Query 006958
Match_columns 624
No_of_seqs 386 out of 2947
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 13:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.1E-96 4E-101 831.5 60.5 609 3-623 25-767 (772)
2 3szr_A Interferon-induced GTP- 100.0 3.3E-85 1.1E-89 736.5 53.5 565 14-622 30-607 (608)
3 3t34_A Dynamin-related protein 100.0 1.4E-50 4.7E-55 429.4 30.6 328 4-331 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 1.5E-47 5.1E-52 404.8 38.1 339 3-349 5-345 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 3.8E-40 1.3E-44 342.7 30.8 309 5-320 1-315 (315)
6 3ljb_A Interferon-induced GTP- 100.0 8.9E-40 3E-44 324.7 21.7 260 328-597 3-271 (271)
7 2aka_B Dynamin-1; fusion prote 100.0 5.1E-38 1.7E-42 324.1 35.4 298 4-309 1-298 (299)
8 2j69_A Bacterial dynamin-like 99.8 2.3E-17 7.7E-22 187.9 28.1 173 34-219 68-246 (695)
9 3iev_A GTP-binding protein ERA 99.7 4E-18 1.4E-22 176.0 12.5 218 34-310 9-228 (308)
10 1wf3_A GTP-binding protein; GT 99.7 3.4E-18 1.2E-22 175.7 7.8 210 34-311 6-221 (301)
11 1ega_A Protein (GTP-binding pr 99.6 5.5E-17 1.9E-21 166.8 0.9 208 34-307 7-218 (301)
12 4dhe_A Probable GTP-binding pr 99.5 1.6E-14 5.5E-19 141.2 10.0 130 34-219 28-160 (223)
13 3iby_A Ferrous iron transport 99.5 1E-14 3.4E-19 146.3 7.7 153 35-253 1-159 (256)
14 1mky_A Probable GTP-binding pr 99.5 2.6E-14 8.8E-19 154.8 8.2 163 35-261 1-166 (439)
15 2xtp_A GTPase IMAP family memb 99.5 4.5E-14 1.5E-18 141.9 9.4 127 34-218 21-154 (260)
16 1svi_A GTP-binding protein YSX 99.5 1.5E-13 5.1E-18 131.1 11.2 126 34-219 22-150 (195)
17 3pqc_A Probable GTP-binding pr 99.5 1.9E-13 6.4E-18 130.1 11.5 160 34-255 22-188 (195)
18 2hjg_A GTP-binding protein ENG 99.5 1E-13 3.5E-18 149.9 10.9 157 35-256 3-160 (436)
19 3gee_A MNME, tRNA modification 99.5 3.8E-14 1.3E-18 154.1 7.1 157 36-256 234-393 (476)
20 2dyk_A GTP-binding protein; GT 99.5 1E-13 3.5E-18 127.7 8.8 149 35-251 1-152 (161)
21 3tkl_A RAS-related protein RAB 99.5 9.9E-14 3.4E-18 132.4 8.9 161 34-259 15-177 (196)
22 1xzp_A Probable tRNA modificat 99.5 1.1E-13 3.9E-18 150.4 10.5 158 36-258 244-402 (482)
23 1kao_A RAP2A; GTP-binding prot 99.5 2.2E-13 7.5E-18 125.9 10.9 151 36-257 4-162 (167)
24 3t5d_A Septin-7; GTP-binding p 99.5 1.8E-13 6.1E-18 138.7 11.1 137 36-219 9-160 (274)
25 3lxw_A GTPase IMAP family memb 99.5 1.4E-13 4.9E-18 137.2 10.1 128 34-218 20-154 (247)
26 1z08_A RAS-related protein RAB 99.4 6.4E-14 2.2E-18 130.3 6.8 152 34-255 5-163 (170)
27 2qu8_A Putative nucleolar GTP- 99.4 2.4E-13 8.3E-18 133.7 11.0 134 27-218 21-157 (228)
28 2g6b_A RAS-related protein RAB 99.4 1.4E-13 4.9E-18 129.2 9.0 120 34-218 9-131 (180)
29 2fg5_A RAB-22B, RAS-related pr 99.4 3E-14 1E-18 136.1 4.2 151 34-254 22-179 (192)
30 3q72_A GTP-binding protein RAD 99.4 1E-13 3.6E-18 128.4 7.7 154 35-256 2-159 (166)
31 2bme_A RAB4A, RAS-related prot 99.4 1.6E-13 5.6E-18 129.7 8.8 157 34-257 9-169 (186)
32 3geh_A MNME, tRNA modification 99.4 7.8E-14 2.7E-18 151.1 7.3 156 36-257 225-380 (462)
33 1u8z_A RAS-related protein RAL 99.4 1.9E-13 6.5E-18 126.4 8.9 117 35-218 4-124 (168)
34 1z0f_A RAB14, member RAS oncog 99.4 1.5E-13 5.2E-18 128.7 8.4 149 34-252 14-169 (179)
35 3lxx_A GTPase IMAP family memb 99.4 2E-13 6.8E-18 135.4 9.6 129 34-219 28-161 (239)
36 3dz8_A RAS-related protein RAB 99.4 1.5E-13 5.3E-18 130.9 8.4 157 34-255 22-180 (191)
37 1g16_A RAS-related protein SEC 99.4 7.9E-14 2.7E-18 129.5 6.2 153 35-256 3-160 (170)
38 2il1_A RAB12; G-protein, GDP, 99.4 1.5E-13 5.2E-18 131.2 8.3 119 34-218 25-146 (192)
39 4dcu_A GTP-binding protein ENG 99.4 2E-13 6.8E-18 148.5 9.9 126 33-218 21-146 (456)
40 2f7s_A C25KG, RAS-related prot 99.4 5.1E-13 1.8E-17 129.9 11.7 105 136-258 84-196 (217)
41 2nzj_A GTP-binding protein REM 99.4 2.2E-13 7.6E-18 127.2 8.6 158 34-256 3-164 (175)
42 3a1s_A Iron(II) transport prot 99.4 2.2E-13 7.5E-18 136.7 9.1 154 34-256 4-162 (258)
43 3bc1_A RAS-related protein RAB 99.4 2.5E-13 8.7E-18 129.0 9.0 69 136-218 70-142 (195)
44 3tw8_B RAS-related protein RAB 99.4 4.9E-14 1.7E-18 132.3 4.0 118 34-218 8-128 (181)
45 1zbd_A Rabphilin-3A; G protein 99.4 3.1E-13 1.1E-17 129.9 9.5 119 34-218 7-128 (203)
46 2oil_A CATX-8, RAS-related pro 99.4 5.8E-13 2E-17 127.0 11.0 119 34-218 24-145 (193)
47 1ky3_A GTP-binding protein YPT 99.4 2.5E-13 8.6E-18 127.6 8.3 156 34-257 7-174 (182)
48 4dcu_A GTP-binding protein ENG 99.4 7.1E-13 2.4E-17 144.2 12.9 128 34-219 194-322 (456)
49 2ew1_A RAS-related protein RAB 99.4 2.8E-13 9.7E-18 130.6 8.7 155 34-257 25-185 (201)
50 4djt_A GTP-binding nuclear pro 99.4 2.1E-13 7.3E-18 132.7 7.9 111 136-260 61-174 (218)
51 3clv_A RAB5 protein, putative; 99.4 3.1E-13 1E-17 129.4 8.7 102 136-255 93-198 (208)
52 1z0j_A RAB-22, RAS-related pro 99.4 3.7E-13 1.3E-17 125.0 8.9 118 35-218 6-126 (170)
53 2o52_A RAS-related protein RAB 99.4 3.3E-13 1.1E-17 129.8 8.9 156 34-259 24-186 (200)
54 3cph_A RAS-related protein SEC 99.4 2.4E-13 8.1E-18 131.7 7.9 159 34-261 19-182 (213)
55 2a9k_A RAS-related protein RAL 99.4 7.7E-13 2.6E-17 124.8 11.2 155 34-259 17-179 (187)
56 3i8s_A Ferrous iron transport 99.4 3.1E-13 1E-17 136.9 8.8 151 35-251 3-159 (274)
57 3b1v_A Ferrous iron uptake tra 99.4 2.8E-13 9.6E-18 136.9 8.3 149 35-253 3-156 (272)
58 2hup_A RAS-related protein RAB 99.4 3E-13 1E-17 130.3 8.1 155 34-257 28-189 (201)
59 1wms_A RAB-9, RAB9, RAS-relate 99.4 2.7E-13 9.4E-18 127.0 7.6 153 34-255 6-168 (177)
60 2gj8_A MNME, tRNA modification 99.4 5.3E-13 1.8E-17 125.2 9.5 125 36-218 5-130 (172)
61 2a5j_A RAS-related protein RAB 99.4 2.5E-13 8.4E-18 129.5 7.3 154 34-256 20-179 (191)
62 2qpt_A EH domain-containing pr 99.4 4.4E-13 1.5E-17 148.5 10.3 165 34-218 64-233 (550)
63 1z06_A RAS-related protein RAB 99.4 5.6E-13 1.9E-17 126.7 9.7 120 34-218 19-142 (189)
64 2gf9_A RAS-related protein RAB 99.4 8.2E-13 2.8E-17 125.5 10.8 120 34-218 21-142 (189)
65 2y8e_A RAB-protein 6, GH09086P 99.4 1.7E-13 5.7E-18 128.5 5.8 150 36-251 15-167 (179)
66 2bov_A RAla, RAS-related prote 99.4 8.5E-13 2.9E-17 126.9 10.9 157 34-260 13-176 (206)
67 4dsu_A GTPase KRAS, isoform 2B 99.4 5.4E-13 1.8E-17 126.3 9.3 157 36-259 5-164 (189)
68 1ek0_A Protein (GTP-binding pr 99.4 2.9E-13 9.9E-18 125.5 7.0 117 36-218 4-123 (170)
69 2qtf_A Protein HFLX, GTP-bindi 99.4 1.8E-12 6.1E-17 136.3 13.8 127 34-219 178-308 (364)
70 1c1y_A RAS-related protein RAP 99.4 4.6E-13 1.6E-17 123.9 8.3 117 36-218 4-123 (167)
71 2hjg_A GTP-binding protein ENG 99.4 1.1E-12 3.8E-17 141.8 12.5 165 34-256 174-344 (436)
72 2lkc_A Translation initiation 99.4 1.1E-12 3.8E-17 122.9 10.9 155 34-257 7-167 (178)
73 2bcg_Y Protein YP2, GTP-bindin 99.4 3E-13 1E-17 130.4 7.2 119 34-218 7-128 (206)
74 3kkq_A RAS-related protein M-R 99.4 3.8E-13 1.3E-17 126.9 7.5 157 34-256 17-177 (183)
75 2fn4_A P23, RAS-related protei 99.4 9.4E-13 3.2E-17 123.5 10.2 157 34-257 8-168 (181)
76 1z2a_A RAS-related protein RAB 99.4 2.1E-13 7.1E-18 126.4 5.5 119 34-218 4-124 (168)
77 2efe_B Small GTP-binding prote 99.4 5.2E-13 1.8E-17 125.5 8.2 120 34-219 11-133 (181)
78 2cxx_A Probable GTP-binding pr 99.4 1.1E-12 3.7E-17 124.3 10.5 124 35-219 1-138 (190)
79 2fu5_C RAS-related protein RAB 99.4 2.2E-13 7.6E-18 128.5 5.4 119 34-218 7-128 (183)
80 3q85_A GTP-binding protein REM 99.4 5.1E-13 1.7E-17 124.1 7.7 158 35-256 2-162 (169)
81 2erx_A GTP-binding protein DI- 99.4 5.4E-13 1.8E-17 124.0 7.8 118 36-219 4-125 (172)
82 1upt_A ARL1, ADP-ribosylation 99.4 5.1E-13 1.8E-17 124.2 7.6 115 34-219 6-124 (171)
83 1r8s_A ADP-ribosylation factor 99.4 9.2E-13 3.2E-17 121.7 9.2 111 37-218 2-116 (164)
84 2p5s_A RAS and EF-hand domain 99.4 2.1E-13 7E-18 131.0 4.8 119 34-217 27-147 (199)
85 4bas_A ADP-ribosylation factor 99.4 5.1E-13 1.7E-17 127.7 7.5 157 33-258 15-186 (199)
86 1r2q_A RAS-related protein RAB 99.4 5.8E-13 2E-17 123.5 7.5 118 35-218 6-126 (170)
87 3oes_A GTPase rhebl1; small GT 99.4 6.6E-13 2.3E-17 127.7 8.0 159 34-259 23-185 (201)
88 2hxs_A RAB-26, RAS-related pro 99.4 6.3E-13 2.1E-17 124.6 7.6 153 34-255 5-167 (178)
89 2ce2_X GTPase HRAS; signaling 99.4 7.1E-13 2.4E-17 122.1 7.8 149 36-255 4-159 (166)
90 1zj6_A ADP-ribosylation factor 99.4 1.1E-12 3.9E-17 124.3 9.3 114 34-218 15-132 (187)
91 2yc2_C IFT27, small RAB-relate 99.4 4.8E-13 1.7E-17 128.7 6.6 68 136-217 73-146 (208)
92 1lnz_A SPO0B-associated GTP-bi 99.4 1.5E-13 5.3E-18 143.1 3.3 161 35-256 158-325 (342)
93 1vg8_A RAS-related protein RAB 99.4 5.5E-13 1.9E-17 128.4 6.9 156 34-255 7-169 (207)
94 3con_A GTPase NRAS; structural 99.4 1.6E-12 5.3E-17 123.6 9.6 151 34-255 20-177 (190)
95 2wji_A Ferrous iron transport 99.3 1.7E-12 5.8E-17 120.7 9.3 117 36-217 4-122 (165)
96 3k53_A Ferrous iron transport 99.3 4.4E-13 1.5E-17 135.6 5.7 153 34-256 2-161 (271)
97 4dkx_A RAS-related protein RAB 99.3 4E-13 1.4E-17 131.0 5.2 151 37-256 15-171 (216)
98 1x3s_A RAS-related protein RAB 99.3 3.1E-12 1.1E-16 121.7 11.2 156 34-259 14-176 (195)
99 2h57_A ADP-ribosylation factor 99.3 9.4E-13 3.2E-17 125.3 7.4 116 34-218 20-141 (190)
100 3t5g_A GTP-binding protein RHE 99.3 1.4E-12 4.7E-17 122.8 8.5 158 34-258 5-166 (181)
101 1ksh_A ARF-like protein 2; sma 99.3 2.3E-12 8E-17 121.9 9.9 155 34-259 17-178 (186)
102 1zd9_A ADP-ribosylation factor 99.3 4.3E-12 1.5E-16 120.5 11.1 114 35-218 22-139 (188)
103 2fh5_B SR-beta, signal recogni 99.3 4.3E-12 1.5E-16 123.1 10.6 119 34-219 6-131 (214)
104 2atv_A RERG, RAS-like estrogen 99.3 4E-12 1.4E-16 121.6 9.7 118 34-218 27-147 (196)
105 3qq5_A Small GTP-binding prote 99.3 2.9E-12 1E-16 136.9 9.6 162 34-259 33-194 (423)
106 3llu_A RAS-related GTP-binding 99.3 4.6E-12 1.6E-16 121.3 9.8 120 34-218 19-144 (196)
107 1moz_A ARL1, ADP-ribosylation 99.3 2.3E-12 7.8E-17 121.4 7.6 114 34-218 17-134 (183)
108 3cpj_B GTP-binding protein YPT 99.3 1.1E-12 3.6E-17 128.5 5.1 119 34-218 12-133 (223)
109 3c5c_A RAS-like protein 12; GD 99.3 1.7E-12 5.9E-17 123.3 6.3 150 34-255 20-180 (187)
110 2b6h_A ADP-ribosylation factor 99.3 2.1E-12 7.1E-17 123.4 6.6 114 34-218 28-145 (192)
111 2h17_A ADP-ribosylation factor 99.3 2.1E-12 7.2E-17 121.9 6.3 115 33-218 19-137 (181)
112 2gf0_A GTP-binding protein DI- 99.3 3.2E-12 1.1E-16 122.1 7.6 153 34-253 7-163 (199)
113 2x77_A ADP-ribosylation factor 99.3 5.3E-12 1.8E-16 119.8 8.7 114 34-218 21-138 (189)
114 1fzq_A ADP-ribosylation factor 99.3 8.2E-12 2.8E-16 118.0 9.9 115 34-219 15-133 (181)
115 1mh1_A RAC1; GTP-binding, GTPa 99.3 1.6E-12 5.6E-17 122.5 5.0 117 35-218 5-124 (186)
116 2j1l_A RHO-related GTP-binding 99.3 3.9E-12 1.3E-16 123.7 7.8 116 35-218 34-153 (214)
117 3cbq_A GTP-binding protein REM 99.3 9.7E-12 3.3E-16 119.1 10.3 105 136-256 72-183 (195)
118 2q3h_A RAS homolog gene family 99.3 9E-12 3.1E-16 119.4 9.7 117 34-218 19-139 (201)
119 3reg_A RHO-like small GTPase; 99.3 1.1E-12 3.9E-17 125.1 3.2 154 34-255 22-182 (194)
120 3gj0_A GTP-binding nuclear pro 99.3 1.1E-12 3.9E-17 128.0 3.1 107 136-259 64-173 (221)
121 2gco_A H9, RHO-related GTP-bin 99.3 1.7E-12 5.8E-17 124.8 4.2 116 36-218 26-144 (201)
122 3t1o_A Gliding protein MGLA; G 99.3 4.1E-12 1.4E-16 120.9 6.7 103 136-256 74-187 (198)
123 2wjg_A FEOB, ferrous iron tran 99.3 3.3E-12 1.1E-16 120.9 6.0 120 34-218 6-127 (188)
124 1h65_A Chloroplast outer envel 99.3 1.5E-11 5E-16 124.3 11.0 126 34-219 38-170 (270)
125 2e87_A Hypothetical protein PH 99.3 4.2E-11 1.4E-15 126.0 14.8 126 34-218 166-295 (357)
126 3l0i_B RAS-related protein RAB 99.3 4.2E-13 1.4E-17 128.8 -0.6 119 34-218 32-153 (199)
127 2ged_A SR-beta, signal recogni 99.3 2.2E-11 7.4E-16 115.9 11.2 140 7-219 26-172 (193)
128 1f6b_A SAR1; gtpases, N-termin 99.2 9.7E-12 3.3E-16 119.4 8.4 113 34-217 24-140 (198)
129 3bwd_D RAC-like GTP-binding pr 99.2 1.2E-12 4.1E-17 123.1 1.9 118 34-218 7-127 (182)
130 1m2o_B GTP-binding protein SAR 99.2 1.3E-11 4.4E-16 117.7 8.7 113 34-217 22-138 (190)
131 3q3j_B RHO-related GTP-binding 99.2 4.9E-12 1.7E-16 123.1 5.9 118 34-218 26-146 (214)
132 3r7w_A Gtpase1, GTP-binding pr 99.2 1.7E-11 5.8E-16 126.2 10.2 121 36-217 4-129 (307)
133 2atx_A Small GTP binding prote 99.2 6.8E-12 2.3E-16 119.6 6.5 117 35-218 18-137 (194)
134 2g3y_A GTP-binding protein GEM 99.2 1.7E-11 6E-16 119.0 9.4 161 34-257 36-199 (211)
135 2fv8_A H6, RHO-related GTP-bin 99.2 6.2E-12 2.1E-16 121.4 6.2 116 36-218 26-144 (207)
136 1mky_A Probable GTP-binding pr 99.2 6E-11 2.1E-15 128.3 14.5 129 34-219 179-308 (439)
137 2iwr_A Centaurin gamma 1; ANK 99.2 1.8E-11 6.3E-16 114.7 9.1 26 35-60 7-32 (178)
138 3th5_A RAS-related C3 botulinu 98.9 9.1E-13 3.1E-17 126.9 0.0 118 34-218 29-149 (204)
139 2j0v_A RAC-like GTP-binding pr 99.2 5.5E-12 1.9E-16 122.1 5.2 118 34-218 8-128 (212)
140 3def_A T7I23.11 protein; chlor 99.2 7.6E-11 2.6E-15 118.4 13.3 125 34-218 35-166 (262)
141 1m7b_A RND3/RHOE small GTP-bin 99.2 8E-12 2.7E-16 118.2 5.3 117 34-218 6-126 (184)
142 4gzl_A RAS-related C3 botulinu 99.2 3E-12 1E-16 123.5 2.3 118 34-219 29-150 (204)
143 3o47_A ADP-ribosylation factor 99.2 1.6E-11 5.3E-16 127.7 7.4 112 37-219 167-282 (329)
144 1wxq_A GTP-binding protein; st 99.2 4E-12 1.4E-16 135.2 2.5 38 37-74 2-39 (397)
145 4a9a_A Ribosome-interacting GT 99.2 1.4E-11 4.8E-16 129.2 6.2 122 34-216 71-195 (376)
146 3ihw_A Centg3; RAS, centaurin, 99.2 3.2E-11 1.1E-15 114.2 8.1 147 34-257 19-176 (184)
147 1gwn_A RHO-related GTP-binding 99.2 1.4E-11 4.9E-16 119.0 5.7 118 34-218 27-147 (205)
148 3dpu_A RAB family protein; roc 99.1 6.8E-11 2.3E-15 131.2 10.2 109 135-258 97-205 (535)
