADVVN 169 (325)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 87654
No 41
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=62.65 E-value=4.5 Score=25.92 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=10.5
Q ss_pred cccccCCCCCCcccC
Q 006956 511 SSACSNEPDPSACGL 525 (624)
Q Consensus 511 ~~~~~~~~~~~~~~~ 525 (624)
.|.||. .++|.|+.
T Consensus 2 ~CgCs~-tgtC~Cg~ 15 (26)
T 1t2y_A 2 DCGCSG-ASSCNCGS 15 (26)
T ss_dssp CCSCSS-TTTCCCSS
T ss_pred CcccCC-CccccCCC
Confidence 577877 78888873
No 42
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=61.43 E-value=63 Score=34.56 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=85.2
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
..+.+.++-++-++.|.+.|+++|-... +... +...+.++.+.+. . ....+ +....+. .+. +..
T Consensus 55 ~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~as----p~d~~~~~~i~~~-~--~~~~v-~~~~r~~--~~d---i~~ 118 (423)
T 3ivs_A 55 NAFFDTEKKIQIAKALDNFGVDYIELTS---PVAS----EQSRQDCEAICKL-G--LKCKI-LTHIRCH--MDD---ARV 118 (423)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTS-C--CSSEE-EEEEESC--HHH---HHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEee---cccC----HHHHHHHHHHHhc-C--CCCEE-EEeeccC--hhh---HHH
Confidence 4578999999999999999999998753 2221 1234566666542 1 11222 1222332 112 333
Q ss_pred HHhCCCcceeccccCCCCCHHHH-HhhcC--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vL-k~M~R--~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
.+..+ ...+++-+= .|+--. ..+++ ....+.+.+.++.+++. |+.+..+..-+| .-+++.+.+.++.+.+.
T Consensus 119 A~~aG--~~~V~i~~s-~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~V~~~~eda~-r~d~~~~~~v~~~~~~~ 192 (423)
T 3ivs_A 119 AVETG--VDGVDVVIG-TSQYLRKYSHGKDMTYIIDSATEVINFVKSK--GIEVRFSSEDSF-RSDLVDLLSLYKAVDKI 192 (423)
T ss_dssp HHHTT--CSEEEEEEE-C-------------CHHHHHHHHHHHHHHTT--TCEEEEEEESGG-GSCHHHHHHHHHHHHHH
T ss_pred HHHcC--CCEEEEEee-ccHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEccCc-CCCHHHHHHHHHHHHHh
Confidence 33332 456666553 343222 22333 23467788899999999 999888877776 35678888889999999
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
+.+.+.+
T Consensus 193 Ga~~i~l 199 (423)
T 3ivs_A 193 GVNRVGI 199 (423)
T ss_dssp CCSEEEE
T ss_pred CCCcccc
Confidence 9887654
No 43
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=57.19 E-value=54 Score=33.34 Aligned_cols=139 Identities=14% Similarity=0.221 Sum_probs=80.1
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-c--cC---CHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-I--GV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d-~--~~---~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 293 (624)
..+++.+++.++.+++.|..-|.+.++.+-. |.. . .+ ++..+++.+.+.. ...+.+.+.+|..+..
T Consensus 59 ~~~~~~a~~~a~~~v~~GAdiIDIGgeStrP-ga~~v~~~eE~~RvvpvI~~l~~~~----~vpiSIDT~~~~V~~a--- 130 (297)
T 1tx2_A 59 YNEVDAAVRHAKEMRDEGAHIIDIGGESTRP-GFAKVSVEEEIKRVVPMIQAVSKEV----KLPISIDTYKAEVAKQ--- 130 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEESCC-----CCCCCHHHHHHHHHHHHHHHHHHS----CSCEEEECSCHHHHHH---
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CceEEEeCCCHHHHHH---
Confidence 4568999999999999999988887754321 211 1 12 2344446665542 3567777665543222
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhc-----------CC---C------CHHHHHHHHHHHHHhCCCCE---EEE
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-----------RE---Y------TLSDFRTVVDTLIELVPGMQ---IAT 350 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~-----------R~---~------t~e~~~e~I~~lr~~~pgi~---i~t 350 (624)
..+. ...+.+.++-+ ..+++++..+. ++ | ..+.+.+.++.+.++ |+. +..
T Consensus 131 -Al~a--Ga~iINdvsg~--~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~--GI~~~~Iil 203 (297)
T 1tx2_A 131 -AIEA--GAHIINDIWGA--KAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA--GVRDENIIL 203 (297)
T ss_dssp -HHHH--TCCEEEETTTT--SSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHT--TCCGGGEEE
T ss_pred -HHHc--CCCEEEECCCC--CCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHc--CCChhcEEE
Confidence 1111 22334444332 23556654321 11 1 035677788888888 876 888
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 351 DIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 351 d~IvGfPGETeedf~eTl~fl~el 374 (624)
|--+|| +-|.++-.++++.+.++
T Consensus 204 DPg~Gf-gk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 204 DPGIGF-AKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp ECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred eCCCCc-CCCHHHHHHHHHHHHHH
Confidence 888888 77777655555555544
No 44
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=54.77 E-value=10 Score=38.30 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcChhhhcCCccEEEcC--CchhHHHHHH
Q 006956 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV--QQIDRVVEVV 162 (624)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~e~~~~~~d~VvG~--~~~~~l~ell 162 (624)
++||+|+|+..|+.+.+- ..+++..+ ..+.+|+.|+.+...|++.+..++.+-|. .+.+.+.+.+
T Consensus 185 ~~aD~viiTGsTlvN~Ti---~~lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i 251 (270)
T 2h1q_A 185 PECDYVYITCASVVDKTL---PRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIV 251 (270)
T ss_dssp GGCSEEEEETHHHHHTCH---HHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHH
T ss_pred hcCCEEEEEeeeeecCCH---HHHHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHH
Confidence 579999998888887654 44455553 34589999999999998655555654443 2334444444
No 45
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=54.17 E-value=6.5 Score=39.71 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcChhhhcCCccEEEcC--CchhHHHHHH
Q 006956 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV--QQIDRVVEVV 162 (624)
Q Consensus 94 ~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~e~~~~~~d~VvG~--~~~~~l~ell 162 (624)
.+||+|+|+..|+.+.+- ..+++.. +....||+.|+.++..|++.+..++.+-|. .+.+.+.+.+
T Consensus 185 p~~D~viiTgstlvN~Tl---~~lL~~~-~~a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i 251 (270)
T 3l5o_A 185 PECDYVYITCASVVDKTL---PRLLELS-RNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIV 251 (270)
T ss_dssp GGCSEEEEETHHHHHTCH---HHHHHHT-TTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHH
T ss_pred ccCCEEEEEeehhhcCCH---HHHHhhC-CCCCEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHH
Confidence 569999998888887654 3444444 234568899999999998655555544443 2333444444
No 46
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=53.13 E-value=1e+02 Score=31.04 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=74.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---CccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~---d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 295 (624)
+..+++.+++.++.+++.|..-|.+.++.+. -|. +....+..++..+..... ....+.+.+.+|..+..
T Consensus 24 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-pga~~v~~~eE~~Rv~pvi~~l~~--~~~piSIDT~~~~va~a----- 95 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSR-PGATRVDPAVETSRVIPVVKELAA--QGITVSIDTMRADVARA----- 95 (280)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHH--TTCCEEEECSCHHHHHH-----
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCccCC-CCCCCCCHHHHHHHHHHHHHHhhc--CCCEEEEeCCCHHHHHH-----
Confidence 4568999999999999999999888775432 121 111334444433332111 13456776555432211
Q ss_pred HHHHhC-CCcceeccccCCCCCHHHHHh-------------------hcCC---C-C-----HHHHHHHHHHHHHhCCCC
Q 006956 296 AEVLRH-PCVYSFLHVPVQSGSDAVLSA-------------------MNRE---Y-T-----LSDFRTVVDTLIELVPGM 346 (624)
Q Consensus 296 ~~l~~~-~~v~~~l~IGlQSgsd~vLk~-------------------M~R~---~-t-----~e~~~e~I~~lr~~~pgi 346 (624)
.++. ..+.+.++-+ ..+++++.. |... | + .+.+.+.++.+.++ |+
T Consensus 96 --Al~aGa~iINdvsg~--~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~--Gi 169 (280)
T 1eye_A 96 --ALQNGAQMVNDVSGG--RADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA--GV 169 (280)
T ss_dssp --HHHTTCCEEEETTTT--SSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT--TC
T ss_pred --HHHcCCCEEEECCCC--CCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc--CC
Confidence 1111 1223333221 123344332 1111 1 1 55677888888888 87
Q ss_pred E---EEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 347 Q---IATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 347 ~---i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
. +..|=-+|| +.|.++-.++++.+.++
T Consensus 170 ~~~~IilDPg~Gf-~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 170 DPARLVLDPGLGF-AKTAQHNWAILHALPEL 199 (280)
T ss_dssp CGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred ChhhEEEECCCCc-ccCHHHHHHHHHHHHHh
Confidence 5 888888888 55766655666665554
No 47
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=51.48 E-value=1.8e+02 Score=31.35 Aligned_cols=136 Identities=8% Similarity=0.112 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCC-----CCCCCccCCHHHHHHHHHHhCCCCCCceEEEee--------c-CC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTG-----AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM--------T-NP 285 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~-----~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~--------~-~p 285 (624)
..+.++.++-++.|.+.|+..|-..+.-.+ ..+ .+-.+.++.+.+.++ + ..+.... . .|
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~----~d~~e~l~~i~~~~~--~-~~l~~l~R~~N~~G~~~~~ 98 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLG----EDPWQRLRLLKQAMP--N-TPLQMLLRGQNLLGYRHYA 98 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTC----CCHHHHHHHHHHHCS--S-SCEEEEECGGGTTSSSCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccC----CCHHHHHHHHHHhCC--C-CeEEEEeccccccCccccc
Confidence 467788888888898999999988764210 011 234677888877554 2 2222111 0 13
Q ss_pred cchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHH
Q 006956 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDED 363 (624)
Q Consensus 286 ~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGETeed 363 (624)
+.+.+.. +......+ ...+++-. +.|+- +.+.+.++.+++. |..+..++ ..|.+ -+.+.
T Consensus 99 ddv~~~~--v~~a~~~G--vd~i~if~-~~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~ 159 (464)
T 2nx9_A 99 DDVVDTF--VERAVKNG--MDVFRVFD-AMNDV-----------RNMQQALQAVKKM--GAHAQGTLCYTTSPV-HNLQT 159 (464)
T ss_dssp HHHHHHH--HHHHHHTT--CCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCCTT-CCHHH
T ss_pred chhhHHH--HHHHHhCC--cCEEEEEE-ecCHH-----------HHHHHHHHHHHHC--CCEEEEEEEeeeCCC-CCHHH
Confidence 3332221 33333332 34444422 33332 4577899999999 98887777 44544 47899
Q ss_pred HHHHHHHHHHcCCCeEEE
Q 006956 364 FNQTVNLIKEYKFPQVHI 381 (624)
Q Consensus 364 f~eTl~fl~el~~~~v~i 381 (624)
+.+.++.+.+.+.+.+.+
T Consensus 160 ~~~~a~~l~~~Gad~I~l 177 (464)
T 2nx9_A 160 WVDVAQQLAELGVDSIAL 177 (464)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEE
Confidence 999999999999987665
No 48
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=50.90 E-value=1.2e+02 Score=31.68 Aligned_cols=140 Identities=8% Similarity=0.081 Sum_probs=82.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
.+.+.++.++-++.|.+.|++.|-... +... +...+.++.+.+... . ..+....... .+. +...
T Consensus 20 ~~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~----~~~~~~~~~i~~~~~---~--~~v~~~~r~~-~~d---i~~a 83 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDEFGIEYIEVTT---PVAS----PQSRKDAEVLASLGL---K--AKVVTHIQCR-LDA---AKVA 83 (382)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCC---S--SEEEEEEESC-HHH---HHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEcC---CcCC----HHHHHHHHHHHhcCC---C--cEEEEEcccC-hhh---HHHH
Confidence 478899999999999999999998753 2221 223566677665321 1 2222211111 122 3333
Q ss_pred HhCCCcceeccccCCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhCCC--CEEEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vLk~M~R~~--t~e~~~e~I~~lr~~~pg--i~i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+..+ ...+++-+ +.|+-..+.+++.. ..+.+.+.++.+++. | +.+..++.-++ .-+.+.+.+.++.+.+.
T Consensus 84 ~~~g--~~~v~i~~-~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~--g~~~~v~~~~ed~~-~~~~~~~~~~~~~~~~~ 157 (382)
T 2ztj_A 84 VETG--VQGIDLLF-GTSKYLRAPHGRDIPRIIEEAKEVIAYIREA--APHVEVRFSAEDTF-RSEEQDLLAVYEAVAPY 157 (382)
T ss_dssp HHTT--CSEEEEEE-CC--------CCCHHHHHHHHHHHHHHHHHH--CTTSEEEEEETTTT-TSCHHHHHHHHHHHGGG
T ss_pred HHcC--CCEEEEEe-ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEEEEEeCC-CCCHHHHHHHHHHHHHh
Confidence 3332 45666654 56664444333321 235578889999999 8 88888887654 55678888888988888
Q ss_pred CCCeEEE
Q 006956 375 KFPQVHI 381 (624)
Q Consensus 375 ~~~~v~i 381 (624)
.+.+.+
T Consensus 158 -a~~i~l 163 (382)
T 2ztj_A 158 -VDRVGL 163 (382)
T ss_dssp -CSEEEE
T ss_pred -cCEEEe
Confidence 876655
No 49
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=50.43 E-value=2e+02 Score=31.73 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=80.6
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCccCCHHHHHHHHHHhCCCCCCceEEEee--------c-CCcchh
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGM--------T-NPPFIL 289 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg-~d~~~~l~eLL~~l~~~l~~~~~~~iri~~--------~-~p~~i~ 289 (624)
..+.++.++-++.|.+.|++.|-..+.-.+... +-...+-.+.++.+.+.++ + ..+.... . .|+.+.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~--~-~~l~~L~R~~N~~G~~~ypddv~ 119 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMP--N-SRLQMLLRGQNLLGYRHYNDEVV 119 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCT--T-SCEEEEECGGGTTSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCC--C-CEEEEEeccccccCcccCccccc
Confidence 567888888899999999999988764220000 0001234677888876554 2 2222211 1 123232
Q ss_pred HHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHHHHHH
Q 006956 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQT 367 (624)
Q Consensus 290 ~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~--IvGfPGETeedf~eT 367 (624)
+.. +......+ ...+++-. +.|+- +.+.+.++.+++. |..+...+ ..|.+ -+.+.+.+.
