Query 006958
Match_columns 624
No_of_seqs 386 out of 2947
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 16:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 9.6E-98 2E-102 824.1 47.8 614 1-624 1-656 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 2.4E-46 5.3E-51 368.7 26.0 239 4-250 1-239 (240)
3 PF01031 Dynamin_M: Dynamin ce 100.0 8.4E-46 1.8E-50 382.0 25.1 270 223-494 2-283 (295)
4 KOG0447 Dynamin-like GTP bindi 100.0 9.8E-30 2.1E-34 262.1 35.1 293 6-307 283-588 (980)
5 smart00302 GED Dynamin GTPase 99.9 2.5E-24 5.3E-29 180.8 12.5 89 532-621 4-92 (92)
6 COG1159 Era GTPase [General fu 99.9 9.2E-24 2E-28 208.3 12.0 235 34-333 5-242 (298)
7 PF00350 Dynamin_N: Dynamin fa 99.9 8E-22 1.7E-26 186.6 16.1 166 38-213 1-168 (168)
8 PF02212 GED: Dynamin GTPase e 99.9 5.5E-22 1.2E-26 167.2 11.5 89 532-621 4-92 (92)
9 TIGR00436 era GTP-binding prot 99.8 1.6E-19 3.4E-24 184.3 12.1 211 37-312 2-213 (270)
10 PRK00089 era GTPase Era; Revie 99.8 1.9E-18 4.1E-23 178.6 12.2 216 34-312 4-220 (292)
11 PRK15494 era GTPase Era; Provi 99.7 7E-18 1.5E-22 177.0 12.5 232 36-332 53-285 (339)
12 COG1160 Predicted GTPases [Gen 99.7 6.6E-17 1.4E-21 168.5 12.0 157 36-258 4-163 (444)
13 PRK09866 hypothetical protein; 99.7 1.7E-12 3.7E-17 140.9 44.0 173 36-220 70-306 (741)
14 PF02421 FeoB_N: Ferrous iron 99.7 1E-16 2.3E-21 147.5 9.1 146 37-250 2-151 (156)
15 COG0486 ThdF Predicted GTPase 99.7 3.7E-15 8.1E-20 155.9 20.2 181 5-256 192-372 (454)
16 KOG1423 Ras-like GTPase ERA [C 99.7 2.8E-16 6E-21 154.1 9.6 214 34-306 71-314 (379)
17 PRK12298 obgE GTPase CgtA; Rev 99.6 8E-15 1.7E-19 156.0 15.8 178 35-273 159-346 (390)
18 COG1084 Predicted GTPase [Gene 99.6 8.2E-15 1.8E-19 146.2 12.4 157 4-219 134-296 (346)
19 TIGR03156 GTP_HflX GTP-binding 99.6 5.3E-14 1.2E-18 148.0 17.8 154 34-252 188-344 (351)
20 PRK12299 obgE GTPase CgtA; Rev 99.6 3E-14 6.6E-19 148.6 14.6 166 34-258 157-326 (335)
21 COG0218 Predicted GTPase [Gene 99.6 7.3E-14 1.6E-18 131.3 14.7 128 34-220 23-152 (200)
22 PRK11058 GTPase HflX; Provisio 99.5 1.2E-13 2.7E-18 148.5 17.1 160 34-256 196-358 (426)
23 PRK05291 trmE tRNA modificatio 99.5 8.5E-13 1.8E-17 143.7 21.9 177 7-259 192-369 (449)
24 TIGR00450 mnmE_trmE_thdF tRNA 99.5 2.9E-12 6.2E-17 138.8 24.3 158 34-259 202-359 (442)
25 cd01878 HflX HflX subfamily. 99.5 2.6E-13 5.6E-18 132.6 14.1 153 34-250 40-195 (204)
26 COG1160 Predicted GTPases [Gen 99.5 1.7E-13 3.7E-18 143.2 12.2 157 34-247 177-335 (444)
27 cd04163 Era Era subfamily. Er 99.5 3.7E-13 8.1E-18 125.8 13.1 123 35-218 3-126 (168)
28 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 3.5E-13 7.7E-18 126.9 12.6 117 36-218 1-117 (168)
29 cd01867 Rab8_Rab10_Rab13_like 99.5 3.6E-13 7.8E-18 127.1 12.2 156 35-256 3-161 (167)
30 cd01898 Obg Obg subfamily. Th 99.5 4E-13 8.7E-18 126.8 12.1 155 37-251 2-162 (170)
31 cd04112 Rab26 Rab26 subfamily. 99.5 6.2E-13 1.3E-17 128.6 13.4 113 136-265 50-168 (191)
32 cd01868 Rab11_like Rab11-like. 99.5 6.5E-13 1.4E-17 124.9 13.2 154 35-254 3-159 (165)
33 PRK00454 engB GTP-binding prot 99.5 5.7E-13 1.2E-17 129.1 12.7 162 34-256 23-190 (196)
34 TIGR02729 Obg_CgtA Obg family 99.5 4.5E-13 9.7E-18 139.8 12.7 126 34-218 156-288 (329)
35 PRK12297 obgE GTPase CgtA; Rev 99.5 8.9E-13 1.9E-17 141.1 15.1 158 35-255 158-322 (424)
36 cd01897 NOG NOG1 is a nucleola 99.5 8.4E-13 1.8E-17 124.5 13.4 25 36-60 1-25 (168)
37 PRK12296 obgE GTPase CgtA; Rev 99.4 7.1E-13 1.5E-17 143.5 14.1 163 34-257 158-337 (500)
38 PRK03003 GTP-binding protein D 99.4 7.8E-13 1.7E-17 145.4 14.7 160 34-258 37-197 (472)
39 cd01865 Rab3 Rab3 subfamily. 99.4 8.8E-13 1.9E-17 124.2 12.9 107 136-256 50-159 (165)
40 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 6.5E-13 1.4E-17 129.0 12.2 166 37-261 2-185 (196)
41 TIGR03598 GTPase_YsxC ribosome 99.4 8.6E-13 1.9E-17 126.2 12.6 125 34-218 17-144 (179)
42 cd01866 Rab2 Rab2 subfamily. 99.4 1.4E-12 3E-17 123.3 13.6 156 35-256 4-162 (168)
43 cd01861 Rab6 Rab6 subfamily. 99.4 9.9E-13 2.1E-17 123.0 12.1 150 37-252 2-154 (161)
44 KOG1191 Mitochondrial GTPase [ 99.4 4.8E-12 1E-16 132.2 18.1 154 7-220 242-406 (531)
45 TIGR03594 GTPase_EngA ribosome 99.4 1.1E-12 2.3E-17 143.3 13.8 155 37-256 1-156 (429)
46 cd04122 Rab14 Rab14 subfamily. 99.4 1.8E-12 3.9E-17 122.2 13.3 153 36-253 3-157 (166)
47 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 1.3E-12 2.8E-17 123.1 12.1 155 36-255 3-159 (166)
48 PRK00093 GTP-binding protein D 99.4 2.4E-12 5.1E-17 140.8 15.8 156 35-255 1-157 (435)
49 PRK03003 GTP-binding protein D 99.4 3.1E-12 6.7E-17 140.7 16.6 127 34-218 210-337 (472)
50 COG0370 FeoB Fe2+ transport sy 99.4 1.4E-12 3E-17 142.4 13.5 155 35-255 3-159 (653)
51 PF01926 MMR_HSR1: 50S ribosom 99.4 1.8E-12 3.9E-17 114.7 11.7 115 37-212 1-116 (116)
52 cd01895 EngA2 EngA2 subfamily. 99.4 3.3E-12 7.1E-17 120.4 14.1 128 35-219 2-129 (174)
53 TIGR03594 GTPase_EngA ribosome 99.4 4.8E-12 1E-16 138.1 17.3 125 34-216 171-296 (429)
54 cd04120 Rab12 Rab12 subfamily. 99.4 1.5E-12 3.2E-17 126.8 11.8 155 37-256 2-159 (202)
55 cd04171 SelB SelB subfamily. 99.4 2E-12 4.4E-17 121.0 12.2 99 135-250 50-156 (164)
56 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 5.4E-13 1.2E-17 123.0 8.0 160 34-260 21-185 (221)
57 PRK09518 bifunctional cytidyla 99.4 3.1E-12 6.8E-17 147.3 16.0 161 34-259 274-435 (712)
58 cd04119 RJL RJL (RabJ-Like) su 99.4 2.7E-12 5.9E-17 120.6 12.8 150 37-255 2-162 (168)
59 cd04113 Rab4 Rab4 subfamily. 99.4 2.8E-12 6E-17 120.1 12.7 151 37-253 2-155 (161)
60 smart00175 RAB Rab subfamily o 99.4 3.5E-12 7.5E-17 119.5 13.3 150 37-256 2-158 (164)
61 cd04127 Rab27A Rab27a subfamil 99.4 2.5E-12 5.4E-17 122.8 12.2 106 136-255 63-172 (180)
62 cd04136 Rap_like Rap-like subf 99.4 1.8E-12 4E-17 121.3 10.9 151 36-253 2-156 (163)
63 cd04145 M_R_Ras_like M-Ras/R-R 99.4 2.4E-12 5.1E-17 120.7 11.7 104 136-253 50-157 (164)
64 cd04109 Rab28 Rab28 subfamily. 99.4 2.3E-12 5E-17 127.0 12.1 158 37-258 2-164 (215)
65 PRK04213 GTP-binding protein; 99.4 3.1E-12 6.6E-17 124.7 12.4 123 34-218 8-145 (201)
66 cd04142 RRP22 RRP22 subfamily. 99.4 4.1E-12 8.9E-17 123.5 13.1 159 37-253 2-167 (198)
67 cd01864 Rab19 Rab19 subfamily. 99.4 2.8E-12 6.2E-17 120.6 11.6 120 35-219 3-124 (165)
68 cd04101 RabL4 RabL4 (Rab-like4 99.4 6.7E-12 1.5E-16 117.8 13.9 103 135-252 51-156 (164)
69 cd01894 EngA1 EngA1 subfamily. 99.4 2E-12 4.3E-17 120.1 10.1 77 136-219 45-121 (157)
70 smart00173 RAS Ras subfamily o 99.4 3E-12 6.5E-17 120.2 11.3 152 37-255 2-157 (164)
71 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 6.6E-12 1.4E-16 120.5 13.6 115 37-217 5-123 (183)
72 cd01860 Rab5_related Rab5-rela 99.4 6.1E-12 1.3E-16 117.9 13.1 148 37-253 3-156 (163)
73 cd01862 Rab7 Rab7 subfamily. 99.4 4.5E-12 9.8E-17 119.8 12.3 155 37-257 2-164 (172)
74 PRK00093 GTP-binding protein D 99.4 1E-11 2.2E-16 135.8 16.7 128 34-218 172-299 (435)
75 cd04157 Arl6 Arl6 subfamily. 99.4 5.6E-12 1.2E-16 117.9 12.7 105 135-253 44-157 (162)
76 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 3.1E-12 6.8E-17 124.7 11.2 154 37-259 2-167 (201)
77 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.2E-11 2.5E-16 114.8 14.4 121 37-219 3-123 (157)
78 cd04175 Rap1 Rap1 subgroup. T 99.4 4.3E-12 9.4E-17 119.2 11.6 106 136-255 49-158 (164)
79 cd04106 Rab23_lke Rab23-like s 99.4 5.6E-12 1.2E-16 118.0 12.3 100 136-250 51-153 (162)
80 cd00154 Rab Rab family. Rab G 99.4 4.7E-12 1E-16 117.2 11.6 145 36-250 1-152 (159)
81 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 4.8E-12 1E-16 120.0 11.7 158 37-259 2-164 (170)
82 cd00880 Era_like Era (E. coli 99.4 1.1E-11 2.4E-16 114.4 13.9 77 135-219 44-120 (163)
83 cd04138 H_N_K_Ras_like H-Ras/N 99.4 4.7E-12 1E-16 118.2 11.3 151 36-253 2-155 (162)
84 cd04139 RalA_RalB RalA/RalB su 99.4 7E-12 1.5E-16 117.3 12.5 153 37-255 2-157 (164)
85 cd01881 Obg_like The Obg-like 99.4 2.6E-12 5.5E-17 121.9 9.4 79 135-219 43-136 (176)
86 cd04111 Rab39 Rab39 subfamily. 99.3 5.8E-12 1.3E-16 123.7 12.1 159 36-259 3-165 (211)
87 cd01890 LepA LepA subfamily. 99.3 6E-12 1.3E-16 120.0 11.8 68 135-217 66-133 (179)
88 cd04110 Rab35 Rab35 subfamily. 99.3 6.3E-12 1.4E-16 122.4 11.9 159 34-259 5-166 (199)
89 cd04144 Ras2 Ras2 subfamily. 99.3 7.6E-12 1.7E-16 120.8 12.2 113 136-261 47-164 (190)
90 cd04123 Rab21 Rab21 subfamily. 99.3 1.2E-11 2.7E-16 115.3 13.0 152 37-254 2-156 (162)
91 PRK09518 bifunctional cytidyla 99.3 2.1E-11 4.5E-16 140.5 17.5 127 34-218 449-576 (712)
92 cd04154 Arl2 Arl2 subfamily. 99.3 1E-11 2.2E-16 118.0 12.5 146 34-250 13-165 (173)
93 cd04125 RabA_like RabA-like su 99.3 9.9E-12 2.1E-16 119.8 12.3 158 36-259 1-161 (188)
94 COG2262 HflX GTPases [General 99.3 1.8E-11 4E-16 126.2 14.8 162 33-257 190-353 (411)
95 cd04114 Rab30 Rab30 subfamily. 99.3 1.3E-11 2.7E-16 116.5 12.7 120 34-218 6-127 (169)
96 cd04176 Rap2 Rap2 subgroup. T 99.3 5.2E-12 1.1E-16 118.5 9.7 150 37-252 3-155 (163)
97 cd01879 FeoB Ferrous iron tran 99.3 8.9E-12 1.9E-16 115.9 11.1 105 136-252 43-149 (158)
98 PRK09554 feoB ferrous iron tra 99.3 1E-11 2.3E-16 142.4 13.9 160 35-256 3-164 (772)
99 cd04124 RabL2 RabL2 subfamily. 99.3 1.1E-11 2.3E-16 116.4 11.6 147 37-254 2-152 (161)
100 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 1.5E-11 3.3E-16 116.8 12.7 150 37-256 4-160 (172)
101 KOG0084 GTPase Rab1/YPT1, smal 99.3 7.2E-12 1.6E-16 116.2 9.5 157 33-255 7-167 (205)
102 COG3596 Predicted GTPase [Gene 99.3 2.3E-11 5E-16 119.0 13.4 123 34-219 37-164 (296)
103 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.5E-11 3.2E-16 116.2 11.9 71 135-219 42-116 (167)
104 cd04156 ARLTS1 ARLTS1 subfamil 99.3 2E-11 4.3E-16 114.1 12.2 112 37-218 1-116 (160)
105 PLN03118 Rab family protein; P 99.3 1.9E-11 4.1E-16 120.1 12.6 161 35-261 14-178 (211)
106 PLN03110 Rab GTPase; Provision 99.3 2.7E-11 5.9E-16 119.5 13.3 157 35-256 12-170 (216)
107 cd04140 ARHI_like ARHI subfami 99.3 1E-11 2.2E-16 116.9 9.9 105 136-254 49-159 (165)
108 cd04116 Rab9 Rab9 subfamily. 99.3 4.1E-11 8.8E-16 113.3 14.0 150 34-252 4-163 (170)
109 PRK15467 ethanolamine utilizat 99.3 3.4E-11 7.4E-16 112.7 13.2 105 140-259 41-146 (158)
110 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.3E-11 2.9E-16 116.8 10.6 143 36-244 3-150 (170)
111 cd04121 Rab40 Rab40 subfamily. 99.3 2.1E-11 4.5E-16 117.5 11.8 155 34-259 5-166 (189)
112 cd04117 Rab15 Rab15 subfamily. 99.3 1.8E-11 3.9E-16 114.9 11.1 151 37-253 2-155 (161)
113 cd04104 p47_IIGP_like p47 (47- 99.3 2.9E-11 6.4E-16 117.5 12.9 121 36-218 2-122 (197)
114 cd00876 Ras Ras family. The R 99.3 2.9E-11 6.3E-16 112.5 12.2 149 37-252 1-153 (160)
115 cd00881 GTP_translation_factor 99.3 2E-11 4.4E-16 117.0 11.4 69 135-218 61-129 (189)
116 PLN03108 Rab family protein; P 99.3 2.6E-11 5.6E-16 119.1 12.3 153 35-256 6-164 (210)
117 COG0699 Predicted GTPases (dyn 99.3 9.6E-10 2.1E-14 123.8 26.3 485 85-616 2-542 (546)
118 cd01876 YihA_EngB The YihA (En 99.3 3.3E-11 7.1E-16 112.9 12.1 123 37-219 1-126 (170)
119 cd01893 Miro1 Miro1 subfamily. 99.3 3.5E-11 7.5E-16 113.5 12.2 114 37-219 2-119 (166)
120 cd04160 Arfrp1 Arfrp1 subfamil 99.3 2.4E-11 5.1E-16 114.4 11.0 70 135-218 49-122 (167)
121 cd04177 RSR1 RSR1 subgroup. R 99.3 2.3E-11 4.9E-16 114.9 10.7 151 37-253 3-157 (168)
122 PTZ00369 Ras-like protein; Pro 99.3 2.6E-11 5.7E-16 117.0 11.3 152 35-256 5-163 (189)
123 cd01863 Rab18 Rab18 subfamily. 99.3 5.3E-11 1.1E-15 111.3 13.1 147 37-250 2-152 (161)
124 cd01853 Toc34_like Toc34-like 99.3 6.7E-11 1.5E-15 118.5 14.2 128 34-219 30-165 (249)
125 cd04159 Arl10_like Arl10-like 99.3 7.1E-11 1.5E-15 109.4 13.5 113 37-219 1-117 (159)
126 cd04151 Arl1 Arl1 subfamily. 99.3 3.3E-11 7.2E-16 112.6 11.2 70 136-218 43-115 (158)
127 cd04158 ARD1 ARD1 subfamily. 99.3 2.7E-11 5.8E-16 114.7 10.3 113 135-261 42-162 (169)
128 TIGR00991 3a0901s02IAP34 GTP-b 99.3 7.9E-11 1.7E-15 119.6 14.3 140 11-218 21-168 (313)
129 smart00178 SAR Sar1p-like memb 99.3 8.8E-11 1.9E-15 112.8 14.0 113 34-217 16-132 (184)
130 KOG0078 GTP-binding protein SE 99.2 2.7E-11 5.8E-16 114.2 9.8 160 33-257 10-171 (207)
131 cd04137 RheB Rheb (Ras Homolog 99.2 6.2E-11 1.4E-15 113.2 12.6 156 37-259 3-162 (180)
132 cd04118 Rab24 Rab24 subfamily. 99.2 3.4E-11 7.3E-16 116.5 10.9 108 136-258 50-164 (193)
133 PLN03071 GTP-binding nuclear p 99.2 2.6E-11 5.6E-16 119.8 10.2 157 34-259 12-171 (219)
134 cd01891 TypA_BipA TypA (tyrosi 99.2 7.5E-11 1.6E-15 114.3 13.2 69 135-218 64-132 (194)
135 KOG0448 Mitofusin 1 GTPase, in 99.2 3.8E-10 8.3E-15 122.1 19.5 183 11-225 95-283 (749)
136 cd04128 Spg1 Spg1p. Spg1p (se 99.2 4.3E-11 9.2E-16 114.8 11.1 114 37-217 2-118 (182)
137 cd04149 Arf6 Arf6 subfamily. 99.2 4.4E-11 9.5E-16 113.2 10.8 114 34-218 8-125 (168)
138 TIGR02528 EutP ethanolamine ut 99.2 7.6E-11 1.7E-15 107.9 12.0 94 139-250 38-135 (142)
139 cd04147 Ras_dva Ras-dva subfam 99.2 4.3E-11 9.3E-16 116.4 10.9 109 136-258 47-161 (198)
140 cd00879 Sar1 Sar1 subfamily. 99.2 1E-10 2.2E-15 112.8 13.4 113 34-217 18-134 (190)
141 cd00878 Arf_Arl Arf (ADP-ribos 99.2 6.5E-11 1.4E-15 110.4 11.5 71 135-219 42-116 (158)
142 cd04148 RGK RGK subfamily. Th 99.2 1.4E-10 3E-15 114.8 13.9 109 136-260 50-163 (221)
143 PF04548 AIG1: AIG1 family; I 99.2 3.1E-11 6.7E-16 118.6 8.9 126 37-220 2-133 (212)
144 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 7.5E-11 1.6E-15 112.2 11.2 113 35-218 15-131 (174)
145 cd00877 Ran Ran (Ras-related n 99.2 7.3E-11 1.6E-15 111.4 11.0 107 136-259 49-158 (166)
146 cd04132 Rho4_like Rho4-like su 99.2 1.1E-10 2.5E-15 112.1 12.3 156 37-259 2-166 (187)
147 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 1.4E-10 3E-15 109.2 12.6 112 37-218 1-114 (164)
148 cd00157 Rho Rho (Ras homology) 99.2 3E-11 6.4E-16 114.1 8.0 116 37-219 2-120 (171)
149 cd01874 Cdc42 Cdc42 subfamily. 99.2 7E-11 1.5E-15 112.6 10.3 115 37-218 3-120 (175)
150 PLN00223 ADP-ribosylation fact 99.2 2.1E-10 4.6E-15 109.9 13.7 113 35-218 17-133 (181)
151 PF00009 GTP_EFTU: Elongation 99.2 2.5E-11 5.4E-16 117.1 7.1 131 35-216 3-135 (188)
152 smart00174 RHO Rho (Ras homolo 99.2 4.7E-11 1E-15 113.2 8.9 69 136-218 46-117 (174)
153 cd01896 DRG The developmentall 99.2 1E-10 2.2E-15 116.5 11.4 24 37-60 2-25 (233)
154 cd04150 Arf1_5_like Arf1-Arf5- 99.2 1.4E-10 3E-15 108.7 11.6 70 135-218 43-116 (159)
155 KOG1489 Predicted GTP-binding 99.2 4.3E-11 9.4E-16 118.7 8.4 153 34-249 195-356 (366)
156 cd04146 RERG_RasL11_like RERG/ 99.2 5.2E-11 1.1E-15 112.0 8.6 70 136-218 47-121 (165)
157 cd04166 CysN_ATPS CysN_ATPS su 99.2 2.1E-10 4.5E-15 112.5 12.6 82 119-218 61-145 (208)
158 smart00177 ARF ARF-like small 99.2 1.8E-10 4E-15 109.6 11.9 69 136-218 57-129 (175)
159 PTZ00133 ADP-ribosylation fact 99.2 3.9E-10 8.5E-15 108.1 13.9 69 136-218 61-133 (182)
160 cd01889 SelB_euk SelB subfamil 99.2 2E-10 4.4E-15 111.1 11.9 67 135-218 67-135 (192)
161 cd04143 Rhes_like Rhes_like su 99.2 2.5E-10 5.3E-15 114.7 12.8 151 37-257 2-168 (247)
162 TIGR00475 selB selenocysteine- 99.2 2.2E-10 4.9E-15 128.4 13.9 107 136-259 50-165 (581)
163 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.2 2.6E-10 5.7E-15 113.1 12.8 118 33-217 11-131 (232)
164 cd04126 Rab20 Rab20 subfamily. 99.2 2.2E-10 4.8E-15 112.9 12.1 111 37-217 2-114 (220)
165 smart00176 RAN Ran (Ras-relate 99.2 1.3E-10 2.8E-15 112.9 10.3 108 136-260 44-154 (200)
166 PRK09602 translation-associate 99.2 7.6E-10 1.6E-14 118.1 17.0 39 36-74 2-40 (396)
167 CHL00189 infB translation init 99.2 2.1E-10 4.5E-15 129.9 13.4 121 33-218 242-362 (742)
168 TIGR00487 IF-2 translation ini 99.2 2.4E-10 5.1E-15 127.7 13.5 118 32-217 84-201 (587)
169 cd01892 Miro2 Miro2 subfamily. 99.2 1.4E-10 3E-15 109.8 10.0 120 34-218 3-123 (169)
170 PF10662 PduV-EutP: Ethanolami 99.2 2.1E-10 4.5E-15 103.5 10.2 24 37-60 3-26 (143)
171 KOG0092 GTPase Rab5/YPT51 and 99.2 2.8E-11 6E-16 112.0 4.6 156 36-261 6-168 (200)
172 TIGR00491 aIF-2 translation in 99.1 4.3E-10 9.4E-15 125.4 14.9 134 33-217 2-135 (590)
173 cd04165 GTPBP1_like GTPBP1-lik 99.1 1.7E-10 3.7E-15 114.1 10.4 75 130-218 78-153 (224)
174 cd04155 Arl3 Arl3 subfamily. 99.1 3.1E-10 6.7E-15 107.5 11.9 115 34-218 13-130 (173)
175 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 2.6E-10 5.6E-15 109.3 10.9 115 36-217 6-123 (182)
176 cd04133 Rop_like Rop subfamily 99.1 1.5E-10 3.3E-15 110.2 9.3 115 37-218 3-120 (176)
177 PRK05306 infB translation init 99.1 2.4E-10 5.2E-15 130.6 12.2 117 32-217 287-403 (787)
178 cd01886 EF-G Elongation factor 99.1 4.4E-10 9.5E-15 114.3 12.6 130 38-218 2-131 (270)
179 PF05049 IIGP: Interferon-indu 99.1 2.2E-10 4.8E-15 119.5 10.5 133 6-215 16-153 (376)
180 cd04134 Rho3 Rho3 subfamily. 99.1 2.3E-10 5E-15 110.4 9.9 115 37-218 2-119 (189)
181 cd01875 RhoG RhoG subfamily. 99.1 6.6E-10 1.4E-14 107.4 12.9 116 36-218 4-122 (191)
182 cd04102 RabL3 RabL3 (Rab-like3 99.1 9.5E-10 2.1E-14 106.9 13.9 70 136-218 54-144 (202)
183 cd04131 Rnd Rnd subfamily. Th 99.1 3.3E-10 7.2E-15 108.2 10.5 114 37-217 3-119 (178)
184 cd01850 CDC_Septin CDC/Septin. 99.1 7.2E-10 1.6E-14 113.1 13.5 136 37-218 6-158 (276)
185 cd01871 Rac1_like Rac1-like su 99.1 6.5E-10 1.4E-14 105.8 12.3 115 37-218 3-120 (174)
186 cd01870 RhoA_like RhoA-like su 99.1 4.8E-10 1E-14 106.4 11.1 116 36-218 2-120 (175)
187 KOG0095 GTPase Rab30, small G 99.1 2.4E-10 5.2E-15 100.6 8.1 121 34-219 6-128 (213)
188 cd01884 EF_Tu EF-Tu subfamily. 99.1 4.4E-10 9.6E-15 108.7 10.9 129 36-218 3-133 (195)
189 cd01899 Ygr210 Ygr210 subfamil 99.1 2E-09 4.3E-14 111.6 16.3 109 38-182 1-109 (318)
190 TIGR00231 small_GTP small GTP- 99.1 5.9E-10 1.3E-14 102.7 11.1 29 36-65 2-30 (161)
191 TIGR00437 feoB ferrous iron tr 99.1 3.5E-10 7.7E-15 127.0 11.3 108 136-257 41-152 (591)
192 cd04130 Wrch_1 Wrch-1 subfamil 99.1 3.4E-10 7.5E-15 107.4 9.5 69 136-218 48-119 (173)
193 cd04135 Tc10 TC10 subfamily. 99.1 4.6E-10 1E-14 106.4 10.3 115 37-218 2-119 (174)
194 KOG1954 Endocytosis/signaling 99.1 9E-10 2E-14 110.9 12.3 168 33-219 56-227 (532)
195 PF00071 Ras: Ras family; Int 99.1 1.9E-10 4.1E-15 107.6 7.1 147 37-252 1-153 (162)
196 cd00882 Ras_like_GTPase Ras-li 99.1 8.2E-10 1.8E-14 100.5 11.1 99 136-248 45-148 (157)
197 cd01888 eIF2_gamma eIF2-gamma 99.1 1.2E-09 2.7E-14 106.6 11.7 105 136-255 83-194 (203)
198 cd04169 RF3 RF3 subfamily. Pe 99.0 1.2E-09 2.7E-14 110.9 11.9 136 36-218 3-138 (267)
199 cd04168 TetM_like Tet(M)-like 99.0 7.1E-10 1.5E-14 110.7 9.7 69 135-218 63-131 (237)
200 cd04105 SR_beta Signal recogni 99.0 2.1E-09 4.6E-14 104.9 12.9 118 36-219 1-125 (203)
201 TIGR01393 lepA GTP-binding pro 99.0 1.2E-09 2.5E-14 122.8 12.1 132 35-217 3-136 (595)
202 KOG1490 GTP-binding protein CR 99.0 8.8E-10 1.9E-14 115.3 9.6 158 3-219 133-297 (620)
203 KOG0093 GTPase Rab3, small G p 99.0 9.6E-10 2.1E-14 96.7 8.3 118 37-219 23-142 (193)
204 PRK10512 selenocysteinyl-tRNA- 99.0 1.6E-09 3.5E-14 122.0 12.5 107 133-258 48-164 (614)
205 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 2.7E-09 5.8E-14 105.3 11.9 115 37-218 3-120 (222)
206 cd01885 EF2 EF2 (for archaea a 99.0 2E-09 4.3E-14 106.1 10.8 67 135-216 72-138 (222)
207 cd04167 Snu114p Snu114p subfam 99.0 2.7E-09 5.8E-14 105.0 11.0 133 37-216 2-136 (213)
208 TIGR00993 3a0901s04IAP86 chlor 99.0 3.4E-09 7.3E-14 115.9 12.4 125 36-218 119-251 (763)
209 PRK04004 translation initiatio 99.0 5.6E-09 1.2E-13 117.0 14.2 66 136-216 71-136 (586)
210 cd04170 EF-G_bact Elongation f 99.0 4.1E-09 8.9E-14 107.5 11.9 69 135-218 63-131 (268)
211 KOG0080 GTPase Rab18, small G 99.0 9.5E-10 2.1E-14 98.2 6.1 163 34-265 10-179 (209)
212 PRK05433 GTP-binding protein L 99.0 5.2E-09 1.1E-13 117.7 13.3 134 34-218 6-141 (600)
213 COG1100 GTPase SAR1 and relate 99.0 7.3E-09 1.6E-13 102.2 12.9 118 36-220 6-128 (219)
214 KOG0394 Ras-related GTPase [Ge 98.9 2.5E-09 5.5E-14 98.1 8.5 154 34-253 8-171 (210)
215 KOG0098 GTPase Rab2, small G p 98.9 3.3E-09 7.2E-14 97.5 8.8 121 34-219 5-127 (216)
216 PF00025 Arf: ADP-ribosylation 98.9 1.2E-09 2.6E-14 104.1 6.2 150 34-254 13-170 (175)
217 PRK12317 elongation factor 1-a 98.9 7.8E-09 1.7E-13 112.6 13.2 141 36-217 7-153 (425)
218 PLN00023 GTP-binding protein; 98.9 5E-09 1.1E-13 107.2 9.8 70 136-218 83-166 (334)
219 COG0536 Obg Predicted GTPase [ 98.9 4.4E-09 9.6E-14 106.0 9.0 125 37-220 161-292 (369)
220 cd01883 EF1_alpha Eukaryotic e 98.9 1.1E-08 2.5E-13 101.0 11.7 82 119-217 61-151 (219)
221 cd01873 RhoBTB RhoBTB subfamil 98.9 7.3E-09 1.6E-13 100.4 10.0 66 136-217 66-134 (195)
222 cd04129 Rho2 Rho2 subfamily. 98.9 6.9E-09 1.5E-13 99.9 9.7 68 136-217 49-119 (187)
223 cd01900 YchF YchF subfamily. 98.9 6.2E-09 1.3E-13 105.3 9.5 103 38-184 1-103 (274)
224 KOG0091 GTPase Rab39, small G 98.9 6.2E-09 1.4E-13 93.3 8.1 153 36-256 9-169 (213)
225 PTZ00258 GTP-binding protein; 98.9 1.1E-08 2.4E-13 108.0 10.9 105 34-181 20-124 (390)
226 CHL00071 tufA elongation facto 98.9 1.2E-08 2.5E-13 110.4 11.3 131 36-219 13-144 (409)
227 KOG0073 GTP-binding ADP-ribosy 98.9 2.1E-08 4.6E-13 90.3 10.7 155 36-261 17-179 (185)
228 KOG0075 GTP-binding ADP-ribosy 98.9 1.2E-08 2.6E-13 90.0 8.9 115 36-219 21-138 (186)
229 COG1163 DRG Predicted GTPase [ 98.8 6E-09 1.3E-13 104.2 7.3 92 35-187 63-154 (365)
230 TIGR03680 eif2g_arch translati 98.8 1.4E-08 3.1E-13 109.6 10.5 67 136-218 80-149 (406)
231 PRK09601 GTP-binding protein Y 98.8 2.1E-08 4.6E-13 104.7 11.0 102 36-184 3-107 (364)
232 KOG0079 GTP-binding protein H- 98.8 5.7E-09 1.2E-13 92.0 5.4 120 34-219 7-128 (198)
233 TIGR01394 TypA_BipA GTP-bindin 98.8 2E-08 4.4E-13 112.6 11.3 69 135-218 63-131 (594)
234 TIGR00484 EF-G translation elo 98.8 1.8E-08 4E-13 116.0 11.1 134 34-218 9-142 (689)
235 TIGR02034 CysN sulfate adenyly 98.8 3.4E-08 7.3E-13 106.7 12.2 82 120-218 65-148 (406)
236 PF08477 Miro: Miro-like prote 98.8 7.8E-09 1.7E-13 91.5 6.0 24 37-60 1-24 (119)
237 PTZ00132 GTP-binding nuclear p 98.8 7.1E-08 1.5E-12 95.0 13.4 102 136-256 58-164 (215)
238 COG0532 InfB Translation initi 98.8 5.6E-08 1.2E-12 103.9 13.2 156 33-256 3-166 (509)
239 cd04103 Centaurin_gamma Centau 98.8 2.8E-08 6E-13 93.0 9.7 97 136-253 47-152 (158)
240 PRK12739 elongation factor G; 98.8 3E-08 6.5E-13 114.2 11.9 134 34-218 7-140 (691)
241 PRK12735 elongation factor Tu; 98.8 3.5E-08 7.7E-13 106.2 11.8 70 134-218 73-143 (396)
242 PRK00741 prfC peptide chain re 98.8 4.8E-08 1E-12 108.2 12.7 138 34-218 9-146 (526)
243 PRK05506 bifunctional sulfate 98.8 3.8E-08 8.2E-13 112.3 12.2 69 133-217 101-171 (632)
244 PLN03127 Elongation factor Tu; 98.8 3.1E-08 6.7E-13 107.7 10.9 130 36-218 62-192 (447)
245 TIGR00485 EF-Tu translation el 98.8 3.1E-08 6.7E-13 106.7 10.6 130 36-218 13-143 (394)
246 PRK12736 elongation factor Tu; 98.8 3.7E-08 8.1E-13 105.9 11.2 130 36-218 13-143 (394)
247 PRK00007 elongation factor G; 98.8 3E-08 6.5E-13 114.1 11.0 135 34-219 9-143 (693)
248 PRK10218 GTP-binding protein; 98.8 3.8E-08 8.2E-13 110.4 11.2 131 34-218 4-135 (607)
249 KOG0087 GTPase Rab11/YPT3, sma 98.8 2.6E-08 5.7E-13 93.7 8.3 119 33-217 12-133 (222)
250 PRK05124 cysN sulfate adenylyl 98.8 6.7E-08 1.5E-12 106.1 12.9 146 34-218 26-175 (474)
251 KOG2486 Predicted GTPase [Gene 98.7 3.5E-08 7.6E-13 96.7 9.3 127 34-218 135-263 (320)
252 TIGR00483 EF-1_alpha translati 98.7 7.6E-08 1.7E-12 104.8 13.0 82 120-217 70-155 (426)
253 PRK09435 membrane ATPase/prote 98.7 2.3E-07 5.1E-12 96.3 15.1 25 34-58 55-79 (332)
254 PRK00049 elongation factor Tu; 98.7 5.4E-08 1.2E-12 104.7 10.7 129 36-217 13-142 (396)
255 PLN03126 Elongation factor Tu; 98.7 6.3E-08 1.4E-12 105.9 11.1 130 36-218 82-212 (478)
256 TIGR00503 prfC peptide chain r 98.7 7E-08 1.5E-12 106.9 11.6 137 34-217 10-146 (527)
257 COG2229 Predicted GTPase [Gene 98.7 2.6E-07 5.6E-12 85.5 12.9 131 33-227 8-147 (187)
258 cd01882 BMS1 Bms1. Bms1 is an 98.7 6.5E-08 1.4E-12 95.9 9.6 70 132-219 79-149 (225)
259 TIGR02836 spore_IV_A stage IV 98.7 6.3E-07 1.4E-11 93.4 16.9 143 36-216 18-193 (492)
260 KOG1145 Mitochondrial translat 98.7 2.7E-07 5.8E-12 97.9 14.2 147 33-247 151-300 (683)
261 PF00735 Septin: Septin; Inte 98.7 5.6E-08 1.2E-12 99.2 9.0 138 37-219 6-158 (281)
262 PRK04000 translation initiatio 98.7 1E-07 2.3E-12 102.9 11.1 23 36-58 10-32 (411)
263 PF09439 SRPRB: Signal recogni 98.7 3.6E-08 7.8E-13 93.1 6.1 119 34-219 2-128 (181)
264 TIGR00490 aEF-2 translation el 98.6 1.4E-07 3.1E-12 109.0 12.0 70 133-217 83-152 (720)
265 PRK13351 elongation factor G; 98.6 2.2E-07 4.9E-12 107.2 12.2 134 34-218 7-140 (687)
266 PTZ00327 eukaryotic translatio 98.6 4.9E-07 1.1E-11 98.3 12.8 67 136-218 117-186 (460)
267 PRK07560 elongation factor EF- 98.6 2.9E-07 6.2E-12 106.7 11.7 133 34-216 19-152 (731)
268 PLN00116 translation elongatio 98.6 3.7E-07 8E-12 107.1 12.4 67 135-216 97-163 (843)
269 COG4917 EutP Ethanolamine util 98.6 1.4E-07 3.1E-12 81.3 6.5 103 36-217 2-104 (148)
270 PTZ00416 elongation factor 2; 98.5 4.4E-07 9.6E-12 106.3 12.1 133 34-216 18-157 (836)
271 PLN00043 elongation factor 1-a 98.5 1E-06 2.2E-11 96.1 12.7 67 133-216 82-158 (447)
272 KOG0070 GTP-binding ADP-ribosy 98.5 3E-07 6.4E-12 85.3 7.1 151 35-257 17-175 (181)
273 KOG0081 GTPase Rab27, small G 98.5 1E-07 2.2E-12 85.1 3.5 107 136-255 67-176 (219)
274 KOG0395 Ras-related GTPase [Ge 98.5 4.5E-07 9.8E-12 87.6 8.3 145 35-250 3-155 (196)
275 cd01858 NGP_1 NGP-1. Autoanti 98.5 4.3E-07 9.2E-12 84.8 7.7 28 36-63 103-130 (157)
276 KOG0410 Predicted GTP binding 98.5 4.6E-07 1E-11 90.5 8.1 127 33-217 176-308 (410)
277 TIGR00750 lao LAO/AO transport 98.5 7.2E-06 1.6E-10 85.0 17.4 25 34-58 33-57 (300)
278 KOG0086 GTPase Rab4, small G p 98.4 1.7E-06 3.7E-11 76.9 9.8 120 34-218 8-129 (214)
279 KOG0097 GTPase Rab14, small G 98.4 1.6E-06 3.5E-11 75.9 9.1 120 34-219 10-132 (215)
280 cd04178 Nucleostemin_like Nucl 98.4 4.7E-07 1E-11 85.7 6.2 29 35-63 117-145 (172)
281 cd01849 YlqF_related_GTPase Yl 98.4 5.1E-07 1.1E-11 84.1 5.6 39 34-72 99-138 (155)
282 cd01855 YqeH YqeH. YqeH is an 98.4 1E-06 2.2E-11 85.0 7.8 25 36-60 128-152 (190)
283 KOG1707 Predicted Ras related/ 98.3 1.4E-06 2.9E-11 93.6 8.8 120 34-221 8-133 (625)
284 PRK12740 elongation factor G; 98.3 2E-06 4.3E-11 99.2 10.8 69 135-218 59-127 (668)
285 COG5019 CDC3 Septin family pro 98.3 3.9E-06 8.5E-11 86.0 11.5 82 136-219 82-178 (373)
286 PTZ00141 elongation factor 1- 98.3 4.1E-06 9E-11 91.3 12.4 66 133-215 82-157 (446)
287 COG0012 Predicted GTPase, prob 98.3 9.4E-07 2E-11 91.1 6.9 104 36-181 3-106 (372)
288 KOG2655 Septin family protein 98.3 3.1E-06 6.7E-11 87.5 10.5 83 136-220 79-175 (366)
289 TIGR01425 SRP54_euk signal rec 98.3 5.7E-06 1.2E-10 88.6 12.7 80 136-227 183-263 (429)
290 PTZ00099 rab6; Provisional 98.3 2E-06 4.4E-11 81.9 8.0 117 135-265 28-147 (176)
291 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.3E-06 2.9E-11 79.9 6.5 25 36-60 84-108 (141)
292 PRK11889 flhF flagellar biosyn 98.3 1.4E-05 3.1E-10 83.8 14.2 150 36-227 242-401 (436)
293 COG5256 TEF1 Translation elong 98.2 1.1E-05 2.5E-10 83.8 12.9 83 120-219 70-161 (428)
294 KOG4252 GTP-binding protein [S 98.2 2.6E-07 5.6E-12 84.3 0.4 70 136-219 69-140 (246)
295 KOG0088 GTPase Rab21, small G 98.2 1.8E-06 3.9E-11 77.3 5.6 116 37-218 15-133 (218)
296 PRK13768 GTPase; Provisional 98.2 8.4E-06 1.8E-10 82.3 10.9 75 136-219 97-178 (253)
297 KOG0090 Signal recognition par 98.2 4.7E-06 1E-10 78.9 8.3 72 136-220 82-162 (238)
298 COG0480 FusA Translation elong 98.2 4.1E-06 9E-11 94.8 9.4 135 34-218 9-143 (697)
299 KOG1547 Septin CDC10 and relat 98.2 7.7E-06 1.7E-10 78.5 9.6 81 136-218 104-199 (336)
300 TIGR03596 GTPase_YlqF ribosome 98.2 5.7E-06 1.2E-10 84.7 9.4 29 35-63 118-146 (276)
301 KOG0076 GTP-binding ADP-ribosy 98.2 2.5E-06 5.3E-11 78.0 5.5 111 136-259 69-186 (197)
302 COG1161 Predicted GTPases [Gen 98.2 3.1E-06 6.6E-11 88.4 6.7 32 36-72 133-164 (322)
303 PRK12289 GTPase RsgA; Reviewed 98.2 4E-06 8.7E-11 88.2 7.3 24 37-60 174-197 (352)
304 PF00448 SRP54: SRP54-type pro 98.1 2.8E-06 6.1E-11 82.2 5.6 150 37-227 3-164 (196)
305 PRK09563 rbgA GTPase YlqF; Rev 98.1 1.2E-05 2.6E-10 82.8 10.3 26 35-60 121-146 (287)
306 TIGR00092 GTP-binding protein 98.1 6.2E-06 1.4E-10 86.4 8.1 104 36-183 3-107 (368)
307 cd01851 GBP Guanylate-binding 98.1 8.7E-06 1.9E-10 80.6 8.8 32 34-66 6-39 (224)
308 KOG1532 GTPase XAB1, interacts 98.1 1.6E-05 3.4E-10 78.0 10.1 152 34-219 18-197 (366)
309 PF04670 Gtr1_RagA: Gtr1/RagA 98.1 1.2E-05 2.5E-10 79.6 9.2 119 37-219 1-127 (232)
310 KOG1491 Predicted GTP-binding 98.1 4.7E-06 1E-10 84.1 6.3 101 34-180 19-122 (391)
311 PRK14723 flhF flagellar biosyn 98.1 2.5E-05 5.5E-10 88.8 12.8 151 37-227 187-347 (767)
312 KOG1486 GTP-binding protein DR 98.1 4.6E-06 1E-10 80.5 5.6 24 36-59 63-86 (364)
313 PRK12726 flagellar biosynthesi 98.1 3.4E-05 7.3E-10 80.7 12.3 151 35-227 206-366 (407)
314 PRK12288 GTPase RsgA; Reviewed 98.1 6.8E-06 1.5E-10 86.4 7.2 24 37-60 207-230 (347)
315 TIGR00157 ribosome small subun 98.1 1.1E-05 2.3E-10 81.1 8.1 25 36-60 121-145 (245)
316 PRK06731 flhF flagellar biosyn 98.0 7.8E-05 1.7E-09 75.5 13.8 152 34-227 74-235 (270)
317 cd03112 CobW_like The function 98.0 2.3E-05 5.1E-10 73.2 9.1 23 36-58 1-23 (158)
318 cd01856 YlqF YlqF. Proteins o 98.0 8.9E-06 1.9E-10 77.1 6.3 27 34-60 114-140 (171)
319 KOG3883 Ras family small GTPas 98.0 5.9E-05 1.3E-09 67.5 10.8 72 136-220 60-135 (198)
320 PF03308 ArgK: ArgK protein; 98.0 2.5E-05 5.5E-10 77.1 9.2 25 34-58 28-52 (266)
321 PRK14722 flhF flagellar biosyn 98.0 3.5E-05 7.6E-10 81.3 10.8 23 36-58 138-160 (374)
322 PRK14974 cell division protein 98.0 1.3E-05 2.9E-10 83.6 7.5 81 136-227 223-303 (336)
323 PRK14845 translation initiatio 98.0 3.5E-05 7.5E-10 90.9 11.7 68 135-217 525-592 (1049)
324 PRK12727 flagellar biosynthesi 98.0 6.5E-05 1.4E-09 81.9 12.7 80 136-227 429-508 (559)
325 PRK14721 flhF flagellar biosyn 98.0 8.6E-05 1.9E-09 79.6 13.6 151 36-227 192-350 (420)
326 PRK12723 flagellar biosynthesi 98.0 6.5E-05 1.4E-09 79.9 12.6 152 36-227 175-336 (388)
327 PRK10416 signal recognition pa 98.0 4.7E-05 1E-09 79.2 11.2 84 135-227 196-283 (318)
328 KOG0074 GTP-binding ADP-ribosy 98.0 3E-05 6.6E-10 68.3 8.1 114 36-218 18-134 (185)
329 PRK12724 flagellar biosynthesi 98.0 5.3E-05 1.2E-09 80.5 11.6 82 136-227 300-383 (432)
330 KOG0071 GTP-binding ADP-ribosy 98.0 3.2E-05 6.9E-10 68.1 7.9 132 35-238 17-154 (180)
331 cd03114 ArgK-like The function 98.0 8.8E-05 1.9E-09 68.4 11.4 22 37-58 1-22 (148)
332 PRK05703 flhF flagellar biosyn 97.9 7.3E-05 1.6E-09 80.9 12.3 152 36-227 222-381 (424)
333 COG1419 FlhF Flagellar GTP-bin 97.9 9.9E-05 2.2E-09 77.4 12.3 151 35-227 203-362 (407)
334 PF03193 DUF258: Protein of un 97.9 9.7E-06 2.1E-10 75.1 4.4 25 36-60 36-60 (161)
335 PRK13796 GTPase YqeH; Provisio 97.9 1.4E-05 3E-10 85.1 6.1 24 36-59 161-184 (365)
336 KOG0083 GTPase Rab26/Rab37, sm 97.9 2.4E-06 5.1E-11 74.2 0.2 97 136-249 47-149 (192)
337 cd01859 MJ1464 MJ1464. This f 97.9 4.7E-05 1E-09 70.9 8.8 26 35-60 101-126 (156)
338 TIGR03597 GTPase_YqeH ribosome 97.9 1.7E-05 3.7E-10 84.2 6.3 24 36-59 155-178 (360)
339 KOG0462 Elongation factor-type 97.9 6.9E-05 1.5E-09 80.2 10.3 135 34-219 59-193 (650)
340 PRK00771 signal recognition pa 97.9 0.00022 4.8E-09 77.1 14.1 80 136-227 176-256 (437)
341 COG1703 ArgK Putative periplas 97.8 0.0013 2.8E-08 66.1 17.5 25 34-58 50-74 (323)
342 KOG1424 Predicted GTP-binding 97.8 1.5E-05 3.2E-10 84.7 4.0 27 34-60 313-339 (562)
343 PF03029 ATP_bind_1: Conserved 97.8 2.7E-05 5.9E-10 77.7 5.3 35 40-80 1-35 (238)
344 cd03115 SRP The signal recogni 97.8 0.00017 3.8E-09 68.3 10.4 78 136-225 83-161 (173)
345 TIGR00064 ftsY signal recognit 97.8 0.00018 4E-09 73.2 11.0 83 136-227 155-241 (272)
346 KOG1144 Translation initiation 97.7 0.00016 3.6E-09 79.5 10.8 131 33-216 473-605 (1064)
347 COG1162 Predicted GTPases [Gen 97.7 7.2E-05 1.6E-09 75.7 7.2 23 36-58 165-187 (301)
348 PRK00098 GTPase RsgA; Reviewed 97.7 0.00016 3.5E-09 74.8 9.8 24 36-59 165-188 (298)
349 COG1217 TypA Predicted membran 97.7 8.2E-05 1.8E-09 78.1 7.3 132 34-220 4-137 (603)
350 cd01854 YjeQ_engC YjeQ/EngC. 97.7 8.8E-05 1.9E-09 76.4 7.5 25 36-60 162-186 (287)
351 PRK10867 signal recognition pa 97.7 0.00025 5.5E-09 76.5 11.2 81 136-227 184-264 (433)
352 TIGR00073 hypB hydrogenase acc 97.7 0.00013 2.9E-09 71.3 8.4 25 34-58 21-45 (207)
353 KOG0072 GTP-binding ADP-ribosy 97.6 9.5E-05 2.1E-09 65.5 5.7 109 134-257 60-176 (182)
354 KOG0468 U5 snRNP-specific prot 97.6 0.00013 2.9E-09 79.3 7.7 134 34-216 127-262 (971)
355 TIGR00959 ffh signal recogniti 97.6 0.00035 7.6E-09 75.4 10.8 81 136-227 183-263 (428)
356 COG0481 LepA Membrane GTPase L 97.6 0.00018 4E-09 75.7 8.2 135 34-219 8-144 (603)
357 PRK06995 flhF flagellar biosyn 97.6 0.00037 8.1E-09 76.0 10.9 81 136-227 335-415 (484)
358 COG4108 PrfC Peptide chain rel 97.6 0.00029 6.3E-09 73.7 9.3 136 35-219 12-149 (528)
359 KOG3859 Septins (P-loop GTPase 97.5 0.0002 4.3E-09 70.4 7.2 133 37-219 44-192 (406)
360 TIGR00101 ureG urease accessor 97.5 0.00064 1.4E-08 66.0 10.3 23 36-58 2-24 (199)
361 COG3276 SelB Selenocysteine-sp 97.5 0.00041 9E-09 73.0 9.5 108 136-259 50-161 (447)
362 KOG0393 Ras-related small GTPa 97.5 5.1E-05 1.1E-09 72.3 2.5 117 36-218 5-124 (198)
363 KOG2203 GTP-binding protein [G 97.5 0.15 3.3E-06 55.2 27.7 28 33-60 35-62 (772)
364 KOG1143 Predicted translation 97.4 0.00056 1.2E-08 69.9 9.1 144 37-220 169-320 (591)
365 COG0050 TufB GTPases - transla 97.4 0.0015 3.2E-08 65.1 11.1 130 36-219 13-144 (394)
366 COG5257 GCD11 Translation init 97.4 0.00046 9.9E-09 69.5 7.2 41 37-79 12-52 (415)
367 KOG0077 Vesicle coat complex C 97.4 0.0018 4E-08 59.0 10.3 128 14-219 7-137 (193)
368 KOG0458 Elongation factor 1 al 97.3 0.0014 3E-08 71.1 11.1 114 119-248 239-370 (603)
369 COG3640 CooC CO dehydrogenase 97.3 0.0038 8.3E-08 60.6 11.9 86 137-246 135-222 (255)
370 KOG2485 Conserved ATP/GTP bind 97.2 0.00042 9.1E-09 69.7 5.3 26 34-59 142-167 (335)
371 COG0541 Ffh Signal recognition 97.2 0.0046 1E-07 65.4 13.2 78 136-225 183-261 (451)
372 TIGR03348 VI_IcmF type VI secr 97.2 0.003 6.5E-08 77.2 13.7 56 6-64 82-138 (1169)
373 COG5192 BMS1 GTP-binding prote 97.1 0.0023 5E-08 68.6 9.8 112 34-220 67-180 (1077)
374 KOG1487 GTP-binding protein DR 97.1 0.00077 1.7E-08 65.8 5.7 30 36-66 60-89 (358)
375 COG2895 CysN GTPases - Sulfate 97.0 0.0044 9.5E-08 63.4 10.3 149 34-221 5-157 (431)
376 PF05879 RHD3: Root hair defec 97.0 1.2 2.7E-05 51.9 32.0 22 41-63 1-22 (742)
377 PRK10463 hydrogenase nickel in 96.9 0.0059 1.3E-07 62.2 10.4 25 34-58 103-127 (290)
378 KOG2484 GTPase [General functi 96.9 0.0009 2E-08 69.4 4.2 31 34-64 251-281 (435)
379 COG1136 SalX ABC-type antimicr 96.7 0.017 3.6E-07 56.7 11.3 55 159-214 147-203 (226)
380 KOG0467 Translation elongation 96.7 0.0023 5.1E-08 71.1 5.4 129 34-215 8-136 (887)
381 KOG0461 Selenocysteine-specifi 96.5 0.029 6.3E-07 57.2 11.3 65 136-220 70-139 (522)
382 KOG0780 Signal recognition par 96.5 0.0096 2.1E-07 61.7 8.0 76 134-222 182-259 (483)
383 KOG2749 mRNA cleavage and poly 96.5 0.051 1.1E-06 55.9 13.1 42 34-81 102-143 (415)
384 KOG1673 Ras GTPases [General f 96.3 0.0043 9.2E-08 55.9 4.0 114 36-216 21-137 (205)
385 PRK01889 GTPase RsgA; Reviewed 96.3 0.0057 1.2E-07 65.0 5.7 23 37-59 197-219 (356)
386 KOG4423 GTP-binding protein-li 96.2 0.0005 1.1E-08 63.8 -2.4 166 34-267 24-197 (229)
387 COG0552 FtsY Signal recognitio 96.1 0.019 4.1E-07 58.9 8.0 82 136-226 222-307 (340)
388 cd01859 MJ1464 MJ1464. This f 96.1 0.011 2.5E-07 54.7 6.0 90 162-255 2-91 (156)
389 KOG2423 Nucleolar GTPase [Gene 96.1 0.0086 1.9E-07 62.0 5.2 24 37-60 309-332 (572)
390 PRK11537 putative GTP-binding 96.0 0.028 6.1E-07 58.7 9.0 25 34-58 3-27 (318)
391 KOG4181 Uncharacterized conser 96.0 0.034 7.4E-07 56.7 8.9 27 33-59 186-212 (491)
392 KOG1534 Putative transcription 96.0 0.027 5.9E-07 53.7 7.7 22 37-58 5-26 (273)
393 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.09 1.9E-06 48.1 10.7 23 37-59 28-50 (144)
394 COG1341 Predicted GTPase or GT 95.8 0.059 1.3E-06 56.8 10.4 25 34-58 72-96 (398)
395 COG3840 ThiQ ABC-type thiamine 95.8 0.0077 1.7E-07 56.3 3.3 29 36-65 26-54 (231)
396 cd01855 YqeH YqeH. YqeH is an 95.6 0.068 1.5E-06 51.3 9.5 57 159-219 21-77 (190)
397 TIGR03499 FlhF flagellar biosy 95.6 0.016 3.5E-07 59.5 5.3 23 36-58 195-217 (282)
398 KOG0463 GTP-binding protein GP 95.6 0.032 6.9E-07 57.4 7.2 76 128-219 211-289 (641)
399 COG4988 CydD ABC-type transpor 95.6 0.067 1.5E-06 58.8 10.1 28 37-66 349-376 (559)
400 TIGR02868 CydC thiol reductant 95.5 0.047 1E-06 61.4 9.2 52 159-212 475-527 (529)
401 TIGR00157 ribosome small subun 95.5 0.0077 1.7E-07 60.5 2.5 92 158-250 22-113 (245)
402 PF13555 AAA_29: P-loop contai 95.5 0.013 2.9E-07 45.0 3.1 23 36-58 24-46 (62)
403 KOG3886 GTP-binding protein [S 95.5 0.017 3.7E-07 55.8 4.5 71 136-220 53-133 (295)
404 KOG0460 Mitochondrial translat 95.5 0.071 1.5E-06 54.5 9.0 133 34-219 51-186 (449)
405 cd00071 GMPK Guanosine monopho 95.5 0.013 2.7E-07 53.3 3.5 33 38-72 2-38 (137)
406 KOG0464 Elongation factor G [T 95.5 0.0059 1.3E-07 63.3 1.3 135 34-219 36-170 (753)
407 KOG1533 Predicted GTPase [Gene 95.4 0.028 6E-07 54.6 5.7 20 38-57 5-24 (290)
408 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.14 3.1E-06 51.1 10.3 31 37-69 32-62 (254)
409 COG5258 GTPBP1 GTPase [General 95.2 0.027 5.9E-07 58.3 5.1 67 137-219 202-271 (527)
410 PRK01889 GTPase RsgA; Reviewed 95.2 0.022 4.8E-07 60.5 4.8 48 170-218 110-157 (356)
411 PRK13695 putative NTPase; Prov 95.2 0.074 1.6E-06 50.3 7.9 22 37-58 2-23 (174)
412 smart00010 small_GTPase Small 95.1 0.074 1.6E-06 46.5 7.1 24 37-60 2-25 (124)
413 TIGR02475 CobW cobalamin biosy 95.0 0.2 4.3E-06 52.9 11.2 25 34-58 3-27 (341)
414 cd01858 NGP_1 NGP-1. Autoanti 95.0 0.034 7.3E-07 51.6 4.8 52 166-219 2-55 (157)
415 KOG0096 GTPase Ran/TC4/GSP1 (n 95.0 0.076 1.7E-06 49.9 6.8 152 36-257 11-166 (216)
416 TIGR03263 guanyl_kin guanylate 94.9 0.024 5.1E-07 53.9 3.7 22 37-58 3-24 (180)
417 cd03280 ABC_MutS2 MutS2 homolo 94.9 0.18 3.9E-06 48.9 9.8 20 37-56 30-49 (200)
418 COG1101 PhnK ABC-type uncharac 94.9 0.023 5E-07 54.7 3.3 28 36-64 33-60 (263)
419 PRK12289 GTPase RsgA; Reviewed 94.8 0.036 7.9E-07 58.5 5.1 56 163-218 80-135 (352)
420 cd01130 VirB11-like_ATPase Typ 94.8 0.022 4.8E-07 54.6 3.2 30 36-67 26-55 (186)
421 PF03205 MobB: Molybdopterin g 94.8 0.021 4.5E-07 52.1 2.8 23 36-58 1-23 (140)
422 COG0194 Gmk Guanylate kinase [ 94.8 0.021 4.6E-07 53.8 2.8 36 37-72 6-41 (191)
423 PF00005 ABC_tran: ABC transpo 94.8 0.022 4.8E-07 51.3 2.8 23 37-59 13-35 (137)
424 TIGR03796 NHPM_micro_ABC1 NHPM 94.7 0.12 2.6E-06 60.3 9.7 51 159-212 620-670 (710)
425 TIGR01360 aden_kin_iso1 adenyl 94.7 0.023 5E-07 54.2 2.9 23 34-56 2-24 (188)
426 PRK00300 gmk guanylate kinase; 94.7 0.027 5.8E-07 54.8 3.4 37 36-72 6-43 (205)
427 PRK11174 cysteine/glutathione 94.7 0.16 3.4E-06 57.9 10.2 25 37-63 378-402 (588)
428 PRK13657 cyclic beta-1,2-gluca 94.6 0.13 2.7E-06 58.8 9.3 23 37-59 363-385 (588)
429 TIGR03596 GTPase_YlqF ribosome 94.6 0.1 2.2E-06 53.5 7.7 52 163-218 12-63 (276)
430 PF13521 AAA_28: AAA domain; P 94.6 0.019 4E-07 53.7 2.1 22 37-58 1-22 (163)
431 COG4107 PhnK ABC-type phosphon 94.6 0.028 6.1E-07 52.1 3.1 31 37-69 34-64 (258)
432 COG1116 TauB ABC-type nitrate/ 94.6 0.027 5.8E-07 55.6 3.2 27 37-64 31-57 (248)
433 COG0523 Putative GTPases (G3E 94.5 0.47 1E-05 49.5 12.2 25 35-59 1-25 (323)
434 PRK14737 gmk guanylate kinase; 94.5 0.037 8.1E-07 53.1 3.8 38 35-72 4-42 (186)
435 cd01856 YlqF YlqF. Proteins o 94.5 0.088 1.9E-06 49.6 6.3 55 160-218 7-61 (171)
436 cd03243 ABC_MutS_homologs The 94.4 0.44 9.5E-06 46.2 11.4 23 37-59 31-53 (202)
437 PRK11160 cysteine/glutathione 94.3 0.18 3.9E-06 57.4 9.6 22 37-58 368-389 (574)
438 TIGR03797 NHPM_micro_ABC2 NHPM 94.3 0.18 3.9E-06 58.7 9.8 51 159-212 593-643 (686)
439 PF06858 NOG1: Nucleolar GTP-b 94.2 0.084 1.8E-06 39.7 4.3 52 163-214 3-58 (58)
440 COG3523 IcmF Type VI protein s 94.2 0.18 3.9E-06 60.6 9.4 83 136-219 174-272 (1188)
441 KOG0469 Elongation factor 2 [T 94.1 0.052 1.1E-06 57.9 4.2 66 136-216 98-163 (842)
442 cd03225 ABC_cobalt_CbiO_domain 94.1 0.046 9.9E-07 53.4 3.7 29 37-67 29-57 (211)
443 PRK09563 rbgA GTPase YlqF; Rev 94.1 0.13 2.8E-06 53.0 7.2 52 163-218 15-66 (287)
444 TIGR02203 MsbA_lipidA lipid A 94.1 0.13 2.7E-06 58.5 7.8 23 37-59 360-382 (571)
445 cd01857 HSR1_MMR1 HSR1/MMR1. 94.1 0.064 1.4E-06 48.8 4.4 52 165-218 4-57 (141)
446 cd03261 ABC_Org_Solvent_Resist 94.1 0.045 9.8E-07 54.5 3.6 22 37-58 28-49 (235)
447 TIGR01166 cbiO cobalt transpor 94.0 0.046 1E-06 52.5 3.4 23 37-59 20-42 (190)
448 cd03264 ABC_drug_resistance_li 94.0 0.045 9.9E-07 53.5 3.4 29 36-66 26-54 (211)
449 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.0 0.044 9.6E-07 53.8 3.4 29 37-67 32-60 (218)
450 COG0410 LivF ABC-type branched 94.0 0.048 1E-06 53.1 3.4 22 37-58 31-52 (237)
451 PF13207 AAA_17: AAA domain; P 94.0 0.042 9.2E-07 48.3 2.8 22 37-58 1-22 (121)
452 PHA02518 ParA-like protein; Pr 93.9 0.47 1E-05 46.0 10.5 66 135-215 76-145 (211)
453 cd03222 ABC_RNaseL_inhibitor T 93.9 0.051 1.1E-06 51.7 3.4 24 36-59 26-49 (177)
454 cd02019 NK Nucleoside/nucleoti 93.9 0.052 1.1E-06 42.9 2.9 21 38-58 2-22 (69)
455 cd03265 ABC_DrrA DrrA is the A 93.9 0.05 1.1E-06 53.6 3.4 22 37-58 28-49 (220)
456 TIGR02857 CydD thiol reductant 93.9 0.24 5.1E-06 55.8 9.3 22 37-58 350-371 (529)
457 COG4559 ABC-type hemin transpo 93.9 0.055 1.2E-06 52.0 3.5 27 37-64 29-55 (259)
458 cd03224 ABC_TM1139_LivF_branch 93.9 0.054 1.2E-06 53.3 3.7 23 37-59 28-50 (222)
459 cd03218 ABC_YhbG The ABC trans 93.8 0.056 1.2E-06 53.7 3.7 23 37-59 28-50 (232)
460 cd03263 ABC_subfamily_A The AB 93.8 0.053 1.1E-06 53.3 3.5 22 37-58 30-51 (220)
461 cd03226 ABC_cobalt_CbiO_domain 93.8 0.056 1.2E-06 52.6 3.6 22 37-58 28-49 (205)
462 PRK13851 type IV secretion sys 93.8 0.049 1.1E-06 57.4 3.3 32 36-69 163-194 (344)
463 cd03215 ABC_Carb_Monos_II This 93.8 0.059 1.3E-06 51.4 3.7 23 37-59 28-50 (182)
464 PRK11176 lipid transporter ATP 93.8 0.23 4.9E-06 56.6 9.1 22 37-58 371-392 (582)
465 COG1132 MdlB ABC-type multidru 93.8 0.33 7.2E-06 55.1 10.4 22 37-58 357-378 (567)
466 cd03292 ABC_FtsE_transporter F 93.8 0.055 1.2E-06 52.9 3.6 22 37-58 29-50 (214)
467 TIGR02673 FtsE cell division A 93.8 0.054 1.2E-06 53.0 3.5 23 37-59 30-52 (214)
468 PF13191 AAA_16: AAA ATPase do 93.8 0.059 1.3E-06 51.0 3.7 25 34-58 23-47 (185)
469 PRK13541 cytochrome c biogenes 93.8 0.058 1.3E-06 52.1 3.6 23 37-59 28-50 (195)
470 KOG0066 eIF2-interacting prote 93.8 0.5 1.1E-05 50.1 10.5 29 36-65 614-642 (807)
471 TIGR00960 3a0501s02 Type II (G 93.8 0.054 1.2E-06 53.2 3.4 23 36-58 30-52 (216)
472 TIGR01193 bacteriocin_ABC ABC- 93.7 0.23 5E-06 58.0 9.2 22 37-58 502-523 (708)
473 cd03258 ABC_MetN_methionine_tr 93.7 0.059 1.3E-06 53.5 3.7 28 37-66 33-60 (233)
474 cd03269 ABC_putative_ATPase Th 93.7 0.059 1.3E-06 52.6 3.6 22 37-58 28-49 (210)
475 cd03259 ABC_Carb_Solutes_like 93.7 0.059 1.3E-06 52.7 3.6 22 37-58 28-49 (213)
476 PRK13651 cobalt transporter AT 93.7 0.056 1.2E-06 56.2 3.6 30 37-68 35-64 (305)
477 cd03229 ABC_Class3 This class 93.7 0.062 1.3E-06 51.0 3.6 22 37-58 28-49 (178)
478 COG0411 LivG ABC-type branched 93.7 0.019 4.1E-07 56.3 0.0 22 37-58 32-53 (250)
479 COG1120 FepC ABC-type cobalami 93.6 0.059 1.3E-06 54.0 3.5 28 37-66 30-57 (258)
480 PRK11629 lolD lipoprotein tran 93.6 0.057 1.2E-06 53.7 3.4 22 37-58 37-58 (233)
481 COG1129 MglA ABC-type sugar tr 93.6 0.37 8E-06 52.8 9.7 148 37-216 36-208 (500)
482 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.068 1.5E-06 49.6 3.6 31 36-68 26-56 (157)
483 cd03293 ABC_NrtD_SsuB_transpor 93.6 0.06 1.3E-06 53.0 3.4 23 37-59 32-54 (220)
484 cd03236 ABC_RNaseL_inhibitor_d 93.6 0.064 1.4E-06 54.2 3.7 32 36-69 27-58 (255)
485 TIGR02315 ABC_phnC phosphonate 93.6 0.059 1.3E-06 53.9 3.4 22 37-58 30-51 (243)
486 PRK10751 molybdopterin-guanine 93.6 0.051 1.1E-06 51.3 2.7 25 34-58 5-29 (173)
487 PRK13540 cytochrome c biogenes 93.6 0.066 1.4E-06 51.9 3.6 24 36-59 28-51 (200)
488 PRK10790 putative multidrug tr 93.5 0.27 5.8E-06 56.1 9.1 22 37-58 369-390 (592)
489 cd03254 ABCC_Glucan_exporter_l 93.5 0.067 1.4E-06 53.0 3.7 28 37-66 31-58 (229)
490 cd03216 ABC_Carb_Monos_I This 93.5 0.071 1.5E-06 49.9 3.7 24 36-59 27-50 (163)
491 cd03266 ABC_NatA_sodium_export 93.5 0.067 1.4E-06 52.5 3.6 22 37-58 33-54 (218)
492 cd03262 ABC_HisP_GlnQ_permease 93.5 0.069 1.5E-06 52.2 3.7 28 37-66 28-55 (213)
493 cd01983 Fer4_NifH The Fer4_Nif 93.5 0.55 1.2E-05 38.7 8.8 21 38-58 2-22 (99)
494 PRK15177 Vi polysaccharide exp 93.5 0.066 1.4E-06 52.5 3.5 30 37-68 15-44 (213)
495 TIGR03608 L_ocin_972_ABC putat 93.5 0.069 1.5E-06 51.9 3.6 22 37-58 26-47 (206)
496 PRK14738 gmk guanylate kinase; 93.5 0.071 1.5E-06 52.0 3.7 22 37-58 15-36 (206)
497 cd03231 ABC_CcmA_heme_exporter 93.5 0.072 1.6E-06 51.7 3.7 29 36-66 27-55 (201)
498 COG0488 Uup ATPase components 93.5 0.52 1.1E-05 52.6 10.8 35 36-72 30-64 (530)
499 cd01849 YlqF_related_GTPase Yl 93.5 0.12 2.7E-06 47.7 5.1 41 177-218 3-44 (155)
500 cd03219 ABC_Mj1267_LivG_branch 93.5 0.068 1.5E-06 53.2 3.6 28 37-66 28-55 (236)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=9.6e-98 Score=824.11 Aligned_cols=614 Identities=42% Similarity=0.596 Sum_probs=549.7
Q ss_pred CccchhHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeC
Q 006958 1 MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (624)
Q Consensus 1 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~ 80 (624)
|.+|+.++|++|++||.|..+|. +.++.+|+|+|||+||+||||++|+++|++|+|||.|+|||+|++++|.+.