149 1nrj_B SR-beta, signal recogni 99.1 9E-11 3.1E-15 114.0 9.6 115 34-219 11-136 (218)
150 2cjw_A GTP-binding protein GEM 99.1 2.9E-11 9.8E-16 115.5 5.4 70 136-217 56-128 (192)
151 3izy_P Translation initiation 99.1 3.7E-12 1.3E-16 139.7 -1.5 117 34-218 3-119 (537)
152 2zej_A Dardarin, leucine-rich 99.1 4.2E-11 1.4E-15 113.3 5.7 68 136-218 56-127 (184)
153 3lvq_E ARF-GAP with SH3 domain 99.1 1.1E-10 3.9E-15 128.2 9.1 113 35-218 322-438 (497)
154 1wb1_A Translation elongation 99.1 1.8E-10 6.1E-15 125.7 10.1 66 136-218 73-140 (482)
155 2qag_A Septin-2, protein NEDD5 99.1 5.5E-11 1.9E-15 125.1 5.2 82 136-219 95-190 (361)
156 3j2k_7 ERF3, eukaryotic polype 99.1 6.6E-10 2.2E-14 119.9 13.2 144 34-217 16-169 (439)
157 2wkq_A NPH1-1, RAS-related C3 99.1 6.8E-11 2.3E-15 122.5 5.1 117 34-218 154-274 (332)
158 3sjy_A Translation initiation 99.1 1.4E-10 4.7E-15 124.1 7.4 68 136-219 75-145 (403)
159 2f9l_A RAB11B, member RAS onco 99.1 1.7E-10 5.9E-15 110.5 7.1 118 35-218 5-125 (199)
160 3p26_A Elongation factor 1 alp 99.0 2.7E-10 9.1E-15 124.7 8.0 146 35-218 33-186 (483)
161 3izq_1 HBS1P, elongation facto 99.0 2.7E-10 9.2E-15 127.6 8.2 147 34-218 166-320 (611)
162 1s0u_A EIF-2-gamma, translatio 99.0 1.8E-09 6E-14 115.6 12.8 68 136-219 81-151 (408)
163 1kk1_A EIF2gamma; initiation o 99.0 1.8E-09 6.1E-14 115.6 12.8 67 136-218 83-152 (410)
164 2www_A Methylmalonic aciduria 99.0 6.6E-10 2.2E-14 116.3 8.8 25 34-58 73-97 (349)
165 2ywe_A GTP-binding protein LEP 99.0 5.1E-10 1.7E-14 124.3 7.8 134 34-218 5-140 (600)
166 3tr5_A RF-3, peptide chain rel 99.0 1.3E-09 4.6E-14 119.8 10.9 138 34-218 12-149 (528)
167 1pui_A ENGB, probable GTP-bind 99.0 1.9E-09 6.6E-14 103.8 10.3 78 137-219 73-153 (210)
168 1zo1_I IF2, translation initia 98.9 5E-11 1.7E-15 129.6 -1.8 114 34-218 3-118 (501)
169 3cb4_D GTP-binding protein LEP 98.9 4.9E-10 1.7E-14 124.7 5.9 134 34-218 3-138 (599)
170 1zun_B Sulfate adenylate trans 98.9 1.9E-09 6.3E-14 116.4 10.0 147 34-218 23-172 (434)
171 3p32_A Probable GTPase RV1496/ 98.9 5.8E-09 2E-13 109.4 13.4 25 34-58 78-102 (355)
172 1oix_A RAS-related protein RAB 98.9 2.5E-09 8.7E-14 101.7 9.7 119 34-218 28-149 (191)
173 1g7s_A Translation initiation 98.9 1.1E-09 3.7E-14 122.0 7.1 67 136-217 70-136 (594)
174 2elf_A Protein translation elo 98.9 2.3E-09 7.8E-14 112.9 8.3 62 136-215 60-125 (370)
175 2h5e_A Peptide chain release f 98.9 4.6E-09 1.6E-13 115.6 10.8 70 135-219 81-150 (529)
176 1udx_A The GTP-binding protein 98.9 2.3E-09 8E-14 114.1 7.2 161 35-257 157-321 (416)
177 2c78_A Elongation factor TU-A; 98.8 6.3E-09 2.2E-13 111.2 10.1 130 34-217 10-142 (405)
178 1f60_A Elongation factor EEF1A 98.8 3.9E-09 1.3E-13 114.5 8.5 143 34-217 6-159 (458)
179 1d2e_A Elongation factor TU (E 98.8 1.6E-08 5.6E-13 107.6 11.7 66 135-217 65-133 (397)
180 1jny_A EF-1-alpha, elongation 98.8 5.1E-09 1.7E-13 112.9 7.0 67 135-218 83-159 (435)
181 2qag_C Septin-7; cell cycle, c 98.8 2.9E-08 9.9E-13 105.8 11.8 81 136-218 88-182 (418)
182 2xex_A Elongation factor G; GT 98.8 6.5E-09 2.2E-13 118.3 7.1 69 135-218 74-142 (693)
183 3c5h_A Glucocorticoid receptor 98.8 6.5E-09 2.2E-13 103.8 6.2 26 33-58 17-51 (255)
184 3r7w_B Gtpase2, GTP-binding pr 98.7 1.8E-08 6.1E-13 103.2 9.0 116 37-218 1-121 (331)
185 2qag_B Septin-6, protein NEDD5 98.7 2.4E-08 8.2E-13 106.0 10.1 135 34-219 41-192 (427)
186 3avx_A Elongation factor TS, e 98.7 1.7E-08 5.9E-13 117.6 9.6 67 134-217 357-426 (1289)
187 1jal_A YCHF protein; nucleotid 98.7 4.2E-09 1.4E-13 109.8 4.1 37 36-72 3-39 (363)
188 2rdo_7 EF-G, elongation factor 98.7 4.3E-08 1.5E-12 111.6 11.8 136 34-218 9-149 (704)
189 3mca_A HBS1, elongation factor 98.7 1E-09 3.4E-14 122.6 -1.8 66 136-217 255-329 (592)
190 1r5b_A Eukaryotic peptide chai 98.7 2.1E-08 7.1E-13 109.0 8.2 66 135-217 120-195 (467)
191 2qnr_A Septin-2, protein NEDD5 98.7 2.1E-08 7.2E-13 102.6 7.3 123 136-261 76-214 (301)
192 2p67_A LAO/AO transport system 98.7 8.6E-08 3E-12 99.9 11.9 25 34-58 55-79 (341)
193 1dar_A EF-G, elongation factor 98.7 2.9E-08 9.8E-13 113.0 8.5 69 135-218 76-144 (691)
194 1n0u_A EF-2, elongation factor 98.6 2.2E-08 7.4E-13 116.3 6.9 68 135-217 97-164 (842)
195 2ohf_A Protein OLA1, GTP-bindi 98.6 3E-08 1E-12 104.3 6.6 107 34-184 21-127 (396)
196 3ec1_A YQEH GTPase; atnos1, at 98.6 1.2E-08 4E-13 107.5 2.1 23 36-58 163-185 (369)
197 2qm8_A GTPase/ATPase; G protei 98.6 3.3E-07 1.1E-11 95.1 12.5 25 34-58 54-78 (337)
198 1yrb_A ATP(GTP)binding protein 98.5 1.9E-07 6.5E-12 93.1 9.2 26 31-56 10-35 (262)
199 2dby_A GTP-binding protein; GD 98.5 7.7E-08 2.6E-12 100.8 6.3 40 36-75 2-41 (368)
200 3h2y_A GTPase family protein; 98.5 3.3E-08 1.1E-12 104.0 3.2 24 36-59 161-184 (368)
201 3sop_A Neuronal-specific septi 98.5 3.1E-07 1.1E-11 92.3 9.8 82 136-219 60-156 (270)
202 3vqt_A RF-3, peptide chain rel 98.5 9.9E-08 3.4E-12 105.5 6.7 138 34-218 30-167 (548)
203 2dy1_A Elongation factor G; tr 98.5 1.1E-07 3.9E-12 107.6 6.6 132 34-216 8-139 (665)
204 2j37_W Signal recognition part 98.4 3.8E-07 1.3E-11 99.2 9.1 78 136-225 184-262 (504)
205 4fn5_A EF-G 1, elongation fact 98.4 1.9E-07 6.4E-12 106.7 5.5 137 34-218 12-152 (709)
206 3dm5_A SRP54, signal recogniti 98.4 4E-06 1.4E-10 89.4 15.1 81 136-227 183-263 (443)
207 2wsm_A Hydrogenase expression/ 98.4 1E-06 3.5E-11 85.3 9.3 25 34-58 29-53 (221)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 3.2E-07 1.1E-11 96.8 5.9 41 34-74 19-60 (392)
209 3j25_A Tetracycline resistance 98.3 2.1E-07 7.3E-12 104.9 4.1 132 36-218 3-134 (638)
210 1tq4_A IIGP1, interferon-induc 98.3 4.5E-06 1.5E-10 88.6 12.2 121 34-216 68-188 (413)
211 1puj_A YLQF, conserved hypothe 98.2 2.1E-06 7.3E-11 86.7 7.3 27 34-60 119-145 (282)
212 3kl4_A SRP54, signal recogniti 98.2 4.6E-06 1.6E-10 88.9 9.8 84 135-227 179-262 (433)
213 1f5n_A Interferon-induced guan 98.1 5.5E-06 1.9E-10 91.6 9.8 27 34-60 37-63 (592)
214 2hf9_A Probable hydrogenase ni 98.0 4E-06 1.4E-10 81.4 5.7 27 34-60 37-63 (226)
215 2v3c_C SRP54, signal recogniti 98.0 1.8E-05 6.2E-10 84.6 11.0 78 135-225 180-260 (432)
216 3cnl_A YLQF, putative uncharac 97.9 9.3E-06 3.2E-10 81.1 5.3 25 36-60 100-124 (262)
217 1rj9_A FTSY, signal recognitio 97.8 3.6E-05 1.2E-09 78.5 8.9 87 136-227 185-271 (304)
218 2yhs_A FTSY, cell division pro 97.7 0.00026 8.9E-09 76.2 12.9 83 136-227 376-462 (503)
219 3e70_C DPA, signal recognition 97.6 0.00024 8.1E-09 73.1 11.5 81 136-227 212-292 (328)
220 1j8m_F SRP54, signal recogniti 97.6 0.00019 6.6E-09 72.8 10.6 82 136-227 181-263 (297)
221 2px0_A Flagellar biosynthesis 97.6 0.0005 1.7E-08 69.7 13.0 79 136-227 183-263 (296)
222 3q5d_A Atlastin-1; G protein, 97.6 1.8E-05 6.1E-10 84.7 1.7 25 34-58 66-90 (447)
223 2xxa_A Signal recognition part 97.6 8.6E-05 2.9E-09 79.4 7.0 78 136-226 184-263 (433)
224 1vma_A Cell division protein F 97.6 9.4E-05 3.2E-09 75.4 6.9 84 135-227 186-273 (306)
225 1zu4_A FTSY; GTPase, signal re 97.5 0.00095 3.2E-08 68.4 13.2 84 135-227 191-278 (320)
226 2ffh_A Protein (FFH); SRP54, s 97.3 0.00041 1.4E-08 73.7 7.8 79 136-226 181-260 (425)
227 2og2_A Putative signal recogni 97.1 0.0018 6.2E-08 67.2 10.7 86 137-227 242-327 (359)
228 3b9q_A Chloroplast SRP recepto 97.1 0.0016 5.3E-08 66.2 9.3 86 137-227 185-270 (302)
229 1ls1_A Signal recognition part 96.8 0.002 6.8E-08 65.2 7.8 81 136-227 181-261 (295)
230 1zcb_A G alpha I/13; GTP-bindi 96.4 0.003 1E-07 65.8 5.5 70 135-217 200-282 (362)
231 1cip_A Protein (guanine nucleo 96.3 0.00099 3.4E-08 69.2 1.4 70 135-217 192-274 (353)
232 4dzz_A Plasmid partitioning pr 96.2 0.013 4.5E-07 55.2 8.5 66 136-216 76-143 (206)
233 1u0l_A Probable GTPase ENGC; p 96.1 0.0024 8.3E-08 64.8 3.3 67 137-218 64-130 (301)
234 1t9h_A YLOQ, probable GTPase E 96.1 0.0019 6.6E-08 65.5 2.5 24 36-59 174-197 (307)
235 3ohm_A Guanine nucleotide-bind 95.9 0.005 1.7E-07 63.0 4.5 70 135-217 166-248 (327)
236 4fid_A G protein alpha subunit 95.9 0.0074 2.5E-07 62.0 5.8 71 134-217 159-242 (340)
237 4ido_A Atlastin-1; GTPase, GTP 95.4 0.011 3.8E-07 62.8 4.9 23 34-56 66-88 (457)
238 3ney_A 55 kDa erythrocyte memb 95.3 0.0068 2.3E-07 57.3 2.5 37 34-72 18-58 (197)
239 1ex7_A Guanylate kinase; subst 95.1 0.0079 2.7E-07 56.3 2.4 35 38-72 4-40 (186)
240 1azs_C GS-alpha; complex (lyas 95.0 0.012 4.3E-07 61.8 3.6 70 135-217 216-298 (402)
241 2yv5_A YJEQ protein; hydrolase 94.9 0.0083 2.8E-07 60.8 1.9 55 164-218 71-125 (302)
242 3tau_A Guanylate kinase, GMP k 94.7 0.016 5.6E-07 55.1 3.3 23 36-58 9-31 (208)
243 1kgd_A CASK, peripheral plasma 94.6 0.014 4.8E-07 54.1 2.5 23 36-58 6-28 (180)
244 3tif_A Uncharacterized ABC tra 94.5 0.018 6.1E-07 56.1 3.2 23 37-59 33-55 (235)
245 1lvg_A Guanylate kinase, GMP k 94.5 0.015 5.1E-07 54.9 2.5 23 36-58 5-27 (198)
246 2rcn_A Probable GTPase ENGC; Y 94.5 0.019 6.4E-07 59.5 3.4 23 37-59 217-239 (358)
247 1puj_A YLQF, conserved hypothe 94.5 0.038 1.3E-06 55.3 5.6 52 163-218 14-65 (282)
248 1ye8_A Protein THEP1, hypothet 94.4 0.018 6.2E-07 53.4 2.8 22 37-58 2-23 (178)
249 2pcj_A ABC transporter, lipopr 94.4 0.019 6.3E-07 55.5 2.9 23 37-59 32-54 (224)
250 4g1u_C Hemin import ATP-bindin 94.3 0.025 8.6E-07 56.1 3.9 22 37-58 39-60 (266)
251 1mv5_A LMRA, multidrug resista 94.3 0.027 9.1E-07 55.1 3.9 23 37-59 30-52 (243)
252 1sgw_A Putative ABC transporte 94.3 0.022 7.7E-07 54.5 3.2 22 37-58 37-58 (214)
253 1g6h_A High-affinity branched- 94.3 0.022 7.4E-07 56.3 3.2 23 37-59 35-57 (257)
254 2xtz_A Guanine nucleotide-bind 94.3 0.011 3.9E-07 61.2 1.2 70 135-217 182-264 (354)
255 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.021 7.1E-07 58.6 3.1 30 37-68 173-202 (330)
256 1zp6_A Hypothetical protein AT 94.2 0.022 7.4E-07 53.0 2.9 22 37-58 11-32 (191)
257 3gfo_A Cobalt import ATP-bindi 94.2 0.023 7.8E-07 56.7 3.2 22 37-58 36-57 (275)
258 1znw_A Guanylate kinase, GMP k 94.2 0.019 6.4E-07 54.5 2.5 22 37-58 22-43 (207)
259 2onk_A Molybdate/tungstate ABC 94.2 0.024 8.3E-07 55.3 3.2 24 36-59 25-48 (240)
260 2pze_A Cystic fibrosis transme 94.1 0.025 8.4E-07 54.8 3.2 22 37-58 36-57 (229)
261 1b0u_A Histidine permease; ABC 94.1 0.024 8.3E-07 56.1 3.2 23 37-59 34-56 (262)
262 2gza_A Type IV secretion syste 94.1 0.023 7.9E-07 59.0 3.2 30 37-68 177-206 (361)
263 2qor_A Guanylate kinase; phosp 94.1 0.017 5.9E-07 54.6 2.1 25 34-58 11-35 (204)
264 3tr0_A Guanylate kinase, GMP k 94.0 0.021 7.3E-07 53.7 2.5 22 37-58 9-30 (205)
265 1np6_A Molybdopterin-guanine d 94.0 0.025 8.6E-07 52.3 2.9 25 34-58 5-29 (174)
266 1u0l_A Probable GTPase ENGC; p 94.0 0.031 1.1E-06 56.5 3.7 24 36-59 170-193 (301)
267 1ji0_A ABC transporter; ATP bi 94.0 0.027 9.4E-07 54.9 3.2 23 37-59 34-56 (240)
268 1s96_A Guanylate kinase, GMP k 93.9 0.022 7.6E-07 54.7 2.5 23 36-58 17-39 (219)
269 2ff7_A Alpha-hemolysin translo 93.9 0.029 1E-06 55.0 3.4 23 37-59 37-59 (247)
270 3c8u_A Fructokinase; YP_612366 93.9 0.022 7.5E-07 54.1 2.4 23 36-58 23-45 (208)
271 2oap_1 GSPE-2, type II secreti 93.9 0.025 8.7E-07 61.5 3.1 31 37-69 262-292 (511)
272 1vpl_A ABC transporter, ATP-bi 93.9 0.029 9.9E-07 55.3 3.2 23 37-59 43-65 (256)
273 2olj_A Amino acid ABC transpor 93.9 0.029 1E-06 55.5 3.2 23 37-59 52-74 (263)
274 2nq2_C Hypothetical ABC transp 93.8 0.029 1E-06 55.2 3.2 31 37-69 33-63 (253)
275 3a00_A Guanylate kinase, GMP k 93.8 0.024 8.3E-07 52.7 2.4 22 37-58 3-24 (186)
276 1z6g_A Guanylate kinase; struc 93.7 0.025 8.6E-07 54.2 2.5 22 37-58 25-46 (218)
277 2ixe_A Antigen peptide transpo 93.7 0.033 1.1E-06 55.4 3.4 22 37-58 47-68 (271)
278 3end_A Light-independent proto 93.7 0.15 5.1E-06 51.4 8.2 23 34-56 40-62 (307)
279 2ihy_A ABC transporter, ATP-bi 93.7 0.035 1.2E-06 55.4 3.4 23 37-59 49-71 (279)
280 2yz2_A Putative ABC transporte 93.6 0.033 1.1E-06 55.2 3.2 23 37-59 35-57 (266)
281 2d2e_A SUFC protein; ABC-ATPas 93.5 0.034 1.2E-06 54.6 3.0 22 37-58 31-52 (250)
282 2cbz_A Multidrug resistance-as 93.4 0.037 1.3E-06 53.9 3.0 22 37-58 33-54 (237)
283 4gp7_A Metallophosphoesterase; 93.3 0.04 1.4E-06 50.5 3.0 21 37-57 11-31 (171)
284 3nh6_A ATP-binding cassette SU 93.3 0.029 1E-06 56.8 2.1 22 37-58 82-103 (306)
285 1kag_A SKI, shikimate kinase I 93.2 0.036 1.2E-06 50.5 2.5 23 36-58 5-27 (173)
286 2qi9_C Vitamin B12 import ATP- 93.1 0.044 1.5E-06 53.8 3.1 23 37-59 28-50 (249)
287 2zu0_C Probable ATP-dependent 93.1 0.044 1.5E-06 54.3 3.0 22 37-58 48-69 (267)
288 1htw_A HI0065; nucleotide-bind 93.0 0.04 1.4E-06 50.0 2.5 22 37-58 35-56 (158)
289 3l82_B F-box only protein 4; T 93.0 0.1 3.6E-06 49.4 5.3 95 159-255 112-217 (227)
290 2j41_A Guanylate kinase; GMP, 93.0 0.041 1.4E-06 51.7 2.6 23 36-58 7-29 (207)
291 3asz_A Uridine kinase; cytidin 93.0 0.036 1.2E-06 52.5 2.2 22 37-58 8-29 (211)
292 2eyu_A Twitching motility prot 92.9 0.04 1.4E-06 54.5 2.5 22 37-58 27-48 (261)
293 2f1r_A Molybdopterin-guanine d 92.9 0.022 7.6E-07 52.5 0.5 23 36-58 3-25 (171)
294 2ghi_A Transport protein; mult 92.9 0.052 1.8E-06 53.6 3.2 23 37-59 48-70 (260)
295 2v9p_A Replication protein E1; 92.8 0.044 1.5E-06 55.4 2.6 22 37-58 128-149 (305)
296 3lw7_A Adenylate kinase relate 92.8 0.058 2E-06 48.8 3.2 20 36-55 2-21 (179)
297 4eun_A Thermoresistant glucoki 92.7 0.046 1.6E-06 51.4 2.5 23 36-58 30-52 (200)
298 2bbw_A Adenylate kinase 4, AK4 92.7 0.062 2.1E-06 52.3 3.4 25 35-59 27-54 (246)
299 2bdt_A BH3686; alpha-beta prot 92.7 0.047 1.6E-06 50.7 2.5 21 37-57 4-24 (189)
300 3h2y_A GTPase family protein; 92.6 0.067 2.3E-06 55.7 3.8 56 160-219 57-112 (368)
301 1xjc_A MOBB protein homolog; s 92.5 0.061 2.1E-06 49.4 2.9 25 34-58 3-27 (169)