T Consensus 120 ~~~--ve~a~~aG--vd~vrIf~-s~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~~~~~ 180 (539)
T 1rqb_A 120 DRF--VDKSAENG--MDVFRVFD-AMNDP-----------RNMAHAMAAVKKA--GKHAQGTICYTISPV-HTVEGYVKL 180 (539)
T ss_dssp HHH--HHHHHHTT--CCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCSTT-CCHHHHHHH
T ss_pred HHH--HHHHHhCC--CCEEEEEE-ehhHH-----------HHHHHHHHHHHHC--CCeEEEEEEeeeCCC-CCHHHHHHH
Confidence 222 33333332 34444422 33332 4567888888888 87776555 44543 478888888
Q ss_pred HHHHHHcCCCeEEE
Q 006956 368 VNLIKEYKFPQVHI 381 (624)
Q Consensus 368 l~fl~el~~~~v~i 381 (624)
++.+.+.+.+.+.+
T Consensus 181 a~~l~~~Gad~I~L 194 (539)
T 1rqb_A 181 AGQLLDMGADSIAL 194 (539)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEe
Confidence 88888888876654
No 50
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=46.80 E-value=61 Score=32.95 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---CccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~---d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 295 (624)
+..+.+.+++.++.+++.|..-|.+.++.+.. |. +..+.+..++..+..... ....+.+.+.+|..+..-+
T Consensus 47 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-ga~~v~~~eE~~Rv~pvI~~l~~--~~vpiSIDT~~~~Va~aAl--- 120 (294)
T 2dqw_A 47 RYLDPERALERAREMVAEGADILDLGAESTRP-GAAPVPVEEEKRRLLPVLEAVLS--LGVPVSVDTRKPEVAEEAL--- 120 (294)
T ss_dssp ------CCHHHHHHHHHHTCSEEEEECC------------CCHHHHHHHHHHHHHT--TCSCEEEECSCHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEECCCHHHHHHHH---
Confidence 44678999999999999999988887754321 21 111334444443333211 1356777765554222111
Q ss_pred HHHHhCCCcceeccccCCCCCHHHHHh----------hc-C-----------CCC------HHHHHHHHHHHHHhCCCCE
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVLSA----------MN-R-----------EYT------LSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vLk~----------M~-R-----------~~t------~e~~~e~I~~lr~~~pgi~ 347 (624)
+. -..+.+.++-+ .+++++.. |. + .|. .+.+.+.++.+.++ |+.
T Consensus 121 -~a--Ga~iINdVsg~---~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~--Gi~ 192 (294)
T 2dqw_A 121 -KL--GAHLLNDVTGL---RDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSA--GVP 192 (294)
T ss_dssp -HH--TCSEEECSSCS---CCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHT--TCS
T ss_pred -Hh--CCCEEEECCCC---CChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHC--CCC
Confidence 10 11222333222 33444322 11 1 121 45677788888888 774
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 348 -IATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 348 -i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+..|--+|| +.|.++-.++++.+.++
T Consensus 193 ~IilDPG~Gf-~kt~~~n~~ll~~l~~~ 219 (294)
T 2dqw_A 193 QVVLDPGFGF-GKLLEHNLALLRRLDEI 219 (294)
T ss_dssp CEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred cEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 555655677 77887766777766655
No 51
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=45.97 E-value=1.2e+02 Score=31.88 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc---CCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
.+++++.++++.+++.|++.|.+.|.+...+ .+.. ..-.+.++++++.++ ....+++. .|...-.+...++.+
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~-~~~~~~~~~d~e~v~avR~avG--~d~~L~vD-aN~~~~~~~A~~~~~ 199 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKLNGCEEMGI-IDTSRAVDAAVARVAEIRSAFG--NTVEFGLD-FHGRVSAPMAKVLIK 199 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEESCCSSSC-BCSHHHHHHHHHHHHHHHHTTG--GGSEEEEE-CCSCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcccc-cccchhHHHHHHHHHHHHHHhC--CCceEEEE-CCCCCCHHHHHHHHH
Confidence 4689999999999999999999865421111 0100 122567777777664 45567766 343322233333444
Q ss_pred HHhCCCcceeccccCCCCCHHHHHhhcC
Q 006956 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd~vLk~M~R 325 (624)
.+...+ ..+|.=|+-..+-..++.+++
T Consensus 200 ~L~~~~-i~~iEeP~~~~d~~~~~~l~~ 226 (405)
T 3rr1_A 200 ELEPYR-PLFIEEPVLAEQAETYARLAA 226 (405)
T ss_dssp HHGGGC-CSCEECSSCCSSTHHHHHHHT
T ss_pred HHHhcC-CCEEECCCCcccHHHHHHHHh
Confidence 444333 456666665444444544443
No 52
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=44.97 E-value=1e+02 Score=30.49 Aligned_cols=141 Identities=10% Similarity=0.059 Sum_probs=72.7
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 297 (624)
.+..+++.+++.++.+++.|..-|.+.+. +-..+..+.+..++..+.+. ....+.+.+.+|..+.. -.+
T Consensus 19 g~~~~~~~a~~~a~~~v~~GAdiIDIg~g---~~~v~~~ee~~rvv~~i~~~----~~~pisIDT~~~~v~~a----Al~ 87 (262)
T 1f6y_A 19 IQERDPAPVQEWARRQEEGGARALDLNVG---PAVQDKVSAMEWLVEVTQEV----SNLTLCLDSTNIKAIEA----GLK 87 (262)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCSEEEEBCC-------CHHHHHHHHHHHHHTT----CCSEEEEECSCHHHHHH----HHH
T ss_pred hhcCCHHHHHHHHHHHHHCCCcEEEECCC---CCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCHHHHHH----HHh
Confidence 34568999999999999999987776552 11112123455555555442 23567777655532221 111
Q ss_pred HHhCCCcceeccccCCCCCH--HHHHh----------hc---CC--CC----HHHHHHHHHHHHHhCCCCE---EEEEEE
Q 006956 298 VLRHPCVYSFLHVPVQSGSD--AVLSA----------MN---RE--YT----LSDFRTVVDTLIELVPGMQ---IATDII 353 (624)
Q Consensus 298 l~~~~~v~~~l~IGlQSgsd--~vLk~----------M~---R~--~t----~e~~~e~I~~lr~~~pgi~---i~td~I 353 (624)
......+.+.++-+ + ++ +++.. |. ++ .+ .+-+.+.++.+.++ |+. +..|=.
T Consensus 88 a~~Ga~iINdvs~~-~--d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~--Gi~~~~IilDPg 162 (262)
T 1f6y_A 88 KCKNRAMINSTNAE-R--EKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEF--GLPMEDLYIDPL 162 (262)
T ss_dssp HCSSCEEEEEECSC-H--HHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHH--TCCGGGEEEECC
T ss_pred hCCCCCEEEECCCC-c--ccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEeCC
Confidence 10012223333322 1 11 22221 11 11 12 24456777888888 874 888888
Q ss_pred EcCCCCCHHHHHHHHHHHHHc
Q 006956 354 CGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 354 vGfPGETeedf~eTl~fl~el 374 (624)
+|..|-+.++-.++++.+..+
T Consensus 163 ~g~~g~~~~~~~~~l~~l~~l 183 (262)
T 1f6y_A 163 ILPANVAQDHAPEVLKTLQQI 183 (262)
T ss_dssp CCCTTTCTTHHHHHHHHHHHH
T ss_pred CCcCCCChHHHHHHHHHHHHH
Confidence 775565554444444444443
No 53
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=44.02 E-value=1.3e+02 Score=30.51 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=76.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~---~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 295 (624)
+..+++.+++.++.+++.|+.-|.+.++.+.. |.+. .+.+..++..+..... ....+.+.+.+|..+..-+
T Consensus 41 ~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrP-ga~~v~~~eE~~Rv~pvi~~l~~--~~vpiSIDT~~~~Va~aAl--- 114 (294)
T 2y5s_A 41 RFLARDDALRRAERMIAEGADLLDIGGESTRP-GAPPVPLDEELARVIPLVEALRP--LNVPLSIDTYKPAVMRAAL--- 114 (294)
T ss_dssp ---CTTHHHHHHHHHHHTTCSEEEEESSCCST-TCCCCCHHHHHHHHHHHHHHHGG--GCSCEEEECCCHHHHHHHH---
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHhh--CCCeEEEECCCHHHHHHHH---
Confidence 34578999999999999999988887754322 2111 1223444443333211 1346777766654322211
Q ss_pred HHHHhCCCcceeccccCCCCCHHHHHhhcC----------------------CCC------HHHHHHHHHHHHHhCCCCE
Q 006956 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----------------------EYT------LSDFRTVVDTLIELVPGMQ 347 (624)
Q Consensus 296 ~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R----------------------~~t------~e~~~e~I~~lr~~~pgi~ 347 (624)
+. -..+.+-++-+ . +++++....+ .|. .+.+.+.++.+.++ |+.
T Consensus 115 -~a--Ga~iINdVsg~--~-d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~--Gi~ 186 (294)
T 2y5s_A 115 -AA--GADLINDIWGF--R-QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDA--GVA 186 (294)
T ss_dssp -HH--TCSEEEETTTT--C-STTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred -Hc--CCCEEEECCCC--C-chHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHc--CCC
Confidence 11 11233333321 1 3344433211 111 45677788888888 885
Q ss_pred ---EEEEEEEcCCCCCH-HHHHHHHHHHHHcC
Q 006956 348 ---IATDIICGFPGETD-EDFNQTVNLIKEYK 375 (624)
Q Consensus 348 ---i~td~IvGfPGETe-edf~eTl~fl~el~ 375 (624)
+..|--+|| +.|. ++-.++++-+.+++
T Consensus 187 ~~~IilDPG~Gf-~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 187 AERICVDPGFGF-GKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp GGGEEEECCTTS-SSCTTHHHHHHHHTGGGGS
T ss_pred hhhEEEeCCCcc-cccchHHHHHHHHHHHHHH
Confidence 888988888 5565 55555666555554
No 54
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=42.75 E-value=1.4e+02 Score=24.62 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 56 ~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
+.+.+|.|+. -|....+.+...|+..||++... ...+|+|+++.-. -.. ...++++++++
T Consensus 5 ~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~---~g~~~~~~l~~ 76 (136)
T 3hdv_A 5 AARPLVLVVD----DNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRM-QPE---SGLDLIRTIRA 76 (136)
T ss_dssp --CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSS---CHHHHHHHHHT
T ss_pred CCCCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCC---CHHHHHHHHHh
Confidence 3456676654 35667788899999999987532 2238999996432 221 23455666665
Q ss_pred C---CCCEE-EEccccCcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 006956 124 A---KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 124 ~---~~~VV-VgGc~aq~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 169 (624)
. +.+|| +++....... ......++ ++.-+-....+...|+....|.
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 4 23455 4443211111 12233444 5667777788888888877664
No 55
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=42.11 E-value=1.5e+02 Score=24.70 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=58.7
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-- 124 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~-- 124 (624)
+++|.|+. -|....+.+...|+..||++... ...+|+|+++. .-. ....++++.+++.
T Consensus 4 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~---~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 4 TPTVMVVD----ESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--FEG---EESLNLIRRIREEFP 74 (142)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--TTT---HHHHHHHHHHHHHCT
T ss_pred CCeEEEEe----CCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--CCC---CcHHHHHHHHHHHCC
Confidence 44555553 34566778888898889986532 34689999976 222 1234555655543
Q ss_pred CCCEE-EEccccCcChh--hhcCCc-cEEEcCCchhHHHHHHHHHhcCC
Q 006956 125 KKPLV-VAGCVPQGSRD--LKELEG-VSIVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 125 ~~~VV-VgGc~aq~~~e--~~~~~~-d~VvG~~~~~~l~ell~~~~~g~ 169 (624)
+.+|| +++- ...... .....+ +++.-.-....+.+.+.....+.
T Consensus 75 ~~pii~ls~~-~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 75 DTKVAVLSAY-VDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp TCEEEEEESC-CCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCEEEEECC-CCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 34555 4443 221111 123334 45666667778888887776553
No 56
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=42.10 E-value=17 Score=36.18 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=43.0
Q ss_pred CCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcChhh-hcCCccEEEcC--CchhHHHHHHH
Q 006956 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL-KELEGVSIVGV--QQIDRVVEVVE 163 (624)
Q Consensus 95 ~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~~e~-~~~~~d~VvG~--~~~~~l~ell~ 163 (624)
+||+++|+..|+.+.+- ..+++..+ ....+|+.|+.++..|++ .....+.+-|. .+.+.+.+.|.