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~------~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~ 74 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGS------SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIV 74 (657)
T ss_pred CchhhhccccchHHHHHHHHhcC------CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccc
Confidence 46799999999999999999993 234799999999999999999999999999999999999999999999998
Q ss_pred CCC-Ccceeec-cCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccH
Q 006958 81 EGG-TDYAEFL-HAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESI 158 (624)
Q Consensus 81 ~~~-~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~ 158 (624)
..+ .+|++|. |.++..++||++++++|+.+++++.|.++|+|+.+|.+.+++|+++++|+||+||++++++++||+++
T Consensus 75 ~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di 154 (657)
T KOG0446|consen 75 AGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDI 154 (657)
T ss_pred cCCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccH
Confidence 766 8999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCee
Q 006958 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWV 238 (624)
Q Consensus 159 ~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 238 (624)
..++++|+..|++.+++|||+|+++|+|+++++++++++++||.|.|||+|+||.|++++|++....+.|..+++++||+
T Consensus 155 ~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v 234 (657)
T KOG0446|consen 155 EEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYV 234 (657)
T ss_pred HHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCcccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006958 239 GIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELD 318 (624)
Q Consensus 239 ~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~ 318 (624)
+|+||++++++...+...+...|..||..++.|..+..++|+++|+..|...|..||++++|.+...|+..+.+.+.++.
T Consensus 235 ~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~ 314 (657)
T KOG0446|consen 235 GVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELN 314 (657)
T ss_pred eeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCC--C------CCCchhHhHhhhhhHHHhccCCcccCCchhhHHHHh
Q 006958 319 RIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGG--R------AGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVV 390 (624)
Q Consensus 319 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~--~------~~g~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i 390 (624)
++|. ..+.......++.++..|+..+...+.|. . .||+|++++|++.|...+.++++.+.+...+|++++
T Consensus 315 ~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i 392 (657)
T KOG0446|consen 315 RIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLV 392 (657)
T ss_pred Hhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHH
Confidence 9996 22223334467788888888888888886 2 588999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHH
Q 006958 391 SEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRD 470 (624)
Q Consensus 391 ~~~~G~~p~~f~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~ 470 (624)
+|++|++|++|.|+.+|+.++++||+.+++|+++||+.|++++.+++++++..+ +|.|||.|+.++..++.+.++++++
T Consensus 393 ~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~~~~~~~~~~~~ 471 (657)
T KOG0446|consen 393 SEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVEIASSLIAEGLD 471 (657)
T ss_pred HhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999998753 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCH---HHhhhhh---ccccc--------------cccCCC-------CCCCCCCCCCC-CCCC
Q 006958 471 ESRKTVLRLVDMESSYLTV---EFFRKLS---EQPER--------------SASDKN-------ASDKNAPDRNA-PPPG 522 (624)
Q Consensus 471 ~a~~~i~~li~~E~~yint---~~~~~~~---~~~~~--------------~~~~~~-------~~~~~~~~~~~-~~~~ 522 (624)
++++++.++++||.+|+|| +|++... +.... ...... ........... +++.
T Consensus 472 ~t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (657)
T KOG0446|consen 472 ETKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPSDIV 551 (657)
T ss_pred HHHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhcccchh
Confidence 9999999999999999987 4554321 11110 000000 00000000000 0000
Q ss_pred CC---CCCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHhhhhCCChHHH
Q 006958 523 PQ---NPERFSDYHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGR-QEERLGKMLDEDPQLM 598 (624)
Q Consensus 523 ~~---~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPkaI~~~lV~~~~~~L~~~L~~~L~~-~~~~~~~ll~E~~~i~ 598 (624)
.. ........+.+.|..++.+||+||+++++|+|||+|||+||+.+++.|+.+|+..||. . +.+++||+|+|.++
T Consensus 552 ~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~-~~~~~ll~E~~~i~ 630 (657)
T KOG0446|consen 552 LSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGD-EQLESLLKEDPRIK 630 (657)
T ss_pred hhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHccCHHHH
Confidence 00 0011122367889999999999999999999999999999999999999999999998 5 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Q 006958 599 DRRATLAKRLELYKSARDEIDAVAWK 624 (624)
Q Consensus 599 ~kR~~l~~~l~~L~~A~~~l~~~~~~ 624 (624)
.+|+.|++++++|++|+.++..+.|+
T Consensus 631 ~~R~~~~~~l~~L~~a~~ii~~~~~~ 656 (657)
T KOG0446|consen 631 RRRELQQKRLLALQKALSILATVAQA 656 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998874
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=2.4e-46 Score=368.71 Aligned_cols=239 Identities=62% Similarity=0.976 Sum_probs=224.3
Q ss_pred chhHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC
Q 006958 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG 83 (624)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~ 83 (624)
|+.|++++|+++++++.+|... .+++|+|+|||+||+||||+||+|+|..|+|++.|.|||||+++++++. .
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~------~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~--~ 72 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEK------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS--S 72 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCC------CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC--C
Confidence 7999999999999999999642 2699999999999999999999999999899999999999999999764 4
Q ss_pred CcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHH
Q 006958 84 TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE 163 (624)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~ 163 (624)
++|+++.+.+++.+.+++++.+.|+++++.+.|.+++||+++|.|+|++|++++++||||||+...+..++++++.+.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~ 152 (240)
T smart00053 73 TEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIK 152 (240)
T ss_pred CcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHH
Confidence 78999999999999999999999999999999989999999999999999999999999999988777777788889999
Q ss_pred HHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeC
Q 006958 164 NMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243 (624)
Q Consensus 164 ~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (624)
+++..|++++++|||+|++++.|+.+++++++++.+++.+.|||+|+||+|..++++++.++++|+.+++++||++|+||
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr 232 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNR 232 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECC
Confidence 99999999998899999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred Chhhhcc
Q 006958 244 SQADINK 250 (624)
Q Consensus 244 s~~~~~~ 250 (624)
|+++++.
T Consensus 233 ~~~d~~~ 239 (240)
T smart00053 233 SQKDIEG 239 (240)
T ss_pred ChHHhhc
Confidence 9998753
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=8.4e-46 Score=382.00 Aligned_cols=270 Identities=31% Similarity=0.536 Sum_probs=242.5
Q ss_pred HHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHH
Q 006958 223 LEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302 (624)
Q Consensus 223 ~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l 302 (624)
.++++|+.++|++||++|+|||++|++...+..+++..|.+||.++++|+...+++|+++|+.+|+++|.+||+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 68899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCC---------CCchhHhHhhhhhHHHhc
Q 006958 303 IALINKNIDEINAELDRIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGGRA---------GGDRIYGVFDHQLPAALK 373 (624)
Q Consensus 303 ~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~---------~g~ri~~~f~~~f~~~~~ 373 (624)
+.+|+..+.+++.+|..||++++.+.+++..+|++++++|++.+.++++|.|. ||+||.++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999998677788889999999999999999999986 579999999999999999
Q ss_pred cCCcccCCchhhHHHHhHhccCCCCCCCCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhH
Q 006958 374 KLPFDRHLSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTL 453 (624)
Q Consensus 374 ~~~~~~~~~~~~i~~~i~~~~G~~p~~f~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L 453 (624)
+.++...+++++|+++|++++|+++++|+|+.+|+.||+++|+.|++||.+|++.|++++.+++.+++. .+|.+||+|
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L 239 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNL 239 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHH
Confidence 988888889999999999999999999999999999999999999999999999999999999999876 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCH---HHhhh
Q 006958 454 QSDIAAAATEALEKFRDESRKTVLRLVDMESSYLTV---EFFRK 494 (624)
Q Consensus 454 ~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~yint---~~~~~ 494 (624)
++++.+++.++++++.++|+++|.++|+||++|+|| +|.+.
T Consensus 240 ~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~ 283 (295)
T PF01031_consen 240 KEAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGE 283 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999988 45554
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.98 E-value=9.8e-30 Score=262.14 Aligned_cols=293 Identities=28% Similarity=0.445 Sum_probs=229.6
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCC
Q 006958 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGT 84 (624)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~ 84 (624)
+||.+....-|+++.-... . +..-.||+|||||+|||||||+|+.|....+||||+| +.||.|..+.|.-. +-
T Consensus 283 SLIDMYSEVLD~Ls~YD~s---Y-nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEG--Py 356 (980)
T KOG0447|consen 283 SLIDMYSEVLDVLSDYDAS---Y-NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEG--PH 356 (980)
T ss_pred HHHHHHHHHHHHHhccccc---c-cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccC--cc
Confidence 4666666655555444321 1 1224799999999999999999999999999999999 79999998887433 22
Q ss_pred cceeeccCCC----CccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHH
Q 006958 85 DYAEFLHAPR----KKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (624)
Q Consensus 85 ~~~~~~~~~~----~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~ 160 (624)
-.+.|..... .+-+|+.+++.+++-.+......++.+|+..|.+.+.||+.+.+++||+||+++.-+.+...+..+
T Consensus 357 HVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd 436 (980)
T KOG0447|consen 357 HVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKE 436 (980)
T ss_pred hhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchH
Confidence 2233332222 133588889998887766666668899999999999999999999999999999888888888899
Q ss_pred HHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc----ccHHHHHhCcccccC-C
Q 006958 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG----TNALEVLEGRSYRLQ-H 235 (624)
Q Consensus 161 ~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~----~~~~~~l~~~~~~l~-~ 235 (624)
.|-.|.+.|+++|++||||+.+.+.|...+-.-.++-++||.|.|||+|+||+|+..+. ..+.+++.|+.+|.+ +
T Consensus 437 ~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKAL 516 (980)
T KOG0447|consen 437 TIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKAL 516 (980)
T ss_pred HHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhc
Confidence 99999999999999999999999999888888889999999999999999999998663 236789999988876 7
Q ss_pred CeeEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCCcc---ccccChHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006958 236 PWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHL---ASKMGSEYLAKLLSQHLERVIRQRIPSIIALIN 307 (624)
Q Consensus 236 g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~---~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~ 307 (624)
||++|+.-.+. ..-++..-+.-|++||.++..+..- +....+.+|.-.++.-++..+++++-.......
T Consensus 517 GYfaVVTGrGn---ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFk 588 (980)
T KOG0447|consen 517 GYFAVVTGKGN---SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFK 588 (980)
T ss_pred ceeEEEecCCC---cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999864332 1223444456688899986554331 367788899999999999998888765555443
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.91 E-value=2.5e-24 Score=180.78 Aligned_cols=89 Identities=40% Similarity=0.597 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhCCChHHHHHHHHHHHHHHHH
Q 006958 532 YHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEERLGKMLDEDPQLMDRRATLAKRLELY 611 (624)
Q Consensus 532 ~~~~~i~~~v~aYf~iv~k~i~D~VPkaI~~~lV~~~~~~L~~~L~~~L~~~~~~~~~ll~E~~~i~~kR~~l~~~l~~L 611 (624)
.++++|+.++.|||+||+|+++|+|||+||||||+.+++.||.+|++.||+. +.+++||+|||+|++||+.|++++++|
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~-~~~~~LL~E~~~i~~kR~~~~~~l~~L 82 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKE-ELLDELLEEDPEIASKRKELKKRLELL 82 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCc-ccHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999985 789999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 006958 612 KSARDEIDAV 621 (624)
Q Consensus 612 ~~A~~~l~~~ 621 (624)
++|+++|++|
T Consensus 83 ~~A~~~l~~v 92 (92)
T smart00302 83 KKARQIIAAV 92 (92)
T ss_pred HHHHHHHhcC
Confidence 9999999876
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=9.2e-24 Score=208.25 Aligned_cols=235 Identities=22% Similarity=0.343 Sum_probs=174.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|++||.||+|||||+|+|+|.++ +++|+.| + +| +.+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~---Q--TT------------------------------R~~ 44 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKP---Q--TT------------------------------RNR 44 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCc---c--hh------------------------------hhh
Confidence 566899999999999999999999999 9999999 3 22 456
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+.| |...+..+++||||||+...... +.+.+...+.+.+.++|. ||+|++++..+...+..
T Consensus 45 I~G-------------I~t~~~~QiIfvDTPGih~pk~~-----l~~~m~~~a~~sl~dvDl-ilfvvd~~~~~~~~d~~ 105 (298)
T COG1159 45 IRG-------------IVTTDNAQIIFVDTPGIHKPKHA-----LGELMNKAARSALKDVDL-ILFVVDADEGWGPGDEF 105 (298)
T ss_pred eeE-------------EEEcCCceEEEEeCCCCCCcchH-----HHHHHHHHHHHHhccCcE-EEEEEeccccCCccHHH
Confidence 667 77777899999999999987544 778888889999999995 55677887767666554
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChh---hhccCCcHHHHHHHHHhHhccCCC
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA---DINKNVDMIAARRKEREYFETSPE 270 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~---~~~~~~~~~~~~~~e~~~f~~~~~ 270 (624)
++..+.....|.|+++||+|...+...+..+.. ......+|..+++.|+. +++.+...+...+.|.+||++...
T Consensus 106 -il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 106 -ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred -HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 555555556899999999999987654444443 34445677778877774 444555556666667677666655
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHH
Q 006958 271 YGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLY 333 (624)
Q Consensus 271 ~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~ 333 (624)
+++.+++ .-.++.++|.++...+++||+......+++...+..+-.+...+.+++++|..
T Consensus 183 itD~~~r---f~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK~ 242 (298)
T COG1159 183 ITDRPER---FLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQKG 242 (298)
T ss_pred ccCChHH---HHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCccc
Confidence 5554444 44569999999999999999988776665555455666666666666655543
No 7
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.88 E-value=8e-22 Score=186.56 Aligned_cols=166 Identities=36% Similarity=0.504 Sum_probs=133.5
Q ss_pred EEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCC--cceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT--DYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
|+|+|.+|||||||+|+|+|.+++|.+.+.||++|+.++....+... .+..........+.++.++.+.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 79999999999999999999999999999999999999976654432 1111222235667889999999988877777
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
+....++...+.+....+...+++||||||+......+ .+++.+|+.++|+ +++|.+++.++...+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d~-vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKADV-VIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTEE-EEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCCE-EEEEeccCcccchHHHHHH
Confidence 66778888899999999999999999999998744332 3889999988885 5567788888888888889
Q ss_pred HHHhCCCCCceEEEeccC
Q 006958 196 AREVDPTGERTFGVLTKL 213 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~ 213 (624)
.+..++...++++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 8
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.87 E-value=5.5e-22 Score=167.22 Aligned_cols=89 Identities=26% Similarity=0.433 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhCCChHHHHHHHHHHHHHHHH
Q 006958 532 YHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEERLGKMLDEDPQLMDRRATLAKRLELY 611 (624)
Q Consensus 532 ~~~~~i~~~v~aYf~iv~k~i~D~VPkaI~~~lV~~~~~~L~~~L~~~L~~~~~~~~~ll~E~~~i~~kR~~l~~~l~~L 611 (624)
.++++|+++++|||+||+|||+|+|||+|+||||+++.+.|+.+|+..|+.. +.+++||+|||+|+++|+.|++++++|
T Consensus 4 ~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~-~~~~~Ll~Ed~~i~~kR~~l~~~~~~L 82 (92)
T PF02212_consen 4 REVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDE-EDLEELLQEDPEIAEKREELKKKLERL 82 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGCCCCT--GHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccch-HHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999985 569999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 006958 612 KSARDEIDAV 621 (624)
Q Consensus 612 ~~A~~~l~~~ 621 (624)
++|+++|++|
T Consensus 83 ~~A~~~L~~~ 92 (92)
T PF02212_consen 83 KKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHcC
Confidence 9999999876
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.80 E-value=1.6e-19 Score=184.27 Aligned_cols=211 Identities=16% Similarity=0.198 Sum_probs=134.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|.+|||||||+|+|+|.++ .+++..|-..+ ....|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-----~~vs~~~~TTr-----------------------------------~~i~~ 41 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-----SITSPKAQTTR-----------------------------------NRISG 41 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-----eecCCCCCccc-----------------------------------CcEEE
Confidence 699999999999999999999986 44555551111 00111
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
+...+..++.||||||+..... ...+.+...+..+++++|.+++++ +++...... ..+.
T Consensus 42 -------------i~~~~~~qii~vDTPG~~~~~~-----~l~~~~~~~~~~~l~~aDvvl~Vv-D~~~~~~~~--~~i~ 100 (270)
T TIGR00436 42 -------------IHTTGASQIIFIDTPGFHEKKH-----SLNRLMMKEARSAIGGVDLILFVV-DSDQWNGDG--EFVL 100 (270)
T ss_pred -------------EEEcCCcEEEEEECcCCCCCcc-----hHHHHHHHHHHHHHhhCCEEEEEE-ECCCCCchH--HHHH
Confidence 2223345799999999876422 244555666778899999776655 554332222 2234
Q ss_pred HHhCCCCCceEEEeccCcccCccccHHHHHhCcccccC-CCeeEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCCccc
Q 006958 197 REVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQ-HPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLA 275 (624)
Q Consensus 197 ~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~ 275 (624)
..+...+.|+++|+||+|+..+.. ..+.+........ ..++.+++.++.+++++.+.+.....+.+++++....++.+
T Consensus 101 ~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~ 179 (270)
T TIGR00436 101 TKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQP 179 (270)
T ss_pred HHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCC
Confidence 444456789999999999975432 2222111000111 15677777777777777766666665555555444444433
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006958 276 SKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDE 312 (624)
Q Consensus 276 ~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~ 312 (624)
.+ ...++.+++.++.++++++|+......+.+..
T Consensus 180 ~~---~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~ 213 (270)
T TIGR00436 180 DR---FKISEIIREKIIRYTKEEIPHSVRVEIERKSF 213 (270)
T ss_pred HH---HHHHHHHHHHHHHhcccccCceEEEEEEEEEE
Confidence 32 45669999999999999999988776665544
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.77 E-value=1.9e-18 Score=178.59 Aligned_cols=216 Identities=21% Similarity=0.334 Sum_probs=132.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+...|+|+|.+|||||||+|+|+|.++ .+++..|...+ ..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~~tt~-----------------------------------~~ 43 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKPQTTR-----------------------------------HR 43 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce-----eecCCCCCccc-----------------------------------cc
Confidence 456899999999999999999999987 45555551111 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
..| +...+..+++||||||+...... +.+.+...+..++.++|++++++ +++..+...+ .
T Consensus 44 i~~-------------i~~~~~~qi~~iDTPG~~~~~~~-----l~~~~~~~~~~~~~~~D~il~vv-d~~~~~~~~~-~ 103 (292)
T PRK00089 44 IRG-------------IVTEDDAQIIFVDTPGIHKPKRA-----LNRAMNKAAWSSLKDVDLVLFVV-DADEKIGPGD-E 103 (292)
T ss_pred EEE-------------EEEcCCceEEEEECCCCCCchhH-----HHHHHHHHHHHHHhcCCEEEEEE-eCCCCCChhH-H
Confidence 111 33333468999999998764322 45556667778889999876655 5554333332 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCccccc-CCCeeEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCC
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRL-QHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYG 272 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~ 272 (624)
.+++.+...+.|+++|+||+|+..........+..-.... ...++.+++.++.++.++.+.+.....+.++++.....+
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~t 183 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQIT 183 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3455555557899999999999843322222222100111 123445555555555555555554444444444333333
Q ss_pred ccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006958 273 HLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDE 312 (624)
Q Consensus 273 ~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~ 312 (624)
+.+.+ ....+.+++.++.++++++|+..+...+.+.+
T Consensus 184 d~~~r---~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~ 220 (292)
T PRK00089 184 DRPER---FLAAEIIREKLLRLLGDELPYSVAVEIEKFEE 220 (292)
T ss_pred CCCHH---HHHHHHHHHHHHhhCCccCCceEEEEEEEEEE
Confidence 32222 45568999999999999999987766555543
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=7e-18 Score=177.04 Aligned_cols=232 Identities=18% Similarity=0.248 Sum_probs=147.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|++||.+|||||||+|+|+|..+ .+++..|...+ +...
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~~tTr-----------------------------------~~~~ 92 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKVQTTR-----------------------------------SIIT 92 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce-----eeccCCCCCcc-----------------------------------CcEE
Confidence 3899999999999999999999886 44444440000 0001
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
| +...+..++.||||||+..... .+...+...+..++..+|++++++ ++...+...+. .+
T Consensus 93 ~-------------~~~~~~~qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aDvil~Vv-D~~~s~~~~~~-~i 152 (339)
T PRK15494 93 G-------------IITLKDTQVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSADLVLLII-DSLKSFDDITH-NI 152 (339)
T ss_pred E-------------EEEeCCeEEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCCEEEEEE-ECCCCCCHHHH-HH
Confidence 1 1122335789999999864322 144445555666788999877755 44443433322 24
Q ss_pred HHHhCCCCCceEEEeccCcccCccc-cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCCcc
Q 006958 196 AREVDPTGERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHL 274 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~ 274 (624)
+..+...+.+.|+|+||+|+.+... +..+.+.. ......++.+++.++.+++++++.+...+.|.+|++....+++.
T Consensus 153 l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 153 LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDL 230 (339)
T ss_pred HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4444445678899999999865421 12222221 11113467778888888888888888888888888877766664
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHH
Q 006958 275 ASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQL 332 (624)
Q Consensus 275 ~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~ 332 (624)
+.+ ....+.+++.++.++.+++||..+...+.+.+.+...-.+...+.+++++|.
T Consensus 231 ~~~---~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk 285 (339)
T PRK15494 231 PMR---FIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYK 285 (339)
T ss_pred CHH---HHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCce
Confidence 443 4557999999999999999999887766665433222233344444444443
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=6.6e-17 Score=168.48 Aligned_cols=157 Identities=25% Similarity=0.350 Sum_probs=111.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
|.|++||.||+|||||+|+|+|.+. ++|...|-+.+ ++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGvTR-----------------------------------Dr~y 43 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGVTR-----------------------------------DRIY 43 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCCcc-----------------------------------CCcc
Confidence 8999999999999999999999987 77777773332 3333
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
+. .++. ...+.+|||+|+.... ++.+.+.+...+...+..+|+||+ |+++..+++..|.. +
T Consensus 44 ~~----------~~~~---~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilf-vVD~~~Git~~D~~-i 104 (444)
T COG1160 44 GD----------AEWL---GREFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILF-VVDGREGITPADEE-I 104 (444)
T ss_pred ce----------eEEc---CceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEE-EEeCCCCCCHHHHH-H
Confidence 31 1122 2459999999998643 234889999999999999997555 66788777777665 7
Q ss_pred HHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCCh---hhhccCCcHHHHH
Q 006958 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQ---ADINKNVDMIAAR 258 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~~ 258 (624)
++.+.+.++|+|+|+||+|..+......++ +. +|+-...+.|+ .++.++.+.+.+.
T Consensus 105 a~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----ys--lG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 105 AKILRRSKKPVILVVNKIDNLKAEELAYEF-----YS--LGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred HHHHHhcCCCEEEEEEcccCchhhhhHHHH-----Hh--cCCCCceEeehhhccCHHHHHHHHHhh
Confidence 787777789999999999987543333333 34 44444444454 5555555544443
No 13
>PRK09866 hypothetical protein; Provisional
Probab=99.69 E-value=1.7e-12 Score=140.86 Aligned_cols=173 Identities=21% Similarity=0.326 Sum_probs=99.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceee------cc-----CC-------C---
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEF------LH-----AP-------R--- 94 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~------~~-----~~-------~--- 94 (624)
|.++|+|..|+|||||+|+|+|..++|.+...+|.+|+.++. +++.....-+ +. -| .
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~--~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl 147 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRH--TPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHL 147 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEe--cCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHH
Confidence 899999999999999999999999999999999999987663 3322221111 00 00 0
Q ss_pred ----CccCChHHHHHHHHHHH----------------------hhhh---CCCCCcc------c-ccEEEEEecCC----
Q 006958 95 ----KKFTDFAAVRKEISDET----------------------DRIT---GKSKQIS------N-IPIQLSIYSPN---- 134 (624)
Q Consensus 95 ----~~~~~~~~v~~~i~~~~----------------------~~~~---g~~~~~s------~-~~i~l~i~~~~---- 134 (624)
....|..++...|++.. .++. +..-.|. . ..|.++.....
T Consensus 148 ~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~ 227 (741)
T PRK09866 148 TDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLES 227 (741)
T ss_pred HHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccc
Confidence 00012222221111110 0000 0000010 0 12334333333
Q ss_pred -CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCC--CceEEEec
Q 006958 135 -VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTG--ERTFGVLT 211 (624)
Q Consensus 135 -~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~--~rti~Vlt 211 (624)
..+++||||||+...... .+..+..+.+.++|.| |+|++++......+. .+++.+...+ .|+++|+|
T Consensus 228 ~~~QIIFVDTPGIhk~~~~--------~L~k~M~eqL~eADvV-LFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVN 297 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQP--------HLQKMLNQQLARASAV-LAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVN 297 (741)
T ss_pred ccCCEEEEECCCCCCccch--------HHHHHHHHHHhhCCEE-EEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEE
Confidence 369999999999854221 1233334579999965 556677654444443 2555555555 49999999
Q ss_pred cCcccCccc
Q 006958 212 KLDLMDKGT 220 (624)
Q Consensus 212 K~D~~~~~~ 220 (624)
|+|+.++..
T Consensus 298 KIDl~dree 306 (741)
T PRK09866 298 KFDQQDRNS 306 (741)
T ss_pred cccCCCccc
Confidence 999976443
No 14
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.68 E-value=1e-16 Score=147.55 Aligned_cols=146 Identities=27% Similarity=0.413 Sum_probs=90.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
+|+++|.||+|||||+|+|+|.+. .++..| |
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~------~v~n~p-------------------------------------------G 32 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ------KVGNWP-------------------------------------------G 32 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE------EEEEST-------------------------------------------T
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------eecCCC-------------------------------------------C
Confidence 699999999999999999999984 122233 1
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
.+-+...- ....+...+.||||||+++..... .+ +.++.+|+ .++|.+|+++ +++. .++.+.
T Consensus 33 ----~Tv~~~~g-~~~~~~~~~~lvDlPG~ysl~~~s-----~e--e~v~~~~l~~~~~D~ii~Vv-Da~~---l~r~l~ 96 (156)
T PF02421_consen 33 ----TTVEKKEG-IFKLGDQQVELVDLPGIYSLSSKS-----EE--ERVARDYLLSEKPDLIIVVV-DATN---LERNLY 96 (156)
T ss_dssp ----SSSEEEEE-EEEETTEEEEEEE----SSSSSSS-----HH--HHHHHHHHHHTSSSEEEEEE-EGGG---HHHHHH
T ss_pred ----CCeeeeeE-EEEecCceEEEEECCCcccCCCCC-----cH--HHHHHHHHhhcCCCEEEEEC-CCCC---HHHHHH
Confidence 11111111 111123679999999998864431 12 45566676 5899766654 5543 355566
Q ss_pred HHHHhCCCCCceEEEeccCcccCccccH--HHHHhCcccccCCCeeEEEeCChhhhcc
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKGTNA--LEVLEGRSYRLQHPWVGIVNRSQADINK 250 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (624)
++.++...|.|+++|+||+|...+.... .+.+. ..++.+.+.++.++.+++++
T Consensus 97 l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls---~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 97 LTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLS---ERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp HHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHH---HHHTS-EEEEBTTTTBTHHH
T ss_pred HHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHH---HHhCCCEEEEEeCCCcCHHH
Confidence 8888888899999999999998765421 22222 23456667777777766544
No 15
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=3.7e-15 Score=155.91 Aligned_cols=181 Identities=20% Similarity=0.203 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCC
Q 006958 5 TSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT 84 (624)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~ 84 (624)
+.|-.+...|-++.+...... .+ -+--.||++|.||+|||||||+|+|.+. .+||..|-..
T Consensus 192 ~~l~~~~~~l~~ll~~~~~g~-il----r~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~GTT--------- 252 (454)
T COG0486 192 EKLEELIAELDELLATAKQGK-IL----REGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIAGTT--------- 252 (454)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-hh----hcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCCCCc---------
Confidence 344444555555554443211 11 2445899999999999999999999998 8999988222
Q ss_pred cceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHH
Q 006958 85 DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN 164 (624)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~ 164 (624)
.+.|.-.+.- +..++.++||.|+...... +++.--+
T Consensus 253 --------------------------------------RDviee~i~i-~G~pv~l~DTAGiRet~d~-----VE~iGIe 288 (454)
T COG0486 253 --------------------------------------RDVIEEDINL-NGIPVRLVDTAGIRETDDV-----VERIGIE 288 (454)
T ss_pred --------------------------------------cceEEEEEEE-CCEEEEEEecCCcccCccH-----HHHHHHH
Confidence 1222222221 2478999999999854332 4444456
Q ss_pred HHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCC
Q 006958 165 MVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (624)
Q Consensus 165 ~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (624)
-.+..++++|. ||+|.+++..+...+.. +.. .-+.++|+++|+||.|+..+..... + ....+..+..++..+
T Consensus 289 Rs~~~i~~ADl-vL~v~D~~~~~~~~d~~-~~~-~~~~~~~~i~v~NK~DL~~~~~~~~-~----~~~~~~~~i~iSa~t 360 (454)
T COG0486 289 RAKKAIEEADL-VLFVLDASQPLDKEDLA-LIE-LLPKKKPIIVVLNKADLVSKIELES-E----KLANGDAIISISAKT 360 (454)
T ss_pred HHHHHHHhCCE-EEEEEeCCCCCchhhHH-HHH-hcccCCCEEEEEechhcccccccch-h----hccCCCceEEEEecC
Confidence 67888999995 55677777654444433 333 4566899999999999987643110 0 123334567788888
Q ss_pred hhhhccCCcHHH
Q 006958 245 QADINKNVDMIA 256 (624)
Q Consensus 245 ~~~~~~~~~~~~ 256 (624)
+.+++.+.+.+.
T Consensus 361 ~~Gl~~L~~~i~ 372 (454)
T COG0486 361 GEGLDALREAIK 372 (454)
T ss_pred ccCHHHHHHHHH
Confidence 777655444333
No 16
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.66 E-value=2.8e-16 Score=154.06 Aligned_cols=214 Identities=15% Similarity=0.251 Sum_probs=134.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..-+|+|+|.||+|||||.|.++|.++ .++||++-.. +.+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv-----~~vS~K~~TT-----------------------------------r~~ 110 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKV-----SAVSRKVHTT-----------------------------------RHR 110 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcc-----ccccccccce-----------------------------------eee
Confidence 556999999999999999999999999 5666666111 223
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~~~~ 192 (624)
+.| |.+.+..++.|+||||++.....-+.. +...+..-.+..++++|+++++++.++. ....-..
T Consensus 111 ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~~~-l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~v 176 (379)
T KOG1423|consen 111 ILG-------------IITSGETQLVFYDTPGLVSKKMHRRHH-LMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRV 176 (379)
T ss_pred eeE-------------EEecCceEEEEecCCcccccchhhhHH-HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHH
Confidence 444 677778999999999999765432111 1222233456678899987766655432 2233345
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccH---HHHHhCcc--------------------cccCCCe------eEEEeC
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNA---LEVLEGRS--------------------YRLQHPW------VGIVNR 243 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~---~~~l~~~~--------------------~~l~~g~------~~v~~~ 243 (624)
+..++.+. ..|.|+|+||+|...+...+ .+.+.+.. .+-..|| |.|+..
T Consensus 177 l~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL 254 (379)
T KOG1423|consen 177 LHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSAL 254 (379)
T ss_pred HHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecc
Confidence 55666664 47899999999998765432 22222111 1112345 445555
Q ss_pred ChhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006958 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALI 306 (624)
Q Consensus 244 s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i 306 (624)
++.|++++.+++...+...+|.+..... .+........+.+++.|.+|+.+++||-.+.-
T Consensus 255 ~G~GikdlkqyLmsqa~~gpW~y~a~i~---T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~ 314 (379)
T KOG1423|consen 255 YGEGIKDLKQYLMSQAPPGPWKYPADIV---TEESPEFLCSESVREKLLDHLPQEVPYNLQVR 314 (379)
T ss_pred cccCHHHHHHHHHhcCCCCCCCCCcccc---cccCHHHHHHHHHHHHHHhhCccccCcceEEE
Confidence 6677766666555554443343322211 12333345569999999999999999876543
No 17
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=8e-15 Score=155.95 Aligned_cols=178 Identities=19% Similarity=0.185 Sum_probs=103.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+..|++||.||||||||||+|++.+.-......+|+.|+.-.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi-------------------------------------- 200 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV-------------------------------------- 200 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE--------------------------------------
Confidence 458999999999999999999998632222234555553222
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC---CccccHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN---QDIATSD 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~---~d~~~~~ 191 (624)
+...+...++|+||||+...+..+ ..+.....+++++++++++++.... .+.. .+
T Consensus 201 ---------------v~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~-e~ 258 (390)
T PRK12298 201 ---------------VRVDDERSFVVADIPGLIEGASEG------AGLGIRFLKHLERCRVLLHLIDIAPIDGSDPV-EN 258 (390)
T ss_pred ---------------EEeCCCcEEEEEeCCCccccccch------hhHHHHHHHHHHhCCEEEEEeccCcccccChH-HH
Confidence 112223459999999998755431 1112222357889997776554331 1111 11
Q ss_pred HHHHHHHhCC-----CCCceEEEeccCcccCccccHHHHHhCc--ccccCCCeeEEEeCChhhhccCCcHHHHHHHHHhH
Q 006958 192 AIKLAREVDP-----TGERTFGVLTKLDLMDKGTNALEVLEGR--SYRLQHPWVGIVNRSQADINKNVDMIAARRKEREY 264 (624)
Q Consensus 192 ~~~l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~ 264 (624)
...+.+++.. .+.|.|+|+||+|+.... ...+.+... .......++.+++.+..++.+++..+.....+.++
T Consensus 259 ~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 259 ARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred HHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcc
Confidence 1223333322 358999999999997543 222222210 11111245677777777777777777666666565
Q ss_pred hccCCCCCc
Q 006958 265 FETSPEYGH 273 (624)
Q Consensus 265 f~~~~~~~~ 273 (624)
++....+++
T Consensus 338 ~~~~~~~td 346 (390)
T PRK12298 338 EEAEEAEAP 346 (390)
T ss_pred cCCcccccC
Confidence 554444444
No 18
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=8.2e-15 Score=146.18 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=109.4
Q ss_pred chhHHHHHHHHHHHHHHhccC---CCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeC
Q 006958 4 MTSLIGLINKIQRACTVLGDH---GGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (624)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~---~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~ 80 (624)
-..+.++++++.+-+.-++.. -.++|+...++|+|+|.|.||+|||||+++|++.+. -+..+
T Consensus 134 ~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------EvA~Y--------- 198 (346)
T COG1084 134 FGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------EVAPY--------- 198 (346)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC------ccCCC---------
Confidence 355677777777776666542 227888888999999999999999999999999874 11122
Q ss_pred CCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHH
Q 006958 81 EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (624)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~ 160 (624)
.|+.+.|.+.....+...+.+|||||+-+-+.. -..
T Consensus 199 ---------------------------------------PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~-----ErN 234 (346)
T COG1084 199 ---------------------------------------PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE-----ERN 234 (346)
T ss_pred ---------------------------------------CccccceeEeeeecCCceEEEecCCcccCCChH-----Hhc
Confidence 255555666666666778999999999876543 233
Q ss_pred HHHHHHHHhhcCCCEEEEEEecCCC--ccccHHHHHHHHHhCCC-CCceEEEeccCcccCcc
Q 006958 161 DIENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPT-GERTFGVLTKLDLMDKG 219 (624)
Q Consensus 161 ~i~~~~~~yi~~~~~iiL~V~~a~~--d~~~~~~~~l~~~~d~~-~~rti~VltK~D~~~~~ 219 (624)
.|+..+-..+++-+.+||++.+.+. .+..++-..|.+++.+. ..|++.|+||+|..+.+
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 4555555556665556666666554 34444445566666554 35899999999998654
No 19
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.58 E-value=5.3e-14 Score=147.99 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=96.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..|+|++||.+|||||||+|+|+|.++...+...+|+-|+.-.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------- 230 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------- 230 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE-------------------------------------
Confidence 5799999999999999999999998754444334454442221
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
+.-++..++.||||||+.+. -|.+..+.++.. ..++.++|++++++ +++......
T Consensus 231 ----------------i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~t-le~~~~ADlil~Vv-D~s~~~~~~~~~ 288 (351)
T TIGR03156 231 ----------------LDLPDGGEVLLTDTVGFIRD----LPHELVAAFRAT-LEEVREADLLLHVV-DASDPDREEQIE 288 (351)
T ss_pred ----------------EEeCCCceEEEEecCccccc----CCHHHHHHHHHH-HHHHHhCCEEEEEE-ECCCCchHHHHH
Confidence 22333457999999998653 233455656554 45788999776655 444322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCC
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (624)
.+..+++.+...+.|+++|+||+|+.+.. .... ... ....++.+++.++.+++++.
T Consensus 289 ~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-~v~~-~~~----~~~~~i~iSAktg~GI~eL~ 344 (351)
T TIGR03156 289 AVEKVLEELGAEDIPQLLVYNKIDLLDEP-RIER-LEE----GYPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred HHHHHHHHhccCCCCEEEEEEeecCCChH-hHHH-HHh----CCCCEEEEEccCCCCHHHHH
Confidence 22345666655578999999999997542 1111 111 01235666666666654433
No 20
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3e-14 Score=148.61 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=96.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-++.|++||.||||||||||+|++.+.-..+...+|+.|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 3678999999999999999999987532112234566652222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~-~~ 191 (624)
+...+...++++||||++..+..+ ..+.....++++++++++++++..+.+ +.. ..
T Consensus 200 ----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~ 257 (335)
T PRK12299 200 ----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKT 257 (335)
T ss_pred ----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHH
Confidence 112234569999999998755431 123344566788899777655433322 111 12
Q ss_pred HHHHHHHhCC--CCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHH
Q 006958 192 AIKLAREVDP--TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 192 ~~~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
+...+..+++ ...|.++|+||+|+.+......+............++.+++.+..++++++..+...
T Consensus 258 ~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 258 IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 2223333443 368999999999997643211111111011122456666776666666555544433
No 21
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=7.3e-14 Score=131.33 Aligned_cols=128 Identities=27% Similarity=0.405 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++|.|+++|..|+||||+||+|+|..-|-| ++..|-..++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LAr----tSktPGrTq~------------------------------------ 62 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLAR----TSKTPGRTQL------------------------------------ 62 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceee----cCCCCCccce------------------------------------
Confidence 799999999999999999999999763322 2233311111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEE--EEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCII--LAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~ii--L~V~~a~~d~~~~~ 191 (624)
+- .+..+ ..+.|||+||+.-... |++..+.+..++..|++.-..+. ++++++.......|
T Consensus 63 -----------iN---ff~~~-~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D 124 (200)
T COG0218 63 -----------IN---FFEVD-DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD 124 (200)
T ss_pred -----------eE---EEEec-CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH
Confidence 11 11111 2389999999875443 34678899999999997532233 22567776665555
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (624)
. ++...+...+.++++|+||+|.+..+.
T Consensus 125 ~-em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 125 R-EMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred H-HHHHHHHHcCCCeEEEEEccccCChhH
Confidence 4 477777778999999999999998754
No 22
>PRK11058 GTPase HflX; Provisional
Probab=99.54 E-value=1.2e-13 Score=148.51 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=94.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.+|.|++||.+|||||||+|+|+|.++...+.-.+|+-|+.-.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------- 238 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------- 238 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE-------------------------------------
Confidence 5799999999999999999999998763222223344332111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--D 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--~ 191 (624)
+..++...+.|+||||+++. .|.+..+.+... ..++.++|.++++++..+...... .
T Consensus 239 ----------------i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~ 297 (426)
T PRK11058 239 ----------------IDVADVGETVLADTVGFIRH----LPHDLVAAFKAT-LQETRQATLLLHVVDAADVRVQENIEA 297 (426)
T ss_pred ----------------EEeCCCCeEEEEecCccccc----CCHHHHHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHH
Confidence 22223336789999998653 233455555553 567789998766554433222111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCC-eeEEEeCChhhhccCCcHHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~ 256 (624)
+..++.++...+.|+++|+||+|+.+......+.. ..+.+ ++.+++.++.+++.+++.+.
T Consensus 298 v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~-----~~~~~~~v~ISAktG~GIdeL~e~I~ 358 (426)
T PRK11058 298 VNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRD-----EENKPIRVWLSAQTGAGIPLLFQALT 358 (426)
T ss_pred HHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHH-----hcCCCceEEEeCCCCCCHHHHHHHHH
Confidence 23456666666789999999999975321111111 11222 24566666666555444443
No 23
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.52 E-value=8.5e-13 Score=143.72 Aligned_cols=177 Identities=23% Similarity=0.253 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcc
Q 006958 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDY 86 (624)
Q Consensus 7 l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~ 86 (624)
+..+.++|.++....... ..+ -+-+.|+++|.+|||||||+|+|+|.++ .+++..|...
T Consensus 192 i~~l~~~l~~l~~~~~~~-~~~----~~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~gtT----------- 250 (449)
T PRK05291 192 LEELIAELEALLASARQG-EIL----REGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIAGTT----------- 250 (449)
T ss_pred HHHHHHHHHHHHHHHHHH-HHh----hcCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCcc-----------
Confidence 444555555554444321 111 1347899999999999999999999875 3333333100
Q ss_pred eeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHH-HHH
Q 006958 87 AEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI-ENM 165 (624)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i-~~~ 165 (624)
.+.+...+.. +..++++|||||+... .+..+.. -..
T Consensus 251 ------------------------------------~d~~~~~i~~-~g~~i~l~DT~G~~~~------~~~ie~~gi~~ 287 (449)
T PRK05291 251 ------------------------------------RDVIEEHINL-DGIPLRLIDTAGIRET------DDEVEKIGIER 287 (449)
T ss_pred ------------------------------------cccEEEEEEE-CCeEEEEEeCCCCCCC------ccHHHHHHHHH
Confidence 1111111111 2356899999998542 1122221 233
Q ss_pred HHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCCh
Q 006958 166 VRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQ 245 (624)
Q Consensus 166 ~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 245 (624)
+..++.++|++++++ +++......+ ..+... ..+.|+++|+||+|+.+.... . ......++.+++.++
T Consensus 288 ~~~~~~~aD~il~Vv-D~s~~~s~~~-~~~l~~--~~~~piiiV~NK~DL~~~~~~--~------~~~~~~~i~iSAktg 355 (449)
T PRK05291 288 SREAIEEADLVLLVL-DASEPLTEED-DEILEE--LKDKPVIVVLNKADLTGEIDL--E------EENGKPVIRISAKTG 355 (449)
T ss_pred HHHHHHhCCEEEEEe-cCCCCCChhH-HHHHHh--cCCCCcEEEEEhhhccccchh--h------hccCCceEEEEeeCC
Confidence 567889999776654 5544333332 223333 446899999999999754321 1 112345778888888
Q ss_pred hhhccCCcHHHHHH
Q 006958 246 ADINKNVDMIAARR 259 (624)
Q Consensus 246 ~~~~~~~~~~~~~~ 259 (624)
.+++.++..+....
T Consensus 356 ~GI~~L~~~L~~~l 369 (449)
T PRK05291 356 EGIDELREAIKELA 369 (449)
T ss_pred CCHHHHHHHHHHHH
Confidence 88777666665544
No 24
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.51 E-value=2.9e-12 Score=138.80 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-++|+++|.+|+|||||+|+|+|.++ .+++..|...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~pgtTr------------------------------------- 239 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIKGTTR------------------------------------- 239 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCCcEE-------------------------------------
Confidence 457999999999999999999999865 34444441111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+.+.-.+.. +...+.+|||||+...... +...--.....|++++|++++++ +++......+.
T Consensus 240 ----------d~~~~~i~~-~g~~v~l~DTaG~~~~~~~-----ie~~gi~~~~~~~~~aD~il~V~-D~s~~~s~~~~- 301 (442)
T TIGR00450 240 ----------DVVEGDFEL-NGILIKLLDTAGIREHADF-----VERLGIEKSFKAIKQADLVIYVL-DASQPLTKDDF- 301 (442)
T ss_pred ----------EEEEEEEEE-CCEEEEEeeCCCcccchhH-----HHHHHHHHHHHHHhhCCEEEEEE-ECCCCCChhHH-
Confidence 011111111 2246899999998643211 12211234568899999877655 44443332222
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
+...+...+.|+|+|+||+|+.+. +...+. ..++..++.++..+ .+++++++.+....
T Consensus 302 -~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~~----~~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 302 -LIIDLNKSKKPFILVLNKIDLKIN--SLEFFV----SSKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred -HHHHHhhCCCCEEEEEECccCCCc--chhhhh----hhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 444454457899999999999654 221211 12234566666665 35555555554444
No 25
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.50 E-value=2.6e-13 Score=132.63 Aligned_cols=153 Identities=22% Similarity=0.301 Sum_probs=90.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..|.|+|+|.+|||||||+|+|+|..+.+.+....|..|...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~-------------------------------------- 81 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR-------------------------------------- 81 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE--------------------------------------
Confidence 579999999999999999999999875333332233222111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
.+..++...++||||||+.... +....+.+.... .++.++|++++++ +++..... .
T Consensus 82 ---------------~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~-D~~~~~~~~~~~ 140 (204)
T cd01878 82 ---------------RLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVV-DASDPDYEEQIE 140 (204)
T ss_pred ---------------EEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEE-ECCCCChhhHHH
Confidence 1222233479999999986432 122333344433 4567899777655 44432222 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhcc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (624)
.+..+.+.+...+.++++|+||+|+.+..... ... ......++.+++..+.++.+
T Consensus 141 ~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 141 TVEKVLKELGAEDIPMILVLNKIDLLDDEELE-ERL----EAGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred HHHHHHHHcCcCCCCEEEEEEccccCChHHHH-HHh----hcCCCceEEEEcCCCCCHHH
Confidence 33455566665678999999999997653221 111 11223456666666555443
No 26
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=143.21 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=105.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+..+|++||.||+|||||+|+|+|..- .+++..|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCC-----------------------------------------
Confidence 568999999999999999999999975 2232222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
|-+.+.|...+.. +...+.+|||.|+.+...-... ++..--.-+...+..+|. +++|+++..++..+|..
T Consensus 211 ------GTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~--~E~~Sv~rt~~aI~~a~v-vllviDa~~~~~~qD~~ 280 (444)
T COG1160 211 ------GTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITES--VEKYSVARTLKAIERADV-VLLVIDATEGISEQDLR 280 (444)
T ss_pred ------CccccceeeeEEE-CCeEEEEEECCCCCcccccccc--eEEEeehhhHhHHhhcCE-EEEEEECCCCchHHHHH
Confidence 3344556665553 4477999999999876543111 111111224467788995 45578888888888875
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCc--ccccCCCeeEEEeCChhh
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGR--SYRLQHPWVGIVNRSQAD 247 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~ 247 (624)
++..+...|..+++|+||+|+++..+...+....+ ..-..++|..++..|+..
T Consensus 281 -ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 281 -IAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred -HHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecC
Confidence 88888888999999999999998743222221110 122235777777777753
No 27
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=3.7e-13 Score=125.76 Aligned_cols=123 Identities=23% Similarity=0.367 Sum_probs=77.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-..|+++|.+||||||++|+|+|.++.+.+... +|+.+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----------------------------------------- 41 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-----------------------------------------
Confidence 468999999999999999999998752222111 11100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+. .+.......+.+|||||+...... ....+......++..+|.+++++.... .......
T Consensus 42 ------------~~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~-~~~~~~~- 101 (168)
T cd04163 42 ------------IR-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASE-PIGEGDE- 101 (168)
T ss_pred ------------EE-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCC-ccCchHH-
Confidence 00 011222357899999998764332 233355566778899998777554443 3222222
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+.+.+...+.+.++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKD 126 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhcccc
Confidence 2444454457899999999999843
No 28
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.48 E-value=3.5e-13 Score=126.88 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=71.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
|.|+|+|.+|+|||||+|+|++..+.......+|.-. .
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~---~--------------------------------------- 38 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI---G--------------------------------------- 38 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEee---c---------------------------------------
Confidence 7899999999999999999998876221111111110 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
...+....+...++++|||||.. .+..+...++..+|++++++ +++... .......
T Consensus 39 ---------~~~~~~~~~~~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d~il~v~-d~~~~~-~~~~~~~ 94 (168)
T cd01887 39 ---------AFEVPAEVLKIPGITFIDTPGHE-------------AFTNMRARGASLTDIAILVV-AADDGV-MPQTIEA 94 (168)
T ss_pred ---------cEEEecccCCcceEEEEeCCCcH-------------HHHHHHHHHHhhcCEEEEEE-ECCCCc-cHHHHHH
Confidence 00000110234689999999942 23455667788999876655 444322 2222223
Q ss_pred HHHhCCCCCceEEEeccCcccCc
Q 006958 196 AREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+..+...+.|.++|+||+|+...
T Consensus 95 ~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 95 IKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHcCCCEEEEEEceecccc
Confidence 33333457899999999998754
No 29
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.47 E-value=3.6e-13 Score=127.15 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=92.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..+|+++|++|+|||||++++++.+|-+ ....++..+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~------------------------------------------ 39 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGID------------------------------------------ 39 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccce------------------------------------------
Confidence 4689999999999999999999988622 111110000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SD 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~ 191 (624)
.....+.+.+ ....+.+||||| .+.+..+...+++++|++|+++.. +...+- ..
T Consensus 40 --------~~~~~~~~~~-~~~~l~l~D~~g-------------~~~~~~~~~~~~~~ad~~i~v~d~-~~~~s~~~~~~ 96 (167)
T cd01867 40 --------FKIRTIELDG-KKIKLQIWDTAG-------------QERFRTITTAYYRGAMGIILVYDI-TDEKSFENIRN 96 (167)
T ss_pred --------EEEEEEEECC-EEEEEEEEeCCc-------------hHHHHHHHHHHhCCCCEEEEEEEC-cCHHHHHhHHH
Confidence 0001111111 224689999999 233456677889999988776643 322222 23
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
++..++...+.+.|+++|.||+|+.+......+.........+.+|+.+++.++.++++.+..+.
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 33334444456789999999999985432111111111223345678888887777665554443
No 30
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.46 E-value=4e-13 Score=126.84 Aligned_cols=155 Identities=20% Similarity=0.256 Sum_probs=81.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|++||.+|||||||+|+|+|....+......|+.|.. |
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~-----------------------------------------~ 40 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL-----------------------------------------G 40 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc-----------------------------------------e
Confidence 48999999999999999999876411111112222200 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cc-cc-HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DI-AT-SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~-~~-~~~~ 193 (624)
. +...+...+.||||||+....... .. +.....+.+..+|++++++...+. +. .. ..+.
T Consensus 41 ----------~--~~~~~~~~~~l~DtpG~~~~~~~~--~~----~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~ 102 (170)
T cd01898 41 ----------V--VRVDDGRSFVVADIPGLIEGASEG--KG----LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIR 102 (170)
T ss_pred ----------E--EEcCCCCeEEEEecCcccCccccc--CC----chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHH
Confidence 0 111122479999999986432211 11 122233445679987776654432 11 11 1223
Q ss_pred HHHHHhCC--CCCceEEEeccCcccCccccHHHHHhCcccc-cCCCeeEEEeCChhhhccC
Q 006958 194 KLAREVDP--TGERTFGVLTKLDLMDKGTNALEVLEGRSYR-LQHPWVGIVNRSQADINKN 251 (624)
Q Consensus 194 ~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~~~~~ 251 (624)
+.+....+ .+.|.++|+||+|+.++.... +.+...... ....++.+.+.+..++++.
T Consensus 103 ~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 103 NELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGLDEL 162 (170)
T ss_pred HHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHHH
Confidence 33333332 368999999999997654321 111100011 1234566666665555443
No 31
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=6.2e-13 Score=128.59 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=74.7
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..+.|||||| .+.+..+...|++.+|++|+++...+.+ + ....++..+....+.+.|+++|+||+
T Consensus 50 ~~~~i~Dt~G-------------~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 50 VKLQIWDTAG-------------QERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEEeCCC-------------cHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 4688999999 2344666778999999877766443321 1 11234445555666678999999999
Q ss_pred cccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHHHhHh
Q 006958 214 DLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265 (624)
Q Consensus 214 D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f 265 (624)
|+..... +...+. ...+.+|+.+.+.++.++++.+..+.+...+....
T Consensus 117 Dl~~~~~~~~~~~~~l~----~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 117 DMSGERVVKREDGERLA----KEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred cchhccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 9964321 112222 22345789999998888888888777776665443
No 32
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.46 E-value=6.5e-13 Score=124.91 Aligned_cols=154 Identities=13% Similarity=0.138 Sum_probs=91.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+|+|++|||||||++++++.++.+.....++...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 40 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEF------------------------------------------ 40 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEE------------------------------------------
Confidence 46899999999999999999999886322211111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SD 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~ 191 (624)
....+.+.+ ....+.+|||||. +.+..+...|++.++++|+++...+. ..- ..
T Consensus 41 ---------~~~~~~~~~-~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~ 96 (165)
T cd01868 41 ---------ATRSIQIDG-KTIKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITKK-QTFENVER 96 (165)
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCCh-------------HHHHHHHHHHHCCCCEEEEEEECcCH-HHHHHHHH
Confidence 011111111 1246899999993 34466778899999988776654432 111 23
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (624)
++..+++..+.+.|+++|+||+|+........+.........+.+|+.+++.++.+++..+..
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 344444555557899999999998754321111111111123456888888877776554443
No 33
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.46 E-value=5.7e-13 Score=129.08 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=92.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc--cccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (624)
.+|.|+++|.+|||||||+|+|+|.++.+..++. +|+.+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 63 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI--------------------------------------- 63 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE---------------------------------------
Confidence 7899999999999999999999997643322111 11111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCE--EEEEEecCCCcccc
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSC--IILAISPANQDIAT 189 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~--iiL~V~~a~~d~~~ 189 (624)
..... ..++.||||||+.... .+....+.+..++..|+...+. ++++|++++.....
T Consensus 64 -----------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 64 -----------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred -----------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCH
Confidence 01111 2579999999976432 2333456677788888876542 23334454443333
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCcccc--HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKGTN--ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
.+ ..+.+.+...+.++++|+||+|+...+.. ..+.+..........++.+.+.++.++++....+.
T Consensus 123 ~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 123 LD-LQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred HH-HHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence 22 22334445567889999999999865421 11111110011134455666665555554444443
No 34
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.45 E-value=4.5e-13 Score=139.79 Aligned_cols=126 Identities=22% Similarity=0.293 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-++.|++||.+|||||||||+|++..........+|+.|..-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------- 198 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------- 198 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE-------------------------------------
Confidence 3578999999999999999999987532222234555552222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc--ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI--ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~--~~~~ 191 (624)
+...+...++|+||||+...+..+ ..+.....+++++++.+++++...+.+. ..++
T Consensus 199 ----------------v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~ 256 (329)
T TIGR02729 199 ----------------VRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIED 256 (329)
T ss_pred ----------------EEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHH
Confidence 111123568999999998654331 1233445566788997776554333211 1111
Q ss_pred ---HHHHHHHhCC--CCCceEEEeccCcccCc
Q 006958 192 ---AIKLAREVDP--TGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ---~~~l~~~~d~--~~~rti~VltK~D~~~~ 218 (624)
+.+.+..+.+ ...|.++|+||+|+.+.
T Consensus 257 l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 257 YEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 2222333332 36899999999999765
No 35
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=8.9e-13 Score=141.07 Aligned_cols=158 Identities=21% Similarity=0.221 Sum_probs=87.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
++.|++||.+|||||||||+|++.+.-......+|..|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~-------------------------------------- 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV-------------------------------------- 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE--------------------------------------
Confidence 449999999999999999999987621111223455552111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---cccc--
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIAT-- 189 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~---d~~~-- 189 (624)
+..++...++|+||||++..+..+ ..+.....+++++++++++++..++. +...
T Consensus 200 ---------------v~~~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~ 258 (424)
T PRK12297 200 ---------------VETDDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDY 258 (424)
T ss_pred ---------------EEEeCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCChHHHH
Confidence 111223579999999998644431 11223344567789987776654432 1111
Q ss_pred HHHHHHHHHhCC--CCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 190 SDAIKLAREVDP--TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 190 ~~~~~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
..+...+..+++ .+.|.++|+||+|+.+....+.++.+ .+...++.+++.+..++++++..+
T Consensus 259 ~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~----~l~~~i~~iSA~tgeGI~eL~~~L 322 (424)
T PRK12297 259 EKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKE----KLGPKVFPISALTGQGLDELLYAV 322 (424)
T ss_pred HHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHH----HhCCcEEEEeCCCCCCHHHHHHHH
Confidence 122223333443 47899999999997433211222221 112345555555555554444433
No 36
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.45 E-value=8.4e-13 Score=124.47 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=23.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999875
No 37
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=7.1e-13 Score=143.50 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=90.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-+..|++||.||||||||||+|++.+.-..+...+|+.|..-.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv------------------------------------- 200 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV------------------------------------- 200 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE-------------------------------------
Confidence 4679999999999999999999997632112233455552211
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC----c-cc
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ----D-IA 188 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~----d-~~ 188 (624)
+ ..+...++|+||||++..+.. ...+.....++++++++||++|..++. + +.
T Consensus 201 ----------------v-~~~~~~f~laDtPGliegas~------g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~ 257 (500)
T PRK12296 201 ----------------V-QAGDTRFTVADVPGLIPGASE------GKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLS 257 (500)
T ss_pred ----------------E-EECCeEEEEEECCCCccccch------hhHHHHHHHHHHHhcCEEEEEECCcccccccCchh
Confidence 1 112246899999999865432 122223345678889987765544321 1 11
Q ss_pred cHH-HHHHHHHhC-----------CCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 189 TSD-AIKLAREVD-----------PTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 189 ~~~-~~~l~~~~d-----------~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
..+ +...+..+. ..+.|.|+|+||+|+.+... ..+.+..........++.+++.+..++++++..+.
T Consensus 258 d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ 336 (500)
T PRK12296 258 DIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGWPVFEVSAASREGLRELSFALA 336 (500)
T ss_pred hHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 111 111122222 24689999999999975432 22222211111123455666666666555544443
Q ss_pred H
Q 006958 257 A 257 (624)
Q Consensus 257 ~ 257 (624)
.
T Consensus 337 e 337 (500)
T PRK12296 337 E 337 (500)
T ss_pred H
Confidence 3
No 38
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=7.8e-13 Score=145.44 Aligned_cols=160 Identities=19% Similarity=0.266 Sum_probs=98.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..|.|+|||.+|||||||+|+|+|..+ ..+...|
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-----~~v~~~~----------------------------------------- 70 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-----AVVEDVP----------------------------------------- 70 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-----ccccCCC-----------------------------------------
Confidence 579999999999999999999999764 2222222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+++.+.+...+.. +...+.||||||+.... ..+...+...+..|++.+|++|+++ ++.......+ .
T Consensus 71 ------gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~il~Vv-D~~~~~s~~~-~ 136 (472)
T PRK03003 71 ------GVTRDRVSYDAEW-NGRRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTADAVLFVV-DATVGATATD-E 136 (472)
T ss_pred ------CCCEeeEEEEEEE-CCcEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHH-H
Confidence 1111112111221 22468999999976322 2256677888889999999877655 5544333322 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCC-eeEEEeCChhhhccCCcHHHHH
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
.++..+...+.|+++|+||+|+.....+..+. +.++.+ .+.+++.++.+++++++.+...
T Consensus 137 ~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 137 AVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred HHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 34555555689999999999986543222222 122222 3457777777766665554443
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.45 E-value=8.8e-13 Score=124.21 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..+.+|||||. +....+...|++++|++++++...+.. ....+|+..+....+...|.++|+||+
T Consensus 50 ~~~~l~Dt~g~-------------~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 116 (165)
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence 46889999993 334667788999999887766543321 111234444444455578899999999
Q ss_pred cccCcccc-HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 214 DLMDKGTN-ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 214 D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
|+.+.... ..+..+ ....++.+|+.+.+.++.++.++++.+.
T Consensus 117 Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 117 DMEDERVVSSERGRQ-LADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ccCcccccCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99765321 111111 0112344677777777776665554443
No 40
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.44 E-value=6.5e-13 Score=129.03 Aligned_cols=166 Identities=20% Similarity=0.328 Sum_probs=93.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+|++||.+||||||++|+|+|...+.++.. .+|+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999986554431 2333321000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--H
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--A 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~--~ 192 (624)
..+ +...+++|||||+...... .+++...+...+......+|++++ |+++.. +...+ .
T Consensus 44 -------------~~~---~~~~i~viDTPG~~d~~~~--~~~~~~~i~~~~~~~~~g~~~ill-Vi~~~~-~t~~d~~~ 103 (196)
T cd01852 44 -------------AVW---DGRRVNVIDTPGLFDTSVS--PEQLSKEIVRCLSLSAPGPHAFLL-VVPLGR-FTEEEEQA 103 (196)
T ss_pred -------------EEE---CCeEEEEEECcCCCCccCC--hHHHHHHHHHHHHhcCCCCEEEEE-EEECCC-cCHHHHHH
Confidence 001 2357999999999875431 233344444444444567886555 566665 44333 2
Q ss_pred HHHHHHh-CC-CCCceEEEeccCcccCccccHHHHHhCc-------ccccCCCeeEEEeCC-----hhhhccCCcHHHHH
Q 006958 193 IKLAREV-DP-TGERTFGVLTKLDLMDKGTNALEVLEGR-------SYRLQHPWVGIVNRS-----QADINKNVDMIAAR 258 (624)
Q Consensus 193 ~~l~~~~-d~-~~~rti~VltK~D~~~~~~~~~~~l~~~-------~~~l~~g~~~v~~~s-----~~~~~~~~~~~~~~ 258 (624)
++.++++ .+ ...++++|+|+.|.+... ...+.+... ....+..|+...++. .....++++.++..
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~ 182 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESM 182 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence 3333333 21 126899999999988654 222222221 112233455565554 23334455555555
Q ss_pred HHH
Q 006958 259 RKE 261 (624)
Q Consensus 259 ~~e 261 (624)
..|
T Consensus 183 ~~~ 185 (196)
T cd01852 183 VKE 185 (196)
T ss_pred HHh
Confidence 544
No 41
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.44 E-value=8.6e-13 Score=126.21 Aligned_cols=125 Identities=26% Similarity=0.394 Sum_probs=80.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.|.|+++|.+|+||||++|+|+|..+.+.-+. .|
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~----~~----------------------------------------- 51 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSK----TP----------------------------------------- 51 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC----CC-----------------------------------------
Confidence 689999999999999999999999864222111 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcC---CCEEEEEEecCCCccccH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK---PSCIILAISPANQDIATS 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~---~~~iiL~V~~a~~d~~~~ 190 (624)
| .+.++....+ + .++.+|||||+..... +......+..+...|++. .+++++ |++++..+...
T Consensus 52 --~----~t~~~~~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~-vvd~~~~~~~~ 117 (179)
T TIGR03598 52 --G----RTQLINFFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVL-LMDIRHPLKEL 117 (179)
T ss_pred --C----cceEEEEEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEE-EecCCCCCCHH
Confidence 0 0000000111 1 3699999999765432 233345667777788864 456555 55666555544
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+. .+.+.+...+.|+++|+||+|+++.
T Consensus 118 ~~-~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 118 DL-EMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HH-HHHHHHHHcCCCEEEEEECcccCCH
Confidence 43 3455566678999999999999854
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.44 E-value=1.4e-12 Score=123.26 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+|||.+|+|||||++++++..+-+......+..+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~------------------------------------------ 41 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------------------------------------ 41 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE------------------------------------------
Confidence 46899999999999999999999876332221111111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
....+.+.+ ....+++||||| .+.+..+...|++.+|++++++. ++....-.+...
T Consensus 42 ---------~~~~~~~~~-~~~~~~i~Dt~G-------------~~~~~~~~~~~~~~~d~il~v~d-~~~~~s~~~~~~ 97 (168)
T cd01866 42 ---------GARMITIDG-KQIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYD-ITRRETFNHLTS 97 (168)
T ss_pred ---------EEEEEEECC-EEEEEEEEECCC-------------cHHHHHHHHHHhccCCEEEEEEE-CCCHHHHHHHHH
Confidence 011111111 124689999999 23456777889999998777554 443222233333
Q ss_pred HHHHh---CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 195 LAREV---DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 195 l~~~~---d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+..++ ...+.|.++|.||+|+.++.....+.........+..|+.+.+.+..++++.+..+.
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 33322 334688999999999974332111111111122345677777777777665544433
No 43
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.43 E-value=9.9e-13 Score=122.99 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=84.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|++|||||||+++++|.++.+......|..+..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 39 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLS------------------------------------------ 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEE------------------------------------------
Confidence 58999999999999999999998633211111111100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~ 193 (624)
..+.+.+ ....+.+||||| ......++..+++.+|++|+++. .+..-.-. .++
T Consensus 40 ---------~~~~~~~-~~~~l~~~D~~G-------------~~~~~~~~~~~~~~~~~ii~v~d-~~~~~s~~~~~~~~ 95 (161)
T cd01861 40 ---------KTMYLED-KTVRLQLWDTAG-------------QERFRSLIPSYIRDSSVAVVVYD-ITNRQSFDNTDKWI 95 (161)
T ss_pred ---------EEEEECC-EEEEEEEEECCC-------------cHHHHHHHHHHhccCCEEEEEEE-CcCHHHHHHHHHHH
Confidence 0111111 113589999999 23346678889999998777554 43321112 233
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCC
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (624)
.......+.+.|+++|+||+|+........+...........+++.+++....++++..