302 3ec2_A DNA replication protein 92.5 0.1 3.4E-06 48.0 4.4 41 9-58 21-61 (180)
303 3b85_A Phosphate starvation-in 92.4 0.044 1.5E-06 52.2 1.9 30 37-69 24-53 (208)
304 2yv5_A YJEQ protein; hydrolase 92.4 0.063 2.2E-06 54.2 3.1 22 36-58 166-187 (302)
305 3kb2_A SPBC2 prophage-derived 92.4 0.071 2.4E-06 48.3 3.2 23 36-58 2-24 (173)
306 1odf_A YGR205W, hypothetical 3 92.3 0.13 4.4E-06 51.6 5.3 24 35-58 31-54 (290)
307 3kjh_A CO dehydrogenase/acetyl 92.3 0.22 7.4E-06 48.1 6.9 63 135-214 131-194 (254)
308 1knq_A Gluconate kinase; ALFA/ 92.3 0.057 1.9E-06 49.4 2.4 23 36-58 9-31 (175)
309 2pjz_A Hypothetical protein ST 92.3 0.067 2.3E-06 52.9 3.1 26 37-64 32-57 (263)
310 1t9h_A YLOQ, probable GTPase E 92.2 0.074 2.5E-06 53.8 3.4 52 167-219 81-133 (307)
311 2i3b_A HCR-ntpase, human cance 92.2 0.06 2.1E-06 50.4 2.5 22 37-58 3-24 (189)
312 1z47_A CYSA, putative ABC-tran 92.2 0.071 2.4E-06 55.1 3.2 23 37-59 43-65 (355)
313 3aez_A Pantothenate kinase; tr 92.1 0.058 2E-06 54.8 2.5 22 37-58 92-113 (312)
314 1cke_A CK, MSSA, protein (cyti 92.0 0.069 2.4E-06 51.0 2.8 23 36-58 6-28 (227)
315 3tui_C Methionine import ATP-b 92.0 0.077 2.6E-06 55.0 3.2 23 37-59 56-78 (366)
316 3fvq_A Fe(3+) IONS import ATP- 92.0 0.07 2.4E-06 55.2 2.9 23 37-59 32-54 (359)
317 2it1_A 362AA long hypothetical 92.0 0.077 2.6E-06 55.0 3.2 23 37-59 31-53 (362)
318 2yyz_A Sugar ABC transporter, 92.0 0.077 2.6E-06 54.9 3.2 23 37-59 31-53 (359)
319 3kta_A Chromosome segregation 91.9 0.062 2.1E-06 49.5 2.2 25 34-58 25-49 (182)
320 3lnc_A Guanylate kinase, GMP k 91.9 0.05 1.7E-06 52.4 1.6 22 37-58 29-51 (231)
321 3rlf_A Maltose/maltodextrin im 91.9 0.081 2.8E-06 55.1 3.2 23 37-59 31-53 (381)
322 4a74_A DNA repair and recombin 91.8 0.093 3.2E-06 50.0 3.5 30 37-66 27-56 (231)
323 1g29_1 MALK, maltose transport 91.8 0.082 2.8E-06 55.0 3.2 23 37-59 31-53 (372)
324 3uie_A Adenylyl-sulfate kinase 91.8 0.069 2.4E-06 50.2 2.5 23 36-58 26-48 (200)
325 3jvv_A Twitching mobility prot 91.7 0.066 2.3E-06 55.4 2.4 22 37-58 125-146 (356)
326 2bbs_A Cystic fibrosis transme 91.7 0.075 2.6E-06 53.3 2.8 22 37-58 66-87 (290)
327 4f4c_A Multidrug resistance pr 91.7 1.2 4E-05 54.2 13.6 53 158-212 1221-1274(1321)
328 1v43_A Sugar-binding transport 91.6 0.088 3E-06 54.7 3.2 23 37-59 39-61 (372)
329 4b4t_L 26S protease subunit RP 91.5 0.97 3.3E-05 47.9 11.2 25 34-58 213-238 (437)
330 1ly1_A Polynucleotide kinase; 91.4 0.097 3.3E-06 47.7 3.0 21 37-57 4-24 (181)
331 3t61_A Gluconokinase; PSI-biol 91.4 0.082 2.8E-06 49.6 2.5 24 35-58 18-41 (202)
332 2jaq_A Deoxyguanosine kinase; 91.4 0.11 3.6E-06 48.6 3.3 22 37-58 2-23 (205)
333 4e22_A Cytidylate kinase; P-lo 91.3 0.1 3.5E-06 51.1 3.2 26 35-60 27-55 (252)
334 1jjv_A Dephospho-COA kinase; P 91.3 0.1 3.4E-06 49.1 3.0 21 37-57 4-24 (206)
335 2if2_A Dephospho-COA kinase; a 91.2 0.086 3E-06 49.5 2.4 21 37-57 3-23 (204)
336 2jeo_A Uridine-cytidine kinase 91.1 0.087 3E-06 51.3 2.5 22 37-58 27-48 (245)
337 2qt1_A Nicotinamide riboside k 91.0 0.11 3.6E-06 49.0 2.9 22 37-58 23-44 (207)
338 1p9r_A General secretion pathw 91.0 0.077 2.6E-06 56.2 2.0 22 37-58 169-190 (418)
339 1nij_A Hypothetical protein YJ 90.9 0.065 2.2E-06 54.5 1.4 26 34-59 3-28 (318)
340 1f2t_A RAD50 ABC-ATPase; DNA d 90.9 0.11 3.8E-06 46.5 2.7 23 34-56 22-44 (149)
341 3ec1_A YQEH GTPase; atnos1, at 90.8 0.096 3.3E-06 54.5 2.6 56 160-219 59-114 (369)
342 1qhx_A CPT, protein (chloramph 90.8 0.12 4.1E-06 47.1 3.0 23 36-58 4-26 (178)
343 2ga8_A Hypothetical 39.9 kDa p 90.8 0.24 8.3E-06 50.9 5.4 45 6-58 3-47 (359)
344 2ewv_A Twitching motility prot 90.7 0.094 3.2E-06 54.6 2.4 22 37-58 138-159 (372)
345 1lw7_A Transcriptional regulat 90.7 0.088 3E-06 54.7 2.1 23 36-58 171-193 (365)
346 3vaa_A Shikimate kinase, SK; s 90.7 0.12 4E-06 48.5 2.8 22 36-57 26-47 (199)
347 1nks_A Adenylate kinase; therm 90.6 0.11 3.9E-06 47.8 2.6 23 36-58 2-24 (194)
348 1oxx_K GLCV, glucose, ABC tran 90.5 0.071 2.4E-06 55.1 1.2 23 37-59 33-55 (353)
349 2kjq_A DNAA-related protein; s 90.5 0.089 3E-06 47.1 1.7 24 35-58 36-59 (149)
350 1sq5_A Pantothenate kinase; P- 90.4 0.099 3.4E-06 52.9 2.2 22 37-58 82-103 (308)
351 1kht_A Adenylate kinase; phosp 90.4 0.13 4.6E-06 47.3 3.0 22 36-57 4-25 (192)
352 3trf_A Shikimate kinase, SK; a 90.4 0.15 5.1E-06 46.9 3.2 23 35-57 5-27 (185)
353 1rz3_A Hypothetical protein rb 90.4 0.11 3.6E-06 49.0 2.2 23 36-58 23-45 (201)
354 2vp4_A Deoxynucleoside kinase; 90.3 0.12 4.1E-06 49.8 2.6 22 37-58 22-43 (230)
355 2ehv_A Hypothetical protein PH 90.3 0.12 4E-06 50.0 2.5 21 37-57 32-52 (251)
356 2iyv_A Shikimate kinase, SK; t 90.2 0.14 4.9E-06 47.0 2.9 22 36-57 3-24 (184)
357 1via_A Shikimate kinase; struc 90.1 0.15 5.2E-06 46.5 3.0 23 36-58 5-27 (175)
358 1y63_A LMAJ004144AAA protein; 90.0 0.17 5.7E-06 46.8 3.2 25 34-58 9-33 (184)
359 4b4t_K 26S protease regulatory 90.0 0.95 3.3E-05 47.8 9.4 25 34-58 204-229 (428)
360 3d31_A Sulfate/molybdate ABC t 90.0 0.1 3.5E-06 53.8 1.8 23 37-59 28-50 (348)
361 3cm0_A Adenylate kinase; ATP-b 89.8 0.16 5.5E-06 46.6 3.0 21 37-57 6-26 (186)
362 2rhm_A Putative kinase; P-loop 89.8 0.15 5E-06 47.2 2.6 22 36-57 6-27 (193)
363 4b4t_J 26S protease regulatory 89.8 1.3 4.4E-05 46.3 10.0 25 34-58 180-205 (405)
364 3iij_A Coilin-interacting nucl 89.7 0.18 6.2E-06 46.2 3.2 23 34-56 10-32 (180)
365 2c95_A Adenylate kinase 1; tra 89.6 0.19 6.4E-06 46.6 3.3 23 35-57 9-31 (196)
366 3qf7_A RAD50; ABC-ATPase, ATPa 89.6 0.15 5.2E-06 52.9 2.9 24 34-57 22-45 (365)
367 2npi_A Protein CLP1; CLP1-PCF1 89.6 0.13 4.3E-06 55.3 2.2 26 34-59 137-162 (460)
368 2plr_A DTMP kinase, probable t 89.5 0.17 5.9E-06 47.4 3.0 23 36-58 5-27 (213)
369 3gd7_A Fusion complex of cysti 89.5 0.16 5.5E-06 53.1 3.0 22 37-58 49-70 (390)
370 3tqc_A Pantothenate kinase; bi 89.4 0.15 5E-06 51.9 2.5 22 37-58 94-115 (321)
371 2v54_A DTMP kinase, thymidylat 89.4 0.2 6.8E-06 46.7 3.3 23 36-58 5-27 (204)
372 3fb4_A Adenylate kinase; psych 89.4 0.19 6.5E-06 47.5 3.1 21 37-57 2-22 (216)
373 1e6c_A Shikimate kinase; phosp 89.2 0.2 6.9E-06 45.3 3.1 22 36-57 3-24 (173)
374 4a82_A Cystic fibrosis transme 89.2 0.16 5.6E-06 56.1 2.8 22 37-58 369-390 (578)
375 3b5x_A Lipid A export ATP-bind 89.2 0.21 7E-06 55.4 3.7 22 37-58 371-392 (582)
376 3euj_A Chromosome partition pr 89.1 0.16 5.4E-06 54.6 2.6 23 36-58 30-52 (483)
377 3dl0_A Adenylate kinase; phosp 89.0 0.21 7.1E-06 47.3 3.1 21 37-57 2-22 (216)
378 4b4t_M 26S protease regulatory 89.0 1.3 4.4E-05 46.8 9.5 25 34-58 213-238 (434)
379 3b60_A Lipid A export ATP-bind 89.0 0.19 6.3E-06 55.7 3.1 22 37-58 371-392 (582)
380 2pez_A Bifunctional 3'-phospho 89.0 0.18 6.1E-06 46.2 2.5 23 36-58 6-28 (179)
381 2z0h_A DTMP kinase, thymidylat 88.9 0.2 6.9E-06 46.4 2.9 22 37-58 2-23 (197)
382 2yvu_A Probable adenylyl-sulfa 88.9 0.18 6.1E-06 46.5 2.5 24 35-58 13-36 (186)
383 3qf4_A ABC transporter, ATP-bi 88.9 0.18 6.3E-06 55.8 3.0 22 37-58 371-392 (587)
384 3fkq_A NTRC-like two-domain pr 88.8 6 0.00021 40.7 14.4 92 135-245 259-351 (373)
385 2x8a_A Nuclear valosin-contain 88.7 0.18 6E-06 50.1 2.5 21 38-58 47-67 (274)
386 2cdn_A Adenylate kinase; phosp 88.7 0.28 9.6E-06 45.8 3.8 24 34-57 18-42 (201)
387 2bwj_A Adenylate kinase 5; pho 88.7 0.22 7.5E-06 46.2 3.0 22 36-57 13-34 (199)
388 1tev_A UMP-CMP kinase; ploop, 88.6 0.22 7.6E-06 45.9 3.0 22 36-57 4-25 (196)
389 1gvn_B Zeta; postsegregational 88.6 0.47 1.6E-05 47.3 5.6 21 37-57 35-55 (287)
390 2oze_A ORF delta'; para, walke 88.6 0.87 3E-05 45.3 7.6 21 36-56 35-58 (298)
391 1ixz_A ATP-dependent metallopr 88.6 0.19 6.4E-06 49.0 2.5 21 38-58 52-72 (254)
392 3ozx_A RNAse L inhibitor; ATP 88.5 0.26 9.1E-06 53.8 3.9 23 37-59 296-318 (538)
393 2pbr_A DTMP kinase, thymidylat 88.5 0.22 7.7E-06 45.9 2.9 21 37-57 2-22 (195)
394 3qf4_B Uncharacterized ABC tra 88.4 0.19 6.4E-06 55.9 2.6 22 37-58 383-404 (598)
395 2pt5_A Shikimate kinase, SK; a 88.4 0.27 9.2E-06 44.3 3.3 21 37-57 2-22 (168)
396 2yl4_A ATP-binding cassette SU 88.3 0.18 6.2E-06 56.0 2.5 22 37-58 372-393 (595)
397 3j16_B RLI1P; ribosome recycli 88.3 0.31 1.1E-05 54.0 4.4 23 37-59 105-127 (608)
398 3a4m_A L-seryl-tRNA(SEC) kinas 88.3 0.23 7.8E-06 48.8 2.9 23 35-57 4-26 (260)
399 1zd8_A GTP:AMP phosphotransfer 88.2 0.24 8.2E-06 47.4 3.0 23 35-57 7-29 (227)
400 2wwf_A Thymidilate kinase, put 88.2 0.22 7.4E-06 46.8 2.6 23 35-57 10-32 (212)
401 2w0m_A SSO2452; RECA, SSPF, un 88.2 0.2 6.9E-06 47.6 2.5 22 37-58 25-46 (235)
402 1yqt_A RNAse L inhibitor; ATP- 88.1 0.31 1.1E-05 53.3 4.1 31 37-69 314-344 (538)
403 1nn5_A Similar to deoxythymidy 88.1 0.22 7.5E-06 46.8 2.6 22 36-57 10-31 (215)
404 1gtv_A TMK, thymidylate kinase 88.1 0.11 3.6E-06 49.1 0.3 22 37-58 2-23 (214)
405 4b4t_I 26S protease regulatory 88.0 1.8 6E-05 45.6 9.5 25 34-58 214-239 (437)
406 3thx_A DNA mismatch repair pro 87.9 1.5 5.3E-05 50.9 10.0 19 37-55 664-682 (934)
407 1aky_A Adenylate kinase; ATP:A 87.7 0.3 1E-05 46.4 3.3 22 36-57 5-26 (220)
408 1jbk_A CLPB protein; beta barr 87.7 0.61 2.1E-05 42.3 5.4 24 35-58 43-66 (195)
409 1cr0_A DNA primase/helicase; R 87.7 0.2 6.9E-06 50.1 2.2 22 37-58 37-58 (296)
410 3bk7_A ABC transporter ATP-bin 87.7 0.34 1.1E-05 53.8 4.1 30 37-68 384-413 (607)
411 1yqt_A RNAse L inhibitor; ATP- 87.7 0.27 9.1E-06 53.9 3.3 22 37-58 49-70 (538)
412 3nwj_A ATSK2; P loop, shikimat 87.6 0.23 7.9E-06 48.6 2.5 23 35-57 48-70 (250)
413 1qf9_A UMP/CMP kinase, protein 87.6 0.25 8.4E-06 45.5 2.6 22 36-57 7-28 (194)
414 3ake_A Cytidylate kinase; CMP 87.6 0.26 9E-06 46.0 2.8 22 36-57 3-24 (208)
415 2p5t_B PEZT; postsegregational 87.5 0.41 1.4E-05 46.7 4.2 23 36-58 33-55 (253)
416 1zak_A Adenylate kinase; ATP:A 87.5 0.26 8.8E-06 46.9 2.7 23 35-57 5-27 (222)
417 3qks_A DNA double-strand break 87.5 0.32 1.1E-05 45.8 3.3 24 34-57 22-45 (203)
418 1in4_A RUVB, holliday junction 87.4 0.25 8.7E-06 50.4 2.8 24 35-58 51-74 (334)
419 1ukz_A Uridylate kinase; trans 87.4 0.3 1E-05 45.6 3.1 23 35-57 15-37 (203)
420 3l2o_B F-box only protein 4; s 87.4 0.26 8.9E-06 49.0 2.7 96 160-257 198-304 (312)
421 4b4t_H 26S protease regulatory 87.4 1.9 6.5E-05 45.8 9.5 25 34-58 241-266 (467)
422 1e4v_A Adenylate kinase; trans 87.3 0.29 1E-05 46.2 2.9 21 37-57 2-22 (214)
423 1iy2_A ATP-dependent metallopr 87.1 0.25 8.7E-06 48.8 2.5 21 38-58 76-96 (278)
424 2ze6_A Isopentenyl transferase 87.1 0.26 9E-06 48.2 2.5 22 37-58 3-24 (253)
425 3tlx_A Adenylate kinase 2; str 87.0 0.69 2.4E-05 44.8 5.5 23 35-57 29-51 (243)
426 3ozx_A RNAse L inhibitor; ATP 87.0 0.29 1E-05 53.5 3.1 22 37-58 27-48 (538)
427 1vht_A Dephospho-COA kinase; s 87.0 0.31 1.1E-05 46.2 2.9 22 36-57 5-26 (218)
428 2vli_A Antibiotic resistance p 86.9 0.24 8.2E-06 45.3 2.0 22 36-57 6-27 (183)
429 1uf9_A TT1252 protein; P-loop, 86.8 0.3 1E-05 45.4 2.7 24 35-58 8-31 (203)
430 2xb4_A Adenylate kinase; ATP-b 86.6 0.36 1.2E-05 46.1 3.1 21 37-57 2-22 (223)
431 3bk7_A ABC transporter ATP-bin 86.6 0.33 1.1E-05 53.9 3.3 23 37-59 119-141 (607)
432 3exa_A TRNA delta(2)-isopenten 86.5 0.45 1.5E-05 48.0 3.9 38 35-72 3-50 (322)
433 1m7g_A Adenylylsulfate kinase; 86.5 0.3 1E-05 46.2 2.5 23 36-58 26-48 (211)
434 1svm_A Large T antigen; AAA+ f 86.4 0.28 9.7E-06 51.0 2.5 22 37-58 171-192 (377)
435 1zuh_A Shikimate kinase; alpha 86.3 0.38 1.3E-05 43.4 3.0 23 35-57 7-29 (168)
436 2cvh_A DNA repair and recombin 86.1 0.32 1.1E-05 45.8 2.5 21 37-57 22-42 (220)
437 1n0w_A DNA repair protein RAD5 85.7 0.34 1.2E-05 46.4 2.5 22 37-58 26-47 (243)
438 3be4_A Adenylate kinase; malar 85.7 0.41 1.4E-05 45.4 3.0 23 35-57 5-27 (217)
439 1ak2_A Adenylate kinase isoenz 85.6 0.45 1.5E-05 45.7 3.3 23 35-57 16-38 (233)
440 1qhl_A Protein (cell division 85.4 0.077 2.6E-06 51.2 -2.3 23 37-59 29-51 (227)
441 1sxj_E Activator 1 40 kDa subu 85.3 0.36 1.2E-05 49.4 2.5 25 34-58 35-59 (354)
442 4eaq_A DTMP kinase, thymidylat 85.2 0.43 1.5E-05 45.9 3.0 23 36-58 27-49 (229)
443 3qkt_A DNA double-strand break 85.1 0.39 1.3E-05 49.1 2.7 24 34-57 22-45 (339)
444 3k9g_A PF-32 protein; ssgcid, 85.0 3.7 0.00013 39.8 9.8 89 135-244 144-233 (267)
445 2rcn_A Probable GTPase ENGC; Y 85.0 0.47 1.6E-05 48.9 3.2 50 169-219 127-176 (358)
446 3a8t_A Adenylate isopentenyltr 84.9 0.67 2.3E-05 47.2 4.3 23 36-58 41-63 (339)
447 3sr0_A Adenylate kinase; phosp 84.7 0.51 1.7E-05 44.6 3.1 22 37-58 2-23 (206)
448 2grj_A Dephospho-COA kinase; T 84.6 0.49 1.7E-05 44.2 2.9 23 35-57 12-34 (192)
449 2obl_A ESCN; ATPase, hydrolase 84.5 0.4 1.4E-05 49.3 2.4 23 37-59 73-95 (347)
450 3umf_A Adenylate kinase; rossm 84.4 0.55 1.9E-05 44.8 3.2 24 35-58 29-52 (217)
451 3foz_A TRNA delta(2)-isopenten 84.4 0.5 1.7E-05 47.6 3.0 22 36-57 11-32 (316)
452 2o5v_A DNA replication and rep 84.3 0.4 1.4E-05 49.5 2.4 26 33-58 24-49 (359)
453 3j16_B RLI1P; ribosome recycli 84.2 0.48 1.7E-05 52.5 3.1 22 38-59 381-402 (608)
454 3r20_A Cytidylate kinase; stru 84.1 0.59 2E-05 45.1 3.3 22 36-57 10-31 (233)
455 2dhr_A FTSH; AAA+ protein, hex 84.0 0.84 2.9E-05 49.3 4.8 22 37-58 66-87 (499)
456 1w1w_A Structural maintenance 83.8 0.48 1.6E-05 50.2 2.8 24 36-59 27-50 (430)
457 2p65_A Hypothetical protein PF 83.7 0.95 3.2E-05 40.9 4.5 24 35-58 43-66 (187)
458 2w58_A DNAI, primosome compone 83.7 1.5 5.1E-05 40.7 5.9 23 36-58 55-77 (202)
459 1lv7_A FTSH; alpha/beta domain 83.7 0.47 1.6E-05 46.2 2.5 22 37-58 47-68 (257)
460 2dpy_A FLII, flagellum-specifi 83.6 0.44 1.5E-05 50.6 2.4 23 37-59 159-181 (438)
461 4f4c_A Multidrug resistance pr 83.6 0.49 1.7E-05 57.6 3.1 22 37-58 446-467 (1321)