T Consensus 164 ~~D~v~iTGsTlvN~Ti---~~lL~~~~-~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~ 231 (249)
T 3npg_A 164 EVDGIIASASCIVNGTL---DMILDRAK-KAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLK 231 (249)
T ss_dssp GCSEEEEETTHHHHTCH---HHHHHHCS-SCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEEeeeeccCCH---HHHHHhCc-ccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHH
Confidence 69999998888877653 44455443 344689999999999985 45666654443 33344555553
No 57
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=41.50 E-value=48 Score=34.13 Aligned_cols=140 Identities=11% Similarity=0.145 Sum_probs=71.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--cC---CHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--~~---~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 293 (624)
+..+.+.+++.++++++.|..-|.+.|+.+- -|... .+ ++..+++.+.+..+ ...+.+.+.+|..+..-+
T Consensus 60 ~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTr-PG~~v~~~eEl~Rv~pvI~~l~~~~~---~vpISIDT~~~~VaeaAl- 134 (318)
T 2vp8_A 60 ATFSDAAARDAVHRAVADGADVIDVGGVKAG-PGERVDVDTEITRLVPFIEWLRGAYP---DQLISVDTWRAQVAKAAC- 134 (318)
T ss_dssp ----CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHST---TCEEEEECSCHHHHHHHH-
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCHHHHHHHHHHHHHHHHhhCC---CCeEEEeCCCHHHHHHHH-
Confidence 3457899999999999999998888765332 23111 11 34445666665432 356777766654322211
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHh--------------------hcCC--CC----------HHHHHHHHHHHHH
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSA--------------------MNRE--YT----------LSDFRTVVDTLIE 341 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~--------------------M~R~--~t----------~e~~~e~I~~lr~ 341 (624)
+. -..+.+-++-+ + +++++.. |.+. |. .+.+.+.++.+.+
T Consensus 135 ---~a--Ga~iINDVsg~-~--d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~ 206 (318)
T 2vp8_A 135 ---AA--GADLINDTWGG-V--DPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVA 206 (318)
T ss_dssp ---HH--TCCEEEETTSS-S--STTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---Hh--CCCEEEECCCC-C--chHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 11 11233333322 1 3333322 1111 10 1455667788888
Q ss_pred hCCCCE---EEEEEEEcCCCCCHHHHHHHHHHHHHc
Q 006956 342 LVPGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (624)
Q Consensus 342 ~~pgi~---i~td~IvGfPGETeedf~eTl~fl~el 374 (624)
+ |+. +..|=-+|| +.|.++-.++++.+.++
T Consensus 207 a--GI~~~~IilDPG~GF-~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 207 A--GVAREKVLIDPAHDF-GKNTFHGLLLLRHVADL 239 (318)
T ss_dssp T--TCCGGGEEEETTTTC-CTTSHHHHHHHHTHHHH
T ss_pred c--CCChhhEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 8 874 888888888 55555555555555544
No 58
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=41.34 E-value=2.3e+02 Score=28.97 Aligned_cols=138 Identities=14% Similarity=0.200 Sum_probs=79.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC----c---c---CCHHHHHHHHHHhCCCCCCceEEEeecCCcch
Q 006956 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----I---G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d----~---~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i 288 (624)
+..+++.+++.++.+++.|+.-|.+.++.+.. |.+ . . .++..+++.+.+.. ...+.+.+.+|..+
T Consensus 44 ~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrP-ga~~~~~~V~~~eE~~Rv~pvI~~l~~~~----~vpISIDT~~~~Va 118 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVDEGADILDIGGEATNP-FVDIKTDSPSTQIELDRLLPVIDAIKKRF----PQLISVDTSRPRVM 118 (314)
T ss_dssp BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCT-TC-----CHHHHHHHHHHHHHHHHHHHHC----CSEEEEECSCHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CcccccCCCCHHHHHHHHHHHHHHHHhhC----CCeEEEeCCCHHHH
Confidence 66789999999999999999988887653322 222 1 0 12455666665542 35788886666433
Q ss_pred hHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhh----------c-CC--CC-------------HHHHHHHHHHHHHh
Q 006956 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM----------N-RE--YT-------------LSDFRTVVDTLIEL 342 (624)
Q Consensus 289 ~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M----------~-R~--~t-------------~e~~~e~I~~lr~~ 342 (624)
..-+ + .-..+.+-++-+ + .++++... . ++ .+ .+.+.+.++.+.++
T Consensus 119 ~aAl----~--aGa~iINDVsg~-~--~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~ 189 (314)
T 3tr9_A 119 REAV----N--TGADMINDQRAL-Q--LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKA 189 (314)
T ss_dssp HHHH----H--HTCCEEEETTTT-C--STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH----H--cCCCEEEECCCC-C--chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHc
Confidence 2211 1 122344554422 2 33444332 1 11 11 35567788888888
Q ss_pred CCCCE---EEEEEEEc---CCCCCHHHHHHHHHHHHH
Q 006956 343 VPGMQ---IATDIICG---FPGETDEDFNQTVNLIKE 373 (624)
Q Consensus 343 ~pgi~---i~td~IvG---fPGETeedf~eTl~fl~e 373 (624)
|+. +..|=-+| | +.|.++-.++++-+.+
T Consensus 190 --GI~~~~IilDPG~G~~~F-~Kt~~~n~~lL~~l~~ 223 (314)
T 3tr9_A 190 --GISEDRIIIDPGFGQGNY-GKNVSENFYLLNKLPE 223 (314)
T ss_dssp --TCCGGGEEEECCCCSGGG-CCCHHHHHHHHHTTHH
T ss_pred --CCCHhHEEEeCCCCchhh-cCCHHHHHHHHHHHHH
Confidence 874 77777678 7 6676654444444433
No 59
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=37.94 E-value=1.4e+02 Score=24.61 Aligned_cols=95 Identities=7% Similarity=0.053 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHhcCceee---CCC---------CCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEE-EEcccc
Q 006956 71 NQSDSEYMAGQLSAFGYALT---DNS---------EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLV-VAGCVP 135 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~---~~~---------~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~--~~VV-VgGc~a 135 (624)
|....+.+...|+..||.++ .+. ..+|+|+++.-. ... ...++++++++.+ .+|| +++...
T Consensus 10 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~---~g~~~~~~l~~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 10 HPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI-PGV---NGIQVLETLRKRQYSGIIIIVSAKND 85 (134)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSS---CHHHHHHHHHHTTCCSEEEEEECC--
T ss_pred CHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCC---ChHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 45667788899999998875 222 347999996532 221 2344556665543 3444 555432
Q ss_pred CcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 006956 136 QGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 136 q~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 169 (624)
.... ......++ ++.-+-....+.+.+.....+.
T Consensus 86 ~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 86 HFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp -CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 2222 22244444 4666666678888888877665
No 60
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=37.37 E-value=1.1e+02 Score=25.03 Aligned_cols=103 Identities=10% Similarity=0.057 Sum_probs=58.4
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~-- 125 (624)
++|.|+. -|....+.+...|++.||.+... ...+|+|+++...-. . ...++++++++..
T Consensus 7 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~---~g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 7 KRILVVD----DDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPK-L---DGLDVIRSLRQNKVA 78 (132)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTT-B---CHHHHHHHHHTTTCS
T ss_pred ccEEEEE----CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCC-C---CHHHHHHHHHhcCcc
Confidence 4555543 35666778888899899876532 245799999653322 1 2345566665533
Q ss_pred --CCEEEEccccCcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 006956 126 --KPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 126 --~~VVVgGc~aq~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 169 (624)
++|++..-...... ......++ ++.-+-....+.+.|.....+.
T Consensus 79 ~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 79 NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp SCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 45666543332211 12233444 4566667777888887766553
No 61
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=34.48 E-value=1.5e+02 Score=31.03 Aligned_cols=140 Identities=18% Similarity=0.195 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCC----------CC----CCccCCHHHHHHHHHHhCCCCCCceEEEeecCC
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA----------YG----RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~----------yg----~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p 285 (624)
..+.+..++++++|.+.|..-|.++-.+... +. .|...+...++..+.. +...+|+ ||
T Consensus 42 T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~-----G~dklRI---NP 113 (366)
T 3noy_A 42 THDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEK-----GVHGIRI---NP 113 (366)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHT-----TCSEEEE---CH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHh-----CCCeEEE---CC
Confidence 4789999999999999999887776432100 00 0111222333333321 3344664 55
Q ss_pred cch--hHHHHHHHHHHhCCCcceeccccCCCC--CHHHHHhhcCCC---CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 006956 286 PFI--LEHLKEIAEVLRHPCVYSFLHVPVQSG--SDAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (624)
Q Consensus 286 ~~i--~~~l~el~~l~~~~~v~~~l~IGlQSg--sd~vLk~M~R~~---t~e~~~e~I~~lr~~~pgi~i~td~IvGfPG 358 (624)
..+ .+.++++.+.++..+. -+-||+-+| ++++|.+++... -.+..++.++.+.+. |+ .+|++-+..
T Consensus 114 GNig~~~~~~~vv~~ak~~~~--piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~--gf---~~iviS~K~ 186 (366)
T 3noy_A 114 GNIGKEEIVREIVEEAKRRGV--AVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKW--GF---TNYKVSIKG 186 (366)
T ss_dssp HHHSCHHHHHHHHHHHHHHTC--EEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TC---CCEEEEEEC
T ss_pred cccCchhHHHHHHHHHHHcCC--CEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhC--CC---CeEEEeeec
Confidence 555 2344455555555443 455676666 578888776442 235556667777777 66 477777777
Q ss_pred CCHHHHHHHHHHHHHc
Q 006956 359 ETDEDFNQTVNLIKEY 374 (624)
Q Consensus 359 ETeedf~eTl~fl~el 374 (624)
-+..+..+..+.+.+.
T Consensus 187 S~v~~~i~ayr~la~~ 202 (366)
T 3noy_A 187 SDVLQNVRANLIFAER 202 (366)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc
Confidence 6666666666655443
No 62
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=34.07 E-value=1.5e+02 Score=24.28 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=55.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~-- 125 (624)
++|.|+. -|....+.+...|+..||.+... ...+|+|+++...- .....++++++++.+
T Consensus 8 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~----~~~g~~~~~~l~~~~~~ 79 (130)
T 3eod_A 8 KQILIVE----DEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP----RMNGLKLLEHIRNRGDQ 79 (130)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC---------CHHHHHHHHHTTCC
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC----CCCHHHHHHHHHhcCCC
Confidence 4565553 34667788889999999886532 34589999964321 122345556665543
Q ss_pred CCEE-EEccccCcCh-hhhcCCcc-EEEcCC-chhHHHHHHHHHhcCC
Q 006956 126 KPLV-VAGCVPQGSR-DLKELEGV-SIVGVQ-QIDRVVEVVEETLKGH 169 (624)
Q Consensus 126 ~~VV-VgGc~aq~~~-e~~~~~~d-~VvG~~-~~~~l~ell~~~~~g~ 169 (624)
.+|| +++....... +.....++ ++.-+- ..+.+.+.+.....+.
T Consensus 80 ~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 80 TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 4554 5554321111 12233444 455554 5667888887766553
No 63
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.25 E-value=2e+02 Score=23.44 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHhcCceeeCC-----------CC-CCcEEEEeeccccc-chHHHHHHHHHHHhhC--CCCEE-EEccc
Q 006956 71 NQSDSEYMAGQLSAFGYALTDN-----------SE-EADIWLINTCTVKS-PSQSAMDTLIAKCKSA--KKPLV-VAGCV 134 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~~~-----------~~-~ADlviINTCtv~~-~ae~~~~~~ir~~k~~--~~~VV-VgGc~ 134 (624)
|....+.+...|...||.+... .. .+|+++++.- ... .. ..++++++++. +.+|| +++..
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~-l~~~~~---g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 14 EAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIR-FCQPPD---GWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESC-CSSSSC---HHHHHHHHHHHCTTCCEEEEESSC
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeee-CCCCCC---HHHHHHHHHhcCCCCCEEEEeCCc
Confidence 4556778888898889876532 23 6899999653 222 11 23344544433 44555 44432
Q ss_pred cCcChhhhcCC-ccEEEcCCchhHHHHHHHHHhcCC
Q 006956 135 PQGSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 135 aq~~~e~~~~~-~d~VvG~~~~~~l~ell~~~~~g~ 169 (624)
........+. ++++.-+-....+...|.....+.
T Consensus 90 -~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 90 -ALEWASNGVPDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp -CTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred -cHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcC
Confidence 2222122222 346666767778888888776654
No 64
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=33.23 E-value=2.3e+02 Score=26.82 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=44.5
Q ss_pred ceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Q 006956 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (624)
Q Consensus 305 ~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~~~v~i~ 382 (624)
+..+.+.... +.-..+.++..+..+.++++ |+.+.+--.. + .++.+.+++.++++.+++...+.+.
T Consensus 44 ~~~vEl~~~~--------~~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~-~-~~~~~~~~~~i~~A~~lGa~~v~~~ 109 (257)
T 3lmz_A 44 IHYLCIKDFH--------LPLNSTDEQIRAFHDKCAAH--KVTGYAVGPI-Y-MKSEEEIDRAFDYAKRVGVKLIVGV 109 (257)
T ss_dssp CCEEEECTTT--------SCTTCCHHHHHHHHHHHHHT--TCEEEEEEEE-E-ECSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCEEEEeccc--------CCCCCCHHHHHHHHHHHHHc--CCeEEEEecc-c-cCCHHHHHHHHHHHHHhCCCEEEec
Confidence 5666666542 11234667777777888888 8876542222 1 2788889999999999998888764
No 65
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=33.23 E-value=1.5e+02 Score=24.77 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=59.5
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC-
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK- 125 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~- 125 (624)
+.+|.|+. -+....+.+...|+..||++... ...+|+|+++.- .-.. .....++++++++.+
T Consensus 6 ~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~-l~~~-~~~g~~~~~~l~~~~~ 79 (136)
T 3kto_A 6 HPIIYLVD----HQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAH-LEDK-KDSGIELLETLVKRGF 79 (136)
T ss_dssp -CEEEEEC----SCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETT-GGGB-TTHHHHHHHHHHHTTC
T ss_pred CCeEEEEc----CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCc-CCCC-CccHHHHHHHHHhCCC
Confidence 34566653 24566778888898889987532 345899999642 2220 023455666666553
Q ss_pred -CCEE-EEccccCcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 006956 126 -KPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (624)
Q Consensus 126 -~~VV-VgGc~aq~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g 168 (624)
.+|| +++....... ......++ ++.-+-....+.+.|.....+
T Consensus 80 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 80 HLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 4544 5554322111 12233444 566666777788887776554
No 66
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=32.89 E-value=1.2e+02 Score=26.53 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=39.5
Q ss_pred EcCCCCCHHHHHHHHHHH-HHc-CCCeEEEEEeeeCCCCcccc-CCCCCHHHHHHHHHHHHHHHHHhCc
Q 006956 354 CGFPGETDEDFNQTVNLI-KEY-KFPQVHISQFYPRPGTPAAR-MKKVPSAVVKKRSRELTSVFEAFTP 419 (624)
Q Consensus 354 vGfPGETeedf~eTl~fl-~el-~~~~v~i~~ysP~PGTpa~~-~~~vp~~~~~~R~~~L~~l~~~~~~ 419 (624)
+-|.|++.+.|+..+.-+ ++. +|.-.- .|+ ..|..+.- ...+|+++.++-.++...+...+..
T Consensus 87 i~f~gddlea~ekalkemirqarkfagtv--tyt-l~gn~l~i~itgvpeqvrkelakeaerl~~efni 152 (170)
T 4hhu_A 87 IVFEGDDLEALEKALKEMIRQARKFAGTV--TYT-LSGNRLVIVITGVPEQVRKELAKEAERLKAEFNI 152 (170)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHTTCEE--EEE-ECSSEEEEEEESCCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhcceE--EEE-EeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcce
Confidence 346789999998877644 332 333221 222 34544432 2379999999988888888876643
No 67
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=32.15 E-value=27 Score=26.67 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.6
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHh
Q 006956 588 MGEWGVVDRALLGGMLVSFLIILALLIHVG 617 (624)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (624)
-+-|-.||--.+-=++..|++++|++||+.