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHH
Confidence 22222233368999999999996433211111111111223456666666555554433
No 44
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.8e-12 Score=132.20 Aligned_cols=154 Identities=23% Similarity=0.256 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcc
Q 006958 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDY 86 (624)
Q Consensus 7 l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~ 86 (624)
++....-++++++.+...+. ...+ -.-++||++|.||+|||||||+|+..+. .+|+..|
T Consensus 242 ~~~~~~l~d~v~s~l~~~~~-~e~l-q~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~-------------- 300 (531)
T KOG1191|consen 242 FIESLSLLDDVLSHLNKADE-IERL-QSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP-------------- 300 (531)
T ss_pred hhHHHHHHHHHHHHHHhhhh-HHHh-hcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC--------------
Confidence 34344434467766654221 1111 2458999999999999999999999988 7777777
Q ss_pred eeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHH
Q 006958 87 AEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMV 166 (624)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~ 166 (624)
|-+.|.|...+. ++..++.|+||.|+.+.... .++..--+-.
T Consensus 301 ---------------------------------GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~rA 342 (531)
T KOG1191|consen 301 ---------------------------------GTTRDAIEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIERA 342 (531)
T ss_pred ---------------------------------CcchhhheeEee-cCCeEEEEEeccccccccCC----hhHHHhHHHH
Confidence 122344444444 66688999999999882221 1333345567
Q ss_pred HHhhcCCCEEEEEEecCCCccccHHH--HHHHHHhC---------CCCCceEEEeccCcccCccc
Q 006958 167 RSYVEKPSCIILAISPANQDIATSDA--IKLAREVD---------PTGERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 167 ~~yi~~~~~iiL~V~~a~~d~~~~~~--~~l~~~~d---------~~~~rti~VltK~D~~~~~~ 220 (624)
++.++.+|.|++ |++++..+..++. ...+.... ....|.|.|.||.|+..+..
T Consensus 343 ~k~~~~advi~~-vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 343 RKRIERADVILL-VVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred HHHHhhcCEEEE-EecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 788899996555 5555332222222 12222211 12378999999999988743
No 45
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.43 E-value=1.1e-12 Score=143.26 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=97.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|++||.+|+|||||+|+|+|... .++...|.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~g------------------------------------------- 32 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-----AIVSDTPG------------------------------------------- 32 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-----ceecCCCC-------------------------------------------
Confidence 489999999999999999999864 22222220
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
.+.+.....+.. +...+.||||||+... ...+.+.+...+..+++.+|++++ |+++.......+. .++
T Consensus 33 ----~t~d~~~~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~-vvD~~~~~~~~d~-~i~ 100 (429)
T TIGR03594 33 ----VTRDRKYGDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILF-VVDGREGLTPEDE-EIA 100 (429)
T ss_pred ----cccCceEEEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEE-EEeCCCCCCHHHH-HHH
Confidence 111111111111 2246999999998532 233667888889999999997666 4566555544442 355
Q ss_pred HHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCC-CeeEEEeCChhhhccCCcHHH
Q 006958 197 REVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 197 ~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+.+...+.|+++|+||+|+........++ +.++. .++.+++..+.++.++++...
T Consensus 101 ~~l~~~~~piilVvNK~D~~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 101 KWLRKSGKPVILVANKIDGKKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred HHHHHhCCCEEEEEECccCCcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHHHHH
Confidence 55555689999999999997654333222 23333 356666666666555444443
No 46
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.42 E-value=1.8e-12 Score=122.22 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=90.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|+++|++++|||||++++.+..|.+.... ++....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~-t~~~~~------------------------------------------ 39 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-TIGVEF------------------------------------------ 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc-ccceeE------------------------------------------
Confidence 3699999999999999999999876322111 110000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAI 193 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~ 193 (624)
....+.+.+ ....+.+||||| .+.+..+...|++++|++|+++...+.. -....++
T Consensus 40 --------~~~~~~~~~-~~~~l~i~Dt~G-------------~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~ 97 (166)
T cd04122 40 --------GTRIIEVNG-QKIKLQIWDTAG-------------QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL 97 (166)
T ss_pred --------EEEEEEECC-EEEEEEEEECCC-------------cHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 001111111 124689999999 3445677888999999988876554421 1112333
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
..++.....+.++++|.||+|+........+.........+..|+.+++.++.++.+.+.
T Consensus 98 ~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~ 157 (166)
T cd04122 98 TDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFL 157 (166)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 334444445688999999999975432111111111112345677888877777665443
No 47
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.42 E-value=1.3e-12 Score=123.08 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=90.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|+|.+|+|||||++++++.+|.+ .. ..|-.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~-~~t~~~------------------------------------------- 37 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SY-ISTIGV------------------------------------------- 37 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CC-CCccce-------------------------------------------
Confidence 579999999999999999999887621 11 011000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAI 193 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~ 193 (624)
......+.+.+ ....+.+|||||. +....+...|++++|++|+++...+.+ .....++
T Consensus 38 ------~~~~~~~~~~~-~~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~ 97 (166)
T cd01869 38 ------DFKIRTIELDG-KTIKLQIWDTAGQ-------------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL 97 (166)
T ss_pred ------eEEEEEEEECC-EEEEEEEEECCCc-------------HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHH
Confidence 00001111111 1246889999992 334667788999999988876544321 1112233
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
..++.....+.|.++|.||+|+........+.........+.+|+.+++..+.++.+.+..+
T Consensus 98 ~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 98 QEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred HHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 33444444568999999999986543211111111112334567888888777766555443
No 48
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=2.4e-12 Score=140.75 Aligned_cols=156 Identities=22% Similarity=0.296 Sum_probs=95.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
.|.|++||.+|+|||||+|+|+|... ..+...|
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~-----~~v~~~~------------------------------------------ 33 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRD-----AIVADTP------------------------------------------ 33 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeeCCCC------------------------------------------
Confidence 37899999999999999999999864 1222222
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
+.+.+...-.+.. +...+.+|||||+.... ++....+...+..++..+|+++++| ++.......+. .
T Consensus 34 -----~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vv-d~~~~~~~~~~-~ 100 (435)
T PRK00093 34 -----GVTRDRIYGEAEW-LGREFILIDTGGIEPDD-----DGFEKQIREQAELAIEEADVILFVV-DGRAGLTPADE-E 100 (435)
T ss_pred -----CCcccceEEEEEE-CCcEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHH-H
Confidence 0111111111111 12679999999987521 1255667778888999999877655 55443333332 2
Q ss_pred HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCC-eeEEEeCChhhhccCCcHH
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~ 255 (624)
+++.+...+.|+++|+||+|..+......+. +.++.+ ++.+++..+.++.+.++.+
T Consensus 101 ~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~I 157 (435)
T PRK00093 101 IAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDAI 157 (435)
T ss_pred HHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHHH
Confidence 3444444589999999999976532222222 233333 5667777666665554433
No 49
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=3.1e-12 Score=140.74 Aligned_cols=127 Identities=24% Similarity=0.309 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+++|.+|+|||||+|+|+|..+. .++..|
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~-----~~s~~~----------------------------------------- 243 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS-----VVDDVA----------------------------------------- 243 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc-----cccCCC-----------------------------------------
Confidence 5689999999999999999999998752 222222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHH-HHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENM-VRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~-~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
| .+.+.+...+.. +...+.||||||+.+.... ....+.+..+ ...+++++|++|+++ +++.....++.
T Consensus 244 --g----tT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~---~~~~e~~~~~~~~~~i~~ad~vilV~-Da~~~~s~~~~ 312 (472)
T PRK03003 244 --G----TTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQ---ASGHEYYASLRTHAAIEAAEVAVVLI-DASEPISEQDQ 312 (472)
T ss_pred --C----ccCCcceEEEEE-CCEEEEEEECCCccccccc---cchHHHHHHHHHHHHHhcCCEEEEEE-eCCCCCCHHHH
Confidence 0 001111111111 2245789999998653221 1113333333 345789999877755 55554444443
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+...+.++|+|+||+|+.+.
T Consensus 313 -~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 313 -RVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred -HHHHHHHHcCCCEEEEEECcccCCh
Confidence 4566666678999999999999753
No 50
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.4e-12 Score=142.41 Aligned_cols=155 Identities=21% Similarity=0.283 Sum_probs=102.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-.+|+++|+||+||||++|+|+|.+. .+.+.|-+.. ++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q------~VgNwpGvTV-----------------------------------Ekk 41 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ------KVGNWPGVTV-----------------------------------EKK 41 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc------eecCCCCeeE-----------------------------------EEE
Confidence 35699999999999999999999873 3333442221 111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.| ........+++||+||+++......+ +..+++|+. ++|+||-+|++.| -+..
T Consensus 42 eg-------------~~~~~~~~i~ivDLPG~YSL~~~S~D-------E~Var~~ll~~~~D~ivnVvDAtn----LeRn 97 (653)
T COG0370 42 EG-------------KLKYKGHEIEIVDLPGTYSLTAYSED-------EKVARDFLLEGKPDLIVNVVDATN----LERN 97 (653)
T ss_pred EE-------------EEEecCceEEEEeCCCcCCCCCCCch-------HHHHHHHHhcCCCCEEEEEcccch----HHHH
Confidence 12 11222356999999999987665211 556778884 6897766555555 4556
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
+.+.-++-..|.|+|+++|++|..++.....+.-+- ...++.+-+.++...++++++.+...
T Consensus 98 LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L-~~~LGvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 98 LYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKL-SKLLGVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHH-HHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 666667777899999999999998775422221110 24566777888888877766555433
No 51
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.41 E-value=1.8e-12 Score=114.66 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=73.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccc-cccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
+|+|+|.+|||||||+|+|+|.+..+.+. ..+|+.+.. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~--------------------------------------- 40 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-G--------------------------------------- 40 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-E---------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-e---------------------------------------
Confidence 68999999999999999999975433332 234444411 1
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
...-+...+.|+||||+......+ ........+.+.+..+|.+++++. ++. ........+
T Consensus 41 --------------~~~~~~~~~~~vDtpG~~~~~~~~----~~~~~~~~~~~~~~~~d~ii~vv~-~~~-~~~~~~~~~ 100 (116)
T PF01926_consen 41 --------------QFEYNNKKFILVDTPGINDGESQD----NDGKEIRKFLEQISKSDLIIYVVD-ASN-PITEDDKNI 100 (116)
T ss_dssp --------------EEEETTEEEEEEESSSCSSSSHHH----HHHHHHHHHHHHHCTESEEEEEEE-TTS-HSHHHHHHH
T ss_pred --------------eeeeceeeEEEEeCCCCcccchhh----HHHHHHHHHHHHHHHCCEEEEEEE-CCC-CCCHHHHHH
Confidence 000123567899999988643321 101123335555588998776555 554 323334456
Q ss_pred HHHhCCCCCceEEEecc
Q 006958 196 AREVDPTGERTFGVLTK 212 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK 212 (624)
++++. .+.|+++|+||
T Consensus 101 ~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 101 LRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHH-TTSEEEEEEES
T ss_pred HHHHh-cCCCEEEEEcC
Confidence 67776 78999999998
No 52
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.41 E-value=3.3e-12 Score=120.44 Aligned_cols=128 Identities=23% Similarity=0.301 Sum_probs=76.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
.++|+++|.+|+||||++|+|+|..+.+.+....|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRD------------------------------------------ 39 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccC------------------------------------------
Confidence 47899999999999999999999865322221111100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
.....+. .+..++++|||||+...... ..............++..+|++++++ +++...... ...
T Consensus 40 ----------~~~~~~~-~~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~-d~~~~~~~~-~~~ 104 (174)
T cd01895 40 ----------SIDVPFE-YDGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVI-DATEGITEQ-DLR 104 (174)
T ss_pred ----------ceeeEEE-ECCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEE-eCCCCcchh-HHH
Confidence 0000011 12346899999998765321 11111111122345677899777655 555444433 334
Q ss_pred HHHHhCCCCCceEEEeccCcccCcc
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+.+.+...+.+.++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 105 IAGLILEEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHHHHhcCCCEEEEEeccccCCcc
Confidence 5555555578999999999998663
No 53
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.41 E-value=4.8e-12 Score=138.14 Aligned_cols=125 Identities=21% Similarity=0.295 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
..+.|+++|.+|+|||||+|+|+|.+..+.+.. .+|+-+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~---------------------------------------- 210 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS---------------------------------------- 210 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc----------------------------------------
Confidence 457899999999999999999999864222111 111111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
+...+.. +...+++|||||+.+..... +.++.........+++.+|++|+++ ++......++.
T Consensus 211 -------------~~~~~~~-~~~~~~liDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilV~-D~~~~~~~~~~ 273 (429)
T TIGR03594 211 -------------IDIPFER-NGKKYLLIDTAGIRRKGKVT--EGVEKYSVLRTLKAIERADVVLLVL-DATEGITEQDL 273 (429)
T ss_pred -------------EeEEEEE-CCcEEEEEECCCccccccch--hhHHHHHHHHHHHHHHhCCEEEEEE-ECCCCccHHHH
Confidence 1111211 22468999999987644321 1122212233456889999877654 55555555443
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
.+++.+...+.+.|+|+||+|+.
T Consensus 274 -~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 274 -RIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred -HHHHHHHHcCCcEEEEEECcccC
Confidence 46666666689999999999998
No 54
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.41 E-value=1.5e-12 Score=126.78 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=92.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
||+|+|+.++||||++.++.+..| +.... |+. |
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~-----~Ti-----------------------------------------~ 34 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACK-----SGV-----------------------------------------G 34 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCC-----Ccc-----------------------------------------e
Confidence 799999999999999999998876 21110 100 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~~~ 194 (624)
.+|.. ..+.+.+ ....+.|||||| .+.++.+...|++++|++|+|+...+.+ + ....|+.
T Consensus 35 --~~~~~--~~i~~~~-~~v~l~iwDtaG-------------qe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~ 96 (202)
T cd04120 35 --VDFKI--KTVELRG-KKIRLQIWDTAG-------------QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 96 (202)
T ss_pred --eEEEE--EEEEECC-EEEEEEEEeCCC-------------chhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 00111 1111211 236789999999 4456788889999999988866544321 1 1123455
Q ss_pred HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccc-cCCCeeEEEeCChhhhccCCcHHH
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYR-LQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
.++.....+.++++|.||+|+.+............... .+..|+.+++.++.++++.+..+.
T Consensus 97 ~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 97 MIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred HHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 55555556789999999999965332111111100001 134577777777776666554443
No 55
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.40 E-value=2e-12 Score=121.03 Aligned_cols=99 Identities=22% Similarity=0.297 Sum_probs=55.2
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEecc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--~~~~l~~~~d~~~~rti~VltK 212 (624)
...+++|||||. +.+......++..+|++++++ +++.++..+ +.+.+++... ..+.++|+||
T Consensus 50 ~~~~~~~DtpG~-------------~~~~~~~~~~~~~ad~ii~V~-d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGH-------------EKFIKNMLAGAGGIDLVLLVV-AADEGIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCCh-------------HHHHHHHHhhhhcCCEEEEEE-ECCCCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 357999999993 223444567788999877655 554433222 2233333321 2489999999
Q ss_pred CcccCccc------cHHHHHhCcccccCCCeeEEEeCChhhhcc
Q 006958 213 LDLMDKGT------NALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (624)
Q Consensus 213 ~D~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (624)
+|+..... +..+.+.... .....++.+++.++.++++
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 114 ADLVDEDWLELVEEEIRELLAGTF-LADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEeCCCCcCHHH
Confidence 99976421 1122222100 0134566666666665544
No 56
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=5.4e-13 Score=123.03 Aligned_cols=160 Identities=23% Similarity=0.264 Sum_probs=103.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.-.||++|+||+|||||+++..-..| +.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f---------------------------------------------------d~ 49 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF---------------------------------------------------DN 49 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh---------------------------------------------------cc
Confidence 556899999999999999999997766 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe--cCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS--PANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~--~a~~d~~~~~ 191 (624)
..+.+.|++...-.+.+.+. ...|.||||.| ++.++.++-+|++++.++|++.. +.++...+..
T Consensus 50 ~YqATIGiDFlskt~~l~d~-~vrLQlWDTAG-------------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~k 115 (221)
T KOG0094|consen 50 TYQATIGIDFLSKTMYLEDR-TVRLQLWDTAG-------------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSK 115 (221)
T ss_pred cccceeeeEEEEEEEEEcCc-EEEEEEEeccc-------------HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHH
Confidence 11223344443344444443 36799999999 89999999999999998776543 3333445556
Q ss_pred HHHHHHHhCCC-CCceEEEeccCcccCccccHHHHHhCc--ccccCCCeeEEEeCChhhhccCCcHHHHHHH
Q 006958 192 AIKLAREVDPT-GERTFGVLTKLDLMDKGTNALEVLEGR--SYRLQHPWVGIVNRSQADINKNVDMIAARRK 260 (624)
Q Consensus 192 ~~~l~~~~d~~-~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (624)
|+.-++.-... +..+++|.||.||.++..- ...+|+ ...++.-|..+....+.++..++..+.+.+.
T Consensus 116 Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqv--s~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 116 WIEDVRRERGSDDVIIFLVGNKTDLSDKRQV--SIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred HHHHHHhccCCCceEEEEEcccccccchhhh--hHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 66544444333 4677899999999987431 111221 2233344667777777666655554444433
No 57
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=3.1e-12 Score=147.28 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=102.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.+|.|+++|.+|+|||||+|+|+|..+ .++...|...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pGvT-------------------------------------- 310 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPGVT-------------------------------------- 310 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCee--------------------------------------
Confidence 578999999999999999999999864 3333333211
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.+.+..... .+...+.+|||||+.... +.+...+.+.+..+++.+|+++++ ++++..+...+.
T Consensus 311 ---------~d~~~~~~~-~~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~iL~V-vDa~~~~~~~d~- 373 (712)
T PRK09518 311 ---------RDRVSYDAE-WAGTDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLADAVVFV-VDGQVGLTSTDE- 373 (712)
T ss_pred ---------EEEEEEEEE-ECCEEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCCEEEEE-EECCCCCCHHHH-
Confidence 111111111 123568999999976422 236677788888999999977664 455554444433
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCC-eeEEEeCChhhhccCCcHHHHHH
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.+++.+...+.|+|+|+||+|+........+.. .++.+ .+.+++..+.++.++++.+....
T Consensus 374 ~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~-----~lg~~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 374 RIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFW-----KLGLGEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred HHHHHHHhcCCCEEEEEECcccccchhhHHHHH-----HcCCCCeEEEECCCCCCchHHHHHHHHhc
Confidence 355666667899999999999875432222221 12221 24566666677766665554443
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.40 E-value=2.7e-12 Score=120.58 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=87.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++++|||||++++++..+.+.. .|+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~------~~t------------------------------------------- 32 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKY------LPT------------------------------------------- 32 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC------CCc-------------------------------------------
Confidence 6999999999999999999998862211 110
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~~ 194 (624)
.+++.....+.+.+ ....+.+|||||. +....+...|++.+|++|+++...+.. -....++.
T Consensus 33 --~~~~~~~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~ 96 (168)
T cd04119 33 --IGIDYGVKKVSVRN-KEVRVNFFDLSGH-------------PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLK 96 (168)
T ss_pred --cceeEEEEEEEECC-eEEEEEEEECCcc-------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHH
Confidence 00000111111211 2357899999993 234566778889999888866543321 11123333
Q ss_pred HHHHh-CC----CCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 195 LAREV-DP----TGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 195 l~~~~-d~----~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
.+... .+ .+.|+++|+||+|+.++.. . ...... ..+..|+.+.+.++.++.+.+..+
T Consensus 97 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 97 EMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE----SKGFKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred HHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH----HcCCeEEEEECCCCCCHHHHHHHH
Confidence 33332 22 4689999999999974321 1 112221 223457777777776665554443
No 59
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.40 E-value=2.8e-12 Score=120.10 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=89.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++++|||||+++|++..+-+......+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~--------------------------------------------- 36 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE--------------------------------------------- 36 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee---------------------------------------------
Confidence 68999999999999999999987633221111100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~ 193 (624)
.....+.+. .....+.||||||. +.+..+...+++++|++|+++...+ ..+.. .++
T Consensus 37 ------~~~~~~~~~-~~~~~l~l~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~ 95 (161)
T cd04113 37 ------FGSKIIRVG-GKRVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVYDITN-RTSFEALPTWL 95 (161)
T ss_pred ------EEEEEEEEC-CEEEEEEEEECcch-------------HHHHHhHHHHhcCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 000111111 12246889999993 3446677889999998887665443 22222 333
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
..++.....+.+.++|+||+|+........+............|+.+++.+..++.+.+.
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFL 155 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 333444445789999999999975432111111111112335677788777776655443
No 60
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.40 E-value=3.5e-12 Score=119.49 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=86.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|+++||||||++++++..+-+......+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDF-------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEE--------------------------------------------
Confidence 689999999999999999999875221111111000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
....+.+. .....+.+||+|| ...+..+...+++.+|++|+++...+ ..+.+....+.
T Consensus 38 -------~~~~~~~~-~~~~~~~l~D~~G-------------~~~~~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~l 95 (164)
T smart00175 38 -------KTKTIEVD-GKRVKLQIWDTAG-------------QERFRSITSSYYRGAVGALLVYDITN-RESFENLKNWL 95 (164)
T ss_pred -------EEEEEEEC-CEEEEEEEEECCC-------------hHHHHHHHHHHhCCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 00111111 1124688999999 23345677888999998888765543 22222222222
Q ss_pred H---HhCCCCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 197 R---EVDPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 197 ~---~~d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
. .....+.|+++|+||+|+..... + ..++. ...+..|+.+....+.++.+.+..+.
T Consensus 96 ~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 96 KELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA----EEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred HHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 2 22334789999999999875322 1 12222 12334566666666655554444333
No 61
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.39 E-value=2.5e-12 Score=122.82 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhC-CCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVD-PTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~~l~~~~d-~~~~rti~Vlt 211 (624)
..+.|||||| .+.+..+...|++++|++|+++...+ .-+-. .++....... ..+.|+++|.|
T Consensus 63 ~~~~i~Dt~G-------------~~~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 63 IHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDLTN-EQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEEeCCC-------------hHHHHHHHHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 4588999999 45567788899999998877655433 22222 2222222221 23578999999
Q ss_pred cCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 212 KLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
|+|+.+......+.........+..|+.+++.++.++++.+..+
T Consensus 129 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 129 KADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred CccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99997542211111111011223457777777666665554443
No 62
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.39 E-value=1.8e-12 Score=121.34 Aligned_cols=151 Identities=19% Similarity=0.178 Sum_probs=84.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|++|||||||++++++..| +....++++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~------------------------------------------- 37 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDS------------------------------------------- 37 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhh-------------------------------------------
Confidence 4799999999999999999998765 22111111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~ 192 (624)
.. ..+.+. .....+.||||||.. .+..+...|++++|++++++...+. .+-. .+
T Consensus 38 ------~~--~~~~~~-~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~ 94 (163)
T cd04136 38 ------YR--KQIEVD-GQQCMLEILDTAGTE-------------QFTAMRDLYIKNGQGFVLVYSITSQ-SSFNDLQDL 94 (163)
T ss_pred ------EE--EEEEEC-CEEEEEEEEECCCcc-------------ccchHHHHHhhcCCEEEEEEECCCH-HHHHHHHHH
Confidence 00 011111 122467899999942 2355667889999988776644332 1112 22
Q ss_pred HHHHHHh-CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 193 IKLAREV-DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 193 ~~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
...+... ...+.|.++|+||+|+.+......+.........+.+|+.+++.++.++.+.+.
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 95 REQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 2223322 334689999999999875432111111100112235677777777666655443
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.39 E-value=2.4e-12 Score=120.73 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=59.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHH-HHHHhCCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIK-LAREVDPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~~-l~~~~d~~~~rti~Vlt 211 (624)
..+.+|||||.. .+..+...|++.+|++++++...+. ..-. .+.. +.+.....+.|+++|+|
T Consensus 50 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQE-------------EFSAMREQYMRTGEGFLLVFSVTDR-GSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 468899999943 2355677899999988876644332 1111 2222 22223445789999999
Q ss_pred cCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 212 KLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
|+|+.+................+..|+.+++.++.++++.+.
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 116 KADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFH 157 (164)
T ss_pred CccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHH
Confidence 999975432111111111112334677777776666655443
No 64
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.39 E-value=2.3e-12 Score=127.04 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=90.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|++||++|+|||||++++++..| +... .|+.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~-----~~T~------------------------------------------ 33 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSY-----KQTI------------------------------------------ 33 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCC-----CCce------------------------------------------
Confidence 589999999999999999998875 2211 1110
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~-~~~~~~ 194 (624)
++......+.+.+.....+.|||||| .+....+...|++++|++|+++...+.. +. ...|..
T Consensus 34 ---~~d~~~~~i~~~~~~~~~~~i~Dt~G-------------~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~ 97 (215)
T cd04109 34 ---GLDFFSKRVTLPGNLNVTLQVWDIGG-------------QSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYS 97 (215)
T ss_pred ---eEEEEEEEEEeCCCCEEEEEEEECCC-------------cHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00000111112222235688999999 2344677888999999888866544321 11 122334
Q ss_pred HHHHhCC---CCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHH
Q 006958 195 LAREVDP---TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 195 l~~~~d~---~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
.++...+ .+.++++|.||+|+........+.........+.+|+.+++.++.++++.+..+...
T Consensus 98 ~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 98 MVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred HHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4444322 245789999999997433211111111111233567777877777776665555443
No 65
>PRK04213 GTP-binding protein; Provisional
Probab=99.38 E-value=3.1e-12 Score=124.69 Aligned_cols=123 Identities=22% Similarity=0.374 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
..+.|+++|.+|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 568999999999999999999999874 32211 111111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc-C---CCEEEEEEecCCCccc
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-K---PSCIILAISPANQDIA 188 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~-~---~~~iiL~V~~a~~d~~ 188 (624)
..+.. .++++|||||+..... -++...+.++.+...|+. . ++.+++ |+++.....
T Consensus 47 -------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~-v~d~~~~~~ 105 (201)
T PRK04213 47 -------------NHYDW-----GDFILTDLPGFGFMSG--VPKEVQEKIKDEIVRYIEDNADRILAAVL-VVDGKSFIE 105 (201)
T ss_pred -------------eEEee-----cceEEEeCCccccccc--cCHHHHHHHHHHHHHHHHhhhhhheEEEE-EEeCccccc
Confidence 11111 1589999999743221 122235667777777765 3 354444 445443211
Q ss_pred c----------HHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 189 T----------SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 189 ~----------~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
. .....+.+.+...+.|.++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 0 11122334444457899999999999754
No 66
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.38 E-value=4.1e-12 Score=123.50 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=88.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
+|+|+|++|+|||||++++++.+| |....+++......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~----------------------------------------- 39 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYR----------------------------------------- 39 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccce-----------------------------------------
Confidence 689999999999999999999876 33221111111000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH---H
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---I 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~---~ 193 (624)
..+.+. .....+.||||||....+.. ...........+++.+|++|+++...+. .+...+ .
T Consensus 40 ---------~~i~~~-~~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~~-~S~~~~~~~~ 103 (198)
T cd04142 40 ---------PAVVLS-GRVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICSP-DSFHYVKLLR 103 (198)
T ss_pred ---------eEEEEC-CEEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCCH-HHHHHHHHHH
Confidence 001111 11246889999997543211 1222233455678999988776654432 211212 2
Q ss_pred HHHHHh---CCCCCceEEEeccCcccCccccHHHHHhCc-ccccCCCeeEEEeCChhhhccCCc
Q 006958 194 KLAREV---DPTGERTFGVLTKLDLMDKGTNALEVLEGR-SYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 194 ~l~~~~---d~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
+.+... ...+.|+++|.||+|+........+.++.. ....+.+|+.+++.++.++++.+.
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHH
Confidence 222222 245789999999999965422111111100 112346788888887777655443
No 67
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.38 E-value=2.8e-12 Score=120.64 Aligned_cols=120 Identities=20% Similarity=0.257 Sum_probs=75.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+|+|++|||||||++++.+..|.+.. . .|..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~-~-~t~~------------------------------------------- 37 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ-G-NTIG------------------------------------------- 37 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC-C-Cccc-------------------------------------------
Confidence 468999999999999999999987652211 1 0100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~ 192 (624)
.......+.+. .....+.|||||| .+.+..+...+++.+|++++++...+.. + ....+
T Consensus 38 ------~~~~~~~~~~~-~~~~~l~i~D~~G-------------~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~ 97 (165)
T cd01864 38 ------VDFTMKTLEIE-GKRVKLQIWDTAG-------------QERFRTITQSYYRSANGAIIAYDITRRSSFESVPHW 97 (165)
T ss_pred ------eEEEEEEEEEC-CEEEEEEEEECCC-------------hHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHH
Confidence 00000111111 1124689999999 3445677888999999888766544321 1 11234
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+..+....+.+.|.++|+||+|+....
T Consensus 98 ~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 98 IEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred HHHHHHhCCCCCcEEEEEECccccccc
Confidence 444444555678999999999997543
No 68
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.38 E-value=6.7e-12 Score=117.77 Aligned_cols=103 Identities=21% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEec
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLT 211 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~~l~~~~d~~~~rti~Vlt 211 (624)
...+.+||||| .+....+...+++++|++++++. .+....- ..++..+.... .+.|.++|+|
T Consensus 51 ~~~l~i~Dt~G-------------~~~~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~n 115 (164)
T cd04101 51 TVELFIFDSAG-------------QELYSDMVSNYWESPSVFILVYD-VSNKASFENCSRWVNKVRTAS-KHMPGVLVGN 115 (164)
T ss_pred EEEEEEEECCC-------------HHHHHHHHHHHhCCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 35789999999 34556788889999998877654 4322111 22333333333 3589999999
Q ss_pred cCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCC
Q 006958 212 KLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (624)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (624)
|+|+.+.........+......+..|+.+++....++.+.+
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 156 (164)
T cd04101 116 KMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPF 156 (164)
T ss_pred CcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHH
Confidence 99996543211111110012223456666666655554433
No 69
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.38 E-value=2e-12 Score=120.06 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
..+.+|||||+..... .....+...+..++..+|.+++++. +.......+. .+.+.+...+.|+++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d-~~~~~~~~~~-~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVD-GREGLTPADE-EIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEe-ccccCCccHH-HHHHHHHhcCCCEEEEEECccc
Confidence 5689999999875432 2344455566778889997776554 4433322222 2344444457999999999999
Q ss_pred cCcc
Q 006958 216 MDKG 219 (624)
Q Consensus 216 ~~~~ 219 (624)
....
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 8653
No 70
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.37 E-value=3e-12 Score=120.19 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=85.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
+|+|+|++|||||||++++.+..+ +.....++...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~-------------------------------------------- 36 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDS-------------------------------------------- 36 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhh--------------------------------------------
Confidence 689999999999999999999875 22111111000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~ 193 (624)
....+.+ ......+.+|||||..+ +..+...|++.+|++++++.. +..-+- ..+.
T Consensus 37 -------~~~~~~~-~~~~~~l~i~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~d~-~~~~s~~~~~~~~ 94 (164)
T smart00173 37 -------YRKQIEI-DGEVCLLDILDTAGQEE-------------FSAMRDQYMRTGEGFLLVYSI-TDRQSFEEIKKFR 94 (164)
T ss_pred -------EEEEEEE-CCEEEEEEEEECCCccc-------------chHHHHHHHhhCCEEEEEEEC-CCHHHHHHHHHHH
Confidence 0001111 11235688999999432 355667788999987776543 322111 1222
Q ss_pred HH-HHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 194 KL-AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 194 ~l-~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
.. .+.......|+++|+||+|+.+......+.........+.+|+.+++.++.++++.+..+
T Consensus 95 ~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 157 (164)
T smart00173 95 EQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence 22 222333467999999999997643211111111111233567777777777666554433
No 71
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.37 E-value=6.6e-12 Score=120.55 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=71.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|.+|||||||++++.+..+.. ..|+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~-------~~~t------------------------------------------- 34 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVN-------TVPT------------------------------------------- 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCC-------cCCc-------------------------------------------
Confidence 69999999999999999999877521 1121
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH--
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK-- 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~-- 194 (624)
.++....+.+.+.......+.+|||||. +.+..+...|++.+|++++++...+. -....+..
T Consensus 35 --~~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~D~~~~-~~~~~~~~~~ 98 (183)
T cd04152 35 --KGFNTEKIKVSLGNSKGITFHFWDVGGQ-------------EKLRPLWKSYTRCTDGIVFVVDSVDV-ERMEEAKTEL 98 (183)
T ss_pred --cccceeEEEeeccCCCceEEEEEECCCc-------------HhHHHHHHHHhccCCEEEEEEECCCH-HHHHHHHHHH
Confidence 0111111222222223457899999993 33466778899999988776654332 11122211
Q ss_pred --HHHHhCCCCCceEEEeccCcccC
Q 006958 195 --LAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 195 --l~~~~d~~~~rti~VltK~D~~~ 217 (624)
+.+.....+.|+++|+||+|+..
T Consensus 99 ~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 99 HKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHhhhhcCCCcEEEEEECcCccc
Confidence 22323345789999999999864
No 72
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.37 E-value=6.1e-12 Score=117.87 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=85.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|+++||||||+|++++.++.+.. ...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~------------------------------------------- 38 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAF------------------------------------------- 38 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeE-------------------------------------------
Confidence 6899999999999999999999863311 11111000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~-~~~~~~ 194 (624)
....+.+. .....+.+||+|| .+.+..+...|++++|++++++...+.+ +. ...++.
T Consensus 39 -------~~~~v~~~-~~~~~~~i~D~~G-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 97 (163)
T cd01860 39 -------LTQTVNLD-DTTVKFEIWDTAG-------------QERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVK 97 (163)
T ss_pred -------EEEEEEEC-CEEEEEEEEeCCc-------------hHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHH
Confidence 00011111 1224588999999 2334566677899999888876554321 11 122233
Q ss_pred HHHHhCCCCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
.++.....+.+.++|+||+|+.+... . ..++.. .....|+.+++.++.++.+.+.
T Consensus 98 ~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd01860 98 ELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYAD----ENGLLFFETSAKTGENVNELFT 156 (163)
T ss_pred HHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHH----HcCCEEEEEECCCCCCHHHHHH
Confidence 33333334678999999999874322 1 122222 2234577777776666554443
No 73
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.37 E-value=4.5e-12 Score=119.80 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=86.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|.++||||||++++++..+.+.....++..+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~------------------------------------------- 38 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------------------------------------- 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEE-------------------------------------------
Confidence 6899999999999999999998762221111111000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~ 193 (624)
...+.+.+ ....+.+||+||. +....+...|++++|++|+++...+ ..... .+.
T Consensus 39 --------~~~~~~~~-~~~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~ 95 (172)
T cd01862 39 --------TKEVTVDD-KLVTLQIWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVTN-PKSFESLDSWR 95 (172)
T ss_pred --------EEEEEECC-EEEEEEEEeCCCh-------------HHHHhHHHHHhcCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 00111111 2245789999993 3345677789999998877664433 21111 121
Q ss_pred H-HHHHhC---CCCCceEEEeccCcccCccccHHHHHhCccccc-CCCeeEEEeCChhhhccCCcHHHH
Q 006958 194 K-LAREVD---PTGERTFGVLTKLDLMDKGTNALEVLEGRSYRL-QHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 194 ~-l~~~~d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
. +..... +.+.|+++|+||+|+..+.....+.+....... ...++.+++..+.++...+..+..
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 164 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIAR 164 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 1 233333 347899999999999843221111111101111 145777777776666555544443
No 74
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=1e-11 Score=135.84 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=81.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.+.|+|+|.+|+|||||+|+|+|.+..+.+. .|
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-----~~----------------------------------------- 205 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-----IA----------------------------------------- 205 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-----CC-----------------------------------------
Confidence 46799999999999999999999986422221 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+.+.+.+...+. .+...+.+|||||+.+....+ +.++.....-..++++.+|++|+ |+++..+...++.
T Consensus 206 ------gtt~~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~il-ViD~~~~~~~~~~- 274 (435)
T PRK00093 206 ------GTTRDSIDTPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLL-VIDATEGITEQDL- 274 (435)
T ss_pred ------CceEEEEEEEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEE-EEeCCCCCCHHHH-
Confidence 011111111121 133568999999987643321 11121112234568889997666 5566666655554
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+++.+...+.++++|+||+|+.+.
T Consensus 275 ~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 275 RIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCCCH
Confidence 3666666678999999999999843
No 75
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.37 E-value=5.6e-12 Score=117.89 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=58.2
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHH---hCCCCCceEE
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLARE---VDPTGERTFG 208 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~~l~~~---~d~~~~rti~ 208 (624)
...+.+|||||. ..+..+...|++++|++|+++...+ .... ..++..+.. +...+.|+++
T Consensus 44 ~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 109 (162)
T cd04157 44 NLSFTAFDMSGQ-------------GKYRGLWEHYYKNIQGIIFVIDSSD-RLRLVVVKDELELLLNHPDIKHRRVPILF 109 (162)
T ss_pred CEEEEEEECCCC-------------HhhHHHHHHHHccCCEEEEEEeCCc-HHHHHHHHHHHHHHHcCcccccCCCCEEE
Confidence 356899999993 2346677889999998887655433 2111 112222211 1234789999
Q ss_pred EeccCcccCccc--cHHHHHhCccc-ccCCCeeEEEeCChhhhccCCc
Q 006958 209 VLTKLDLMDKGT--NALEVLEGRSY-RLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 209 VltK~D~~~~~~--~~~~~l~~~~~-~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
|+||+|+.+... .....+..... .....++.+++.++.++++.+.
T Consensus 110 v~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 110 FANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred EEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 999999975432 12222221111 1111245566666666554443
No 76
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.37 E-value=3.1e-12 Score=124.70 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=89.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++|||||||++++++..|.+.- .|+.-
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~------~~t~~----------------------------------------- 34 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHY------KATIG----------------------------------------- 34 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC------CCcee-----------------------------------------
Confidence 6899999999999999999988752211 11100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~---~~ 193 (624)
.......+.+.......+.||||||- +.+..+...|+++++++|+++...+ ..+-.. +.
T Consensus 35 ----~d~~~~~v~~~~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~a~~~ilv~D~t~-~~s~~~~~~~~ 96 (201)
T cd04107 35 ----VDFALKVIEWDPNTVVRLQLWDIAGQ-------------ERFGGMTRVYYRGAVGAIIVFDVTR-PSTFEAVLKWK 96 (201)
T ss_pred ----EEEEEEEEEECCCCEEEEEEEECCCc-------------hhhhhhHHHHhCCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 00000011111112356899999993 3446778889999998887665433 211122 22
Q ss_pred HHHHH-h---CCCCCceEEEeccCcccCccc----cHHHHHhCcccccC-CCeeEEEeCChhhhccCCcHHHHHH
Q 006958 194 KLARE-V---DPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQ-HPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 194 ~l~~~-~---d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
..+.. + ...+.|+++|+||.|+.+... +..++.. ..+ .+|+.+++.++.++++.+..+....
T Consensus 97 ~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 97 ADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK----ENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred HHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH----HcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 21221 1 124679999999999974221 1222222 122 3677777777777766665555443
No 77
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.36 E-value=1.2e-11 Score=114.79 Aligned_cols=121 Identities=26% Similarity=0.314 Sum_probs=72.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|++|+||||++++|+|..+.+.+ ..|.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~-----~~~~------------------------------------------- 34 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVS-----DIAG------------------------------------------- 34 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEecc-----CCCC-------------------------------------------
Confidence 7999999999999999999998752111 1110
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
.+.+.....+. .....+++|||||+...... ........+..++.++|++++++ +++......+. ++.
T Consensus 35 ----~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~-d~~~~~~~~~~-~~~ 102 (157)
T cd04164 35 ----TTRDVIEESID-IGGIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVI-DASRGLDEEDL-EIL 102 (157)
T ss_pred ----CccceEEEEEE-eCCEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEE-ECCCCCCHHHH-HHH
Confidence 00000111111 12356899999998654321 22222234556778899766654 55543333333 233
Q ss_pred HHhCCCCCceEEEeccCcccCcc
Q 006958 197 REVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 197 ~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.. ..+.|+++|+||+|+.+..
T Consensus 103 ~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 103 EL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred Hh--hcCCCEEEEEEchhcCCcc
Confidence 33 3478999999999998654
No 78
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.36 E-value=4.3e-12 Score=119.21 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHH-HHhCCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLA-REVDPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~~l~-~~~d~~~~rti~Vlt 211 (624)
..+.+|||||.. .+..+...|++++|++++++...+. .+.+ .+...+ +.....+.|+++|+|
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 49 CMLEILDTAGTE-------------QFTAMRDLYMKNGQGFVLVYSITAQ-STFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEECCCcc-------------cchhHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 567899999942 3356677799999998886654322 1112 222222 222345789999999
Q ss_pred cCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 212 KLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
|+|+........+....-...++..|+.+.+.++.++.+.+..+
T Consensus 115 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred CCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99997543211111110011233456777777666655544433
No 79
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.36 E-value=5.6e-12 Score=118.01 Aligned_cols=100 Identities=22% Similarity=0.277 Sum_probs=57.8
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.|||||| .+.+..+...|++.+|++++++...+.+ ... .++..++... .+.|+++|+||
T Consensus 51 ~~~~i~D~~G-------------~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~l~~~~~~~~~~~-~~~p~iiv~nK 115 (162)
T cd04106 51 VRLMLWDTAG-------------QEEFDAITKAYYRGAQACILVFSTTDRE-SFEAIESWKEKVEAEC-GDIPMVLVQTK 115 (162)
T ss_pred EEEEEeeCCc-------------hHHHHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 5689999999 3445677788999999877765443321 112 2222222222 36899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeeEEEeCChhhhcc
Q 006958 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (624)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (624)
+|+........+........++.+|+.+.+..+.++++
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 116 IDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred hhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99976432111111111112334566677666555443
No 80
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.36 E-value=4.7e-12 Score=117.23 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=84.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|+++|.++|||||+++++.+..+.+.... |..+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~--t~~~------------------------------------------- 35 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKS--TIGV------------------------------------------- 35 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCC--ceee-------------------------------------------
Confidence 3799999999999999999999876322111 1000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~ 192 (624)
+.....+.+. ....++++||+||. ..+..+...+++++|++|+++...+ .-..+ .+
T Consensus 36 ------~~~~~~~~~~-~~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~ 94 (159)
T cd00154 36 ------DFKSKTIEID-GKTVKLQIWDTAGQ-------------ERFRSITPSYYRGAHGAILVYDITN-RESFENLDKW 94 (159)
T ss_pred ------eeEEEEEEEC-CEEEEEEEEecCCh-------------HHHHHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHH
Confidence 0001111111 12256899999993 3345677889999998877665433 21122 23
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhcc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (624)
+.........+.++++|+||+|+..+.. . ..++.. ....+|+.+....+.++.+
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK----ENGLLFFETSAKTGENVEE 152 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH----HcCCeEEEEecCCCCCHHH
Confidence 3333333334689999999999973222 1 222222 2345566666665555443
No 81
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.36 E-value=4.8e-12 Score=119.97 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=88.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|++||++++|||||++++++..| +.... |+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~-----~t~------------------------------------------ 33 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYK-----ATI------------------------------------------ 33 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCC-----Cce------------------------------------------
Confidence 589999999999999999999876 32211 100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~-~~~~~ 194 (624)
+.+.....+.+.+ ....+.|||||| .+.+..+...|++++|++++++...+. .+.. ..|+.
T Consensus 34 ---~~~~~~~~~~~~~-~~~~l~i~Dt~G-------------~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~ 96 (170)
T cd04108 34 ---GVDFEMERFEILG-VPFSLQLWDTAG-------------QERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLE 96 (170)
T ss_pred ---eeEEEEEEEEECC-EEEEEEEEeCCC-------------hHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 0000011111211 124689999999 344566778899999987776544331 1111 22333
Q ss_pred HH-HHhCCCCCceEEEeccCcccCccc-c-HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 195 LA-REVDPTGERTFGVLTKLDLMDKGT-N-ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 195 l~-~~~d~~~~rti~VltK~D~~~~~~-~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.. +...+...++++|.||.|+.+... . ..+........++..|+.+++.++.++.+.+..+.+..
T Consensus 97 ~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 97 DALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred HHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 22 223444456899999999865422 1 11111111112234567777776666665555444443
No 82
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.36 E-value=1.1e-11 Score=114.41 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=50.6
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
..++++|||||+...... ..........++..+|.+++++ ++.......... +.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~------~~~~~~~~~~~~~~~d~il~v~-~~~~~~~~~~~~-~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGL------GREREELARRVLERADLILFVV-DADLRADEEEEK-LLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccc------hhhHHHHHHHHHHhCCEEEEEE-eCCCCCCHHHHH-HHHHHHhcCCeEEEEEEccc
Confidence 478999999998765433 1111345667888999776655 444433333322 34444455789999999999
Q ss_pred ccCcc
Q 006958 215 LMDKG 219 (624)
Q Consensus 215 ~~~~~ 219 (624)
+....
T Consensus 116 ~~~~~ 120 (163)
T cd00880 116 LLPEE 120 (163)
T ss_pred cCChh
Confidence 98754
No 83
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.36 E-value=4.7e-12 Score=118.16 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=85.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|++|+|||||++++++..|.. ....++ ...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~-~~~~t~-~~~------------------------------------------ 37 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTI-EDS------------------------------------------ 37 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC-CcCCcc-hhe------------------------------------------
Confidence 379999999999999999999987521 111100 000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAI 193 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~-~~~~ 193 (624)
+ ...+.+.+ ....+.+|||||. +.+..+...|++.++++++++...+.. +.. ..+.
T Consensus 38 -----~---~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~ 95 (162)
T cd04138 38 -----Y---RKQVVIDG-ETCLLDILDTAGQ-------------EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYR 95 (162)
T ss_pred -----E---EEEEEECC-EEEEEEEEECCCC-------------cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00111111 1235788999993 234667788999999887765433321 111 1122
Q ss_pred H-HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 194 K-LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 194 ~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
. +.+.....+.|+++|+||+|+........+... ....++..|+.+++.++.++++.+.
T Consensus 96 ~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 96 EQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQD-LAKSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred HHHHHhcCCCCCCEEEEEECcccccceecHHHHHH-HHHHhCCeEEEecCCCCCCHHHHHH
Confidence 2 223334457899999999999764322111111 0112334577777777776655443
No 84
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.35 E-value=7e-12 Score=117.34 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=87.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|.+|||||||++++++..| +.+....+.-.. ..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~-~~---------------------------------------- 39 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSY-RK---------------------------------------- 39 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhE-EE----------------------------------------
Confidence 689999999999999999998875 322221111000 00
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~~~ 194 (624)
.+ ........+.+|||||.. .+..+...+++.++++++++...+.. + ....+..
T Consensus 40 ----------~~-~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (164)
T cd04139 40 ----------KV-VLDGEDVQLNILDTAGQE-------------DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFRE 95 (164)
T ss_pred ----------EE-EECCEEEEEEEEECCChh-------------hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 111122468999999932 33556777889999888766433211 1 1122222
Q ss_pred -HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 195 -LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 195 -l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
+.+.....+.|.++|+||+|+.+...............++.+|+.+++..+.++.+.+..+
T Consensus 96 ~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 96 QILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred HHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHH
Confidence 3333234579999999999997632111111111112234567777777777766555443
No 85
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.35 E-value=2.6e-12 Score=121.90 Aligned_cols=79 Identities=24% Similarity=0.331 Sum_probs=44.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-----cccHH---HHHHHHHhCC-----
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-----IATSD---AIKLAREVDP----- 201 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-----~~~~~---~~~l~~~~d~----- 201 (624)
..++.||||||+....... +.+ ......++..+|++++++...+.+ ....+ +...+.....
T Consensus 43 ~~~~~i~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEG--RGL----GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcC--CCc----cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678999999986432221 111 112345677899877766544331 11111 1112222221
Q ss_pred --CCCceEEEeccCcccCcc
Q 006958 202 --TGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 202 --~~~rti~VltK~D~~~~~ 219 (624)
.+.|+++|+||+|+....
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~ 136 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAE 136 (176)
T ss_pred HHhhCCeEEEEEchhcCchh
Confidence 368999999999997654
No 86
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=5.8e-12 Score=123.75 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=92.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|+|++|+|||||++++++..+-+... |+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~------~ti----------------------------------------- 35 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD------PTV----------------------------------------- 35 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC------cee-----------------------------------------
Confidence 479999999999999999999987622211 100
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~ 192 (624)
+.......+.+.......+.+|||||. +.+..+...|++++|++++++...+. -+- ..+
T Consensus 36 ----~~d~~~~~i~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~iilv~D~~~~-~Sf~~l~~~ 97 (211)
T cd04111 36 ----GVDFFSRLIEIEPGVRIKLQLWDTAGQ-------------ERFRSITRSYYRNSVGVLLVFDITNR-ESFEHVHDW 97 (211)
T ss_pred ----ceEEEEEEEEECCCCEEEEEEEeCCcc-------------hhHHHHHHHHhcCCcEEEEEEECCCH-HHHHHHHHH
Confidence 000000011111112246899999992 34466778899999988776654332 111 223
Q ss_pred HHHHH-HhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 193 IKLAR-EVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 193 ~~l~~-~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
+..+. ...+...+.++|.||+|+.+......+........++.+|+.+.+.++.++++.+..+....
T Consensus 98 ~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 98 LEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred HHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33222 23444567789999999976432111111111122346788888887777777666555443
No 87
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.35 E-value=6e-12 Score=119.99 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...+.||||||..+ +..++..|+..+|++|+++. ++.....+.. .....+...+.++++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D-~~~~~~~~~~-~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 66 EYLLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLVD-ATQGVEAQTL-ANFYLALENNLEIIPVINKID 130 (179)
T ss_pred cEEEEEEECCCChh-------------hHHHHHHHHHhcCeEEEEEE-CCCCccHhhH-HHHHHHHHcCCCEEEEEECCC
Confidence 45688999999543 35567788999998877664 4433322221 122222335789999999999
Q ss_pred ccC
Q 006958 215 LMD 217 (624)
Q Consensus 215 ~~~ 217 (624)
+.+
T Consensus 131 l~~ 133 (179)
T cd01890 131 LPS 133 (179)
T ss_pred CCc
Confidence 864
No 88
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.34 E-value=6.3e-12 Score=122.39 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=92.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||++++.+..| +... .+|.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-~~~~-~~t~------------------------------------------- 39 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSY-ITTI------------------------------------------- 39 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCc-Cccc-------------------------------------------
Confidence 357899999999999999999999875 1110 1110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
+++.....+.+.+ ....+.||||||- +.+..+...|+.+++++|+++...+. .+..
T Consensus 40 ------~~~~~~~~~~~~~-~~~~l~l~D~~G~-------------~~~~~~~~~~~~~a~~iilv~D~~~~-~s~~~~~ 98 (199)
T cd04110 40 ------GVDFKIRTVEING-ERVKLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVYDVTNG-ESFVNVK 98 (199)
T ss_pred ------cceeEEEEEEECC-EEEEEEEEeCCCc-------------hhHHHHHHHHhCCCcEEEEEEECCCH-HHHHHHH
Confidence 0000111111111 2246889999992 33466778899999988876655442 2222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.++..++... ...|.++|+||+|+.+......+.........+..|+.+++..+.++.+++..+....
T Consensus 99 ~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 99 RWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 2333333322 3578999999999875432111111111112335677888877777776666555444
No 89
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.34 E-value=7.6e-12 Score=120.84 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=65.2
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHHHHHHHHHhC---CCCCceEEEe
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSDAIKLAREVD---PTGERTFGVL 210 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~-~~~~~~l~~~~d---~~~~rti~Vl 210 (624)
..+.||||||. +.+..+...|++.+|++|+++...+.. +. ...++..+.... +.+.|+|+|+
T Consensus 47 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 47 CMLEVLDTAGQ-------------EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEEECCCc-------------hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 45899999993 234566778999999888766443321 11 123333333332 2468999999
Q ss_pred ccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHH
Q 006958 211 TKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKE 261 (624)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (624)
||+|+.+................+..|+.+++.++.++++.+..+.....+
T Consensus 114 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 114 NKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred EChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 999996532211111110011223457777777777777666655554433
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.34 E-value=1.2e-11 Score=115.32 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=85.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|.+++||||+++++++..+-+.. ...+.......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~---------------------------------------- 40 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQK---------------------------------------- 40 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEE----------------------------------------
Confidence 6899999999999999999998762211 11111110000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~ 193 (624)
.+.+.+ ....+.+||+|| .+.+..+...|+.++|++++++...+.+ ..+ .++
T Consensus 41 ----------~~~~~~-~~~~~~~~D~~g-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 95 (162)
T cd04123 41 ----------TVNIGG-KRIDLAIWDTAG-------------QERYHALGPIYYRDADGAILVYDITDAD-SFQKVKKWI 95 (162)
T ss_pred ----------EEEECC-EEEEEEEEECCc-------------hHHHHHhhHHHhccCCEEEEEEECCCHH-HHHHHHHHH
Confidence 001111 124689999999 2334566777888999877766543322 212 223
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcH
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (624)
+.++...+.+.++++|+||+|+........+.........+..++.+..++..++.+.+..
T Consensus 96 ~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~ 156 (162)
T cd04123 96 KELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLS 156 (162)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 3334444557899999999998754321111111001123345666777666665544443
No 91
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.34 E-value=2.1e-11 Score=140.55 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.|.|+++|.+|||||||+|+|+|.++ .+++..|
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-----~~v~~~~----------------------------------------- 482 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-----AVVNDLA----------------------------------------- 482 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-----cccCCCC-----------------------------------------
Confidence 568999999999999999999999875 2222222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHH-HHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENM-VRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~-~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
|.+ .+.+...+. .+..+++||||||+.+..... ...+.+..+ ...+++.+|++++ |.+++.....++.
T Consensus 483 --gtT----~d~~~~~~~-~~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvil-ViDat~~~s~~~~ 551 (712)
T PRK09518 483 --GTT----RDPVDEIVE-IDGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALF-LFDASQPISEQDL 551 (712)
T ss_pred --CCC----cCcceeEEE-ECCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEE-EEECCCCCCHHHH
Confidence 000 011111111 123568899999987533221 112223332 3567889997766 5566655555543
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+...+.++|+|+||+|+.+.
T Consensus 552 -~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 552 -KVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred -HHHHHHHHcCCCEEEEEEchhcCCh
Confidence 3556665668999999999999764
No 92
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.34 E-value=1e-11 Score=117.95 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=83.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.-+.|+++|+++||||||+++|++..+ +. ..|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~----------------------------------------- 44 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISP----------------------------------------- 44 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCC-----------------------------------------
Confidence 457899999999999999999998743 11 111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+.++....+. + +...+.+|||||. +.++.+...|++.+|++++++...+.. ......
T Consensus 45 ----t~g~~~~~~~--~---~~~~l~l~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 101 (173)
T cd04154 45 ----TLGFQIKTLE--Y---EGYKLNIWDVGGQ-------------KTLRPYWRNYFESTDALIWVVDSSDRL-RLDDCK 101 (173)
T ss_pred ----ccccceEEEE--E---CCEEEEEEECCCC-------------HHHHHHHHHHhCCCCEEEEEEECCCHH-HHHHHH
Confidence 0011111111 1 1356899999993 234667788999999888766544321 111211
Q ss_pred H----HHHHhCCCCCceEEEeccCcccCccc--cHHHHHhCcc-cccCCCeeEEEeCChhhhcc
Q 006958 194 K----LAREVDPTGERTFGVLTKLDLMDKGT--NALEVLEGRS-YRLQHPWVGIVNRSQADINK 250 (624)
Q Consensus 194 ~----l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~~~~ 250 (624)
. +.+.....+.|+++|+||+|+..... +..+.+.... ......|+.+++.++.++++
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 1 22222224689999999999975431 2223332111 11123455555555555543
No 93
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.33 E-value=9.9e-12 Score=119.78 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=92.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|+|++++|||||++++++..|-+... .|-.. .
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~---~--------------------------------------- 36 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGV---D--------------------------------------- 36 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--Cceee---E---------------------------------------
Confidence 369999999999999999999987621110 00000 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~ 192 (624)
.....+.+.+ ....+.+|||||. +....+...+++++|++|+++...+. .+-. .+
T Consensus 37 -------~~~~~~~~~~-~~~~~~i~Dt~g~-------------~~~~~~~~~~~~~~d~iilv~d~~~~-~s~~~i~~~ 94 (188)
T cd04125 37 -------FKIKTVYIEN-KIIKLQIWDTNGQ-------------ERFRSLNNSYYRGAHGYLLVYDVTDQ-ESFENLKFW 94 (188)
T ss_pred -------EEEEEEEECC-EEEEEEEEECCCc-------------HHHHhhHHHHccCCCEEEEEEECcCH-HHHHHHHHH
Confidence 0001111111 2346889999993 23456778899999988886654332 2212 23
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
+..++...+...+.++|+||.|+.+................+..|+.+.+.++.++++.+..+....
T Consensus 95 ~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 95 INEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred HHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3334444455678999999999874432101111100112234688888887777776666555443
No 94
>COG2262 HflX GTPases [General function prediction only]
Probab=99.33 E-value=1.8e-11 Score=126.18 Aligned_cols=162 Identities=20% Similarity=0.281 Sum_probs=105.7
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
...|+|++||-.|||||||+|+|+|...+-.+.-..|--|+.=+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~------------------------------------ 233 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR------------------------------------ 233 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE------------------------------------
Confidence 48999999999999999999999998864344444554442111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--H
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--S 190 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~--~ 190 (624)
+.-++...+.+-||=||++ +-|..+.+.++.... -..++|.++++|+.++.++.. +
T Consensus 234 -----------------~~l~~g~~vlLtDTVGFI~----~LP~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~ 291 (411)
T COG2262 234 -----------------IELGDGRKVLLTDTVGFIR----DLPHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLE 291 (411)
T ss_pred -----------------EEeCCCceEEEecCccCcc----cCChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHH
Confidence 3333456799999999997 445667777776543 456799776655554443322 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
....++.++.....|+|.|+||+|++.... ....+.. .. . ..+.++..++.+++.+...+..
T Consensus 292 ~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~--~~-~-~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 292 AVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELER--GS-P-NPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred HHHHHHHHcCCCCCCEEEEEecccccCchh-hhhhhhh--cC-C-CeEEEEeccCcCHHHHHHHHHH
Confidence 345577888777899999999999987643 1121111 01 1 2455666666665544444433
No 95
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=1.3e-11 Score=116.53 Aligned_cols=120 Identities=17% Similarity=0.250 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.++.|+++|.+|+|||||++++++..+.|......+....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 45 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM---------------------------------------- 45 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEE----------------------------------------
Confidence 4689999999999999999999976653221110000000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc--ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI--ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~--~~~~ 191 (624)
...+.+. .....+.+||+||. +....+...|+..+|++++++...+.+- ....
T Consensus 46 -----------~~~~~~~-~~~~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (169)
T cd04114 46 -----------IKTVEIK-GEKIKLQIWDTAGQ-------------ERFRSITQSYYRSANALILTYDITCEESFRCLPE 100 (169)
T ss_pred -----------EEEEEEC-CEEEEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 0001111 11245789999993 2335566788999998777665433211 1123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..++.+...+.+.++|+||+|+.+.
T Consensus 101 ~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 101 WLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred HHHHHHHhCCCCCeEEEEEECcccccc
Confidence 444445555667889999999998754
No 96
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.32 E-value=5.2e-12 Score=118.46 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=82.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
+|+++|++|+|||||++++.+..|.+.-.. |-..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~--t~~~-------------------------------------------- 36 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDP--TIED-------------------------------------------- 36 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCC--chhh--------------------------------------------
Confidence 699999999999999999998876321111 1000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~~~ 194 (624)
+. ...+.+.+ ....+.||||||.. .+..+...|++++|++++++...+.. + ....+..
T Consensus 37 ----~~--~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~ 96 (163)
T cd04176 37 ----FY--RKEIEVDS-SPSVLEILDTAGTE-------------QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRD 96 (163)
T ss_pred ----eE--EEEEEECC-EEEEEEEEECCCcc-------------cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 01111211 12358899999932 23456677899999888766443321 1 1122222
Q ss_pred HHHHh-CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCC
Q 006958 195 LAREV-DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (624)
Q Consensus 195 l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (624)
.+... ...+.|+++|+||+|+..................+.+|+.++++++.++++.+
T Consensus 97 ~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 97 QIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred HHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHH
Confidence 22222 33578999999999986532211100110011223456666666666555443
No 97
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.32 E-value=8.9e-12 Score=115.93 Aligned_cols=105 Identities=21% Similarity=0.265 Sum_probs=58.7
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
.++.+|||||+....... . . ..+...|+. .+|++|+++ +++.. .. ...+..++...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~~--~--~---~~~~~~~~~~~~~d~vi~v~-d~~~~-~~--~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYS--E--D---EKVARDFLLGEKPDLIVNVV-DATNL-ER--NLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCCC--h--h---HHHHHHHhcCCCCcEEEEEe-eCCcc-hh--HHHHHHHHHHcCCCEEEEEehh
Confidence 579999999986543211 0 1 234555664 899877755 44432 11 2223344444578999999999
Q ss_pred cccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCC
Q 006958 214 DLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (624)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (624)
|+.+........ ..-...++..++.+...++.++...+
T Consensus 112 Dl~~~~~~~~~~-~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 112 DEAEKRGIKIDL-DKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred hhcccccchhhH-HHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 997653211111 10011233456777777666655443
No 98
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.32 E-value=1e-11 Score=142.45 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=94.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..+|+++|++|+|||||+|+|+|.+. .. .+.|
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~v-----gn~p------------------------------------------ 34 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RV-----GNWA------------------------------------------ 34 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-cc-----CCCC------------------------------------------
Confidence 35899999999999999999999864 11 1112
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
|.+.+...-.+ ..+..++.+|||||+.+......+....+ .+...|+ .++|++++++ +++.. +..
T Consensus 35 -----GvTve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E---~i~~~~l~~~~aD~vI~Vv-Dat~l---er~ 101 (772)
T PRK09554 35 -----GVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDE---QIACHYILSGDADLLINVV-DASNL---ERN 101 (772)
T ss_pred -----CceEeeEEEEE-EcCceEEEEEECCCccccccccccccHHH---HHHHHHHhccCCCEEEEEe-cCCcc---hhh
Confidence 11111111112 22346799999999987543222122232 2345565 4789876655 55431 222
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+.+..++...+.|+++|+||+|+.++.....+. +.-...++.+++.+..+.++++++..+...
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~-~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRIDI-DALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHHH-HHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 335556666789999999999987543321111 111234556778888887777665555443
No 99
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.32 E-value=1.1e-11 Score=116.39 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=84.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++++|||||++++++..|-|... .|..+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~---------------------------------------- 39 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYK---------------------------------------- 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEE----------------------------------------
Confidence 68999999999999999999887633211 111110000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~ 193 (624)
..+.+. .....+.+||||| .+.+..+...|++++|++|+++...+ .... ..++
T Consensus 40 ---------~~~~~~-~~~~~~~i~Dt~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~ 95 (161)
T cd04124 40 ---------HNAKFE-GKTILVDFWDTAG-------------QERFQTMHASYYHKAHACILVFDVTR-KITYKNLSKWY 95 (161)
T ss_pred ---------EEEEEC-CEEEEEEEEeCCC-------------chhhhhhhHHHhCCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 000111 1224688999999 33456778889999998877665433 2221 2333
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccc-cHHHHHhCcccccCCCeeEEEeCChhhhccCCcH
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (624)
..++...+ +.|.++|+||+|+..... ...++. ......++.+++.++.++++.++.
T Consensus 96 ~~i~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 96 EELREYRP-EIPCIVVANKIDLDPSVTQKKFNFA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred HHHHHhCC-CCcEEEEEECccCchhHHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 33444332 589999999999853211 111111 112344666666666555544433
No 100
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.32 E-value=1.5e-11 Score=116.75 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=90.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++|+|||||++++.+..| |....++.. . .
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~-~---~---------------------------------------- 38 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIE-D---A---------------------------------------- 38 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCccc-c---e----------------------------------------
Confidence 699999999999999999998876 321111100 0 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~-~~~~~ 194 (624)
+ ...+.+.+ ....+.||||||- +.+..+...|+..+|++|+++...+.. +.+ .++..
T Consensus 39 ----~---~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~ 97 (172)
T cd04141 39 ----Y---KQQARIDN-EPALLDILDTAGQ-------------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKK 97 (172)
T ss_pred ----E---EEEEEECC-EEEEEEEEeCCCc-------------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHH
Confidence 0 00111211 2246899999993 345677888999999988876544321 111 22333
Q ss_pred HHHHh-CCCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 195 LAREV-DPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 195 l~~~~-d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
.+.+. ...+.|+++|.||+|+.+... +..++.+ ..+.+|+.+.+..+.++++.+..+.
T Consensus 98 ~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~----~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 98 LITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR----EFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred HHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH----HhCCEEEEEecCCCCCHHHHHHHHH
Confidence 44443 334789999999999865321 1122221 2245677777777777666555444
No 101
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=7.2e-12 Score=116.23 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=105.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
--|-.|+|+|+.|+|||-|+-++.+..| |-
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f-~e------------------------------------------------- 36 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTF-TE------------------------------------------------- 36 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCc-ch-------------------------------------------------
Confidence 3567899999999999999999999886 11
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---cccc
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIAT 189 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~---d~~~ 189 (624)
..+.+.|+......+++.+.. ..|.+|||.| ++.++.++.+|.+++|.||++. +.+. .-..
T Consensus 37 -~~~sTIGVDf~~rt~e~~gk~-iKlQIWDTAG-------------QERFrtit~syYR~ahGii~vy-DiT~~~SF~~v 100 (205)
T KOG0084|consen 37 -SYISTIGVDFKIRTVELDGKT-IKLQIWDTAG-------------QERFRTITSSYYRGAHGIIFVY-DITKQESFNNV 100 (205)
T ss_pred -hhcceeeeEEEEEEeeecceE-EEEEeeeccc-------------cHHHhhhhHhhccCCCeEEEEE-EcccHHHhhhH
Confidence 113345566666667777655 4899999999 7899999999999999988864 3332 2222
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCC-eeEEEeCChhhhccCCcHH
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~ 255 (624)
..|++-.+.......+.++|.||+|+.+...-..+..+.....++.+ |..+++.++.++++.+..+
T Consensus 101 ~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 101 KRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred HHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence 44555555555667899999999999876431111111112334445 6666666555544433333
No 102
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=2.3e-11 Score=119.03 Aligned_cols=123 Identities=24% Similarity=0.349 Sum_probs=83.6
Q ss_pred CCCeEE-EECCCCCCHHHHHHHhhCCCccccc-ccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006958 34 ALPSVA-VVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (624)
Q Consensus 34 ~lP~Iv-vvG~~ssGKSSllnal~g~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (624)
.-|..+ ++|..|+||||++|||++...-|++ -+.||+-++...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~----------------------------------- 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR----------------------------------- 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-----------------------------------
Confidence 456555 9999999999999999976665555 344555441111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS 190 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~~ 190 (624)
. +.+...|+||||||+.+...+ ....+..+..|+.+.| ++|++.++.+ ++.+.
T Consensus 82 --~-----------------~~~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d 135 (296)
T COG3596 82 --L-----------------SYDGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLD-LVLWLIKADDRALGTD 135 (296)
T ss_pred --h-----------------hccccceEEecCCCcccchhh------hHHHHHHHHHHhhhcc-EEEEeccCCCccccCC
Confidence 1 112367999999998875443 3456888899999999 5666777764 33333
Q ss_pred HHHHHHHHhC--CCCCceEEEeccCcccCcc
Q 006958 191 DAIKLAREVD--PTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 ~~~~l~~~~d--~~~~rti~VltK~D~~~~~ 219 (624)
. .+++.+- ..+.|+++|+|.+|...++
T Consensus 136 ~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 136 E--DFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred H--HHHHHHHHhccCceeEEEEehhhhhccc
Confidence 2 2344432 2248999999999988775
No 103
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.31 E-value=1.5e-11 Score=116.21 Aligned_cols=71 Identities=14% Similarity=0.288 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~----d~~~~rti~Vl 210 (624)
...+.++||||- ..++.+...|++++|++|+++...+.+ ....+..+...+ ...+.|+++|+
T Consensus 42 ~~~~~i~D~~G~-------------~~~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 42 KYEVCIFDLGGG-------------ANFRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CEEEEEEECCCc-------------HHHHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 356899999992 345677889999999888876554432 222222233322 22478999999
Q ss_pred ccCcccCcc
Q 006958 211 TKLDLMDKG 219 (624)
Q Consensus 211 tK~D~~~~~ 219 (624)
||.|+.+..