462 3cnl_A YLQF, putative uncharac 83.6 0.32 1.1E-05 47.9 1.2 50 163-218 12-61 (262)
463 1e69_A Chromosome segregation 83.6 0.44 1.5E-05 48.4 2.3 25 34-58 23-47 (322)
464 1ltq_A Polynucleotide kinase; 83.5 0.55 1.9E-05 46.8 3.0 21 37-57 4-24 (301)
465 1d2n_A N-ethylmaleimide-sensit 83.4 1.1 3.8E-05 43.9 5.1 25 34-58 63-87 (272)
466 1sxj_C Activator 1 40 kDa subu 83.3 0.51 1.7E-05 48.1 2.7 25 34-58 45-69 (340)
467 3auy_A DNA double-strand break 83.3 0.51 1.7E-05 48.9 2.7 23 34-56 24-46 (371)
468 3thx_B DNA mismatch repair pro 83.3 1.2 4.2E-05 51.6 6.1 22 37-58 675-696 (918)
469 2chg_A Replication factor C sm 83.2 0.65 2.2E-05 43.2 3.2 24 35-58 38-61 (226)
470 1q3t_A Cytidylate kinase; nucl 83.1 0.54 1.9E-05 45.2 2.7 24 34-57 15-38 (236)
471 1uj2_A Uridine-cytidine kinase 83.1 0.59 2E-05 45.4 2.9 22 36-57 23-44 (252)
472 3g5u_A MCG1178, multidrug resi 83.0 0.56 1.9E-05 56.9 3.3 22 37-58 418-439 (1284)
473 3bos_A Putative DNA replicatio 83.0 0.67 2.3E-05 44.0 3.3 24 35-58 52-75 (242)
474 4aby_A DNA repair protein RECN 82.9 0.19 6.6E-06 52.8 -0.8 25 34-58 59-83 (415)
475 1fnn_A CDC6P, cell division co 82.8 0.58 2E-05 48.2 2.9 25 34-58 43-67 (389)
476 1nlf_A Regulatory protein REPA 82.7 0.48 1.7E-05 46.8 2.2 21 37-57 32-52 (279)
477 2f6r_A COA synthase, bifunctio 82.6 0.58 2E-05 46.5 2.7 20 37-56 77-96 (281)
478 2ce7_A Cell division protein F 82.1 1.1 3.8E-05 48.0 4.8 22 37-58 51-72 (476)
479 3h4m_A Proteasome-activating n 82.1 0.85 2.9E-05 44.9 3.7 24 35-58 51-74 (285)
480 1tue_A Replication protein E1; 82.0 0.63 2.2E-05 43.9 2.5 21 37-57 60-80 (212)
481 3n70_A Transport activator; si 81.7 1.8 6.3E-05 37.9 5.4 22 37-58 26-47 (145)
482 2ius_A DNA translocase FTSK; n 81.3 0.72 2.4E-05 49.9 3.0 24 34-57 166-189 (512)
483 1p5z_B DCK, deoxycytidine kina 81.3 0.69 2.3E-05 45.3 2.6 25 34-58 23-47 (263)
484 1wb9_A DNA mismatch repair pro 81.1 2.4 8.2E-05 48.5 7.4 23 37-59 609-631 (800)
485 2iw3_A Elongation factor 3A; a 80.8 0.5 1.7E-05 55.0 1.6 23 37-59 701-723 (986)
486 2ph1_A Nucleotide-binding prot 80.8 4.4 0.00015 39.3 8.4 66 135-215 128-194 (262)
487 2qmh_A HPR kinase/phosphorylas 80.4 0.91 3.1E-05 42.6 2.9 24 35-58 34-57 (205)
488 3co5_A Putative two-component 80.0 1.6 5.6E-05 38.1 4.5 22 37-58 29-50 (143)
489 3cr8_A Sulfate adenylyltranfer 79.9 0.46 1.6E-05 52.0 0.9 22 37-58 371-392 (552)
490 1njg_A DNA polymerase III subu 79.7 1 3.5E-05 42.4 3.2 23 36-58 46-68 (250)
491 3zvl_A Bifunctional polynucleo 79.6 0.89 3.1E-05 47.9 3.0 23 36-58 259-281 (416)
492 3t15_A Ribulose bisphosphate c 79.5 0.97 3.3E-05 45.1 3.1 26 33-58 33-59 (293)
493 3cf2_A TER ATPase, transitiona 79.4 3.4 0.00011 47.2 7.8 26 33-58 235-261 (806)
494 3d3q_A TRNA delta(2)-isopenten 79.4 0.92 3.1E-05 46.3 2.9 23 36-58 8-30 (340)
495 3pfi_A Holliday junction ATP-d 78.9 1.9 6.5E-05 43.6 5.1 25 34-58 54-78 (338)
496 3cf0_A Transitional endoplasmi 78.7 1.4 4.8E-05 44.0 4.0 22 37-58 51-72 (301)
497 2qby_A CDC6 homolog 1, cell di 78.4 1.2 4E-05 45.6 3.4 24 35-58 45-68 (386)
498 1a5t_A Delta prime, HOLB; zinc 78.4 41 0.0014 33.6 15.1 25 34-58 22-47 (334)
499 2ocp_A DGK, deoxyguanosine kin 78.3 1 3.4E-05 43.4 2.7 22 37-58 4-25 (241)
500 3bfv_A CAPA1, CAPB2, membrane 78.2 1.9 6.5E-05 42.4 4.7 65 136-216 192-257 (271)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.1e-96 Score=831.48 Aligned_cols=609 Identities=37% Similarity=0.619 Sum_probs=523.7
Q ss_pred cchhHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCC
Q 006958 3 TMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG 82 (624)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 82 (624)
+|+.||+++|+|||.+..+|... .+++|+|+|||.+|||||||+|+|+|.+|||+|.++|||+|+++++.+.+
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~------~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~- 97 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST- 97 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCG------GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS-
T ss_pred cHHHHHHHHHHHHHHHHhcCccc------cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC-
Confidence 59999999999999999999642 26899999999999999999999999999999999999999999998765
Q ss_pred CCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHH
Q 006958 83 GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI 162 (624)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i 162 (624)
.+|+++.+.++..+.+++++..+|+..++...|.+.+||.+++.++|++|+.++++||||||+...+..++|+++...+
T Consensus 98 -~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i 176 (772)
T 3zvr_A 98 -TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQI 176 (772)
T ss_dssp -SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHH
T ss_pred -cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999988888999889999
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEe
Q 006958 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVN 242 (624)
Q Consensus 163 ~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 242 (624)
..++..|+.....+||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.+...++++||..|++
T Consensus 177 ~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~ 256 (772)
T 3zvr_A 177 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 256 (772)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCC
T ss_pred HHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEE
Confidence 99999999866567888899999999999878999999999999999999999988776667777666777889999999
Q ss_pred CChhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 006958 243 RSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGR 322 (624)
Q Consensus 243 ~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~ 322 (624)
+|+.+.....++.++...|..||.++++|..+.++.|+..|++.|++.|++|++++||+++.+|+.++..++.+++++|.
T Consensus 257 iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 257 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp CCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 99987666667777777888999999999888899999999999999999999999999999999999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCC--------CCCchhHhHhhhhhHHHhccCCcccCCchhhHHHHhHhcc
Q 006958 323 PIGVDSGAQLYTILEMCRAFERVFKEHLDGGR--------AGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEAD 394 (624)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~--------~~g~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~~~ 394 (624)
+++.++..+..+|++++++|++.|.++++|.+ .||+||+++|++.|+..+.++++++.+++++|+++|+|++
T Consensus 337 ~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~ 416 (772)
T 3zvr_A 337 FRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIH 416 (772)
T ss_dssp HCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCC
Confidence 88877777777899999999999999999998 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006958 395 GYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRK 474 (624)
Q Consensus 395 G~~p~~f~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~~a~~ 474 (624)
|++|++|+|+.+|+.||++||++|++||++||+.|+++|.+++++|. .+|.|||+|++++.+++.+.|++++.+|++
T Consensus 417 G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~ 493 (772)
T 3zvr_A 417 DIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREGRTKE 493 (772)
T ss_dssp ------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999884 479999999999999999999999999999
Q ss_pred HHHHHHHHhccccCHH---Hhhhhh------c---------c-----cccc------------cc--------------C
Q 006958 475 TVLRLVDMESSYLTVE---FFRKLS------E---------Q-----PERS------------AS--------------D 505 (624)
Q Consensus 475 ~i~~li~~E~~yint~---~~~~~~------~---------~-----~~~~------------~~--------------~ 505 (624)
+|.+|++||++||||+ |.+... + + +.++ ++ .
T Consensus 494 ~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (772)
T 3zvr_A 494 QVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWY 573 (772)
T ss_dssp HHHHHHHHHHTCCCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEEEE
T ss_pred HHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeeccccccccc
Confidence 9999999999999995 433110 0 0 0000 00 0
Q ss_pred CC---C--------------------------------CCCCCC-CC-----------------------CCCCCCC---
Q 006958 506 KN---A--------------------------------SDKNAP-DR-----------------------NAPPPGP--- 523 (624)
Q Consensus 506 ~~---~--------------------------------~~~~~~-~~-----------------------~~~~~~~--- 523 (624)
++ . ..++.. +. +--|...
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (772)
T 3zvr_A 574 KDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDK 653 (772)
T ss_dssp SSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC-----
T ss_pred cchhhhcccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCcccccc
Confidence 00 0 000000 00 0000000
Q ss_pred ------------CC---CCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 006958 524 ------------QN---PERFSDYHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEERLG 588 (624)
Q Consensus 524 ------------~~---~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPkaI~~~lV~~~~~~L~~~L~~~L~~~~~~~~ 588 (624)
.. .++....+++.|+.+|+|||.||+|++.|+|||+|||||||.+++.++.+|+.+||.. +.+.
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~-~~~~ 732 (772)
T 3zvr_A 654 EKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSC-GDQN 732 (772)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHT-CCTT
T ss_pred ccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCHH
Confidence 00 0111122578899999999999999999999999999999999999999999999985 6889
Q ss_pred hhhCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 006958 589 KMLDEDPQLMDRRATLAKRLELYKSARDEIDAVAW 623 (624)
Q Consensus 589 ~ll~E~~~i~~kR~~l~~~l~~L~~A~~~l~~~~~ 623 (624)
+||+|++++++||++|.+++++|++|..+|.++++
T Consensus 733 ~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~ 767 (772)
T 3zvr_A 733 TLMEESAEQAQRRDEMLRMYHALKEALSIIGDINT 767 (772)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999875
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=3.3e-85 Score=736.48 Aligned_cols=565 Identities=27% Similarity=0.410 Sum_probs=481.8
Q ss_pred HHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccC-
Q 006958 14 IQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHA- 92 (624)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~- 92 (624)
+.|.+..+|... .+++|+|+|||++|||||||+++|+|. ++|+++|.||++|..+.+.+......|....+-
T Consensus 30 ~id~l~~~gv~~------~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v 102 (608)
T 3szr_A 30 LIDSLRALGVEQ------DLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ 102 (608)
T ss_dssp HHHHHHHHSCCS------SCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC
T ss_pred HHHHHHhCCCCC------cccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeee
Confidence 345556666532 268999999999999999999999998 579999999999999988776655555543331
Q ss_pred -CCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc
Q 006958 93 -PRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE 171 (624)
Q Consensus 93 -~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~ 171 (624)
....+.++..+.+.+........+.+.+++.+.+.+.+.+++.++++|+|+||+...+..+++.+....+.+++..|+.
T Consensus 103 ~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~ 182 (608)
T 3szr_A 103 DYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ 182 (608)
T ss_dssp ---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT
T ss_pred cccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh
Confidence 1234667888888888877777777889999999999999999999999999999998989999999999999999999
Q ss_pred CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcccc--HHHHHhCcccccCCCeeEEEeCChhhhc
Q 006958 172 KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTN--ALEVLEGRSYRLQHPWVGIVNRSQADIN 249 (624)
Q Consensus 172 ~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (624)
++.++++++++++.|.++++++++++.+++.|.|||+|+||+|+++.++. +.+++.|+.+++++||++|+|+|++++.
T Consensus 183 ~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~~ 262 (608)
T 3szr_A 183 RQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQ 262 (608)
T ss_dssp SSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCTT
T ss_pred cCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhcc
Confidence 99889999999999999999999999999999999999999999988763 5788888899999999999999999999
Q ss_pred cCCcHHHHHHHHHhHhccCCCCCcccc--ccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 006958 250 KNVDMIAARRKEREYFETSPEYGHLAS--KMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVD 327 (624)
Q Consensus 250 ~~~~~~~~~~~e~~~f~~~~~~~~~~~--~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~ 327 (624)
...+..++...|..||.+++||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+.+++.+|..||++++.+
T Consensus 263 ~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~ 342 (608)
T 3szr_A 263 DQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPED 342 (608)
T ss_dssp TCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCS
T ss_pred cCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999987753 899999999999999999999999999999999999999999999998888
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCC---chhHhHhhhhhHHHhccCCc----ccCCchhhHHHHhHhccCCCCCC
Q 006958 328 SGAQLYTILEMCRAFERVFKEHLDGGRAGG---DRIYGVFDHQLPAALKKLPF----DRHLSTRNVQKVVSEADGYQPHL 400 (624)
Q Consensus 328 ~~~~~~~l~~~~~~f~~~~~~~i~G~~~~g---~ri~~~f~~~f~~~~~~~~~----~~~~~~~~i~~~i~~~~G~~p~~ 400 (624)
..+++.+|++++++|++.+.++++|.+..+ .+++..+++.|..+...+.. ......++|++.+++++|.+++.