T Consensus 7 ~KIWlvvdP~~~L~~l~~~v~vlAllIH~~ 36 (56)
T 1lgh_A 7 YKIWLVINPSTWLPVIWIVATVVAIAVHAA 36 (56)
T ss_dssp GGHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCceeHHHHHHHHHHHHHHHHHH
Confidence 367888887666666777888999999975
No 68
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=32.06 E-value=62 Score=32.19 Aligned_cols=76 Identities=9% Similarity=0.176 Sum_probs=42.5
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC-
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK- 125 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~- 125 (624)
|+++-|+- | ..=......+...|++.||+++-. ..+.|+||+....-..-.+.. .+.++.+-+.|
T Consensus 4 m~~vLiV~-g-~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~-~~~L~~yV~~GG 80 (259)
T 3rht_A 4 MTRVLYCG-D-TSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTAQA-IDQLVTMVKAGC 80 (259)
T ss_dssp --CEEEEE-S-SCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCHHH-HHHHHHHHHTTC
T ss_pred CceEEEEC-C-CCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCHHH-HHHHHHHHHhCC
Confidence 67777772 1 111346788999999999987531 136799998532211112333 33344443455
Q ss_pred CCEEEEccccC
Q 006956 126 KPLVVAGCVPQ 136 (624)
Q Consensus 126 ~~VVVgGc~aq 136 (624)
.-|++||...-
T Consensus 81 gLi~~gG~~s~ 91 (259)
T 3rht_A 81 GLVMLGGWESY 91 (259)
T ss_dssp EEEEECSTTSS
T ss_pred eEEEecCcccc
Confidence 46778887643
No 69
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=31.79 E-value=1.8e+02 Score=29.85 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.+++++.++++.+++.|++.+.+=- |.+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.+.
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~------g~~~-~~d~~~v~avR~a~g--~~~~l~vD-an~~~~~~~a~~~~~~L~ 207 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKV------GTGI-EADIARVKAIREAVG--FDIKLRLD-ANQAWTPKDAVKAIQALA 207 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC------CSCH-HHHHHHHHHHHHHHC--TTSEEEEE-CTTCSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEe------CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999988631 1111 122567788877764 45677776 333322233333444444
Q ss_pred CCCcceeccccCCCCCHHHHH
Q 006956 301 HPCVYSFLHVPVQSGSDAVLS 321 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk 321 (624)
..+ ..+|.=|+...+-..++
T Consensus 208 ~~~-i~~iEqP~~~~d~~~~~ 227 (354)
T 3jva_A 208 DYQ-IELVEQPVKRRDLEGLK 227 (354)
T ss_dssp TSC-EEEEECCSCTTCHHHHH
T ss_pred hcC-CCEEECCCChhhHHHHH
Confidence 433 45666555444433333
No 70
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=31.19 E-value=1.9e+02 Score=28.46 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=77.8
Q ss_pred ceEEEeecCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc-----CCCCHHHHHHHHHHHHHhCCCCEEEE
Q 006956 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-----REYTLSDFRTVVDTLIELVPGMQIAT 350 (624)
Q Consensus 276 ~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~-----R~~t~e~~~e~I~~lr~~~pgi~i~t 350 (624)
..+.+.. -|. .....++.+.++..+.-..||+|+|..+..- ..++ -+.+.+++.+.+++..+.+|+..-..
T Consensus 28 ~pvT~Ai-~P~--~p~~~~~a~~A~~~G~EvllHlPMep~~~~~-~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~Gvn 103 (245)
T 2nly_A 28 IPVTVAV-MPF--LEHSTKQAEIAQAAGLEVIVHMPLEPKKGKI-SWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLN 103 (245)
T ss_dssp SCEEEEE-CSS--STTHHHHHHHHHHTTCEEEEEEEECCC---------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEE
T ss_pred CCeEEEE-CCC--CCCHHHHHHHHHHCCCEEEEEcCCCCCCCCC-CCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEEe
Confidence 4566663 332 1222334555555554568999999987332 1133 35688999999999999999965434
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEEe-e---------eCCCCccccCC------CCCHHHHHHHHHHHHHHH
Q 006956 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF-Y---------PRPGTPAARMK------KVPSAVVKKRSRELTSVF 414 (624)
Q Consensus 351 d~IvGfPGETeedf~eTl~fl~el~~~~v~i~~y-s---------P~PGTpa~~~~------~vp~~~~~~R~~~L~~l~ 414 (624)
+-|=+-=.++++-.+..++.+++.++- ++-.- + ..-|-|...-. ..+.+.+.+.++++..++
T Consensus 104 NHmGS~~T~~~~~m~~vm~~l~~~gL~--fvDS~Ts~~S~a~~~A~~~gvp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A 181 (245)
T 2nly_A 104 NHMGSKIVENEKIMRAILEVVKEKNAF--IIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKA 181 (245)
T ss_dssp EEECTTGGGCHHHHHHHHHHHHHTTCE--EEECCCCSSCSHHHHHHHTTCCEEECCEESCCTTCCHHHHHHHHHHHHHHH
T ss_pred cccccchhcCHHHHHHHHHHHHHCCCE--EEcCCCCcccHHHHHHHHcCCCeEEeeEECCCCCCCHHHHHHHHHHHHHHH
Confidence 444333367788899999999998752 22111 1 12344443311 233466667767666666
Q ss_pred H
Q 006956 415 E 415 (624)
Q Consensus 415 ~ 415 (624)
+
T Consensus 182 ~ 182 (245)
T 2nly_A 182 K 182 (245)
T ss_dssp H
T ss_pred h
Confidence 5
No 71
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=29.96 E-value=2.4e+02 Score=23.37 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=61.1
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHh-cCceeeCC-----------C-CCCcEEEEeecccccchHHHHHHHHHHHhh-
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDN-----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS- 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~-~G~~~~~~-----------~-~~ADlviINTCtv~~~ae~~~~~~ir~~k~- 123 (624)
+.+|.|+. -|....+.+...|+. .||+++.. . ..+|+|+++.-. +......++++++++
T Consensus 4 ~~~ilivd----d~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l---~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLID----YFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAF---PVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCS---SSHHHHHHHHHHHHHS
T ss_pred CCeEEEEe----CCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCC---CCCCcHHHHHHHHHhC
Confidence 45565553 345667788889998 89987532 3 678999996421 102234556666665
Q ss_pred ---CCCCEE-EEccccCcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 006956 124 ---AKKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 124 ---~~~~VV-VgGc~aq~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 169 (624)
.+.+|| +++....... ......++ ++.-+-....+.+.|.....+.
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 244555 5553221111 12234444 4666666678888888877664
No 72
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=29.95 E-value=1.2e+02 Score=25.16 Aligned_cols=103 Identities=11% Similarity=0.095 Sum_probs=58.3
Q ss_pred CCceEEEEecCCccChhHHHHHHHHHHhcC-ceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 006956 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (624)
Q Consensus 57 ~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G-~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (624)
.+++|.|+. -+....+.+...|+..| |++... ...+|+|+++.-.-.. ...++++++++.
T Consensus 13 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~----~g~~~~~~l~~~ 84 (135)
T 3snk_A 13 KRKQVALFS----SDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDL----LGKPGIVEARAL 84 (135)
T ss_dssp CCEEEEEEC----SCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGG----GGSTTHHHHHGG
T ss_pred CCcEEEEEc----CCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCc----hHHHHHHHHHhh
Confidence 356777764 35667788999999999 987532 3458999996532111 123444555543
Q ss_pred --CCCEE-EEccccCcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhc
Q 006956 125 --KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 125 --~~~VV-VgGc~aq~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~ 167 (624)
+.+|| +++....... ......++ ++.-+-....+...+.....
T Consensus 85 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 85 WATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp GTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 34554 5553321111 12233444 56666676777777765544
No 73
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=29.86 E-value=2.5e+02 Score=23.71 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=59.8
Q ss_pred CCCCCCceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHH
Q 006956 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKC 121 (624)
Q Consensus 53 ~~~~~~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~ 121 (624)
+.++.+.+|.|+. -|....+.+...|...||.+... ...+|+|+++...-... ..++++++
T Consensus 9 ~~~~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~----g~~~~~~l 80 (153)
T 3hv2_A 9 ATVTRRPEILLVD----SQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMD----GPTLLARI 80 (153)
T ss_dssp CCCCSCCEEEEEC----SCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSC----HHHHHHHH
T ss_pred hhccCCceEEEEC----CCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCc----HHHHHHHH
Confidence 3445567787764 34566778888899889987532 24589999965432222 23444545
Q ss_pred hhC--CCCEE-EEccccCcCh--hhhcCC-cc-EEEcCCchhHHHHHHHHHhc
Q 006956 122 KSA--KKPLV-VAGCVPQGSR--DLKELE-GV-SIVGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 122 k~~--~~~VV-VgGc~aq~~~--e~~~~~-~d-~VvG~~~~~~l~ell~~~~~ 167 (624)
++. +.+|| +++. ..... +..... ++ ++.-+-....+...|.....
T Consensus 81 ~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 81 HQQYPSTTRILLTGD-PDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp HHHCTTSEEEEECCC-CCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred HhHCCCCeEEEEECC-CCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 443 34555 4442 22211 122334 44 45566666777777766543
No 74
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=29.86 E-value=2.2e+02 Score=23.00 Aligned_cols=92 Identities=10% Similarity=0.110 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC-CCCE-EEEccccCc
Q 006956 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKPL-VVAGCVPQG 137 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~-~~~V-VVgGc~aq~ 137 (624)
+....+.+...|+..||++... ...+|++++..-. -. ..-.++++++++. +.+| +++|.....
T Consensus 11 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~-p~---~~g~~~~~~lr~~~~~~ii~~t~~~~~~ 86 (120)
T 3f6p_A 11 EKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIML-PN---KDGVEVCREVRKKYDMPIIMLTAKDSEI 86 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTS-TT---THHHHHHHHHHTTCCSCEEEEEESSCHH
T ss_pred CHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCC-CC---CCHHHHHHHHHhcCCCCEEEEECCCChH
Confidence 3455677788888888876432 3468999996422 11 1234556666543 3454 455533221
Q ss_pred Chh-hhcCCcc-EEEcCCchhHHHHHHHHHh
Q 006956 138 SRD-LKELEGV-SIVGVQQIDRVVEVVEETL 166 (624)
Q Consensus 138 ~~e-~~~~~~d-~VvG~~~~~~l~ell~~~~ 166 (624)
... .....++ ++.-+-....+...+....
T Consensus 87 ~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 87 DKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp HHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 111 1233444 5666666677777666544
No 75
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=29.77 E-value=4e+02 Score=25.98 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=76.8
Q ss_pred cccCCHHHHHHHHHHHHHCCCc--EEEEeecCC---CCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHH
Q 006956 218 LGSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~Gvk--eI~l~g~d~---~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 292 (624)
.-+.+...+.++++.+.+.|++ ++.+.+..| .++| ..++++|++..+. -..-+.+...+|.. ..
T Consensus 34 ilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G-------~~~v~~lr~~~p~-~~ldvHLmv~~p~~---~i 102 (246)
T 3inp_A 34 ILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG-------PMVLKALRDYGIT-AGMDVHLMVKPVDA---LI 102 (246)
T ss_dssp GGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-------HHHHHHHHHHTCC-SCEEEEEECSSCHH---HH
T ss_pred hhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC-------HHHHHHHHHhCCC-CeEEEEEeeCCHHH---HH
Confidence 4456677888999999888887 555666544 2333 5778888776421 12345555456643 22
Q ss_pred HHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 006956 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (624)
Q Consensus 293 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 372 (624)
+.+.+ .+ ...+++..|+.. +..+.++.+|++ |+.+...+--+.|- +.++..++
T Consensus 103 ~~~~~----aG-Ad~itvH~Ea~~--------------~~~~~i~~ir~~--G~k~Gvalnp~Tp~---e~l~~~l~--- 155 (246)
T 3inp_A 103 ESFAK----AG-ATSIVFHPEASE--------------HIDRSLQLIKSF--GIQAGLALNPATGI---DCLKYVES--- 155 (246)
T ss_dssp HHHHH----HT-CSEEEECGGGCS--------------CHHHHHHHHHTT--TSEEEEEECTTCCS---GGGTTTGG---
T ss_pred HHHHH----cC-CCEEEEccccch--------------hHHHHHHHHHHc--CCeEEEEecCCCCH---HHHHHHHh---
Confidence 22222 12 567888877763 245677888888 98877665444443 33322222
Q ss_pred HcCCCeEEEEEeeeCCCCcc
Q 006956 373 EYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 373 el~~~~v~i~~ysP~PGTpa 392 (624)
.+|.+- .++..||..-
T Consensus 156 --~vD~Vl--vMsV~PGfgG 171 (246)
T 3inp_A 156 --NIDRVL--IMSVNPGFGG 171 (246)
T ss_dssp --GCSEEE--EECSCTTC--
T ss_pred --cCCEEE--EeeecCCCCC
Confidence 256543 4567788744
No 76
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=29.67 E-value=2.7e+02 Score=28.98 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEe-ecCCCC-----------CCC--Cc---cCCHHHHHHHHHHhCCCCCCceEEEeec
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLS-SEDTGA-----------YGR--DI---GVNLPILLNAIVAELPPDGSTMLRIGMT 283 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~-g~d~~~-----------yg~--d~---~~~l~eLL~~l~~~l~~~~~~~iri~~~ 283 (624)
.+++++.++++.+++.|++.+.+= |.+... -|. +. .....+.++++.+.++ ....+++. .
T Consensus 132 ~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G--~d~~l~vD-a 208 (401)
T 3sbf_A 132 DTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYG--NQFHILHD-V 208 (401)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHT--TSSEEEEE-C
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcC--CCCEEEEE-C
Confidence 468999999999999999988762 211000 000 00 0123566778877765 45677776 3
Q ss_pred CCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC
Q 006956 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 284 ~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R 325 (624)
|-..-.+...++.+.+...+ ..+|.=|+...+-..++.+++
T Consensus 209 n~~~~~~~A~~~~~~L~~~~-i~~iEqP~~~~~~~~~~~l~~ 249 (401)
T 3sbf_A 209 HERLFPNQAIQFAKEVEQYK-PYFIEDILPPNQTEWLDNIRS 249 (401)
T ss_dssp TTCSCHHHHHHHHHHHGGGC-CSCEECSSCTTCGGGHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcC-CCEEECCCChhHHHHHHHHHh
Confidence 43322233333444444333 456776665555555555544
No 77
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.59 E-value=2.1e+02 Score=23.23 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC----CCCE-EEEccc
Q 006956 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKPL-VVAGCV 134 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~----~~~V-VVgGc~ 134 (624)
|....+.+...|+..||.+... ...+|+|+++...-.. ...++++++++. +.+| ++++..
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~----~g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 12 YQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDT----SGLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSS----BHHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCC----CHHHHHHHHHhhhccCCCCEEEEECCc
Confidence 4566788888999999876432 2458999996533221 234555666554 2344 455544
Q ss_pred cCcChhhhcCCcc-EEEcCCchhHHHHHHHHHhc
Q 006956 135 PQGSRDLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 135 aq~~~e~~~~~~d-~VvG~~~~~~l~ell~~~~~ 167 (624)
...........++ ++.-+-....+.+.+.....