T Consensus 108 NK~Dl~~~~ 116 (167)
T cd04161 108 NKQDKKNAL 116 (167)
T ss_pred eCCCCcCCC
Confidence 999997643
No 104
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.30 E-value=2e-11 Score=114.08 Aligned_cols=112 Identities=17% Similarity=0.259 Sum_probs=69.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
+|+++|.+|+|||||++++++..+ +. ..|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~-~~------~~~t------------------------------------------- 30 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL-VT------TIPT------------------------------------------- 30 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc-cc------ccCc-------------------------------------------
Confidence 589999999999999999999875 11 1120
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
.++.... +..+....+.++||||.. .+..+...|+.++|++|+++. +........+....
T Consensus 31 --~~~~~~~----~~~~~~~~l~i~D~~G~~-------------~~~~~~~~~~~~~~~iv~v~D-~~~~~~~~~~~~~~ 90 (160)
T cd04156 31 --VGFNVEM----LQLEKHLSLTVWDVGGQE-------------KMRTVWKCYLENTDGLVYVVD-SSDEARLDESQKEL 90 (160)
T ss_pred --cCcceEE----EEeCCceEEEEEECCCCH-------------hHHHHHHHHhccCCEEEEEEE-CCcHHHHHHHHHHH
Confidence 0011001 111233579999999942 345566778999998877654 43322222222222
Q ss_pred HHh----CCCCCceEEEeccCcccCc
Q 006958 197 REV----DPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 197 ~~~----d~~~~rti~VltK~D~~~~ 218 (624)
.++ ...+.|+++|+||+|+.+.
T Consensus 91 ~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 91 KHILKNEHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred HHHHhchhhcCCCEEEEEECcccccC
Confidence 221 1247899999999998643
No 105
>PLN03118 Rab family protein; Provisional
Probab=99.30 E-value=1.9e-11 Score=120.13 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=92.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-.+|+|||++|+|||||+++|++..+ +. ...++.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~-~~~t~~-------------------------------------------- 47 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-ED-LAPTIG-------------------------------------------- 47 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCce--------------------------------------------
Confidence 35899999999999999999998765 11 110000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--H
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--D 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~--~ 191 (624)
.......+.+. .....+.||||||. +.+..+...|++++|++|+++...+.+ +..- .
T Consensus 48 ------~~~~~~~~~~~-~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~ 107 (211)
T PLN03118 48 ------VDFKIKQLTVG-GKRLKLTIWDTAGQ-------------ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDV 107 (211)
T ss_pred ------eEEEEEEEEEC-CEEEEEEEEECCCc-------------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 00111111111 12246899999993 334566788999999988866544321 1111 1
Q ss_pred HHHHHHHhC-CCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHH
Q 006958 192 AIKLAREVD-PTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKE 261 (624)
Q Consensus 192 ~~~l~~~~d-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (624)
+........ ..+.+.++|+||+|+........+.........+..|+.+.+.++.++++.+..+.....+
T Consensus 108 ~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 108 WGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 222233232 2457899999999997543211111110011223457777888777777776666655444
No 106
>PLN03110 Rab GTPase; Provisional
Probab=99.29 E-value=2.7e-11 Score=119.47 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
.-.|++||++++|||||++++++..+ +... .|+.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~-----~~t~---------------------------------------- 45 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLES-----KSTI---------------------------------------- 45 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCce----------------------------------------
Confidence 45899999999999999999999875 2111 1100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~ 192 (624)
+.......+.+.+ ....+.|||||| .+.+..+...|++.++++|+++...+.. + ....|
T Consensus 46 -----g~~~~~~~v~~~~-~~~~l~l~Dt~G-------------~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 106 (216)
T PLN03110 46 -----GVEFATRTLQVEG-KTVKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRW 106 (216)
T ss_pred -----eEEEEEEEEEECC-EEEEEEEEECCC-------------cHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHH
Confidence 0000011111211 234789999999 3445677888999999877765443321 1 11345
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+..++...+.+.++++|.||+|+........+.........+.+|+.+.+..+.++++.+..+.
T Consensus 107 ~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 107 LRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred HHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 5555555556789999999999864321111111110112345566666666666555444443
No 107
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.29 E-value=1e-11 Score=116.94 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=60.2
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhC---CCCCceEEE
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVD---PTGERTFGV 209 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~~l~~~~d---~~~~rti~V 209 (624)
..+.+|||||..+ +..+...++..++++|+++...+ ..+- ..+...++++. ..+.|+++|
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 49 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSVTS-KQSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred EEEEEEECCCCCc-------------chHHHHHHhhcCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 5689999999532 24456678889998777654333 2221 22333344432 246899999
Q ss_pred eccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcH
Q 006958 210 LTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (624)
Q Consensus 210 ltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (624)
.||+|+........+.........+.+|+.+++.++.++++.+..
T Consensus 115 ~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 115 GNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred EECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 999999753221111101001123456777887777766554443
No 108
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.29 E-value=4.1e-11 Score=113.28 Aligned_cols=150 Identities=17% Similarity=0.235 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..-+|+|+|++++|||||++++++..|.+......+. .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~-----~------------------------------------- 41 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV-----E------------------------------------- 41 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceee-----E-------------------------------------
Confidence 3568999999999999999999988763221110000 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~-~~~ 191 (624)
.....+.+ ......+.|||||| .+.+..+...|++.+|++++++...+.+ +. ...
T Consensus 42 ---------~~~~~~~~-~~~~~~l~i~D~~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (170)
T cd04116 42 ---------FLNKDLEV-DGHFVTLQIWDTAG-------------QERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSN 98 (170)
T ss_pred ---------EEEEEEEE-CCeEEEEEEEeCCC-------------hHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHH
Confidence 00001111 11224688999999 3455778888999999877655433221 11 122
Q ss_pred HHH-HHHHhC---CCCCceEEEeccCcccCcccc---HHHHHhCcccccC-CCeeEEEeCChhhhccCC
Q 006958 192 AIK-LAREVD---PTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQ-HPWVGIVNRSQADINKNV 252 (624)
Q Consensus 192 ~~~-l~~~~d---~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~ 252 (624)
+.. +.+... +.+.|+++|+||+|+...... ..++.. .++ ..|+.+++.++.++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 99 WKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred HHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCCHHHHH
Confidence 222 222221 346799999999998743221 222222 122 356666666665554433
No 109
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.29 E-value=3.4e-11 Score=112.70 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=59.9
Q ss_pred EEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 140 LIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 140 lvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+|||||..... .+..+.+ ..+++.+|++++++...+.+.....+ + ..+. .+.++++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~--------~~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~~~--~-~~~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSH--------PRWYHAL-ITTLQDVDMLIYVHGANDPESRLPAG--L-LDIG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCC--------HHHHHHH-HHHHhcCCEEEEEEeCCCcccccCHH--H-Hhcc-CCCCeEEEEEccccCccc
Confidence 69999976432 1222333 34578999877755443322111122 2 2222 367899999999986532
Q ss_pred cc-HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 220 TN-ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 220 ~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.+ +.+.+. ......+++.+++++++++.+.+..+....
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 11 222222 112224788899999888877766655443
No 110
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.29 E-value=1.3e-11 Score=116.82 Aligned_cols=143 Identities=16% Similarity=0.187 Sum_probs=81.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|++|+|||||++++++..+ |.... .|-
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~-~t~--------------------------------------------- 35 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTE-ATI--------------------------------------------- 35 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccc-cce---------------------------------------------
Confidence 5899999999999999999998775 32211 000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHH-HHHHHhhcCCCEEEEEEecCCCccccH---H
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE-NMVRSYVEKPSCIILAISPANQDIATS---D 191 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~-~~~~~yi~~~~~iiL~V~~a~~d~~~~---~ 191 (624)
+++.....+.+. .....+.+|||||- +.+. .+...|++++|++|+++...+. ...+ .
T Consensus 36 ----~~~~~~~~~~~~-~~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~ 96 (170)
T cd04115 36 ----GVDFRERTVEID-GERIKVQLWDTAGQ-------------ERFRKSMVQHYYRNVHAVVFVYDVTNM-ASFHSLPS 96 (170)
T ss_pred ----eEEEEEEEEEEC-CeEEEEEEEeCCCh-------------HHHHHhhHHHhhcCCCEEEEEEECCCH-HHHHhHHH
Confidence 000000111111 12256899999992 2223 4677889999998886655432 2222 2
Q ss_pred HHHHHHHh-CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCC
Q 006958 192 AIKLAREV-DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (624)
Q Consensus 192 ~~~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (624)
++..+... ...+.|+++|+||+|+........+...........+|+.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 97 WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 33333332 234689999999999865432111111111122346788777776
No 111
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.29 E-value=2.1e-11 Score=117.54 Aligned_cols=155 Identities=23% Similarity=0.207 Sum_probs=95.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.+-.|+|+|+.++|||||+.++.+..| +.... .| +
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~-~t--~----------------------------------------- 39 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYG-YN--M----------------------------------------- 39 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-Cc--c-----------------------------------------
Confidence 346899999999999999999998765 11100 01 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
+.......+.+.+ ....+.|||||| .+.+..+...|++++|++||++...+. .+- .
T Consensus 40 ------~~~~~~~~i~~~~-~~~~l~iwDt~G-------------~~~~~~l~~~~~~~ad~illVfD~t~~-~Sf~~~~ 98 (189)
T cd04121 40 ------GIDYKTTTILLDG-RRVKLQLWDTSG-------------QGRFCTIFRSYSRGAQGIILVYDITNR-WSFDGID 98 (189)
T ss_pred ------eeEEEEEEEEECC-EEEEEEEEeCCC-------------cHHHHHHHHHHhcCCCEEEEEEECcCH-HHHHHHH
Confidence 0000011111211 225689999999 344577888999999988876644332 222 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.|+..+....+ +.|.|+|.||.|+..... +..++.+ ..+..|+.+++.++.++++.+..+....
T Consensus 99 ~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~----~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 99 RWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAE----RNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHH----HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 34444444433 689999999999965321 1222222 2345688888888888877776665443
No 112
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.29 E-value=1.8e-11 Score=114.89 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=87.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++++|||||++++++..|.|... .|..+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~-------------------------------------------- 35 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGV-------------------------------------------- 35 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--Cceee--------------------------------------------
Confidence 58999999999999999999987732211 11111
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~ 193 (624)
......+.+.+ ....+.+|||||- +....+...|+.++|++++++...+. -+-+ .++
T Consensus 36 -----~~~~~~~~~~~-~~~~l~i~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~-~sf~~~~~~~ 95 (161)
T cd04117 36 -----DFKMKTIEVDG-IKVRIQIWDTAGQ-------------ERYQTITKQYYRRAQGIFLVYDISSE-RSYQHIMKWV 95 (161)
T ss_pred -----EEEEEEEEECC-EEEEEEEEeCCCc-------------HhHHhhHHHHhcCCcEEEEEEECCCH-HHHHHHHHHH
Confidence 00001111111 1246889999992 33456777899999988776543332 1112 233
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
..++...+...+.++|.||.|+.....-..+.........+.+|+.+.+.++.++++.+.
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 333344455688999999999865432101111100122345687777777666554443
No 113
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.29 E-value=2.9e-11 Score=117.46 Aligned_cols=121 Identities=26% Similarity=0.323 Sum_probs=69.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|.+|+|||||+|+|+|..+ |....+++... . .+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~~~---~--~t----------------------------------- 40 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTGVV---E--TT----------------------------------- 40 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccCcc---c--cc-----------------------------------
Confidence 4799999999999999999999764 32211111100 0 00
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
.... .+..++..++++|||||+...... ..+.++. ..+.+.|.+++ |.+ .++...+. .+
T Consensus 41 -------~~~~--~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~---~~~~~~d~~l~-v~~--~~~~~~d~-~~ 99 (197)
T cd04104 41 -------MKRT--PYPHPKFPNVTLWDLPGIGSTAFP-----PDDYLEE---MKFSEYDFFII-ISS--TRFSSNDV-KL 99 (197)
T ss_pred -------cCce--eeecCCCCCceEEeCCCCCcccCC-----HHHHHHH---hCccCcCEEEE-EeC--CCCCHHHH-HH
Confidence 0000 011233468999999998753221 1121121 12457786555 433 23444443 25
Q ss_pred HHHhCCCCCceEEEeccCcccCc
Q 006958 196 AREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++.+...+.++++|+||+|+..+
T Consensus 100 ~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 100 AKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHhCCCEEEEEecccchhh
Confidence 55555568899999999999643
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.28 E-value=2.9e-11 Score=112.53 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=84.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|+++||||||++++++..+ +.....++..+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~------------------------------------------ 37 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYR------------------------------------------ 37 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEE------------------------------------------
Confidence 489999999999999999998864 3332222221100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~ 193 (624)
....+ ......+.++|+||. .....+...+++.+|++++++...+.+ ... .+.
T Consensus 38 ---------~~~~~-~~~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 93 (160)
T cd00876 38 ---------KTIVV-DGETYTLDILDTAGQ-------------EEFSAMRDLYIRQGDGFILVYSITDRE-SFEEIKGYR 93 (160)
T ss_pred ---------EEEEE-CCEEEEEEEEECCCh-------------HHHHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHH
Confidence 00111 111246889999993 234566777889999888766544422 111 122
Q ss_pred HHHHHhCC-CCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCC
Q 006958 194 KLAREVDP-TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (624)
Q Consensus 194 ~l~~~~d~-~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (624)
.......+ .+.|+++|+||+|+........+.........+.+|+.+.+....++.+.+
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVF 153 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Confidence 22222222 578999999999998633211111111111223567777766665554433
No 115
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.28 E-value=2e-11 Score=117.03 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||..+ +......++..+|++++++ ++....... ...+...+...+.++++|+||+|
T Consensus 61 ~~~~~liDtpG~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~~~~-~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHED-------------FSSEVIRGLSVSDGAILVV-DANEGVQPQ-TREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHH-------------HHHHHHHHHHhcCEEEEEE-ECCCCCcHH-HHHHHHHHHHCCCCeEEEEECCC
Confidence 46799999999542 2455677888999877755 444333222 22233333336789999999999
Q ss_pred ccCc
Q 006958 215 LMDK 218 (624)
Q Consensus 215 ~~~~ 218 (624)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 116
>PLN03108 Rab family protein; Provisional
Probab=99.28 E-value=2.6e-11 Score=119.08 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=89.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
.-.|+|+|++++|||||++++++..|-|.... |-
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~--ti-------------------------------------------- 39 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TI-------------------------------------------- 39 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--Cc--------------------------------------------
Confidence 45899999999999999999999876332111 00
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~--~~~ 192 (624)
++......+.+.+. ...+.+|||||. +.+..+...|+..+|++++++...+..... ..+
T Consensus 40 -----~~~~~~~~i~~~~~-~i~l~l~Dt~G~-------------~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~ 100 (210)
T PLN03108 40 -----GVEFGARMITIDNK-PIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASW 100 (210)
T ss_pred -----cceEEEEEEEECCE-EEEEEEEeCCCc-------------HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHH
Confidence 00000011112111 135889999993 334566778899999888766554322111 123
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+..+........|+++|.||+|+..... +..++.+ ..+..|+.+.+.+..++.+.+..+.
T Consensus 101 ~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 101 LEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK----EHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred HHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 3333333445689999999999975432 1122221 2234677777777776665554433
No 117
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.28 E-value=9.6e-10 Score=123.76 Aligned_cols=485 Identities=23% Similarity=0.256 Sum_probs=339.7
Q ss_pred cceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHH
Q 006958 85 DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN 164 (624)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~ 164 (624)
+|..+.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...+++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 35566677777788999999999888888888888999999999999998899999999999999998888888877777
Q ss_pred HHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCC
Q 006958 165 MVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (624)
Q Consensus 165 ~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (624)
+-..++...+++|.....++.+..+......++..++ +.++.+.++.+.+.... .+.|+..+.+..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 8888888888888888888888888887777776655 77777777665432111 456777777777
Q ss_pred hhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 006958 245 QADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPI 324 (624)
Q Consensus 245 ~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~ 324 (624)
..++........+...+..+|..++.+.+....++...+...++..+..++....|............ .++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 77888888888788888899999998988878899999999999999999998888666555444332 22211
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCchhHhHhhhhhHHHhccCCcccCCchhhHHHHhHhccCCCCCCCCch
Q 006958 325 GVDSGAQLYTILEMCRAFERVFKEHLDGGRAGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEADGYQPHLIAPE 404 (624)
Q Consensus 325 ~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~g~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~~~G~~p~~f~pe 404 (624)
.+......|...+....+ |+++... ... +.....+....+.....++.|..|..|...
T Consensus 221 ---------~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (546)
T COG0699 221 ---------EVLAVIQTLLKRLSELVR-----GARIRLN-IIL-------FSDLEEVSDSPVLLKELASKGERPSLLSGL 278 (546)
T ss_pred ---------HHHHHHHHHHHHHHHHhc-----cchhhhh-hcc-------cchHHHhhhhhhHHHHHcccCCCccccccc
Confidence 234445555555553433 3333333 001 111112344566666677778777677777
Q ss_pred hHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006958 405 QGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLVDMES 484 (624)
Q Consensus 405 ~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~ 484 (624)
.++..++..++..+..+..+|+..+...+.++....+. ......||.+...+...+.....+........+...++.+.
T Consensus 279 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (546)
T COG0699 279 TLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEE 357 (546)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88888999998888889888888777777776333322 24568899999999999988778888888888888888888
Q ss_pred cccCH---HHhh--hhhcccccc-----------c-cC-CCCCCCCC-----------------------------C---
Q 006958 485 SYLTV---EFFR--KLSEQPERS-----------A-SD-KNASDKNA-----------------------------P--- 514 (624)
Q Consensus 485 ~yint---~~~~--~~~~~~~~~-----------~-~~-~~~~~~~~-----------------------------~--- 514 (624)
.|+++ ++.. .+.....+. . .. ........ .
T Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (546)
T COG0699 358 RYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLD 437 (546)
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccch
Confidence 88863 1111 000000000 0 00 00000000 0
Q ss_pred -CCCCCC-----CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 006958 515 -DRNAPP-----PGPQNPERFSDYHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEERLG 588 (624)
Q Consensus 515 -~~~~~~-----~~~~~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPkaI~~~lV~~~~~~L~~~L~~~L~~~~~~~~ 588 (624)
...... ........ .....+.+..++++| .++...+.|.++++++..+.+..+..........++.. ...+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 514 (546)
T COG0699 438 ALLATLGEALRRLTGLLPER-KTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLE-QLED 514 (546)
T ss_pred hhhccchHHHHHhhcccchh-hhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 000000 00000011 112235568889999 99999999999999999997777666666666666653 5677
Q ss_pred hhhCCChHHHHHHHHHHHHHHHHHHHHH
Q 006958 589 KMLDEDPQLMDRRATLAKRLELYKSARD 616 (624)
Q Consensus 589 ~ll~E~~~i~~kR~~l~~~l~~L~~A~~ 616 (624)
.+..+.+.+...|..+.+.++.+.++..
T Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 515 ELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999988865
No 118
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=3.3e-11 Score=112.86 Aligned_cols=123 Identities=22% Similarity=0.359 Sum_probs=76.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|++|||||||+|+|++..+.|..++....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~---------------------------------------------- 34 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGK---------------------------------------------- 34 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCc----------------------------------------------
Confidence 4899999999999999999965554444332111
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCC---CEEEEEEecCCCccccHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP---SCIILAISPANQDIATSDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~---~~iiL~V~~a~~d~~~~~~~ 193 (624)
+.......+ ...+++|||||+..... +.+..+.+..+...|+... +.+++ +++........ ..
T Consensus 35 -----t~~~~~~~~----~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~~~~~-~~ 100 (170)
T cd01876 35 -----TQLINFFNV----NDKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVL-LIDSRHGPTEI-DL 100 (170)
T ss_pred -----ceeEEEEEc----cCeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEE-EEEcCcCCCHh-HH
Confidence 000001111 12799999999865433 3334566777778888654 34434 54554333222 22
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.+.+.+...+.++++|+||+|++..+
T Consensus 101 ~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 101 EMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHcCCCEEEEEEchhcCChH
Confidence 34555555678999999999997654
No 119
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.27 E-value=3.5e-11 Score=113.48 Aligned_cols=114 Identities=22% Similarity=0.307 Sum_probs=71.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|+.|||||||++++.+..| |.... .| .+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~-~~-~~~~------------------------------------------ 36 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVP-RV-LPEI------------------------------------------ 36 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCC-Cc-ccce------------------------------------------
Confidence 689999999999999999999875 32211 01 1100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH----HH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS----DA 192 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~----~~ 192 (624)
.+...+. .....+.+|||||... .......++..+|++++++ +++...+.. .|
T Consensus 37 --------~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~-d~~~~~s~~~~~~~~ 93 (166)
T cd01893 37 --------TIPADVT-PERVPTTIVDTSSRPQ-------------DRANLAAEIRKANVICLVY-SVDRPSTLERIRTKW 93 (166)
T ss_pred --------Eeeeeec-CCeEEEEEEeCCCchh-------------hhHHHhhhcccCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 0011111 1234689999999432 1344566789999877755 444322222 23
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
...++...+ +.|+++|+||+|+.+..
T Consensus 94 ~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 94 LPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHHHHhCC-CCCEEEEEEchhccccc
Confidence 444555444 78999999999997643
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.27 E-value=2.4e-11 Score=114.43 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHH----hCCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLARE----VDPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~----~d~~~~rti~Vl 210 (624)
...+.+|||||.. .+..+...+++.+|++++++...+.+ .......+... ....+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQE-------------SLRSLWDKYYAECHAIIYVIDSTDRE-RFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEEEEECchHH-HHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 4679999999943 23556778899999887766543321 12222222222 223478999999
Q ss_pred ccCcccCc
Q 006958 211 TKLDLMDK 218 (624)
Q Consensus 211 tK~D~~~~ 218 (624)
||+|+...
T Consensus 115 NK~D~~~~ 122 (167)
T cd04160 115 NKQDLPDA 122 (167)
T ss_pred EccccccC
Confidence 99998654
No 121
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.27 E-value=2.3e-11 Score=114.93 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=84.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|.+||||||+++++++..+.+.- ...+....
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~-~~t~~~~~------------------------------------------- 38 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESY-DPTIEDSY------------------------------------------- 38 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccc-CCcchheE-------------------------------------------
Confidence 6899999999999999999988762211 11100000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~~~ 194 (624)
...+.+. .....+.+|||||.. .+..+...|++.++++++++...+.. + ....+..
T Consensus 39 --------~~~~~~~-~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~ 96 (168)
T cd04177 39 --------RKQVEID-GRQCDLEILDTAGTE-------------QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELRE 96 (168)
T ss_pred --------EEEEEEC-CEEEEEEEEeCCCcc-------------cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0011111 122468899999943 23567778888999887765443321 1 1122233
Q ss_pred HHHH-hCCCCCceEEEeccCcccCccccHHHHHhCcccccC-CCeeEEEeCChhhhccCCc
Q 006958 195 LARE-VDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQ-HPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 195 l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~ 253 (624)
.+.. ....+.|+++|+||.|+........+.........+ .+|+.+++.+..++++.+.
T Consensus 97 ~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~ 157 (168)
T cd04177 97 QVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFI 157 (168)
T ss_pred HHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHH
Confidence 2322 344578999999999987543211111110011122 4577777777666554333
No 122
>PTZ00369 Ras-like protein; Provisional
Probab=99.27 E-value=2.6e-11 Score=116.96 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=85.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-..|+|+|++|+|||||++++.+..| +.... .|-.. .
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~-~~~~~-~t~~~---~-------------------------------------- 41 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF-IDEYD-PTIED---S-------------------------------------- 41 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CcCcC-Cchhh---E--------------------------------------
Confidence 36899999999999999999998875 21110 00000 0
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc--ccHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI--ATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~--~~~~~ 192 (624)
+ ...+.+. .....+.+|||||..+ +..+...|++.++++|+++...+.+. ....+
T Consensus 42 ------~---~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~ 98 (189)
T PTZ00369 42 ------Y---RKQCVID-EETCLLDILDTAGQEE-------------YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASF 98 (189)
T ss_pred ------E---EEEEEEC-CEEEEEEEEeCCCCcc-------------chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHH
Confidence 0 0011111 1124578999999432 35567789999998887665443321 11222
Q ss_pred HHHHHHh-CCCCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 193 IKLAREV-DPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 193 ~~l~~~~-d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
...+... ...+.|+++|.||+|+..... . ..... ...+..|+.+++.++.++.+.+..+.
T Consensus 99 ~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~----~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 99 REQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA----KSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH----HHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 3222222 234679999999999864321 1 11111 12234566777666666655444443
No 123
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.27 E-value=5.3e-11 Score=111.31 Aligned_cols=147 Identities=15% Similarity=0.197 Sum_probs=83.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|.+|||||||+++|++..+.+......
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------------------------------------------------ 33 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATI------------------------------------------------ 33 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcc------------------------------------------------
Confidence 68999999999999999999987522111100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~---~~ 193 (624)
+.+.....+.+ +.....+.+|||||.. ....+...+++.+|++++++.. +...+.+. ++
T Consensus 34 ---~~~~~~~~~~~-~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~ 95 (161)
T cd01863 34 ---GVDFKVKTLTV-DGKKVKLAIWDTAGQE-------------RFRTLTSSYYRGAQGVILVYDV-TRRDTFTNLETWL 95 (161)
T ss_pred ---cceEEEEEEEE-CCEEEEEEEEECCCch-------------hhhhhhHHHhCCCCEEEEEEEC-CCHHHHHhHHHHH
Confidence 00011111111 1223568999999932 2355567788999987776654 32222122 23
Q ss_pred HHHHH-hCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhcc
Q 006958 194 KLARE-VDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (624)
Q Consensus 194 ~l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (624)
..+.. ....+.+.++|+||+|+........+.... ....+..|+.+....+.++.+
T Consensus 96 ~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 96 NELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF-ARKHNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred HHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH-HHHcCCEEEEEecCCCCCHHH
Confidence 32333 245578899999999997443222222111 112344566666665555443
No 124
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.26 E-value=6.7e-11 Score=118.51 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
.-.+|+|+|.+|+|||||+|+|+|....+.+.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 567999999999999999999999876444322 2333321111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCC-cccc
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ-DIAT 189 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~-d~~~ 189 (624)
. ..+...+++|||||+...... ....+.+.+.+..|++ ..++ ||+|...+. ....
T Consensus 74 -----------------~-~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~idv-IL~V~rlD~~r~~~ 131 (249)
T cd01853 74 -----------------G-TVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPDV-VLYVDRLDMYRRDY 131 (249)
T ss_pred -----------------E-EECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCCE-EEEEEcCCCCCCCH
Confidence 0 112357999999999865321 1134445566777886 5665 555654443 2222
Q ss_pred H--HHHHHHHHhCCC--CCceEEEeccCcccCcc
Q 006958 190 S--DAIKLAREVDPT--GERTFGVLTKLDLMDKG 219 (624)
Q Consensus 190 ~--~~~~l~~~~d~~--~~rti~VltK~D~~~~~ 219 (624)
. ..++.+++.-.. -.++++|+||+|...+.
T Consensus 132 ~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 132 LDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 2 233333332111 25799999999998654
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.26 E-value=7.1e-11 Score=109.39 Aligned_cols=113 Identities=22% Similarity=0.284 Sum_probs=69.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
+|+++|++|||||||+++|.|..| +... .+|..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~--------------------------------------------- 33 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF-SEDT-IPTVG--------------------------------------------- 33 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC-CcCc-cCCCC---------------------------------------------
Confidence 489999999999999999999876 2111 11111
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
+.. .. +.. +...+.+|||||. ..++.+...|+..+|++++++ +++............
T Consensus 34 ----~~~--~~--~~~-~~~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~-d~~~~~~~~~~~~~~ 90 (159)
T cd04159 34 ----FNM--RK--VTK-GNVTLKVWDLGGQ-------------PRFRSMWERYCRGVNAIVYVV-DAADRTALEAAKNEL 90 (159)
T ss_pred ----cce--EE--EEE-CCEEEEEEECCCC-------------HhHHHHHHHHHhcCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 000 01 111 1256899999993 234667788999999877755 444321111111111
Q ss_pred HHh----CCCCCceEEEeccCcccCcc
Q 006958 197 REV----DPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 197 ~~~----d~~~~rti~VltK~D~~~~~ 219 (624)
..+ ...+.|.++|+||+|+.+..
T Consensus 91 ~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 91 HDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred HHHHcChhhcCCCEEEEEeCccccCCc
Confidence 211 22467999999999987643
No 126
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.26 E-value=3.3e-11 Score=112.55 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc--cHHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA--TSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~--~~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.+|||||.. .+..+...|++.+|++|+++...+.. +. ......+.+.....+.|+++|+||
T Consensus 43 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 43 LKFQVWDLGGQT-------------SIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 568999999943 23667788999999887766433321 11 111222223222246899999999
Q ss_pred CcccCc
Q 006958 213 LDLMDK 218 (624)
Q Consensus 213 ~D~~~~ 218 (624)
+|+.+.
T Consensus 110 ~Dl~~~ 115 (158)
T cd04151 110 QDMPGA 115 (158)
T ss_pred CCCCCC
Confidence 998754
No 127
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.25 E-value=2.7e-11 Score=114.68 Aligned_cols=113 Identities=14% Similarity=0.184 Sum_probs=61.9
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~----d~~~~rti~Vl 210 (624)
...+.+|||||... ...+...|++.+|++|+++...+.. .-.++..+...+ ...+.|+++|+
T Consensus 42 ~~~i~l~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~s~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKHK-------------LRPLWKHYYLNTQAVVFVVDSSHRD-RVSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCChh-------------cchHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 35789999999432 2456778899999988766543321 112222222222 12347899999
Q ss_pred ccCcccCccc--cHHHHHhCcccccCC--CeeEEEeCChhhhccCCcHHHHHHHH
Q 006958 211 TKLDLMDKGT--NALEVLEGRSYRLQH--PWVGIVNRSQADINKNVDMIAARRKE 261 (624)
Q Consensus 211 tK~D~~~~~~--~~~~~l~~~~~~l~~--g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (624)
||.|+.+..+ +..+.+.......+. .+..+++.++.++++.+.++.....+
T Consensus 108 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 108 NKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred eCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 9999965422 122333211111111 23445666666676666655444433
No 128
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.25 E-value=7.9e-11 Score=119.61 Aligned_cols=140 Identities=17% Similarity=0.278 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccc-cccccccEEEEEEeCCCCCcceee
Q 006958 11 INKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEF 89 (624)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~ 89 (624)
..+|++.+..+.+.+ .+..+|+|+|.+|+||||++|+|+|......+. ..+|..|+...
T Consensus 21 q~~l~~~l~~l~~~~-------~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~------------- 80 (313)
T TIGR00991 21 QTKLLELLGKLKEED-------VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS------------- 80 (313)
T ss_pred HHHHHHHHHhccccc-------ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE-------------
Confidence 455666666665543 477899999999999999999999987522221 11222221111
Q ss_pred ccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHh
Q 006958 90 LHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSY 169 (624)
Q Consensus 90 ~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~y 169 (624)
. ..+...+++|||||+.... ...+...+.+..|
T Consensus 81 ----------------------------------------~-~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ik~~ 113 (313)
T TIGR00991 81 ----------------------------------------R-TRAGFTLNIIDTPGLIEGG------YINDQAVNIIKRF 113 (313)
T ss_pred ----------------------------------------E-EECCeEEEEEECCCCCchH------HHHHHHHHHHHHH
Confidence 0 1123679999999998642 2344455666666
Q ss_pred hc--CCCEEEEEEecCCC-ccc--cHHHHHHHHHhC--CCCCceEEEeccCcccCc
Q 006958 170 VE--KPSCIILAISPANQ-DIA--TSDAIKLAREVD--PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 170 i~--~~~~iiL~V~~a~~-d~~--~~~~~~l~~~~d--~~~~rti~VltK~D~~~~ 218 (624)
+. .+|++++ |...+. ... ....++.++.+- ..-.++|+|+|+.|..++
T Consensus 114 l~~~g~DvVLy-V~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTIDVLLY-VDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCCEEEE-EeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 64 5786555 543322 122 233444444432 223689999999998854
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.25 E-value=8.8e-11 Score=112.83 Aligned_cols=113 Identities=15% Similarity=0.239 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-+.|+++|.+||||||++++++|..+-. ..+|..|+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~-------------------------------------- 54 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSE-------------------------------------- 54 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceE--------------------------------------
Confidence 45799999999999999999999976510 1122222110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.+.+ +...+.++||||.. ..+.+...|++++|++|+++...+.+ ......
T Consensus 55 -------------~~~~---~~~~~~~~D~~G~~-------------~~~~~~~~~~~~ad~ii~vvD~~~~~-~~~~~~ 104 (184)
T smart00178 55 -------------ELAI---GNIKFTTFDLGGHQ-------------QARRLWKDYFPEVNGIVYLVDAYDKE-RFAESK 104 (184)
T ss_pred -------------EEEE---CCEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECCcHH-HHHHHH
Confidence 0111 23568999999943 23566778999999988866554321 111111
Q ss_pred H----HHHHhCCCCCceEEEeccCcccC
Q 006958 194 K----LAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 194 ~----l~~~~d~~~~rti~VltK~D~~~ 217 (624)
. +.+...-.+.|+++|+||+|+..
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 1 22211224789999999999854
No 130
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.7e-11 Score=114.19 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=106.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
..+-.|++||+++||||+++-++....|- +.+.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~-------~~~~---------------------------------------- 42 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFN-------TSFI---------------------------------------- 42 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCc-------CCcc----------------------------------------
Confidence 46789999999999999999999988771 1111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cc-ccH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DI-ATS 190 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~-~~~ 190 (624)
.+.|+....-.+.+.+ ....|.+|||.| ++.++.++.+|++.++.++|++.-.+. .+ ...
T Consensus 43 ----sTiGIDFk~kti~l~g-~~i~lQiWDtaG-------------Qerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~ 104 (207)
T KOG0078|consen 43 ----STIGIDFKIKTIELDG-KKIKLQIWDTAG-------------QERFRTITTAYYRGAMGILLVYDITNEKSFENIR 104 (207)
T ss_pred ----ceEEEEEEEEEEEeCC-eEEEEEEEEccc-------------chhHHHHHHHHHhhcCeeEEEEEccchHHHHHHH
Confidence 1112222223333333 335689999999 888999999999999998887654442 12 224
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
.|++.+++..+.+.+.++|.||+|+.++..-..+.-+.-...++..|+.+++.++.++.+.+..+.+
T Consensus 105 ~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 105 NWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred HHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHH
Confidence 5777777777779999999999999875431111111112334566888888877776654444433
No 131
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.25 E-value=6.2e-11 Score=113.17 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=87.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|.+|+|||||++++++..+ +.....++..... .
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~-~---------------------------------------- 40 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFS-K---------------------------------------- 40 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEE-E----------------------------------------
Confidence 689999999999999999998875 3221111111100 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH----
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---- 192 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~---- 192 (624)
.+.+ ......+.+|||||.. .+..+...+...+++++++++..+. ...+..
T Consensus 41 ----------~~~~-~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~ 95 (180)
T cd04137 41 ----------IIRY-KGQDYHLEIVDTAGQD-------------EYSILPQKYSIGIHGYILVYSVTSR-KSFEVVKVIY 95 (180)
T ss_pred ----------EEEE-CCEEEEEEEEECCChH-------------hhHHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHH
Confidence 0001 1112467899999932 2344555788889987776644432 111222
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
..+++.....+.|.|+|+||+|+..................+..++.+++.++.++.+.+..+....
T Consensus 96 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 96 DKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred HHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2233433445789999999999865332111111110112234567777777666666555554443
No 132
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.25 E-value=3.4e-11 Score=116.48 Aligned_cols=108 Identities=14% Similarity=0.190 Sum_probs=60.2
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.+|||||.. .+..+...|+.++|++++++. .+..-+- ..++..++...+ +.|+++|+||
T Consensus 50 ~~l~i~D~~G~~-------------~~~~~~~~~~~~~d~iilv~d-~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK 114 (193)
T cd04118 50 VTLGIWDTAGSE-------------RYEAMSRIYYRGAKAAIVCYD-LTDSSSFERAKFWVKELQNLEE-HCKIYLCGTK 114 (193)
T ss_pred EEEEEEECCCch-------------hhhhhhHhhcCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEc
Confidence 357899999932 235556678889998777654 4322111 123333343332 6899999999
Q ss_pred CcccCccccH----HHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHH
Q 006958 213 LDLMDKGTNA----LEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 213 ~D~~~~~~~~----~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
+|+.+..... ...+.......+..|+.+.+.+..++..++..+...
T Consensus 115 ~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 115 SDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred ccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9986532100 000110011223456677777766666655555443
No 133
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.25 E-value=2.6e-11 Score=119.85 Aligned_cols=157 Identities=14% Similarity=0.188 Sum_probs=93.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|++||++|+|||||+++++...| +.... |
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~-----~----------------------------------------- 44 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYE-----P----------------------------------------- 44 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC-CCccC-----C-----------------------------------------
Confidence 345899999999999999999887765 21110 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
+.++....+.+.+.+ ....+.+|||||. +.+..+...|++.++++|+++...+. .+-.
T Consensus 45 ----tig~~~~~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilvfD~~~~-~s~~~i~ 105 (219)
T PLN03071 45 ----TIGVEVHPLDFFTNC-GKIRFYCWDTAGQ-------------EKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVP 105 (219)
T ss_pred ----ccceeEEEEEEEECC-eEEEEEEEECCCc-------------hhhhhhhHHHcccccEEEEEEeCCCH-HHHHHHH
Confidence 011111111221111 2357899999993 33456777899999988776654432 2222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.|+..++... .+.++++|.||+|+.+.......+ .- ....+..|+.+++.++.++.+.+..+....
T Consensus 106 ~w~~~i~~~~-~~~piilvgNK~Dl~~~~v~~~~~-~~-~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 106 TWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV-TF-HRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred HHHHHHHHhC-CCCcEEEEEEchhhhhccCCHHHH-HH-HHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 3333344443 368999999999986432211111 10 112345678888887777777666555444
No 134
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.25 E-value=7.5e-11 Score=114.28 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=47.1
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...+.||||||.. .+..++..|++.+|++++++. +..+...+. ..+.+.+...+.|.++|+||+|
T Consensus 64 ~~~~~l~DtpG~~-------------~~~~~~~~~~~~~d~~ilV~d-~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHA-------------DFGGEVERVLSMVDGVLLLVD-ASEGPMPQT-RFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcH-------------HHHHHHHHHHHhcCEEEEEEE-CCCCccHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 4679999999943 346677889999998777554 443332222 2233444445789999999999
Q ss_pred ccCc
Q 006958 215 LMDK 218 (624)
Q Consensus 215 ~~~~ 218 (624)
+...
T Consensus 129 l~~~ 132 (194)
T cd01891 129 RPDA 132 (194)
T ss_pred CCCC
Confidence 9754
No 135
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.8e-10 Score=122.05 Aligned_cols=183 Identities=19% Similarity=0.256 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeec
Q 006958 11 INKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFL 90 (624)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~ 90 (624)
-++|..+...+.+ .--.|++.|+.|+||||++||++..++||.|.|+||.|-.++. .+++.+.+...-
T Consensus 95 ~~~l~~i~~~l~r----------~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve--gadG~e~vl~~~ 162 (749)
T KOG0448|consen 95 EDKLDAIDEVLAR----------RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE--GADGAEAVLATE 162 (749)
T ss_pred HHHHHHHHHHHhh----------cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec--ccCCcceeeccC
Confidence 3455555555543 3458999999999999999999999999999999999998887 443333333222
Q ss_pred cCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCC------CCcEEEeCCCCccccCCCCCccHHHHHHH
Q 006958 91 HAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNV------VNLTLIDLPGLTKVAVEGQPESIVEDIEN 164 (624)
Q Consensus 91 ~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~------~~ltlvDtPGi~~~~~~~~~~~~~~~i~~ 164 (624)
+.+ .-.|...+...+....... . ....--+.|+.|+. -++.++|.||+...+.. ..
T Consensus 163 ~s~--ek~d~~ti~~~~haL~~~~-----~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~----------ts 224 (749)
T KOG0448|consen 163 GSE--EKIDMKTINQLAHALKPDK-----D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL----------TS 224 (749)
T ss_pred CCc--ccccHHHHhHHHHhcCccc-----c-cCcceEEEEEecCccchhhhccceeccCCCCCCchhh----------hH
Confidence 211 1122222221111110000 0 11233456666665 38999999998764433 67
Q ss_pred HHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHH
Q 006958 165 MVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEV 225 (624)
Q Consensus 165 ~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~ 225 (624)
.+.++..++|.+|+|+ .+...++. .+.++.+.+......++++.||+|......++.+.
T Consensus 225 wid~~cldaDVfVlV~-NaEntlt~-sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~ 283 (749)
T KOG0448|consen 225 WIDSFCLDADVFVLVV-NAENTLTL-SEKQFFHKVSEEKPNIFILNNKWDASASEPECKED 283 (749)
T ss_pred HHHHHhhcCCeEEEEe-cCccHhHH-HHHHHHHHhhccCCcEEEEechhhhhcccHHHHHH
Confidence 7889999999877755 44433433 33446666665545566777899998776665443
No 136
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.24 E-value=4.3e-11 Score=114.80 Aligned_cols=114 Identities=21% Similarity=0.281 Sum_probs=70.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|+.++|||||++++++..| +... ..|-..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~-~~T~g~-------------------------------------------- 35 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDY-IQTLGV-------------------------------------------- 35 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCC-CCccce--------------------------------------------
Confidence 689999999999999999998876 2111 111100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~ 193 (624)
......+.+.+ ....+.+|||+| .+.+..+...|++++|++++++...+. .+-. .|+
T Consensus 36 -----~~~~~~i~~~~-~~~~l~iwDt~G-------------~~~~~~~~~~~~~~a~~iilv~D~t~~-~s~~~i~~~~ 95 (182)
T cd04128 36 -----NFMEKTISIRG-TEITFSIWDLGG-------------QREFINMLPLVCNDAVAILFMFDLTRK-STLNSIKEWY 95 (182)
T ss_pred -----EEEEEEEEECC-EEEEEEEEeCCC-------------chhHHHhhHHHCcCCCEEEEEEECcCH-HHHHHHHHHH
Confidence 00001111211 125689999999 334466777899999988776654432 1212 344
Q ss_pred HHHHHhCCCCCceEEEeccCcccC
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
..++...+...+ |+|.||+|+..
T Consensus 96 ~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 96 RQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred HHHHHhCCCCCE-EEEEEchhccc
Confidence 445555454455 78999999963
No 137
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.24 E-value=4.4e-11 Score=113.17 Aligned_cols=114 Identities=16% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+++|.+|||||||++++.+..+.. -.|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-------~~~t---------------------------------------- 40 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPT---------------------------------------- 40 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-------ccCC----------------------------------------
Confidence 34689999999999999999998765511 1120
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.++... . +.. ....+.+|||||. +.++.+...|++++|++|+++...+. ..-..+.
T Consensus 41 -----~g~~~~--~--~~~-~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~a~~ii~v~D~t~~-~s~~~~~ 96 (168)
T cd04149 41 -----VGFNVE--T--VTY-KNVKFNVWDVGGQ-------------DKIRPLWRHYYTGTQGLIFVVDSADR-DRIDEAR 96 (168)
T ss_pred -----cccceE--E--EEE-CCEEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEEeCCch-hhHHHHH
Confidence 001000 0 111 2356899999993 23466677899999988886654432 2222232
Q ss_pred HHHHHh-C---CCCCceEEEeccCcccCc
Q 006958 194 KLAREV-D---PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (624)
+...++ . ..+.|.++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 125 (168)
T cd04149 97 QELHRIINDREMRDALLLVFANKQDLPDA 125 (168)
T ss_pred HHHHHHhcCHhhcCCcEEEEEECcCCccC
Confidence 333222 1 235799999999998653
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.24 E-value=7.6e-11 Score=107.95 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=50.6
Q ss_pred EEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 139 TLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 139 tlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+|||||.... ....+..+. .+++++|++|+++ +++....... ..+.... +.|.++|+||+|+.+.
T Consensus 38 ~~iDt~G~~~~--------~~~~~~~~~-~~~~~ad~vilv~-d~~~~~s~~~-~~~~~~~---~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 38 GAIDTPGEYVE--------NRRLYSALI-VTAADADVIALVQ-SATDPESRFP-PGFASIF---VKPVIGLVTKIDLAEA 103 (142)
T ss_pred eeecCchhhhh--------hHHHHHHHH-HHhhcCCEEEEEe-cCCCCCcCCC-hhHHHhc---cCCeEEEEEeeccCCc
Confidence 68999996311 123344444 3578999877755 4443222211 1222222 3599999999998753
Q ss_pred cccH---HHHHhCcccccC-CCeeEEEeCChhhhcc
Q 006958 219 GTNA---LEVLEGRSYRLQ-HPWVGIVNRSQADINK 250 (624)
Q Consensus 219 ~~~~---~~~l~~~~~~l~-~g~~~v~~~s~~~~~~ 250 (624)
.... .+..+ ..+ .+++.+++.++.++++
T Consensus 104 ~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 104 DVDIERAKELLE----TAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred ccCHHHHHHHHH----HcCCCcEEEEecCCCCCHHH
Confidence 2211 12222 112 2566677766665543
No 139
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.24 E-value=4.3e-11 Score=116.41 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=60.7
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH---HHHHHH-hCCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---IKLARE-VDPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~---~~l~~~-~d~~~~rti~Vlt 211 (624)
..+.||||||... +..+...|+..+|++|+++. ++........ ...+.. ....+.|+|+|+|
T Consensus 47 ~~l~i~D~~G~~~-------------~~~~~~~~~~~ad~vilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYS-------------FPAMRKLSIQNSDAFALVYA-VDDPESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchh-------------hhHHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 4688999999432 24456678899998877664 4332222222 222222 2335789999999
Q ss_pred cCcccCcccc--HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHH
Q 006958 212 KLDLMDKGTN--ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 212 K~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
|+|+...... .....+........+|+.+.+.++.++.+.+..+...
T Consensus 113 K~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 113 KADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred ccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 9998753211 1111110011223456666666666666555554443
No 140
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.23 E-value=1e-10 Score=112.83 Aligned_cols=113 Identities=17% Similarity=0.275 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-++|+++|++|||||||+++|++..+. ...+|..|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~--------------------------------------- 55 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTS--------------------------------------- 55 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcce---------------------------------------
Confidence 5689999999999999999999987641 1122322211
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
..+.+ +...+.++||||. ...+.+...|++.+|++++++...+... -....
T Consensus 56 ------------~~i~~---~~~~~~l~D~~G~-------------~~~~~~~~~~~~~ad~iilV~D~~~~~s-~~~~~ 106 (190)
T cd00879 56 ------------EELTI---GNIKFKTFDLGGH-------------EQARRLWKDYFPEVDGIVFLVDAADPER-FQESK 106 (190)
T ss_pred ------------EEEEE---CCEEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEEECCcHHH-HHHHH
Confidence 01111 1246889999993 2235667789999998877665443211 11111
Q ss_pred H----HHHHhCCCCCceEEEeccCcccC
Q 006958 194 K----LAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 194 ~----l~~~~d~~~~rti~VltK~D~~~ 217 (624)
. +.+.....+.|+++|+||+|+..
T Consensus 107 ~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 107 EELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 1 22222234689999999999864
No 141
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.23 E-value=6.5e-11 Score=110.39 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=45.9
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH----HHHHHhCCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI----KLAREVDPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~----~l~~~~d~~~~rti~Vl 210 (624)
...+.+|||||.. ....+...++..+|++++++...+.+ .-..+. .+.+.....+.|+++|+
T Consensus 42 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~ 107 (158)
T cd00878 42 NVSFTVWDVGGQD-------------KIRPLWKHYYENTNGIIFVVDSSDRE-RIEEAKEELHKLLNEEELKGVPLLIFA 107 (158)
T ss_pred CEEEEEEECCCCh-------------hhHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCcEEEEe
Confidence 3579999999933 23556778889999887765554421 111121 22232334578999999
Q ss_pred ccCcccCcc
Q 006958 211 TKLDLMDKG 219 (624)
Q Consensus 211 tK~D~~~~~ 219 (624)
||+|+....
T Consensus 108 nK~D~~~~~ 116 (158)
T cd00878 108 NKQDLPGAL 116 (158)
T ss_pred eccCCcccc
Confidence 999987643
No 142
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.22 E-value=1.4e-10 Score=114.83 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=61.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc-CCCEEEEEEecCCCcccc---HHHHHHHHHhC-CCCCceEEEe
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-KPSCIILAISPANQDIAT---SDAIKLAREVD-PTGERTFGVL 210 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~-~~~~iiL~V~~a~~d~~~---~~~~~l~~~~d-~~~~rti~Vl 210 (624)
..+.+|||||.. .. +...++. ++|++++++...+. .+- ..++..+.... ..+.|+|+|.
T Consensus 50 ~~l~i~Dt~G~~------------~~---~~~~~~~~~ad~iilV~d~td~-~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 50 STLVVIDHWEQE------------MW---TEDSCMQYQGDAFVVVYSVTDR-SSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred EEEEEEeCCCcc------------hH---HHhHHhhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 568999999943 11 1223445 89987776544332 122 22333333332 2468999999
Q ss_pred ccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHH
Q 006958 211 TKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRK 260 (624)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (624)
||+|+........+.........+.+|+.+++..+.++++.+..+.....
T Consensus 114 NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 114 NKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99998754321111111111122456788888888888777766665544
No 143
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.22 E-value=3.1e-11 Score=118.62 Aligned_cols=126 Identities=25% Similarity=0.398 Sum_probs=73.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+|+|+|..||||||++|+|+|.+.++.+.+ .||..+.... .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~-----------------------------------~-- 44 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS-----------------------------------G-- 44 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE-----------------------------------E--
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee-----------------------------------e--
Confidence 699999999999999999999998777632 4554442111 0
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--H
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--A 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~--~ 192 (624)
..+...+++|||||+...... ++++.+.+...+......+++++| |++.+ .+...+ .
T Consensus 45 -----------------~~~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~ll-Vi~~~-r~t~~~~~~ 103 (212)
T PF04548_consen 45 -----------------EVDGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLL-VIPLG-RFTEEDREV 103 (212)
T ss_dssp -----------------EETTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEE-EEETT-B-SHHHHHH
T ss_pred -----------------eecceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEE-EEecC-cchHHHHHH
Confidence 112267999999999765432 222333333333333456887665 56666 455433 3
Q ss_pred HHHHHHh-CC-CCCceEEEeccCcccCccc
Q 006958 193 IKLAREV-DP-TGERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 193 ~~l~~~~-d~-~~~rti~VltK~D~~~~~~ 220 (624)
++.+..+ .+ .-..+|+|+|..|......
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred HHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 4444443 22 2468999999999887654
No 144
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.21 E-value=7.5e-11 Score=112.21 Aligned_cols=113 Identities=15% Similarity=0.206 Sum_probs=69.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-.+|+++|.+++|||||+++|++..+.+. .+|-.+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~---~~t~~~------------------------------------------ 49 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT---SPTIGS------------------------------------------ 49 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc---CCcccc------------------------------------------
Confidence 35899999999999999999998765211 011000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
. ...+.+ +...+.++||||.. .+..+...|++.+|++|+++...+.+ .-.....
T Consensus 50 -------~--~~~~~~---~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~vi~V~D~s~~~-~~~~~~~ 103 (174)
T cd04153 50 -------N--VEEIVY---KNIRFLMWDIGGQE-------------SLRSSWNTYYTNTDAVILVIDSTDRE-RLPLTKE 103 (174)
T ss_pred -------c--eEEEEE---CCeEEEEEECCCCH-------------HHHHHHHHHhhcCCEEEEEEECCCHH-HHHHHHH
Confidence 0 001111 23568999999942 34556678889999888766543321 1111111
Q ss_pred ----HHHHhCCCCCceEEEeccCcccCc
Q 006958 195 ----LAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 195 ----l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+.+.....+.|+++|+||+|+...
T Consensus 104 ~l~~~~~~~~~~~~p~viv~NK~Dl~~~ 131 (174)
T cd04153 104 ELYKMLAHEDLRKAVLLVLANKQDLKGA 131 (174)
T ss_pred HHHHHHhchhhcCCCEEEEEECCCCCCC
Confidence 222222235899999999998653
No 145
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.21 E-value=7.3e-11 Score=111.37 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=62.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.+|||||... ...+...|+..+|++|+++. .+...+-+ .++..++...+ +.|+++|.||
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEK-------------FGGLRDGYYIGGQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChh-------------hccccHHHhcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 5689999999432 23344567889998887654 44322222 23333444433 6899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
+|+........ ... ........|+.+++.++.++++.+..+....
T Consensus 114 ~Dl~~~~~~~~-~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 114 VDIKDRKVKAK-QIT-FHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred hhcccccCCHH-HHH-HHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 99974332111 111 0112234578888887777766666555443
No 146
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.21 E-value=1.1e-10 Score=112.12 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=85.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++++|||||++++.+..| +... .|+... .|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~-----~~t~~~--------~~------------------------------ 37 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEY-----VPTVFE--------NY------------------------------ 37 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCC-----CCeeee--------ee------------------------------
Confidence 699999999999999999999875 3221 121110 00
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH----H
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD----A 192 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~----~ 192 (624)
...+...+.....+.||||||. +.+..+...|++.+|++|+++...+ ..+-.. +
T Consensus 38 --------~~~i~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~ii~v~d~~~-~~s~~~~~~~~ 95 (187)
T cd04132 38 --------VTNIQGPNGKIIELALWDTAGQ-------------EEYDRLRPLSYPDVDVLLICYAVDN-PTSLDNVEDKW 95 (187)
T ss_pred --------EEEEEecCCcEEEEEEEECCCc-------------hhHHHHHHHhCCCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 0001111112346889999992 2345566678999998877654433 211111 2
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcccc--H--HHHHhCcccccCC-CeeEEEeCChhhhccCCcHHHHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTN--A--LEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~--~--~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
+...+... .+.|.|+|.||.|+.+.... . ...........+. .|+.+++.++.++.+.+..+....
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 96 FPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred HHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 22233333 36899999999998754210 0 1111100112223 556666666666665555444433
No 147
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.21 E-value=1.4e-10 Score=109.22 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=70.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
||+++|+++||||||++++++..+ +... .| |
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~-----~p-------t------------------------------------ 31 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESV-----VP-------T------------------------------------ 31 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccc-----cc-------c------------------------------------
Confidence 689999999999999999998764 2111 11 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
.++. .+ .+.. ....+.+|||||-. .++.+...|++++|++|+++...+. .....+..+.
T Consensus 32 --~g~~--~~--~i~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~D~t~~-~s~~~~~~~l 90 (164)
T cd04162 32 --TGFN--SV--AIPT-QDAIMELLEIGGSQ-------------NLRKYWKRYLSGSQGLIFVVDSADS-ERLPLARQEL 90 (164)
T ss_pred --CCcc--eE--EEee-CCeEEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHH
Confidence 0111 11 1222 23578999999932 2356677899999998876654432 2112222222
Q ss_pred HHh--CCCCCceEEEeccCcccCc
Q 006958 197 REV--DPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 197 ~~~--d~~~~rti~VltK~D~~~~ 218 (624)
..+ ...+.|+++|.||.|+...
T Consensus 91 ~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 91 HQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHhCCCCCcEEEEEeCcCCcCC
Confidence 322 1257899999999998654
No 148
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.21 E-value=3e-11 Score=114.07 Aligned_cols=116 Identities=23% Similarity=0.275 Sum_probs=68.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|.+|||||||+++|++..+ +... .|+......
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~-~~~~-----~~~~~~~~~------------------------------------- 38 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF-PTEY-----VPTVFDNYS------------------------------------- 38 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCC-----CCceeeeeE-------------------------------------
Confidence 689999999999999999999876 2111 121111000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~ 193 (624)
..+.+ ......+.+|||||.... ..+...+++.+|++++++...+..-.. ..++
T Consensus 39 ---------~~~~~-~~~~~~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (171)
T cd00157 39 ---------ATVTV-DGKQVNLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWI 95 (171)
T ss_pred ---------EEEEE-CCEEEEEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00001 111246899999995432 223334668899877766544321111 1223
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.......+ +.|+++|+||+|+.+..
T Consensus 96 ~~~~~~~~-~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 96 PEIRHYCP-NVPIILVGTKIDLRDDE 120 (171)
T ss_pred HHHHhhCC-CCCEEEEEccHHhhhch
Confidence 22333333 69999999999998654
No 149
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.20 E-value=7e-11 Score=112.58 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=71.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|||+.++|||||+.++.+..| |... .|+...
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~-----~pt~~~---------------------------------------- 36 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEY-----VPTVFD---------------------------------------- 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCC-----CCceee----------------------------------------
Confidence 699999999999999999998875 3221 111000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~--~~~ 193 (624)
.+ .+.+.+. .....+.||||||-. .+..+...|++++|++|+|+...+.+ +..- .|.
T Consensus 37 ---~~---~~~~~~~-~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~ 96 (175)
T cd01874 37 ---NY---AVTVMIG-GEPYTLGLFDTAGQE-------------DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWV 96 (175)
T ss_pred ---ee---EEEEEEC-CEEEEEEEEECCCcc-------------chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 0111111 122568899999942 23455667899999988876544321 2111 244
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..++...+ +.|+|+|.||+|+.+.
T Consensus 97 ~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 97 PEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHhCC-CCCEEEEEECHhhhhC
Confidence 34444333 5899999999998654
No 150
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.20 E-value=2.1e-10 Score=109.85 Aligned_cols=113 Identities=15% Similarity=0.215 Sum_probs=71.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-.+|+++|.++||||||++++....+ +. ..|+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~-~~------~~pt----------------------------------------- 48 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEI-VT------TIPT----------------------------------------- 48 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-cc------ccCC-----------------------------------------
Confidence 35899999999999999999986554 21 1120
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
.++.. ..+. . +...+.+||||| ++.++.+...|++++|++|+|+...+. ..-..+..
T Consensus 49 ----~g~~~--~~~~--~-~~~~~~i~D~~G-------------q~~~~~~~~~~~~~a~~iI~V~D~s~~-~s~~~~~~ 105 (181)
T PLN00223 49 ----IGFNV--ETVE--Y-KNISFTVWDVGG-------------QDKIRPLWRHYFQNTQGLIFVVDSNDR-DRVVEARD 105 (181)
T ss_pred ----cceeE--EEEE--E-CCEEEEEEECCC-------------CHHHHHHHHHHhccCCEEEEEEeCCcH-HHHHHHHH
Confidence 01110 0111 1 235689999999 344577888999999998876654432 22222332
Q ss_pred HHHHh-C---CCCCceEEEeccCcccCc
Q 006958 195 LAREV-D---PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 195 l~~~~-d---~~~~rti~VltK~D~~~~ 218 (624)
....+ . ..+.|+++|+||.|+.+.
T Consensus 106 ~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 106 ELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 22322 2 136799999999998654
No 151
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.20 E-value=2.5e-11 Score=117.08 Aligned_cols=131 Identities=23% Similarity=0.333 Sum_probs=76.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+|+|+.++|||||+++|++..- ..++.- ..+.-....+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~------~~~~~~------------------------------~~~~~~~~~~~~ 46 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAG------AIDKRG------------------------------IEETKNAFLDKH 46 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHT------SSSSHH------------------------------HHHHHHCHHHSS
T ss_pred EEEEEEECCCCCCcEeechhhhhhcc------cccccc------------------------------cccccccccccc
Confidence 46899999999999999999997642 111100 000000000000
Q ss_pred -hCCCCCcccccEEEEEe-cCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 115 -TGKSKQISNIPIQLSIY-SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 115 -~g~~~~~s~~~i~l~i~-~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.....+++-+.-..... ..+...++|+||||.. .+...+...+..+|++|+ |+++..+...+..
T Consensus 47 ~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~-------------~f~~~~~~~~~~~D~ail-vVda~~g~~~~~~ 112 (188)
T PF00009_consen 47 PEERERGITIDLSFISFEKNENNRKITLIDTPGHE-------------DFIKEMIRGLRQADIAIL-VVDANDGIQPQTE 112 (188)
T ss_dssp HHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-------------HHHHHHHHHHTTSSEEEE-EEETTTBSTHHHH
T ss_pred chhhhcccccccccccccccccccceeeccccccc-------------ceeecccceeccccccee-eeecccccccccc
Confidence 00112344443334343 3455789999999932 233445566889998776 5566655544432
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
..++.+...+.|.|+|+||+|+.
T Consensus 113 -~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 113 -EHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp -HHHHHHHHTT-SEEEEEETCTSS
T ss_pred -cccccccccccceEEeeeeccch
Confidence 24455555678899999999998
No 152
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.20 E-value=4.7e-11 Score=113.21 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~--~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.+|||||... ...+...+++.+|++|+++...+. .+.. ..++..++...+ +.|+++|.||
T Consensus 46 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 111 (174)
T smart00174 46 VELGLWDTAGQED-------------YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTK 111 (174)
T ss_pred EEEEEEECCCCcc-------------cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecC
Confidence 4689999999432 234555688899988876654332 1111 113333333333 7899999999
Q ss_pred CcccCc
Q 006958 213 LDLMDK 218 (624)
Q Consensus 213 ~D~~~~ 218 (624)
+|+...
T Consensus 112 ~Dl~~~ 117 (174)
T smart00174 112 LDLRED 117 (174)
T ss_pred hhhhhC
Confidence 999764
No 153
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.19 E-value=1e-10 Score=116.50 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999863
No 154
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.19 E-value=1.4e-10 Score=108.68 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=45.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~----d~~~~rti~Vl 210 (624)
...+.+|||||. +.+..+...|++++|++|+++...+. ..-..+.+....+ .....|.++|+
T Consensus 43 ~~~~~l~D~~G~-------------~~~~~~~~~~~~~ad~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDR-ERIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCC-------------HhHHHHHHHHhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 356899999993 23466778899999988776654432 1222222222222 11357899999
Q ss_pred ccCcccCc
Q 006958 211 TKLDLMDK 218 (624)
Q Consensus 211 tK~D~~~~ 218 (624)
||.|+.+.
T Consensus 109 NK~Dl~~~ 116 (159)
T cd04150 109 NKQDLPNA 116 (159)
T ss_pred ECCCCCCC
Confidence 99999654
No 155
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.19 E-value=4.3e-11 Score=118.70 Aligned_cols=153 Identities=22% Similarity=0.307 Sum_probs=90.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|-+||-||||||||||+|+..+-=-.....+|-.| ++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P---~i------------------------------------ 235 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRP---HI------------------------------------ 235 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeecc---cc------------------------------------
Confidence 356788999999999999999998763112234566666 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~ 191 (624)
| .+...+..++++-|+|||+..+..+... ---..+.|++++.+ ++|++.+.. ....+
T Consensus 236 --G------------~v~yddf~q~tVADiPGiI~GAh~nkGl------G~~FLrHiER~~~l-~fVvD~s~~~~~~p~~ 294 (366)
T KOG1489|consen 236 --G------------TVNYDDFSQITVADIPGIIEGAHMNKGL------GYKFLRHIERCKGL-LFVVDLSGKQLRNPWQ 294 (366)
T ss_pred --c------------eeeccccceeEeccCccccccccccCcc------cHHHHHHHHhhceE-EEEEECCCcccCCHHH
Confidence 1 0222333569999999999988753221 22345667788854 456666543 22222
Q ss_pred HHH-HHHHhCC-----CCCceEEEeccCcccCccccHHHHHhCcccccCCC-eeEEEeCChhhhc
Q 006958 192 AIK-LAREVDP-----TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADIN 249 (624)
Q Consensus 192 ~~~-l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~ 249 (624)
.++ +..++.. ...+.++|+||+|+.+...+.+.-+ ...+..+ .+.+++.+++++.
T Consensus 295 ~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L---~~~lq~~~V~pvsA~~~egl~ 356 (366)
T KOG1489|consen 295 QLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSL---AKRLQNPHVVPVSAKSGEGLE 356 (366)
T ss_pred HHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHH---HHHcCCCcEEEeeeccccchH
Confidence 222 3333321 2467999999999975443332222 1233333 5566666665443
No 156
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.19 E-value=5.2e-11 Score=112.00 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhC--CCCCceEEEe
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVD--PTGERTFGVL 210 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~~l~~~~d--~~~~rti~Vl 210 (624)
..+.+|||||..... ......+++.+|++|+++.. +...+- ..+...+.... ..+.|+++|+
T Consensus 47 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~ 113 (165)
T cd04146 47 VSLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSI-TDRSSFDEISQLKQLIREIKKRDREIPVILVG 113 (165)
T ss_pred EEEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEEC-CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 457899999965310 22345678899988776544 332221 22333444433 3468999999
Q ss_pred ccCcccCc
Q 006958 211 TKLDLMDK 218 (624)
Q Consensus 211 tK~D~~~~ 218 (624)
||+|+...
T Consensus 114 nK~Dl~~~ 121 (165)
T cd04146 114 NKADLLHY 121 (165)
T ss_pred ECCchHHh
Confidence 99998643
No 157
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.18 E-value=2.1e-10 Score=112.52 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=48.5
Q ss_pred CCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--HHHHH
Q 006958 119 KQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--AIKLA 196 (624)
Q Consensus 119 ~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~--~~~l~ 196 (624)
.+++.+.....+. .+...+.||||||.. .+...+..++..+|++++++ ++...+..+. ...++
T Consensus 61 rg~T~~~~~~~~~-~~~~~~~liDTpG~~-------------~~~~~~~~~~~~ad~~llVv-D~~~~~~~~~~~~~~~~ 125 (208)
T cd04166 61 QGITIDVAYRYFS-TPKRKFIIADTPGHE-------------QYTRNMVTGASTADLAILLV-DARKGVLEQTRRHSYIL 125 (208)
T ss_pred CCcCeecceeEEe-cCCceEEEEECCcHH-------------HHHHHHHHhhhhCCEEEEEE-ECCCCccHhHHHHHHHH
Confidence 3455555544443 345689999999942 12223445788999877655 5554443322 22233
Q ss_pred HHhCCCC-CceEEEeccCcccCc
Q 006958 197 REVDPTG-ERTFGVLTKLDLMDK 218 (624)
Q Consensus 197 ~~~d~~~-~rti~VltK~D~~~~ 218 (624)
+. .+ .++|+|+||+|+...
T Consensus 126 ~~---~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 126 SL---LGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred HH---cCCCcEEEEEEchhcccC
Confidence 33 24 357789999999753
No 158
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.18 E-value=1.8e-10 Score=109.65 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=45.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~----d~~~~rti~Vlt 211 (624)
..+.+|||||. .....+...|++++|++|+++...+.+ .-.++......+ ...+.|+++|+|
T Consensus 57 ~~l~l~D~~G~-------------~~~~~~~~~~~~~ad~ii~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQ-------------DKIRPLWRHYYTNTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCC-------------hhhHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 56899999993 234667888999999888866544322 122222222222 123578999999
Q ss_pred cCcccCc
Q 006958 212 KLDLMDK 218 (624)
Q Consensus 212 K~D~~~~ 218 (624)
|.|+.+.
T Consensus 123 K~Dl~~~ 129 (175)
T smart00177 123 KQDLPDA 129 (175)
T ss_pred CcCcccC
Confidence 9998653
No 159
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.17 E-value=3.9e-10 Score=108.11 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=44.8
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh-CC---CCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV-DP---TGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~-d~---~~~rti~Vlt 211 (624)
..+.+|||||. +.++.+...|++.+|++|+++...+.+ ....+......+ .. ...|+++|+|
T Consensus 61 ~~~~l~D~~G~-------------~~~~~~~~~~~~~ad~iI~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 61 LKFTMWDVGGQ-------------DKLRPLWRHYYQNTNGLIFVVDSNDRE-RIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EEEEEEECCCC-------------HhHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 57899999993 334667888999999988766544321 112222222222 11 3578999999
Q ss_pred cCcccCc
Q 006958 212 KLDLMDK 218 (624)
Q Consensus 212 K~D~~~~ 218 (624)
|.|+.+.