T Consensus 343 ~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~ 422 (608)
T 3szr_A 343 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPG 422 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCC
Confidence 888888999999999999999999997543 57888887777776654321 11234678999999999999999
Q ss_pred CCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006958 401 IAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLV 480 (624)
Q Consensus 401 f~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li 480 (624)
|+|+.+|+.+|++||++|++||.+|++.|++++..++.++.. .+|.|||+|++++.+++.++++++.++|+++|+++|
T Consensus 423 f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li 500 (608)
T 3szr_A 423 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 500 (608)
T ss_dssp SSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987664 589999999999999999999999999999999999
Q ss_pred HHhccccCHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006958 481 DMESSYLTVEFFRKLSEQPERSASDKNASDKNAPDRNAPPPGPQNPERFSDYHFRRIGSNVSGYIGMVCDTLKNSIPKAV 560 (624)
Q Consensus 481 ~~E~~yint~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPkaI 560 (624)
+||+.||+.|.... . ....+.+|+.+|+|||+||+||++|+|||+|
T Consensus 501 ~mE~~~~~~d~~~~--~--------------------------------~~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I 546 (608)
T 3szr_A 501 QMEQIVYGAFQSSS--A--------------------------------TDSSMEEIFQHLMAYHQEASKRISSHIPLII 546 (608)
T ss_dssp HHHHHCCCC-------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccccCCcccc--C--------------------------------CCccHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999887653211 0 0011246999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006958 561 VYCQVLAAKRSLLNQFYAHVGRQEERLGKMLDEDPQLMDRRATLAKRLELYKSARDEIDAVA 622 (624)
Q Consensus 561 ~~~lV~~~~~~L~~~L~~~L~~~~~~~~~ll~E~~~i~~kR~~l~~~l~~L~~A~~~l~~~~ 622 (624)
|||||+.+++.||.+|++.||++ +.+++||+|||+|++||+.|++++++|++|+++|++|.
T Consensus 547 ~~~lv~~~~~~lq~~l~~~l~~~-~~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 547 QFFMLQTYGQQLQKAMLQLLQDK-DTYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HHHTTHHHHHHHHHHHHTTTTCH-HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-hhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999985 78999999999999999999999999999999999884
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=1.4e-50 Score=429.42 Aligned_cols=328 Identities=75% Similarity=1.175 Sum_probs=291.1
Q ss_pred chhHHHHHHHHHHHHHHhccCCC--CCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCC
Q 006958 4 MTSLIGLINKIQRACTVLGDHGG--EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTE 81 (624)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~--~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~ 81 (624)
||.|||++|+||++++.+|..+. .++.....+|+|+|||++|||||||+|+|+|.+|+|++.++|||+|+++++.+++
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 89999999999999999996432 4555667999999999999999999999999999999999999999999998876
Q ss_pred CC-CcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHH
Q 006958 82 GG-TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (624)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~ 160 (624)
.. ..|+.+.+.++..+.+|+.+..++..++....|.+.+|+.+++.+++.+|+.++++||||||+.+....+|+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 65 77889999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEE
Q 006958 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGI 240 (624)
Q Consensus 161 ~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (624)
.+..++..|++++|+|||+|++++.+..+++++.+++.+++.+.|+|+|+||+|+++++....+.+.+....+++||+.|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999999988888999999999999999999999999999887777888888888899999999
Q ss_pred EeCChhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 006958 241 VNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRI 320 (624)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 320 (624)
+++|+++++...+...+...|..||.++++|+.+..++|+..|+++|+++|.+||+++||.++.+|+..+.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhH
Q 006958 321 GRPIGVDSGAQ 331 (624)
Q Consensus 321 g~~~~~~~~~~ 331 (624)
|++++++..++
T Consensus 321 g~~~~~~~~~~ 331 (360)
T 3t34_A 321 GKPIAHGTDSR 331 (360)
T ss_dssp -----------
T ss_pred CCCCCCCHHHH
Confidence 99988766544
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=1.5e-47 Score=404.81 Aligned_cols=339 Identities=51% Similarity=0.810 Sum_probs=307.9
Q ss_pred cchhHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCC
Q 006958 3 TMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG 82 (624)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 82 (624)
+|+.|++++|+|||.+..+|... .+++|+|+|||+||||||||+|+|+|.+|+|++.++||++|+++++.+.+
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~------~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~- 77 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT- 77 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGG------GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS-
T ss_pred hHHHHHHHHHHHHHHHHHcCCCC------CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC-
Confidence 59999999999999999988632 25899999999999999999999999999999999999999999987764
Q ss_pred CCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHH
Q 006958 83 GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI 162 (624)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i 162 (624)
.+|+++.+.++..+++++.+..++++++.++.|.+.+++...+.+++++|+..+++||||||+.+.+..+|++++.+.+
T Consensus 78 -~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~ 156 (353)
T 2x2e_A 78 -TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQI 156 (353)
T ss_dssp -SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHH
T ss_pred -ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHH
Confidence 5899999999999999999999999999899888899999999999999999999999999999988888899888999
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEe
Q 006958 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVN 242 (624)
Q Consensus 163 ~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 242 (624)
.+++..|+.+++++||+|++++.++.++++..+++.+++.+.|+++|+||+|+++++.++.+++.+...++++||..+++
T Consensus 157 ~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~ 236 (353)
T 2x2e_A 157 RDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 236 (353)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCC
T ss_pred HHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEe
Confidence 99999999999999999999999999999888999999999999999999999987766677777777788889999999
Q ss_pred CChhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 006958 243 RSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGR 322 (624)
Q Consensus 243 ~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~ 322 (624)
+|+.+.....+.......|.+||.+++.|+....++|+..|++.|++.|.+|++++||++..+++..+..++.+++.+|.
T Consensus 237 ~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~ 316 (353)
T 2x2e_A 237 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKN 316 (353)
T ss_dssp CCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99988766677777778899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCchhH--HHHHHHHHHHHHHHHHHh
Q 006958 323 PIGVDSGAQ--LYTILEMCRAFERVFKEH 349 (624)
Q Consensus 323 ~~~~~~~~~--~~~l~~~~~~f~~~~~~~ 349 (624)
.++.+...+ +.++++++++|++.|...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 317 FRPDKHGTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp HCCCSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 776665443 378999999999988654
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=3.8e-40 Score=342.75 Aligned_cols=309 Identities=51% Similarity=0.822 Sum_probs=243.9
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCC---
Q 006958 5 TSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTE--- 81 (624)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~--- 81 (624)
|.||+++|+||+++..+|... .++|+|+|+|.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~-------~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~ 73 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSDP-------LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIAD 73 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSCT-------TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCT
T ss_pred CchHHHHHHHHHHHHHcCCCC-------CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcc
Confidence 579999999999999888642 5899999999999999999999999999999999999999999887753
Q ss_pred ---CCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccH
Q 006958 82 ---GGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESI 158 (624)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~ 158 (624)
....|+++.+.++..+.++.++.+++.+.+.++.|.+.+++.+++.+++.+|+..+++||||||+.+.+..++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~ 153 (315)
T 1jwy_B 74 DGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDI 153 (315)
T ss_dssp TSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CS
T ss_pred cccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhH
Confidence 24789999999999999999999999999888888888999999999999999999999999999876666667778
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCee
Q 006958 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWV 238 (624)
Q Consensus 159 ~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 238 (624)
.+.+..++..|++.+|++|+++.+++.++...+...+++.+++.+.|+++|+||+|+.+......+.+.+....++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 233 (315)
T 1jwy_B 154 EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFI 233 (315)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeE
Confidence 88899999999999999888888777777766666788889888999999999999997765556777655556668999
Q ss_pred EEEeCChhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006958 239 GIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELD 318 (624)
Q Consensus 239 ~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~~~~~eL~ 318 (624)
.++++|+.+++.+.........+..||..+++|..+..+.|+..|...+++.+.+++++++|++...++..+.+++++|.
T Consensus 234 ~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~ 313 (315)
T 1jwy_B 234 GVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELS 313 (315)
T ss_dssp ECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred EEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999887777776766777889988888887778999999999999999999999999999999999999999997
Q ss_pred Hh
Q 006958 319 RI 320 (624)
Q Consensus 319 ~l 320 (624)
+|
T Consensus 314 ~~ 315 (315)
T 1jwy_B 314 TY 315 (315)
T ss_dssp --
T ss_pred hC
Confidence 65
No 6
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.9e-40 Score=324.68 Aligned_cols=260 Identities=11% Similarity=0.169 Sum_probs=191.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCC---CCchhHhHhhhhhHHHhccCCcccCCc----hhhHHHHhHhccCCCCCC
Q 006958 328 SGAQLYTILEMCRAFERVFKEHLDGGRA---GGDRIYGVFDHQLPAALKKLPFDRHLS----TRNVQKVVSEADGYQPHL 400 (624)
Q Consensus 328 ~~~~~~~l~~~~~~f~~~~~~~i~G~~~---~g~ri~~~f~~~f~~~~~~~~~~~~~~----~~~i~~~i~~~~G~~p~~ 400 (624)
+.+++.||++.++.|++.+.+++.|.+. |+.|++..++..|.+|...++...... .++|.+..++++|.+++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 4567889999999999999999999863 567999999999999987654221111 256777778999999999
Q ss_pred CCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006958 401 IAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLV 480 (624)
Q Consensus 401 f~pe~af~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li 480 (624)
|+|+.+|+.||++||++|++||++|++.|++++.+++.++.. .+|.|||+|++.+.+++.+++.+|..+|+++|+++|
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~ 160 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 160 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765 599999999999999999999999999999999999
Q ss_pred HHhccccCHH-HhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006958 481 DMESSYLTVE-FFRKLSEQPERSASDKNASDKNAPDRNAPPPGPQNPERFSD-YHFRRIGSNVSGYIGMVCDTLKNSIPK 558 (624)
Q Consensus 481 ~~E~~yint~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~v~aYf~iv~k~i~D~VPk 558 (624)
+||+.+||+| .|....+.+......+. +... ..+.+.... .... +.+.+|+.||.|||+||++|++|+|||
T Consensus 161 ~mE~~vytqD~~Y~~~l~~~r~~~~~~~---~~~~--~~~~~~~~~--~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~ 233 (271)
T 3ljb_A 161 QMEQIVYCQDQVYRGALQKVREKELEEE---KKKK--SWDFGAFQS--SSATDSSMEEIFQHLMAYHQEASKRISSHIPL 233 (271)
T ss_dssp HHHTSCC-----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccCCHHHHHHHHHHHHHHhccc---cccc--ccccccccC--CCCccchHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 9999777664 44433222221100000 0000 000000001 1123 467899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhCCChHH
Q 006958 559 AVVYCQVLAAKRSLLNQFYAHVGRQEERLGKMLDEDPQL 597 (624)
Q Consensus 559 aI~~~lV~~~~~~L~~~L~~~L~~~~~~~~~ll~E~~~i 597 (624)
+|+||||+.+++.||.+|++.||++ +.+++||+|++++
T Consensus 234 ~I~~~ll~~~~~~lQ~~ml~~l~~~-~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 234 IIQFFMLQTYGQQLQKAMLQLLQDK-DTYSWLLKERSDT 271 (271)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTSCG-GGHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhch-hhHHHHhcCCCCC
Confidence 9999999999999999999999996 7999999999985
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=5.1e-38 Score=324.08 Aligned_cols=298 Identities=56% Similarity=0.898 Sum_probs=262.4
Q ss_pred chhHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCC
Q 006958 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG 83 (624)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~ 83 (624)
|+.|++++++|++.+..+|... ..++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+.+++.+..
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~------~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~-- 72 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST-- 72 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCT------TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--
T ss_pred CHHHHHHHHHHHHHHHhcCCCC------CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC--
Confidence 7999999999999999988532 15799999999999999999999999999999999999999999987764
Q ss_pred CcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHH
Q 006958 84 TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE 163 (624)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~ 163 (624)
.+|+++.+..+..+++++.+...++..+..+.|.+.+++...+.+++++|+..+++||||||+......++++++...+.
T Consensus 73 ~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~ 152 (299)
T 2aka_B 73 TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR 152 (299)
T ss_dssp SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHH
T ss_pred cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHH
Confidence 57889998889899999999999988888888888899999999999999889999999999998776666777788899
Q ss_pred HHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeC
Q 006958 164 NMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243 (624)
Q Consensus 164 ~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (624)
.++..|++.++++||+|++++.++..++...+++.+++.+.|+++|+||+|+.+.+....+.+++....++.||..++++
T Consensus 153 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 232 (299)
T 2aka_B 153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 232 (299)
T ss_dssp HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECC
Confidence 99999999999998888899888888887778999999999999999999998776555666766555666789999999
Q ss_pred ChhhhccCCcHHHHHHHHHhHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006958 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKN 309 (624)
Q Consensus 244 s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~ 309 (624)
|+.+.....+.......|.+||+..+.|.....++|+..|.+.|++.+..|+++++|++..+++.+
T Consensus 233 SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 987655555666777778999998888999889999999999999999999999999999998865
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=2.3e-17 Score=187.94 Aligned_cols=173 Identities=18% Similarity=0.258 Sum_probs=111.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHH---HHH
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEI---SDE 110 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i---~~~ 110 (624)
+.+.|+|+|.+|+|||||+|+|+|.+++|++..+||++|+.+... +.......+.........++..+...+ .+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g--~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYG--PEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEEC--SSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeC--CCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 457899999999999999999999999999999999999998742 211111111111110111222221110 001
Q ss_pred HhhhhCCCCCcccccEEEEEecCCC---CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006958 111 TDRITGKSKQISNIPIQLSIYSPNV---VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (624)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~ 187 (624)
.....+.+.+.......++++.|.. .+++||||||+..... ...++..|++++|++++ |++++...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~vL~-Vvda~~~~ 214 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHAILF-VMRASQPC 214 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSEEEE-EEETTSTT
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCEEEE-EEeCCCcc
Confidence 1112222334445666677777753 4799999999876432 25678899999997655 55666666
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 188 ~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
...+...+.+.+...+.|+++|+||+|+....
T Consensus 215 s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 215 TLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp CHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred chhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 55555434456666788999999999997653
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.75 E-value=4e-18 Score=175.97 Aligned_cols=218 Identities=18% Similarity=0.258 Sum_probs=131.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+++|.+|||||||+|+|+|.++ .+++..|. +
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~-----~i~s~~~~------t--------------------------------- 44 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKV-----SIISPKAG------T--------------------------------- 44 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSC------C---------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc-----cccCCCCC------c---------------------------------
Confidence 566899999999999999999999987 33333330 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+...+.-........+++||||||+.+... ...+.+.+...+..|+..+|++++++ +++......+..
T Consensus 45 --------T~~~~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~Vv-D~~~~~~~~~~~ 112 (308)
T 3iev_A 45 --------TRMRVLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMI-DATEGWRPRDEE 112 (308)
T ss_dssp --------CCSCEEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEE-ETTTBSCHHHHH
T ss_pred --------eeeEEEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEE-eCCCCCCchhHH
Confidence 001111111122146799999999986441 13467778888999999999877655 555444444433
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCccccc--CCCeeEEEeCChhhhccCCcHHHHHHHHHhHhccCCCC
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRL--QHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEY 271 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l--~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~ 271 (624)
.+...+...+.|+++|+||+|+.+......+.+..-...+ ...++.+++.++.++++++..+.....+.+++......
T Consensus 113 ~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~ 192 (308)
T 3iev_A 113 IYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMI 192 (308)
T ss_dssp HHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCC
T ss_pred HHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccc
Confidence 2256666567899999999999843333222222111111 13455555555555555554444433332222222212
Q ss_pred CccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006958 272 GHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNI 310 (624)
Q Consensus 272 ~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l 310 (624)
++ .--.....+.+++.+.+++.+++|+-.+...+.+
T Consensus 193 td---~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~ 228 (308)
T 3iev_A 193 TD---LPLRLLAAEIVREKAMMLTREEVPTSIAVKINEI 228 (308)
T ss_dssp BC---CCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEE
T ss_pred cC---CCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEE
Confidence 22 2222445688999999999999998776544433
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.72 E-value=3.4e-18 Score=175.69 Aligned_cols=210 Identities=20% Similarity=0.257 Sum_probs=126.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.+.|++||.+|||||||+|+|+|.++ .+++..|.. | +..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~-----~ivs~~~~t-----T------------------------------r~~ 45 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKV-----APISPRPQT-----T------------------------------RKR 45 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSCC-----C------------------------------CSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCce-----eeecCCCCc-----e------------------------------eEE
Confidence 567899999999999999999999987 334444400 0 000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
..+ +...+..+++||||||+.+... .+.+.+...+..|++.+|++++++ +++..+...+.
T Consensus 46 i~~-------------i~~~~~~~l~l~DTpG~~~~~~-----~l~~~~~~~~~~~l~~ad~il~Vv-D~~~~~~~~~~- 105 (301)
T 1wf3_A 46 LRG-------------ILTEGRRQIVFVDTPGLHKPMD-----ALGEFMDQEVYEALADVNAVVWVV-DLRHPPTPEDE- 105 (301)
T ss_dssp EEE-------------EEEETTEEEEEEECCCCCCCCS-----HHHHHHHHHHHHHTSSCSEEEEEE-ETTSCCCHHHH-
T ss_pred EEE-------------EEEeCCcEEEEecCccccchhh-----HHHHHHHHHHHHHHhcCCEEEEEE-ECCCCCChHHH-
Confidence 001 1222346799999999876432 366677888999999999877655 55444433332
Q ss_pred HHHHHhCCC--CCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCCh---hhhccCCcHHHHHHHHHhHhccC
Q 006958 194 KLAREVDPT--GERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQ---ADINKNVDMIAARRKEREYFETS 268 (624)
Q Consensus 194 ~l~~~~d~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~~~~e~~~f~~~ 268 (624)
.+.+.+... +.|+++|+||+|+........+.+.. + .++..+++.|+ .+++.+++.+.....+.++++..
T Consensus 106 ~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~--~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~ 180 (301)
T 1wf3_A 106 LVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHE--L---LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPE 180 (301)
T ss_dssp HHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHH--T---STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCT
T ss_pred HHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHH--h---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCc
Confidence 233444433 78999999999998643212333321 1 34444555555 45544444433332232333322
Q ss_pred CCC-CccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006958 269 PEY-GHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNID 311 (624)
Q Consensus 269 ~~~-~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~~~l~ 311 (624)
..+ ++.+.+ ....+.+++.+++.+.+++|+......+.+.
T Consensus 181 ~~~~td~~~~---~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~ 221 (301)
T 1wf3_A 181 DYAKSDQTFG---EWVAEILREEAMKRLWHEVPYAVATKVEEVA 221 (301)
T ss_dssp TCCSBSSCHH---HHHHHHHHHHHHHTCCTTHHHHCEEEEEEEE
T ss_pred ccccCCCCHH---HHHHHHHHHHHHHHhhcccCceEEEEEEEEE
Confidence 222 232222 2356888999999999999987765544433
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.61 E-value=5.5e-17 Score=166.85 Aligned_cols=208 Identities=17% Similarity=0.260 Sum_probs=118.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.+.|++||++|||||||+|+|+|..+. +++..| + +| ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-----i~s~~~---~--tT------------------------------r~~ 46 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-----ITSRKA---Q--TT------------------------------RHR 46 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-----ECCCCS---S--CC------------------------------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-----ccCCCC---C--cc------------------------------eee
Confidence 5678999999999999999999999762 223232 0 00 000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCc-cccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT-KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~-~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
..| +...+..+++++||||+. .... .+.+.+...+..+++.+|++++++ ++.. +...+.
T Consensus 47 ~~g-------------i~~~~~~~i~~iDTpG~~~~~~~-----~l~~~~~~~~~~~l~~~D~vl~Vv-d~~~-~~~~~~ 106 (301)
T 1ega_A 47 IVG-------------IHTEGAYQAIYVDTPGLHMEEKR-----AINRLMNKAASSSIGDVELVIFVV-EGTR-WTPDDE 106 (301)
T ss_dssp EEE-------------EEEETTEEEEEESSSSCCHHHHH-----HHHHHHTCCTTSCCCCEEEEEEEE-ETTC-CCHHHH
T ss_pred EEE-------------EEEECCeeEEEEECcCCCccchh-----hHHHHHHHHHHHHHhcCCEEEEEE-eCCC-CCHHHH
Confidence 001 122234579999999976 2211 122233444567788999766655 4444 554443
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChh---hhccCCcHHHHHHHHHhHhccCC
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA---DINKNVDMIAARRKEREYFETSP 269 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~---~~~~~~~~~~~~~~e~~~f~~~~ 269 (624)
.+++.+...+.|.++|+||+|+........+.+. .+...+|+..+++.|+. ++..+.+.+.....+.++++...