T Consensus 88 ~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 88 KNDLGKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred chhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 3333221222234 56667777777777765543
No 78
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=29.46 E-value=73 Score=32.46 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CC--Cc---cCCHHHHHHHHHHh
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GR--DI---GVNLPILLNAIVAE 269 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~y-g~--d~---~~~l~eLL~~l~~~ 269 (624)
.++.+++.+.+..+.+.|++.|..+..|.... |. +. -.+-.+|++.+.+.
T Consensus 82 ~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~ 137 (310)
T 3apt_A 82 GQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRER 137 (310)
T ss_dssp TSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 46888999999999999999988766665443 30 10 12567788877664
No 79
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=28.91 E-value=2.2e+02 Score=23.86 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=60.2
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcC-ceeeCC------------C-CCCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN------------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G-~~~~~~------------~-~~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
..+|.|+. -+....+.+...|+..| |.++.. . ..+|+|+++.- .-. ....++++++++
T Consensus 20 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~-l~~---~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVAS----EDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA-ALD---TAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEEC----SCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT-TCC---HHHHHHHHHHHH
T ss_pred CCeEEEEe----CCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC-CCC---ccHHHHHHHHHH
Confidence 45676664 34666788899999998 876432 2 67899999653 221 233455665654
Q ss_pred C--CCCEE-EEccccCcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 006956 124 A--KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 124 ~--~~~VV-VgGc~aq~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 169 (624)
. +.+|| +++....... +.....++ ++.-.-....|...|.....+.
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 4 34444 5553211111 11233444 5666667778888887766543
No 80
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=27.57 E-value=2.4e+02 Score=24.08 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=58.0
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC---
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--- 124 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--- 124 (624)
++|.|+. -|....+.+...|+..||.+... ...+|+|+++.-.- .. ...++++.+++.
T Consensus 8 ~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~-~~---~g~~~~~~lr~~~~~ 79 (154)
T 3gt7_A 8 GEILIVE----DSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMP-EM---DGYALCRWLKGQPDL 79 (154)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCS-SS---CHHHHHHHHHHSTTT
T ss_pred CcEEEEe----CCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCC-CC---CHHHHHHHHHhCCCc
Confidence 4555543 35667788889999999986432 35689999965322 21 124455555543
Q ss_pred -CCCEE-EEccccCcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 006956 125 -KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (624)
Q Consensus 125 -~~~VV-VgGc~aq~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g 168 (624)
+.+|| +++....... ......++ ++.-+-....+...+.....+
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 80 RTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 34555 5553221111 11233444 566666777788877776544
No 81
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=27.46 E-value=2.1e+02 Score=29.77 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=55.7
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHH
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~ 299 (624)
..+++++.++++.+.+.|++.|-+=- |.+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.+
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~iKiKv------G~~~-~~d~~~v~avR~a~g--~d~~l~vD-an~~~~~~~A~~~~~~l 218 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQGFTAAKLKV------GRAP-RKDAANLRAMRQRVG--ADVEILVD-ANQSLGRHDALAMLRIL 218 (389)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEEC------CSCH-HHHHHHHHHHHHHHC--TTSEEEEE-CTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEeecc------CCCH-HHHHHHHHHHHHHcC--CCceEEEE-CCCCcCHHHHHHHHHHH
Confidence 35789999999999999999988731 1111 123567788877764 45667776 33322223222344444
Q ss_pred hCCCcceeccccCCCCCHHHHHhhc
Q 006956 300 RHPCVYSFLHVPVQSGSDAVLSAMN 324 (624)
Q Consensus 300 ~~~~v~~~l~IGlQSgsd~vLk~M~ 324 (624)
...+ ..+|.=|+...+-..++.++
T Consensus 219 ~~~~-i~~iEqP~~~~d~~~~~~l~ 242 (389)
T 3ozy_A 219 DEAG-CYWFEEPLSIDDIEGHRILR 242 (389)
T ss_dssp HHTT-CSEEESCSCTTCHHHHHHHH
T ss_pred HhcC-CCEEECCCCcccHHHHHHHH
Confidence 3333 46777666555555555554
No 82
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=26.64 E-value=1.7e+02 Score=29.11 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=14.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHHh
Q 006956 321 SAMNREYTLSDFRTVVDTLIEL 342 (624)
Q Consensus 321 k~M~R~~t~e~~~e~I~~lr~~ 342 (624)
+.+..+.+.+++.+.++.+|+.
T Consensus 71 ~AL~~G~~~~~~~~~v~~ir~~ 92 (267)
T 3vnd_A 71 RSLAAGTTSSDCFDIITKVRAQ 92 (267)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhc
Confidence 3445667777777777777765
No 83
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=26.52 E-value=1.8e+02 Score=26.03 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=46.2
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-V 130 (624)
++|++ +||.....=...++..|...|+.+... ..+-|++++=|-+ ... ..+.+.++.+|+.|.+|| +
T Consensus 41 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 115 (180)
T 1jeo_A 41 KKIFI--FGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGS--GRT-ESVLTVAKKAKNINNNIIAI 115 (180)
T ss_dssp SSEEE--ECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESS--SCC-HHHHHHHHHHHTTCSCEEEE
T ss_pred CEEEE--EeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCcEEEE
Confidence 35555 577777777888888888888754321 2345777764433 323 346777888999998765 6
Q ss_pred Eccc
Q 006956 131 AGCV 134 (624)
Q Consensus 131 gGc~ 134 (624)
++-.
T Consensus 116 T~~~ 119 (180)
T 1jeo_A 116 VCEC 119 (180)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 6643
No 84
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=26.34 E-value=4.8e+02 Score=25.70 Aligned_cols=63 Identities=22% Similarity=0.317 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
..++|...-||++. -..+++.+++-++.+.+.|+..|.+.+ .. |.-.+....++++.+.+.++
T Consensus 136 V~~~l~~~~~~e~~-------------~~~~~~~~~~~~~~~~~~G~d~i~l~D-t~---G~~~P~~~~~lv~~l~~~~~ 198 (295)
T 1ydn_A 136 IRGYVSCVVECPYD-------------GPVTPQAVASVTEQLFSLGCHEVSLGD-TI---GRGTPDTVAAMLDAVLAIAP 198 (295)
T ss_dssp EEEEEECSSEETTT-------------EECCHHHHHHHHHHHHHHTCSEEEEEE-TT---SCCCHHHHHHHHHHHHTTSC
T ss_pred EEEEEEEEecCCcC-------------CCCCHHHHHHHHHHHHhcCCCEEEecC-CC---CCcCHHHHHHHHHHHHHhCC
Confidence 34566666777763 124789999999999999999999984 22 32223456788888887653
No 85
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=26.05 E-value=2.3e+02 Score=27.25 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=73.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCc--EEEEeecCC---CCCCCCccCCHHHHHHHHHHhC-CCCCCceEEEeecCCcchhHHH
Q 006956 219 GSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPFILEHL 292 (624)
Q Consensus 219 Rsr~~e~Iv~EI~~L~~~Gvk--eI~l~g~d~---~~yg~d~~~~l~eLL~~l~~~l-~~~~~~~iri~~~~p~~i~~~l 292 (624)
-+.+..++-++++.+.+.|++ ++.+.+..| .++| .+++++|++.. +. -...+.+...+|.. ..
T Consensus 12 l~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-------~~~v~~ir~~~~~~-~~~dvhLmv~~p~~---~i 80 (228)
T 3ovp_A 12 LNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFG-------HPVVESLRKQLGQD-PFFDMHMMVSKPEQ---WV 80 (228)
T ss_dssp TTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-------HHHHHHHHHHHCSS-SCEEEEEECSCGGG---GH
T ss_pred eeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccC-------HHHHHHHHHhhCCC-CcEEEEEEeCCHHH---HH
Confidence 345666778899999888887 455565544 2233 56778877653 20 12344554445543 22
Q ss_pred HHHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 006956 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (624)
Q Consensus 293 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 372 (624)
+.+.+. + ...+++..|+... ..+.++.++++ |+.+...+- |+...+.+++.+ .
T Consensus 81 ~~~~~a----G-ad~itvH~Ea~~~--------------~~~~i~~i~~~--G~k~gval~---p~t~~e~l~~~l---~ 133 (228)
T 3ovp_A 81 KPMAVA----G-ANQYTFHLEATEN--------------PGALIKDIREN--GMKVGLAIK---PGTSVEYLAPWA---N 133 (228)
T ss_dssp HHHHHH----T-CSEEEEEGGGCSC--------------HHHHHHHHHHT--TCEEEEEEC---TTSCGGGTGGGG---G
T ss_pred HHHHHc----C-CCEEEEccCCchh--------------HHHHHHHHHHc--CCCEEEEEc---CCCCHHHHHHHh---c
Confidence 223321 2 5677777776531 45678888888 887765543 433333332222 1
Q ss_pred HcCCCeEEEEEeeeCCCCcc
Q 006956 373 EYKFPQVHISQFYPRPGTPA 392 (624)
Q Consensus 373 el~~~~v~i~~ysP~PGTpa 392 (624)
.++.+. ..+-.||..-
T Consensus 134 --~~D~Vl--~msv~pGf~G 149 (228)
T 3ovp_A 134 --QIDMAL--VMTVEPGFGG 149 (228)
T ss_dssp --GCSEEE--EESSCTTTCS
T ss_pred --cCCeEE--EeeecCCCCC
Confidence 256543 4555777744
No 86
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.03 E-value=94 Score=24.56 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC----CCC-EEEEccc
Q 006956 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKP-LVVAGCV 134 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~----~~~-VVVgGc~ 134 (624)
|....+.+...|+..||.+... ...+|+++++...- ... ..++++.+++. +.+ |++++.
T Consensus 10 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~---~~~~~~~l~~~~~~~~~~ii~~~~~- 84 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQS---CLLLLQHLREHQADPHPPLVLFLGE- 84 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCT---HHHHHHHHHHTCCCSSCCCEEEESS-
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCC---HHHHHHHHHhccccCCCCEEEEeCC-
Confidence 4556677888888888876532 12479999965332 211 23445555443 344 445554
Q ss_pred cCcChhhhcCCccE-EEcCCchhHHHHHHHH
Q 006956 135 PQGSRDLKELEGVS-IVGVQQIDRVVEVVEE 164 (624)
Q Consensus 135 aq~~~e~~~~~~d~-VvG~~~~~~l~ell~~ 164 (624)
.... .......+. +.-+-....+...+..
T Consensus 85 ~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~ 114 (119)
T 2j48_A 85 PPVD-PLLTAQASAILSKPLDPQLLLTTLQG 114 (119)
T ss_dssp CCSS-HHHHHHCSEECSSCSTTHHHHHHHHT
T ss_pred CCch-hhhhcCHHHhccCCCCHHHHHHHHHH
Confidence 3322 322223343 3333344555555543
No 87
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=25.52 E-value=5.3e+02 Score=25.95 Aligned_cols=124 Identities=11% Similarity=0.131 Sum_probs=69.3
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCC----cc--hhHHHH
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP----PF--ILEHLK 293 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p----~~--i~~~l~ 293 (624)
.++.+++.+.+..+.+.|++.|..+..|....+......-.+|++.|.+. +...+.+. .+| .. ...++.
T Consensus 93 ~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~----~~f~IgvA-~yPE~Hp~a~~~~~d~~ 167 (304)
T 3fst_A 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV----ADFDISVA-AYPEVHPEAKSAQADLL 167 (304)
T ss_dssp TSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH----CCCEEEEE-ECTTCCTTCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEE-eCCCcCCCCCCHHHHHH
Confidence 46888999999999999999998876665543321124567888888764 23344443 333 21 111222
Q ss_pred HHHHHHhCCCcceeccccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHH
Q 006956 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQT 367 (624)
Q Consensus 294 el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R~~t~e~~~e~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eT 367 (624)
.|.+-.+.+ ..++ . -.=-|+.+.+.+.++.+++. |+.+ -+|.|+ |=-+...+...
T Consensus 168 ~Lk~KvdAG--Adf~-----------i--TQ~ffD~~~~~~f~~~~r~~--Gi~v--PIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 168 NLKRKVDAG--ANRA-----------I--TQFFFDVESYLRFRDRCVSA--GIDV--EIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp HHHHHHHHT--CCEE-----------E--ECCCSCHHHHHHHHHHHHHT--TCCS--CEECEECCCSCHHHHHHH
T ss_pred HHHHHHHcC--CCEE-----------E--eCccCCHHHHHHHHHHHHhc--CCCC--cEEEEecccCCHHHHHHH
Confidence 222211111 1111 1 12247889999999999998 7643 566675 44455544433
No 88
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.51 E-value=2.9e+02 Score=22.86 Aligned_cols=102 Identities=7% Similarity=0.018 Sum_probs=57.2
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~ 124 (624)
|.+|.|+. -|....+.+...|...||.+... ...+|+|+++...- ... ..++++++++.
T Consensus 3 ~~~ilivd----d~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~-~~~---g~~~~~~l~~~ 74 (143)
T 3jte_A 3 LAKILVID----DESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMP-KLS---GMDILREIKKI 74 (143)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCS-SSC---HHHHHHHHHHH
T ss_pred CCEEEEEc----CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCC-CCc---HHHHHHHHHHh
Confidence 34555543 35667788888899899876432 35789999975432 221 23444555443
Q ss_pred --CCCEE-EEccccCcCh--hhhcCCcc-EEEcCCchhHHHHHHHHHhcC
Q 006956 125 --KKPLV-VAGCVPQGSR--DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (624)
Q Consensus 125 --~~~VV-VgGc~aq~~~--e~~~~~~d-~VvG~~~~~~l~ell~~~~~g 168 (624)
+.+|| +++. ..... ......++ ++.-+-....+...|.....+
T Consensus 75 ~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 75 TPHMAVIILTGH-GDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp CTTCEEEEEECT-TCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECC-CCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 34555 4443 22211 12233444 566666777787777765543
No 89
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=25.41 E-value=2.9e+02 Score=28.83 Aligned_cols=46 Identities=7% Similarity=-0.159 Sum_probs=28.8
Q ss_pred hcC-CCCHHHHHHHHHHHHHhCCCCEEE-EEEEEcCCCCCHHHHHHHHH
Q 006956 323 MNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPGETDEDFNQTVN 369 (624)
Q Consensus 323 M~R-~~t~e~~~e~I~~lr~~~pgi~i~-td~IvGfPGETeedf~eTl~ 369 (624)
|+| |.+.+++.++++.+++. |++.+. ..+.+|--..+.+.+.+.++
T Consensus 174 ~sRfG~~~~e~~~l~~~~~~~-~~l~l~Gl~~H~gs~~~~~~~~~~~~~ 221 (425)
T 2qgh_A 174 ENKFGVGEKEALEMFLWAKKS-AFLEPVSVHFHIGSQLLDLEPIIEASQ 221 (425)
T ss_dssp TSSSSBCHHHHHHHHHHHHHC-SSEEEEEEECCCBSSBCCHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhC-CCccEEEEEEECCCCCCCHHHHHHHHH
Confidence 666 57889999999988874 777643 34445643334554444433
No 90
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=24.69 E-value=3.7e+02 Score=27.77 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.++++++++++.+++.|++.+-+=- |.+. ..-.+.++++.+.++ ....+++. .|-..-.+....+.+.+.