T Consensus 127 K~Dl~~~ 133 (182)
T PTZ00133 127 KQDLPNA 133 (182)
T ss_pred CCCCCCC
Confidence 9998653
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.17 E-value=2e-10 Score=111.06 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=40.6
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--HHHHHHHhCCCCCceEEEecc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--AIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~--~~~l~~~~d~~~~rti~VltK 212 (624)
...+++|||||... .+.. ....+..+|++++++ ++......+. .+.++.. .+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~~------------~~~~-~~~~~~~~d~vi~Vv-D~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHAS------------LIRT-IIGGAQIIDLMLLVV-DATKGIQTQTAECLVIGEI---LCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcHH------------HHHH-HHHHHhhCCEEEEEE-ECCCCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 46899999999521 1122 234456788877755 4544332222 2223322 36799999999
Q ss_pred CcccCc
Q 006958 213 LDLMDK 218 (624)
Q Consensus 213 ~D~~~~ 218 (624)
+|+...
T Consensus 130 ~Dl~~~ 135 (192)
T cd01889 130 IDLIPE 135 (192)
T ss_pred cccCCH
Confidence 999754
No 161
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.17 E-value=2.5e-10 Score=114.73 Aligned_cols=151 Identities=15% Similarity=0.204 Sum_probs=85.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++++|||||++++++..| +.... +|-..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-~~~y~-pTi~d-------------------------------------------- 35 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-EEQYT-PTIED-------------------------------------------- 35 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCC-CChhH--------------------------------------------
Confidence 589999999999999999998775 32111 01000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
+.. ..+.+. .....+.||||||.. .+..+...|+..+|++|+|+...+. .+-+....+.
T Consensus 36 ----~~~--k~~~i~-~~~~~l~I~Dt~G~~-------------~~~~~~~~~~~~ad~iIlVfdv~~~-~Sf~~i~~~~ 94 (247)
T cd04143 36 ----FHR--KLYSIR-GEVYQLDILDTSGNH-------------PFPAMRRLSILTGDVFILVFSLDNR-ESFEEVCRLR 94 (247)
T ss_pred ----hEE--EEEEEC-CEEEEEEEEECCCCh-------------hhhHHHHHHhccCCEEEEEEeCCCH-HHHHHHHHHH
Confidence 000 011121 122568899999942 2344556678899988776544332 1222222222
Q ss_pred HHh------------CCCCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 197 REV------------DPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 197 ~~~------------d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
.++ ...+.|+|+|+||+|+..... . ..+.+.. .....|+.+++.++.++++.+..+..
T Consensus 95 ~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~---~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 95 EQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG---DENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred HHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh---cCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 222 123689999999999975322 1 1222211 12345777888777777665554443
No 162
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.17 E-value=2.2e-10 Score=128.44 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=65.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCc-eEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGER-TFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--~~~~l~~~~d~~~~r-ti~VltK 212 (624)
..++|||||| .+.+......++.++|+++++ ++++.+...+ +.+.+++ ..+.+ .|+|+||
T Consensus 50 ~~v~~iDtPG-------------he~f~~~~~~g~~~aD~aILV-VDa~~G~~~qT~ehl~il~---~lgi~~iIVVlNK 112 (581)
T TIGR00475 50 YRLGFIDVPG-------------HEKFISNAIAGGGGIDAALLV-VDADEGVMTQTGEHLAVLD---LLGIPHTIVVITK 112 (581)
T ss_pred EEEEEEECCC-------------HHHHHHHHHhhhccCCEEEEE-EECCCCCcHHHHHHHHHHH---HcCCCeEEEEEEC
Confidence 6789999999 233344456677899987774 4565543332 3333443 34667 9999999
Q ss_pred CcccCccc------cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 213 LDLMDKGT------NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 213 ~D~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
+|+.+... ++.+++.+........++.+++.++.++.+....+....
T Consensus 113 ~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 113 ADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 99986532 122233221111135677888888887777666555443
No 163
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.17 E-value=2.6e-10 Score=113.08 Aligned_cols=118 Identities=18% Similarity=0.237 Sum_probs=76.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
+..-.|+|||+.++|||||+.++++..| +... .|+...
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi~~------------------------------------ 48 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTVFE------------------------------------ 48 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCceee------------------------------------
Confidence 3455899999999999999999998876 3221 121100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-- 189 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~-- 189 (624)
.+ ...+.+.+ ....|.|||||| .+.+..+...|++++|++|||....+.+ +..
T Consensus 49 -------~~---~~~i~~~~-~~v~l~iwDTaG-------------~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 49 -------NY---TAGLETEE-QRVELSLWDTSG-------------SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred -------ee---EEEEEECC-EEEEEEEEeCCC-------------chhhHHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 00 01111211 235689999999 3445677778999999888766544322 211
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccC
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
..|...++...+ +.++|+|.||+|+.+
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 245555555554 579999999999854
No 164
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.16 E-value=2.2e-10 Score=112.92 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=68.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++++|||||++++++..| +. ...|-.+ .
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f-~~--~~~Tig~---~---------------------------------------- 35 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF-KD--TVSTVGG---A---------------------------------------- 35 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CC--CCCccce---E----------------------------------------
Confidence 589999999999999999999886 21 1111111 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~-~~~~~ 194 (624)
+ ....+ ...++.||||||-. .+..+...|++++|++|+++...+.. +.. ..++.
T Consensus 36 ----~----~~~~~---~~~~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~ 91 (220)
T cd04126 36 ----F----YLKQW---GPYNISIWDTAGRE-------------QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFL 91 (220)
T ss_pred ----E----EEEEe---eEEEEEEEeCCCcc-------------cchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0 00001 12468999999932 23556778899999887765433321 111 12222
Q ss_pred HHHHhCCCCCceEEEeccCcccC
Q 006958 195 LAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~ 217 (624)
.+.+....+.++|+|.||+|+.+
T Consensus 92 ~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 92 GLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHhcCCCCcEEEEEECccccc
Confidence 22333344678999999999975
No 165
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.16 E-value=1.3e-10 Score=112.94 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.|||||| .+.+..+...|++.+|++|+|+...+ ..+. ..|...++... .+.|+++|.||
T Consensus 44 ~~l~iwDt~G-------------~e~~~~l~~~~~~~ad~~ilV~D~t~-~~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 44 IRFNVWDTAG-------------QEKFGGLRDGYYIQGQCAIIMFDVTA-RVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEECCC-------------chhhhhhhHHHhcCCCEEEEEEECCC-hHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 5789999999 44567788889999998877654433 2222 23444444443 36899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHH
Q 006958 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRK 260 (624)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (624)
+|+....... +.+. .....+..|+.+++.++.++.+.+..+.....
T Consensus 109 ~Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 109 VDVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred cccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9986432211 1111 01223467888888888888877776665543
No 166
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.16 E-value=7.6e-10 Score=118.13 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=32.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEE
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~ 74 (624)
.+|++||.||||||||+|+|++..+-......||+.|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999998644455668888854
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.16 E-value=2.1e-10 Score=129.95 Aligned_cols=121 Identities=17% Similarity=0.323 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
.+.|.|+|+|..++|||||+++|.+..+.....+-.|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq------------------------------------------ 279 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQ------------------------------------------ 279 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccc------------------------------------------
Confidence 57899999999999999999999987651110000110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.+....+.+.. ......++|||||| .+.+..+...++..+|++||+| ++......+.
T Consensus 280 -------~i~~~~v~~~~-~~~~~kItfiDTPG-------------he~F~~mr~rg~~~aDiaILVV-DA~dGv~~QT- 336 (742)
T CHL00189 280 -------KIGAYEVEFEY-KDENQKIVFLDTPG-------------HEAFSSMRSRGANVTDIAILII-AADDGVKPQT- 336 (742)
T ss_pred -------ccceEEEEEEe-cCCceEEEEEECCc-------------HHHHHHHHHHHHHHCCEEEEEE-ECcCCCChhh-
Confidence 00001111111 11236799999999 3456777788999999887765 5554433322
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...++.+...+.|+|+|+||+|+...
T Consensus 337 ~E~I~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 337 IEAINYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred HHHHHHHHhcCceEEEEEECCCcccc
Confidence 22334455568899999999999753
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.16 E-value=2.4e-10 Score=127.71 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006958 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (624)
Q Consensus 32 ~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (624)
....|.|+++|+.++|||||+++|.+..+.....+-.|
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT------------------------------------------ 121 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGIT------------------------------------------ 121 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCcee------------------------------------------
Confidence 35779999999999999999999998875221111011
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
.+.-...+..++...++||||||.. .+..+..+++..+|++||+| +++.....+
T Consensus 122 -----------~~ig~~~v~~~~~~~i~~iDTPGhe-------------~F~~~r~rga~~aDiaILVV-da~dgv~~q- 175 (587)
T TIGR00487 122 -----------QHIGAYHVENEDGKMITFLDTPGHE-------------AFTSMRARGAKVTDIVVLVV-AADDGVMPQ- 175 (587)
T ss_pred -----------ecceEEEEEECCCcEEEEEECCCCc-------------chhhHHHhhhccCCEEEEEE-ECCCCCCHh-
Confidence 0000011222222379999999932 23556667888999887765 555433222
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccC
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
....++.....+.|+|+++||+|+..
T Consensus 176 T~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 176 TIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HHHHHHHHHHcCCCEEEEEECccccc
Confidence 22334444556789999999999864
No 169
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.16 E-value=1.4e-10 Score=109.79 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.-.|+++|++|+|||||++++++..|-|.... +|-.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-~T~~~----------------------------------------- 40 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYS-PTIKP----------------------------------------- 40 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCC-CccCc-----------------------------------------
Confidence 345799999999999999999999876212211 11100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.+.... +.+.+ ....+.++|++|-.. ...+...|++++|++++++ +++....-....
T Consensus 41 ------~~~~~~--~~~~~-~~~~l~~~d~~g~~~-------------~~~~~~~~~~~~d~~llv~-d~~~~~s~~~~~ 97 (169)
T cd01892 41 ------RYAVNT--VEVYG-QEKYLILREVGEDEV-------------AILLNDAELAACDVACLVY-DSSDPKSFSYCA 97 (169)
T ss_pred ------ceEEEE--EEECC-eEEEEEEEecCCccc-------------ccccchhhhhcCCEEEEEE-eCCCHHHHHHHH
Confidence 000000 11111 124688999999332 2345567889999877765 443322222222
Q ss_pred HHHHHhC-CCCCceEEEeccCcccCc
Q 006958 194 KLAREVD-PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d-~~~~rti~VltK~D~~~~ 218 (624)
.+.+.+. ..+.|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 98 EVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHHhccCCCCeEEEEEEccccccc
Confidence 3444442 336899999999998654
No 170
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.15 E-value=2.1e-10 Score=103.51 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
+|++||..+||||||+++|.|...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC
Confidence 799999999999999999999875
No 171
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.8e-11 Score=111.97 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=97.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.||++|+.|+|||||+.+++-.+| +.....
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~------------------------------------------------ 36 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQF-HENIEP------------------------------------------------ 36 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCcc-cccccc------------------------------------------------
Confidence 3699999999999999999998887 221110
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
+.|-+.-...+.+. .....+.||||.| ++.+..++.-|++++++.|++. +.+..-+-..+..+
T Consensus 37 --TIGaaF~tktv~~~-~~~ikfeIWDTAG-------------QERy~slapMYyRgA~AAivvY-Dit~~~SF~~aK~W 99 (200)
T KOG0092|consen 37 --TIGAAFLTKTVTVD-DNTIKFEIWDTAG-------------QERYHSLAPMYYRGANAAIVVY-DITDEESFEKAKNW 99 (200)
T ss_pred --ccccEEEEEEEEeC-CcEEEEEEEEcCC-------------cccccccccceecCCcEEEEEE-ecccHHHHHHHHHH
Confidence 11111111222221 2235688999999 5556888889999999877754 44432233334444
Q ss_pred HHHhCCCC---CceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHH
Q 006958 196 AREVDPTG---ERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKE 261 (624)
Q Consensus 196 ~~~~d~~~---~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (624)
++++.... .-+-+|.||+|+.+... ++..+. ...++.|+.+++.++.++++.+..+.....+
T Consensus 100 vkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yA----e~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 100 VKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYA----ESQGLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred HHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHH----HhcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence 55553332 33446899999998433 222222 2356779999999888887766655555444
No 172
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.15 E-value=4.3e-10 Score=125.38 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
...|.|+++|++++|||||+|+|.|..+.....|-.|+-.-.... .. +.. .
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v-~~--------------------~~~--------~ 52 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI-PM--------------------DVI--------E 52 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe-ee--------------------ccc--------c
Confidence 367999999999999999999999987633333333332100000 00 000 0
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
...+. ... ..++. ...+.++||||||. +.+..+...++..+|+++|++ +++.+...+.
T Consensus 53 ~~~~~----~~~--~~~v~-~~~~~l~~iDTpG~-------------e~f~~l~~~~~~~aD~~IlVv-D~~~g~~~qt- 110 (590)
T TIGR00491 53 GICGD----LLK--KFKIR-LKIPGLLFIDTPGH-------------EAFTNLRKRGGALADLAILIV-DINEGFKPQT- 110 (590)
T ss_pred ccccc----ccc--ccccc-cccCcEEEEECCCc-------------HhHHHHHHHHHhhCCEEEEEE-ECCcCCCHhH-
Confidence 00000 000 00011 11246999999993 344666677889999877755 5554333332
Q ss_pred HHHHHHhCCCCCceEEEeccCcccC
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
...+..+...+.|.++|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 2233333445789999999999974
No 173
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.15 E-value=1.7e-10 Score=114.11 Aligned_cols=75 Identities=23% Similarity=0.234 Sum_probs=48.3
Q ss_pred EecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEE
Q 006958 130 IYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFG 208 (624)
Q Consensus 130 i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi-~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~ 208 (624)
+.......++||||||.. .....+..... ..+|.+++ |+++..+...++. .++..+...+.|.++
T Consensus 78 ~~~~~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D~~ll-Vvda~~g~~~~d~-~~l~~l~~~~ip~iv 143 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPDYAML-VVAANAGIIGMTK-EHLGLALALNIPVFV 143 (224)
T ss_pred eeeeCCcEEEEEECCCcH------------HHHHHHHHhhcccCCCEEEE-EEECCCCCcHHHH-HHHHHHHHcCCCEEE
Confidence 334445689999999942 22233333322 36887665 5566665554433 355666667899999
Q ss_pred EeccCcccCc
Q 006958 209 VLTKLDLMDK 218 (624)
Q Consensus 209 VltK~D~~~~ 218 (624)
|+||+|+.++
T Consensus 144 vvNK~D~~~~ 153 (224)
T cd04165 144 VVTKIDLAPA 153 (224)
T ss_pred EEECccccCH
Confidence 9999999764
No 174
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.15 E-value=3.1e-10 Score=107.51 Aligned_cols=115 Identities=22% Similarity=0.407 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.-.+|+++|.+|||||||+++|.|..+ + +..|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~------~~~~----------------------------------------- 44 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-S------HITP----------------------------------------- 44 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-c------ccCC-----------------------------------------
Confidence 457899999999999999999999754 1 0111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~-~~ 191 (624)
+.++... . +.. +..++.+||+||. ..+..++..+++.+|++++++...+.. +.. ..
T Consensus 45 ----t~g~~~~--~--i~~-~~~~~~~~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~ 102 (173)
T cd04155 45 ----TQGFNIK--T--VQS-DGFKLNVWDIGGQ-------------RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGA 102 (173)
T ss_pred ----CCCcceE--E--EEE-CCEEEEEEECCCC-------------HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHH
Confidence 0011111 1 111 1356899999993 234566778889999877766544321 111 11
Q ss_pred HH-HHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AI-KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~-~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++ .+.+.....+.|+++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 103 ELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 11 1222223346899999999998754
No 175
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.14 E-value=2.6e-10 Score=109.31 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=74.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|+.++|||||+.++.+..| +.... +|-..
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~------------------------------------------- 40 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE------------------------------------------- 40 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceee-------------------------------------------
Confidence 4799999999999999999998876 32211 11100
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~--~~~ 192 (624)
.+ ...+.+. .....+.||||+| .+.+..+...|++++|++|||+.-.+. .+.+ ..|
T Consensus 41 ----~~---~~~~~~~-~~~~~l~iwDtaG-------------~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w 99 (182)
T cd04172 41 ----NY---TASFEID-TQRIELSLWDTSG-------------SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 99 (182)
T ss_pred ----ee---EEEEEEC-CEEEEEEEEECCC-------------chhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111121 2235689999999 344566777899999988886654332 1222 244
Q ss_pred HHHHHHhCCCCCceEEEeccCcccC
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
...++...+ ..+.|+|.||+|+.+
T Consensus 100 ~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 100 KGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHCC-CCCEEEEeEChhhhc
Confidence 445555555 589999999999864
No 176
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.14 E-value=1.5e-10 Score=110.23 Aligned_cols=115 Identities=26% Similarity=0.279 Sum_probs=73.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|+.++|||||+.+++...| +.... +|-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~-~Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYI-PTVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCC-Cccee--------------------------------------------
Confidence 689999999999999999998876 32211 11100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~--~~~~ 193 (624)
.+ ...+.+.+ ....+.||||+|- +.+..+...|+++++++|||..-.+. .+.+ ..|.
T Consensus 37 ---~~---~~~~~~~~-~~v~l~i~Dt~G~-------------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~ 96 (176)
T cd04133 37 ---NF---SANVSVDG-NTVNLGLWDTAGQ-------------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWV 96 (176)
T ss_pred ---ee---EEEEEECC-EEEEEEEEECCCC-------------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 00 01122222 2367899999993 23355667799999998886643332 2222 2355
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..++...+ +.++++|.||+|+.+.
T Consensus 97 ~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 97 PELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHhCC-CCCEEEEEeChhhccC
Confidence 44555444 6899999999999653
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.13 E-value=2.4e-10 Score=130.62 Aligned_cols=117 Identities=17% Similarity=0.268 Sum_probs=75.0
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006958 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (624)
Q Consensus 32 ~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (624)
....|.|+|+|+.++|||||+++|.+.++. .+. .+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e-----~~--------------------------------------- 321 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGE-----AG--------------------------------------- 321 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccc-----cC---------------------------------------
Confidence 357899999999999999999999887651 110 00
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
+++.+.-...+... ...++||||||.. .+..+..+++..+|++||+| +++.....+.
T Consensus 322 --------GIT~~iga~~v~~~-~~~ItfiDTPGhe-------------~F~~m~~rga~~aDiaILVV-dAddGv~~qT 378 (787)
T PRK05306 322 --------GITQHIGAYQVETN-GGKITFLDTPGHE-------------AFTAMRARGAQVTDIVVLVV-AADDGVMPQT 378 (787)
T ss_pred --------ceeeeccEEEEEEC-CEEEEEEECCCCc-------------cchhHHHhhhhhCCEEEEEE-ECCCCCCHhH
Confidence 01110000112122 2569999999943 23556667888999877755 5554433222
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccC
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
...++.+...+.|+|+|+||+|+..
T Consensus 379 -~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 379 -IEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred -HHHHHHHHhcCCcEEEEEECccccc
Confidence 2233445556789999999999964
No 178
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.13 E-value=4.4e-10 Score=114.25 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=76.7
Q ss_pred EEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGK 117 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~ 117 (624)
|+++|..++|||||+|+|+... |.+.+.- ...++ ....|+.. ...
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~------g~~~~~g------~v~~~-----------~~~~D~~~------------~E~ 46 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYT------GRIHKIG------EVHGG-----------GATMDFME------------QER 46 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHc------CCCcccc------cccCC-----------ccccCCCc------------ccc
Confidence 7999999999999999997532 1111100 00000 00111100 011
Q ss_pred CCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHH
Q 006958 118 SKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAR 197 (624)
Q Consensus 118 ~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~ 197 (624)
..++|-+.....+... ...++||||||..+ +...+.++++.+|++|++| ++......++. .+++
T Consensus 47 ~rgiti~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ailVV-Da~~g~~~~t~-~~~~ 110 (270)
T cd01886 47 ERGITIQSAATTCFWK-DHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAVF-DAVAGVEPQTE-TVWR 110 (270)
T ss_pred CCCcCeeccEEEEEEC-CEEEEEEECCCcHH-------------HHHHHHHHHHHcCEEEEEE-ECCCCCCHHHH-HHHH
Confidence 2344444333334333 46899999999543 2334678889999877754 56555544432 3555
Q ss_pred HhCCCCCceEEEeccCcccCc
Q 006958 198 EVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 198 ~~d~~~~rti~VltK~D~~~~ 218 (624)
.+...+.|.++++||+|+...
T Consensus 111 ~~~~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 111 QADRYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHcCCCEEEEEECCCCCCC
Confidence 555568899999999998753
No 179
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.12 E-value=2.2e-10 Score=119.46 Aligned_cols=133 Identities=29% Similarity=0.405 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCc-----ccccccccccccEEEEEEeC
Q 006958 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDF-----LPRGSGIVTRRPLVLQLHQT 80 (624)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~-----lP~~~~~~Tr~p~~~~l~~~ 80 (624)
++-..++++++.+..+... .-.|+|+|+.|+|||||+|||-|..- -|+|..-+|..|
T Consensus 16 ~~~~~~s~i~~~l~~~~~~----------~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~-------- 77 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDNA----------PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP-------- 77 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---------
T ss_pred CHHHHHHHHHHHHHHhhcC----------ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--------
Confidence 4556778888888777642 23899999999999999999988531 111111111111
Q ss_pred CCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHH
Q 006958 81 EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (624)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~ 160 (624)
-....|+.+++++||+||+...... ..+
T Consensus 78 -----------------------------------------------~~Y~~p~~pnv~lWDlPG~gt~~f~-----~~~ 105 (376)
T PF05049_consen 78 -----------------------------------------------TPYPHPKFPNVTLWDLPGIGTPNFP-----PEE 105 (376)
T ss_dssp -----------------------------------------------EEEE-SS-TTEEEEEE--GGGSS-------HHH
T ss_pred -----------------------------------------------eeCCCCCCCCCeEEeCCCCCCCCCC-----HHH
Confidence 0134678899999999998754332 111
Q ss_pred HHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 161 ~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
-+..+ -+..-|.+|+ +.+ + .+...++ .+++++...|++..+|-||+|.
T Consensus 106 Yl~~~---~~~~yD~fii-i~s-~-rf~~ndv-~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 106 YLKEV---KFYRYDFFII-ISS-E-RFTENDV-QLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHT---TGGG-SEEEE-EES-S-S--HHHH-HHHHHHHHTT-EEEEEE--HHH
T ss_pred HHHHc---cccccCEEEE-EeC-C-CCchhhH-HHHHHHHHcCCcEEEEEecccc
Confidence 11111 2346786554 333 2 2444444 4889888899999999999996
No 180
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.12 E-value=2.3e-10 Score=110.42 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=70.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|++++|||||++++++..| |... .|+...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~-~~~~-----~~t~~~---------------------------------------- 35 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF-PQVY-----EPTVFE---------------------------------------- 35 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcc-----CCccee----------------------------------------
Confidence 689999999999999999999875 3211 110000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH--HHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS--DAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~~--~~~ 193 (624)
.+ ...+.+. .....+.||||||-. .+..+...|+..+|++|++..-.+. .+.+. .|+
T Consensus 36 ---~~---~~~i~~~-~~~~~l~i~Dt~G~~-------------~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~ 95 (189)
T cd04134 36 ---NY---VHDIFVD-GLHIELSLWDTAGQE-------------EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWL 95 (189)
T ss_pred ---ee---EEEEEEC-CEEEEEEEEECCCCh-------------hccccccccccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 0011111 122568999999932 2244555688899988876543332 22221 244
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..++...+ +.|+++|.||+|+.+.
T Consensus 96 ~~i~~~~~-~~piilvgNK~Dl~~~ 119 (189)
T cd04134 96 GEIREHCP-GVKLVLVALKCDLREA 119 (189)
T ss_pred HHHHHhCC-CCCEEEEEEChhhccC
Confidence 44444333 6899999999999754
No 181
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.12 E-value=6.6e-10 Score=107.43 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=73.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|+.++|||||+.+++...| |... .|+...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~--------------------------------------- 38 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFD--------------------------------------- 38 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEe---------------------------------------
Confidence 4799999999999999999998775 3221 121100
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--HH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--DA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~--~~ 192 (624)
.+ ...+.+. .....+.|||||| .+.++.+...|++++|++|+++.-.+.+ +..- .|
T Consensus 39 ----~~---~~~~~~~-~~~~~l~i~Dt~G-------------~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w 97 (191)
T cd01875 39 ----NY---SAQTAVD-GRTVSLNLWDTAG-------------QEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKW 97 (191)
T ss_pred ----ee---EEEEEEC-CEEEEEEEEECCC-------------chhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0011121 2235789999999 4556778888999999888766443321 1111 23
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...++...+ +.|+++|.||.|+.+.
T Consensus 98 ~~~i~~~~~-~~piilvgNK~DL~~~ 122 (191)
T cd01875 98 HPEVCHHCP-NVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHhhCC-CCCEEEEEeChhhhcC
Confidence 333333333 6899999999999654
No 182
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.12 E-value=9.5e-10 Score=106.94 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=47.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHHHHHHHHh--------------
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAIKLAREV-------------- 199 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~~~l~~~~-------------- 199 (624)
..+.||||+| .+.+..+...|++++|++|+|+.-.+.+ + ....|+..+...
T Consensus 54 ~~l~IwDtaG-------------~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 54 FFVELWDVGG-------------SESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred EEEEEEecCC-------------chhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 4588999999 3455778888999999988866544321 1 113444434332
Q ss_pred -----CCCCCceEEEeccCcccCc
Q 006958 200 -----DPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 200 -----d~~~~rti~VltK~D~~~~ 218 (624)
.+.+.|+|+|.||+|+.+.
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cccccCCCCceEEEEEECccchhh
Confidence 1235799999999999764
No 183
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.12 E-value=3.3e-10 Score=108.21 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=72.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|+.++|||||++++.+..| |... .|+...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTVFE---------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCceEE----------------------------------------
Confidence 699999999999999999999875 4321 121100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~~ 193 (624)
.+ ...+.+.+ ....+.|||||| .+....+...|++++|++|+++.-.+.+ +.. ..|.
T Consensus 37 ---~~---~~~~~~~~-~~~~l~iwDt~G-------------~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~ 96 (178)
T cd04131 37 ---NY---TASFEIDE-QRIELSLWDTSG-------------SPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWR 96 (178)
T ss_pred ---EE---EEEEEECC-EEEEEEEEECCC-------------chhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHH
Confidence 00 01111222 235789999999 2334556667899999887766443321 221 3455
Q ss_pred HHHHHhCCCCCceEEEeccCcccC
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
..++...+ ..++++|.||+|+.+
T Consensus 97 ~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 97 GEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHCC-CCCEEEEEEChhhhc
Confidence 45555555 589999999999864
No 184
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.11 E-value=7.2e-10 Score=113.14 Aligned_cols=136 Identities=21% Similarity=0.341 Sum_probs=76.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc-ccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV-TRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.|+|||..|+|||||+|+|++..+.+.+.... +..+ .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~-----------------------------------------~- 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH-----------------------------------------I- 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc-----------------------------------------c-
Confidence 79999999999999999999998754432111 0000 0
Q ss_pred CCCCCcccccEEEEEecCC-CCCcEEEeCCCCccccCCC-CCccHHHHHHHHHHHhh------------c--CCCEEEEE
Q 006958 116 GKSKQISNIPIQLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYV------------E--KPSCIILA 179 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~~-~~~~~~~~i~~~~~~yi------------~--~~~~iiL~ 179 (624)
..+..+ ......+...+ ...+++|||||+....... .-+.+.+-+.+....|+ . +.|+++++
T Consensus 44 ~~T~~i--~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 44 DKTVEI--KSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred CCceEE--EEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 000000 01111122111 1469999999997654321 11222222222222222 2 35666665
Q ss_pred EecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 180 ISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 180 V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+.+....+...+ +++++.+.. +.++|+|+||+|++..
T Consensus 122 i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 122 IEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred EeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 655554555544 447777764 7899999999999764
No 185
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.11 E-value=6.5e-10 Score=105.76 Aligned_cols=115 Identities=24% Similarity=0.241 Sum_probs=71.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|+.|+|||||+.++++..| +.... .|-.+ .
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f-~~~~~-~t~~~---~---------------------------------------- 37 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF-PGEYI-PTVFD---N---------------------------------------- 37 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcCC-Cccee---e----------------------------------------
Confidence 689999999999999999998765 32211 11001 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~~ 193 (624)
....+.+. .....+.||||||- +....+...|++++|++|+++...+.+ +.. ..|+
T Consensus 38 -------~~~~~~~~-~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~ 96 (174)
T cd01871 38 -------YSANVMVD-GKPVNLGLWDTAGQ-------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWY 96 (174)
T ss_pred -------eEEEEEEC-CEEEEEEEEECCCc-------------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00111121 12246889999993 333556677899999988866554321 111 1234
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..++...+ ..|+++|.||+|+.+.
T Consensus 97 ~~~~~~~~-~~piilvgnK~Dl~~~ 120 (174)
T cd01871 97 PEVRHHCP-NTPIILVGTKLDLRDD 120 (174)
T ss_pred HHHHHhCC-CCCEEEEeeChhhccC
Confidence 44444333 6899999999999653
No 186
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.10 E-value=4.8e-10 Score=106.41 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=67.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|+|+++||||||++++.+..| |.... .|-.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~-~t~~~------------------------------------------- 36 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYV-PTVFE------------------------------------------- 36 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-Ccccc-------------------------------------------
Confidence 5799999999999999999999875 32111 11000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~--~~~ 192 (624)
.....+.+.+ ....+.+|||||... ...+...++.++|++++++.-.+. ++.. ..+
T Consensus 37 -------~~~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~ 95 (175)
T cd01870 37 -------NYVADIEVDG-KQVELALWDTAGQED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 95 (175)
T ss_pred -------ceEEEEEECC-EEEEEEEEeCCCchh-------------hhhccccccCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0001111211 224689999999422 233344577889987765433322 1111 113
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...++... .+.|+++|+||+|+.+.
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 96 TPEVKHFC-PNVPIILVGNKKDLRND 120 (175)
T ss_pred HHHHHhhC-CCCCEEEEeeChhcccC
Confidence 33333333 36899999999998754
No 187
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.4e-10 Score=100.56 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=90.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
=|-.||+||+.++||+.|+.+++.. .||-|.|.+-..-
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvd----------------------------------------- 43 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVD----------------------------------------- 43 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeee-----------------------------------------
Confidence 3668999999999999999999977 4687776432222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe-cCCC-ccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS-PANQ-DIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~-~a~~-d~~~~~ 191 (624)
.-...+++.+. ...|.+|||.| ++.+++++.+|.+.++++||+.. ++.. .-...+
T Consensus 44 ---------fmiktvev~ge-kiklqiwdtag-------------qerfrsitqsyyrsahalilvydiscqpsfdclpe 100 (213)
T KOG0095|consen 44 ---------FMIKTVEVNGE-KIKLQIWDTAG-------------QERFRSITQSYYRSAHALILVYDISCQPSFDCLPE 100 (213)
T ss_pred ---------EEEEEEEECCe-EEEEEEeeccc-------------hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHH
Confidence 11222333332 35799999999 88999999999999999998753 3333 234467
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
|+.-+.++.....-.|+|.||+|+.++.
T Consensus 101 wlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 101 WLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHHhhcceEEEeeccccchhhhh
Confidence 8877777777777889999999998764
No 188
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.10 E-value=4.4e-10 Score=108.72 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=74.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..|+++|..++|||||+++|++..- ..|... .+. ...|... .
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~-~~g~~~~~~~-------------------------~~~d~~~--~--------- 45 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLA-KKGGAKFKKY-------------------------DEIDKAP--E--------- 45 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-hccccccccc-------------------------ccccCCh--h---------
Confidence 3699999999999999999997521 111000 000 0000000 0
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
...+++|-+...+... .+...++|+||||.. . +...+...+..+|++++ |+++..+...++. .
T Consensus 46 -E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~------------~-~~~~~~~~~~~~D~~il-Vvda~~g~~~~~~-~ 108 (195)
T cd01884 46 -EKARGITINTAHVEYE-TANRHYAHVDCPGHA------------D-YIKNMITGAAQMDGAIL-VVSATDGPMPQTR-E 108 (195)
T ss_pred -hhhcCccEEeeeeEec-CCCeEEEEEECcCHH------------H-HHHHHHHHhhhCCEEEE-EEECCCCCcHHHH-H
Confidence 0112344443333333 345689999999943 2 23334556778998776 4556555544432 2
Q ss_pred HHHHhCCCCCc-eEEEeccCcccCc
Q 006958 195 LAREVDPTGER-TFGVLTKLDLMDK 218 (624)
Q Consensus 195 l~~~~d~~~~r-ti~VltK~D~~~~ 218 (624)
+++.+...+.+ .|+|+||+|+.+.
T Consensus 109 ~~~~~~~~~~~~iIvviNK~D~~~~ 133 (195)
T cd01884 109 HLLLARQVGVPYIVVFLNKADMVDD 133 (195)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCCCc
Confidence 44455556676 7799999999753
No 189
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.10 E-value=2e-09 Score=111.56 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=63.3
Q ss_pred EEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGK 117 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~ 117 (624)
|++||.+|+|||||+|+|++..+-+.....||.-|+.-...-.. ..|...+ +.....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~---------~~~~~r~--------------~~~~~~ 57 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRV---------ECPCKEL--------------GVSCNP 57 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEec---------CCCchhh--------------hhhhcc
Confidence 68999999999999999999986444445688888543321100 0000000 000000
Q ss_pred CCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEec
Q 006958 118 SKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISP 182 (624)
Q Consensus 118 ~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~ 182 (624)
..+ ..+.+....++.+|||||++..+.. ...+.+...++++++|+++++|..
T Consensus 58 ~~~-------~~~~~~~~v~i~l~D~aGlv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~ 109 (318)
T cd01899 58 RYG-------KCIDGKRYVPVELIDVAGLVPGAHE------GKGLGNKFLDDLRDADALIHVVDA 109 (318)
T ss_pred ccc-------ccccCcCcceEEEEECCCCCCCccc------hhhHHHHHHHHHHHCCEEEEEEeC
Confidence 000 0011222356999999999865433 233445566789999988876643
No 190
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.10 E-value=5.9e-10 Score=102.66 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~ 65 (624)
++|+++|.++||||||+++|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 579999999999999999999987 45443
No 191
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.10 E-value=3.5e-10 Score=126.98 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=67.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
.++.+|||||..+..... .. +.+...|+. .+|.+++++ +++. .++.+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aDvvI~Vv-Dat~---ler~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPDLVVNVV-DASN---LERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCccc----hH---HHHHHHHHhhcCCCEEEEEe-cCCc---chhhHHHHHHHHhcCCCEEEEEehh
Confidence 468999999987643321 11 234445553 688766654 4443 2334445556656789999999999
Q ss_pred cccCccccH--HHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 214 DLMDKGTNA--LEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 214 D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
|+.++.... .+.+ ...++.+++.++++++.++++..+.+.+
T Consensus 110 Dl~~~~~i~~d~~~L---~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRIDEEKL---EERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhhHHHH---HHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 997543211 1222 2234567888999988888777665544
No 192
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.09 E-value=3.4e-10 Score=107.42 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.+|||||... +..+...|++++|++|+++...+.. +.. ..++..++... .+.|+++|+||
T Consensus 48 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQDE-------------FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCChh-------------hccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeC
Confidence 4688999999532 2344456889999887766443321 211 12333333322 36899999999
Q ss_pred CcccCc
Q 006958 213 LDLMDK 218 (624)
Q Consensus 213 ~D~~~~ 218 (624)
+|+...
T Consensus 114 ~Dl~~~ 119 (173)
T cd04130 114 ADLRTD 119 (173)
T ss_pred hhhccC
Confidence 998653
No 193
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.09 E-value=4.6e-10 Score=106.39 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=67.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|++++|||||++++.+..| +.... .|-.. .
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~-~~~~~-~t~~~---~---------------------------------------- 36 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF-PEEYV-PTVFD---H---------------------------------------- 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCC-Cceee---e----------------------------------------
Confidence 689999999999999999999876 22111 11000 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~~ 193 (624)
....+.+.+ ....+.+|||||-... ..+...++..+|++++++...+.. +.. ..+.
T Consensus 37 -------~~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~ 95 (174)
T cd04135 37 -------YAVSVTVGG-KQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWV 95 (174)
T ss_pred -------eEEEEEECC-EEEEEEEEeCCCcccc-------------cccccccCCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000111111 1235789999994321 223445778899877766443321 111 1233
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..++.. ..+.|.++|+||+|+.+.
T Consensus 96 ~~l~~~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 96 PELKEY-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred HHHHhh-CCCCCEEEEeEchhhhcC
Confidence 344444 457899999999998654
No 194
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=9e-10 Score=110.92 Aligned_cols=168 Identities=21% Similarity=0.297 Sum_probs=102.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccc---cccccccccEEEEEEeCCCCCcce-eeccCCCCccCChHHHHHHHH
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPR---GSGIVTRRPLVLQLHQTEGGTDYA-EFLHAPRKKFTDFAAVRKEIS 108 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~---~~~~~Tr~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~i~ 108 (624)
..-|.|.++|..|.||||+|+.|++.+| |- |..++|.+-+.+- +....+..-+ ...-++.. .|..+..-=.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM-~G~~e~~ipGnal~vd~~~---pF~gL~~FG~ 130 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVM-HGDEEGSIPGNALVVDAKK---PFRGLNKFGN 130 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEE-ecCcccccCCceeeecCCC---chhhhhhhHH
Confidence 5789999999999999999999999985 61 1223333332222 1111000000 00011112 2333332211
Q ss_pred HHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc
Q 006958 109 DETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA 188 (624)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~ 188 (624)
.-.++..+ .++.++-...++||||||+.+..... -+-.-.+...+..|++++|.|||+..+..-|++
T Consensus 131 aflnRf~c-----------sqmp~~vLe~vtiVdtPGILsgeKQr--isR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIs 197 (532)
T KOG1954|consen 131 AFLNRFMC-----------SQLPNQVLESVTIVDTPGILSGEKQR--ISRGYDFTGVLEWFAERVDRIILLFDAHKLDIS 197 (532)
T ss_pred HHHHHHHH-----------hcCChhhhhheeeeccCcccccchhc--ccccCChHHHHHHHHHhccEEEEEechhhcccc
Confidence 11222222 22334444689999999998754321 111123567788999999999998888887877
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 189 TSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 189 ~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.+-.. .+..+......+-+|+||.|.++..
T Consensus 198 dEf~~-vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 198 DEFKR-VIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred HHHHH-HHHHhhCCcceeEEEeccccccCHH
Confidence 65443 6777888888999999999999864
No 195
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.08 E-value=1.9e-10 Score=107.63 Aligned_cols=147 Identities=19% Similarity=0.296 Sum_probs=90.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|+.++|||||++++.+..| |.... .|-..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~-------------------------------------------- 34 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYI-PTIGI-------------------------------------------- 34 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSE-TTSSE--------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccc-ccccc--------------------------------------------
Confidence 489999999999999999999875 32221 11100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~~ 194 (624)
......+.+. .....+.|||+||-. .+..+...+++++|++|++....+.. .....|+.
T Consensus 35 -----~~~~~~~~~~-~~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~ 95 (162)
T PF00071_consen 35 -----DSYSKEVSID-GKPVNLEIWDTSGQE-------------RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLE 95 (162)
T ss_dssp -----EEEEEEEEET-TEEEEEEEEEETTSG-------------GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHH
T ss_pred -----cccccccccc-ccccccccccccccc-------------cccccccccccccccccccccccccccccccccccc
Confidence 0001111111 223468999999932 22445567889999888765433211 11234555
Q ss_pred HHHHhCCCCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhccCC
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (624)
.+....+...++++|.||.|+.+... . ..++. ...+.+|+.+....+.++.+.+
T Consensus 96 ~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 96 EIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFA----KELGVPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp HHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHH----HHTTSEEEEEBTTTTTTHHHHH
T ss_pred cccccccccccceeeeccccccccccchhhHHHHHH----HHhCCEEEEEECCCCCCHHHHH
Confidence 66666666689999999999987332 1 22222 2344788888877766665443
No 196
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.08 E-value=8.2e-10 Score=100.54 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=57.1
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH----HHHHHhCCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI----KLAREVDPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~----~l~~~~d~~~~rti~Vlt 211 (624)
..+++||+||.... ......++..+|++++++ +++......... .........+.++++|+|
T Consensus 45 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVY-DVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 57899999995542 223366788999877655 444433333222 122334556899999999
Q ss_pred cCcccCccccHHHH-HhCcccccCCCeeEEEeCChhhh
Q 006958 212 KLDLMDKGTNALEV-LEGRSYRLQHPWVGIVNRSQADI 248 (624)
Q Consensus 212 K~D~~~~~~~~~~~-l~~~~~~l~~g~~~v~~~s~~~~ 248 (624)
|+|+.......... ..........+++.+.+....++
T Consensus 111 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 111 KIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred ccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 99998654322111 11111222345666666655544
No 197
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.05 E-value=1.2e-09 Score=106.56 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=56.0
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI--ATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~--~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..++||||||. +.+...+..++..+|++++++....... .+.+.+..+.... ..++|+|+||+
T Consensus 83 ~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEch
Confidence 57899999992 2234445666778898777554432122 2223333333221 24689999999
Q ss_pred cccCccc--cHHHHHhCcc---cccCCCeeEEEeCChhhhccCCcHH
Q 006958 214 DLMDKGT--NALEVLEGRS---YRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 214 D~~~~~~--~~~~~l~~~~---~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
|+.+... ...+.++... ......++.+++.++.+++++++.+
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l 194 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYI 194 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHH
Confidence 9975321 1111111100 1112346666776666665544433
No 198
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.05 E-value=1.2e-09 Score=110.85 Aligned_cols=136 Identities=14% Similarity=0.253 Sum_probs=77.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|+++|.++||||||+|+|+... |...+... +.-.. ..+....|+.... ..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~-v~~~~------------~~~~t~~D~~~~e------~~--- 54 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG------GAIREAGA-VKARK------------SRKHATSDWMEIE------KQ--- 54 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc------CCcccCce-ecccc------------cCCCccCCCcHHH------Hh---
Confidence 469999999999999999998653 22222220 00000 0011222332211 11
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
.+..++.....++ . +...+.||||||..+ +...+..+++.+|++|+++ ++......+. ..+
T Consensus 55 -rg~si~~~~~~~~--~-~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~IlVv-da~~g~~~~~-~~i 115 (267)
T cd04169 55 -RGISVTSSVMQFE--Y-RDCVINLLDTPGHED-------------FSEDTYRTLTAVDSAVMVI-DAAKGVEPQT-RKL 115 (267)
T ss_pred -CCCCeEEEEEEEe--e-CCEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEE-ECCCCccHHH-HHH
Confidence 1112222333332 2 346899999999532 2344667888999887755 4544443322 224
Q ss_pred HHHhCCCCCceEEEeccCcccCc
Q 006958 196 AREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+.....+.|+++++||+|+...
T Consensus 116 ~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 116 FEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHhcCCCEEEEEECCccCCC
Confidence 44445567899999999998654
No 199
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.04 E-value=7.1e-10 Score=110.72 Aligned_cols=69 Identities=22% Similarity=0.188 Sum_probs=47.1
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||..+ +...+..+++.+|++|+++ ++..+...+. ..+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDTPG~~~-------------f~~~~~~~l~~aD~~IlVv-d~~~g~~~~~-~~~~~~~~~~~~P~iivvNK~D 127 (237)
T cd04168 63 DTKVNLIDTPGHMD-------------FIAEVERSLSVLDGAILVI-SAVEGVQAQT-RILWRLLRKLNIPTIIFVNKID 127 (237)
T ss_pred CEEEEEEeCCCccc-------------hHHHHHHHHHHhCeEEEEE-eCCCCCCHHH-HHHHHHHHHcCCCEEEEEECcc
Confidence 46799999999643 2344677889999887755 4554443322 2244444456889999999999
Q ss_pred ccCc
Q 006958 215 LMDK 218 (624)
Q Consensus 215 ~~~~ 218 (624)
+...
T Consensus 128 ~~~a 131 (237)
T cd04168 128 RAGA 131 (237)
T ss_pred ccCC
Confidence 8743
No 200
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.04 E-value=2.1e-09 Score=104.87 Aligned_cols=118 Identities=16% Similarity=0.264 Sum_probs=71.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
|.|+++|+++||||||++.|.+..+-+.- +|-.|....
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~---~s~~~~~~~--------------------------------------- 38 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV---TSIEPNVAT--------------------------------------- 38 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc---CcEeecceE---------------------------------------
Confidence 78999999999999999999988652111 111110000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCC-CEEEEEEecCCCccccHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP-SCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~-~~iiL~V~~a~~d~~~~~~~~ 194 (624)
..+.. ......+.||||||.. .++.+...|++.+ +++|+++...+..-...++..
T Consensus 39 ----------~~~~~-~~~~~~~~l~D~pG~~-------------~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~ 94 (203)
T cd04105 39 ----------FILNS-EGKGKKFRLVDVPGHP-------------KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAE 94 (203)
T ss_pred ----------EEeec-CCCCceEEEEECCCCH-------------HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHH
Confidence 00000 0123568999999933 3466677888888 988887765543111112111
Q ss_pred ----HHHH--hCCCCCceEEEeccCcccCcc
Q 006958 195 ----LARE--VDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 195 ----l~~~--~d~~~~rti~VltK~D~~~~~ 219 (624)
+... ....+.|+++|+||.|+....
T Consensus 95 ~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 95 FLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 1111 223579999999999987543
No 201
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.03 E-value=1.2e-09 Score=122.82 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=77.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+-.|+++|+.++|||||+++|+... +..++... +..+.|.... ++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~--------------------~~~~~D~~~~--------Ere 48 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREM--------------------REQVLDSMDL--------ERE 48 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCccccc--------------------cccccCCChH--------HHh
Confidence 4579999999999999999999753 32222210 0001111110 111
Q ss_pred hCCCCCcccccEEEEEe--cCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 115 TGKSKQISNIPIQLSIY--SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~--~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
. +..+....+.+... +.....++||||||.. .+...+..|++.+|++||++ +++.....+..
T Consensus 49 r--GiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-------------dF~~~v~~~l~~aD~aILVv-Dat~g~~~qt~ 112 (595)
T TIGR01393 49 R--GITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-------------DFSYEVSRSLAACEGALLLV-DAAQGIEAQTL 112 (595)
T ss_pred c--CCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEEEEe-cCCCCCCHhHH
Confidence 1 22233344444443 2223578999999943 24556778999999877755 55554443332
Q ss_pred HHHHHHhCCCCCceEEEeccCcccC
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
..+.... ..+.++|+|+||+|+.+
T Consensus 113 ~~~~~~~-~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 113 ANVYLAL-ENDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHH-HcCCCEEEEEECcCCCc
Confidence 2121112 24679999999999864
No 202
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.02 E-value=8.8e-10 Score=115.25 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=103.2
Q ss_pred cchhHHHHHHHHHHHHHHhcc---CCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEe
Q 006958 3 TMTSLIGLINKIQRACTVLGD---HGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQ 79 (624)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~---~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~ 79 (624)
|...+.-++.+.++.+..+.. +-.++|+....-+++.|||-||+||||++|.++..+. . +-.+|
T Consensus 133 Algrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----e-vqpYa------- 199 (620)
T KOG1490|consen 133 ALGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----E-VQPYA------- 199 (620)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----c-cCCcc-------
Confidence 556677777777777766653 3337887778889999999999999999998887654 1 11122
Q ss_pred CCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHH
Q 006958 80 TEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIV 159 (624)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~ 159 (624)
|+...+.+.-.......+.++|||||.+.+.. ..
T Consensus 200 -----------------------------------------FTTksL~vGH~dykYlrwQViDTPGILD~plE-----dr 233 (620)
T KOG1490|consen 200 -----------------------------------------FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE-----DR 233 (620)
T ss_pred -----------------------------------------cccchhhhhhhhhheeeeeecCCccccCcchh-----hh
Confidence 11111222222334457899999999875543 23
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCC--ccccHHHHHHHHHhCCC--CCceEEEeccCcccCcc
Q 006958 160 EDIENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPT--GERTFGVLTKLDLMDKG 219 (624)
Q Consensus 160 ~~i~~~~~~yi~~~~~iiL~V~~a~~--d~~~~~~~~l~~~~d~~--~~rti~VltK~D~~~~~ 219 (624)
..++-.....+.+-.+.+|++.+-+. +.+..+-.++-..+.|. .+++|+|+||+|.+.+.
T Consensus 234 N~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 234 NIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred hHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 33344444455555566777776554 34444445566666664 68899999999998765
No 203
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=9.6e-10 Score=96.75 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=85.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|.|+|+.|+||+|++-+..|..|-| ..++..
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~---afvsTv--------------------------------------------- 54 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTS---AFVSTV--------------------------------------------- 54 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccc---ceeeee---------------------------------------------
Confidence 79999999999999999999998833 111111
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~~ 194 (624)
|+..+...+ ..+....++.+|||.| ++..+.++..|++.++++||+....|.. .+.++|..
T Consensus 55 ---GidFKvKTv-yr~~kRiklQiwDTag-------------qEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~t 117 (193)
T KOG0093|consen 55 ---GIDFKVKTV-YRSDKRIKLQIWDTAG-------------QERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWIT 117 (193)
T ss_pred ---eeeEEEeEe-eecccEEEEEEEeccc-------------chhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHH
Confidence 111111111 1122336789999999 5667899999999999999998777653 23356666
Q ss_pred HHHHhCCCCCceEEEeccCcccCcc
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.++.+.....++|+|.||||+-++.
T Consensus 118 qIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 118 QIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred HheeeeccCceEEEEecccCCccce
Confidence 6777777789999999999997654
No 204
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.02 E-value=1.6e-09 Score=121.98 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--HHHHHHHhCCCCCc-eEEE
Q 006958 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--AIKLAREVDPTGER-TFGV 209 (624)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~--~~~l~~~~d~~~~r-ti~V 209 (624)
++...++||||||. ...+.+| ...+..+|.++|+ ++++.++..++ .+.+++. .+.+ .|+|
T Consensus 48 ~~g~~i~~IDtPGh------------e~fi~~m-~~g~~~~D~~lLV-Vda~eg~~~qT~ehl~il~~---lgi~~iIVV 110 (614)
T PRK10512 48 PDGRVLGFIDVPGH------------EKFLSNM-LAGVGGIDHALLV-VACDDGVMAQTREHLAILQL---TGNPMLTVA 110 (614)
T ss_pred CCCcEEEEEECCCH------------HHHHHHH-HHHhhcCCEEEEE-EECCCCCcHHHHHHHHHHHH---cCCCeEEEE
Confidence 34456899999993 2223444 4567889987764 46665554433 3333333 3555 5799
Q ss_pred eccCcccCccc--c----HHHHHhCccccc-CCCeeEEEeCChhhhccCCcHHHHH
Q 006958 210 LTKLDLMDKGT--N----ALEVLEGRSYRL-QHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 210 ltK~D~~~~~~--~----~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
+||+|+.++.. . +.+.+.+ ..+ ..+++.+++.++.+++.+++.+...
T Consensus 111 lNKiDlv~~~~~~~v~~ei~~~l~~--~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 111 LTKADRVDEARIAEVRRQVKAVLRE--YGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHh--cCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 99999986421 1 1122221 111 2457777888777776666655543
No 205
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.00 E-value=2.7e-09 Score=105.33 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=71.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|||++++|||||++++++..| |.... +|-..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~-pTi~~-------------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYV-PTVFE-------------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccC-Ccccc--------------------------------------------
Confidence 689999999999999999999875 43221 11110
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAI 193 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~~ 193 (624)
.+ ...+.+. .....|.|||||| .+.+..+...|+.++|++|+|+...+.+ +.. ..|.
T Consensus 37 ---~~---~~~~~~~-~~~v~L~iwDt~G-------------~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~ 96 (222)
T cd04173 37 ---NY---TASFEID-KRRIELNMWDTSG-------------SSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQ 96 (222)
T ss_pred ---ce---EEEEEEC-CEEEEEEEEeCCC-------------cHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 0112221 2235789999999 3344666677899999887766544321 111 1222
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...+...+ +.|+|+|.||+|+.+.
T Consensus 97 ~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 97 GETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHhhCC-CCCEEEEEECcccccc
Confidence 23333333 6899999999999653
No 206
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.00 E-value=2e-09 Score=106.13 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...+.||||||... +...+..++..+|+++|+| ++..+...+. ..+++.....+.|.|+|+||+|
T Consensus 72 ~~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~ilVv-D~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVD-------------FSSEVTAALRLCDGALVVV-DAVEGVCVQT-ETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccc-------------cHHHHHHHHHhcCeeEEEE-ECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 46789999999543 3456788899999887755 5555444332 3355555556789999999999
Q ss_pred cc
Q 006958 215 LM 216 (624)
Q Consensus 215 ~~ 216 (624)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 207
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.98 E-value=2.7e-09 Score=105.04 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=74.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|+|+.++|||||+++|++.... .++.. . .. ..... +.+... . +..
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~------~~~~~---~--~~---~~~~~--------~~d~~~--~------e~~-- 49 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHD------LTPSG---K--DG---WKPLR--------YTDIRK--D------EQE-- 49 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC------Ccccc---c--cc---CCcee--------ECCCCH--H------HHH--
Confidence 5899999999999999999987541 11100 0 00 00000 000000 0 000
Q ss_pred CCCCcccccEEEEEec--CCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 117 KSKQISNIPIQLSIYS--PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~--~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
.+..+....+.+.... .....+++|||||..+ +...+..++..+|++++++. +....... ...
T Consensus 50 ~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~~llVvD-~~~~~~~~-~~~ 114 (213)
T cd04167 50 RGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVN-------------FMDEVAAALRLSDGVVLVVD-VVEGVTSN-TER 114 (213)
T ss_pred cCccccccceeEEEEcCCCCEEEEEEEECCCCcc-------------hHHHHHHHHHhCCEEEEEEE-CCCCCCHH-HHH
Confidence 1122223344443332 2235789999999543 24456788899998877664 44333222 222
Q ss_pred HHHHhCCCCCceEEEeccCccc
Q 006958 195 LAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~ 216 (624)
+.+.+...+.+.++|+||+|++
T Consensus 115 ~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 115 LIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHcCCCEEEEEECcccC
Confidence 3344444568999999999986
No 208
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.98 E-value=3.4e-09 Score=115.94 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=78.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
.+|+|||.+|+||||++|+|+|...+..+.. .+|..+..+.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 3799999999999999999999976554421 2332221111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCC---cccc
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ---DIAT 189 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~---d~~~ 189 (624)
+ ..+...+.||||||+...... +...+.+...+..++. .+|+ +|+|...+. +...
T Consensus 161 -~---------------~idG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDV-VLlV~RLd~~~~D~eD 220 (763)
T TIGR00993 161 -G---------------LVQGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDI-VLYVDRLDMQTRDSND 220 (763)
T ss_pred -E---------------EECCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCE-EEEEEeCCCccccHHH
Confidence 0 012357999999999975332 2234455566666776 4785 555655432 2222
Q ss_pred HHHHHHHHHhCCC--CCceEEEeccCcccCc
Q 006958 190 SDAIKLAREVDPT--GERTFGVLTKLDLMDK 218 (624)
Q Consensus 190 ~~~~~l~~~~d~~--~~rti~VltK~D~~~~ 218 (624)
..+++.+..+-.. -..+|+|+|+.|..++
T Consensus 221 ~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 221 LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 3345555444322 4789999999999864
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.97 E-value=5.6e-09 Score=117.03 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
+.++||||||. +.+..+...++..+|++||++ +++.++..+.. ..+..+...+.|+++|+||+|+
T Consensus 71 ~~i~~iDTPG~-------------e~f~~~~~~~~~~aD~~IlVv-Da~~g~~~qt~-e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGH-------------EAFTNLRKRGGALADIAILVV-DINEGFQPQTI-EAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCCh-------------HHHHHHHHHhHhhCCEEEEEE-ECCCCCCHhHH-HHHHHHHHcCCCEEEEEECcCC
Confidence 35899999993 344566667888999877755 55544333322 2233334457899999999998
Q ss_pred c
Q 006958 216 M 216 (624)
Q Consensus 216 ~ 216 (624)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 210
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.96 E-value=4.1e-09 Score=107.54 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...+++|||||..+ +...+..++..+|++++++ +++.+...+ ...+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDtPG~~~-------------f~~~~~~~l~~aD~~i~Vv-d~~~g~~~~-~~~~~~~~~~~~~p~iivvNK~D 127 (268)
T cd04170 63 GHKINLIDTPGYAD-------------FVGETRAALRAADAALVVV-SAQSGVEVG-TEKLWEFADEAGIPRIIFINKMD 127 (268)
T ss_pred CEEEEEEECcCHHH-------------HHHHHHHHHHHCCEEEEEE-eCCCCCCHH-HHHHHHHHHHcCCCEEEEEECCc
Confidence 46799999999532 2345677888999877655 444433322 22244445556889999999999
Q ss_pred ccCc
Q 006958 215 LMDK 218 (624)
Q Consensus 215 ~~~~ 218 (624)
+...
T Consensus 128 ~~~~ 131 (268)
T cd04170 128 RERA 131 (268)
T ss_pred cCCC
Confidence 8754
No 211
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.96 E-value=9.5e-10 Score=98.22 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=98.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-.-.|.++|+.++||||||-+++...|-|-.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~------------------------------------------------- 40 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLH------------------------------------------------- 40 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccC-------------------------------------------------
Confidence 3468999999999999999999988772211
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~~~ 192 (624)
..+.|+..+...+.+.+.. ..|.||||+| ++.++.++-+|.+.+..|||+..-...| +.+-+
T Consensus 41 --~~tIGvDFkvk~m~vdg~~-~KlaiWDTAG-------------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd- 103 (209)
T KOG0080|consen 41 --PTTIGVDFKVKVMQVDGKR-LKLAIWDTAG-------------QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLD- 103 (209)
T ss_pred --CceeeeeEEEEEEEEcCce-EEEEEEeccc-------------hHhhhccCHhHhccCceeEEEEEccchhhHHhHH-
Confidence 1123344455555555543 6799999999 8899999999999999999875433322 22221
Q ss_pred HHHHHHhCCC----CCceEEEeccCcccCccccHHHHHhCccc--ccCCCeeEEEeCChhhhccCCcHHHHHHHHHhHh
Q 006958 193 IKLAREVDPT----GERTFGVLTKLDLMDKGTNALEVLEGRSY--RLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265 (624)
Q Consensus 193 ~~l~~~~d~~----~~rti~VltK~D~~~~~~~~~~~l~~~~~--~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f 265 (624)
.++++++.. ..-.++|.||+|.-.+. ..+--+|... ..+.-|+...++.-++....++.+.....|.+.|
T Consensus 104 -~W~~Eld~Ystn~diikmlVgNKiDkes~R--~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~l 179 (209)
T KOG0080|consen 104 -IWLKELDLYSTNPDIIKMLVGNKIDKESER--VVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPSL 179 (209)
T ss_pred -HHHHHHHhhcCCccHhHhhhcccccchhcc--cccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcch
Confidence 245555532 23457899999965321 1111112111 2223355555555455444444444444444433
No 212
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.95 E-value=5.2e-09 Score=117.73 Aligned_cols=134 Identities=19% Similarity=0.283 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..-.|+++|+.++|||||+++|+... |..++.-. +..+.|.... ++
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~--------------------~~~~lD~~~~--------Er 51 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM--------------------KAQVLDSMDL--------ER 51 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc--------------------ccccccCchH--------Hh
Confidence 45689999999999999999998643 22222110 0011111111 11
Q ss_pred hhCCCCCcccccEEEEEec--CCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYS--PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~--~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
..| ..+....+.+.... .....++||||||..+ +...+.++++.+|++||+| +++.+...+.
T Consensus 52 erG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d-------------F~~~v~~sl~~aD~aILVV-Das~gv~~qt 115 (600)
T PRK05433 52 ERG--ITIKAQAVRLNYKAKDGETYILNLIDTPGHVD-------------FSYEVSRSLAACEGALLVV-DASQGVEAQT 115 (600)
T ss_pred hcC--CcccccEEEEEEEccCCCcEEEEEEECCCcHH-------------HHHHHHHHHHHCCEEEEEE-ECCCCCCHHH
Confidence 111 22333444444432 2245789999999543 3555778899999877755 5555444433
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...+ ......+.++|+|+||+|+...
T Consensus 116 ~~~~-~~~~~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 116 LANV-YLALENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHH-HHHHHCCCCEEEEEECCCCCcc
Confidence 2212 2222347899999999998643
No 213
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.95 E-value=7.3e-09 Score=102.16 Aligned_cols=118 Identities=25% Similarity=0.362 Sum_probs=82.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-+|+|+|+.|||||||++++.+..| +.+.. +.+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 4899999999999999999999875 33222 1222221111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---ccccH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIATS 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~---d~~~~ 190 (624)
....+...+.+|||+| ++.++.+...|...++++++++..... +....
T Consensus 48 ----------------~~~~~~~~~~~~Dt~g-------------q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~ 98 (219)
T COG1100 48 ----------------EPYRRNIKLQLWDTAG-------------QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTE 98 (219)
T ss_pred ----------------EeCCCEEEEEeecCCC-------------HHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHH
Confidence 0011134589999999 667788899999999998887765542 23334
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (624)
.+...++...+.+.+++.|.||+|+.....
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHhCCCCceEEEEecccccccchh
Confidence 455555666666789999999999987654
No 214
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.95 E-value=2.5e-09 Score=98.06 Aligned_cols=154 Identities=16% Similarity=0.278 Sum_probs=93.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.|-.|++.|++|+|||||+|.++..+|.- + | ..
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~-------------q---------y-------------------------ka 40 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQ-------------Q---------Y-------------------------KA 40 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHH-------------H---------h-------------------------cc
Confidence 57799999999999999999999988710 0 0 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--cccc-H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIAT-S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~--d~~~-~ 190 (624)
..| ..|-.+.+ .|. .....|.||||.| ++.++++-..|.+.+||.+|+. +.+. .+.+ .
T Consensus 41 TIg--adFltKev--~Vd-~~~vtlQiWDTAG-------------QERFqsLg~aFYRgaDcCvlvy-dv~~~~Sfe~L~ 101 (210)
T KOG0394|consen 41 TIG--ADFLTKEV--QVD-DRSVTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVY-DVNNPKSFENLE 101 (210)
T ss_pred ccc--hhheeeEE--EEc-CeEEEEEEEeccc-------------HHHhhhcccceecCCceEEEEe-ecCChhhhccHH
Confidence 001 11222222 232 2346799999999 8888998888999999988863 3332 2222 2
Q ss_pred HHHH-HHHHh---CCCCCceEEEeccCcccCcccc---HHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 191 DAIK-LAREV---DPTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 191 ~~~~-l~~~~---d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
.|.+ ++.+. +|..-|.|++.||+|+-..... ..+....-...-..+|+.+++..+.++.+-+.
T Consensus 102 ~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe 171 (210)
T KOG0394|consen 102 NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFE 171 (210)
T ss_pred HHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHH
Confidence 2322 44544 4566789999999999663211 11111111123346788777666555444333
No 215
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.3e-09 Score=97.46 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=82.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-+-.++++|+.++|||+||-..+...|-|.-. +.+-
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-------~TiG------------------------------------- 40 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-------LTIG------------------------------------- 40 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc-------ceee-------------------------------------
Confidence 35579999999999999999999999844322 1111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC--CccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN--QDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~--~d~~~~~ 191 (624)
+..-.-.+.|.+ ....|.+|||.| ++.+++++.+|.+.+-..+||..-.+ +......
T Consensus 41 -------vefg~r~~~id~-k~IKlqiwDtaG-------------qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~ 99 (216)
T KOG0098|consen 41 -------VEFGARMVTIDG-KQIKLQIWDTAG-------------QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTS 99 (216)
T ss_pred -------eeeceeEEEEcC-ceEEEEEEecCC-------------cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHH
Confidence 111111122222 224688999999 78889999999999998888653332 2334456
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
|+.-+++.....--++++.||+|+....
T Consensus 100 wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 100 WLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 6766777655567788889999998654
No 216
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.93 E-value=1.2e-09 Score=104.08 Aligned_cols=150 Identities=17% Similarity=0.283 Sum_probs=86.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+--+|+++|.++|||||+++.|.+..+ .+-.| |
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~-------~~~~p-------T--------------------------------- 45 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEI-------SETIP-------T--------------------------------- 45 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSE-------EEEEE-------E---------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccc-------cccCc-------c---------------------------------
Confidence 446899999999999999999997654 11122 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.|+.... +.. +...++++|++|=. .++.+...|++++|++|++|++++.+ .-.++.
T Consensus 46 -----~g~~~~~--i~~---~~~~~~~~d~gG~~-------------~~~~~w~~y~~~~~~iIfVvDssd~~-~l~e~~ 101 (175)
T PF00025_consen 46 -----IGFNIEE--IKY---KGYSLTIWDLGGQE-------------SFRPLWKSYFQNADGIIFVVDSSDPE-RLQEAK 101 (175)
T ss_dssp -----SSEEEEE--EEE---TTEEEEEEEESSSG-------------GGGGGGGGGHTTESEEEEEEETTGGG-GHHHHH
T ss_pred -----cccccce--eee---CcEEEEEEeccccc-------------cccccceeeccccceeEEEEecccce-eecccc
Confidence 0111111 111 23579999999932 23566788999999988877655432 223333
Q ss_pred HHHHHh-C---CCCCceEEEeccCcccCccc--cHHHHHhCcccccCCCeeEE--EeCChhhhccCCcH
Q 006958 194 KLAREV-D---PTGERTFGVLTKLDLMDKGT--NALEVLEGRSYRLQHPWVGI--VNRSQADINKNVDM 254 (624)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v--~~~s~~~~~~~~~~ 254 (624)
..+..+ . -.+.|.++++||.|+.+... +..+.+.-.....+..|... .+.+++++.+.+++
T Consensus 102 ~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~W 170 (175)
T PF00025_consen 102 EELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEW 170 (175)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHH
T ss_pred cchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHH
Confidence 333322 2 24689999999999876432 23333332222223455433 33344454444433
No 217
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.93 E-value=7.8e-09 Score=112.59 Aligned_cols=141 Identities=20% Similarity=0.319 Sum_probs=72.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccc-cEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRR-PLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..|+++|..++|||||+++|++.. +..++. .-.++ +.. ...+..-..+.-+.+...++ +
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~------g~i~~~~~~~~~--~~~---------~~~g~~~~~~~~~~D~~~~E--r- 66 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYET------GAIDEHIIEELR--EEA---------KEKGKESFKFAWVMDRLKEE--R- 66 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHc------CCcCHHHHHHHH--HHH---------HhcCCcccchhhhhccCHhH--h-
Confidence 479999999999999999999764 222111 00000 000 00000000011111111111 1
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--ccccH--
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATS-- 190 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~--d~~~~-- 190 (624)
..|+|-+.....+.. +...++||||||..+ ....+ ...+..+|++++++ +++. +...+
T Consensus 67 ---~rG~T~d~~~~~~~~-~~~~i~liDtpG~~~------------~~~~~-~~~~~~aD~~ilVv-Da~~~~~~~~~~~ 128 (425)
T PRK12317 67 ---ERGVTIDLAHKKFET-DKYYFTIVDCPGHRD------------FVKNM-ITGASQADAAVLVV-AADDAGGVMPQTR 128 (425)
T ss_pred ---hcCccceeeeEEEec-CCeEEEEEECCCccc------------chhhH-hhchhcCCEEEEEE-EcccCCCCCcchH
Confidence 234454544444443 446899999999422 11222 34467899877755 5554 33332
Q ss_pred HHHHHHHHhCCCCC-ceEEEeccCcccC
Q 006958 191 DAIKLAREVDPTGE-RTFGVLTKLDLMD 217 (624)
Q Consensus 191 ~~~~l~~~~d~~~~-rti~VltK~D~~~ 217 (624)
..+.+++. .+. +.++|+||+|+.+
T Consensus 129 ~~~~~~~~---~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 129 EHVFLART---LGINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHHHHH---cCCCeEEEEEEcccccc
Confidence 23334443 343 6899999999975
No 218
>PLN00023 GTP-binding protein; Provisional
Probab=98.90 E-value=5e-09 Score=107.25 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=46.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHHHHHHHhCC------------
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAIKLAREVDP------------ 201 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~~l~~~~d~------------ 201 (624)
..+.||||+| .+.++.+...|+++++++|+|+...+.. .....|+..+.....