T Consensus 107 -~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~--~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~ 183 (301)
T 1ega_A 107 -MVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQ--FLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPED 183 (301)
T ss_dssp -HHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHH--HHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTT
T ss_pred -HHHHHHHhcCCCEEEEEECcccCccHHHHHHHHH--HHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCcc
Confidence 3556665668999999999999863223333332 12223455455666654 33333332222222222222222
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006958 270 EYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALIN 307 (624)
Q Consensus 270 ~~~~~~~~~g~~~L~~~l~~~l~~~i~~~LP~l~~~i~ 307 (624)
..++.+.+ ....+.+++.+.+.+.+++|+....+.
T Consensus 184 ~~~d~~~~---~~~~e~~re~l~~~l~~e~p~~~~v~i 218 (301)
T 1ega_A 184 YITDRSQR---FMASEIIREKLMRFLGAELPYSVTVEI 218 (301)
T ss_dssp CCSCCSHH---HHHHHHHHHHHHHHHGGGCCTTEEEEE
T ss_pred ccCCCCHH---HHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 22232222 235678899999999999997755443
No 12
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.53 E-value=1.6e-14 Score=141.19 Aligned_cols=130 Identities=23% Similarity=0.372 Sum_probs=84.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..|+|+|+|.+|||||||+|+|+|..++. .++..|
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~----~~~~~~----------------------------------------- 62 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLA----FASKTP----------------------------------------- 62 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSS----CTTCCC-----------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcce----eecCCC-----------------------------------------
Confidence 67899999999999999999999987321 111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcC---CCEEEEEEecCCCccccH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK---PSCIILAISPANQDIATS 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~---~~~iiL~V~~a~~d~~~~ 190 (624)
+.+.......+...+...++||||||+..... +....+.+..++..|+.. +|.+++ |++++..+...
T Consensus 63 ------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~-v~d~~~~~~~~ 132 (223)
T 4dhe_A 63 ------GRTQHINYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMIL-MMDARRPLTEL 132 (223)
T ss_dssp ------CSCCCEEEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEE-EEETTSCCCHH
T ss_pred ------CcccceEEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEE-EEeCCCCCCHH
Confidence 01111111122223446899999999765432 233467778888888876 555555 55555444433
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+ ..+.+.+...+.|+++|+||+|+.+..
T Consensus 133 ~-~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 133 D-RRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp H-HHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred H-HHHHHHHHhcCCCEEEEEeccccCChh
Confidence 2 335555555678999999999998653
No 13
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.52 E-value=1e-14 Score=146.31 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=92.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.|.|+++|.+|+|||||+|+|+|..+ ..+.- .+|.-.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~----------------------------------------- 38 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEK----------------------------------------- 38 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEE-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEE-----------------------------------------
Confidence 38999999999999999999999874 22111 111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a~~d~~~~~ 191 (624)
..-.+.. +...++||||||+.+....++..... +.+...|+ .++|++|+++...+ ...
T Consensus 39 ------------~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~vi~VvDas~----~~~ 98 (256)
T 3iby_A 39 ------------KTGEFLL-GEHLIEITDLPGVYSLVANAEGISQD---EQIAAQSVIDLEYDCIINVIDACH----LER 98 (256)
T ss_dssp ------------EEEEEEE-TTEEEEEEECCCCSSCC------CHH---HHHHHHHHHHSCCSEEEEEEEGGG----HHH
T ss_pred ------------EEEEEEE-CCeEEEEEeCCCcccccccccCCCHH---HHHHHHHHhhCCCCEEEEEeeCCC----chh
Confidence 1111111 22478999999988754322111122 44666788 89998877665443 344
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccc---cHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
.+.+..++...+.|+++|+||+|+..... +... +. ..++.+++.+++.++.+++++++
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~-l~---~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEK-LE---SLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHH-HH---HHHCSCEEECBGGGTBSHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHH-HH---HHcCCCEEEEECCCCCCHHHHHH
Confidence 45577778778999999999999976532 2222 21 12345666666666555544443
No 14
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=2.6e-14 Score=154.79 Aligned_cols=163 Identities=17% Similarity=0.272 Sum_probs=94.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+|.|++||.+|+|||||+|+|+|..+ .++...|...
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~g~T--------------------------------------- 36 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEEGVT--------------------------------------- 36 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCCCCc---------------------------------------
Confidence 48999999999999999999999875 3333333111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
.+.+.-.+.. +...+.||||||+..... +.+.+.+...+..|++++|++++++ ++...+...+. .
T Consensus 37 --------~d~~~~~~~~-~~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V~-D~~~~~~~~d~-~ 101 (439)
T 1mky_A 37 --------RDPVQDTVEW-YGKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFVV-DGKRGITKEDE-S 101 (439)
T ss_dssp ---------CCSEEEEEE-TTEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEEE-ETTTCCCHHHH-H
T ss_pred --------cceeeEEEEE-CCeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHH-H
Confidence 1111111111 224689999999875321 2245667888999999999876655 55554444332 2
Q ss_pred HHHHhCCCCCceEEEeccCcccCc-cccH-HHHHhCcccccCC-CeeEEEeCChhhhccCCcHHHHHHHH
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDK-GTNA-LEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIAARRKE 261 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~-~~~~-~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (624)
+++.+...+.|+++|+||+|+.+. .... .++ +.++. .++.+++.++.++.++++.+.....+
T Consensus 102 i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 102 LADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 333333347899999999998643 1111 222 23344 35667777777776666655554443
No 15
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.49 E-value=4.5e-14 Score=141.87 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc--cccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (624)
..+.|+|+|.+|||||||+|+|+|...++.+... +|+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~------------------------------------ 64 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKS------------------------------------ 64 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEE------------------------------------
Confidence 4579999999999999999999998865544332 23322111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
....+..++.||||||+...... .+...+.+...+..+++.+|++|+|+.. +. +...+
T Consensus 65 ------------------~~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~-~~-~~~~~ 122 (260)
T 2xtp_A 65 ------------------QGSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQL-GR-YTSQD 122 (260)
T ss_dssp ------------------EEEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEET-TC-CCHHH
T ss_pred ------------------EEEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeC-CC-CCHHH
Confidence 01112356999999998865432 2223334556666788999987776544 43 33322
Q ss_pred --HHHHHHHhCCC--CCceEEEec-cCcccCc
Q 006958 192 --AIKLAREVDPT--GERTFGVLT-KLDLMDK 218 (624)
Q Consensus 192 --~~~l~~~~d~~--~~rti~Vlt-K~D~~~~ 218 (624)
....+..+... +.+.++|+| |+|+.+.
T Consensus 123 ~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 123 QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 33344443221 467888888 9999843
No 16
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.47 E-value=1.5e-13 Score=131.14 Aligned_cols=126 Identities=25% Similarity=0.385 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+|+|.+|||||||+|+|+|..+.+.... .|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSS----KP----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCC----CC-----------------------------------------
Confidence 578999999999999999999999875321110 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCC---CEEEEEEecCCCccccH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP---SCIILAISPANQDIATS 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~---~~iiL~V~~a~~d~~~~ 190 (624)
| .+.......+ ...+.+|||||+..... +.+..+.+..+...|+..+ |+++++ .+++......
T Consensus 57 --~----~t~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~d~~~~~~~~ 122 (195)
T 1svi_A 57 --G----KTQTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQI-VDLRHAPSND 122 (195)
T ss_dssp ---------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEE-EETTSCCCHH
T ss_pred --C----ceeeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEE-EECCCCCCHH
Confidence 0 0001111111 13699999999765322 3334666778888888766 776664 4555444333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+ ..+.+.+...+.|+++|+||+|+.+..
T Consensus 123 ~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 123 D-VQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp H-HHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred H-HHHHHHHHHcCCCEEEEEECcccCChH
Confidence 3 223444444678999999999998754
No 17
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.47 E-value=1.9e-13 Score=130.14 Aligned_cols=160 Identities=20% Similarity=0.171 Sum_probs=91.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccccc-ccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV-TRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
..|+|+|+|.+|||||||+|+|+|..+-+.+.... |+.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~---------------------------------------- 61 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI---------------------------------------- 61 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCE----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCe----------------------------------------
Confidence 67899999999999999999999987422111111 1111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCC---CEEEEEEecCCCcccc
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP---SCIILAISPANQDIAT 189 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~---~~iiL~V~~a~~d~~~ 189 (624)
... . ....+.+|||||+..... +....+.+..+...|+..+ +++++ |+++......
T Consensus 62 -------------~~~-~---~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~-v~d~~~~~~~ 120 (195)
T 3pqc_A 62 -------------NFY-L---VNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFL-LVDGRIPPQD 120 (195)
T ss_dssp -------------EEE-E---ETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEE-EEETTSCCCH
T ss_pred -------------EEE-E---ECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEE-EecCCCCCCH
Confidence 000 0 124689999999765322 2233556777888888765 65555 5555544333
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCcccc--HHHHHhCcccc-cCCCeeEEEeCChhhhccCCcHH
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKGTN--ALEVLEGRSYR-LQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~-l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
.+. .+.+.+...+.|+++|+||+|+.+.... ..+.+...... ....|+.+++.++.++++.+..+
T Consensus 121 ~~~-~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 121 SDL-MMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp HHH-HHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH
Confidence 322 2444444457899999999999865321 11111110111 12345555555555555444433
No 18
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.47 E-value=1e-13 Score=149.92 Aligned_cols=157 Identities=22% Similarity=0.288 Sum_probs=89.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
.|.|++||.+|+|||||+|+|+|..+ .++...|.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~g----------------------------------------- 36 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTPG----------------------------------------- 36 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCC-----------------------------------------
Confidence 58999999999999999999999865 33333331
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
.+.+.....+. .+...++||||||+.... +++.+.+...+..|++.+|++|+++ ++.......+. .
T Consensus 37 ------~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vv-D~~~~~~~~d~-~ 102 (436)
T 2hjg_A 37 ------VTRDRIYSSAE-WLNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMV-NGREGVTAADE-E 102 (436)
T ss_dssp ----------CEEEECT-TCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEE-ETTTCSCHHHH-H
T ss_pred ------CccceEEEEEE-ECCceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEE-eCCCCCCHHHH-H
Confidence 11111111111 123579999999986421 2266788889999999999776654 55554444443 3
Q ss_pred HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCC-CeeEEEeCChhhhccCCcHHH
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+++.+...+.|+++|+||+|+.+...... +.+.+++ .++.+++..+.++.++++.+.
T Consensus 103 ~~~~l~~~~~pvilv~NK~D~~~~~~~~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 103 VAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp HHHHHTTCCSCEEEEEECCCC-----CCC-----SSGGGSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEECccCccchhhHH-----HHHHcCCCCeEEEeCcCCCChHHHHHHHH
Confidence 66667777899999999999875432111 1223333 345555555555555444443
No 19
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.46 E-value=3.8e-14 Score=154.08 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=75.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|.+|||||||+|+|+|.++ .+++..|....
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~gtT~--------------------------------------- 269 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMPGTTR--------------------------------------- 269 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCceE---------------------------------------
Confidence 4699999999999999999999865 33444441111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~ 192 (624)
.+. ...+.+ +..+++||||||+.+.... +....-..+..|++.+|++++++. ++...... ..
T Consensus 270 ----d~~--~~~i~~---~g~~l~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD-~s~~~s~~~~~~~ 334 (476)
T 3gee_A 270 ----DYI--EECFIH---DKTMFRLTDTAGLREAGEE-----IEHEGIRRSRMKMAEADLILYLLD-LGTERLDDELTEI 334 (476)
T ss_dssp ---------CEEEEE---TTEEEEEEC-------------------------CCCSSCSEEEEEEE-TTTCSSGGGHHHH
T ss_pred ----EEE--EEEEEE---CCeEEEEEECCCCCcchhH-----HHHHHHHHHHhhcccCCEEEEEEE-CCCCcchhhhHHH
Confidence 000 011112 2356999999998653211 111112345678899998777554 44333321 44
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
..+.+.+. +.|+|+|+||+|+.+......+.+... . ...++.+++.++.++++++..+.
T Consensus 335 ~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~--~-~~~~i~vSAktg~GI~eL~~~i~ 393 (476)
T 3gee_A 335 RELKAAHP--AAKFLTVANKLDRAANADALIRAIADG--T-GTEVIGISALNGDGIDTLKQHMG 393 (476)
T ss_dssp HHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHH--H-TSCEEECBTTTTBSHHHHHHHHT
T ss_pred HHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhc--C-CCceEEEEECCCCCHHHHHHHHH
Confidence 44666665 689999999999986543211112110 0 13566666666666655544443
No 20
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.46 E-value=1e-13 Score=127.68 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+|+|+|+|++|+|||||++++++..+.+.+ ..|.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~----------------------------------------- 34 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVA-----DVPG----------------------------------------- 34 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeecc-----CCCC-----------------------------------------
Confidence 479999999999999999999998752111 1110
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--~~ 192 (624)
.+.+.....+.. +...+.+|||||...... ....+......+++.+|++|+++.. +...... ..
T Consensus 35 ------~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~~ 100 (161)
T 2dyk_A 35 ------VTRDLKEGVVET-DRGRFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLFAVDG-RAELTQADYEV 100 (161)
T ss_dssp ---------CCEEEEEEE-TTEEEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEEEEES-SSCCCHHHHHH
T ss_pred ------ceecceEEEEEe-CCceEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEEEEEC-CCcccHhHHHH
Confidence 000001111111 124689999999765321 2344567778899999987776544 4333322 22
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCC-CeeEEEeCChhhhccC
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQH-PWVGIVNRSQADINKN 251 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~ 251 (624)
..+.+. .+.|+++|+||+|+.+......++. .++. +|+.+++.++.++++.
T Consensus 101 ~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 101 AEYLRR---KGKPVILVATKVDDPKHELYLGPLY-----GLGFGDPIPTSSEHARGLEEL 152 (161)
T ss_dssp HHHHHH---HTCCEEEEEECCCSGGGGGGCGGGG-----GGSSCSCEECBTTTTBSHHHH
T ss_pred HHHHHh---cCCCEEEEEECcccccchHhHHHHH-----hCCCCCeEEEecccCCChHHH
Confidence 233333 4689999999999986532222221 2223 4566666555554443
No 21
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.46 E-value=9.9e-14 Score=132.41 Aligned_cols=161 Identities=14% Similarity=0.170 Sum_probs=95.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|+|||||+|+|++..+.+......|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 53 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF----------------------------------------- 53 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE-----------------------------------------
Confidence 457899999999999999999999875222211111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~ 191 (624)
....+.+ ......+.||||||.... ..+...|++.+|++|+++...+.. .....
T Consensus 54 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 109 (196)
T 3tkl_A 54 ----------KIRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 109 (196)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHHH
Confidence 0001111 111246899999994332 345678899999887765444321 11233
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
++..+....+.+.|+++|+||+|+.+................+..|+.+.+.++.++++.+..+....
T Consensus 110 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 110 WLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44455566666889999999999976542111111111123345677777777777766555554443
No 22
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.46 E-value=1.1e-13 Score=150.42 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=93.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
+.|++||.+|||||||+|+|+|.++ .+++..|
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~-----a~vs~~~------------------------------------------- 275 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR-----AIVTDIP------------------------------------------- 275 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB-----CCCCCSS-------------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC-----CccCCCC-------------------------------------------
Confidence 6899999999999999999999875 2333333
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCc-cccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT-KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~-~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
|.+..+.. ..+.+ +..+++||||||+. .......... ......|++.+|++++++. ++.....++ .+
T Consensus 276 gTT~d~~~--~~i~~---~g~~~~l~DTaG~~~~~~~~ve~~g-----i~~~~~~~~~aD~vl~VvD-~s~~~s~~~-~~ 343 (482)
T 1xzp_A 276 GTTRDVIS--EEIVI---RGILFRIVDTAGVRSETNDLVERLG-----IERTLQEIEKADIVLFVLD-ASSPLDEED-RK 343 (482)
T ss_dssp CCSSCSCC--EEEEE---TTEEEEEEESSCCCSSCCTTCCCCC-----HHHHHHHHHHCSEEEEEEE-TTSCCCHHH-HH
T ss_pred CeeeeeEE--EEEec---CCeEEEEEECCCccccchhhHHHHH-----HHHHHHHhhcccEEEEEec-CCCCCCHHH-HH
Confidence 00000101 11112 23568999999987 4322111100 2345678899998776554 443333222 33
Q ss_pred HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHH
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
+...+ .+.|+|+|+||+|+.+.. ...++.. .......++.+++.++.++++++..+...
T Consensus 344 il~~l--~~~piivV~NK~DL~~~~-~~~~~~~--~~~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 344 ILERI--KNKRYLVVINKVDVVEKI-NEEEIKN--KLGTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH--HHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHh--cCCCEEEEEECccccccc-CHHHHHH--HhcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44444 368999999999997542 2222111 01122467888888888877776666554
No 23
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.46 E-value=2.2e-13 Score=125.85 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=88.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|+|++|||||||++++++..+.+.. ...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~------------------------------------------ 40 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKY-DPTIEDFY------------------------------------------ 40 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccC-CCCcceeE------------------------------------------
Confidence 47999999999999999999987752211 11111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~ 192 (624)
...+.+ ......+.||||||... +..+...|++.+|++++++...+ .... ..+
T Consensus 41 ---------~~~~~~-~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~ 96 (167)
T 1kao_A 41 ---------RKEIEV-DSSPSVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVYSLVN-QQSFQDIKPM 96 (167)
T ss_dssp ---------EEEEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTC-HHHHHHHHHH
T ss_pred ---------EEEEEE-CCEEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEeCCC-HHHHHHHHHH
Confidence 000111 11123589999999432 14566778899998777654443 2111 122
Q ss_pred HH-HHHHhCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 193 IK-LAREVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 193 ~~-l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
+. +.+.....+.|+++|+||+|+.+.... ...+.. ..+.+|+.+++.++.++++.+..+..
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 97 RDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE----EWGCPFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH----HHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH----HhCCCEEEecCCCCcCHHHHHHHHHH
Confidence 22 334444567999999999999754321 122221 22456777777777776655554443
No 24
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.45 E-value=1.8e-13 Score=138.70 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=79.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 4799999999999999999999887554432111100
Q ss_pred CCCCCcccccEEEEEecCC-CCCcEEEeCCCCccccCCC-CCccHHHHHHHHHHHhhcC-------------CCEEEEEE
Q 006958 116 GKSKQISNIPIQLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYVEK-------------PSCIILAI 180 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~~-~~~~~~~~i~~~~~~yi~~-------------~~~iiL~V 180 (624)
. ..+..+.....+...+ ...++||||||+....... .-..+...+.+....|+.. +|++++++
T Consensus 46 ~--~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i 123 (274)
T 3t5d_A 46 K--KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFI 123 (274)
T ss_dssp -----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEE
T ss_pred C--CceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEe
Confidence 0 0011111112222211 1379999999986543221 1122222333333555543 77888878
Q ss_pred ecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 181 ~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.++...+...+. .+++.+.. +.|+|+|+||+|+....
T Consensus 124 ~~~~~~~~~~d~-~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 124 APSGHGLKPLDI-EFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp CSCCSSCCHHHH-HHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred cCCCCCCCHHHH-HHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 777766655553 36777776 89999999999998543
No 25
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.45 E-value=1.4e-13 Score=137.20 Aligned_cols=128 Identities=17% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc--cccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (624)
.-.+|++||.+|||||||+|+|+|..++..+... +|+.+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~----------------------------------- 64 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS----------------------------------- 64 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE-----------------------------------
Confidence 3458999999999999999999999875544332 444442211
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH-
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS- 190 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~- 190 (624)
+ ..+...++||||||+....... .+.....+......+...+|++++++ +++. +...