T Consensus 141 ~~~e~~~~~a~~~~~~Gf~~~KlK~------g~~~-~~d~~~v~avR~a~g--~~~~L~vD-aN~~w~~~~A~~~~~~l~ 210 (379)
T 3r0u_A 141 GNVAETIQNIQNGVEANFTAIKVKT------GADF-NRDIQLLKALDNEFS--KNIKFRFD-ANQGWNLAQTKQFIEEIN 210 (379)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEC------SSCH-HHHHHHHHHHHHHCC--TTSEEEEE-CTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeec------CCCH-HHHHHHHHHHHHhcC--CCCeEEEe-CCCCcCHHHHHHHHHHHh
Confidence 3689999999999999999988732 1111 122577888888775 45678877 443332333334444444
Q ss_pred C--CCcceeccccCCCCCHHHHHhhcC
Q 006956 301 H--PCVYSFLHVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 301 ~--~~v~~~l~IGlQSgsd~vLk~M~R 325 (624)
. .+ ..++.=|+-..+.+.++.+.+
T Consensus 211 ~~~~~-l~~iEeP~~~~d~~~~~~l~~ 236 (379)
T 3r0u_A 211 KYSLN-VEIIEQPVKYYDIKAMAEITK 236 (379)
T ss_dssp TSCCC-EEEEECCSCTTCHHHHHHHHH
T ss_pred hcCCC-cEEEECCCCcccHHHHHHHHh
Confidence 4 23 567777776666666655543
No 91
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=24.65 E-value=3.2e+02 Score=28.44 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=53.1
Q ss_pred CCHHHHHHHH-HHHHHCCCcEEEEe-ecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 221 YTVESLVGRV-RTVIADGVKEVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 221 r~~e~Iv~EI-~~L~~~GvkeI~l~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
.+++++.+++ +.+++.|++.|-+= |........+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~-~~d~~~v~avR~a~g--~~~~l~vD-aN~~~~~~~A~~~~~~ 213 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDI-PGDIAKARAVRELLG--PDAVIGFD-ANNGYSVGGAIRVGRA 213 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCCSCCH-HHHHHHHHHHHHHHC--TTCCEEEE-CTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcccccCH-HHHHHHHHHHHHHhC--CCCeEEEE-CCCCCCHHHHHHHHHH
Confidence 4689999999 99999999998873 21100000011 123567777777664 45567776 3432222322233333
Q ss_pred HhCCCcceeccccCCCCCHHHHHhh
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVLSAM 323 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vLk~M 323 (624)
+...+ ..+|.=|+...+-+.++.+
T Consensus 214 L~~~~-i~~iEqP~~~~d~~~~~~l 237 (393)
T 4dwd_A 214 LEDLG-YSWFEEPVQHYHVGAMGEV 237 (393)
T ss_dssp HHHTT-CSEEECCSCTTCHHHHHHH
T ss_pred HHhhC-CCEEECCCCcccHHHHHHH
Confidence 43333 4567666654444444433
No 92
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.46 E-value=2.8e+02 Score=22.30 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCE-EEEccccC
Q 006956 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~~~~V-VVgGc~aq 136 (624)
|....+.+...|+..||++... ...+|+++++...-... ..++++++++ ++.+| ++++....
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (124)
T 1srr_A 12 QSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD----GIEILKRMKVIDENIRVIIMTAYGEL 87 (124)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCC----HHHHHHHHHHHCTTCEEEEEESSCCH
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCC----HHHHHHHHHHhCCCCCEEEEEccCch
Confidence 4455677778888888876422 13479999965321111 2344454543 34454 45554321
Q ss_pred cCh-hhhcCCc-cEEEcCCchhHHHHHHHHHhcC
Q 006956 137 GSR-DLKELEG-VSIVGVQQIDRVVEVVEETLKG 168 (624)
Q Consensus 137 ~~~-e~~~~~~-d~VvG~~~~~~l~ell~~~~~g 168 (624)
... ......+ +++.-+-....+.+.+.....+
T Consensus 88 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 88 DMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp HHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 111 1112233 4566666777777777765543
No 93
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=24.44 E-value=1.6e+02 Score=28.41 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=54.1
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCcC
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VVVgGc~aq~~ 138 (624)
.+|++++|+=.. .+.+.+...| |+ |+... ++.+ ++.+...++++++.|..+||||-++...
T Consensus 107 ~kIavVg~~~~~--~~~~~i~~ll---~~---------~i~~~---~~~~--~ee~~~~i~~l~~~G~~vVVG~~~~~~~ 167 (225)
T 2pju_A 107 SSIGVVTYQETI--PALVAFQKTF---NL---------RLDQR---SYIT--EEDARGQINELKANGTEAVVGAGLITDL 167 (225)
T ss_dssp SCEEEEEESSCC--HHHHHHHHHH---TC---------CEEEE---EESS--HHHHHHHHHHHHHTTCCEEEESHHHHHH
T ss_pred CcEEEEeCchhh--hHHHHHHHHh---CC---------ceEEE---EeCC--HHHHHHHHHHHHHCCCCEEECCHHHHHH
Confidence 589999997433 3445666666 33 33333 3333 3467888999999999999999776443
Q ss_pred hhhhcCCccEEEcCCchhHHHHHHHHHh
Q 006956 139 RDLKELEGVSIVGVQQIDRVVEVVEETL 166 (624)
Q Consensus 139 ~e~~~~~~d~VvG~~~~~~l~ell~~~~ 166 (624)
.+ ++....++-.. .+.+.+.++++.
T Consensus 168 A~--~~Gl~~vlI~s-~eSI~~Ai~eA~ 192 (225)
T 2pju_A 168 AE--EAGMTGIFIYS-AATVRQAFSDAL 192 (225)
T ss_dssp HH--HTTSEEEESSC-HHHHHHHHHHHH
T ss_pred HH--HcCCcEEEECC-HHHHHHHHHHHH
Confidence 33 23233444443 477888777654
No 94
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=24.43 E-value=2.9e+02 Score=28.57 Aligned_cols=102 Identities=11% Similarity=-0.034 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---------Cc---cCCHHHHHHHHHHhCCCCCCceEEEeecCCcc
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---------DI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~---------d~---~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~ 287 (624)
..+++++.++++.+.+.|++.+-+-......+|. +. .....+.++++.+.+. ....+++. .|-..
T Consensus 144 ~~~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG--~d~~l~vD-an~~~ 220 (403)
T 2ox4_A 144 KGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVG--PDVDIIVE-NHGHT 220 (403)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHC--TTSEEEEE-CTTCS
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhC--CCCeEEEE-CCCCC
Confidence 4589999999999999999998864210011121 10 0123567777777664 45667776 33322
Q ss_pred hhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhcC
Q 006956 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 288 i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R 325 (624)
-.+...++.+.+...+ ..++.=|+...+-+.++.+++
T Consensus 221 ~~~~ai~~~~~l~~~~-i~~iE~P~~~~d~~~~~~l~~ 257 (403)
T 2ox4_A 221 DLVSAIQFAKAIEEFN-IFFYEEINTPLNPRLLKEAKK 257 (403)
T ss_dssp CHHHHHHHHHHHGGGC-EEEEECCSCTTSTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-CCEEeCCCChhhHHHHHHHHH
Confidence 2233333444444333 456666665544444544443
No 95
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=24.41 E-value=1.8e+02 Score=26.25 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=46.2
Q ss_pred ceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 006956 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (624)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~VV-V 130 (624)
++|++ +||.....=...++..|...|+.+... ..+-|++++=|-+ ... ..+.+.++.+|++|.+|| +
T Consensus 38 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 112 (186)
T 1m3s_A 38 HQIFT--AGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGS--GET-KSLIHTAAKAKSLHGIVAAL 112 (186)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSS--SCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEE--EecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCC--CCc-HHHHHHHHHHHHCCCEEEEE
Confidence 45554 677777777888888998888764321 2345777763433 333 356778899999998765 6
Q ss_pred Ecc
Q 006956 131 AGC 133 (624)
Q Consensus 131 gGc 133 (624)
++.
T Consensus 113 T~~ 115 (186)
T 1m3s_A 113 TIN 115 (186)
T ss_dssp ESC
T ss_pred ECC
Confidence 654
No 96
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.37 E-value=2.7e+02 Score=22.86 Aligned_cols=95 Identities=9% Similarity=-0.009 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccc----cchHHHHHHHHHHHhhC--CCCEE-EEc
Q 006956 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVK----SPSQSAMDTLIAKCKSA--KKPLV-VAG 132 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~----~~ae~~~~~~ir~~k~~--~~~VV-VgG 132 (624)
|....+.+...|+..||.+... ...+|+|+++.-.-. .. ...++++++++. +.+|| +++
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~---~g~~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 12 NKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGN---EGLFWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp CHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----C---CHHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCc---cHHHHHHHHHhhCcCCCEEEEEC
Confidence 4556677888888888876532 235799999653210 11 123444555443 44555 554
Q ss_pred cccCcCh--hhhcCCcc-EEEcCCchhHHHHHHHHHhcCC
Q 006956 133 CVPQGSR--DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (624)
Q Consensus 133 c~aq~~~--e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 169 (624)
. ..... ......++ ++.-.-....+.+.|.....+.
T Consensus 89 ~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 89 Y-ADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp G-GGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred C-CCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 3 22111 12233444 4666667778888888776654
No 97
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=23.94 E-value=2.1e+02 Score=30.64 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---cC---CHHHHHHHHHHhCCCC-CCceEEEeecCCc
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GV---NLPILLNAIVAELPPD-GSTMLRIGMTNPP 286 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~---~~---~l~eLL~~l~~~l~~~-~~~~iri~~~~p~ 286 (624)
.+.+.+++.++.+++.|+.-|.+.|+.+- -|.+. .+ ++..+++++.+..+.. ....+.+.+.+|.
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTr-PGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~ 280 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTK-PDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLE 280 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCC-C----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHH
Confidence 57889999999999999998887765332 22211 11 2334466665421100 1356778766664
No 98
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=23.70 E-value=4e+02 Score=25.80 Aligned_cols=45 Identities=7% Similarity=0.095 Sum_probs=34.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCC
Q 006956 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (624)
Q Consensus 218 ~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 271 (624)
.|..++++.++-++.+++.|++-|.++-.+ ..-.+.++++.+.++
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t---------~~a~e~I~~l~~~~~ 84 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS---------DAAVEAIRLLRQAQP 84 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCT
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------CCHHHHHHHHHHhCC
Confidence 456678889999999999999988886321 123688888888775
No 99
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.70 E-value=2.2e+02 Score=25.54 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=45.0
Q ss_pred EEEecCCccChhHHHHHHHHHHhcCceeeCC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCE
Q 006956 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPL 128 (624)
Q Consensus 62 ~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-------------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~V 128 (624)
.|.-+||.....-...++..|...|..+... ..+-|++++=| ..... ..+.+.++.+|++|.+|
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS--~sG~t-~~~~~~~~~ak~~g~~v 117 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVS--VWRYL-RDTVAALAGAAERGVPT 117 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEEC--CSSCC-HHHHHHHHHHHHTTCCE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEe--CCCCC-HHHHHHHHHHHHCCCCE
Confidence 3445666677788888899998888664321 23457776633 33333 34677788899999876
Q ss_pred E-EEcc
Q 006956 129 V-VAGC 133 (624)
Q Consensus 129 V-VgGc 133 (624)
| +++.
T Consensus 118 i~IT~~ 123 (187)
T 3sho_A 118 MALTDS 123 (187)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 6 5654
No 100
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=23.59 E-value=1.8e+02 Score=29.94 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.++++++++++.+++.|++.+-+=- |.+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.+.
T Consensus 139 ~~~e~~~~~a~~~~~~G~~~~K~Kv------G~~~-~~d~~~v~avR~~~g--~~~~l~vD-aN~~~~~~~A~~~~~~l~ 208 (368)
T 3q45_A 139 DEPHKMAADAVQIKKNGFEIIKVKV------GGSK-ELDVERIRMIREAAG--DSITLRID-ANQGWSVETAIETLTLLE 208 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC------CSCH-HHHHHHHHHHHHHHC--SSSEEEEE-CTTCBCHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEe------cCCH-HHHHHHHHHHHHHhC--CCCeEEEE-CCCCCChHHHHHHHHHHh
Confidence 4789999999999999999988731 1111 122567788887765 45677776 343322233223444444
Q ss_pred CCCcceeccccCCCCCHHHHHhhc
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMN 324 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~ 324 (624)
..+ ..+|.=|+...+...++.+.
T Consensus 209 ~~~-i~~iEqP~~~~~~~~~~~l~ 231 (368)
T 3q45_A 209 PYN-IQHCEEPVSRNLYTALPKIR 231 (368)
T ss_dssp GGC-CSCEECCBCGGGGGGHHHHH
T ss_pred hcC-CCEEECCCChhHHHHHHHHH
Confidence 333 45666666554444444443
No 101
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=23.47 E-value=2.9e+02 Score=28.67 Aligned_cols=101 Identities=9% Similarity=0.079 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCC-------------CCCCc----cCCHHHHHHHHHHhCCCCCCceEEEee
Q 006956 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA-------------YGRDI----GVNLPILLNAIVAELPPDGSTMLRIGM 282 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~-------------yg~d~----~~~l~eLL~~l~~~l~~~~~~~iri~~ 282 (624)
..+++++.++++.+.+.|++.+-+-...... ||... .....+.++++.+.+. ....+++.
T Consensus 148 ~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G--~d~~l~vD- 224 (410)
T 2gl5_A 148 LVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMG--DDADIIVE- 224 (410)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHC--SSSEEEEE-
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcC--CCCEEEEE-
Confidence 3579999999999999999998874210011 11110 0123577777777664 45667776
Q ss_pred cCCcchhHHHHHHHHHHhCCCcceeccccCCCCCHHHHHhhc
Q 006956 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324 (624)
Q Consensus 283 ~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M~ 324 (624)
.|-..-.+...++.+.+...+ ..++.=|+...+-+.++.++
T Consensus 225 an~~~~~~~ai~~~~~l~~~~-i~~iE~P~~~~~~~~~~~l~ 265 (410)
T 2gl5_A 225 IHSLLGTNSAIQFAKAIEKYR-IFLYEEPIHPLNSDNMQKVS 265 (410)
T ss_dssp CTTCSCHHHHHHHHHHHGGGC-EEEEECSSCSSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcC-CCeEECCCChhhHHHHHHHH
Confidence 333222233333444444433 45677666554544444443
No 102
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=23.44 E-value=2.1e+02 Score=30.07 Aligned_cols=97 Identities=13% Similarity=0.005 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC
Q 006956 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (624)
+++++.++++.+++.|++.|-+=-..-..-|......-.+.++++++.++ ....+++. .|-..-.+...++.+.+..