T Consensus 83 v~LqIWDTAG-------------qErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~ 149 (334)
T PLN00023 83 FFVELWDVSG-------------HERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGG 149 (334)
T ss_pred EEEEEEECCC-------------ChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 4589999999 4556788889999999988866543321 111233433333311
Q ss_pred CCCceEEEeccCcccCc
Q 006958 202 TGERTFGVLTKLDLMDK 218 (624)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (624)
...++++|.||+|+.+.
T Consensus 150 ~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 150 LPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCcEEEEEECcccccc
Confidence 13689999999999654
No 219
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.90 E-value=4.4e-09 Score=105.97 Aligned_cols=125 Identities=24% Similarity=0.286 Sum_probs=76.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
-|.+||-|||||||||++++..+-=-.+...+|-.| .| |
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~P---nL--------------------------------------G 199 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVP---NL--------------------------------------G 199 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccC---cc--------------------------------------c
Confidence 477999999999999999998863222233555555 11 1
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc--ccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI--ATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~--~~~~~~~ 194 (624)
.+.+ .....+++-|.||++..++.+-.- -.-..+.|+++..++.+++-+..+- ..++...
T Consensus 200 ----------vV~~--~~~~sfv~ADIPGLIEGAs~G~GL------G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~ 261 (369)
T COG0536 200 ----------VVRV--DGGESFVVADIPGLIEGASEGVGL------GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQT 261 (369)
T ss_pred ----------EEEe--cCCCcEEEecCcccccccccCCCc------cHHHHHHHHhhheeEEEEecCcccCCCHHHHHHH
Confidence 1112 334569999999999988764221 2224566778886666554443331 1122222
Q ss_pred HHHHh---CC--CCCceEEEeccCcccCccc
Q 006958 195 LAREV---DP--TGERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 195 l~~~~---d~--~~~rti~VltK~D~~~~~~ 220 (624)
+..++ .+ ..++.++|+||+|+....+
T Consensus 262 i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e 292 (369)
T COG0536 262 IRNELEKYSPKLAEKPRIVVLNKIDLPLDEE 292 (369)
T ss_pred HHHHHHHhhHHhccCceEEEEeccCCCcCHH
Confidence 33333 22 3689999999999665443
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.89 E-value=1.1e-08 Score=100.99 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=47.7
Q ss_pred CCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC------ccc--cH
Q 006958 119 KQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ------DIA--TS 190 (624)
Q Consensus 119 ~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~------d~~--~~ 190 (624)
+++|.+.....+.. +...+++|||||... +...+..++..+|++|++|..... +.. ..
T Consensus 61 rg~T~d~~~~~~~~-~~~~i~liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~ 126 (219)
T cd01883 61 RGVTIDVGLAKFET-EKYRFTILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR 126 (219)
T ss_pred CccCeecceEEEee-CCeEEEEEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchH
Confidence 34555554444443 447899999999422 123344567789987775544332 121 12
Q ss_pred HHHHHHHHhCCCC-CceEEEeccCcccC
Q 006958 191 DAIKLAREVDPTG-ERTFGVLTKLDLMD 217 (624)
Q Consensus 191 ~~~~l~~~~d~~~-~rti~VltK~D~~~ 217 (624)
....++.. .+ .|+|+|+||+|+..
T Consensus 127 ~~~~~~~~---~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 127 EHALLART---LGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHH---cCCCeEEEEEEcccccc
Confidence 22223332 23 57889999999983
No 221
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.89 E-value=7.3e-09 Score=100.41 Aligned_cols=66 Identities=24% Similarity=0.147 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--HHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--DAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~--~~~~l~~~~d~~~~rti~VltK 212 (624)
..|.||||||... .+...|++++|++|++....+.. +... .|...++...+ +.|+|+|.||
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 5789999999421 12345889999888765443321 2221 24444444433 6799999999
Q ss_pred CcccC
Q 006958 213 LDLMD 217 (624)
Q Consensus 213 ~D~~~ 217 (624)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99864
No 222
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.89 E-value=6.9e-09 Score=99.90 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=40.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.++||||.... ..+...++.++|+++++..-.+.+ +.. ..|+..++...+ ..|.++|.||
T Consensus 49 ~~l~i~Dt~g~~~~-------------~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK 114 (187)
T cd04129 49 VQLALWDTAGQEEY-------------ERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLK 114 (187)
T ss_pred EEEEEEECCCChhc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 46889999995322 112223668899877654432221 111 124444444444 4899999999
Q ss_pred CcccC
Q 006958 213 LDLMD 217 (624)
Q Consensus 213 ~D~~~ 217 (624)
+|+.+
T Consensus 115 ~Dl~~ 119 (187)
T cd04129 115 KDLRQ 119 (187)
T ss_pred hhhhh
Confidence 99864
No 223
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.88 E-value=6.2e-09 Score=105.34 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=61.6
Q ss_pred EEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGK 117 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~ 117 (624)
|++||.||||||||+|+|+|.+.-+.....||+-|..-.+.-. +.. ++.+ ....+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~-------------d~r---~~~l--------~~~~~~ 56 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVP-------------DER---LDKL--------AEIVKP 56 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEec-------------cch---hhhH--------HHHhCC
Confidence 5799999999999999999998644455678877744332110 000 0000 001010
Q ss_pred CCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC
Q 006958 118 SKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN 184 (624)
Q Consensus 118 ~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~ 184 (624)
.+ + ....+.++|+||++..... .+.+.+...+.++++|+++++| ++.
T Consensus 57 --------~k--~---~~~~i~lvD~pGl~~~a~~------~~glg~~fL~~i~~~D~li~VV-~~f 103 (274)
T cd01900 57 --------KK--I---VPATIEFVDIAGLVKGASK------GEGLGNKFLSHIREVDAIAHVV-RCF 103 (274)
T ss_pred --------ce--e---eeeEEEEEECCCcCCCCch------hhHHHHHHHHHHHhCCEEEEEE-eCc
Confidence 00 0 0135899999999975543 2333445567788999877654 443
No 224
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.88 E-value=6.2e-09 Score=93.34 Aligned_cols=153 Identities=23% Similarity=0.298 Sum_probs=95.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-+++|+|+.-+||||||..++..+| |-=+ -|++-. ||- .++.
T Consensus 9 frlivigdstvgkssll~~ft~gkf-aels-----dptvgv----------------------dff----------arli 50 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPTVGV----------------------DFF----------ARLI 50 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCccch----------------------HHH----------HHHH
Confidence 3789999999999999999998876 2111 121000 110 1111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAI 193 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~ 193 (624)
++.......|.||||.| ++.+++++++|.+++-.++|+..-.|.. -....|+
T Consensus 51 -------------e~~pg~riklqlwdtag-------------qerfrsitksyyrnsvgvllvyditnr~sfehv~~w~ 104 (213)
T KOG0091|consen 51 -------------ELRPGYRIKLQLWDTAG-------------QERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWV 104 (213)
T ss_pred -------------hcCCCcEEEEEEeeccc-------------hHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHH
Confidence 12222345799999999 8899999999999998876655444421 1223444
Q ss_pred HHHHH-hC-CCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 194 KLARE-VD-PTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 194 ~l~~~-~d-~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
.-|.. +. |...-..+|.+|+|+..... ++.++ ...++.-|+..+.+++.+.++-..++.
T Consensus 105 ~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEkl----Aa~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 105 KEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKL----AASHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred HHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHH----HHhcCceEEEecccCCCcHHHHHHHHH
Confidence 43332 33 55555678899999985432 12222 234566788888888877766555444
No 225
>PTZ00258 GTP-binding protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=108.02 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-.+|++||.||+|||||+|+|+|...-......||+-|..-.+.-. +..+ ..+ ..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~-------------d~r~---~~l--------~~ 75 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP-------------DERF---DWL--------CK 75 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc-------------cchh---hHH--------HH
Confidence 45699999999999999999999987644455678888855442111 0000 000 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS 181 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~ 181 (624)
..+. ......++.|+||||++..... .+.+.+.+...++++|+|+++|.
T Consensus 76 ~~~~-------------~~~~~aqi~lvDtpGLv~ga~~------g~gLg~~fL~~Ir~aD~il~VVd 124 (390)
T PTZ00258 76 HFKP-------------KSIVPAQLDITDIAGLVKGASE------GEGLGNAFLSHIRAVDGIYHVVR 124 (390)
T ss_pred HcCC-------------cccCCCCeEEEECCCcCcCCcc------hhHHHHHHHHHHHHCCEEEEEEe
Confidence 1110 0001246899999999975543 22334455677889998777554
No 226
>CHL00071 tufA elongation factor Tu
Probab=98.86 E-value=1.2e-08 Score=110.39 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|+++|..++|||||+++|++..- .+..+.- ..|+ ..|.. . .+
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~-----~~~~~~~-----------~~~~---------~~d~~--~------~e--- 56 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLA-----AKGGAKA-----------KKYD---------EIDSA--P------EE--- 56 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC-----ccccccc-----------cccc---------cccCC--h------hh---
Confidence 4699999999999999999998531 0000000 0000 00000 0 01
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
...+++-+.....+. .+..+++||||||. .+.+..+ ...+..+|+++| |+++..+...++. ..
T Consensus 57 -~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh------------~~~~~~~-~~~~~~~D~~il-Vvda~~g~~~qt~-~~ 119 (409)
T CHL00071 57 -KARGITINTAHVEYE-TENRHYAHVDCPGH------------ADYVKNM-ITGAAQMDGAIL-VVSAADGPMPQTK-EH 119 (409)
T ss_pred -hcCCEeEEccEEEEc-cCCeEEEEEECCCh------------HHHHHHH-HHHHHhCCEEEE-EEECCCCCcHHHH-HH
Confidence 112344333333332 34467899999993 2233444 455678997776 5566655544433 24
Q ss_pred HHHhCCCCCc-eEEEeccCcccCcc
Q 006958 196 AREVDPTGER-TFGVLTKLDLMDKG 219 (624)
Q Consensus 196 ~~~~d~~~~r-ti~VltK~D~~~~~ 219 (624)
+..+...+.| .|+|+||+|+.+..
T Consensus 120 ~~~~~~~g~~~iIvvvNK~D~~~~~ 144 (409)
T CHL00071 120 ILLAKQVGVPNIVVFLNKEDQVDDE 144 (409)
T ss_pred HHHHHHcCCCEEEEEEEccCCCCHH
Confidence 4445555777 67899999998643
No 227
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.85 E-value=2.1e-08 Score=90.32 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=99.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-+|.++|--||||||+++++.|.+. +.--+|..-
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf------------------------------------------- 50 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGF------------------------------------------- 50 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccce-------------------------------------------
Confidence 4899999999999999999999762 111122211
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
.-+. +++ +...++++|.-| +..+++...+|.+..|++|+||.++. ....++....
T Consensus 51 ------~Ikt--l~~---~~~~L~iwDvGG-------------q~~lr~~W~nYfestdglIwvvDssD-~~r~~e~~~~ 105 (185)
T KOG0073|consen 51 ------QIKT--LEY---KGYTLNIWDVGG-------------QKTLRSYWKNYFESTDGLIWVVDSSD-RMRMQECKQE 105 (185)
T ss_pred ------eeEE--EEe---cceEEEEEEcCC-------------cchhHHHHHHhhhccCeEEEEEECch-HHHHHHHHHH
Confidence 1111 111 236799999999 56679999999999999999887643 3444444433
Q ss_pred HHHh----CCCCCceEEEeccCcccCccc--cHHHHHhCccc--ccCCCeeEEEeCChhhhccCCcHHHHHHHH
Q 006958 196 AREV----DPTGERTFGVLTKLDLMDKGT--NALEVLEGRSY--RLQHPWVGIVNRSQADINKNVDMIAARRKE 261 (624)
Q Consensus 196 ~~~~----d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~--~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (624)
++.+ .-.|.+.+++.||.|+...-. ++...+.-+.. ...-..+.+...+++++.++++++.....+
T Consensus 106 L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 106 LTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 3332 334789999999999973211 12222221222 122344566677788887888887776665
No 228
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=90.01 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=79.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..+++||-|+|||||++|.+....+ -++ -++|+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~-~ed-miptv--------------------------------------------- 53 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQY-LED-MIPTV--------------------------------------------- 53 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccc-hhh-hcccc---------------------------------------------
Confidence 4899999999999999999886554 111 11111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc---cccHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---IATSDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d---~~~~~~ 192 (624)
||. +.-...++..+.++|+|| +..++.|...|.+..++|+.+|.++..+ .+.++.
T Consensus 54 ----Gfn-----mrk~tkgnvtiklwD~gG-------------q~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL 111 (186)
T KOG0075|consen 54 ----GFN-----MRKVTKGNVTIKLWDLGG-------------QPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSEL 111 (186)
T ss_pred ----cce-----eEEeccCceEEEEEecCC-------------CccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHH
Confidence 111 112234456788999999 4556999999999999988888777643 222333
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
..++..-.-.|.|.++..||.|+.+.-
T Consensus 112 ~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 112 HDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred HHHhcchhhcCCcEEEecccccCcccc
Confidence 334444444689999999999987653
No 229
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.83 E-value=6e-09 Score=104.19 Aligned_cols=92 Identities=26% Similarity=0.342 Sum_probs=63.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
--++++||.||+||||||++|+|.+--+.+...+|..| +
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~-----------------------------------------V 101 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP-----------------------------------------V 101 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc-----------------------------------------c
Confidence 34999999999999999999999875333344444433 2
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~ 187 (624)
.| +...+..++.++|+|||+..+..+... -..+.+.++++|.||+ |.++..+.
T Consensus 102 PG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIii-Vld~~~~~ 154 (365)
T COG1163 102 PG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIII-VLDVFEDP 154 (365)
T ss_pred cc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEE-EEecCCCh
Confidence 23 333455789999999999887764221 1235677889998776 45555444
No 230
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.82 E-value=1.4e-08 Score=109.58 Aligned_cols=67 Identities=22% Similarity=0.264 Sum_probs=41.7
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---ccHHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~---~~~~~~~l~~~~d~~~~rti~VltK 212 (624)
..++||||||. +.+......++..+|+++|+| +++... .+.+.+.++..+. ..+.++|+||
T Consensus 80 ~~i~liDtPGh-------------~~f~~~~~~g~~~aD~aIlVV-Da~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGH-------------ETLMATMLSGAALMDGALLVI-AANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCH-------------HHHHHHHHHHHHHCCEEEEEE-ECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 56899999992 233334456667899877755 555432 2233343443322 2468999999
Q ss_pred CcccCc
Q 006958 213 LDLMDK 218 (624)
Q Consensus 213 ~D~~~~ 218 (624)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999864
No 231
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.82 E-value=2.1e-08 Score=104.71 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=62.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
++|++||.||||||||+|+|+|.+........||+-|..-.+.-.+. . ++.+ .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~-------------r---~~~l-----------~ 55 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDP-------------R---LDKL-----------A 55 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccc-------------c---chhh-----------H
Confidence 58999999999999999999998743334466887774333211100 0 0000 0
Q ss_pred CCCCCcccccEEEEEecCC---CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC
Q 006958 116 GKSKQISNIPIQLSIYSPN---VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN 184 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~---~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~ 184 (624)
. ++.|. ...+.|+|+||++..+.. .+.+.+-....++++|+++++| ++.
T Consensus 56 ~-------------~~~p~~~~~a~i~lvD~pGL~~~a~~------g~glg~~fL~~i~~aD~li~VV-d~f 107 (364)
T PRK09601 56 E-------------IVKPKKIVPATIEFVDIAGLVKGASK------GEGLGNQFLANIREVDAIVHVV-RCF 107 (364)
T ss_pred H-------------hcCCccccCceEEEEECCCCCCCCCh------HHHHHHHHHHHHHhCCEEEEEE-eCC
Confidence 0 11111 135899999999975443 2334455667788999877655 443
No 232
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.81 E-value=5.7e-09 Score=91.99 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.|-...++|++++|||||+-.+....| ..+.-.++.
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiG------------------------------------------- 42 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIG------------------------------------------- 42 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEee-------------------------------------------
Confidence 455678999999999999999988765 222111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC--CccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN--QDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~--~d~~~~~ 191 (624)
+..++-.+.|.| +...|.||||.| ++.++.++..|.+.++.+|++..-.| +......
T Consensus 43 -------vDfkirTv~i~G-~~VkLqIwDtAG-------------qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~r 101 (198)
T KOG0079|consen 43 -------VDFKIRTVDING-DRVKLQIWDTAG-------------QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKR 101 (198)
T ss_pred -------eeEEEEEeecCC-cEEEEEEeeccc-------------HHHHHHHHHHHccCCceEEEEEECcchhhhHhHHH
Confidence 111222222332 235799999999 89999999999999998887643322 2333466
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
|++-++.-.+ ..+-++|.||.|..++.
T Consensus 102 WLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 102 WLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHhcCc-cccceecccCCCCccce
Confidence 7776666544 57889999999987654
No 233
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.81 E-value=2e-08 Score=112.61 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||. ..+...+..+++.+|+++|+| ++..+...+.. .+++.+...+.|.|+|+||+|
T Consensus 63 ~~kinlIDTPGh-------------~DF~~ev~~~l~~aD~alLVV-Da~~G~~~qT~-~~l~~a~~~~ip~IVviNKiD 127 (594)
T TIGR01394 63 GTKINIVDTPGH-------------ADFGGEVERVLGMVDGVLLLV-DASEGPMPQTR-FVLKKALELGLKPIVVINKID 127 (594)
T ss_pred CEEEEEEECCCH-------------HHHHHHHHHHHHhCCEEEEEE-eCCCCCcHHHH-HHHHHHHHCCCCEEEEEECCC
Confidence 468999999993 334556788999999887765 45444433322 233444446789999999999
Q ss_pred ccCc
Q 006958 215 LMDK 218 (624)
Q Consensus 215 ~~~~ 218 (624)
+...
T Consensus 128 ~~~a 131 (594)
T TIGR01394 128 RPSA 131 (594)
T ss_pred CCCc
Confidence 8653
No 234
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.80 E-value=1.8e-08 Score=115.96 Aligned_cols=134 Identities=11% Similarity=0.184 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++..|+|+|..++|||||+|+|++.. +...+ + . .+. ++..+.|+... ++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~---~--~~~-----------~g~~~~D~~~~--------e~ 57 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYT------GRIHK-I---G--EVH-----------DGAATMDWMEQ--------EK 57 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhC------CCccc-c---c--ccc-----------CCccccCCCHH--------HH
Confidence 56799999999999999999998643 11111 1 0 000 01111222111 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
. .+++-+.....+.. +...++||||||..+. ...+..+++.+|+++++| ++..+...++.
T Consensus 58 ~----rgiti~~~~~~~~~-~~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVv-da~~g~~~~~~- 117 (689)
T TIGR00484 58 E----RGITITSAATTVFW-KGHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVL-DAVGGVQPQSE- 117 (689)
T ss_pred h----cCCCEecceEEEEE-CCeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEE-eCCCCCChhHH-
Confidence 1 23333333333333 3468999999997542 224678888999877755 55555444432
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+++.+...+.|.++|+||+|+...
T Consensus 118 ~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 118 TVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3455556668899999999999854
No 235
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.80 E-value=3.4e-08 Score=106.66 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=49.8
Q ss_pred CcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHH
Q 006958 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAR 197 (624)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--~~~~l~~ 197 (624)
++|-+.....+.. +...++||||||. .+.+.++. ..+..+|+++| |++++.++..+ +.+.+++
T Consensus 65 giTid~~~~~~~~-~~~~~~liDtPGh------------~~f~~~~~-~~~~~aD~all-VVda~~G~~~qt~~~~~~~~ 129 (406)
T TIGR02034 65 GITIDVAYRYFST-DKRKFIVADTPGH------------EQYTRNMA-TGASTADLAVL-LVDARKGVLEQTRRHSYIAS 129 (406)
T ss_pred CcCeEeeeEEEcc-CCeEEEEEeCCCH------------HHHHHHHH-HHHhhCCEEEE-EEECCCCCccccHHHHHHHH
Confidence 4454444444433 3468999999993 22333443 45678998776 45566555433 3344555
Q ss_pred HhCCCCCceEEEeccCcccCc
Q 006958 198 EVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 198 ~~d~~~~rti~VltK~D~~~~ 218 (624)
.+. ..+.|+|+||+|+.+.
T Consensus 130 ~~~--~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 130 LLG--IRHVVLAVNKMDLVDY 148 (406)
T ss_pred HcC--CCcEEEEEEecccccc
Confidence 543 2357889999999854
No 236
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.79 E-value=7.8e-09 Score=91.48 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
+|+|+|+.+||||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999875
No 237
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.79 E-value=7.1e-08 Score=95.03 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.+|||||- +.+..+...|+..++++|+++ +.+...+-. .++..+.... ...++++|.||
T Consensus 58 i~i~~~Dt~g~-------------~~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQ-------------EKFGGLRDGYYIKGQCAIIMF-DVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCc-------------hhhhhhhHHHhccCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 56889999993 223455667888899877755 444322222 2222222232 35788899999
Q ss_pred CcccCcccc--HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 213 LDLMDKGTN--ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 213 ~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+|+.+.... ...+.. ..+..|+.+++.++.++++.+..+.
T Consensus 123 ~Dl~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 123 VDVKDRQVKARQITFHR----KKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred ccCccccCCHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 998654221 122221 2335677777777776655444333
No 238
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=5.6e-08 Score=103.89 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=99.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
...|-|+|+|+--.||||||.+|=+.++-+...|
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaG---------------------------------------------- 36 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAG---------------------------------------------- 36 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCC----------------------------------------------
Confidence 3689999999999999999999988776332222
Q ss_pred hhhCCCCCcccccEEEEEecC--CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH
Q 006958 113 RITGKSKQISNIPIQLSIYSP--NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS 190 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~ 190 (624)
|++.+.=..++..+ +.+.++|+|||| .+.|.+|-.+=.+=+|++|| |++++..+-.|
T Consensus 37 -------GITQhIGA~~v~~~~~~~~~itFiDTPG-------------HeAFt~mRaRGa~vtDIaIL-VVa~dDGv~pQ 95 (509)
T COG0532 37 -------GITQHIGAYQVPLDVIKIPGITFIDTPG-------------HEAFTAMRARGASVTDIAIL-VVAADDGVMPQ 95 (509)
T ss_pred -------ceeeEeeeEEEEeccCCCceEEEEcCCc-------------HHHHHHHHhcCCccccEEEE-EEEccCCcchh
Confidence 33333333334433 458899999999 67777776666677897777 55777776665
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccH--HHHHhCcccccC----CCeeEEEeCChhhhccCCcHHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNA--LEVLEGRSYRLQ----HPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~----~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
... -...+...+.|+++.+||+|+.+...+. .++.+....+-. ..++.+++.++.++.+++..+.
T Consensus 96 TiE-AI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 96 TIE-AINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred HHH-HHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 433 2233344589999999999998554321 122211111111 2344555555566666555443
No 239
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.78 E-value=2.8e-08 Score=93.01 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=55.1
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHHHHHHhC-CCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIKLAREVD-PTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~-~~~~~l~~~~d-~~~~rti~VltK 212 (624)
..+.+|||+|--. ..|.+.+|+++++....+.+ +.+ ..++..+.... ....|+++|.||
T Consensus 47 ~~l~i~D~~g~~~------------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK 108 (158)
T cd04103 47 HLLLIRDEGGAPD------------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ 108 (158)
T ss_pred EEEEEEECCCCCc------------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence 4589999999421 24667899888766443321 111 23333333333 245799999999
Q ss_pred CcccCccc-c-----HHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 213 LDLMDKGT-N-----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 213 ~D~~~~~~-~-----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
.|+..... . ..++.+ ......|+.+++.++.++++.+.
T Consensus 109 ~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 109 DAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred HHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 99853211 1 112221 11135688888887777665443
No 240
>PRK12739 elongation factor G; Reviewed
Probab=98.78 E-value=3e-08 Score=114.17 Aligned_cols=134 Identities=13% Similarity=0.185 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++..|+|+|..++|||||+|+|+... +...+.- ... .+..+.|+....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~------g~~~~~~------~v~-----------~~~~~~D~~~~E--------- 54 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYT------GKSHKIG------EVH-----------DGAATMDWMEQE--------- 54 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhC------CCccccc------ccc-----------CCccccCCChhH---------
Confidence 56789999999999999999997542 1110000 000 011122222111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
...+++-+.....+.. +...++||||||..+ +...+..++..+|++|+ |+++..+...++.
T Consensus 55 ---~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~-------------f~~e~~~al~~~D~~il-VvDa~~g~~~qt~- 115 (691)
T PRK12739 55 ---QERGITITSAATTCFW-KGHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVA-VFDAVSGVEPQSE- 115 (691)
T ss_pred ---hhcCCCccceeEEEEE-CCEEEEEEcCCCHHH-------------HHHHHHHHHHHhCeEEE-EEeCCCCCCHHHH-
Confidence 1123444333333333 346899999999542 23347788899998766 5556666655543
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+++.+...+.|.|+++||+|+...
T Consensus 116 ~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 116 TVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3556666678999999999999854
No 241
>PRK12735 elongation factor Tu; Reviewed
Probab=98.78 E-value=3.5e-08 Score=106.18 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=43.8
Q ss_pred CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceE-EEecc
Q 006958 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF-GVLTK 212 (624)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti-~VltK 212 (624)
+..+++||||||. .+.+.++ ...+..+|+++|+ +++......+.. ..+..+...+.+.+ +|+||
T Consensus 73 ~~~~i~~iDtPGh------------~~f~~~~-~~~~~~aD~~llV-vda~~g~~~qt~-e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 73 ANRHYAHVDCPGH------------ADYVKNM-ITGAAQMDGAILV-VSAADGPMPQTR-EHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCcEEEEEECCCH------------HHHHHHH-HhhhccCCEEEEE-EECCCCCchhHH-HHHHHHHHcCCCeEEEEEEe
Confidence 4467899999993 2233334 3556789977664 455554444432 23344445577866 57999
Q ss_pred CcccCc
Q 006958 213 LDLMDK 218 (624)
Q Consensus 213 ~D~~~~ 218 (624)
+|+.+.
T Consensus 138 ~Dl~~~ 143 (396)
T PRK12735 138 CDMVDD 143 (396)
T ss_pred cCCcch
Confidence 999853
No 242
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.77 E-value=4.8e-08 Score=108.21 Aligned_cols=138 Identities=14% Similarity=0.243 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.-.|+++|..+||||||+++|+... |..++... +. .+.. ......|+.... ..
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~-v~--~~~~----------~~~~~~D~~~~E------~~- 62 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGT-VK--GRKS----------GRHATSDWMEME------KQ- 62 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccce-ee--cccc----------CccccCCCcHHH------Hh-
Confidence 56689999999999999999997432 22222210 00 0000 000112332221 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.+..++.....+. . +...+++|||||..+ +...+..++..+|++|+++ ++..+...+. .
T Consensus 63 ---rgiSi~~~~~~~~--~-~~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVv-Da~~gv~~~t-~ 121 (526)
T PRK00741 63 ---RGISVTSSVMQFP--Y-RDCLINLLDTPGHED-------------FSEDTYRTLTAVDSALMVI-DAAKGVEPQT-R 121 (526)
T ss_pred ---hCCceeeeeEEEE--E-CCEEEEEEECCCchh-------------hHHHHHHHHHHCCEEEEEE-ecCCCCCHHH-H
Confidence 1122333333333 2 346799999999432 2445677888999887765 4544444332 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+.+.....+.|+++++||+|+...
T Consensus 122 ~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 122 KLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHhcCCCEEEEEECCccccc
Confidence 3445555568999999999998654
No 243
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.77 E-value=3.8e-08 Score=112.33 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=43.4
Q ss_pred CCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEe
Q 006958 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVL 210 (624)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~--~~~~~l~~~~d~~~~rti~Vl 210 (624)
.+..+++||||||.. +...++. ..+..+|+++| |++++.++.. .+.+.+++.+. -.+.|+|+
T Consensus 101 ~~~~~~~liDtPG~~------------~f~~~~~-~~~~~aD~~ll-Vvda~~g~~~~t~e~~~~~~~~~--~~~iivvv 164 (632)
T PRK05506 101 TPKRKFIVADTPGHE------------QYTRNMV-TGASTADLAII-LVDARKGVLTQTRRHSFIASLLG--IRHVVLAV 164 (632)
T ss_pred cCCceEEEEECCChH------------HHHHHHH-HHHHhCCEEEE-EEECCCCccccCHHHHHHHHHhC--CCeEEEEE
Confidence 345689999999932 2233343 35778997766 4556554433 23344555442 14678899
Q ss_pred ccCcccC
Q 006958 211 TKLDLMD 217 (624)
Q Consensus 211 tK~D~~~ 217 (624)
||+|+.+
T Consensus 165 NK~D~~~ 171 (632)
T PRK05506 165 NKMDLVD 171 (632)
T ss_pred Eeccccc
Confidence 9999985
No 244
>PLN03127 Elongation factor Tu; Provisional
Probab=98.77 E-value=3.1e-08 Score=107.74 Aligned_cols=130 Identities=16% Similarity=0.194 Sum_probs=75.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|..++|||||+++|+|... ..|.. .... |. ..|. .. .
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~--~~~~-------------~~---------~~D~--~~----------~ 104 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLA-EEGKA--KAVA-------------FD---------EIDK--AP----------E 104 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc--ccee-------------ec---------cccC--Ch----------h
Confidence 4699999999999999999986421 11110 0000 00 0000 00 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
....|++-+.....+.. +..+++|+||||..+ .+.+++. -+..+|+++| |++++.....++ .+.
T Consensus 105 E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~------------f~~~~~~-g~~~aD~all-VVda~~g~~~qt-~e~ 168 (447)
T PLN03127 105 EKARGITIATAHVEYET-AKRHYAHVDCPGHAD------------YVKNMIT-GAAQMDGGIL-VVSAPDGPMPQT-KEH 168 (447)
T ss_pred HhhcCceeeeeEEEEcC-CCeEEEEEECCCccc------------hHHHHHH-HHhhCCEEEE-EEECCCCCchhH-HHH
Confidence 11234555555555444 346899999999532 3344443 3346997766 556666554443 234
Q ss_pred HHHhCCCCCce-EEEeccCcccCc
Q 006958 196 AREVDPTGERT-FGVLTKLDLMDK 218 (624)
Q Consensus 196 ~~~~d~~~~rt-i~VltK~D~~~~ 218 (624)
+..+...+.+. |+|+||+|+++.
T Consensus 169 l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 169 ILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHcCCCeEEEEEEeeccCCH
Confidence 44455567784 788999999853
No 245
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.76 E-value=3.1e-08 Score=106.66 Aligned_cols=130 Identities=16% Similarity=0.229 Sum_probs=72.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|+++|..++|||||+++|++.- ...|.+ .... + ...| .... +
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~---------~~~~------~---------~~~d--~~~~------E--- 56 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVL-AKEGGA---------AARA------Y---------DQID--NAPE------E--- 56 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhH-HHhhcc---------cccc------c---------cccc--CCHH------H---
Confidence 479999999999999999999752 111110 0000 0 0000 0000 1
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
...|++-+...+.+.. +...++||||||.. +.+.++ ...+..+|+++| |++++.....+.. +.
T Consensus 57 -~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~------------~f~~~~-~~~~~~~D~~il-Vvda~~g~~~qt~-e~ 119 (394)
T TIGR00485 57 -KARGITINTAHVEYET-ENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAIL-VVSATDGPMPQTR-EH 119 (394)
T ss_pred -HhcCcceeeEEEEEcC-CCEEEEEEECCchH------------HHHHHH-HHHHhhCCEEEE-EEECCCCCcHHHH-HH
Confidence 1134444444454433 34579999999932 222333 344567898777 4556554433322 23
Q ss_pred HHHhCCCCCceE-EEeccCcccCc
Q 006958 196 AREVDPTGERTF-GVLTKLDLMDK 218 (624)
Q Consensus 196 ~~~~d~~~~rti-~VltK~D~~~~ 218 (624)
+..+...+.+.+ +|+||+|+.+.
T Consensus 120 l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 120 ILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHcCCCEEEEEEEecccCCH
Confidence 334444567765 68999999864
No 246
>PRK12736 elongation factor Tu; Reviewed
Probab=98.76 E-value=3.7e-08 Score=105.93 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=71.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|+++|..++|||||+++|+|..- ..|.+- +..+. +.+..++ ++
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~-~~g~~~-----------------------------~~~~~-~~d~~~~--E~-- 57 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLA-ERGLNQ-----------------------------AKDYD-SIDAAPE--EK-- 57 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhh-hhcccc-----------------------------ccchh-hhcCCHH--HH--
Confidence 4699999999999999999997521 111000 00000 0000000 11
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
..++|-+.....+. .+...++||||||. .+.+.++ ..-+..+|+++| |+++..++..++. ..
T Consensus 58 --~rg~T~~~~~~~~~-~~~~~i~~iDtPGh------------~~f~~~~-~~~~~~~d~~ll-Vvd~~~g~~~~t~-~~ 119 (394)
T PRK12736 58 --ERGITINTAHVEYE-TEKRHYAHVDCPGH------------ADYVKNM-ITGAAQMDGAIL-VVAATDGPMPQTR-EH 119 (394)
T ss_pred --hcCccEEEEeeEec-CCCcEEEEEECCCH------------HHHHHHH-HHHHhhCCEEEE-EEECCCCCchhHH-HH
Confidence 12344444333332 24468999999992 2333444 334468898766 4556655444332 23
Q ss_pred HHHhCCCCCc-eEEEeccCcccCc
Q 006958 196 AREVDPTGER-TFGVLTKLDLMDK 218 (624)
Q Consensus 196 ~~~~d~~~~r-ti~VltK~D~~~~ 218 (624)
+..+...+.+ .|+|+||+|+.+.
T Consensus 120 ~~~~~~~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 120 ILLARQVGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHcCCCEEEEEEEecCCcch
Confidence 3344445777 5788999999753
No 247
>PRK00007 elongation factor G; Reviewed
Probab=98.76 E-value=3e-08 Score=114.08 Aligned_cols=135 Identities=12% Similarity=0.160 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++..|+|+|..++|||||+|+|+... |...+ . . ... .+..+.|+.... +
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~---g--~v~-----------~~~~~~D~~~~E--------~ 57 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYT------GVNHK-I---G--EVH-----------DGAATMDWMEQE--------Q 57 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhc------CCccc-c---c--ccc-----------CCcccCCCCHHH--------H
Confidence 56799999999999999999997432 11000 0 0 000 011122222211 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
..++|-+.....+... ...++||||||..+. ..-+.+.+..+|+++++ +++..+...++..
T Consensus 58 ----~rg~ti~~~~~~~~~~-~~~~~liDTPG~~~f-------------~~ev~~al~~~D~~vlV-vda~~g~~~qt~~ 118 (693)
T PRK00007 58 ----ERGITITSAATTCFWK-DHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAV-FDAVGGVEPQSET 118 (693)
T ss_pred ----hCCCCEeccEEEEEEC-CeEEEEEeCCCcHHH-------------HHHHHHHHHHcCEEEEE-EECCCCcchhhHH
Confidence 1234444433434333 468999999995431 12256777888977764 4566666555543
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+++.+...+.|.|+++||+|+....
T Consensus 119 -~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 119 -VWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred -HHHHHHHcCCCEEEEEECCCCCCCC
Confidence 6666667789999999999998643
No 248
>PRK10218 GTP-binding protein; Provisional
Probab=98.75 E-value=3.8e-08 Score=110.36 Aligned_cols=131 Identities=15% Similarity=0.250 Sum_probs=77.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC-cccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
++..|+++|+.++|||||+++|++.. .+++... +.. .+.|...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~-~~~-------------------------~v~D~~~---------- 47 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE-TQE-------------------------RVMDSND---------- 47 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccc-cce-------------------------eeecccc----------
Confidence 56789999999999999999999632 1111100 000 0001000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.....+++-..-...+.. +...++||||||..+ +...+..+++.+|++|++| ++..+...+..
T Consensus 48 --~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~d-------------f~~~v~~~l~~aDg~ILVV-Da~~G~~~qt~ 110 (607)
T PRK10218 48 --LEKERGITILAKNTAIKW-NDYRINIVDTPGHAD-------------FGGEVERVMSMVDSVLLVV-DAFDGPMPQTR 110 (607)
T ss_pred --ccccCceEEEEEEEEEec-CCEEEEEEECCCcch-------------hHHHHHHHHHhCCEEEEEE-ecccCccHHHH
Confidence 011223333333333333 347899999999432 3455778999999887755 45444433332
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
. .++.+...+.|.|+|+||+|+...
T Consensus 111 ~-~l~~a~~~gip~IVviNKiD~~~a 135 (607)
T PRK10218 111 F-VTKKAFAYGLKPIVVINKVDRPGA 135 (607)
T ss_pred H-HHHHHHHcCCCEEEEEECcCCCCC
Confidence 2 333344467899999999998643
No 249
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.6e-08 Score=93.71 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
--+-.||++|++++|||-||.+++...| .+-++-++-+.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF-----~~~SksTIGvef~t--------------------------------- 53 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEF-----SLESKSTIGVEFAT--------------------------------- 53 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccccc-----CcccccceeEEEEe---------------------------------
Confidence 3567899999999999999999999888 44444333332211
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---cccc
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIAT 189 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~---d~~~ 189 (624)
..+.|.+ ......||||.| ++.++.++..|.+.+...+|+. +.+. .-..
T Consensus 54 -------------~t~~vd~-k~vkaqIWDTAG-------------QERyrAitSaYYrgAvGAllVY-DITr~~Tfenv 105 (222)
T KOG0087|consen 54 -------------RTVNVDG-KTVKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVY-DITRRQTFENV 105 (222)
T ss_pred -------------eceeecC-cEEEEeeecccc-------------hhhhccccchhhcccceeEEEE-echhHHHHHHH
Confidence 0111211 224678999999 7888999999999999877754 3322 1233
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccC
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
..|+.-++.......++++|.||+|+..
T Consensus 106 ~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 106 ERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 5566666665555789999999999976
No 250
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.75 E-value=6.7e-08 Score=106.09 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCc--cCChHHHHHHHHHHH
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKK--FTDFAAVRKEISDET 111 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~i~~~~ 111 (624)
....|+++|..++|||||+++|+... +..++.-+. .+.+.. ...+.. -.++.-+.+...++.
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~~-~~~~~~---------~~~g~~~~~~~~a~~~D~~~eEr 89 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQLA-SLHNDS---------KRHGTQGEKLDLALLVDGLQAER 89 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHHH-HHHHHH---------HhcCCCccccchhhhccCChHHh
Confidence 56799999999999999999999764 222211000 000000 000000 000111111111111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH-
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS- 190 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~- 190 (624)
..++|-+.-... ...+..+++||||||. .....+++.. +..+|+++| |++++.+...+
T Consensus 90 ------~rgiTid~~~~~-~~~~~~~i~~iDTPGh------------~~f~~~~~~~-l~~aD~all-VVDa~~G~~~qt 148 (474)
T PRK05124 90 ------EQGITIDVAYRY-FSTEKRKFIIADTPGH------------EQYTRNMATG-ASTCDLAIL-LIDARKGVLDQT 148 (474)
T ss_pred ------hcCCCeEeeEEE-eccCCcEEEEEECCCc------------HHHHHHHHHH-HhhCCEEEE-EEECCCCccccc
Confidence 133443332222 2344568999999992 1223444444 588997766 55566554332
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 -~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+.+.++..+.. .+.|+|+||+|+.+.
T Consensus 149 ~~~~~l~~~lg~--~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 149 RRHSFIATLLGI--KHLVVAVNKMDLVDY 175 (474)
T ss_pred hHHHHHHHHhCC--CceEEEEEeeccccc
Confidence 33345555431 468899999999853
No 251
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.75 E-value=3.5e-08 Score=96.65 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=80.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.|+++++|..|+|||||||.++.... -+..+ ...|
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~--k~K~----------------------------------------- 170 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKN-IADTS--KSKN----------------------------------------- 170 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhh-hhhhc--CCCC-----------------------------------------
Confidence 568999999999999999999998753 11111 0011
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEE--EEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCI--ILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~i--iL~V~~a~~d~~~~~ 191 (624)
|.+.. ++-+ .-...+.+||+||+.....+ .+..+...++++.|+.+-+.+ +++.+++...+..-|
T Consensus 171 --g~Tq~-------in~f-~v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D 237 (320)
T KOG2486|consen 171 --GKTQA-------INHF-HVGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD 237 (320)
T ss_pred --cccee-------eeee-eccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC
Confidence 10000 0011 11256899999996654443 223445578888888543322 122446666666655
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.. .+..+...+.|..+|+||||....
T Consensus 238 ~~-~i~~~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 238 NP-EIAWLGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred hH-HHHHHhhcCCCeEEeeehhhhhhh
Confidence 54 556677789999999999998754
No 252
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.74 E-value=7.6e-08 Score=104.82 Aligned_cols=82 Identities=13% Similarity=0.243 Sum_probs=46.9
Q ss_pred CcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--ccc--HHHHHH
Q 006958 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IAT--SDAIKL 195 (624)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~--~~~~~l 195 (624)
+++-+.....+.. +...++||||||. +.+......++..+|+++|++...+.. ... ...+.+
T Consensus 70 g~Tid~~~~~~~~-~~~~i~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~ 135 (426)
T TIGR00483 70 GVTIDVAHWKFET-DKYEVTIVDCPGH-------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFL 135 (426)
T ss_pred CceEEEEEEEEcc-CCeEEEEEECCCH-------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHH
Confidence 3444444444433 3468999999992 222333344678899888765543321 222 222334
Q ss_pred HHHhCCCCCceEEEeccCcccC
Q 006958 196 AREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~ 217 (624)
++.+. ..++|+|+||+|+.+
T Consensus 136 ~~~~~--~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 136 ARTLG--INQLIVAINKMDSVN 155 (426)
T ss_pred HHHcC--CCeEEEEEEChhccC
Confidence 44432 246889999999975
No 253
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.72 E-value=2.3e-07 Score=96.34 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
....|.|.|.+|||||||+++|...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998764
No 254
>PRK00049 elongation factor Tu; Reviewed
Probab=98.72 E-value=5.4e-08 Score=104.70 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=71.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|+++|..++|||||+++|++.. ...+.+-.. .|. ..|. ..+ ++
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~~~~---------------~~~---------~~d~--~~~------E~-- 57 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVL-AKKGGAEAK---------------AYD---------QIDK--APE------EK-- 57 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhh-hhccCCccc---------------chh---------hccC--ChH------HH--
Confidence 469999999999999999999842 011100000 000 0000 000 11
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
..++|-+.....+. .+..+++|+||||.. +.+.++ ...+..+|++++ |+++......++. .+
T Consensus 58 --~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~------------~f~~~~-~~~~~~aD~~ll-VVDa~~g~~~qt~-~~ 119 (396)
T PRK00049 58 --ARGITINTAHVEYE-TEKRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAIL-VVSAADGPMPQTR-EH 119 (396)
T ss_pred --hcCeEEeeeEEEEc-CCCeEEEEEECCCHH------------HHHHHH-HhhhccCCEEEE-EEECCCCCchHHH-HH
Confidence 12344333333332 344679999999942 233333 345688998776 4556554443322 23
Q ss_pred HHHhCCCCCceE-EEeccCcccC
Q 006958 196 AREVDPTGERTF-GVLTKLDLMD 217 (624)
Q Consensus 196 ~~~~d~~~~rti-~VltK~D~~~ 217 (624)
+..+...+.|.+ +++||+|+++
T Consensus 120 ~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 120 ILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHcCCCEEEEEEeecCCcc
Confidence 344444577876 5899999985
No 255
>PLN03126 Elongation factor Tu; Provisional
Probab=98.71 E-value=6.3e-08 Score=105.92 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=74.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|+++|..++|||||+++|++..- .+..+.+-. + .+.|... + ++
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~~-----------~---------~~~D~~~------~--Er-- 126 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPKK-----------Y---------DEIDAAP------E--ER-- 126 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh-----hhccccccc-----------c---------ccccCCh------h--HH--
Confidence 4689999999999999999997532 121222100 0 0011110 0 11
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
..+++-+.....+.. +...++||||||. .+.+.++ ..-+..+|+.+| |+++..+...+.. +.
T Consensus 127 --~rGiTi~~~~~~~~~-~~~~i~liDtPGh------------~~f~~~~-~~g~~~aD~ail-VVda~~G~~~qt~-e~ 188 (478)
T PLN03126 127 --ARGITINTATVEYET-ENRHYAHVDCPGH------------ADYVKNM-ITGAAQMDGAIL-VVSGADGPMPQTK-EH 188 (478)
T ss_pred --hCCeeEEEEEEEEec-CCcEEEEEECCCH------------HHHHHHH-HHHHhhCCEEEE-EEECCCCCcHHHH-HH
Confidence 123443333333333 4468999999993 2333444 445568998776 4566655544432 23
Q ss_pred HHHhCCCCCc-eEEEeccCcccCc
Q 006958 196 AREVDPTGER-TFGVLTKLDLMDK 218 (624)
Q Consensus 196 ~~~~d~~~~r-ti~VltK~D~~~~ 218 (624)
+..+...|.+ .|+++||+|+.+.
T Consensus 189 ~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 189 ILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHcCCCeEEEEEecccccCH
Confidence 3344445777 6789999999864
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.71 E-value=7e-08 Score=106.90 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=76.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+...|+|+|..+||||||+++|+-.. |...+.+. +. .. + .......|+.... +
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~-v~---~~-g--------~~~~t~~D~~~~E--------~ 62 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGA-VK---GR-G--------SQRHAKSDWMEME--------K 62 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccce-ec---cc-c--------ccccccCCCCHHH--------H
Confidence 56799999999999999999996432 22222220 00 00 0 0001122332211 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
..++|-..-.+.+.. +...+.||||||.. .+...+.+++..+|++|++|. +...+..+. .
T Consensus 63 ----~rgisi~~~~~~~~~-~~~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlVvD-a~~gv~~~t-~ 122 (527)
T TIGR00503 63 ----QRGISITTSVMQFPY-RDCLVNLLDTPGHE-------------DFSEDTYRTLTAVDNCLMVID-AAKGVETRT-R 122 (527)
T ss_pred ----hcCCcEEEEEEEEee-CCeEEEEEECCChh-------------hHHHHHHHHHHhCCEEEEEEE-CCCCCCHHH-H
Confidence 123332222222322 34789999999953 234456778889998877654 444443332 1
Q ss_pred HHHHHhCCCCCceEEEeccCcccC
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
.+.+.....+.|+++++||+|+..
T Consensus 123 ~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 123 KLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHhcCCCEEEEEECccccC
Confidence 233334445789999999999864
No 257
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=2.6e-07 Score=85.49 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=84.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccc------cccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHH
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT------RRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKE 106 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T------r~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 106 (624)
..-+.|+|+|.+++||||++.+++-.. ++.-.+..+ .+|+.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tT-------------------------------- 54 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTT-------------------------------- 54 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccc-cceeecccccccccccccee--------------------------------
Confidence 456899999999999999999999874 222111111 11111
Q ss_pred HHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc
Q 006958 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186 (624)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d 186 (624)
+..+.-.+.+ .+...+.|+|||| ++.++-|..-+.+.+..+|++|.++ .+
T Consensus 55 --------------va~D~g~~~~--~~~~~v~LfgtPG-------------q~RF~fm~~~l~~ga~gaivlVDss-~~ 104 (187)
T COG2229 55 --------------VAMDFGSIEL--DEDTGVHLFGTPG-------------QERFKFMWEILSRGAVGAIVLVDSS-RP 104 (187)
T ss_pred --------------EeecccceEE--cCcceEEEecCCC-------------cHHHHHHHHHHhCCcceEEEEEecC-CC
Confidence 1111222222 2335799999999 7778888888999999888866544 33
Q ss_pred cccHHHHHHHHHhCCCC-CceEEEeccCcccCccc--cHHHHHh
Q 006958 187 IATSDAIKLAREVDPTG-ERTFGVLTKLDLMDKGT--NALEVLE 227 (624)
Q Consensus 187 ~~~~~~~~l~~~~d~~~-~rti~VltK~D~~~~~~--~~~~~l~ 227 (624)
... .+..+...+.... .|.++.+||.|+.+... .+.+++.
T Consensus 105 ~~~-~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~ 147 (187)
T COG2229 105 ITF-HAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK 147 (187)
T ss_pred cch-HHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH
Confidence 322 4444555554444 89999999999987643 3445554
No 258
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.69 E-value=6.5e-08 Score=95.91 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=43.8
Q ss_pred cCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCce-EEEe
Q 006958 132 SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERT-FGVL 210 (624)
Q Consensus 132 ~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rt-i~Vl 210 (624)
.++...++++||||.. .. +...++.+|++++ |+++..++..++. .+...+...|.+. |+|+
T Consensus 79 ~~~~~~i~~vDtPg~~---------------~~-~l~~ak~aDvVll-viDa~~~~~~~~~-~i~~~l~~~g~p~vi~Vv 140 (225)
T cd01882 79 TGKKRRLTFIECPNDI---------------NA-MIDIAKVADLVLL-LIDASFGFEMETF-EFLNILQVHGFPRVMGVL 140 (225)
T ss_pred ecCCceEEEEeCCchH---------------HH-HHHHHHhcCEEEE-EEecCcCCCHHHH-HHHHHHHHcCCCeEEEEE
Confidence 3456789999999832 11 2234577897655 5566655554443 2445454456674 5699
Q ss_pred ccCcccCcc
Q 006958 211 TKLDLMDKG 219 (624)
Q Consensus 211 tK~D~~~~~ 219 (624)
||+|++.+.
T Consensus 141 nK~D~~~~~ 149 (225)
T cd01882 141 THLDLFKKN 149 (225)
T ss_pred eccccCCcH
Confidence 999998543
No 259
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.69 E-value=6.3e-07 Score=93.41 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=83.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|.|||+-++|||||+|++++.-++|.-+..--| +++.+.+.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k-------------------------------------~Ra~DELp 60 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDK-------------------------------------ERAQDELP 60 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHH-------------------------------------hHHHhccC
Confidence 38999999999999999999999666643210000 00111121
Q ss_pred CCCCC----------cccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHH----------------HHHHHHHHHh
Q 006958 116 GKSKQ----------ISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIV----------------EDIENMVRSY 169 (624)
Q Consensus 116 g~~~~----------~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~----------------~~i~~~~~~y 169 (624)
.+..| +-.+.+.+.....-..++.||||+|+......|.-+.-. +..+-=+++-
T Consensus 61 qs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kV 140 (492)
T TIGR02836 61 QSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKV 140 (492)
T ss_pred cCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHH
Confidence 11111 122344444443334679999999998755444322111 1111125667
Q ss_pred hc-CCCEEEEEEecCC------CccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006958 170 VE-KPSCIILAISPAN------QDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 170 i~-~~~~iiL~V~~a~------~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
+. +++..|+++++++ .++...+ .+++.++...++|.|+|+||.|-.
T Consensus 141 I~dhstIgivVtTDgsi~dI~Re~y~~aE-e~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 141 IQEHSTIGVVVTTDGTITDIPREDYVEAE-ERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred HHhcCcEEEEEEcCCCccccccccchHHH-HHHHHHHHhcCCCEEEEEECcCCC
Confidence 77 7775554444653 1222222 347778888899999999999944
No 260
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.7e-07 Score=97.93 Aligned_cols=147 Identities=15% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
...|.|.|+|.--.||||||.+|-+.++-.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-------------------------------------------------- 180 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAA-------------------------------------------------- 180 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceeh--------------------------------------------------
Confidence 478999999999999999999998876511
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
+...|++...=-..+.-|....+||.|||| ...+..|-.+-..-.|.++| |+++..+.-.+..
T Consensus 181 ---~E~GGITQhIGAF~V~~p~G~~iTFLDTPG-------------HaAF~aMRaRGA~vtDIvVL-VVAadDGVmpQT~ 243 (683)
T KOG1145|consen 181 ---GEAGGITQHIGAFTVTLPSGKSITFLDTPG-------------HAAFSAMRARGANVTDIVVL-VVAADDGVMPQTL 243 (683)
T ss_pred ---hhcCCccceeceEEEecCCCCEEEEecCCc-------------HHHHHHHHhccCccccEEEE-EEEccCCccHhHH
Confidence 122244444444446666778999999999 56677777666777885555 6677776655543
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcccc--HHHHHhCcccccCC-CeeEEEeCChhh
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTN--ALEVLEGRSYRLQH-PWVGIVNRSQAD 247 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~-g~~~v~~~s~~~ 247 (624)
. .++.....+.|+|+.+||+|......+ ..+++........+ |-+.+++.|+..
T Consensus 244 E-aIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 244 E-AIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred H-HHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 2 333444457999999999996533211 23344332222223 556677777643
No 261
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.68 E-value=5.6e-08 Score=99.22 Aligned_cols=138 Identities=22% Similarity=0.355 Sum_probs=73.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|.|||..|+|||||+|+|++..+.+......+... . ..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~---~--------------------------------------~~ 44 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA---S--------------------------------------IS 44 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc---c--------------------------------------cc
Confidence 689999999999999999999887554311110000 0 00
Q ss_pred CCCCcccccEEEEEecC-CCCCcEEEeCCCCccccCCC-CCccHHHHHHHHHHHhhc-------------CCCEEEEEEe
Q 006958 117 KSKQISNIPIQLSIYSP-NVVNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYVE-------------KPSCIILAIS 181 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~-~~~~ltlvDtPGi~~~~~~~-~~~~~~~~i~~~~~~yi~-------------~~~~iiL~V~ 181 (624)
.+..+..... .+... -..+|++|||||+...-... ..+.+...+.+-...|+. +.|+++.++.
T Consensus 45 ~~~~i~~~~~--~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 45 RTLEIEERTV--ELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp SCEEEEEEEE--EEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred cccceeeEEE--EeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 0000111111 11111 12479999999987543221 112233444444444542 3466666666
Q ss_pred cCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 182 PANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 182 ~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
|....+...|.. ..+.+.. ..++|-|+.|+|.+.+.
T Consensus 123 pt~~~L~~~Di~-~mk~Ls~-~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 123 PTGHGLKPLDIE-FMKRLSK-RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp TTSSSS-HHHHH-HHHHHTT-TSEEEEEESTGGGS-HH
T ss_pred CCCccchHHHHH-HHHHhcc-cccEEeEEecccccCHH
Confidence 655666666654 7777776 48899999999998764
No 262
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.67 E-value=1e-07 Score=102.92 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-.|+++|+-++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 46999999999999999999875
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.65 E-value=3.6e-08 Score=93.09 Aligned_cols=119 Identities=21% Similarity=0.376 Sum_probs=64.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-|.|+++|..+||||+|+..|+...+.| ++|........
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n~~~------------------------------------ 41 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENNIAY------------------------------------ 41 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCCceE------------------------------------
Confidence 45899999999999999999999875422 22222100000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHH--hhcCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRS--YVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~--yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
.+..+....+.+||+||-.+.. ..+... |+..+.+||++|+++...-...+
T Consensus 42 ---------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~ 94 (181)
T PF09439_consen 42 ---------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELRD 94 (181)
T ss_dssp ---------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHH
T ss_pred ---------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHHH
Confidence 0112334679999999955432 122222 68889998887765532111112
Q ss_pred HHH----H--HHHhCCCCCceEEEeccCcccCcc
Q 006958 192 AIK----L--AREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 192 ~~~----l--~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+.+ + .....+.+.|++++.||.|+....
T Consensus 95 ~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 95 VAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred HHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 211 1 123346789999999999987643
No 264
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.65 E-value=1.4e-07 Score=108.96 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=47.6
Q ss_pred CCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEecc
Q 006958 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK 212 (624)
.+...++||||||..+. ...+..++..+|++++++ ++..++..+.. .+.+.+...+.|.++|+||
T Consensus 83 ~~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVv-da~~g~~~~t~-~~~~~~~~~~~p~ivviNK 147 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVV-CAVEGVMPQTE-TVLRQALKENVKPVLFINK 147 (720)
T ss_pred CCceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEE-ecCCCCCccHH-HHHHHHHHcCCCEEEEEEC
Confidence 34578999999997542 234677889999877755 55554433332 2444444456788999999
Q ss_pred CcccC
Q 006958 213 LDLMD 217 (624)
Q Consensus 213 ~D~~~ 217 (624)
+|...
T Consensus 148 iD~~~ 152 (720)
T TIGR00490 148 VDRLI 152 (720)
T ss_pred hhccc
Confidence 99864
No 265
>PRK13351 elongation factor G; Reviewed
Probab=98.60 E-value=2.2e-07 Score=107.20 Aligned_cols=134 Identities=16% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|..++|||||+++|+... +...+ .. ... .+....|+.... +
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~------g~~~~-~~-----~v~-----------~~~~~~d~~~~e--------~ 55 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYT------GKIHK-MG-----EVE-----------DGTTVTDWMPQE--------Q 55 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhc------CCccc-cc-----ccc-----------CCcccCCCCHHH--------H
Confidence 46789999999999999999998542 11110 00 000 011112222211 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
..| ..+......+.. +...++||||||..+ +...+..+++.+|++|+++ +++.+...+. .
T Consensus 56 ~r~--~ti~~~~~~~~~---~~~~i~liDtPG~~d-------------f~~~~~~~l~~aD~~ilVv-d~~~~~~~~~-~ 115 (687)
T PRK13351 56 ERG--ITIESAATSCDW---DNHRINLIDTPGHID-------------FTGEVERSLRVLDGAVVVF-DAVTGVQPQT-E 115 (687)
T ss_pred hcC--CCcccceEEEEE---CCEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEE-eCCCCCCHHH-H
Confidence 111 122223333332 346899999999532 3456788999999877755 5554443332 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+.+.+...+.|.++|+||+|+...
T Consensus 116 ~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 116 TVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHhcCCCEEEEEECCCCCCC
Confidence 3444555568899999999998754
No 266
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.57 E-value=4.9e-07 Score=98.33 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=40.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~~~l~~~~d~~~~rti~VltK 212 (624)
..++|||+||. ...+.+| ..-+..+|.++|+| +++.. ... .+.+.++..+.- .+.|+|+||
T Consensus 117 ~~i~~IDtPGH------------~~fi~~m-~~g~~~~D~alLVV-da~~g~~~~qT~ehl~i~~~lgi--~~iIVvlNK 180 (460)
T PTZ00327 117 RHVSFVDCPGH------------DILMATM-LNGAAVMDAALLLI-AANESCPQPQTSEHLAAVEIMKL--KHIIILQNK 180 (460)
T ss_pred ceEeeeeCCCH------------HHHHHHH-HHHHhhCCEEEEEE-ECCCCccchhhHHHHHHHHHcCC--CcEEEEEec
Confidence 36899999992 2334444 34456889877754 55543 222 334434443321 457899999
Q ss_pred CcccCc
Q 006958 213 LDLMDK 218 (624)
Q Consensus 213 ~D~~~~ 218 (624)
+|+.+.
T Consensus 181 iDlv~~ 186 (460)
T PTZ00327 181 IDLVKE 186 (460)
T ss_pred ccccCH
Confidence 999864
No 267
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.57 E-value=2.9e-07 Score=106.69 Aligned_cols=133 Identities=14% Similarity=0.236 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+...|+|+|+.++|||||+++|+... |..++.- .....+.|+.... .+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~-------------------~g~~~~~D~~~~E--~~----- 66 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL-------------------AGEQLALDFDEEE--QA----- 66 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh-------------------cCcceecCccHHH--HH-----
Confidence 56789999999999999999998643 2222210 0011122332211 11
Q ss_pred hhCCCCCcccccEEEEEe-cCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIY-SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~-~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.| ..+....+.+... ..+...++||||||..+. ...+...+..+|++|++| ++..+...+..
T Consensus 67 -rg--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVv-da~~g~~~~t~ 129 (731)
T PRK07560 67 -RG--ITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVV-DAVEGVMPQTE 129 (731)
T ss_pred -hh--hhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEE-ECCCCCCccHH
Confidence 11 1122223333331 223467899999996542 344677788899877755 55555444332
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
. +.+.+...+.+.|+++||+|+.
T Consensus 130 ~-~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 130 T-VLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred H-HHHHHHHcCCCeEEEEECchhh
Confidence 2 3344334467889999999986
No 268
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.56 E-value=3.7e-07 Score=107.14 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||..+ +..-+...++.+|+.|++| ++..++..+... +.+.+...+.|+|+++||+|
T Consensus 97 ~~~inliDtPGh~d-------------F~~e~~~al~~~D~ailVv-da~~Gv~~~t~~-~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVV-DCIEGVCVQTET-VLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHH-------------HHHHHHHHHhhcCEEEEEE-ECCCCCcccHHH-HHHHHHHCCCCEEEEEECCc
Confidence 35679999999432 2333466678899877755 566666555433 55666677899999999999
Q ss_pred cc
Q 006958 215 LM 216 (624)
Q Consensus 215 ~~ 216 (624)
+.
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.56 E-value=1.4e-07 Score=81.28 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=66.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|++||..|+||+||.++|-|...+++....+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAv----------------------------------------------- 34 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAV----------------------------------------------- 34 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccccee-----------------------------------------------
Confidence 379999999999999999999998766543111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
+..+ =-.|||||-+-. .........-...++|.|++ |.+++...+.-..
T Consensus 35 -------------e~~d-----~~~IDTPGEy~~---------~~~~Y~aL~tt~~dadvi~~-v~~and~~s~f~p--- 83 (148)
T COG4917 35 -------------EFND-----KGDIDTPGEYFE---------HPRWYHALITTLQDADVIIY-VHAANDPESRFPP--- 83 (148)
T ss_pred -------------eccC-----ccccCCchhhhh---------hhHHHHHHHHHhhccceeee-eecccCccccCCc---
Confidence 0111 124899996532 12222333445578896665 6677654333211
Q ss_pred HHHhCCCCCceEEEeccCcccC
Q 006958 196 AREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~ 217 (624)
.-.++-.+++|||+||.|+..
T Consensus 84 -~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 84 -GFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred -ccccccccceEEEEecccccc
Confidence 123455577999999999985
No 270
>PTZ00416 elongation factor 2; Provisional
Probab=98.53 E-value=4.4e-07 Score=106.25 Aligned_cols=133 Identities=21% Similarity=0.317 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|..++|||||+++|++.. |.+++.- .+. ..+.|... .|.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~------g~i~~~~---------~g~----------~~~~D~~~--~E~------ 64 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKA------GIISSKN---------AGD----------ARFTDTRA--DEQ------ 64 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhc------CCccccc---------CCc----------eeecccch--hhH------
Confidence 45689999999999999999999753 3322210 000 00111111 011
Q ss_pred hhCCCCCcccccEEEEEecC-------CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc
Q 006958 114 ITGKSKQISNIPIQLSIYSP-------NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~-------~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d 186 (624)
..| ..+....+.+..... ....++|+||||..+ +..-+...++.+|++|+ |+++..+
T Consensus 65 ~rg--iti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~-------------f~~~~~~al~~~D~ail-Vvda~~g 128 (836)
T PTZ00416 65 ERG--ITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVD-------------FSSEVTAALRVTDGALV-VVDCVEG 128 (836)
T ss_pred hhc--ceeeccceEEEeecccccccCCCceEEEEEcCCCHHh-------------HHHHHHHHHhcCCeEEE-EEECCCC
Confidence 011 112222333333211 134589999999543 22335677789998776 5566666
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006958 187 IATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 187 ~~~~~~~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
+..+.. .+++.+...+.|.|+++||+|+.
T Consensus 129 ~~~~t~-~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 129 VCVQTE-TVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cCccHH-HHHHHHHHcCCCEEEEEEChhhh
Confidence 666554 36666766788999999999997
No 271
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.49 E-value=1e-06 Score=96.10 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c--------ccHHHHHHHHHhCCCC
Q 006958 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I--------ATSDAIKLAREVDPTG 203 (624)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~--------~~~~~~~l~~~~d~~~ 203 (624)
.+...++|+|||| .+.+...+..++..+|+.||+|. ++.+ + .+.+.+.+++ ..|
T Consensus 82 ~~~~~i~liDtPG-------------h~df~~~~~~g~~~aD~aIlVVd-a~~G~~e~g~~~~~qT~eh~~~~~---~~g 144 (447)
T PLN00043 82 TTKYYCTVIDAPG-------------HRDFIKNMITGTSQADCAVLIID-STTGGFEAGISKDGQTREHALLAF---TLG 144 (447)
T ss_pred CCCEEEEEEECCC-------------HHHHHHHHHhhhhhccEEEEEEE-cccCceecccCCCchHHHHHHHHH---HcC
Confidence 3456899999999 33344445667789998888654 4433 2 2223333333 346
Q ss_pred Cc-eEEEeccCccc
Q 006958 204 ER-TFGVLTKLDLM 216 (624)
Q Consensus 204 ~r-ti~VltK~D~~ 216 (624)
.+ .|+++||+|+.
T Consensus 145 i~~iIV~vNKmD~~ 158 (447)
T PLN00043 145 VKQMICCCNKMDAT 158 (447)
T ss_pred CCcEEEEEEcccCC
Confidence 64 68889999986
No 272
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=3e-07 Score=85.25 Aligned_cols=151 Identities=17% Similarity=0.274 Sum_probs=94.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
=-+|+++|--||||||+|..|--..+ +|..|
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~-------vttvP------------------------------------------ 47 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTVP------------------------------------------ 47 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCc-------ccCCC------------------------------------------
Confidence 34899999999999999998865543 33355
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH-
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI- 193 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~- 193 (624)
+.||.-+.+... ...+++||.-| +..++.+...|..+.+.+|+||++.+.+. ..++.
T Consensus 48 ---TiGfnVE~v~yk-----n~~f~vWDvGG-------------q~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R-i~eak~ 105 (181)
T KOG0070|consen 48 ---TIGFNVETVEYK-----NISFTVWDVGG-------------QEKLRPLWKHYFQNTQGLIFVVDSSDRER-IEEAKE 105 (181)
T ss_pred ---ccccceeEEEEc-----ceEEEEEecCC-------------CcccccchhhhccCCcEEEEEEeCCcHHH-HHHHHH
Confidence 223333333332 46799999988 34457889999999999888776655432 22221
Q ss_pred HHHHHh---CCCCCceEEEeccCcccCccc--cHHHHHhCcccccCCCee--EEEeCChhhhccCCcHHHH
Q 006958 194 KLAREV---DPTGERTFGVLTKLDLMDKGT--NALEVLEGRSYRLQHPWV--GIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 194 ~l~~~~---d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~--~v~~~s~~~~~~~~~~~~~ 257 (624)
++.+.+ +..+.++++..||.|+...-+ ++.+.+.-..... ..|+ +..+.++.++.++++++..
T Consensus 106 eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 106 ELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHHH
Confidence 233333 334788999999999876543 3344443323332 4555 3445566666665555544
No 273
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1e-07 Score=85.10 Aligned_cols=107 Identities=12% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC--CccccHHHHHHHHHhCC-CCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN--QDIATSDAIKLAREVDP-TGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~--~d~~~~~~~~l~~~~d~-~~~rti~VltK 212 (624)
..|.+|||.| ++.+++++..|.+++=..+|...-.+ +.+....|+.-++...= ..--++++.||
T Consensus 67 ihLQlWDTAG-------------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK 133 (219)
T KOG0081|consen 67 IHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNK 133 (219)
T ss_pred EEEeeecccc-------------HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCc
Confidence 4789999999 88999999999999988777553332 23333444432222111 23347788999
Q ss_pred CcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
+|+.+...-..+-......+.+++|+..++.++.++.+.++.+
T Consensus 134 ~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~L 176 (219)
T KOG0081|consen 134 ADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELL 176 (219)
T ss_pred cchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHH
Confidence 9998764311111111134667889988888776665544433
No 274
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.47 E-value=4.5e-07 Score=87.63 Aligned_cols=145 Identities=16% Similarity=0.201 Sum_probs=84.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+|+|.+|+|||+|.-.+.+..|.+. .-| |-
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~------y~p-------ti--------------------------------- 36 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED------YDP-------TI--------------------------------- 36 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc------cCC-------Cc---------------------------------
Confidence 46899999999999999999998876221 011 00
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH-
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI- 193 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~- 193 (624)
..+-..++ .+. .....|.|+||+|- +....|-..|+...|+.+++. +.+..-+-+++.