T Consensus 65 ------------------~-~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~-d~~~-~~~~~ 122 (247)
T 3lxw_A 65 ------------------R-RWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVT-QLGR-FTAQD 122 (247)
T ss_dssp ------------------E-EETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEE-ETTB-CCHHH
T ss_pred ------------------E-EECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEE-eCCC-CCHHH
Confidence 1 1123569999999997543220 01112222222233348999877655 5443 3332
Q ss_pred -HHHHHHHHh-CC--CCCceEEEeccCcccCc
Q 006958 191 -DAIKLAREV-DP--TGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 -~~~~l~~~~-d~--~~~rti~VltK~D~~~~ 218 (624)
.+++.+.++ .+ .+.++|+|.||.|+.+.
T Consensus 123 ~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 123 QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 234444443 22 25789999999999653
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.45 E-value=6.4e-14 Score=130.26 Aligned_cols=152 Identities=17% Similarity=0.132 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||+|++++..+.+......+.-..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 44 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL---------------------------------------- 44 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE----------------------------------------
Confidence 3468999999999999999999988752211111110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
...+.+ ......+.+|||||... +..+...|++++|++|+++...+ .... .
T Consensus 45 -----------~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 98 (170)
T 1z08_A 45 -----------TKKLNI-GGKRVNLAIWDTAGQER-------------FHALGPIYYRDSNGAILVYDITD-EDSFQKVK 98 (170)
T ss_dssp -----------EEEEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTC-HHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHh-------------hhhhHHHHhccCCEEEEEEECcC-HHHHHHHH
Confidence 000111 11124689999999332 24456678899998877654433 2211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
.++..++...+.+.|+++|+||+|+.+... +..++.. ..+..|+.+++.++.++++.+..+
T Consensus 99 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 99 NWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE----SVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHH
Confidence 233333444445789999999999976432 1222221 223456666666665555444433
No 27
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.45 E-value=2.4e-13 Score=133.65 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=77.4
Q ss_pred CCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHH
Q 006958 27 EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKE 106 (624)
Q Consensus 27 ~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 106 (624)
.+|......++|+|+|.+|||||||+|+|+|..+.+.....+|+.+
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~---------------------------------- 66 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL---------------------------------- 66 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE----------------------------------
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee----------------------------------
Confidence 4554445678999999999999999999999876211111111111
Q ss_pred HHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-
Q 006958 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ- 185 (624)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~- 185 (624)
.+.....+...+.||||||....+... .. ... ......|...+|++|+++...+.
T Consensus 67 --------------------~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~-~~~-~~~~~~~~~~~d~~i~v~d~~~~~ 122 (228)
T 2qu8_A 67 --------------------YVGHFDHKLNKYQIIDTPGLLDRAFEN--RN-TIE-MTTITALAHINGVILFIIDISEQC 122 (228)
T ss_dssp --------------------EEEEEEETTEEEEEEECTTTTTSCGGG--CC-HHH-HHHHHHHHTSSEEEEEEEETTCTT
T ss_pred --------------------eeeeeecCCCeEEEEECCCCcCcccch--hh-hHH-HHHHHHhhccccEEEEEEeccccc
Confidence 010111123568999999986532210 00 011 12234567788877765544332
Q ss_pred ccccHHHHHHHHHhCCC--CCceEEEeccCcccCc
Q 006958 186 DIATSDAIKLAREVDPT--GERTFGVLTKLDLMDK 218 (624)
Q Consensus 186 d~~~~~~~~l~~~~d~~--~~rti~VltK~D~~~~ 218 (624)
.+....+..+...+... +.|+++|+||+|+.+.
T Consensus 123 s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 123 GLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp SSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred CcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 12223444555655443 7899999999999764
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=1.4e-13 Score=129.24 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||+|+|++..+.+.....++.....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~--------------------------------------- 49 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR--------------------------------------- 49 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEE---------------------------------------
Confidence 45689999999999999999999987633222111111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc---cH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---TS 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~---~~ 190 (624)
...+.+ ......+.+|||||.. .+..+...|++++|++|+++. ++.... ..
T Consensus 50 -----------~~~~~~-~~~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 103 (180)
T 2g6b_A 50 -----------NKVLDV-DGVKVKLQMWDTAGQE-------------RFRSVTHAYYRDAHALLLLYD-VTNKASFDNIQ 103 (180)
T ss_dssp -----------EEEEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEE-TTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcH-------------HHHHHHHHHccCCCEEEEEEE-CCCHHHHHHHH
Confidence 000111 1112468999999932 235567789999998877654 443221 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+....+.+.|+++|+||+|+.+.
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 3444555555568899999999999864
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=3e-14 Score=136.07 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=87.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||+|+|++..+.+ ... .|..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~-~~~~------------------------------------------ 57 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDH-NIS-PTIG------------------------------------------ 57 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCC-CCSS------------------------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCC-CcC-CCcc------------------------------------------
Confidence 45689999999999999999999987521 111 0000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
.+.....+.+ ......+.||||||... +..+...|++.+|++|+++...+. ... .
T Consensus 58 -------~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~d~~~~-~s~~~~~ 115 (192)
T 2fg5_A 58 -------ASFMTKTVPC-GNELHKFLIWDTAGQER-------------FHSLAPMYYRGSAAAVIVYDITKQ-DSFYTLK 115 (192)
T ss_dssp -------EEEEEEEEEC-SSSEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCT-HHHHHHH
T ss_pred -------eeEEEEEEEe-CCEEEEEEEEcCCCchh-------------hHhhhHHhhccCCEEEEEEeCCCH-HHHHHHH
Confidence 0000001111 11224689999999432 134466789999988776544332 221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (624)
.++..++...+.+.|+++|+||+|+.+... +..++.. ..+..|+.+++.++.++++.+..
T Consensus 116 ~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 116 KWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE----SIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TTTCEEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCEEEEEeCCCCcCHHHHHHH
Confidence 344444555556789999999999975332 1223322 22344566666555555444433
No 30
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.44 E-value=1e-13 Score=128.39 Aligned_cols=154 Identities=10% Similarity=0.052 Sum_probs=71.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..+|+|+|++|||||||+|+++|..+-+......+.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD------------------------------------------ 39 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE------------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE------------------------------------------
Confidence 46899999999999999999998765222111111110
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~--- 191 (624)
..+.+ ......+.+|||||.. ....+...|++.+|++++++...+. .....
T Consensus 40 -----------~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~ 93 (166)
T 3q72_A 40 -----------RSIVV-DGEEASLMVYDIWEQD-------------GGRWLPGHCMAMGDAYVIVYSVTDK-GSFEKASE 93 (166)
T ss_dssp -----------EEEEE-TTEEEEEEEEECC----------------------------CCEEEEEEETTCH-HHHHHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCCCc-------------cchhhhhhhhhhCCEEEEEEECCCH-HHHHHHHH
Confidence 00011 1122468899999943 2355677889999988776654432 11122
Q ss_pred HHHHHHH-hCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 192 AIKLARE-VDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 192 ~~~l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
++..+.. ....+.|+++|+||+|+.+......+.........+.+|+.+++.++.++++.+..+.
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 94 LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 2222222 2335789999999999976432111111111112234455555555555544444333
No 31
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.44 E-value=1.6e-13 Score=129.69 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=89.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|||||||+++|++..+.+......+... .
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~------------------------------------- 48 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF---G------------------------------------- 48 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE---E-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE---E-------------------------------------
Confidence 457999999999999999999999876322111111000 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
...+.+ ......+.||||||... +..+...|++++|++|+++...+ .... .
T Consensus 49 -----------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 102 (186)
T 2bme_A 49 -----------SKIINV-GGKYVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITS-RETYNALT 102 (186)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTSTTCSEEEEEEETTC-HHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHHhcCCEEEEEEECcC-HHHHHHHH
Confidence 000111 11124689999999432 25667889999998877664433 2211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc-cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
.++..++.....+.|+++|+||+|+.+... ...+... .....+..|+.+++.++.++.+.+..+..
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASR-FAQENELMFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH-HHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 334344555556889999999999975322 1111110 01122344555555555555554444433
No 32
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.44 E-value=7.8e-14 Score=151.07 Aligned_cols=156 Identities=22% Similarity=0.240 Sum_probs=83.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+++|.+|||||||+|+|+|.++ .+++..|.. | .+...
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~gt-----T------------------------------~d~~~ 264 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR-----AIVTDLPGT-----T------------------------------RDVVE 264 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB-----SCCSCCTTC-----C------------------------------HHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCCCe-----e------------------------------EEEEE
Confidence 3699999999999999999999765 334433300 0 00000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
. .+.+ +..+++||||||+...... +..........++..+|.+++++ +++..+...+ ..+
T Consensus 265 ~----------~i~~---~g~~v~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~Vv-D~s~~~~~~~-~~i 324 (462)
T 3geh_A 265 S----------QLVV---GGIPVQVLDTAGIRETSDQ-----VEKIGVERSRQAANTADLVLLTI-DAATGWTTGD-QEI 324 (462)
T ss_dssp H----------EEEE---TTEEEEECC-------------------------CCCCSCSEEEEEE-ETTTCSCHHH-HHH
T ss_pred E----------EEEE---CCEEEEEEECCccccchhH-----HHHHHHHHHhhhhhcCCEEEEEe-ccCCCCCHHH-HHH
Confidence 0 0111 2356899999998643211 11111233566888999776655 4544443333 335
Q ss_pred HHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
.+.+.. .|+++|+||+|+.+.... . .........+++.+++.++.++++++..+..
T Consensus 325 ~~~l~~--~piivV~NK~Dl~~~~~~--~--~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~ 380 (462)
T 3geh_A 325 YEQVKH--RPLILVMNKIDLVEKQLI--T--SLEYPENITQIVHTAAAQKQGIDSLETAILE 380 (462)
T ss_dssp HHHHTT--SCEEEEEECTTSSCGGGS--T--TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHhccC--CcEEEEEECCCCCcchhh--H--HHHHhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 555543 699999999999765321 1 1111223356777887777777665554443
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.44 E-value=1.9e-13 Score=126.42 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=72.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..+|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 44 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK-------------------------------------- 44 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEE--------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEE--------------------------------------
Confidence 45899999999999999999999875 322222221111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SD 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~ 191 (624)
+.+ ......+.||||||... ...+...|++.+|++++++...+. ... ..
T Consensus 45 -------------~~~-~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~ 96 (168)
T 1u8z_A 45 -------------VVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEM-ESFAATAD 96 (168)
T ss_dssp -------------EEE-TTEEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCH-HHHHHHHH
T ss_pred -------------EEE-CCEEEEEEEEECCCcch-------------hHHHHHHHhhcCCEEEEEEECCCH-HHHHHHHH
Confidence 001 11124689999999332 256777889999988776644432 111 12
Q ss_pred HHH-HHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIK-LAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~-l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++. +.......+.|+++|+||+|+.+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 222 333344457899999999999764
No 34
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.44 E-value=1.5e-13 Score=128.71 Aligned_cols=149 Identities=14% Similarity=0.168 Sum_probs=87.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|.+|+|||||+|+|++..+ +.....++...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 51 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVE----------------------------------------- 51 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCC-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceE-----------------------------------------
Confidence 467999999999999999999999875 22111111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
.....+.+ ......+.||||||... +..+...|++++|++|+++. ++..... .
T Consensus 52 ---------~~~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 107 (179)
T 1z0f_A 52 ---------FGTRIIEV-SGQKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYD-ITRRSTYNHLS 107 (179)
T ss_dssp ---------EEEEEEEE-TTEEEEEEEEECTTGGG-------------TCHHHHHHHHTCSEEEEEEE-TTCHHHHHTHH
T ss_pred ---------EEEEEEEE-CCeEEEEEEEECCCChH-------------hhhhHHHHhccCCEEEEEEe-CcCHHHHHHHH
Confidence 00011111 11124689999999332 24567789999998777654 4432211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCC
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (624)
.++..++.....+.|+++|+||+|+.+... +..++.. ..+..|+.+++.++.++++.+
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE----ENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH----HTTCEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHH
Confidence 344445555556789999999999975432 1222222 223445555555555544433
No 35
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=135.38 Aligned_cols=129 Identities=17% Similarity=0.252 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (624)
..++|+|+|.+|||||||+|+|+|..+++.+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 567999999999999999999999987444322 2333331111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH
Q 006958 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS 190 (624)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~~ 190 (624)
+. .+...++||||||+...... +++..+.+...+..+.+.+|++++++ +++. +....
T Consensus 73 ------------------~~-~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~-d~~~~~~~~~ 130 (239)
T 3lxx_A 73 ------------------SS-WKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVV-PLGRYTEEEH 130 (239)
T ss_dssp ------------------EE-ETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEE-ETTCCSSHHH
T ss_pred ------------------EE-eCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEe-eCCCCCHHHH
Confidence 11 12246899999999865433 23345566777777778899877755 4442 22222
Q ss_pred HHHHHHHH-hC-CCCCceEEEeccCcccCcc
Q 006958 191 DAIKLARE-VD-PTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 ~~~~l~~~-~d-~~~~rti~VltK~D~~~~~ 219 (624)
.++..+.. +. ....++++|+||+|+.+..
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 33332221 11 1245899999999997653
No 36
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=1.5e-13 Score=130.91 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=91.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|+|||||+++|++..+.+......+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 57 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG-------------------------------------------- 57 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--------------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--------------------------------------------
Confidence 466999999999999999999999875221111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~ 191 (624)
.......+.+ ......+.|||||| .+.+..+...|++.+|++|+++...+.. -....
T Consensus 58 -------~~~~~~~~~~-~~~~~~~~i~Dt~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 116 (191)
T 3dz8_A 58 -------IDFKVKTVYR-HEKRVKLQIWDTAG-------------QERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116 (191)
T ss_dssp -------TTEEEEEEEE-TTTTEEEEEECHHH-------------HHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------eEEEEEEEEE-CCEEEEEEEEeCCC-------------hHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHH
Confidence 0001111111 11235689999999 3445778889999999887765443321 11233
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
++..++.....+.|+++|+||+|+.+......+.........+..|+.+++.++.++.+.+..+
T Consensus 117 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 117 WATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 4555555566689999999999996543211111110011223345555555555554444433
No 37
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.43 E-value=7.9e-14 Score=129.52 Aligned_cols=153 Identities=17% Similarity=0.208 Sum_probs=85.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..+|+|+|++|+|||||+|+|++..+.+.....++.-.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 40 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF------------------------------------------ 40 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE------------------------------------------
Confidence 35899999999999999999999876322111111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~ 192 (624)
....+.+. .....+.||||||.... ..+...|++++|++|+++...+.. + ....+
T Consensus 41 ---------~~~~~~~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 97 (170)
T 1g16_A 41 ---------KIKTVDIN-GKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIKQW 97 (170)
T ss_dssp ---------EEEEEESS-SCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHH
T ss_pred ---------EEEEEEEC-CEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00001111 11246899999994432 233567889999877765443321 1 11234
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcccc---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+..+......+.|+++|+||+|+.+.... ..++.. ..+..|+.+++.++.++++.+..+.
T Consensus 98 ~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 98 FKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH----HcCCeEEEEECCCCCCHHHHHHHHH
Confidence 44455555567899999999999543221 122211 1234566666555555544444333
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=131.20 Aligned_cols=119 Identities=17% Similarity=0.229 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|+|||||+|+|++..+.+......+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-------------------------------------------- 60 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG-------------------------------------------- 60 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTT--------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccc--------------------------------------------
Confidence 445899999999999999999999875211111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
.+.....+.+. .....+.||||||... +..+...|++.+|++|+++. ++..... .
T Consensus 61 -------~~~~~~~~~~~-~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D-~~~~~s~~~~~ 118 (192)
T 2il1_A 61 -------VDFKIKTVELR-GKKIRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYD-ITKKETFDDLP 118 (192)
T ss_dssp -------EEEEEEEEEET-TEEEEEEEEEECCSGG-------------GHHHHHHHHHHCSEEEEEEE-TTCHHHHHTHH
T ss_pred -------eeEEEEEEEEC-CeEEEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEE-CcCHHHHHHHH
Confidence 00001111111 1124689999999432 25667788999998877654 4432211 3
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++...+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 119 KWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 3445566666678999999999999754
No 39
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=2e-13 Score=148.55 Aligned_cols=126 Identities=22% Similarity=0.328 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
-..|.|++||.+|||||||+|+|+|..+ +.+...|
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-----~~v~~~~---------------------------------------- 55 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTP---------------------------------------- 55 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE-----C----------------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCC----------------------------------------
Confidence 4689999999999999999999999875 2222222
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
+++.+.....+.. ....+++|||||+... .+.+.+.+...+..|++.+|++|+++ ++...+...+.
T Consensus 56 -------g~t~~~~~~~~~~-~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~Vv-D~~~~~~~~d~ 121 (456)
T 4dcu_A 56 -------GVTRDRIYSSAEW-LNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMV-NGREGVTAADE 121 (456)
T ss_dssp ------------CEEEECTT-CSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEE-ESSSCSCHHHH
T ss_pred -------CcceeEEEEEEEE-CCceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEEE-eCCCCCChHHH
Confidence 1111222222222 2368999999998732 23367888999999999999776654 55554544443
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+++.+...+.|+++|+||+|+.+.
T Consensus 122 -~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 122 -EVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp -HHHHHHTTCCSCEEEEEECC-----
T ss_pred -HHHHHHHHcCCCEEEEEECccchhh
Confidence 3667777789999999999998754
No 40
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.43 E-value=5.1e-13 Score=129.92 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC----CCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP----TGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~----~~~rti~Vlt 211 (624)
..+.|||||| .+.+..+...|++.+|++|+|+ +++..........+...+.. .+.|+++|+|
T Consensus 84 ~~l~l~Dt~G-------------~~~~~~~~~~~~~~~d~iilV~-D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLMF-DLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEES-------------HHHHHHHHHHHHTTCCEEEEEE-ETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCC-------------cHhHHhHHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 4689999999 3456778889999999877755 44433222333334454432 4689999999
Q ss_pred cCcccCcccc----HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHH
Q 006958 212 KLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 212 K~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
|+|+.+.... ..++.. ..+..|+.+.+.++.++++.+..+...
T Consensus 150 K~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 150 KADLPDQREVNERQARELAD----KYGIPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp CTTCGGGCCSCHHHHHHHHH----HTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CCccccccccCHHHHHHHHH----HCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 9999764221 122221 223456667666666665555544433
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=127.21 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+|+|++|+|||||+|+|+|..+-+....+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~--------------------------------------------- 37 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG--------------------------------------------- 37 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSS---------------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccc---------------------------------------------
Confidence 35789999999999999999999987522111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
.+.....+.+. .....+.+|||||.... ....+...|++.+|++++++...+. ....
T Consensus 38 -------~~~~~~~~~~~-~~~~~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~ 97 (175)
T 2nzj_A 38 -------EDVYERTLTVD-GEDTTLVVVDTWEAEKL-----------DKSWSQESCLQGGSAYVIVYSIADR-GSFESAS 97 (175)
T ss_dssp -------SSEEEEEEEET-TEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCH-HHHHHHH
T ss_pred -------cceeEEEEEEC-CEEEEEEEEecCCCCcc-----------chhhhHHhhcccCCEEEEEEECCCH-HHHHHHH
Confidence 00000111111 11246889999995431 0234556788999988776544332 1111
Q ss_pred HHHHHHHHh-CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 191 DAIKLAREV-DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 191 ~~~~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
.++..+... ...+.|+++|+||+|+.+...-..+.........+.+|+.+++.++.++++.+..+.