T Consensus 179 ~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG--~d~~L~vD-aN~~~~~~~Ai~~~~~Le~ 255 (412)
T 3stp_A 179 SIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIG--YDNDLMLE-CYMGWNLDYAKRMLPKLAP 255 (412)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHC--SSSEEEEE-CTTCSCHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHHh
Confidence 79999999999999999998874210000000000123567788887765 45677776 3433222333334444443
Q ss_pred CCcceeccccCCCCCHHHHHh
Q 006956 302 PCVYSFLHVPVQSGSDAVLSA 322 (624)
Q Consensus 302 ~~v~~~l~IGlQSgsd~vLk~ 322 (624)
.+ ..+|.=|+...+.+.++.
T Consensus 256 ~~-i~~iEeP~~~~d~~~~~~ 275 (412)
T 3stp_A 256 YE-PRWLEEPVIADDVAGYAE 275 (412)
T ss_dssp GC-CSEEECCSCTTCHHHHHH
T ss_pred cC-CCEEECCCCcccHHHHHH
Confidence 33 456766665444333333
No 103
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=22.97 E-value=6.2e+02 Score=25.84 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHH
Q 006956 220 SYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (624)
Q Consensus 220 sr~~e~Iv~EI~~L~~~-GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 298 (624)
..++++++++++.+++. |++.+-+=- +. .+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.
T Consensus 149 ~~~~~~~~~~a~~~~~~~G~~~~K~Kv---g~--~~~-~~d~~~v~avR~~~g--~~~~l~vD-an~~~~~~~a~~~~~~ 219 (372)
T 3tj4_A 149 SFTLEDLLAGSARAVEEDGFTRLKIKV---GH--DDP-NIDIARLTAVRERVD--SAVRIAID-GNGKWDLPTCQRFCAA 219 (372)
T ss_dssp TSCHHHHHHHHHHHHHTTCCCEEEEEC---CC--SSH-HHHHHHHHHHHHHSC--TTCEEEEE-CTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCCCEEEEcC---CC--CCH-HHHHHHHHHHHHHcC--CCCcEEee-CCCCCCHHHHHHHHHH
Confidence 45799999999999999 999988731 11 111 122577888888775 45677776 3433222333334444
Q ss_pred HhCCCcceeccccCCCCCHHHHHhh
Q 006956 299 LRHPCVYSFLHVPVQSGSDAVLSAM 323 (624)
Q Consensus 299 ~~~~~v~~~l~IGlQSgsd~vLk~M 323 (624)
+...+ ..+|.=|+...+-+.++.+
T Consensus 220 l~~~~-i~~iEqP~~~~d~~~~~~l 243 (372)
T 3tj4_A 220 AKDLD-IYWFEEPLWYDDVTSHARL 243 (372)
T ss_dssp TTTSC-EEEEESCSCTTCHHHHHHH
T ss_pred HhhcC-CCEEECCCCchhHHHHHHH
Confidence 44433 4567666654444444333
No 104
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=22.81 E-value=1.7e+02 Score=30.31 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=41.1
Q ss_pred cCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCC-CCCCc-------cCCHHHHHHHHHHhCC
Q 006956 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA-YGRDI-------GVNLPILLNAIVAELP 271 (624)
Q Consensus 211 ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~-yg~d~-------~~~l~eLL~~l~~~l~ 271 (624)
++...|-+ .++++.+++|++.+++.|++.|.|.|.-... ..... ..-+..-++.|++.+|
T Consensus 57 I~SMPGv~-r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~p 124 (342)
T 1h7n_A 57 IDSLPNIN-RIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFP 124 (342)
T ss_dssp CTTSTTCE-EECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCT
T ss_pred CCCCCCce-eeCHHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCC
Confidence 34444544 4589999999999999999999998862210 11111 1236778888888876
No 105
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=22.79 E-value=16 Score=34.68 Aligned_cols=72 Identities=18% Similarity=0.378 Sum_probs=29.6
Q ss_pred eEEEEecCCccChhHHHHHHH-----HHHhcCc-eeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 006956 60 TIYMKTFGCSHNQSDSEYMAG-----QLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (624)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~~~~-----~L~~~G~-~~~~~~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~~~~--VVVg 131 (624)
.+++.++||.= -+.|.|+. .|...|. ..+..+..||+.+| +=+++......+.. +.+.. ++++ |.+|
T Consensus 35 slW~~~~gc~c--C~iEll~~~~p~yDl~rfGi~~~~aSPrqaDiliV-eG~Vt~~m~~~l~~-~~e~~-p~pk~VIAvG 109 (181)
T 3i9v_6 35 SLWPATFGLAC--CAIEMMASTDARNDLARFGSEVFRASPRQADVMIV-AGRLSKKMAPVMRR-VWEQM-PDPKWVISMG 109 (181)
T ss_dssp SCCCEEEECST--HHHHHTTTTTTC----------------CCCCEEE-ESCCBTTTHHHHHH-HHHSS-CSSCCEEEEH
T ss_pred CcccccCCCCc--hHHHHHHhhhchhhHHHcCcccccCCCCCceEEEE-eccCCcccHHHHHH-HHHHc-CCCceEEEee
Confidence 45666666632 22232221 1344455 34556789999999 55787654333222 22222 2333 4467
Q ss_pred ccccC
Q 006956 132 GCVPQ 136 (624)
Q Consensus 132 Gc~aq 136 (624)
-|...
T Consensus 110 sCA~~ 114 (181)
T 3i9v_6 110 ACASS 114 (181)
T ss_dssp HHHHS
T ss_pred ccccc
Confidence 66443
No 106
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=22.17 E-value=4.3e+02 Score=27.53 Aligned_cols=114 Identities=14% Similarity=0.171 Sum_probs=55.5
Q ss_pred HHHHHHHHHCCC--cEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhCCCc
Q 006956 227 VGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (624)
Q Consensus 227 v~EI~~L~~~Gv--keI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 304 (624)
+.|+..+.+.|+ ..|.+.+.. .+ .+-++.+.+. +...+.+. +. +.++.+.+....
T Consensus 109 ~~E~~~~r~~G~~~~~Il~~g~~-----k~-----~~~l~~a~~~----~v~~~~vd--s~----~el~~l~~~a~~--- 165 (419)
T 2plj_A 109 TGEVELVASEGVPADLTIHTHPI-----KR-----DADIRDALAY----GCNVFVVD--NL----NELEKFKAYRDD--- 165 (419)
T ss_dssp HHHHHHHHHTTCCGGGEEECCSS-----CC-----HHHHHHHHHH----TCCEEEEC--SH----HHHHTTGGGTTT---
T ss_pred HHHHHHHHHcCCChhhEEEeCCC-----CC-----HHHHHHHHHC----CCCEEEeC--CH----HHHHHHHHhcCC---
Confidence 578888888898 457776531 11 2333343332 22223332 11 222222222211
Q ss_pred ceeccccCCCCCH-HHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEEE-EEEEcCCCCCHHHHHH
Q 006956 305 YSFLHVPVQSGSD-AVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIAT-DIICGFPGETDEDFNQ 366 (624)
Q Consensus 305 ~~~l~IGlQSgsd-~vLk~M~R-~~t~e~~~e~I~~lr~~~pgi~i~t-d~IvGfPGETeedf~e 366 (624)
..++|-+.++.+ .....|+| |.+.+++.++++.+++. ++.+.. .+=+|--..+.+.+.+
T Consensus 166 -~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~~~~--~l~l~Gl~~H~gs~~~~~~~~~~ 227 (419)
T 2plj_A 166 -VELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAKEW--NIRIKGLSFHVGSQTTNPNKYVE 227 (419)
T ss_dssp -CEEEEEBCC---------CCCSCBCHHHHHHHHHHHHHT--TCEEEEEECCCCTTCCCTHHHHH
T ss_pred -CCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHHHhC--CCcEEEEEEECCCCCCCHHHHHH
Confidence 245555555432 12234777 57889999999999886 876532 2224543333344433
No 107
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=22.04 E-value=5.3e+02 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=16.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCC
Q 006956 320 LSAMNREYTLSDFRTVVDTLIELVPG 345 (624)
Q Consensus 320 Lk~M~R~~t~e~~~e~I~~lr~~~pg 345 (624)
.+.+..+.+.+++.+.++.+|+..+.
T Consensus 72 ~rAL~~G~~~~~~~~~v~~~r~~~~~ 97 (271)
T 3nav_A 72 LRALAAKTTPDICFELIAQIRARNPE 97 (271)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 34555667777777777777765333
No 108
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.01 E-value=3.7e+02 Score=22.86 Aligned_cols=99 Identities=9% Similarity=0.052 Sum_probs=55.4
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceee-CC-----------CC--CCcEEEEeecccccchHHHHHHHHHHHhh
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DN-----------SE--EADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~-~~-----------~~--~ADlviINTCtv~~~ae~~~~~~ir~~k~ 123 (624)
+.+|.|+. -|....+.+...|+..||.++ .. .. .+|+|+++.-. ... ...++++++++
T Consensus 36 ~~~Ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~---~g~~~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVD----DSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKM---DGITCLSNIME 107 (157)
T ss_dssp ECEEEEEC----SCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSS---CHHHHHHHHHH
T ss_pred ceEEEEEe----CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCc---cHHHHHHHHHh
Confidence 34666653 356778889999999999875 21 12 67999996532 221 12344555544
Q ss_pred C--CCCEE-EEccccCcCh--hhhcCCcc-EEEcCCchhHHHHHHHHH
Q 006956 124 A--KKPLV-VAGCVPQGSR--DLKELEGV-SIVGVQQIDRVVEVVEET 165 (624)
Q Consensus 124 ~--~~~VV-VgGc~aq~~~--e~~~~~~d-~VvG~~~~~~l~ell~~~ 165 (624)
. +.+|| +++. ..... ......++ ++.-.-....+.+.|...
T Consensus 108 ~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 108 FDKNARVIMISAL-GKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HCTTCCEEEEESC-CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred hCCCCcEEEEecc-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 3 34555 4443 22211 12233444 466666666777766543
No 109
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=21.88 E-value=5.4e+02 Score=26.28 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHhC
Q 006956 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (624)
Q Consensus 222 ~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 301 (624)
+++++.++++.+.+.|++.|-+-... +. ....+.++++.+.++ ....+++. .|-..-.+...++.+.+..
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~g~------~~-~~~~e~v~avr~a~g--~d~~l~vD-an~~~~~~~a~~~~~~l~~ 214 (379)
T 2rdx_A 145 SEAETRAELARHRAAGYRQFQIKVGA------DW-QSDIDRIRACLPLLE--PGEKAMAD-ANQGWRVDNAIRLARATRD 214 (379)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCS------CH-HHHHHHHHHHGGGSC--TTCEEEEE-CTTCSCHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccC------CH-HHHHHHHHHHHHhcC--CCCEEEEE-CCCCCCHHHHHHHHHHHHh
Confidence 57889999999999999988874221 11 123577888877664 45677776 3432222333345555555
Q ss_pred CCcceeccccCCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC--CHHHHHHHH
Q 006956 302 PCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGMQIATDIICGFPGE--TDEDFNQTV 368 (624)
Q Consensus 302 ~~v~~~l~IGlQSgsd~vLk~M~R~-----------~t~e~~~e~I~~lr~~~pgi~i~td~IvGfPGE--Teedf~eTl 368 (624)
.+ . ++.=|+. +-+.++.+++. ++.+++.++++ +. ... -+++. |.- ....+.+..
T Consensus 215 ~~-i-~iE~P~~--~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~---~~--~~d---~v~ik-~~~~GGit~~~~i~ 281 (379)
T 2rdx_A 215 LD-Y-ILEQPCR--SYEECQQVRRVADQPMKLDECVTGLHMAQRIVA---DR--GAE---ICCLK-ISNLGGLSKARRTR 281 (379)
T ss_dssp SC-C-EEECCSS--SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHH---HT--CCS---EEEEE-TTTTTSHHHHHHHH
T ss_pred CC-e-EEeCCcC--CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHH---cC--CCC---EEEEe-ccccCCHHHHHHHH
Confidence 45 4 7776665 66666666552 24444444443 22 111 11221 111 356667777
Q ss_pred HHHHHcCCC
Q 006956 369 NLIKEYKFP 377 (624)
Q Consensus 369 ~fl~el~~~ 377 (624)
++++..++.
T Consensus 282 ~~A~~~g~~ 290 (379)
T 2rdx_A 282 DFLIDNRMP 290 (379)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCe
Confidence 777777764
No 110
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=21.66 E-value=4.8e+02 Score=26.42 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcc-CCHHHHHHHHHHhCCCCCCceEEE-eecCCcchhHHHHHHHHHHhC
Q 006956 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRI-GMTNPPFILEHLKEIAEVLRH 301 (624)
Q Consensus 224 e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~-~~l~eLL~~l~~~l~~~~~~~iri-~~~~p~~i~~~l~el~~l~~~ 301 (624)
+.+++.++.+++.|+.-|.+-+..+.....+.. ....++++.+.+.. ...+.+ .+-+|..-.+-++...+....
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~----~vplsI~DT~~~~~~~~V~eaal~aga~ 149 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI----DVPLMIIGCGVEEKDAEIFPVIGEALSG 149 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC----SSCEEEECCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC----CceEEEECCCCCCCCHHHHHHHHHhCCC
Confidence 788889999999999988887653211111111 12344666666543 356777 653333222222222222211
Q ss_pred -CCcceeccccCCCCCHHHHHhhc---CC----C--CHHHHHHHHHHHHHhCCCC---EEEEEEEEcCCCCCHHHHHHHH
Q 006956 302 -PCVYSFLHVPVQSGSDAVLSAMN---RE----Y--TLSDFRTVVDTLIELVPGM---QIATDIICGFPGETDEDFNQTV 368 (624)
Q Consensus 302 -~~v~~~l~IGlQSgsd~vLk~M~---R~----~--t~e~~~e~I~~lr~~~pgi---~i~td~IvGfPGETeedf~eTl 368 (624)
..+.+.++-. -.++++.... -+ + +.+.+.+.++.+.++ |+ .+..|-.+|+.|-+.+.-.+++
T Consensus 150 ~k~iINdvs~~---~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~--Gi~~e~IilDPg~g~~g~~~e~~~~~l 224 (310)
T 2h9a_B 150 RNCLLSSATKD---NYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEM--NLAPNRIIMDPLIGALGYGIEYSYSII 224 (310)
T ss_dssp SCCEEEEECTT---THHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTT--TCCGGGEEEECCCCCTTTTHHHHHHHH
T ss_pred CCCEEEECCCC---ccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHC--CCChhhEEEeCCCccccCchHhHHHHH
Confidence 1134554432 2344443321 11 1 467788888888888 77 5788888886675555444666
Q ss_pred HHHHH
Q 006956 369 NLIKE 373 (624)
Q Consensus 369 ~fl~e 373 (624)
+.++.