T Consensus 37 ----ed~y~k~~--~v~-~~~~~l~ilDt~g~-------------~~~~~~~~~~~~~~~gF~lVy-sitd~~SF~~~~~ 95 (196)
T KOG0395|consen 37 ----EDSYRKEL--TVD-GEVCMLEILDTAGQ-------------EEFSAMRDLYIRNGDGFLLVY-SITDRSSFEEAKQ 95 (196)
T ss_pred ----cccceEEE--EEC-CEEEEEEEEcCCCc-------------ccChHHHHHhhccCcEEEEEE-ECCCHHHHHHHHH
Confidence 00001111 122 23457889999991 223566778999999887654 333222222222
Q ss_pred --H-HHHHhCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeeEEEeCChhhhcc
Q 006958 194 --K-LAREVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (624)
Q Consensus 194 --~-l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (624)
+ +.+..+....|+++|.||+|+...... ...+ ....+.+|+.++.....++++
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l----a~~~~~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL----ARSWGCAFIETSAKLNYNVDE 155 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH----HHhcCCcEEEeeccCCcCHHH
Confidence 2 323334455799999999999864321 1222 233445677777665544443
No 275
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.46 E-value=4.3e-07 Score=84.83 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPR 63 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~ 63 (624)
..|+++|.+|+|||||+|+|.|....+.
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~ 130 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKV 130 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceee
Confidence 4688999999999999999999876333
No 276
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.46 E-value=4.6e-07 Score=90.52 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
.+.|.|+|||-.|+|||||+++|++..+.|.+.-..|--||.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~-------------------------------------- 217 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTL-------------------------------------- 217 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchh--------------------------------------
Confidence 578999999999999999999999999988887666655510
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH-
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD- 191 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~- 191 (624)
.. ..-|....+.+.||=||++. -|..+...++.. ..-+..+|.|+-++.-.+.++..+.
T Consensus 218 h~---------------a~Lpsg~~vlltDTvGFisd----LP~~LvaAF~AT-LeeVaeadlllHvvDiShP~ae~q~e 277 (410)
T KOG0410|consen 218 HS---------------AHLPSGNFVLLTDTVGFISD----LPIQLVAAFQAT-LEEVAEADLLLHVVDISHPNAEEQRE 277 (410)
T ss_pred hh---------------ccCCCCcEEEEeechhhhhh----CcHHHHHHHHHH-HHHHhhcceEEEEeecCCccHHHHHH
Confidence 00 11234456889999999873 344466666554 4456789977776655555554443
Q ss_pred -HHHHHHHhCCC----CCceEEEeccCcccC
Q 006958 192 -AIKLAREVDPT----GERTFGVLTKLDLMD 217 (624)
Q Consensus 192 -~~~l~~~~d~~----~~rti~VltK~D~~~ 217 (624)
.+..+++++-. -.++|=|=||+|...
T Consensus 278 ~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 278 TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 34455555432 234666777777654
No 277
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.45 E-value=7.2e-06 Score=85.02 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.-+.|+|+|.+|||||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999874
No 278
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=1.7e-06 Score=76.89 Aligned_cols=120 Identities=22% Similarity=0.273 Sum_probs=83.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-|-.++|+|+.++|||.||..++...| --++. ||
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdss------------HT--------------------------------- 41 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSS------------HT--------------------------------- 41 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhh-ccccc------------ce---------------------------------
Confidence 477899999999999999999998776 11100 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~ 191 (624)
-+..|-...|.+. -....|.||||.| ++.++..+++|.+.+-..+|+....+.| -+...
T Consensus 42 ---iGveFgSrIinVG---gK~vKLQIWDTAG-------------QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtn 102 (214)
T KOG0086|consen 42 ---IGVEFGSRIVNVG---GKTVKLQIWDTAG-------------QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTN 102 (214)
T ss_pred ---eeeeecceeeeec---CcEEEEEEeeccc-------------HHHHHHHHHHHhccccceEEEEeccchhhHHHHHH
Confidence 0111222333322 2346799999999 8899999999999988777765444443 23355
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
|+.-++.+.+...-+|++.||-|+-..
T Consensus 103 WL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 103 WLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 777777787777778888999998654
No 279
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.6e-06 Score=75.87 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-+-.-+++|+.++|||.||.-++..+| ...||..+-
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf-------madcphtig------------------------------------- 45 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIG------------------------------------- 45 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccc-------------------------------------
Confidence 455778999999999999999998877 445662222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---ccccH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIATS 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~---d~~~~ 190 (624)
+-.-.-.+++++. ...|.+|||.| ++.++..+++|.+.+-..+++. +... --..+
T Consensus 46 -------vefgtriievsgq-kiklqiwdtag-------------qerfravtrsyyrgaagalmvy-ditrrstynhls 103 (215)
T KOG0097|consen 46 -------VEFGTRIIEVSGQ-KIKLQIWDTAG-------------QERFRAVTRSYYRGAAGALMVY-DITRRSTYNHLS 103 (215)
T ss_pred -------eecceeEEEecCc-EEEEEEeeccc-------------HHHHHHHHHHHhccccceeEEE-EehhhhhhhhHH
Confidence 0011112223332 25689999999 8889999999999877655543 3322 12235
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.|+.-++.+..-..-++++.||.|+-+..
T Consensus 104 swl~dar~ltnpnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 104 SWLTDARNLTNPNTVIFLIGNKADLESQR 132 (215)
T ss_pred HHHhhhhccCCCceEEEEecchhhhhhcc
Confidence 66666676655456677889999997654
No 280
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.39 E-value=4.7e-07 Score=85.73 Aligned_cols=29 Identities=31% Similarity=0.259 Sum_probs=25.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccc
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPR 63 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~ 63 (624)
..+|+|+|.+|+|||||+|+|+|....++
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~ 145 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV 145 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee
Confidence 46899999999999999999999876443
No 281
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.36 E-value=5.1e-07 Score=84.10 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=29.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-cccccc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRP 72 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p 72 (624)
..++|+++|.+|+||||++|+|+|....+.+.+ .+|+.+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 568999999999999999999999765444433 344444
No 282
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.36 E-value=1e-06 Score=85.00 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999998764
No 283
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.34 E-value=1.4e-06 Score=93.62 Aligned_cols=120 Identities=22% Similarity=0.277 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+--+||+||+.|+|||||+=+|++..|.| .++-|.|-..
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i~-------------------------------------- 46 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRIL-------------------------------------- 46 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccc---cccccCCccc--------------------------------------
Confidence 34599999999999999999999998732 2333333111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecC----CCcccc
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA----NQDIAT 189 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a----~~d~~~ 189 (624)
+.. =..|+..+.++|||+--. .-+..+.+-++++|.|.++ -++ +.|.-.
T Consensus 47 IPa-------------dvtPe~vpt~ivD~ss~~-------------~~~~~l~~EirkA~vi~lv-yavd~~~T~D~is 99 (625)
T KOG1707|consen 47 IPA-------------DVTPENVPTSIVDTSSDS-------------DDRLCLRKEIRKADVICLV-YAVDDESTVDRIS 99 (625)
T ss_pred cCC-------------ccCcCcCceEEEeccccc-------------chhHHHHHHHhhcCEEEEE-EecCChHHhhhhh
Confidence 110 123555679999997411 1134456677889965543 223 235556
Q ss_pred HHHHHHHHHhC--CCCCceEEEeccCcccCcccc
Q 006958 190 SDAIKLAREVD--PTGERTFGVLTKLDLMDKGTN 221 (624)
Q Consensus 190 ~~~~~l~~~~d--~~~~rti~VltK~D~~~~~~~ 221 (624)
..|+-++++.. ....|+|+|.||+|..+..+.
T Consensus 100 t~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 100 TKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 67888888775 346899999999999876543
No 284
>PRK12740 elongation factor G; Reviewed
Probab=98.33 E-value=2e-06 Score=99.20 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||..+ +...+..++..+|++++++ +++.+...+. ..+.+.+...+.|.++|+||+|
T Consensus 59 ~~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllvv-d~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D 123 (668)
T PRK12740 59 GHKINLIDTPGHVD-------------FTGEVERALRVLDGAVVVV-CAVGGVEPQT-ETVWRQAEKYGVPRIIFVNKMD 123 (668)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEEE-eCCCCcCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 46899999999532 2345677888999877755 4554443332 2344555556889999999999
Q ss_pred ccCc
Q 006958 215 LMDK 218 (624)
Q Consensus 215 ~~~~ 218 (624)
+...
T Consensus 124 ~~~~ 127 (668)
T PRK12740 124 RAGA 127 (668)
T ss_pred CCCC
Confidence 8754
No 285
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.33 E-value=3.9e-06 Score=86.01 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=57.6
Q ss_pred CCcEEEeCCCCccccCCCCC-ccHHHHHHHHHHHhhc--------------CCCEEEEEEecCCCccccHHHHHHHHHhC
Q 006958 136 VNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYVE--------------KPSCIILAISPANQDIATSDAIKLAREVD 200 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~-~~~~~~i~~~~~~yi~--------------~~~~iiL~V~~a~~d~~~~~~~~l~~~~d 200 (624)
.+|++|||||+.+.-..... +.+..-+......|+. +.||++.++-|....+...|.. ..+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHh
Confidence 47999999999876554221 3345556666666762 4577777677777777777765 556665
Q ss_pred CCCCceEEEeccCcccCcc
Q 006958 201 PTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (624)
. ....|-|+.|.|.+...
T Consensus 161 ~-~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDD 178 (373)
T ss_pred c-ccCeeeeeeccccCCHH
Confidence 5 57899999999998654
No 286
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.32 E-value=4.1e-06 Score=91.34 Aligned_cols=66 Identities=24% Similarity=0.286 Sum_probs=41.5
Q ss_pred CCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---------ccHHHHHHHHHhCCCC
Q 006958 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDPTG 203 (624)
Q Consensus 133 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~---------~~~~~~~l~~~~d~~~ 203 (624)
.+...++||||||. .+.+.++ ...+..+|+++|+| ++..+. .+.+.+.+++ ..|
T Consensus 82 ~~~~~i~lIDtPGh------------~~f~~~~-~~g~~~aD~ailVV-da~~G~~e~~~~~~~qT~eh~~~~~---~~g 144 (446)
T PTZ00141 82 TPKYYFTIIDAPGH------------RDFIKNM-ITGTSQADVAILVV-ASTAGEFEAGISKDGQTREHALLAF---TLG 144 (446)
T ss_pred cCCeEEEEEECCCh------------HHHHHHH-HHhhhhcCEEEEEE-EcCCCceecccCCCccHHHHHHHHH---HcC
Confidence 34568999999992 2233444 44567899877755 555443 3334444444 346
Q ss_pred Cc-eEEEeccCcc
Q 006958 204 ER-TFGVLTKLDL 215 (624)
Q Consensus 204 ~r-ti~VltK~D~ 215 (624)
.| .|+++||+|.
T Consensus 145 i~~iiv~vNKmD~ 157 (446)
T PTZ00141 145 VKQMIVCINKMDD 157 (446)
T ss_pred CCeEEEEEEcccc
Confidence 65 6789999994
No 287
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=9.4e-07 Score=91.11 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=66.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.++.+||-||+|||||+|||+....-+.....||--|.+-.. .. .| .- +.+ ...+.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv-~v-----------------~d-~r----l~~-L~~~~ 58 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVV-YV-----------------PD-CR----LDE-LAEIV 58 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEE-ec-----------------Cc-hH----HHH-HHHhc
Confidence 478999999999999999999988656667788888833321 00 00 00 000 01111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS 181 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~ 181 (624)
+ -++. .+ -..+.|||.+|++..++.|. -+-+-...-|+++|+|+.+|-
T Consensus 59 ~----c~~k--~~------~~~ve~vDIAGLV~GAs~Ge------GLGNkFL~~IRevdaI~hVVr 106 (372)
T COG0012 59 K----CPPK--IR------PAPVEFVDIAGLVKGASKGE------GLGNKFLDNIREVDAIIHVVR 106 (372)
T ss_pred C----CCCc--EE------eeeeEEEEecccCCCcccCC------CcchHHHHhhhhcCeEEEEEE
Confidence 1 0011 11 14689999999999988742 234556677889999888653
No 288
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=3.1e-06 Score=87.48 Aligned_cols=83 Identities=24% Similarity=0.435 Sum_probs=57.1
Q ss_pred CCcEEEeCCCCccccCCCCC-ccHHHHHHHHHHHhhc-------------CCCEEEEEEecCCCccccHHHHHHHHHhCC
Q 006958 136 VNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYVE-------------KPSCIILAISPANQDIATSDAIKLAREVDP 201 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~-~~~~~~i~~~~~~yi~-------------~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~ 201 (624)
.+||+|||||+.+.-..... +-+..-+.+....|+. +.+|++.++.|....+..-|.. +.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHhc
Confidence 47899999999875544221 2344455566666662 4677777777777777777765 4455543
Q ss_pred CCCceEEEeccCcccCccc
Q 006958 202 TGERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 202 ~~~rti~VltK~D~~~~~~ 220 (624)
...+|-|+.|.|.+.+..
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 688999999999987653
No 289
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.31 E-value=5.7e-06 Score=88.56 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=48.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHH-hhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRS-YVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~-yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
.++.||||||.... ....+.++..- ...+++.++| |+++..+ +++...++.+...-..+-+|+||+|
T Consensus 183 ~DvViIDTaGr~~~--------d~~lm~El~~i~~~~~p~e~lL-Vlda~~G---q~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ--------EDSLFEEMLQVAEAIQPDNIIF-VMDGSIG---QAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCEEEEECCCCCcc--------hHHHHHHHHHHhhhcCCcEEEE-EeccccC---hhHHHHHHHHHhccCCcEEEEECcc
Confidence 68999999995432 12233333221 1235776555 5556532 3445556666544467889999999
Q ss_pred ccCccccHHHHHh
Q 006958 215 LMDKGTNALEVLE 227 (624)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (624)
...++..++.+..
T Consensus 251 ~~argG~aLs~~~ 263 (429)
T TIGR01425 251 GHAKGGGALSAVA 263 (429)
T ss_pred CCCCccHHhhhHH
Confidence 9887766655543
No 290
>PTZ00099 rab6; Provisional
Probab=98.29 E-value=2e-06 Score=81.85 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHHHHHHHHhCCCCCceEEEecc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~-~~~~~l~~~~d~~~~rti~VltK 212 (624)
...+.|||||| .+.+..+...|++.+|++|+++...+. .+.. ..|+..+......+.++++|.||
T Consensus 28 ~v~l~iwDt~G-------------~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAG-------------QERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCC-------------hHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 46799999999 344566778899999988776543332 1222 23443333333345788999999
Q ss_pred CcccCccc-cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHHHhHh
Q 006958 213 LDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265 (624)
Q Consensus 213 ~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f 265 (624)
+|+..... ...+... .....+..|+.+++.++.++.+.+..+.....+.+-+
T Consensus 95 ~DL~~~~~v~~~e~~~-~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQ-KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred cccccccCCCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 99964321 1111111 1112334577888888888888877777666554433
No 291
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.29 E-value=1.3e-06 Score=79.92 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=23.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..++++|.+|+|||||+|+|.|..+
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3899999999999999999999875
No 292
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=1.4e-05 Score=83.77 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=83.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC--------CcceeeccCCCCccCChHHHHHHH
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEI 107 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~i 107 (624)
..|++||.+|+||||++..|.+. +...+. .. -+..++.. ..|+.....+-....+...+.+.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~~Gk-----kV---glI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL 312 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHGKKK-----TV---GFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL 312 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHHcCC-----cE---EEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH
Confidence 57999999999999999999864 211110 11 11122211 222222222222223444454444
Q ss_pred HHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCC
Q 006958 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQ 185 (624)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a~~ 185 (624)
...... ...++.||||||-.... ...+.++ .+++ ..++.++| |++++
T Consensus 313 ~~lk~~--------------------~~~DvVLIDTaGRs~kd--------~~lm~EL-~~~lk~~~PdevlL-VLsAT- 361 (436)
T PRK11889 313 TYFKEE--------------------ARVDYILIDTAGKNYRA--------SETVEEM-IETMGQVEPDYICL-TLSAS- 361 (436)
T ss_pred HHHHhc--------------------cCCCEEEEeCccccCcC--------HHHHHHH-HHHHhhcCCCeEEE-EECCc-
Confidence 332110 12589999999964321 2233333 2333 24665555 45654
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006958 186 DIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 186 d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
....+....++.+... ...=+|+||+|.......+.++..
T Consensus 362 -tk~~d~~~i~~~F~~~-~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 362 -MKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred -cChHHHHHHHHHhcCC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 2345556677777663 456789999999988877777765
No 293
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.1e-05 Score=83.76 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=50.4
Q ss_pred CcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-------cc--cH
Q 006958 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-------IA--TS 190 (624)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-------~~--~~ 190 (624)
|++-+.-......+ .+.+||+|+|| . .+.+.+|+.. +..+|+.||+| +|+.+ .. +.
T Consensus 70 GvTi~~~~~~fet~-k~~~tIiDaPG-H-----------rdFvknmItG-asqAD~aVLVV-~a~~~efE~g~~~~gQtr 134 (428)
T COG5256 70 GVTIDVAHSKFETD-KYNFTIIDAPG-H-----------RDFVKNMITG-ASQADVAVLVV-DARDGEFEAGFGVGGQTR 134 (428)
T ss_pred ceEEEEEEEEeecC-CceEEEeeCCc-h-----------HHHHHHhhcc-hhhccEEEEEE-ECCCCccccccccCCchh
Confidence 44444434444443 36899999999 2 3344555433 35689888855 55443 22 22
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+..-+++.+. -...|+++||+|.++-.
T Consensus 135 EH~~La~tlG--i~~lIVavNKMD~v~wd 161 (428)
T COG5256 135 EHAFLARTLG--IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred HHHHHHHhcC--CceEEEEEEcccccccC
Confidence 3444666654 36788999999999743
No 294
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.23 E-value=2.6e-07 Score=84.29 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=46.8
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--ccccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~--d~~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..+.+|||.| ++.+..+++.|.+.+.+.+|+...... .-+..+|..-+.. .-...|+++|-||+
T Consensus 69 vr~mlWdtag-------------qeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~-e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 69 VRSMLWDTAG-------------QEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQK-ETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHHhcc-------------chhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHH-HhccCCeEEeeccc
Confidence 3467899999 677788999999999988775532221 1222333322211 22368999999999
Q ss_pred cccCcc
Q 006958 214 DLMDKG 219 (624)
Q Consensus 214 D~~~~~ 219 (624)
|+++..
T Consensus 135 Dlveds 140 (246)
T KOG4252|consen 135 DLVEDS 140 (246)
T ss_pred hhhHhh
Confidence 998753
No 295
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.23 E-value=1.8e-06 Score=77.25 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=73.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.||++|.--+|||||+=+.+..+|. . + .+..+.
T Consensus 15 K~VLLGEGCVGKtSLVLRy~EnkFn------------------~--------------k---HlsTlQ------------ 47 (218)
T KOG0088|consen 15 KIVLLGEGCVGKTSLVLRYVENKFN------------------C--------------K---HLSTLQ------------ 47 (218)
T ss_pred EEEEEcCCccchhHHHHHHHHhhcc------------------h--------------h---hHHHHH------------
Confidence 7999999999999999999988871 0 0 000011
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
.+|-.+.+. +.+ ...+|.||||.| ++.+..+---|.+.+|..+|+. +.+..-+-+....++
T Consensus 48 --ASF~~kk~n--~ed-~ra~L~IWDTAG-------------QErfHALGPIYYRgSnGalLVy-DITDrdSFqKVKnWV 108 (218)
T KOG0088|consen 48 --ASFQNKKVN--VED-CRADLHIWDTAG-------------QERFHALGPIYYRGSNGALLVY-DITDRDSFQKVKNWV 108 (218)
T ss_pred --HHHhhcccc--ccc-ceeeeeeeeccc-------------hHhhhccCceEEeCCCceEEEE-eccchHHHHHHHHHH
Confidence 011122222 222 346899999999 6667777777999999988754 333222223332333
Q ss_pred ---HHhCCCCCceEEEeccCcccCc
Q 006958 197 ---REVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 197 ---~~~d~~~~rti~VltK~D~~~~ 218 (624)
+....+..-.++|.||+|+-..
T Consensus 109 ~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 109 LELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred HHHHHHhCCeeEEEEecCcccHHHh
Confidence 4444556678899999998654
No 296
>PRK13768 GTPase; Provisional
Probab=98.21 E-value=8.4e-06 Score=82.29 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcC--CCEEEEEEecCCCccccHH-----HHHHHHHhCCCCCceEE
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK--PSCIILAISPANQDIATSD-----AIKLAREVDPTGERTFG 208 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~--~~~iiL~V~~a~~d~~~~~-----~~~l~~~~d~~~~rti~ 208 (624)
.++.+|||||....... ......++ +++.. ++++++ |+++.......+ ++.+..+. ..+.+.++
T Consensus 97 ~~~~~~d~~g~~~~~~~------~~~~~~~~-~~l~~~~~~~ii~-liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF------RESGRKLV-ERLSGSSKSVVVF-LIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHhh------hHHHHHHH-HHHHhcCCeEEEE-EechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 47999999997654321 11112222 33332 665544 556543222222 22222222 34789999
Q ss_pred EeccCcccCcc
Q 006958 209 VLTKLDLMDKG 219 (624)
Q Consensus 209 VltK~D~~~~~ 219 (624)
|+||+|+.+..
T Consensus 168 v~nK~D~~~~~ 178 (253)
T PRK13768 168 VLNKADLLSEE 178 (253)
T ss_pred EEEhHhhcCch
Confidence 99999998764
No 297
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=4.7e-06 Score=78.89 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=46.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc---CCCEEEEEEecCCCccccHHHHHHH----HH--hCCCCCce
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE---KPSCIILAISPANQDIATSDAIKLA----RE--VDPTGERT 206 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~---~~~~iiL~V~~a~~d~~~~~~~~l~----~~--~d~~~~rt 206 (624)
..+++||.||-. ..+.....|+. .+-+||++|.++.-+-...+...++ -. ...++.++
T Consensus 82 ~~~~LVD~PGH~-------------rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~v 148 (238)
T KOG0090|consen 82 ENVTLVDLPGHS-------------RLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPV 148 (238)
T ss_pred cceEEEeCCCcH-------------HHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCE
Confidence 348999999943 33555566665 5777888777765443333333222 22 13567889
Q ss_pred EEEeccCcccCccc
Q 006958 207 FGVLTKLDLMDKGT 220 (624)
Q Consensus 207 i~VltK~D~~~~~~ 220 (624)
++..||-|+....+
T Consensus 149 LIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 149 LIACNKQDLFTAKT 162 (238)
T ss_pred EEEecchhhhhcCc
Confidence 99999999976554
No 298
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=4.1e-06 Score=94.85 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=90.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.-.|.++|+--+||||+.++|+-.. |..++ +-+++ .+..+.||.+.. +
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~----------------~g~~~~D~~e~E------q-- 57 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH----------------DGAATMDWMEQE------Q-- 57 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc----------------CCCccCCCcHHH------H--
Confidence 56789999999999999999998543 33333 21111 112244444332 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.++..+....+.+...+ ...++||||||.++.. .-|.+.++-.|+.++ |+++..+...+...
T Consensus 58 --eRGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt-------------~EV~rslrvlDgavv-VvdaveGV~~QTEt 119 (697)
T COG0480 58 --ERGITITSAATTLFWKG--DYRINLIDTPGHVDFT-------------IEVERSLRVLDGAVV-VVDAVEGVEPQTET 119 (697)
T ss_pred --hcCCEEeeeeeEEEEcC--ceEEEEeCCCCccccH-------------HHHHHHHHhhcceEE-EEECCCCeeecHHH
Confidence 22334455566665544 4689999999977643 336667777887665 55666667666554
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+.|+++..+.|.|+++||+|.+-.
T Consensus 120 -v~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 120 -VWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred -HHHHHhhcCCCeEEEEECcccccc
Confidence 667888889999999999999754
No 299
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.20 E-value=7.7e-06 Score=78.51 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=48.0
Q ss_pred CCcEEEeCCCCccccCCCC-CccHHHHHHHHHHHhhc--------------CCCEEEEEEecCCCccccHHHHHHHHHhC
Q 006958 136 VNLTLIDLPGLTKVAVEGQ-PESIVEDIENMVRSYVE--------------KPSCIILAISPANQDIATSDAIKLAREVD 200 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~-~~~~~~~i~~~~~~yi~--------------~~~~iiL~V~~a~~d~~~~~~~~l~~~~d 200 (624)
.+|+++||||+.+.-..+. =+.+.+-|.+.-..|++ +.+|++.++-|....+..-|.. .++.+.
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDie-flkrLt 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIE-FLKRLT 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHH-HHHHHh
Confidence 4699999999986544321 12244444444444442 4567666666655555554443 344443
Q ss_pred CCCCceEEEeccCcccCc
Q 006958 201 PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 201 ~~~~rti~VltK~D~~~~ 218 (624)
. -..++-|+-|.|.+.-
T Consensus 183 ~-vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 183 E-VVNVVPVIAKADTLTL 199 (336)
T ss_pred h-hheeeeeEeecccccH
Confidence 2 3578899999998643
No 300
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.19 E-value=5.7e-06 Score=84.70 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=24.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccc
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPR 63 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~ 63 (624)
..+|+|||.+|+||||++|+|+|....++
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 45899999999999999999999875333
No 301
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=2.5e-06 Score=77.97 Aligned_cols=111 Identities=15% Similarity=0.251 Sum_probs=73.0
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.|||+-| ++..+++...|...+++||.++++.+.+ +.. +.-..+.++-.-.|.|.++.+||
T Consensus 69 ~~l~fwdlgG-------------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank 135 (197)
T KOG0076|consen 69 APLSFWDLGG-------------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK 135 (197)
T ss_pred ceeEEEEcCC-------------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence 5799999999 6777999999999999988866655532 221 11222344445568999999999
Q ss_pred CcccCccc--cHHHHHh-Cccc-ccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 213 LDLMDKGT--NALEVLE-GRSY-RLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 213 ~D~~~~~~--~~~~~l~-~~~~-~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
-|+-+..+ ++..++. .+.. .-...+.+|....++++++++.+.....
T Consensus 136 qd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 136 QDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 99876543 2222222 1111 2234677777777788877777766544
No 302
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=3.1e-06 Score=88.36 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=27.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p 72 (624)
-.+.|||-||+||||+||+|+|... ..++++|
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~P 164 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRP 164 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCC
Confidence 3699999999999999999999986 5666666
No 303
>PRK12289 GTPase RsgA; Reviewed
Probab=98.15 E-value=4e-06 Score=88.18 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
.++|+|.+|+|||||||+|+|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 589999999999999999998754
No 304
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.14 E-value=2.8e-06 Score=82.19 Aligned_cols=150 Identities=21% Similarity=0.250 Sum_probs=74.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC--------CcceeeccCCCC---ccCChHHH-H
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRK---KFTDFAAV-R 104 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~---~~~~~~~v-~ 104 (624)
.|++||++|+||||.+-.|...-. .--+.+ -+.+.+.- +.|++.+..|-. ...|..++ .
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~------~~~~~v---~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~ 73 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLK------LKGKKV---ALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAR 73 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH------HTT--E---EEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHh------hccccc---eeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHH
Confidence 489999999999999999886521 011222 22233221 334443333211 11122222 2
Q ss_pred HHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC
Q 006958 105 KEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN 184 (624)
Q Consensus 105 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~ 184 (624)
+.+++... +..++.||||||..... .+..+.++++.. .+ .++-++| |.+++
T Consensus 74 ~~l~~~~~---------------------~~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~-~~-~~~~~~L-Vlsa~ 124 (196)
T PF00448_consen 74 EALEKFRK---------------------KGYDLVLIDTAGRSPRD-----EELLEELKKLLE-AL-NPDEVHL-VLSAT 124 (196)
T ss_dssp HHHHHHHH---------------------TTSSEEEEEE-SSSSTH-----HHHHHHHHHHHH-HH-SSSEEEE-EEEGG
T ss_pred HHHHHHhh---------------------cCCCEEEEecCCcchhh-----HHHHHHHHHHhh-hc-CCccceE-EEecc
Confidence 22222111 22679999999965321 112233333322 22 4554555 55665
Q ss_pred CccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006958 185 QDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 185 ~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
... ++...+....+. ...+=+|+||.|.......+.+++.
T Consensus 125 ~~~--~~~~~~~~~~~~-~~~~~lIlTKlDet~~~G~~l~~~~ 164 (196)
T PF00448_consen 125 MGQ--EDLEQALAFYEA-FGIDGLILTKLDETARLGALLSLAY 164 (196)
T ss_dssp GGG--HHHHHHHHHHHH-SSTCEEEEESTTSSSTTHHHHHHHH
T ss_pred cCh--HHHHHHHHHhhc-ccCceEEEEeecCCCCcccceeHHH
Confidence 432 222222222222 2234677999999888776666654
No 305
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.13 E-value=1.2e-05 Score=82.82 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
-.+|+|||.+|+||||++|+|+|...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 45899999999999999999999875
No 306
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.13 E-value=6.2e-06 Score=86.42 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=62.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc-ccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..+.+||-||+|||||+|+|++... -+.....||..|..-.+ ..+ +.. ++.+ . ..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v-~v~------------d~r---~d~L----~----~~ 58 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV-NPS------------DPR---LDLL----A----IY 58 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE-Eec------------hhH---HHHH----H----HH
Confidence 4689999999999999999999875 33344677777733221 110 000 0000 0 01
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecC
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a 183 (624)
... ... ....+.++|.||++..+..+. ...+-..+.++++|+|+.+| .+
T Consensus 59 ~~~------------~~~-~~a~i~~~DiaGlv~gAs~g~------Glgn~fL~~ir~~d~l~hVv-r~ 107 (368)
T TIGR00092 59 IKP------------EKV-PPTTTEFVDIAGLVGGASKGE------GLGNQFLANIREVDIIQHVV-RC 107 (368)
T ss_pred hCC------------cCc-CCceEEEEeccccccchhccc------CcchHHHHHHHhCCEEEEEE-eC
Confidence 100 000 013579999999998776532 12445677888999877654 44
No 307
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.13 E-value=8.7e-06 Score=80.63 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=26.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC--Cccccccc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR--DFLPRGSG 66 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~--~~lP~~~~ 66 (624)
+.-.|+|+|.+++|||+|||.|+|. . |+.+.+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~-f~~~~~ 39 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSG-FDVMDT 39 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCC-eEecCC
Confidence 4568999999999999999999998 5 455544
No 308
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.12 E-value=1.6e-05 Score=78.04 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCC------------CCcceeec----cCCC-Cc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG------------GTDYAEFL----HAPR-KK 96 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~------------~~~~~~~~----~~~~-~~ 96 (624)
..+-|+|||-.||||||++.+|.+.-. .. -| .|-++.|...-. ...|.+.+ -.|+ ..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~---~~-ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH--AK---KT-PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh--hc---cC-CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 566899999999999999999987522 11 11 144444322100 01222211 1222 11
Q ss_pred c-------CChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHh
Q 006958 97 F-------TDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSY 169 (624)
Q Consensus 97 ~-------~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~y 169 (624)
. +.|+++.+.|++..+ ..+..||||||=+..-.-..+- .-++..+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~----------------------~~~~~liDTPGQIE~FtWSAsG------sIIte~l 143 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAE----------------------EFDYVLIDTPGQIEAFTWSASG------SIITETL 143 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhc----------------------ccCEEEEcCCCceEEEEecCCc------cchHhhH
Confidence 1 245555555444322 2568999999955432211111 1122233
Q ss_pred hcCCCEEEEEEecCCCcccc----HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 170 VEKPSCIILAISPANQDIAT----SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 170 i~~~~~iiL~V~~a~~d~~~----~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
...-.+||..|++....... +..+-...-+-....|+|+|+||.|+.+.+
T Consensus 144 ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 144 ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 33334556556554332221 223323333455689999999999998865
No 309
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.11 E-value=1.2e-05 Score=79.55 Aligned_cols=119 Identities=20% Similarity=0.320 Sum_probs=67.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+|+++|..+|||||..+.|.+. ..|++.. -+|-.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCce-----------------------------------------
Confidence 5899999999999999999986 4455432 0111110
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC-Ccccc----
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN-QDIAT---- 189 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~-~d~~~---- 189 (624)
.-.+...+..++.+||.||-...-.. .+...-....++..++|.|+ ++. .++..
T Consensus 39 ------------~~~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~~LIyV~-D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 39 ------------KSHVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVGVLIYVF-DAQSDDYDEDLAY 97 (232)
T ss_dssp ------------EEEEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTESEEEEEE-ETT-STCHHHHHH
T ss_pred ------------EEEEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccCEEEEEE-EcccccHHHHHHH
Confidence 11133344568999999995532211 00111223457788777655 555 44332
Q ss_pred -HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 190 -SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 190 -~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
...++.+.+..| +....+.+.|+|++..+
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 223445667777 68889999999998653
No 310
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.10 E-value=4.7e-06 Score=84.13 Aligned_cols=101 Identities=24% Similarity=0.341 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.-+.|.+||-||+||||++|+|+....-|.....||--|.+-+. ..++..| +.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V-------------~v~d~Rf--------------d~ 71 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARV-------------EVPDSRF--------------DL 71 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceecccccee-------------ecCchHH--------------HH
Confidence 34589999999999999999999987655555667777633331 0111111 11
Q ss_pred hhCCCCCcccccEEEEEecCCC---CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEE
Q 006958 114 ITGKSKQISNIPIQLSIYSPNV---VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAI 180 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V 180 (624)
... +++|.. ..|+++|..|+++.++.|+. ..+-..+.|+.+|+|+-+|
T Consensus 72 l~~-------------~Y~~~~~vpa~l~v~DIAGLvkGAs~G~G------LGN~FLs~iR~vDaifhVV 122 (391)
T KOG1491|consen 72 LCP-------------IYGPKSKVPAFLTVYDIAGLVKGASAGEG------LGNKFLSHIRHVDAIFHVV 122 (391)
T ss_pred HHH-------------hcCCcceeeeeEEEEeecccccCcccCcC------chHHHHHhhhhccceeEEE
Confidence 111 222221 37999999999999887532 3555677888999987755
No 311
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=2.5e-05 Score=88.79 Aligned_cols=151 Identities=22% Similarity=0.262 Sum_probs=83.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC--------CcceeeccCCCCccCChHHHHHHHH
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEIS 108 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~i~ 108 (624)
.|++||.+|+||||++..|.+.-. +.... .. +-+..++.. ..|++....+.....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~---kk---V~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGA---DQ---LALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCC---Ce---EEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 679999999999999999998631 22110 01 111122211 3344444444444445555554443
Q ss_pred HHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc
Q 006958 109 DETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA 188 (624)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~ 188 (624)
+. . ..+++||||||...... .+.+.+..+. . ...++-++| |++++. .
T Consensus 260 ~~----~-------------------~~D~VLIDTAGRs~~d~-----~l~eel~~l~-~-~~~p~e~~L-VLsAt~--~ 306 (767)
T PRK14723 260 AL----G-------------------DKHLVLIDTVGMSQRDR-----NVSEQIAMLC-G-VGRPVRRLL-LLNAAS--H 306 (767)
T ss_pred Hh----c-------------------CCCEEEEeCCCCCccCH-----HHHHHHHHHh-c-cCCCCeEEE-EECCCC--c
Confidence 21 1 24799999999654221 1222222221 1 223444445 556653 2
Q ss_pred cHHHHHHHHHhCCCC--CceEEEeccCcccCccccHHHHHh
Q 006958 189 TSDAIKLAREVDPTG--ERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 189 ~~~~~~l~~~~d~~~--~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
..+..++++.+.... ..+=+|+||.|.......+.+++.
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 233334555554321 356688999999988877777765
No 312
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.08 E-value=4.6e-06 Score=80.52 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
-+|+++|-||+||||||..|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 489999999999999999999864
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=3.4e-05 Score=80.75 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=82.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC--------CcceeeccCCCCccCChHHHHHH
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKE 106 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~ 106 (624)
-..|+++|++|+||||++..|... +...+ ... .+...+.. ..|+.....|-....+..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g-----~~V---~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQN-----RTV---GFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcC-----CeE---EEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 346889999999999999999854 32222 111 12223221 12333222222223455555544
Q ss_pred HHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCC
Q 006958 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPAN 184 (624)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~ 184 (624)
+..... ....++.||||||.... ..+.+.++ ..+.. .++.++| |.+++
T Consensus 277 l~~l~~--------------------~~~~D~VLIDTAGr~~~--------d~~~l~EL-~~l~~~~~p~~~~L-VLsag 326 (407)
T PRK12726 277 VQYMTY--------------------VNCVDHILIDTVGRNYL--------AEESVSEI-SAYTDVVHPDLTCF-TFSSG 326 (407)
T ss_pred HHHHHh--------------------cCCCCEEEEECCCCCcc--------CHHHHHHH-HHHhhccCCceEEE-ECCCc
Confidence 443211 01258999999996531 12333333 22332 4564444 55554
Q ss_pred CccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006958 185 QDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 185 ~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
....+...+++.+... ...-+|+||.|.......+.++..
T Consensus 327 --~~~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 327 --MKSADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred --ccHHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 3344555566655543 345678999999888777777654
No 314
>PRK12288 GTPase RsgA; Reviewed
Probab=98.07 E-value=6.8e-06 Score=86.44 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
.++++|.+|+|||||||+|+|...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 589999999999999999999764
No 315
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.06 E-value=1.1e-05 Score=81.12 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..++++|.+|+|||||+|+|.|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 5899999999999999999998753
No 316
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.04 E-value=7.8e-05 Score=75.53 Aligned_cols=152 Identities=21% Similarity=0.277 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC--------CcceeeccCCCCccCChHHHHH
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRK 105 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~ 105 (624)
+.+.|+++|.+++||||++..|++. +...+. .+.+...+.. ..|+....-+-....+...+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~~--------~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~ 144 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGKKK--------TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR 144 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHcCC--------eEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHH
Confidence 3479999999999999999999875 211110 0111122211 1111111111111123344443
Q ss_pred HHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecC
Q 006958 106 EISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPA 183 (624)
Q Consensus 106 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a 183 (624)
.+..... . ...++.||||||-.... ...++++. .++ ..++-++| |+++
T Consensus 145 ~l~~l~~-~-------------------~~~D~ViIDt~Gr~~~~--------~~~l~el~-~~~~~~~~~~~~L-Vl~a 194 (270)
T PRK06731 145 ALTYFKE-E-------------------ARVDYILIDTAGKNYRA--------SETVEEMI-ETMGQVEPDYICL-TLSA 194 (270)
T ss_pred HHHHHHh-c-------------------CCCCEEEEECCCCCcCC--------HHHHHHHH-HHHhhhCCCeEEE-EEcC
Confidence 3332110 0 12689999999954321 22333332 222 24554455 5566
Q ss_pred CCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006958 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 184 ~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
+ ...+++...++.+.. -...=+|+||.|.......+.++..
T Consensus 195 ~--~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~~~ 235 (270)
T PRK06731 195 S--MKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPA 235 (270)
T ss_pred c--cCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHHHH
Confidence 5 234566667787766 3456788999999988777777654
No 317
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.02 E-value=2.3e-05 Score=73.16 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
|.++++|..+|||||+++.+.+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 78999999999999999999876
No 318
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.02 E-value=8.9e-06 Score=77.05 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..+.++++|.+|+||||++|+|.+..+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999999876
No 319
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.02 E-value=5.9e-05 Score=67.45 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=48.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC----CCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP----TGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~----~~~rti~Vlt 211 (624)
..|.|.||.|+...+ .++-+.|++-+|+.+|+..+++.. +-+....+-+++|. ...++++..|
T Consensus 60 E~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~e-Sf~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPE-SFQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred heEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHH-HHHHHHHHHHHHhhccccccccEEEEec
Confidence 478999999976531 456788999999999877665521 11222223345543 3467888899
Q ss_pred cCcccCccc
Q 006958 212 KLDLMDKGT 220 (624)
Q Consensus 212 K~D~~~~~~ 220 (624)
|.|+..+.+
T Consensus 127 ~rdr~~p~~ 135 (198)
T KOG3883|consen 127 KRDRAEPRE 135 (198)
T ss_pred hhhcccchh
Confidence 999986654
No 320
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.00 E-value=2.5e-05 Score=77.12 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
+-+.|.|-|.|++|||||+++|...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999854
No 321
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=3.5e-05 Score=81.31 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-.++++|++|+||||++..|.+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999975
No 322
>PRK14974 cell division protein FtsY; Provisional
Probab=97.99 E-value=1.3e-05 Score=83.62 Aligned_cols=81 Identities=30% Similarity=0.454 Sum_probs=49.8
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.++.||||||...... +....++.+.. .-++|.++| |.++.. .+++...++.....-...-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~~-----~lm~eL~~i~~--~~~pd~~iL-Vl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDA-----NLMDELKKIVR--VTKPDLVIF-VGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcH-----HHHHHHHHHHH--hhCCceEEE-eecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 5799999999764221 12333333321 235776665 556643 345555566554433457899999999
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
...+..+..+..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 888776666654
No 323
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.99 E-value=3.5e-05 Score=90.87 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
.+.++|||||| .+.+..+...+...+|+++|++ +++.++..+.. ..+..+...+.|+|+|+||+|
T Consensus 525 ~p~i~fiDTPG-------------he~F~~lr~~g~~~aDivlLVV-Da~~Gi~~qT~-e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPG-------------HEAFTSLRKRGGSLADLAVLVV-DINEGFKPQTI-EAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCC-------------cHHHHHHHHhhcccCCEEEEEE-ECcccCCHhHH-HHHHHHHHcCCCEEEEEECCC
Confidence 46799999999 2334555566778899777655 56554444322 233333345789999999999
Q ss_pred ccC
Q 006958 215 LMD 217 (624)
Q Consensus 215 ~~~ 217 (624)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 324
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=6.5e-05 Score=81.86 Aligned_cols=80 Identities=28% Similarity=0.297 Sum_probs=44.8
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.++.||||||...... ...+.+..+ .... ... .++|++++. ...++...++.+... ...-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D~-----~l~eeL~~L-~aa~-~~a--~lLVLpAts--s~~Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRDR-----ALAAQLNWL-RAAR-QVT--SLLVLPANA--HFSDLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhhH-----HHHHHHHHH-HHhh-cCC--cEEEEECCC--ChhHHHHHHHHHHhh-CCeEEEEecCcC
Confidence 6899999999753211 112222222 2222 222 233556653 234444455555442 456799999999
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
......+++++.
T Consensus 497 t~~lG~aLsv~~ 508 (559)
T PRK12727 497 TGRFGSALSVVV 508 (559)
T ss_pred ccchhHHHHHHH
Confidence 877666677654
No 325
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=8.6e-05 Score=79.59 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=80.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC--------CcceeeccCCCCccCChHHHHHHH
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEI 107 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~i 107 (624)
..|++||..|+||||++..|.|...+-.+ +..+.+...+.- ..|+.....+.....+..++...+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~-------~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al 264 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHG-------ADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML 264 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH
Confidence 47999999999999999999885211000 001111122111 233333333333333433332222
Q ss_pred HHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006958 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (624)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~ 187 (624)
. .. ...++.+|||+|...... ...+.+..+. . ...+.-.+| |++++.
T Consensus 265 ~----~l-------------------~~~d~VLIDTaGrsqrd~-----~~~~~l~~l~-~-~~~~~~~~L-Vl~at~-- 311 (420)
T PRK14721 265 H----EL-------------------RGKHMVLIDTVGMSQRDQ-----MLAEQIAMLS-Q-CGTQVKHLL-LLNATS-- 311 (420)
T ss_pred H----Hh-------------------cCCCEEEecCCCCCcchH-----HHHHHHHHHh-c-cCCCceEEE-EEcCCC--
Confidence 1 11 235799999999764311 1222233221 1 122333444 556663
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006958 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 188 ~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
..++..++++.+... ...=+|+||.|.......+.+++.
T Consensus 312 ~~~~~~~~~~~f~~~-~~~~~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 312 SGDTLDEVISAYQGH-GIHGCIITKVDEAASLGIALDAVI 350 (420)
T ss_pred CHHHHHHHHHHhcCC-CCCEEEEEeeeCCCCccHHHHHHH
Confidence 234445566666553 345688999999888777777765
No 326
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=6.5e-05 Score=79.92 Aligned_cols=152 Identities=16% Similarity=0.268 Sum_probs=82.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC--------CcceeeccCCCCccCChHHHHHHH
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEI 107 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~i 107 (624)
..|++||.+|+||||++-.|... +.-.+ .+....+.+.+.+.- ..|++.+..|-....++.++...+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~-~~~~~----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L 249 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAI-YGINS----DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHhhh----ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH
Confidence 46899999999999999999854 21000 000111122233321 334444444433334444444333
Q ss_pred HHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCC
Q 006958 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ 185 (624)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~ 185 (624)
.. .. ..++.||||||.... + ...+.++ ..++. .++.-+++|++++.
T Consensus 250 ~~----~~-------------------~~DlVLIDTaGr~~~-------~-~~~l~el-~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 250 TQ----SK-------------------DFDLVLVDTIGKSPK-------D-FMKLAEM-KELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred HH----hC-------------------CCCEEEEcCCCCCcc-------C-HHHHHHH-HHHHHhcCCCCeEEEEEcCCC
Confidence 22 11 268999999996531 1 1122333 22222 12322344667765
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006958 186 DIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 186 d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
. ..+..+.++.+.+. ..+=+|+||.|-...+..+.+++.
T Consensus 298 ~--~~~~~~~~~~~~~~-~~~~~I~TKlDet~~~G~~l~~~~ 336 (388)
T PRK12723 298 K--TSDVKEIFHQFSPF-SYKTVIFTKLDETTCVGNLISLIY 336 (388)
T ss_pred C--HHHHHHHHHHhcCC-CCCEEEEEeccCCCcchHHHHHHH
Confidence 4 33344455665443 356789999999888877777765
No 327
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=4.7e-05 Score=79.24 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHH---HHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMV---RSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~---~~yi-~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~Vl 210 (624)
..++.||||||....... ..+.+..+. ...+ ..++-.+| |++++. .++.+.-++.....-...-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~~~-----l~~eL~~~~~v~~~~~~~~p~~~~L-Vl~a~~---g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTN-----LMEELKKIKRVIKKADPDAPHEVLL-VLDATT---GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCCHH-----HHHHHHHHHHHHhhhcCCCCceEEE-EEECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence 368999999996543221 222333322 1222 24555555 556653 2333333444433335678999
Q ss_pred ccCcccCccccHHHHHh
Q 006958 211 TKLDLMDKGTNALEVLE 227 (624)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (624)
||.|....+..+.+++.
T Consensus 267 TKlD~t~~~G~~l~~~~ 283 (318)
T PRK10416 267 TKLDGTAKGGVVFAIAD 283 (318)
T ss_pred ECCCCCCCccHHHHHHH
Confidence 99998887776677654
No 328
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.98 E-value=3e-05 Score=68.34 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=77.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-+|.+.|--||||+|+|.-|.+.+. +. .|
T Consensus 18 irilllGldnAGKTT~LKqL~sED~--~h---lt---------------------------------------------- 46 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDP--RH---LT---------------------------------------------- 46 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCCh--hh---cc----------------------------------------------
Confidence 4899999999999999999999874 21 11
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~ 192 (624)
++.||+.+. +.+-+...|++||.-| ++.|+-...+|.++.|.+|.++.++...... ++.
T Consensus 47 -pT~GFn~k~----v~~~g~f~LnvwDiGG-------------qr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el 108 (185)
T KOG0074|consen 47 -PTNGFNTKK----VEYDGTFHLNVWDIGG-------------QRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEEL 108 (185)
T ss_pred -ccCCcceEE----EeecCcEEEEEEecCC-------------ccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHH
Confidence 123344322 3344557899999998 4556888999999999888766543322211 122
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+..-...|+++-.||-|++..
T Consensus 109 ~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 109 VELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHhhhhhhhccceeehhhhhHHHhh
Confidence 23444444456788888899998754
No 329
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.3e-05 Score=80.52 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=46.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
.++.||||||...... ...+.+..+.. .+. .+.-.+| |++++.. ..+..+.++.+... ...=+|+||.
T Consensus 300 ~D~VLIDTaGr~~rd~-----~~l~eL~~~~~-~~~~~~~~e~~L-VLsAt~~--~~~~~~~~~~f~~~-~~~glIlTKL 369 (432)
T PRK12724 300 SELILIDTAGYSHRNL-----EQLERMQSFYS-CFGEKDSVENLL-VLSSTSS--YHHTLTVLKAYESL-NYRRILLTKL 369 (432)
T ss_pred CCEEEEeCCCCCccCH-----HHHHHHHHHHH-hhcCCCCCeEEE-EEeCCCC--HHHHHHHHHHhcCC-CCCEEEEEcc
Confidence 6899999999753221 11222233322 221 1223444 5566633 33445556655443 4567899999
Q ss_pred cccCccccHHHHHh
Q 006958 214 DLMDKGTNALEVLE 227 (624)
Q Consensus 214 D~~~~~~~~~~~l~ 227 (624)
|-......+.+++.
T Consensus 370 DEt~~~G~il~i~~ 383 (432)
T PRK12724 370 DEADFLGSFLELAD 383 (432)
T ss_pred cCCCCccHHHHHHH
Confidence 99888777777654
No 330
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=3.2e-05 Score=68.15 Aligned_cols=132 Identities=20% Similarity=0.268 Sum_probs=84.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
=-+|+.+|-..|||||+|-.|--.. .+|..|
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ip------------------------------------------ 47 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-------SVTTIP------------------------------------------ 47 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-------Cccccc------------------------------------------
Confidence 3589999999999999999886442 233333
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
+.||+-+.+.. ....+.++|+-| ++.++.+.++|.....++|+++.++..|. .+++..
T Consensus 48 ---TvGFnvetVty-----kN~kfNvwdvGG-------------qd~iRplWrhYy~gtqglIFV~Dsa~~dr-~eeAr~ 105 (180)
T KOG0071|consen 48 ---TVGFNVETVTY-----KNVKFNVWDVGG-------------QDKIRPLWRHYYTGTQGLIFVVDSADRDR-IEEARN 105 (180)
T ss_pred ---ccceeEEEEEe-----eeeEEeeeeccC-------------chhhhHHHHhhccCCceEEEEEeccchhh-HHHHHH
Confidence 12333333222 235688999999 66779999999999999999888776532 222222
Q ss_pred -HHHHhC---CCCCceEEEeccCcccCccc--cHHHHHhCcccccCCCee
Q 006958 195 -LAREVD---PTGERTFGVLTKLDLMDKGT--NALEVLEGRSYRLQHPWV 238 (624)
Q Consensus 195 -l~~~~d---~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~ 238 (624)
+-+-+. ....+.++..||-|+.+... ++.+.++-+. .-...|.
T Consensus 106 ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~-~r~~~W~ 154 (180)
T KOG0071|consen 106 ELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER-IRDRNWY 154 (180)
T ss_pred HHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc-ccCCccE
Confidence 222222 12456677789999987643 4556665433 2223455
No 331
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.95 E-value=8.8e-05 Score=68.43 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|.++|..++||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999865
No 332
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=7.3e-05 Score=80.93 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=79.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC--------CcceeeccCCCCccCChHHHHHHH
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEI 107 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~i 107 (624)
..|+++|.+|+||||++-.|.+.-. +...+ ... .+...+.. ..|+.....|-....+..++...+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g---~~V---~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l 294 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYA-LLYGK---KKV---ALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKAL 294 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH-HhcCC---CeE---EEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHH
Confidence 4799999999999999999987521 01101 111 22233221 123332222222222333333222
Q ss_pred HHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006958 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (624)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~ 187 (624)
.. . ...++.||||||...... .....+..++.. ...+..++| |++++.
T Consensus 295 ~~----~-------------------~~~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~-~~~~~~~~L-Vl~a~~-- 342 (424)
T PRK05703 295 EQ----L-------------------RDCDVILIDTAGRSQRDK-----RLIEELKALIEF-SGEPIDVYL-VLSATT-- 342 (424)
T ss_pred HH----h-------------------CCCCEEEEeCCCCCCCCH-----HHHHHHHHHHhc-cCCCCeEEE-EEECCC--
Confidence 21 1 126899999999753211 122333444331 113333344 556653
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006958 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 188 ~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
...+..++++.+...+ ..-+|+||+|.......+.+++.
T Consensus 343 ~~~~l~~~~~~f~~~~-~~~vI~TKlDet~~~G~i~~~~~ 381 (424)
T PRK05703 343 KYEDLKDIYKHFSRLP-LDGLIFTKLDETSSLGSILSLLI 381 (424)
T ss_pred CHHHHHHHHHHhCCCC-CCEEEEecccccccccHHHHHHH
Confidence 3344455666666544 34688999999877666666654
No 333
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.92 E-value=9.9e-05 Score=77.42 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=94.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCC---C-----CcceeeccCCCCccCChHHHHHH
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG---G-----TDYAEFLHAPRKKFTDFAAVRKE 106 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~---~-----~~~~~~~~~~~~~~~~~~~v~~~ 106 (624)
--.|++||+.|+||||.|-.|..+-++-.+ ... +-+.+++. + +.|+..+..|-....+..++.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~----~~k---VaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK----KKK---VAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc----Ccc---eEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHH
Confidence 456999999999999999999886320011 111 12223332 1 56788888888888888888777
Q ss_pred HHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCC-CEEEEEEecCCC
Q 006958 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP-SCIILAISPANQ 185 (624)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~-~~iiL~V~~a~~ 185 (624)
|....+ .+++||||.|-... ....+.+| ..|+... +.-+.+|.+++.
T Consensus 276 i~~l~~-----------------------~d~ILVDTaGrs~~--------D~~~i~el-~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 276 IEALRD-----------------------CDVILVDTAGRSQY--------DKEKIEEL-KELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred HHHhhc-----------------------CCEEEEeCCCCCcc--------CHHHHHHH-HHHHhccccceEEEEEecCc
Confidence 665322 47999999995432 13333443 4455433 334455777763
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006958 186 DIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (624)
Q Consensus 186 d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (624)
...+...+...+...+.. =+++||+|....-.+..+++.
T Consensus 324 --K~~dlkei~~~f~~~~i~-~~I~TKlDET~s~G~~~s~~~ 362 (407)
T COG1419 324 --KYEDLKEIIKQFSLFPID-GLIFTKLDETTSLGNLFSLMY 362 (407)
T ss_pred --chHHHHHHHHHhccCCcc-eeEEEcccccCchhHHHHHHH
Confidence 234555566666654433 367899998876666677665
No 334
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.92 E-value=9.7e-06 Score=75.13 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..++++|..|+|||||+|+|++..-
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999999853
No 335
>PRK13796 GTPase YqeH; Provisional
Probab=97.92 E-value=1.4e-05 Score=85.07 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
..++|||.+|+|||||+|+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 379999999999999999999754
No 336
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.91 E-value=2.4e-06 Score=74.23 Aligned_cols=97 Identities=14% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~-~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..|.+|||.| ++.+++.+..|.+++|+++|+..-+|. .+.+ +.|+.-+.++........++.||+
T Consensus 47 vklqiwdtag-------------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAG-------------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKC 113 (192)
T ss_pred EEEEEeeccc-------------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccc
Confidence 5689999999 888999999999999998887665553 3333 456666677766677888999999
Q ss_pred cccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhc
Q 006958 214 DLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADIN 249 (624)
Q Consensus 214 D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (624)
|+..... +-.++. ...+.+|...+..++-+.+
T Consensus 114 d~a~er~v~~ddg~kla----~~y~ipfmetsaktg~nvd 149 (192)
T KOG0083|consen 114 DLAHERAVKRDDGEKLA----EAYGIPFMETSAKTGFNVD 149 (192)
T ss_pred ccchhhccccchHHHHH----HHHCCCceeccccccccHh
Confidence 9975321 112222 2345677777776655443
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.90 E-value=4.7e-05 Score=70.86 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..+++++|.+|+||||++|++.+...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46789999999999999999998653
No 338
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.89 E-value=1.7e-05 Score=84.23 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 339
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=6.9e-05 Score=80.16 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++-.++||-.--.|||||..+|+... | |.-+ +.+.+.+.|--++. ++
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~------------------~~~q~q~LDkl~vE------RE- 105 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDN------------------NIGQEQVLDKLQVE------RE- 105 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCC------------------CCchhhhhhhhhhh------hh-
Confidence 45578999999999999999998653 2 1111 00111111211111 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.| ..+....-.+........-|.+|||||-.+.... |.+.+.-++.++|+| +|+.+...|...
T Consensus 106 -RG--ITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E-------------VsRslaac~G~lLvV-DA~qGvqAQT~a 168 (650)
T KOG0462|consen 106 -RG--ITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE-------------VSRSLAACDGALLVV-DASQGVQAQTVA 168 (650)
T ss_pred -cC--cEEEeeeeEEEEEcCCceEEEeecCCCcccccce-------------ehehhhhcCceEEEE-EcCcCchHHHHH
Confidence 12 2222333333333323357899999997765433 455566688887754 677777777655
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.+...+ ..+..+|.|+||+|+....
T Consensus 169 nf~lAf-e~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 169 NFYLAF-EAGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred HHHHHH-HcCCeEEEeeeccCCCCCC
Confidence 443333 3478999999999997543
No 340
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.86 E-value=0.00022 Score=77.10 Aligned_cols=80 Identities=24% Similarity=0.268 Sum_probs=48.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~-~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
.++.||||||..... ...+.++.. ..+..+|.++| |+++... +++...++.+...-..+-+|+||+|
T Consensus 176 ~DvVIIDTAGr~~~d--------~~lm~El~~l~~~~~pdevlL-Vvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHALE--------EDLIEEMKEIKEAVKPDEVLL-VIDATIG---QQAKNQAKAFHEAVGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccch--------HHHHHHHHHHHHHhcccceeE-EEecccc---HHHHHHHHHHHhcCCCCEEEEeccc
Confidence 379999999965421 223333221 12335676665 5555543 5666667766543334667899999
Q ss_pred ccCccccHHHHHh
Q 006958 215 LMDKGTNALEVLE 227 (624)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (624)
....+..+..+..
T Consensus 244 ~~a~~G~~ls~~~ 256 (437)
T PRK00771 244 GTAKGGGALSAVA 256 (437)
T ss_pred CCCcccHHHHHHH
Confidence 9888776666654
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.81 E-value=0.0013 Score=66.10 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
+-+.|.+-|.||||||||+++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 5679999999999999999999753
No 342
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.81 E-value=1.5e-05 Score=84.73 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=24.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
+.-.|.+||-||+||||+||+|+|.+.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCce
Confidence 356899999999999999999999986
No 343
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.79 E-value=2.7e-05 Score=77.68 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=22.5
Q ss_pred EECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeC
Q 006958 40 VVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (624)
Q Consensus 40 vvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~ 80 (624)
|+|.+||||||+..++... ++. -.|.+..+.|-..
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~----~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LES----NGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTT----T-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHH--HHh----ccCCceEEEcchH
Confidence 7999999999999999874 222 2366666665443
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.77 E-value=0.00017 Score=68.26 Aligned_cols=78 Identities=28% Similarity=0.470 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhC-CCCCceEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD-PTGERTFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d-~~~~rti~VltK~D 214 (624)
.++.|+||||..... .+....+..+. . ...++.+++++. +.. ..+..+.+..+. ..+ ..-+|+||+|
T Consensus 83 ~d~viiDt~g~~~~~-----~~~l~~l~~l~-~-~~~~~~~~lVv~-~~~---~~~~~~~~~~~~~~~~-~~~viltk~D 150 (173)
T cd03115 83 FDVVIVDTAGRLQID-----ENLMEELKKIK-R-VVKPDEVLLVVD-AMT---GQDAVNQAKAFNEALG-ITGVILTKLD 150 (173)
T ss_pred CCEEEEECcccchhh-----HHHHHHHHHHH-h-hcCCCeEEEEEE-CCC---ChHHHHHHHHHHhhCC-CCEEEEECCc
Confidence 678999999965321 11222232221 1 234776666554 443 233334444442 223 4778899999
Q ss_pred ccCccccHHHH
Q 006958 215 LMDKGTNALEV 225 (624)
Q Consensus 215 ~~~~~~~~~~~ 225 (624)
.........++
T Consensus 151 ~~~~~g~~~~~ 161 (173)
T cd03115 151 GDARGGAALSI 161 (173)
T ss_pred CCCCcchhhhh
Confidence 98877655554
No 345
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.76 E-value=0.00018 Score=73.22 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHH---HHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMV---RSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~---~~yi-~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~Vlt 211 (624)
.++.||||||..... ....+.+..+. ...+ ..+|.++| |++++. ..+.+..+......-...-+|+|
T Consensus 155 ~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~L-Vl~a~~---~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLL-VLDATT---GQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred CCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEE-EEECCC---CHHHHHHHHHHHhhCCCCEEEEE
Confidence 689999999965421 11222233322 1111 13666666 555553 23333334443322245778999
Q ss_pred cCcccCccccHHHHHh
Q 006958 212 KLDLMDKGTNALEVLE 227 (624)
Q Consensus 212 K~D~~~~~~~~~~~l~ 227 (624)
|+|.......+.++..
T Consensus 226 KlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 226 KLDGTAKGGIILSIAY 241 (272)
T ss_pred ccCCCCCccHHHHHHH
Confidence 9999888776666654
No 346
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00016 Score=79.47 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
+..|-++|+|.--+|||-||..|-|.++--- +++.....-+..|.+...++..-.....
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqeg---------------------eaggitqqIgAt~fp~~ni~e~tk~~~~ 531 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEG---------------------EAGGITQQIGATYFPAENIREKTKELKK 531 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccc---------------------cccceeeeccccccchHHHHHHHHHHHh
Confidence 5889999999999999999999999775111 1222222233444444444432221111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH-
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD- 191 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~- 191 (624)
.+ -.....|.+.+||||| .+.+.++-.+...-+|.+||+| +.-.++..+.
T Consensus 532 --~~-------------K~~~kvPg~lvIdtpg-------------hEsFtnlRsrgsslC~~aIlvv-dImhGlepqti 582 (1064)
T KOG1144|consen 532 --DA-------------KKRLKVPGLLVIDTPG-------------HESFTNLRSRGSSLCDLAILVV-DIMHGLEPQTI 582 (1064)
T ss_pred --hh-------------hhhcCCCeeEEecCCC-------------chhhhhhhhccccccceEEEEe-ehhccCCcchh
Confidence 01 0012457899999999 4556777777778899878755 5555555554
Q ss_pred -HHHHHHHhCCCCCceEEEeccCccc
Q 006958 192 -AIKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 192 -~~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
.+.++| ....|.|+.|||+|.+
T Consensus 583 ESi~lLR---~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 583 ESINLLR---MRKTPFIVALNKIDRL 605 (1064)
T ss_pred HHHHHHH---hcCCCeEEeehhhhhh
Confidence 444444 4578999999999986
No 347
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.72 E-value=7.2e-05 Score=75.69 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-..+++|..|+|||||+|+|.+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 37899999999999999999985
No 348
>PRK00098 GTPase RsgA; Reviewed
Probab=97.70 E-value=0.00016 Score=74.81 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
-.++++|.+|+|||||+|+|+|..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999975
No 349
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.70 E-value=8.2e-05 Score=78.07 Aligned_cols=132 Identities=16% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++-.|++|-.--.|||||+..|+..+=--+..+-+ .+...|..++.+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v-------------------------~ERvMDSnDlEk-------- 50 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV-------------------------AERVMDSNDLEK-------- 50 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccch-------------------------hhhhcCccchhh--------
Confidence 57789999999999999999999765200000000 011122222211
Q ss_pred hhCCCCCcc--cccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQIS--NIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s--~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
.+|++ .+.-. |.. +...+.+|||||-.+.... |.+-+.-.|+++|+|. |..+.-.|.
T Consensus 51 ----ERGITILaKnTa--v~~-~~~~INIvDTPGHADFGGE-------------VERvl~MVDgvlLlVD-A~EGpMPQT 109 (603)
T COG1217 51 ----ERGITILAKNTA--VNY-NGTRINIVDTPGHADFGGE-------------VERVLSMVDGVLLLVD-ASEGPMPQT 109 (603)
T ss_pred ----hcCcEEEeccce--eec-CCeEEEEecCCCcCCccch-------------hhhhhhhcceEEEEEE-cccCCCCch
Confidence 11222 11111 222 3378999999996554332 3444455788877665 444444444
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (624)
-+ ..+..-..|.+-|+|+||+|..+...
T Consensus 110 rF-VlkKAl~~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 110 RF-VLKKALALGLKPIVVINKIDRPDARP 137 (603)
T ss_pred hh-hHHHHHHcCCCcEEEEeCCCCCCCCH
Confidence 43 34444456889999999999987654
No 350
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.69 E-value=8.8e-05 Score=76.37 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5799999999999999999999864
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=97.69 E-value=0.00025 Score=76.53 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=47.7
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.++.||||||..... +.....+..+ ...+ .++-++| |+++.. .+++...++.+...-..+-+|+||+|.
T Consensus 184 ~DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~v-~p~evll-Vlda~~---gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHID-----EELMDELKAI-KAAV-NPDEILL-VVDAMT---GQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccC-----HHHHHHHHHH-HHhh-CCCeEEE-EEeccc---HHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 689999999965321 1122222222 2223 5665655 555542 466766777665433456788999998
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
...+..+..+..
T Consensus 253 ~~rgG~alsi~~ 264 (433)
T PRK10867 253 DARGGAALSIRA 264 (433)
T ss_pred cccccHHHHHHH
Confidence 776665555543
No 352
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.68 E-value=0.00013 Score=71.29 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|.|+++|..|||||||+++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999865
No 353
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=9.5e-05 Score=65.54 Aligned_cols=109 Identities=20% Similarity=0.292 Sum_probs=66.3
Q ss_pred CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc---cccHHHHHHHHHhCCCCCceEEEe
Q 006958 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---IATSDAIKLAREVDPTGERTFGVL 210 (624)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d---~~~~~~~~l~~~~d~~~~rti~Vl 210 (624)
....+.++|+-|=. .++-..+-|.++.+++|.+|.+++.| .+..+...++++-.-.+...+++.
T Consensus 60 KNLk~~vwdLggqt-------------SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQT-------------SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCcc-------------cccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 34678999999833 34667889999999999999888764 233333445554334456788889
Q ss_pred ccCcccCccc--cHHHHHhCcccccCCCeeEEEeCCh---hhhccCCcHHHH
Q 006958 211 TKLDLMDKGT--NALEVLEGRSYRLQHPWVGIVNRSQ---ADINKNVDMIAA 257 (624)
Q Consensus 211 tK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~ 257 (624)
||.|.....+ ++...+. ...++.....++..|+ .+++...+++..
T Consensus 127 nKqD~~~~~t~~E~~~~L~--l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~ 176 (182)
T KOG0072|consen 127 NKQDYSGALTRSEVLKMLG--LQKLKDRIWQIVKTSAVKGEGLDPAMDWLQR 176 (182)
T ss_pred ccccchhhhhHHHHHHHhC--hHHHhhheeEEEeeccccccCCcHHHHHHHH
Confidence 9999865433 3333333 2233333344444444 455444444443
No 354
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00013 Score=79.32 Aligned_cols=134 Identities=16% Similarity=0.268 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..-.|+++|.-.+|||+|+..|++... |.... +.+..|+-++.. .. +
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~-----~~e~~lrytD~l--------------------~~------E- 173 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSK-----NTEADLRYTDTL--------------------FY------E- 173 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecc-ccccc-----cccccccccccc--------------------hh------h-
Confidence 455799999999999999999999874 54422 222222222100 00 0
Q ss_pred hhCCCCCcccccEEEEEecCC--CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPN--VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
..++.++-..+..+-....+ ..-++++||||-.... +-+...++-+|.++|+|..+. +.....
T Consensus 174 -~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~-------------DE~ta~l~~sDgvVlvvDv~E-GVmlnt 238 (971)
T KOG0468|consen 174 -QERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS-------------DETTASLRLSDGVVLVVDVAE-GVMLNT 238 (971)
T ss_pred -HhcCceEeecceEEEEecCcCceeeeeeecCCCcccch-------------HHHHHHhhhcceEEEEEEccc-CceeeH
Confidence 11223344455555554432 3467999999965432 223345667898887665543 333322
Q ss_pred HHHHHHHhCCCCCceEEEeccCccc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
. ++++..-....++.+|+||+|.+
T Consensus 239 E-r~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 239 E-RIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred H-HHHHHHHhccCcEEEEEehhHHH
Confidence 2 25566666789999999999975
No 355
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.60 E-value=0.00035 Score=75.41 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=48.2
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.++.||||||..... +.....+..+. . .-.++.++|++ ++.. .+++...++.+...-..+=+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~d-----~~l~~eL~~i~-~-~~~p~e~lLVv-da~t---gq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQID-----EELMEELAAIK-E-ILNPDEILLVV-DAMT---GQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccC-----HHHHHHHHHHH-H-hhCCceEEEEE-eccc---hHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 689999999965321 11223333332 2 23566666644 5542 466777777665333456788999997
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
...+..+..+..
T Consensus 252 ~~~~G~~lsi~~ 263 (428)
T TIGR00959 252 DARGGAALSVRS 263 (428)
T ss_pred cccccHHHHHHH
Confidence 766665555543
No 356
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.00018 Score=75.75 Aligned_cols=135 Identities=19% Similarity=0.297 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..-...+|..--.|||||-.+|+... +..+.+ +.++.+-+.++-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~R------------------------------em~~Q~LDsMdi 51 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSER------------------------------EMRAQVLDSMDI 51 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcChH------------------------------HHHHHhhhhhhh
Confidence 34556778888899999999998754 222211 112222222222
Q ss_pred hhCCCCCcccccEEEEEecC--CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSP--NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
...++..+-...+.+..... ....|.||||||-.+.+-. |.+.+..+...+| |++|.++...+.
T Consensus 52 ERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalL-vVDAsQGveAQT 117 (603)
T COG0481 52 ERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALL-VVDASQGVEAQT 117 (603)
T ss_pred HhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEE-EEECccchHHHH
Confidence 12222333345566655443 4468899999997765543 3344555666666 456777777665
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
....=..++ .+.-+|-|+||+|+....
T Consensus 118 lAN~YlAle-~~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 118 LANVYLALE-NNLEIIPVLNKIDLPAAD 144 (603)
T ss_pred HHHHHHHHH-cCcEEEEeeecccCCCCC
Confidence 543222233 367899999999997654
No 357
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.59 E-value=0.00037 Score=75.95 Aligned_cols=81 Identities=22% Similarity=0.221 Sum_probs=44.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.++.+|||+|...... ...+.+. ++..... +.-.+| |++++.. ..+..+.++.+... ..+-+|+||+|.
T Consensus 335 ~d~VLIDTaGr~~~d~-----~~~e~~~-~l~~~~~-p~e~~L-VLdAt~~--~~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-----MVSEQIA-MLHGAGA-PVKRLL-LLNATSH--GDTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhhH-----HHHHHHH-HHhccCC-CCeeEE-EEeCCCc--HHHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 4789999999653211 0111111 1111111 232344 5566532 23444456666654 356778999999
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
......+.+++.
T Consensus 404 t~~~G~~l~i~~ 415 (484)
T PRK06995 404 AASLGGALDVVI 415 (484)
T ss_pred cccchHHHHHHH
Confidence 888777777765
No 358
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00029 Score=73.67 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=80.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC--CCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG--RDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g--~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
--+.+||-.|-||||||-|.|+= .-+ +..|.+..+ ++. ...-.||-++.+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaI--q~AG~Vk~r-------k~~------------~~a~SDWM~iEk------- 63 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGR-------KSG------------KHAKSDWMEIEK------- 63 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchh--hhcceeeec-------cCC------------cccccHHHHHHH-------
Confidence 45789999999999999999873 222 112222111 110 011123333321
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.+|+|-..-.++..+. ..-+.|+||||--+. .+-+.+.+.-+|+.++++.+| .++..+.
T Consensus 64 -----qRGISVtsSVMqF~Y~-~~~iNLLDTPGHeDF-------------SEDTYRtLtAvDsAvMVIDaA-KGiE~qT- 122 (528)
T COG4108 64 -----QRGISVTSSVMQFDYA-DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDAA-KGIEPQT- 122 (528)
T ss_pred -----hcCceEEeeEEEeccC-CeEEeccCCCCcccc-------------chhHHHHHHhhheeeEEEecc-cCccHHH-
Confidence 2344443344444443 356899999993322 233455666788877755544 4566554
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
++|.+-..-.+.|++-.+||+|.....
T Consensus 123 ~KLfeVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 123 LKLFEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred HHHHHHHhhcCCceEEEeeccccccCC
Confidence 446666677799999999999986553
No 359
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.0002 Score=70.37 Aligned_cols=133 Identities=20% Similarity=0.353 Sum_probs=79.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|..||..|-|||||++.|++.+| ++.+++..--.+.|+.. +-.+..
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~------------------------------TyelqE 90 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQAN------------------------------TYELQE 90 (406)
T ss_pred EEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecc------------------------------hhhhhh
Confidence 689999999999999999999887 11222221111111110 000111
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCC-ccHHHHHHHHHHHhhc---------------CCCEEEEEE
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYVE---------------KPSCIILAI 180 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~-~~~~~~i~~~~~~yi~---------------~~~~iiL~V 180 (624)
.-+ ...||+|||-|+.+.-.++.. +.+.+-+......|++ +.++.+.++
T Consensus 91 -------snv--------rlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI 155 (406)
T KOG3859|consen 91 -------SNV--------RLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFI 155 (406)
T ss_pred -------cCe--------eEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEe
Confidence 111 246999999999865544322 3355555555445542 345555667
Q ss_pred ecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 181 ~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.|....+-.-+.. -.+++|. ...+|-|+-|.|.+.+.
T Consensus 156 ~PTGH~LKslDLv-tmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 156 SPTGHSLKSLDLV-TMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred cCCCcchhHHHHH-HHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 7776666555544 4466665 57889999999988654
No 360
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.51 E-value=0.00064 Score=66.02 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.++|||||+++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999975
No 361
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00041 Score=72.95 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=60.1
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~r-ti~VltK~D 214 (624)
..++|||.||. .+.+.+|+. -+.-.|+.+| |++++..+..+... .+.-+|-.|.+ -++|+||+|
T Consensus 50 ~~~~fIDvpgh------------~~~i~~mia-g~~~~d~alL-vV~~deGl~~qtgE-hL~iLdllgi~~giivltk~D 114 (447)
T COG3276 50 GVMGFIDVPGH------------PDFISNLLA-GLGGIDYALL-VVAADEGLMAQTGE-HLLILDLLGIKNGIIVLTKAD 114 (447)
T ss_pred CceEEeeCCCc------------HHHHHHHHh-hhcCCceEEE-EEeCccCcchhhHH-HHHHHHhcCCCceEEEEeccc
Confidence 47999999993 445566644 3345676666 55776555444332 22234444554 499999999
Q ss_pred ccCccc---cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 215 LMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 215 ~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
..+... ...+++.... .-...++.++..++++++++...+..+.
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 997632 1223333222 1122345555556666665555444443
No 362
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.51 E-value=5.1e-05 Score=72.31 Aligned_cols=117 Identities=23% Similarity=0.281 Sum_probs=70.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.+||||+-.+|||++|-+.+-.. ||... .||+.-
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~-fp~~y-----vPTVFd--------------------------------------- 39 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNA-FPEEY-----VPTVFD--------------------------------------- 39 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCc-Ccccc-----cCeEEc---------------------------------------
Confidence 478999999999999999998775 46543 343331
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccc--cHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIA--TSDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~--~~~~ 192 (624)
.....+.+.......|.+|||.|=. +. +.++-+ ...++|.+++|..-.+. .+. .+.|
T Consensus 40 -------nys~~v~V~dg~~v~L~LwDTAGqe--------dY--DrlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~kW 99 (198)
T KOG0393|consen 40 -------NYSANVTVDDGKPVELGLWDTAGQE--------DY--DRLRPL---SYPQTDVFLLCFSVVSPESFENVKSKW 99 (198)
T ss_pred -------cceEEEEecCCCEEEEeeeecCCCc--------cc--cccccc---CCCCCCEEEEEEEcCChhhHHHHHhhh
Confidence 1111222321223568999999922 11 113322 34678877665432221 122 2445
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+.-++...| +.|+|+|.||.|+.+.
T Consensus 100 ~pEi~~~cp-~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 100 IPEIKHHCP-NVPIILVGTKADLRDD 124 (198)
T ss_pred hHHHHhhCC-CCCEEEEeehHHhhhC
Confidence 555555555 6999999999999843
No 363
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=97.47 E-value=0.15 Score=55.20 Aligned_cols=28 Identities=46% Similarity=0.698 Sum_probs=26.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
.+--.|+|+|+||+|||||||.|.|.+|
T Consensus 35 l~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 35 LSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred cceeEEEEecCcccchHHHHHHHhccCh
Confidence 5677899999999999999999999998
No 364
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00056 Score=69.89 Aligned_cols=144 Identities=28% Similarity=0.402 Sum_probs=78.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccc----cccccEEEEEEeCCCCCcceeeccCCCCccCChHHHH--HHHHHH
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI----VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVR--KEISDE 110 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~----~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~i~~~ 110 (624)
+++|+|.--+|||||+--|+... |--|.|- .=|.|-+++-.+|.. ............++.+.++.+ +||.+
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSs-is~evlGFd~~g~vVNY~~~~taEEi~e- 245 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSS-ISNEVLGFDNRGKVVNYAQNMTAEEIVE- 245 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccc-cchhcccccccccccchhhcccHHHHHh-
Confidence 89999999999999999988765 4444431 124444444222210 000000011112223333321 11111
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--ccc
Q 006958 111 TDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIA 188 (624)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~--d~~ 188 (624)
....-+||+|+.|-.+--. ..+..+ ..| -||+..|+ ++|+. .++
T Consensus 246 ----------------------~SSKlvTfiDLAGh~kY~~--------TTi~gL-tgY--~Ph~A~Lv-VsA~~Gi~~t 291 (591)
T KOG1143|consen 246 ----------------------KSSKLVTFIDLAGHAKYQK--------TTIHGL-TGY--TPHFACLV-VSADRGITWT 291 (591)
T ss_pred ----------------------hhcceEEEeecccchhhhe--------eeeeec-ccC--CCceEEEE-EEcCCCCccc
Confidence 1123479999999443110 001111 123 36766664 45555 466
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCccc
Q 006958 189 TSDAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 189 ~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (624)
+.+.+.++..+ ..|.++++||+|+.++.+
T Consensus 292 TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 292 TREHLGLIAAL---NIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred cHHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence 77777777766 479999999999998853
No 365
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0015 Score=65.09 Aligned_cols=130 Identities=20% Similarity=0.351 Sum_probs=78.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|..+|.-..|||||.-||++. ..-.+. ..+.+++++.+.=+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~-la~~~~-----------------------------~~~~~y~~id~aPe------- 55 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTV-LAKKGG-----------------------------AEAKAYDQIDNAPE------- 55 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHH-HHhhcc-----------------------------ccccchhhhccCch-------
Confidence 36899999999999999999975 211110 11122222221100
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc-cHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA-TSDAIK 194 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~-~~~~~~ 194 (624)
.+..|++-++-.++....+ .++..||.||- .+-+++|+.... +.|..||+|.++..... +.+..-
T Consensus 56 Ek~rGITIntahveyet~~-rhyahVDcPGH------------aDYvKNMItgAa-qmDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 56 EKARGITINTAHVEYETAN-RHYAHVDCPGH------------ADYVKNMITGAA-QMDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred HhhcCceeccceeEEecCC-ceEEeccCCCh------------HHHHHHHhhhHH-hcCccEEEEEcCCCCCCcchhhhh
Confidence 1123444444555544443 68999999992 455677766554 46667887765544332 234444
Q ss_pred HHHHhCCCCC-ceEEEeccCcccCcc
Q 006958 195 LAREVDPTGE-RTFGVLTKLDLMDKG 219 (624)
Q Consensus 195 l~~~~d~~~~-rti~VltK~D~~~~~ 219 (624)
+++++ |. ++++++||+|+++..
T Consensus 122 larqv---Gvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 122 LARQV---GVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhc---CCcEEEEEEecccccCcH
Confidence 77776 45 577789999999853
No 366
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00046 Score=69.47 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=28.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEe
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQ 79 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~ 79 (624)
.|.+||.--.|||||..||+|.-.. ...--.++-+.++|..
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT~--~hseElkRgitIkLGY 52 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWTD--RHSEELKRGITIKLGY 52 (415)
T ss_pred Eeeeeeecccchhhheehhhceeee--chhHHHhcCcEEEecc
Confidence 6889999999999999999997421 1122334555555533
No 367
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0018 Score=59.05 Aligned_cols=128 Identities=16% Similarity=0.265 Sum_probs=80.5
Q ss_pred HHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCC
Q 006958 14 IQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP 93 (624)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~ 93 (624)
..+++..+|-- -+--.+++.|--|||||||++.|=..+. +.-.+|--| |
T Consensus 7 F~~VLq~LgL~--------kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHP-------T------------- 55 (193)
T KOG0077|consen 7 FSSVLQFLGLY--------KKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHP-------T------------- 55 (193)
T ss_pred HHHHHHHHHHh--------ccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCC-------C-------------
Confidence 34566666632 2567899999999999999999976543 112333333 2
Q ss_pred CCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCC
Q 006958 94 RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP 173 (624)
Q Consensus 94 ~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~ 173 (624)
.+.+. | +....|-+|+-| ..+.+...+.|+..+
T Consensus 56 -----------------SE~l~--------------I---g~m~ftt~DLGG-------------H~qArr~wkdyf~~v 88 (193)
T KOG0077|consen 56 -----------------SEELS--------------I---GGMTFTTFDLGG-------------HLQARRVWKDYFPQV 88 (193)
T ss_pred -----------------hHHhe--------------e---cCceEEEEcccc-------------HHHHHHHHHHHHhhh
Confidence 01110 1 125688999999 455588889999999
Q ss_pred CEEEEEEecCCCcccc--HHHHH-HHHHhCCCCCceEEEeccCcccCcc
Q 006958 174 SCIILAISPANQDIAT--SDAIK-LAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 174 ~~iiL~V~~a~~d~~~--~~~~~-l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
|+|+..|+.+....-. ...++ +.....-...|.++..||+|.....
T Consensus 89 ~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 89 DAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 9988877666542211 11111 1111112368999999999987654
No 368
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0014 Score=71.12 Aligned_cols=114 Identities=17% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--------cH
Q 006958 119 KQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--------TS 190 (624)
Q Consensus 119 ~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~--------~~ 190 (624)
.||+-+.-...+. ++...+||+|.||.-. .+.+|+. -+..+|..||||+.....++ +.
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhkd------------Fi~nmi~-g~sqaD~avLvvd~s~~~FE~gfd~~gQtr 304 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHKD------------FIPNMIS-GASQADVAVLVVDASTGEFESGFDPGGQTR 304 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCccc------------cchhhhc-cccccceEEEEEECCcchhhhccCCCCchH
Confidence 4566555444444 5557899999999322 1233332 23468888886644332111 22
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCc---------cc-ccCCCeeEEEeCChhhh
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGR---------SY-RLQHPWVGIVNRSQADI 248 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~---------~~-~l~~g~~~v~~~s~~~~ 248 (624)
+...+++.+. -...|+++||+|+++=..+-.+.+.+. .+ .....|+++...+++++
T Consensus 305 Eha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 305 EHALLLRSLG--ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred HHHHHHHHcC--cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 3344566554 356788999999997544322222211 11 12236777776666654
No 369
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.0038 Score=60.63 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=53.3
Q ss_pred CcEEEeC-CCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH-HHHHHHHhCCCCCceEEEeccCc
Q 006958 137 NLTLIDL-PGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-AIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 137 ~ltlvDt-PGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~-~~~l~~~~d~~~~rti~VltK~D 214 (624)
++.+||| .|+ +.+-+.-++..|.+|.+|.|....+.+++ ..+++.+++ -+|+.+|+||+|
T Consensus 135 e~VivDtEAGi----------------EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv~ 196 (255)
T COG3640 135 EVVIVDTEAGI----------------EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKVD 196 (255)
T ss_pred cEEEEecccch----------------hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeecc
Confidence 6778887 453 34445567789987776666654444433 334555553 289999999999
Q ss_pred ccCccccHHHHHhCcccccCCCeeEEEeCChh
Q 006958 215 LMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA 246 (624)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~ 246 (624)
.. . ..+......+++.+.++++.+.+
T Consensus 197 e~--e----~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 197 EE--E----ELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred ch--h----HHHHhhhhccCCeEEEEccCCHH
Confidence 65 1 22222234556667888887653
No 370
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.23 E-value=0.00042 Score=69.73 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.=+.+.|||-||+|||||+|++-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 35799999999999999999987654
No 371
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0046 Score=65.35 Aligned_cols=78 Identities=23% Similarity=0.269 Sum_probs=52.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~-~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
.++.||||.|-... ..+.+.++.. .-+-+||-++||+++.. -+++...|+.++..-.=|=+|+||+|
T Consensus 183 ~DvvIvDTAGRl~i--------de~Lm~El~~Ik~~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLHI--------DEELMDELKEIKEVINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCcccc--------cHHHHHHHHHHHhhcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEccc
Confidence 68999999995542 1344444432 23346776666554433 57888888888776556778899999
Q ss_pred ccCccccHHHH
Q 006958 215 LMDKGTNALEV 225 (624)
Q Consensus 215 ~~~~~~~~~~~ 225 (624)
-..++..++.+
T Consensus 251 GdaRGGaALS~ 261 (451)
T COG0541 251 GDARGGAALSA 261 (451)
T ss_pred CCCcchHHHhh
Confidence 88887655444
No 372
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.22 E-value=0.003 Score=77.23 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHhccCCC-CCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCccccc
Q 006958 6 SLIGLINKIQRACTVLGDHGG-EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (624)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~ 64 (624)
++-.+-.++.+....+..... .-..+ ..||=.+|+|+++|||||+|+.- |..| |-.
T Consensus 82 ~~~~l~~~~~~a~~~Lk~~~~~~~~~l-Y~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 82 EIRELRARFNEALALLKRSRLGGRRYL-YDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhh-hcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 445566677777666653210 00012 48999999999999999999988 8774 654
No 373
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0023 Score=68.58 Aligned_cols=112 Identities=28% Similarity=0.465 Sum_probs=68.0
Q ss_pred CCCeEE-EECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVA-VVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~Iv-vvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
..|.|+ |||++|.|||||+.+|+.+ | .--| .+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr-~-----tk~t-----------------------------------------i~ 99 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRR-F-----TKQT-----------------------------------------ID 99 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHH-H-----HHhh-----------------------------------------hh
Confidence 466766 9999999999999999975 3 0000 11
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.+.| ||. +.+.....+||...|. . + ..|+ ...+-+|. +|+.+++|-++..+..
T Consensus 100 ~i~G--------PiT--vvsgK~RRiTflEcp~--D---------l----~~mi-DvaKIaDL-VlLlIdgnfGfEMETm 152 (1077)
T COG5192 100 EIRG--------PIT--VVSGKTRRITFLECPS--D---------L----HQMI-DVAKIADL-VLLLIDGNFGFEMETM 152 (1077)
T ss_pred ccCC--------ceE--EeecceeEEEEEeChH--H---------H----HHHH-hHHHhhhe-eEEEeccccCceehHH
Confidence 2223 111 2233446789998884 1 1 1121 12234775 4556788877666544
Q ss_pred HHHHHHhCCCC-CceEEEeccCcccCccc
Q 006958 193 IKLAREVDPTG-ERTFGVLTKLDLMDKGT 220 (624)
Q Consensus 193 ~~l~~~~d~~~-~rti~VltK~D~~~~~~ 220 (624)
. ++.-+.+.| -|++||+|..|+....+
T Consensus 153 E-FLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 153 E-FLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred H-HHHHHhhcCCCceEEEEeecccccChH
Confidence 3 444444555 46889999999987654
No 374
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.12 E-value=0.00077 Score=65.84 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=24.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
-++-+||-||+||||++..|+|.. -|+.++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasy 89 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAY 89 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-Cccccc
Confidence 367889999999999999999984 354443
No 375
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0044 Score=63.45 Aligned_cols=149 Identities=18% Similarity=0.242 Sum_probs=81.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc-ccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
.+-+.+-+|.---|||||+-+|+-..- ++.+. +.+ +.+. .-.+...-...||.-+-+-++.+++
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQ-la~-------l~~d-------S~~~~t~g~~~D~ALLvDGL~AERE 69 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQ-LAS-------LERD-------SKRKGTQGEKIDLALLVDGLEAERE 69 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHH-HHH-------Hhcc-------cccccCCCCccchhhhhhhhHHHHh
Confidence 567899999999999999999986431 00000 000 0000 0001111233466666666665543
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.| ++-+.-. ..++.....+.+.||||- ++-.++|+... .-+|..|++| +|...+..+.-
T Consensus 70 --QG----ITIDVAY-RyFsT~KRkFIiADTPGH------------eQYTRNMaTGA-STadlAIlLV-DAR~Gvl~QTr 128 (431)
T COG2895 70 --QG----ITIDVAY-RYFSTEKRKFIIADTPGH------------EQYTRNMATGA-STADLAILLV-DARKGVLEQTR 128 (431)
T ss_pred --cC----ceEEEEe-eecccccceEEEecCCcH------------HHHhhhhhccc-ccccEEEEEE-ecchhhHHHhH
Confidence 23 3222222 233445578999999992 33345565432 4577767655 55555444432
Q ss_pred --HHHHHHhCCCCCc-eEEEeccCcccCcccc
Q 006958 193 --IKLAREVDPTGER-TFGVLTKLDLMDKGTN 221 (624)
Q Consensus 193 --~~l~~~~d~~~~r-ti~VltK~D~~~~~~~ 221 (624)
.-++.- .|.| .++.+||+|+++-..+
T Consensus 129 RHs~I~sL---LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 129 RHSFIASL---LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred HHHHHHHH---hCCcEEEEEEeeecccccCHH
Confidence 113332 3566 5566999999987654
No 376
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.96 E-value=1.2 Score=51.88 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=19.8
Q ss_pred ECCCCCCHHHHHHHhhCCCcccc
Q 006958 41 VGGQSSGKSSVLESVVGRDFLPR 63 (624)
Q Consensus 41 vG~~ssGKSSllnal~g~~~lP~ 63 (624)
+|.||+|||||||.|+|..| ++
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~ 22 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DV 22 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cc
Confidence 59999999999999999986 44
No 377
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.93 E-value=0.0059 Score=62.22 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
....|.|+|.+||||||||+.+.+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999985
No 378
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.89 E-value=0.0009 Score=69.38 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=25.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~ 64 (624)
..-++.|||-||+|||||+|+|.....-|+|
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg 281 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVG 281 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCC
Confidence 3458999999999999999999988764444
No 379
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.71 E-value=0.017 Score=56.68 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCC-CccccH-HHHHHHHHhCCCCCceEEEeccCc
Q 006958 159 VEDIENMVRSYVEKPSCIILAISPAN-QDIATS-DAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 159 ~~~i~~~~~~yi~~~~~iiL~V~~a~-~d~~~~-~~~~l~~~~d~~~~rti~VltK~D 214 (624)
+++=-.+++..+.+|. |||+=-|.. -|..+. ..+.+++++......|++++|+=.
T Consensus 147 qqQRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 147 QQQRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 5555667788888898 566544433 254444 345677777666678999999843
No 380
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0023 Score=71.13 Aligned_cols=129 Identities=24% Similarity=0.265 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..-.|++|..--.|||||..+|+..+- -+..|.+-.+++- |.-+ +| .+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfl--------------------d~re--de---q~rg 57 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFL--------------------DTRE--DE---QTRG 57 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeec--------------------cccc--hh---hhhc
Confidence 567899999999999999999987652 2344444444421 1110 00 0111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
++=+..++| + -....-+.|||+||-.+.. ..+.+...-+|.. |+.+++..+...+...
T Consensus 58 itmkss~is-----~---~~~~~~~nlidspghvdf~-------------sevssas~l~d~a-lvlvdvvegv~~qt~~ 115 (887)
T KOG0467|consen 58 ITMKSSAIS-----L---LHKDYLINLIDSPGHVDFS-------------SEVSSASRLSDGA-LVLVDVVEGVCSQTYA 115 (887)
T ss_pred eeeeccccc-----c---ccCceEEEEecCCCccchh-------------hhhhhhhhhcCCc-EEEEeeccccchhHHH
Confidence 111112222 1 1133568999999976543 3355555557743 4456777777777654
Q ss_pred HHHHHhCCCCCceEEEeccCcc
Q 006958 194 KLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~ 215 (624)
++|+.=-.|.+.|+|+||+|.
T Consensus 116 -vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 116 -VLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred -HHHHHHHccCceEEEEehhhh
Confidence 778766678999999999994
No 381
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.029 Score=57.23 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=40.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcC---CCEEEEEEecCCCccccHHHHH--HHHHhCCCCCceEEEe
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK---PSCIILAISPANQDIATSDAIK--LAREVDPTGERTFGVL 210 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~---~~~iiL~V~~a~~d~~~~~~~~--l~~~~d~~~~rti~Vl 210 (624)
.++++||.||- ..+++.-|.. -|..+ +|+++..+..++.+.. +...+ ....++|+
T Consensus 70 lq~tlvDCPGH----------------asLIRtiiggaqiiDlm~-lviDv~kG~QtQtAEcLiig~~~---c~klvvvi 129 (522)
T KOG0461|consen 70 LQFTLVDCPGH----------------ASLIRTIIGGAQIIDLMI-LVIDVQKGKQTQTAECLIIGELL---CKKLVVVI 129 (522)
T ss_pred ceeEEEeCCCc----------------HHHHHHHHhhhheeeeee-EEEehhcccccccchhhhhhhhh---ccceEEEE
Confidence 47799999992 2334444433 34334 4667776666665533 33333 35678999
Q ss_pred ccCcccCccc
Q 006958 211 TKLDLMDKGT 220 (624)
Q Consensus 211 tK~D~~~~~~ 220 (624)
||+|..+++.
T Consensus 130 nkid~lpE~q 139 (522)
T KOG0461|consen 130 NKIDVLPENQ 139 (522)
T ss_pred eccccccchh
Confidence 9999987743
No 382
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.0096 Score=61.68 Aligned_cols=76 Identities=29% Similarity=0.301 Sum_probs=45.2
Q ss_pred CCCCcEEEeCCCCccccCCCCCccHHHHHHHHH--HHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 006958 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMV--RSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (624)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~--~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~Vlt 211 (624)
+..++.||||.|-.+. . ...+++|. .+++ +||-+|+ |.+++.. +.+...++.+...-.-+=++||
T Consensus 182 e~fdvIIvDTSGRh~q-----e---~sLfeEM~~v~~ai-~Pd~vi~-VmDasiG---Qaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQ-----E---ASLFEEMKQVSKAI-KPDEIIF-VMDASIG---QAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred cCCcEEEEeCCCchhh-----h---HHHHHHHHHHHhhc-CCCeEEE-EEecccc---HhHHHHHHHHHHhhccceEEEE
Confidence 3468999999995542 2 33444442 2344 4776665 5566643 3334445555444344568899
Q ss_pred cCcccCccccH
Q 006958 212 KLDLMDKGTNA 222 (624)
Q Consensus 212 K~D~~~~~~~~ 222 (624)
|+|--.++.-+
T Consensus 249 KlDGhakGGgA 259 (483)
T KOG0780|consen 249 KLDGHAKGGGA 259 (483)
T ss_pred ecccCCCCCce
Confidence 99987766543
No 383
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.45 E-value=0.051 Score=55.88 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=32.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTE 81 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~ 81 (624)
..|+++|||+.++|||||...|....+ --.|+|+-+.|..++
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~LDvgQ 143 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVELDVGQ 143 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEcCCCC
Confidence 689999999999999999999987532 125777766654443
No 384
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.32 E-value=0.0043 Score=55.93 Aligned_cols=114 Identities=19% Similarity=0.278 Sum_probs=67.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-+|.++|+...||+|++-..+|..+ . ++.....
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~-----d------------------------------------------e~~~q~~ 53 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEY-----D------------------------------------------EEYTQTL 53 (205)
T ss_pred EEEEeecccccCceeeehhhhcchh-----H------------------------------------------HHHHHHh
Confidence 3899999999999999999988764 0 0011112
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~ 192 (624)
+..|-++.+.+. +. ...+++||+-| ++...+|+--...++-+ ||+..+-+..... .+|
T Consensus 54 --GvN~mdkt~~i~--~t-~IsfSIwdlgG-------------~~~~~n~lPiac~dsva-IlFmFDLt~r~TLnSi~~W 114 (205)
T KOG1673|consen 54 --GVNFMDKTVSIR--GT-DISFSIWDLGG-------------QREFINMLPIACKDSVA-ILFMFDLTRRSTLNSIKEW 114 (205)
T ss_pred --CccceeeEEEec--ce-EEEEEEEecCC-------------cHhhhccCceeecCcEE-EEEEEecCchHHHHHHHHH
Confidence 233444444432 22 24578999999 33445554444455554 4555554433222 345
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
.+-|+.......| |.|.||.|..
T Consensus 115 Y~QAr~~NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 115 YRQARGLNKTAIP-ILVGTKYDLF 137 (205)
T ss_pred HHHHhccCCccce-EEeccchHhh
Confidence 5555555444333 7889999974
No 385
>PRK01889 GTPase RsgA; Reviewed
Probab=96.31 E-value=0.0057 Score=64.95 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|.+|+|||||+|+|+|..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 79999999999999999999975
No 386
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.22 E-value=0.0005 Score=63.76 Aligned_cols=166 Identities=21% Similarity=0.306 Sum_probs=93.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-|-.+.|+|+-++||+|++...+...| .- ..+..|.-.
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nf-----s~----------------------------------~yRAtIgvd--- 61 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNF-----SY----------------------------------HYRATIGVD--- 61 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHH-----HH----------------------------------HHHHHHhHH---
Confidence 567899999999999999999987765 10 011111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
...-.++........+.|||..| ++++.+|.+-|.+.+..-++ |.+.+....-+...
T Consensus 62 ---------falkVl~wdd~t~vRlqLwdIag-------------Qerfg~mtrVyykea~~~~i-Vfdvt~s~tfe~~s 118 (229)
T KOG4423|consen 62 ---------FALKVLQWDDKTIVRLQLWDIAG-------------QERFGNMTRVYYKEAHGAFI-VFDVTRSLTFEPVS 118 (229)
T ss_pred ---------HHHHHhccChHHHHHHHHhcchh-------------hhhhcceEEEEecCCcceEE-EEEccccccccHHH
Confidence 00001112223335788999999 66778898889999885444 33444333333333
Q ss_pred HHHHHhC-----CCCC--ceEEEeccCcccCccc-cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHHHhHh
Q 006958 194 KLAREVD-----PTGE--RTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265 (624)
Q Consensus 194 ~l~~~~d-----~~~~--rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f 265 (624)
.+...+| |.|. +++...||||.-.... +......+ +...+||.+....|+++ +..+....+...|...-
T Consensus 119 kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~--f~kengf~gwtets~Ke-nkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 119 KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDN--FKKENGFEGWTETSAKE-NKNIPEAQRELVEKILV 195 (229)
T ss_pred HHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHH--HHhccCccceeeecccc-ccChhHHHHHHHHHHHh
Confidence 3444444 4454 5677789999865432 11222221 23345555555555544 34445555556666555
Q ss_pred cc
Q 006958 266 ET 267 (624)
Q Consensus 266 ~~ 267 (624)
.+
T Consensus 196 nd 197 (229)
T KOG4423|consen 196 ND 197 (229)
T ss_pred hc
Confidence 54
No 387
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.11 E-value=0.019 Score=58.91 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=48.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHH---HHHHHHHhhc-CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVED---IENMVRSYVE-KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~---i~~~~~~yi~-~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~Vlt 211 (624)
.++.|+||.|--.+..+ +.+. |.+.+..... .|+- +|+|.++.. -++++.-++.+...-.=+=+|+|
T Consensus 222 ~DvvliDTAGRLhnk~n-----LM~EL~KI~rV~~k~~~~ap~e-~llvlDAtt---Gqnal~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 222 IDVVLIDTAGRLHNKKN-----LMDELKKIVRVIKKDDPDAPHE-ILLVLDATT---GQNALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred CCEEEEeCcccccCchh-----HHHHHHHHHHHhccccCCCCce-EEEEEEccc---ChhHHHHHHHHHHhcCCceEEEE
Confidence 68999999995544332 3333 3334444443 2443 445656654 35555556655544445678999
Q ss_pred cCcccCccccHHHHH
Q 006958 212 KLDLMDKGTNALEVL 226 (624)
Q Consensus 212 K~D~~~~~~~~~~~l 226 (624)
|+|-..+|..+..+.
T Consensus 293 KlDgtAKGG~il~I~ 307 (340)
T COG0552 293 KLDGTAKGGIILSIA 307 (340)
T ss_pred ecccCCCcceeeeHH
Confidence 999877776554443
No 388
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.09 E-value=0.011 Score=54.68 Aligned_cols=90 Identities=20% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEE
Q 006958 162 IENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIV 241 (624)
Q Consensus 162 i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 241 (624)
++++.+.+++++|.++++ .+++......+ ..+.+.+...+.|.++|+||+|+.+... ..+...- .......++.++
T Consensus 2 ~~~~~~~i~~~aD~vl~V-~D~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~-~~~~~~~~~~iS 77 (156)
T cd01859 2 WKRLVRRIIKESDVVLEV-LDARDPELTRS-RKLERYVLELGKKLLIVLNKADLVPKEV-LEKWKSI-KESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHHhhCCEEEEE-eeCCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCCHHH-HHHHHHH-HHhCCCcEEEEE
Confidence 366788888899976664 45544332222 2244444445789999999999975321 1111000 011223455666
Q ss_pred eCChhhhccCCcHH
Q 006958 242 NRSQADINKNVDMI 255 (624)
Q Consensus 242 ~~s~~~~~~~~~~~ 255 (624)
+.++.+++++...+
T Consensus 78 a~~~~gi~~L~~~l 91 (156)
T cd01859 78 AKERLGTKILRRTI 91 (156)
T ss_pred ccccccHHHHHHHH
Confidence 66666555444433
No 389
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.06 E-value=0.0086 Score=61.98 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
-|.+||-||+||||++|.|-...+
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 577899999999999999987654
No 390
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.02 E-value=0.028 Score=58.65 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+|..+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 391
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.034 Score=56.74 Aligned_cols=27 Identities=33% Similarity=0.601 Sum_probs=24.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCC
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.+.-.|.|+|.||+|||+||+-|.+.+
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 367789999999999999999999875
No 392
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.95 E-value=0.027 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+.|+|+.||||||.-.++...
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h 26 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEH 26 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHH
Confidence 4679999999999999999743
No 393
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.85 E-value=0.09 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++|+|..++|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56899999999999999999973
No 394
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.84 E-value=0.059 Score=56.76 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.-+.|+|||+..||||||..-|++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5789999999999999998888765
No 395
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.80 E-value=0.0077 Score=56.34 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=25.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~ 65 (624)
-+++|+|..+||||||||-|.|.. .|.+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~-~P~~G 54 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE-TPASG 54 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc-CCCCc
Confidence 379999999999999999999986 46653
No 396
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.65 E-value=0.068 Score=51.29 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 159 ~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
...++.++..|++++|.+++++ ++....... ...+.. ...+.++++|+||+|+.+..
T Consensus 21 ~~~~~~~l~~~~~~ad~il~Vv-D~~~~~~~~-~~~l~~--~~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVV-DIFDFPGSL-IPRLRL--FGGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEE-ECccCCCcc-chhHHH--hcCCCcEEEEEEchhcCCCC
Confidence 3446889999999999776655 444321111 111211 12468999999999998643
No 397
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.64 E-value=0.016 Score=59.48 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|..||||||++..|.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999875
No 398
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.64 E-value=0.032 Score=57.43 Aligned_cols=76 Identities=28% Similarity=0.368 Sum_probs=42.7
Q ss_pred EEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh-cCCCEEEEEEecCCCcc--ccHHHHHHHHHhCCCCC
Q 006958 128 LSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV-EKPSCIILAISPANQDI--ATSDAIKLAREVDPTGE 204 (624)
Q Consensus 128 l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi-~~~~~iiL~V~~a~~d~--~~~~~~~l~~~~d~~~~ 204 (624)
++|+.....-+||||+.|--+ -.+..+...- .-+|.-.| .+-+|..+ .+.+.+.+|-.+ ..
T Consensus 211 vkIce~saKviTFIDLAGHEk------------YLKTTvFGMTGH~PDf~ML-MiGaNaGIiGmTKEHLgLALaL---~V 274 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEK------------YLKTTVFGMTGHMPDFTML-MIGANAGIIGMTKEHLGLALAL---HV 274 (641)
T ss_pred eeeccccceeEEEEeccchhh------------hhheeeeccccCCCCceEE-EecccccceeccHHhhhhhhhh---cC
Confidence 445555555689999999221 1111111111 13664333 45566543 234445454433 58
Q ss_pred ceEEEeccCcccCcc
Q 006958 205 RTFGVLTKLDLMDKG 219 (624)
Q Consensus 205 rti~VltK~D~~~~~ 219 (624)
|+++|+||+|.++..
T Consensus 275 PVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 275 PVFVVVTKIDMCPAN 289 (641)
T ss_pred cEEEEEEeeccCcHH
Confidence 999999999998753
No 399
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.067 Score=58.77 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
.+++||..|+||||+++.|.|. +|...|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 7999999999999999999995 454444
No 400
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.55 E-value=0.047 Score=61.38 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCC-CCceEEEecc
Q 006958 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPT-GERTFGVLTK 212 (624)
Q Consensus 159 ~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~-~~rti~VltK 212 (624)
+++=-.+++..+++++. |+.+.++..+.......+.+.+... ..+|++++++
T Consensus 475 QrQRiaiARall~~~~i--liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 475 ERQRLALARALLADAPI--LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred HHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 55556788899999994 3457776655544444444444332 4689998875
No 401
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.55 E-value=0.0077 Score=60.50 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCe
Q 006958 158 IVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPW 237 (624)
Q Consensus 158 ~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~ 237 (624)
+.+....+.+.|++++|.+++++...+.+.......++...+...+.+.++|+||+|+.+......+.... ....+..+
T Consensus 22 i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~-~~~~g~~v 100 (245)
T TIGR00157 22 IAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDI-YRNIGYQV 100 (245)
T ss_pred EecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHH-HHHCCCeE
Confidence 34445667777999999877755433233222222223333333578999999999997543211122211 11223345
Q ss_pred eEEEeCChhhhcc
Q 006958 238 VGIVNRSQADINK 250 (624)
Q Consensus 238 ~~v~~~s~~~~~~ 250 (624)
+.+++.++.++++
T Consensus 101 ~~~SAktg~gi~e 113 (245)
T TIGR00157 101 LMTSSKNQDGLKE 113 (245)
T ss_pred EEEecCCchhHHH
Confidence 5566655555433
No 402
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.52 E-value=0.013 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+..++.|+.+|||||++.||.=.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998744
No 403
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.50 E-value=0.017 Score=55.82 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=41.8
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHH----HHhhcCCCEEEEEEecCCCc-----c-ccHHHHHHHHHhCCCCCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMV----RSYVEKPSCIILAISPANQD-----I-ATSDAIKLAREVDPTGER 205 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~----~~yi~~~~~iiL~V~~a~~d-----~-~~~~~~~l~~~~d~~~~r 205 (624)
.-|.+||-.| | ...+++.. ..-.++.+++|. |.++..+ + ..+.+++...+..| ..+
T Consensus 53 l~LnlwDcGg--------q----e~fmen~~~~q~d~iF~nV~vli~-vFDves~e~~~D~~~yqk~Le~ll~~SP-~Ak 118 (295)
T KOG3886|consen 53 LVLNLWDCGG--------Q----EEFMENYLSSQEDNIFRNVQVLIY-VFDVESREMEKDFHYYQKCLEALLQNSP-EAK 118 (295)
T ss_pred heeehhccCC--------c----HHHHHHHHhhcchhhheeheeeee-eeeccchhhhhhHHHHHHHHHHHHhcCC-cce
Confidence 4578899988 1 12222221 123356776555 4444432 2 22445555555566 478
Q ss_pred eEEEeccCcccCccc
Q 006958 206 TFGVLTKLDLMDKGT 220 (624)
Q Consensus 206 ti~VltK~D~~~~~~ 220 (624)
+.+.++|+|++..+.
T Consensus 119 iF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 119 IFCLLHKMDLVQEDA 133 (295)
T ss_pred EEEEEeechhcccch
Confidence 899999999997754
No 404
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.071 Score=54.51 Aligned_cols=133 Identities=20% Similarity=0.324 Sum_probs=80.4
Q ss_pred CCCe--EEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006958 34 ALPS--VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (624)
Q Consensus 34 ~lP~--IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (624)
+.|. |.-+|.--.|||||--||+..- ... ...++..++++.+.=+
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkil--a~~----------------------------g~A~~~kydeID~APE--- 97 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKIL--AEK----------------------------GGAKFKKYDEIDKAPE--- 97 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHH--Hhc----------------------------cccccccHhhhhcChh---
Confidence 4454 5568999999999999998642 111 1223334444432211
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc-ccH
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI-ATS 190 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~-~~~ 190 (624)
.+.+|++-+.-.++..++. .++.=+|.||- .+-+++|+.... +-|..||+|...+... .+.
T Consensus 98 ----EkaRGITIn~aHveYeTa~-RhYaH~DCPGH------------ADYIKNMItGaa-qMDGaILVVaatDG~MPQTr 159 (449)
T KOG0460|consen 98 ----EKARGITINAAHVEYETAK-RHYAHTDCPGH------------ADYIKNMITGAA-QMDGAILVVAATDGPMPQTR 159 (449)
T ss_pred ----hhhccceEeeeeeeeeccc-cccccCCCCch------------HHHHHHhhcCcc-ccCceEEEEEcCCCCCcchH
Confidence 1234566566666666554 56778999992 344566655443 4566677554433222 334
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+.+-+|+++.- ..+++.+||.|+++..
T Consensus 160 EHlLLArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 160 EHLLLARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHHHHHHcCC--ceEEEEEecccccCCH
Confidence 55668999854 5677779999999653
No 405
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.48 E-value=0.013 Score=53.31 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHHHhhCCCccccc----cccccccc
Q 006958 38 VAVVGGQSSGKSSVLESVVGRDFLPRG----SGIVTRRP 72 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~~~lP~~----~~~~Tr~p 72 (624)
|+++|+++||||||++.|.+. +|.. ...+||.|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~--~~~~~~~~v~~tTr~p 38 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE--FDPNFGFSVSHTTRKP 38 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc--CCccceecccccccCC
Confidence 789999999999999999975 2322 23456666
No 406
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.0059 Score=63.30 Aligned_cols=135 Identities=18% Similarity=0.281 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++..|.|+..-.+||+|+-++|+-..=.-++.| +. +.+..++||-.+. +++
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g------------~v-----------ddgdtvtdfla~e------rer 86 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG------------DV-----------DDGDTVTDFLAIE------RER 86 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhccc------------cc-----------CCCchHHHHHHHH------Hhc
Confidence 566899999999999999999874321001111 11 1233445554432 211
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
| ..+-+-.+.+ ......+.+|||||-++.... +.+.++--|.++ +|.+++.+...+..
T Consensus 87 --g--itiqsaav~f---dwkg~rinlidtpghvdf~le-------------verclrvldgav-av~dasagve~qtl- 144 (753)
T KOG0464|consen 87 --G--ITIQSAAVNF---DWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGAV-AVFDASAGVEAQTL- 144 (753)
T ss_pred --C--ceeeeeeeec---ccccceEeeecCCCcceEEEE-------------HHHHHHHhcCeE-EEEeccCCccccee-
Confidence 1 1111222222 234478999999997765544 344455556544 46677666555432
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
..-++.+....|.++.+||+|.....
T Consensus 145 tvwrqadk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 145 TVWRQADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred eeehhccccCCchhhhhhhhhhhhhh
Confidence 24467788889999999999987543
No 407
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.44 E-value=0.028 Score=54.60 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHhhC
Q 006958 38 VAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g 57 (624)
-+|||+|||||||-.+..+.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47899999999999887764
No 408
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.14 Score=51.06 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=25.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T 69 (624)
.++|+|+.|||||||+.+|+|. ++...|.++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~ 62 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIK 62 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEE
Confidence 6999999999999999999995 344445444
No 409
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.22 E-value=0.027 Score=58.33 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=41.9
Q ss_pred CcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh-cCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEeccC
Q 006958 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV-EKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 137 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi-~~~~~iiL~V~~a~~d~~~--~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
-+.||||-|- +...+..++..+ ++.|-..| |+.|+..... .+.+-++- ..+.|+|+|+||+
T Consensus 202 lVsfVDtvGH------------EpwLrTtirGL~gqk~dYglL-vVaAddG~~~~tkEHLgi~~---a~~lPviVvvTK~ 265 (527)
T COG5258 202 LVSFVDTVGH------------EPWLRTTIRGLLGQKVDYGLL-VVAADDGVTKMTKEHLGIAL---AMELPVIVVVTKI 265 (527)
T ss_pred EEEEEecCCc------------cHHHHHHHHHHhccccceEEE-EEEccCCcchhhhHhhhhhh---hhcCCEEEEEEec
Confidence 4689999992 223344444444 56886544 6677765443 33333332 3468999999999
Q ss_pred cccCcc
Q 006958 214 DLMDKG 219 (624)
Q Consensus 214 D~~~~~ 219 (624)
|+.+..
T Consensus 266 D~~~dd 271 (527)
T COG5258 266 DMVPDD 271 (527)
T ss_pred ccCcHH
Confidence 998764
No 410
>PRK01889 GTPase RsgA; Reviewed
Probab=95.21 E-value=0.022 Score=60.47 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=32.5
Q ss_pred hcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 170 VEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 170 i~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+.+.|.+ ++|++++.++.....-+++..+...+.+.++|+||+|+++.
T Consensus 110 aANvD~v-liV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 110 AANVDTV-FIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED 157 (356)
T ss_pred EEeCCEE-EEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 4678864 44666666666544444444444457788999999999865
No 411
>PRK13695 putative NTPase; Provisional
Probab=95.21 E-value=0.074 Score=50.30 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 412
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.08 E-value=0.074 Score=46.53 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
.|+++|+.++||||++.++....|
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 589999999999999999976544
No 413
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.02 E-value=0.2 Score=52.91 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
++|..+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 414
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.98 E-value=0.034 Score=51.65 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHhhcCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 166 VRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 166 ~~~yi~~~~~iiL~V~~a~~d~~~--~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+.+.++++|.+++ |+++...... ....+.++.. ..+.|.|+|+||+|+.++.
T Consensus 2 ~~~~l~~aD~il~-VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 2 LYKVIDSSDVVIQ-VLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hhHhhhhCCEEEE-EEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH
Confidence 3466789996555 5566654332 2333333332 3358999999999998653
No 415
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.076 Score=49.87 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=82.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.++++|+-+.||+++.++.+-..| ....+-++-+..+.+
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeF-----e~~y~at~Gv~~~pl----------------------------------- 50 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEF-----EKTYPATLGVEVHPL----------------------------------- 50 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccc-----eecccCcceeEEeee-----------------------------------
Confidence 3689999999999999999887777 322222222211111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAIK 194 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~-~~~~~ 194 (624)
+..+ ..+...+..|||.|--..... --.-||+..-+||++=+.+..-..+ ..|..
T Consensus 51 ----------~f~t--n~g~irf~~wdtagqEk~ggl------------rdgyyI~~qcAiimFdVtsr~t~~n~~rwhr 106 (216)
T KOG0096|consen 51 ----------LFDT--NRGQIRFNVWDTAGQEKKGGL------------RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHR 106 (216)
T ss_pred ----------eeec--ccCcEEEEeeecccceeeccc------------ccccEEecceeEEEeeeeehhhhhcchHHHH
Confidence 0000 111345788999994332211 0124777777776652222222222 33433
Q ss_pred -HHHHhCCCCCceEEEeccCcccCccccH--HHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 195 -LAREVDPTGERTFGVLTKLDLMDKGTNA--LEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 195 -l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
+++ +.. ..|++...||.|...+.... ..+. ....+.|+.+++.|.-+....+-++.+
T Consensus 107 d~~r-v~~-NiPiv~cGNKvDi~~r~~k~k~v~~~----rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 107 DLVR-VRE-NIPIVLCGNKVDIKARKVKAKPVSFH----RKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred HHHH-Hhc-CCCeeeeccceeccccccccccceee----ecccceeEEeecccccccccchHHHhh
Confidence 333 333 27999999999987765221 1111 122356777777776655554444443
No 416
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.95 E-value=0.024 Score=53.88 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|.++|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 417
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.89 E-value=0.18 Score=48.90 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 006958 37 SVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~ 56 (624)
.+++.|+.++||||++..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 418
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.85 E-value=0.023 Score=54.65 Aligned_cols=28 Identities=32% Similarity=0.652 Sum_probs=23.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~ 64 (624)
-.|.|+|..+|||||++|+|+|. ..|.+
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~-l~~t~ 60 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGD-LKPTS 60 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCc-cccCC
Confidence 37999999999999999999997 33443
No 419
>PRK12289 GTPase RsgA; Reviewed
Probab=94.85 E-value=0.036 Score=58.52 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 163 ~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..+.+.++.++|.+++++...+.++......+++..+...+.+.++|+||+|+++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP 135 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh
Confidence 34556678999976665543333333322223333334468999999999999854
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.83 E-value=0.022 Score=54.60 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=24.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~ 67 (624)
-.++++|.++|||||++++|+|. +|.+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~--i~~~~~~ 55 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF--IPPDERI 55 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh--cCCCCCE
Confidence 36999999999999999999986 3544343
No 421
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.83 E-value=0.021 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999865
No 422
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.021 Score=53.76 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=29.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p 72 (624)
-+++.|+.|+|||||+.+|....-+--+-+.+||.|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 589999999999999999997754444456778877
No 423
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.75 E-value=0.022 Score=51.32 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++|+|..++|||||+++|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999999984
No 424
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.75 E-value=0.12 Score=60.32 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEecc
Q 006958 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 159 ~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK 212 (624)
+++--.+++..+++++.+ +.+.++..+.......+.+.+.. ..+|++++|+
T Consensus 620 QrQRiaLARall~~p~il--iLDEptS~LD~~te~~i~~~l~~-~~~T~IiitH 670 (710)
T TIGR03796 620 QRQRLEIARALVRNPSIL--ILDEATSALDPETEKIIDDNLRR-RGCTCIIVAH 670 (710)
T ss_pred HHHHHHHHHHHhhCCCEE--EEECccccCCHHHHHHHHHHHHh-cCCEEEEEec
Confidence 555667888999999944 35666665555444445555544 3678888876
No 425
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.68 E-value=0.023 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~ 56 (624)
+.|.|+|+|.+||||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999999
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.66 E-value=0.027 Score=54.78 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=27.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC-ccccccccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 72 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p 72 (624)
-.|+++|.+|||||||++.|.+.. -+....+.+||.|
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 369999999999999999999862 1223334567777
No 427
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.65 E-value=0.16 Score=57.95 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPR 63 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~ 63 (624)
.+++||+.|||||||++.|.|. . |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~-~-p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGF-L-PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcC-C-CC
Confidence 6899999999999999999996 3 65
No 428
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.65 E-value=0.13 Score=58.79 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.|+|+|..|+|||||++.|+|.-
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999973
No 429
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.64 E-value=0.1 Score=53.46 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 163 ~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...+...++.+|.|++ |.++........ ..+.+.+ .+.+.|+|+||+|+.++
T Consensus 12 ~~~~~~~l~~aDvVl~-V~Dar~p~~~~~-~~i~~~l--~~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 12 RREIKEKLKLVDVVIE-VLDARIPLSSRN-PMIDEIR--GNKPRLIVLNKADLADP 63 (276)
T ss_pred HHHHHHHHhhCCEEEE-EEeCCCCCCCCC-hhHHHHH--CCCCEEEEEEccccCCH
Confidence 3445788899996555 556654433322 1233333 26799999999999754
No 430
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.64 E-value=0.019 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=17.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999965
No 431
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.028 Score=52.09 Aligned_cols=31 Identities=39% Similarity=0.710 Sum_probs=25.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T 69 (624)
.+.+||..+|||||||++|+++ ++-.+|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 6899999999999999999997 455555544
No 432
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.027 Score=55.61 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~ 64 (624)
.|+++|+.|+||||||+.|.|..- |.+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 799999999999999999999863 444
No 433
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.51 E-value=0.47 Score=49.53 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.|..++-|-=||||||+||.|+...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4788999999999999999999764
No 434
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.49 E-value=0.037 Score=53.06 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=27.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC-ccccccccccccc
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 72 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p 72 (624)
..-|+++|++|||||||+++|.... -+...-..+||.|
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 3469999999999999999998752 1122334566665
No 435
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=94.48 E-value=0.088 Score=49.65 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 160 EDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 160 ~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..+.+.+...++++|.+++ |+++.......+. .+...+ .+.+.++|+||+|+.+.
T Consensus 7 ~~~~~~~~~~i~~aD~il~-v~D~~~~~~~~~~-~i~~~~--~~k~~ilVlNK~Dl~~~ 61 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIE-VRDARIPLSSRNP-LLEKIL--GNKPRIIVLNKADLADP 61 (171)
T ss_pred HHHHHHHHHHHhhCCEEEE-EeeccCccCcCCh-hhHhHh--cCCCEEEEEehhhcCCh
Confidence 3445556889999996554 5566543333222 133333 25789999999999743
No 436
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.45 E-value=0.44 Score=46.22 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++|+|+.++||||++..|.+..
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHH
Confidence 79999999999999999999543
No 437
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.35 E-value=0.18 Score=57.37 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+++||+.|||||||++.|.|.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999996
No 438
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.33 E-value=0.18 Score=58.65 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEecc
Q 006958 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 159 ~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK 212 (624)
+++--.+++..+++++.+ +.+.++..+.......+.+.+...+ +|++++|+
T Consensus 593 QrQRialARAll~~p~iL--iLDEpTS~LD~~te~~i~~~L~~~~-~T~IiItH 643 (686)
T TIGR03797 593 QRQRLLIARALVRKPRIL--LFDEATSALDNRTQAIVSESLERLK-VTRIVIAH 643 (686)
T ss_pred HHHHHHHHHHHhcCCCEE--EEeCCccCCCHHHHHHHHHHHHHhC-CeEEEEec
Confidence 555567888999999943 3566666554444444444444433 68888886
No 439
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.23 E-value=0.084 Score=39.71 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCEEEEEEecCCC--ccccHHHHHHHHHhCCC--CCceEEEeccCc
Q 006958 163 ENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPT--GERTFGVLTKLD 214 (624)
Q Consensus 163 ~~~~~~yi~~~~~iiL~V~~a~~--d~~~~~~~~l~~~~d~~--~~rti~VltK~D 214 (624)
+..+-..+++-.+.||++.+.+. +.+.++-+.+.+++.+. +.|.+.|+||+|
T Consensus 3 E~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 3 EMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34445566664445666665543 45555555666666654 689999999998
No 440
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=0.18 Score=60.63 Aligned_cols=83 Identities=25% Similarity=0.217 Sum_probs=45.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHH---HHHHHHhh--cCCCEEEEEEecCCC---ccccHHH--------HHHHHHh
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDI---ENMVRSYV--EKPSCIILAISPANQ---DIATSDA--------IKLAREV 199 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i---~~~~~~yi--~~~~~iiL~V~~a~~---d~~~~~~--------~~l~~~~ 199 (624)
..-++|||.|-..... ++++...... -.+.++|= +.-|.|||++.-+.- +.+..++ ++-+++.
T Consensus 174 deaVlIDtaGry~~q~-s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t 252 (1188)
T COG3523 174 DEAVLIDTAGRYITQD-SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET 252 (1188)
T ss_pred cceEEEcCCcceeccc-CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999665443 2333323322 23444443 457889987653321 1111111 1111222
Q ss_pred CCCCCceEEEeccCcccCcc
Q 006958 200 DPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 200 d~~~~rti~VltK~D~~~~~ 219 (624)
-...-|+.+++||.|++..-
T Consensus 253 L~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 253 LHARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred hccCCceEEEEecccccccH
Confidence 23467999999999998743
No 441
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=94.13 E-value=0.052 Score=57.91 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.-+.|||.||-.+.++ -+...++-.|.. |+|+++-.+.+.+..- .+++.-....+-++|+||+|.
T Consensus 98 FLiNLIDSPGHVDFSS-------------EVTAALRVTDGA-LVVVDcv~GvCVQTET-VLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSS-------------EVTAALRVTDGA-LVVVDCVSGVCVQTET-VLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccchh-------------hhhheeEeccCc-EEEEEccCceEechHH-HHHHHHHhhccceEEeehhhH
Confidence 4578999999776543 256677777764 4566776666665443 445554456667899999996
Q ss_pred c
Q 006958 216 M 216 (624)
Q Consensus 216 ~ 216 (624)
.
T Consensus 163 A 163 (842)
T KOG0469|consen 163 A 163 (842)
T ss_pred H
Confidence 3
No 442
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.13 E-value=0.046 Score=53.42 Aligned_cols=29 Identities=38% Similarity=0.395 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~ 67 (624)
.++++|+.|||||||++.|+|.. |..+|-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 57 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSGE 57 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCce
Confidence 58999999999999999999973 434443
No 443
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=94.13 E-value=0.13 Score=52.98 Aligned_cols=52 Identities=13% Similarity=0.251 Sum_probs=33.5
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 163 ~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...+.+.++.+|.|++ |.++......... .+.+.+. +.+.++|+||+|+.+.
T Consensus 15 ~~~l~~~l~~aDvIL~-VvDar~p~~~~~~-~l~~~~~--~kp~iiVlNK~DL~~~ 66 (287)
T PRK09563 15 RREIKENLKLVDVVIE-VLDARIPLSSENP-MIDKIIG--NKPRLLILNKSDLADP 66 (287)
T ss_pred HHHHHHHhhhCCEEEE-EEECCCCCCCCCh-hHHHHhC--CCCEEEEEEchhcCCH
Confidence 3445788899996555 5666554443322 1333332 6899999999999754
No 444
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.11 E-value=0.13 Score=58.53 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.|+++|+.|+|||||++.|+|.-
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999999973
No 445
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.10 E-value=0.064 Score=48.82 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=33.6
Q ss_pred HHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 165 MVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 165 ~~~~yi~~~~~iiL~V~~a~~d~~~~--~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+.+.++++|.+++ |.++....... ....++.... .+.+.++|+||+|+.++
T Consensus 4 ~~~~~i~~aD~vl~-ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 4 QLWRVVERSDIVVQ-IVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHhhCCEEEE-EEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCH
Confidence 46778899996655 55665544433 2233333322 37899999999999754
No 446
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.045 Score=54.48 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 447
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.02 E-value=0.046 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 448
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.045 Score=53.46 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=24.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
..++++|+.|||||||++.|.|. +|..+|
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 54 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATL--TPPSSG 54 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCC--CCCCcc
Confidence 38999999999999999999996 344444
No 449
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.02 E-value=0.044 Score=53.80 Aligned_cols=29 Identities=41% Similarity=0.436 Sum_probs=24.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~ 67 (624)
.++|+|+.|||||||++.|+|. +|...|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~ 60 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL--DRPTSGE 60 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--cCCCcee
Confidence 6899999999999999999997 3434443
No 450
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.99 E-value=0.048 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|..+|||||+|++|+|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 451
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.96 E-value=0.042 Score=48.26 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 452
>PHA02518 ParA-like protein; Provisional
Probab=93.94 E-value=0.47 Score=46.02 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=35.9
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHHHHHHHh---CCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAIKLAREV---DPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~-~~~~~l~~~~---d~~~~rti~Vl 210 (624)
..+++||||||-. ..++...+..+|.+|+.+.+...++.. .....+++.. .+...+..+|.
T Consensus 76 ~~d~viiD~p~~~---------------~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 140 (211)
T PHA02518 76 GYDYVVVDGAPQD---------------SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFII 140 (211)
T ss_pred cCCEEEEeCCCCc---------------cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEE
Confidence 3689999999942 234566777899776655554433322 1222333332 22222344566
Q ss_pred ccCcc
Q 006958 211 TKLDL 215 (624)
Q Consensus 211 tK~D~ 215 (624)
|+.+.
T Consensus 141 n~~~~ 145 (211)
T PHA02518 141 SRAIK 145 (211)
T ss_pred eccCC
Confidence 77653
No 453
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.92 E-value=0.051 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
-.++++|+.+||||||++.|+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 378999999999999999999973
No 454
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.90 E-value=0.052 Score=42.87 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~ 58 (624)
|++.|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 455
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.05 Score=53.59 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 456
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.87 E-value=0.24 Score=55.75 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|+|||||++.|+|.
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999996
No 457
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.87 E-value=0.055 Score=52.01 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~ 64 (624)
..+|+|+.+|||||||.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 6899999999999999999997 44544
No 458
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.86 E-value=0.054 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 459
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.82 E-value=0.056 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 460
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.81 E-value=0.053 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 461
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.80 E-value=0.056 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 462
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.80 E-value=0.049 Score=57.37 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=26.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T 69 (624)
..|+|+|.+||||||++++|++. +|.+..++|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 47999999999999999999985 465555444
No 463
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.80 E-value=0.059 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999974
No 464
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.80 E-value=0.23 Score=56.59 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999996
No 465
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.79 E-value=0.33 Score=55.07 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+++||+.||||||+++.|.|.
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999986
No 466
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.79 E-value=0.055 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|..|||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 467
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.79 E-value=0.054 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 468
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.79 E-value=0.059 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=17.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..+-++|.|.+|+|||||++++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4588999999999999999998864
No 469
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.78 E-value=0.058 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 470
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.5 Score=50.08 Aligned_cols=29 Identities=31% Similarity=0.647 Sum_probs=24.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~ 65 (624)
-+|++||+.++||||||.-|+|. +-|...
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk-l~P~~G 642 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK-LDPNDG 642 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC-CCCCcc
Confidence 38999999999999999999997 446554
No 471
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.76 E-value=0.054 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-.++++|+.|||||||++.|+|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999997
No 472
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.75 E-value=0.23 Score=57.97 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|+.|||||||++.|+|.
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999997
No 473
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.059 Score=53.53 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=23.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
.++++|+.|||||||++.|+|. +|...|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL--ERPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCc
Confidence 7899999999999999999997 344444
No 474
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.059 Score=52.59 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 475
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.059 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 476
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.71 E-value=0.056 Score=56.16 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=24.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~ 68 (624)
.++++|..|||||||++.|+|. +|..+|.+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i 64 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGTI 64 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcEE
Confidence 7999999999999999999996 34444543
No 477
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.062 Score=51.04 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 478
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.66 E-value=0.019 Score=56.32 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+++||+.+||||||+|-|+|.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred EEEEECCCCCCceeeeeeeccc
Confidence 5899999999999999999996
No 479
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.64 E-value=0.059 Score=53.99 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
.++++|+.||||||||.+|.|. ++-..|
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~--l~p~~G 57 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL--LKPKSG 57 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc--CCCCCC
Confidence 5899999999999999999996 444434
No 480
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.057 Score=53.71 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 481
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=93.61 E-value=0.37 Score=52.79 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=81.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC------Ccceee-------------c-cCCCC-
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG------TDYAEF-------------L-HAPRK- 95 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~------~~~~~~-------------~-~~~~~- 95 (624)
-.+++|..+||||||++-|+|. .|.++|...----.+...+..+. ..|.+. + +.|..
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv--~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~ 113 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGV--YPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRR 113 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCc--ccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccC
Confidence 5799999999999999999997 35555522211101110000000 111111 1 12222
Q ss_pred -ccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCC
Q 006958 96 -KFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPS 174 (624)
Q Consensus 96 -~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~ 174 (624)
-+.|+........+...++.. . ..++-.+=|+++ -++++-++++....++.
T Consensus 114 ~g~id~~~m~~~A~~~l~~lg~--------------~--~~~~~~v~~Lsi------------aqrQ~VeIArAl~~~ar 165 (500)
T COG1129 114 FGLIDRKAMRRRARELLARLGL--------------D--IDPDTLVGDLSI------------AQRQMVEIARALSFDAR 165 (500)
T ss_pred CCccCHHHHHHHHHHHHHHcCC--------------C--CChhhhhhhCCH------------HHHHHHHHHHHHhcCCC
Confidence 234666666555544443321 0 113333344444 36778888888888888
Q ss_pred EEEEEEecCCCccccHHH---HHHHHHhCCCCCceEEEeccCccc
Q 006958 175 CIILAISPANQDIATSDA---IKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 175 ~iiL~V~~a~~d~~~~~~---~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
.+| .+-.+..++..+. +.+++.+...|.-+|+|--|+|.+
T Consensus 166 llI--lDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei 208 (500)
T COG1129 166 VLI--LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEV 208 (500)
T ss_pred EEE--EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 444 3555555555444 557778888888888887776643
No 482
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.068 Score=49.57 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=25.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~ 68 (624)
..++++|+.++|||||++.|.|.- |...|.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i 56 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEI 56 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEE
Confidence 478999999999999999999973 4444543
No 483
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.59 E-value=0.06 Score=53.00 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|..|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 484
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.58 E-value=0.064 Score=54.21 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=25.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T 69 (624)
-.++|+|..|||||||++.|+|. ++-.+|.++
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I~ 58 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK--LKPNLGKFD 58 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--cCCCCceEe
Confidence 37999999999999999999997 344455443
No 485
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.58 E-value=0.059 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999997
No 486
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.57 E-value=0.051 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|.++|+|..|||||||+++|.+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5689999999999999999999976
No 487
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.57 E-value=0.066 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
-.++++|+.|+|||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999973
No 488
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.55 E-value=0.27 Score=56.14 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|++||..|+|||||++.|+|.
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999997
No 489
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.067 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
.++|+|+.|+|||||++.|+|.. |-..|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKG 58 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 58999999999999999999973 44444
No 490
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.53 E-value=0.071 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
-.++++|+.++|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999974
No 491
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.53 E-value=0.067 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|..|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 492
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.52 E-value=0.069 Score=52.22 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
.++++|+.|||||||++.|+|. +|..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G 55 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL--EEPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCc
Confidence 6899999999999999999997 344444
No 493
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.51 E-value=0.55 Score=38.72 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~ 58 (624)
|++.|..++|||++...+...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999998854
No 494
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.50 E-value=0.066 Score=52.53 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~ 68 (624)
.++++|+.|||||||++.|+|.. |-.+|-+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 68899999999999999999973 4344544
No 495
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.49 E-value=0.069 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++|+|+.|||||||++.|+|.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 496
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.49 E-value=0.071 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|.+|||||||+++|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 4778899999999999999854
No 497
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.48 E-value=0.072 Score=51.70 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=24.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
-.++++|..|+|||||++.|.|.. |..+|
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 379999999999999999999963 44444
No 498
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.47 E-value=0.52 Score=52.59 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=27.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p 72 (624)
=+|.+||..|+||||||+.|+|.. .|.+ |.+++-+
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~-~~~~-G~i~~~~ 64 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGEL-EPDS-GEVTRPK 64 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC-cCCC-CeEeecC
Confidence 489999999999999999999985 3544 5444444
No 499
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=93.47 E-value=0.12 Score=47.74 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=25.4
Q ss_pred EEEEecCCCccccHHHHHHH-HHhCCCCCceEEEeccCcccCc
Q 006958 177 ILAISPANQDIATSDAIKLA-REVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 177 iL~V~~a~~d~~~~~~~~l~-~~~d~~~~rti~VltK~D~~~~ 218 (624)
+++|+++......... .+. ..+...+.|.|+|+||+|+.++
T Consensus 3 vl~VvD~~~p~~~~~~-~i~~~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 3 ILEVLDARDPLGTRSP-DIERVLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred EEEEEeccCCccccCH-HHHHHHHhcCCCCEEEEEechhcCCH
Confidence 4456666544333222 133 3445567999999999999764
No 500
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.45 E-value=0.068 Score=53.19 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
.++++|..|||||||+..|+|. +|..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G 55 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF--LRPTSG 55 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC--CCCCCc
Confidence 6899999999999999999996 343444
Done!