T Consensus 225 ~~ir~ 229 (310)
T 2h9a_B 225 ERMRL 229 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
No 111
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=21.51 E-value=33 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=17.6
Q ss_pred EEEeCCCCCCCCCCcccCccCCCcc
Q 006956 195 ILPINVGCLGACTYCKTKHARGHLG 219 (624)
Q Consensus 195 ~I~isrGCp~~CsFC~ip~~rG~~R 219 (624)
+|...+|||+ |.+|..+...|-.-
T Consensus 9 ~v~~~~~Cpn-C~~~tt~~~~G~v~ 32 (59)
T 3lpe_B 9 YLTNDEICPI-CHSPTSENWIGLLI 32 (59)
T ss_dssp BEESSSBCTT-TCCBEESCEECEEE
T ss_pred cccCCCCCCC-CCCCccCCEeeEEE
Confidence 3567779998 99998766667533
No 112
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=21.42 E-value=6.7e+02 Score=25.68 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHHHHHHHh
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 300 (624)
.+++++.++++.+.+.|++.+-+-..+ .+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.+.
T Consensus 164 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-----~~~-~~~~e~v~avr~a~g--~~~~l~vD-an~~~~~~~a~~~~~~l~ 234 (392)
T 1tzz_A 164 KGLSMLRGEMRGYLDRGYNVVKMKIGG-----API-EEDRMRIEAVLEEIG--KDAQLAVD-ANGRFNLETGIAYAKMLR 234 (392)
T ss_dssp -CHHHHHHHHHHHHTTTCSEEEEECSS-----SCH-HHHHHHHHHHHHHHT--TTCEEEEE-CTTCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCC-----CCH-HHHHHHHHHHHHhcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988864221 011 123577788877664 45677776 333222233334445554
Q ss_pred CCCcceeccccCCCCCHHHHHhhcC
Q 006956 301 HPCVYSFLHVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 301 ~~~v~~~l~IGlQSgsd~vLk~M~R 325 (624)
..+ ..++.=|+...+-+.++.+++
T Consensus 235 ~~~-i~~iEqP~~~~d~~~~~~l~~ 258 (392)
T 1tzz_A 235 DYP-LFWYEEVGDPLDYALQAALAE 258 (392)
T ss_dssp TSC-CSEEECCSCTTCHHHHHHHTT
T ss_pred HcC-CCeecCCCChhhHHHHHHHHh
Confidence 444 457776766556566666655
No 113
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=21.35 E-value=34 Score=21.55 Aligned_cols=12 Identities=42% Similarity=0.963 Sum_probs=10.1
Q ss_pred chhhHHHHhhhc
Q 006956 552 QNVIGWLLRKRK 563 (624)
Q Consensus 552 ~~~~~~~~~~~~ 563 (624)
+.+|.|+-|||+
T Consensus 14 P~liSWiK~kr~ 25 (26)
T 3qrx_B 14 PALISWIKRKRQ 25 (26)
T ss_pred hHHHHHHHHHhc
Confidence 578999999885
No 114
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=21.24 E-value=2.5e+02 Score=29.19 Aligned_cols=87 Identities=9% Similarity=-0.026 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHCCCcEEEE--eecCCCCCCCCccCCHHHHHHHHHHhCCCCCCceEEEeecCCcc-hhHHHHHHHHHHhC
Q 006956 225 SLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-ILEHLKEIAEVLRH 301 (624)
Q Consensus 225 ~Iv~EI~~L~~~GvkeI~l--~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~-i~~~l~el~~l~~~ 301 (624)
++.++++.+.+.|++.+.+ +|.. +.+. ..-.+.++++.+.++ ....+++. .|... -.+...++.+.+..
T Consensus 155 ~~~~~a~~~~~~G~~~~K~~k~g~~----~~~~-~~d~~~v~avR~a~G--~d~~l~vD-an~~~~~~~~A~~~~~~L~~ 226 (394)
T 3mqt_A 155 AYKPLIAKAKERGAKAVKVCIIPND----KVSD-KEIVAYLRELREVIG--WDMDMMVD-CLYRWTDWQKARWTFRQLED 226 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCT----TSCH-HHHHHHHHHHHHHHC--SSSEEEEE-CTTCCSCHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHcCCCEEEecccCCC----ccCH-HHHHHHHHHHHHHhC--CCCeEEEE-CCCCCCCHHHHHHHHHHHhh
Confidence 4556788888899999988 2210 0111 123567788877765 45677776 44332 22322334444443
Q ss_pred CCcceeccccCCCCCHHHH
Q 006956 302 PCVYSFLHVPVQSGSDAVL 320 (624)
Q Consensus 302 ~~v~~~l~IGlQSgsd~vL 320 (624)
.+ ..++.=|+...+-..+
T Consensus 227 ~~-i~~iEeP~~~~~~~~~ 244 (394)
T 3mqt_A 227 ID-LYFIEACLQHDDLIGH 244 (394)
T ss_dssp GC-CSEEESCSCTTCHHHH
T ss_pred cC-CeEEECCCCcccHHHH
Confidence 33 4567666644443333
No 115
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=21.13 E-value=3.9e+02 Score=28.21 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEe-ecC-CCCCCCCc----cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006956 221 YTVESLVGRVRTVIADGVKEVWLS-SED-TGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l~-g~d-~~~yg~d~----~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~e 294 (624)
.+++++.++++.+++.|++.|.+= |.. ...+|... ...-.+.++++++.++ ....+++. .|...-.+...+
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG--~d~~L~vD-an~~~t~~~A~~ 221 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVG--DKADLLFG-THGQFTTAGAIR 221 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHT--TSSEEEEC-CCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhC--CCCeEEEe-CCCCCCHHHHHH
Confidence 479999999999999999998873 210 00112110 0123567778877764 45667776 333222233333
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHHHhh
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vLk~M 323 (624)
+.+.+...+ ..+|.=|+...+.+.++.+
T Consensus 222 ~~~~Le~~~-i~~iEeP~~~~~~~~~~~l 249 (433)
T 3rcy_A 222 LGQAIEPYS-PLWYEEPVPPDNVGAMAQV 249 (433)
T ss_dssp HHHHHGGGC-CSEEECCSCTTCHHHHHHH
T ss_pred HHHHhhhcC-CCEEECCCChhhHHHHHHH
Confidence 444444333 4577766655444444443
No 116
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=21.03 E-value=3.7e+02 Score=22.58 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEE-EEccccC
Q 006956 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVPQ 136 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~~--~~~VV-VgGc~aq 136 (624)
|....+.+...|...||++... ...+|+|+++...-... ..++++.+++. +.+|| +++. ..
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~----g~~~~~~l~~~~~~~pii~ls~~-~~ 86 (155)
T 1qkk_A 12 DRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMD----GLALFRKILALDPDLPMILVTGH-GD 86 (155)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSC----HHHHHHHHHHHCTTSCEEEEECG-GG
T ss_pred CHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCC----HHHHHHHHHhhCCCCCEEEEECC-CC
Confidence 4556778888999999986532 34589999975332212 23344444433 44555 4443 22
Q ss_pred cCh--hhhcCCcc-EEEcCCchhHHHHHHHHHhc
Q 006956 137 GSR--DLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 137 ~~~--e~~~~~~d-~VvG~~~~~~l~ell~~~~~ 167 (624)
... ......++ ++.-+-....+...+.....
T Consensus 87 ~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 87 IPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp HHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 111 12233444 46666666777777765543
No 117
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=20.73 E-value=1.8e+02 Score=29.85 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=39.8
Q ss_pred cCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCC----CCCC---ccCCHHHHHHHHHHhCC
Q 006956 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA----YGRD---IGVNLPILLNAIVAELP 271 (624)
Q Consensus 211 ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~----yg~d---~~~~l~eLL~~l~~~l~ 271 (624)
++...|-+ ..+++.+++|++.+++.|++.|.|.|..... .|.. ...-+..-++.|++.+|
T Consensus 47 I~SMPGv~-r~sid~l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (330)
T 1pv8_A 47 ITSLPGVA-RYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFP 113 (330)
T ss_dssp CSSSTTCE-EECHHHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHHHHHHHST
T ss_pred cCCCCCce-eecHHHHHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCChHHHHHHHHHHHCC
Confidence 34444544 4589999999999999999999999863210 0111 01235678888888776
No 118
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.59 E-value=3.6e+02 Score=22.15 Aligned_cols=101 Identities=9% Similarity=-0.009 Sum_probs=56.0
Q ss_pred CceEEEEecCCccChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh--C
Q 006956 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--A 124 (624)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~ 124 (624)
+.+|.|+. -|....+.+...|+..||++... ...+|+|+++.-. -.. ...++++++++ .
T Consensus 7 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~---~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 7 KGDVMIVD----DDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM-PGM---DGWDTIRAILDNSL 78 (142)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC-SSS---CHHHHHHHHHHTTC
T ss_pred CCeEEEEc----CCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCC---CHHHHHHHHHhhcc
Confidence 44566653 34667788899999999986432 3458999996532 221 12445666655 3
Q ss_pred C--CCEE-EEccccCcCh-hhhcCCcc-EEEcCCchhHHHHHHHHHh
Q 006956 125 K--KPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETL 166 (624)
Q Consensus 125 ~--~~VV-VgGc~aq~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~ 166 (624)
. .+|| +++....... ......++ ++.-.-....+.+.|....
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 2 3444 4543222111 12233344 4555556666777666543
No 119
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=20.37 E-value=3.4e+02 Score=22.16 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHhcCceeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCE-EEEccccC
Q 006956 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (624)
Q Consensus 71 N~~Dse~~~~~L~~~G~~~~~~-----------~~~ADlviINTCtv~~~ae~~~~~~ir~~k~--~~~~V-VVgGc~aq 136 (624)
+....+.+...|+..||.+... ...+|+++++...-... -.++++++++ .+.+| ++++....
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (132)
T 3crn_A 12 DTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDME----GTELLEKAHKLRPGMKKIMVTGYASL 87 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSB----HHHHHHHHHHHCTTSEEEEEESCCCH
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCc----hHHHHHHHHhhCCCCcEEEEeccccH
Confidence 4556677888888888876432 23579999965322111 2334444443 23444 45554321
Q ss_pred cCh-hhhcCCcc-EEEcCCchhHHHHHHHHHhc
Q 006956 137 GSR-DLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (624)
Q Consensus 137 ~~~-e~~~~~~d-~VvG~~~~~~l~ell~~~~~ 167 (624)
... ......++ ++.-+-....+.+.+.....
T Consensus 88 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 88 ENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 111 12233444 56666677777777766543
No 120
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=20.32 E-value=3.6e+02 Score=28.28 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEE-eecC-CCCCCCCc----cCCHHHHHHHHHHhCCCCCCceEEEeecCCcchhHHHHH
Q 006956 221 YTVESLVGRVRTVIADGVKEVWL-SSED-TGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (624)
Q Consensus 221 r~~e~Iv~EI~~L~~~GvkeI~l-~g~d-~~~yg~d~----~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~e 294 (624)
.+++++.++++.+++.|++.+.+ .|.+ ....|... ...-.+.++++++.++ ....+++. .|...-.+...+
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G--~d~~l~vD-aN~~~~~~~A~~ 219 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVG--SKADLLFG-THGQMVPSSAIR 219 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHT--TSSEEEEC-CCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhC--CCCeEEEE-CCCCCCHHHHHH
Confidence 57999999999999999999987 2211 00001000 0123567777777765 45677776 343322233333
Q ss_pred HHHHHhCCCcceeccccCCCCCHHHHHhhcC
Q 006956 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (624)
Q Consensus 295 l~~l~~~~~v~~~l~IGlQSgsd~vLk~M~R 325 (624)
+.+.+...+ ..+|.=|+...+-..++.+++
T Consensus 220 ~~~~L~~~~-i~~iEeP~~~~d~~~~~~l~~ 249 (412)
T 4e4u_A 220 LAKRLEKYD-PLWFEEPVPPGQEEAIAQVAK 249 (412)
T ss_dssp HHHHHGGGC-CSEEECCSCSSCHHHHHHHHH
T ss_pred HHHHhhhcC-CcEEECCCChhhHHHHHHHHh
Confidence 444444433 467777776666555555544
No 121
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=20.11 E-value=1.9e+02 Score=29.78 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=47.4
Q ss_pred eEEEEEeCCCCCCCCCCcccCccCCCcccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--------cCCHHHHH
Q 006956 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILL 263 (624)
Q Consensus 192 ~~a~I~isrGCp~~CsFC~ip~~rG~~Rsr~~e~Iv~EI~~L~~~GvkeI~l~g~d~~~yg~d~--------~~~l~eLL 263 (624)
++.+|-+..|=.-. --++...|-+ ..+++.+++|++.+++.|++.|.|.|.- ....+|. ..-+..-+
T Consensus 38 LI~PlFV~eg~~~~---~~I~SMPGv~-r~sid~l~~~~~~~~~lGi~~v~LFgv~-~~~~KD~~gs~A~~~~g~v~rai 112 (337)
T 1w5q_A 38 LILPVFVLDGVNQR---ESIPSMPGVE-RLSIDQLLIEAEEWVALGIPALALFPVT-PVEKKSLDAAEAYNPEGIAQRAT 112 (337)
T ss_dssp EEEEEEEESSSSCE---EECTTSTTCE-EEEHHHHHHHHHHHHHTTCCEEEEEECC-CGGGCBSSCGGGGCTTSHHHHHH
T ss_pred ceeeEEEecCCCCc---cccCCCCCce-eeCHHHHHHHHHHHHHCCCCEEEEecCC-CcccCCcccCccCCCCChHHHHH
Confidence 34445555553321 1234444544 4589999999999999999999999861 1111111 12357788
Q ss_pred HHHHHhCC
Q 006956 264 NAIVAELP 271 (624)
Q Consensus 264 ~~l~~~l~ 271 (624)
+.|++.+|
T Consensus 113 r~iK~~~p 120 (337)
T 1w5q_A 113 RALRERFP 120 (337)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 88888876
Done!