T Consensus 98 ~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 164 (175)
T 2nzj_A 98 ELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164 (175)
T ss_dssp HHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 222223332 234789999999999976432111111000111233456666655555555444443
No 42
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.42 E-value=2.2e-13 Score=136.71 Aligned_cols=154 Identities=21% Similarity=0.285 Sum_probs=92.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-+.|+++|++|+|||||+|+|+|..+ +.+. .|
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~-----~p----------------------------------------- 36 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVAN-----WP----------------------------------------- 36 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEE-----CT-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccC-----CC-----------------------------------------
Confidence 346899999999999999999999875 2111 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a~~d~~~~~ 191 (624)
| .+.+.....+.. +...+.||||||..+..... .. +.+...|+ ..+|++|+++...+ ...
T Consensus 37 --g----~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~ii~V~D~t~----~~~ 98 (258)
T 3a1s_A 37 --G----VTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSS----ID---EKIARDYLLKGDADLVILVADSVN----PEQ 98 (258)
T ss_dssp --T----SCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSS----HH---HHHHHHHHHHSCCSEEEEEEETTS----CHH
T ss_pred --C----ceEEEEEEEEEE-CCeEEEEEECCCcCccCCCC----HH---HHHHHHHHhhcCCCEEEEEeCCCc----hhh
Confidence 0 011111111111 23579999999987654321 11 34556666 58998777554443 123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccc---cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
.+.+..++...+.|+++|+||+|+.+... +...+. ..++.+++.+++.++.++++++..+.
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~~~i~ 162 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ----KHLGIPVVFTSSVTGEGLEELKEKIV 162 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH----HHHCSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH----HHcCCCEEEEEeeCCcCHHHHHHHHH
Confidence 34455566666899999999999975422 222222 12345667666666666655554443
No 43
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.42 E-value=2.5e-13 Score=128.96 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=45.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCC-CCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDP-TGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~~~l~~~~d~-~~~rti~Vlt 211 (624)
..+.||||||... +..+...|++++|++|+++. ++...... .++..+..... .+.|+++|+|
T Consensus 70 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLER-------------FRSLTTAFFRDAMGFLLLFD-LTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHHTTTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHHcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4689999999532 25678889999998877654 43322222 23333333322 5789999999
Q ss_pred cCcccCc
Q 006958 212 KLDLMDK 218 (624)
Q Consensus 212 K~D~~~~ 218 (624)
|+|+.+.
T Consensus 136 K~Dl~~~ 142 (195)
T 3bc1_A 136 KSDLEDQ 142 (195)
T ss_dssp CTTCGGG
T ss_pred Ccccccc
Confidence 9999764
No 44
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.42 E-value=4.9e-14 Score=132.35 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..++|+|+|.+|+|||||+|+|+|..+.+......|...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~----------------------------------------- 46 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF----------------------------------------- 46 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEE-----------------------------------------
Confidence 578999999999999999999999876221111111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~-- 191 (624)
....+.+ ......+.||||||.... ..+...|++.+|++|+++. ++.......
T Consensus 47 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 101 (181)
T 3tw8_B 47 ----------KIRTVEI-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYD-VTSAESFVNVK 101 (181)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 0001111 111146899999994332 2335578899998777554 443222222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 -~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..+.... .+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 102 RWLHEINQNC-DDVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHC-TTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHhC-CCCCEEEEEECCCCchh
Confidence 232233332 36899999999998754
No 45
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.42 E-value=3.1e-13 Score=129.94 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|.+|||||||+++|++..+.+.... |. .+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~-~~~~~------------------------------------- 46 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TV-GIDFK------------------------------------- 46 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCC--CC-SEEEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--cc-ceeEE-------------------------------------
Confidence 457999999999999999999999876322111 10 00000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
...+.+ ......+.||||||... +..+...|++++|++|+++. ++..... .
T Consensus 47 -----------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 100 (203)
T 1zbd_A 47 -----------VKTIYR-NDKRIKLQIWDTAGLER-------------YRTITTAYYRGAMGFILMYD-ITNEESFNAVQ 100 (203)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTGGGCSEEEEEEE-TTCHHHHHHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEECCCchh-------------hcchHHHhhcCCCEEEEEEE-CcCHHHHHHHH
Confidence 001111 11124689999999532 25667889999998777654 4332221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+......+.|+++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 2333444445567899999999999764
No 46
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.42 E-value=5.8e-13 Score=126.98 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|.+|+|||||+|+|++..+.+...... ... ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~--~~------------------------------------- 63 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVE--FS------------------------------------- 63 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEE--EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-cee--EE-------------------------------------
Confidence 45689999999999999999999987632211100 000 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
...+.+ ......+.||||||.... ..+...|++++|++|+++. ++..... .
T Consensus 64 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D-~~~~~s~~~~~ 117 (193)
T 2oil_A 64 -----------TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFD-LTKHQTYAVVE 117 (193)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEE-TTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 001111 112246899999996542 3346678999998777654 4432221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+......+.++++|+||+|+.+.
T Consensus 118 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 118 RWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 2333334344457899999999999764
No 47
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.42 E-value=2.5e-13 Score=127.60 Aligned_cols=156 Identities=13% Similarity=0.181 Sum_probs=83.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|.+|||||||+++|++..+.+......+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~------------------------------------------- 43 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA------------------------------------------- 43 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCC-------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccce-------------------------------------------
Confidence 4579999999999999999999998752211111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
......+.+.+.....+.||||||. +.+..+...|++.+|++|+++...+ .... .
T Consensus 44 --------~~~~~~~~~~~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 101 (182)
T 1ky3_A 44 --------DFLTKEVTVDGDKVATMQVWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVTN-ASSFENIK 101 (182)
T ss_dssp --------SCEEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTC-HHHHHTHH
T ss_pred --------EEEEEEEEEcCCcEEEEEEEECCCC-------------hHhhhhhHHHhhcCCEEEEEEECCC-hHHHHHHH
Confidence 0001111111122356899999993 2235567789999998877664433 2211 2
Q ss_pred HHHHHHHHh----CCCCCceEEEeccCcccCccc-----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 191 DAIKLAREV----DPTGERTFGVLTKLDLMDKGT-----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 191 ~~~~l~~~~----d~~~~rti~VltK~D~~~~~~-----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
.++..+... ...+.|+++|+||+|+.+... +..++.. ......|+.+++.++.++++.+..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAINVDTAFEEIAR 174 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---hcCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 222222222 225789999999999964321 1122221 122345677777666666555544433
No 48
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.41 E-value=7.1e-13 Score=144.19 Aligned_cols=128 Identities=17% Similarity=0.299 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+++|.+|+|||||+|+|+|.+. ..++..|....
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~-----~~~~~~~gtt~------------------------------------- 231 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER-----VIVSNVAGTTR------------------------------------- 231 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECC-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc-----cccCCCCCeEE-------------------------------------
Confidence 568999999999999999999999864 22333331100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHH-HHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENM-VRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~-~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
. .....+.+ +...++||||||+.+....... .+.+..+ ...|++.+|+++++ +++...+..++.
T Consensus 232 ------~--~~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~---~e~~~~~~~~~~~~~ad~~llv-iD~~~~~~~~~~ 296 (456)
T 4dcu_A 232 ------D--AVDTSFTY---NQQEFVIVDTAGMRKKGKVYET---TEKYSVLRALKAIDRSEVVAVV-LDGEEGIIEQDK 296 (456)
T ss_dssp ------C--TTSEEEEE---TTEEEEETTGGGTTTBTTBCCC---CSHHHHHHHHHHHHHCSEEEEE-EETTTCCCHHHH
T ss_pred ------E--EEEEEEEE---CCceEEEEECCCCCcCcccchH---HHHHHHHHHHHHHhhCCEEEEE-EeCCCCcCHHHH
Confidence 0 00111111 2247999999998765432211 2222332 34688999977665 555555554443
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.++..+...+.++|+|+||+|+.+..
T Consensus 297 -~~~~~~~~~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 297 -RIAGYAHEAGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp -HHHHHHHHTTCEEEEEEECGGGSCCC
T ss_pred -HHHHHHHHcCCCEEEEEEChhcCCCc
Confidence 35555545689999999999998654
No 49
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2.8e-13 Score=130.64 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=91.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||+++|++..+ +...+.+....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~----------------------------------------- 62 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVD----------------------------------------- 62 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCcccee-----------------------------------------
Confidence 456999999999999999999998875 32221110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~ 191 (624)
.....+.+. .....+.||||||.. .+..+...|++.+|++|+++...+.. + ....
T Consensus 63 ---------~~~~~~~~~-~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~ 119 (201)
T 2ew1_A 63 ---------FMIKTVEIN-GEKVKLQIWDTAGQE-------------RFRSITQSYYRSANALILTYDITCEESFRCLPE 119 (201)
T ss_dssp ---------EEEEEEEET-TEEEEEEEEEECCSG-------------GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ---------EEEEEEEEC-CEEEEEEEEECCCcH-------------HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 000011111 112468999999942 23567788999999887766443321 1 1134
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
++..++...+.+.++++|+||+|+.+.... ...+. ...+..|+.+++.++.++++.+..+..
T Consensus 120 ~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 120 WLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFS----EAQDMYYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 455555566667899999999999754321 11111 122345666666665655554444433
No 50
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.41 E-value=2.1e-13 Score=132.74 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=65.7
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc---cHHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---TSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~---~~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.||||||..... .+...|+..+|++|+++. ++.... ...++..+....+.+.++++|+||
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 126 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFD-VTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 458999999954422 234567889998777654 443221 223444555555667899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHH
Q 006958 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRK 260 (624)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (624)
+|+.+......+.........+..|+.+++.++.++++.+..+.....
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp TTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 999765322112111112233456778888777777766665555443
No 51
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.41 E-value=3.1e-13 Score=129.37 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=55.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC-CCCceEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP-TGERTFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~-~~~rti~VltK~D 214 (624)
..+.||||||.... ..+...|++.+|++|+++ +++..........+...+.. .+.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVF-DISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 46899999994331 335678899999877755 44433222222222222211 2489999999999
Q ss_pred ccCcccc---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 215 LMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 215 ~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
..+.... ..+++. ..+..|+.+++.++.++.+.+..+
T Consensus 159 ~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l 198 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQ----DNNLLFIQTSAKTGTNIKNIFYML 198 (208)
T ss_dssp CC-CCSCHHHHHHHHH----HTTCEEEEECTTTCTTHHHHHHHH
T ss_pred cccccCCHHHHHHHHH----HcCCcEEEEecCCCCCHHHHHHHH
Confidence 3222211 222222 123456666666555555444433
No 52
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.41 E-value=3.7e-13 Score=124.98 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=73.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
..+|+|+|.+|+|||||+|+|++..+.+.... |...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~------------------------------------------ 41 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP--TIGA------------------------------------------ 41 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC--CCSE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceeE------------------------------------------
Confidence 46899999999999999999999875322111 0000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SD 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~ 191 (624)
+.....+.+ ......+.+|||||.... ..+...|++.+|++|+++. ++..... ..
T Consensus 42 -------~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~ 99 (170)
T 1z0j_A 42 -------SFMTKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYD-ITKEETFSTLKN 99 (170)
T ss_dssp -------EEEEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEE-TTCHHHHHHHHH
T ss_pred -------EEEEEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEE-CcCHHHHHHHHH
Confidence 000001111 111246899999996432 3456678999998777654 4432222 23
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..++.......++++|+||+|+.+.
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccc
Confidence 444455555567889999999999764
No 53
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.41 E-value=3.3e-13 Score=129.79 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=88.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|||||||+|+|++..+.+......+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~-------------------------------------------- 59 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG-------------------------------------------- 59 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccc--------------------------------------------
Confidence 456999999999999999999999875221111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
.......+.+ ......+.||||||. +.+..+...|++.+|++|+++...+ .... .
T Consensus 60 -------~~~~~~~~~~-~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 117 (200)
T 2o52_A 60 -------VEFGSRVVNV-GGKTVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVYDITS-RETYNSLA 117 (200)
T ss_dssp -------CCEEEEEEEE-TTEEEEEEEECCTTH-------------HHHSCCCHHHHTTCSEEEEEEETTC-HHHHHTHH
T ss_pred -------ceeEEEEEEE-CCeeeEEEEEcCCCc-------------HhHHHHHHHHhccCCEEEEEEECcC-HHHHHHHH
Confidence 0000011111 111247899999993 2334456788999998877664433 2211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.++..+......+.|+++|+||+|+.+... . ...+.. ..+..|+.+.+.++.++++.+..+....
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ----ENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 233334444556789999999999975432 1 122221 2334577777777777666665554443
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.41 E-value=2.4e-13 Score=131.65 Aligned_cols=159 Identities=18% Similarity=0.209 Sum_probs=93.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+|+|++|+|||||+++|++..+.+.....++.-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 57 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF----------------------------------------- 57 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-----------------------------------------
Confidence 567999999999999999999999876322111111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~-~~~ 191 (624)
....+.+. .....+.||||||.... ..+...|++.+|++|+++...+.. +. ...
T Consensus 58 ----------~~~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 113 (213)
T 3cph_A 58 ----------KIKTVDIN-GKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIKQ 113 (213)
T ss_dssp ----------EEEEEEET-TEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEEC-CEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 00011111 11146899999995432 234567889999887766543321 11 123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcccc---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKE 261 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (624)
++..+....+.+.|+++|+||+|+.+.... ..++.. ..+..|+.+.+.++.++.+.+..+.....+
T Consensus 114 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 114 WFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH----HHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 444455555567899999999999543221 122221 223467777777777766666655554433
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.41 E-value=7.7e-13 Score=124.80 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=89.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 58 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 58 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEE-------------------------------------
Confidence 456899999999999999999998875 322222221111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
+.+ ......+.||||||... +..+...|++.+|++|+++...+. ... .
T Consensus 59 --------------~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 109 (187)
T 2a9k_A 59 --------------VVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEM-ESFAATA 109 (187)
T ss_dssp --------------EEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCH-HHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEEECcCH-HHHHHHH
Confidence 001 11124689999999432 145677889999988776544332 111 1
Q ss_pred HHHH-HHHHhCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 191 DAIK-LAREVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 191 ~~~~-l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.++. +.+.....+.|+++|+||+|+.+.... ..++.. ..+..|+.+.+.++.++++.+..+....
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE----QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH----HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2222 333344457899999999999764321 222221 2233455555555555555554444433
No 56
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.41 E-value=3.1e-13 Score=136.95 Aligned_cols=151 Identities=20% Similarity=0.272 Sum_probs=87.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
-+.|+++|.+|+|||||+|+|+|..+ +.+.- .+|.-+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~----------------------------------------- 40 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVER----------------------------------------- 40 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEE-----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEE-----------------------------------------
Confidence 36899999999999999999999874 32211 111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a~~d~~~~~ 191 (624)
..-.+.. +..++.||||||+.+........... +.+...|+ +++|++|+++...+ ...
T Consensus 41 ------------~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~----~~~ 100 (274)
T 3i8s_A 41 ------------KEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASN----LER 100 (274)
T ss_dssp ------------EEEEEEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGG----HHH
T ss_pred ------------EEEEEEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCC----hHH
Confidence 1111222 23568999999988755322112222 23445565 78998877665443 223
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccc---cHHHHHhCcccccCCCeeEEEeCChhhhccC
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (624)
.+.+..++...+.|+++|+||+|+.+... +...+. ..++.+++.+++.++.+++++
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~----~~lg~~~i~~SA~~g~gi~el 159 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALS----ARLGCPVIPLVSTRGRGIEAL 159 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHH----HHHTSCEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHH----HhcCCCEEEEEcCCCCCHHHH
Confidence 33344444445799999999999975432 222221 123345666666666655443
No 57
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.40 E-value=2.8e-13 Score=136.86 Aligned_cols=149 Identities=20% Similarity=0.303 Sum_probs=88.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
.+.|+++|++|+|||||+|+|+|..+.. + ..|
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v-~-----~~p------------------------------------------ 34 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV-G-----NWP------------------------------------------ 34 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC-C-----SSS------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-c-----CCC------------------------------------------
Confidence 4689999999999999999999976421 1 112
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~~~ 192 (624)
|.+.+.....+.. ...+.+|||||..+..... .. +.+...|+. ++|++|+++...+ ....
T Consensus 35 -----g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~vi~V~D~t~----~e~~ 96 (272)
T 3b1v_A 35 -----GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS----PE---AKVARDYLLSQRADSILNVVDATN----LERN 96 (272)
T ss_dssp -----CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS----HH---HHHHHHHHHTTCCSEEEEEEEGGG----HHHH
T ss_pred -----CCcEEEEEEEEec--CCeEEEEECCCcCccCCCC----hH---HHHHHHHHhcCCCCEEEEEecCCc----hHhH
Confidence 0111111111222 4679999999987653221 11 345666775 6998777654433 1223
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccc---cHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
+.+..++...+.|+++|+||+|+..... +...+.. .++.+++.+++.++.++++++.
T Consensus 97 ~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~----~lg~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 97 LYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY----HLGVPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp HHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH----HHTSCEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH----HcCCCEEEEEccCCCCHHHHHH
Confidence 3344444446899999999999875421 2222211 2345666666666666654444
No 58
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=130.28 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=88.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||+++|++..| +... .|+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~-----~~t---------------------------------------- 61 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQ-----GST---------------------------------------- 61 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCCC-----CCC----------------------------------------
Confidence 456899999999999999999998875 2111 010
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~ 191 (624)
.+.......+.+. .....+.||||||..+ +..+...|++++|++|+++...+.. + ....
T Consensus 62 -----~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 122 (201)
T 2hup_A 62 -----IGVDFTMKTLEIQ-GKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAILAYDITKRSSFLSVPH 122 (201)
T ss_dssp --------CEEEEEEEET-TEEEEEEEECCTTCGG-------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHH
T ss_pred -----cceEEEEEEEEEC-CEEEEEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 0000000111111 1124689999999432 2567788999999887766443321 1 1123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccc----cHHHHHhCcccccCC-CeeEEEeCChhhhccCCcHHHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
++..+......+.|+++|+||+|+.+... +..++.. ..+. .|+.+.+.++.++++.+..+..
T Consensus 123 ~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 123 WIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAE----HYDILCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH----HTTCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHH----HcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 44444444456789999999999976422 1222222 1223 4555666555555555544443
No 59
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.40 E-value=2.7e-13 Score=126.96 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=86.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..++|+|+|++|+|||||+|+|++..+.+......+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-------------------------------------------- 41 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-------------------------------------------- 41 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--------------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------------------------------------------
Confidence 457999999999999999999998875211110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
.+.....+.+. .....+.||||||... +..+...|++.+|++++++...+ .... .
T Consensus 42 -------~~~~~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~ 99 (177)
T 1wms_A 42 -------VEFLNKDLEVD-GHFVTMQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFSVDD-SQSFQNLS 99 (177)
T ss_dssp -------EEEEEEEEEET-TEEEEEEEEECCCCGG-------------GHHHHGGGGTTCSEEEEEEETTC-HHHHHTHH
T ss_pred -------eeEEEEEEEEC-CEEEEEEEEeCCCchh-------------hhhhHHHHHhcCCEEEEEEECcC-HHHHHHHH
Confidence 00000111111 1124689999999432 25667789999998777654433 2211 2
Q ss_pred HHHHHHHHhC----CCCCceEEEeccCcccCcccc---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 191 DAIKLAREVD----PTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 191 ~~~~l~~~~d----~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
.++..+.... ..+.|+++|+||+|+.+.... ..++.. .....+|+.+++.++.++++.+..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 100 NWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR---DNGDYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH---HTTCCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH---hcCCceEEEEeCCCCCCHHHHHHHH
Confidence 2333222222 257899999999999743322 222222 1223456666666666655444433
No 60
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.40 E-value=5.3e-13 Score=125.21 Aligned_cols=125 Identities=20% Similarity=0.275 Sum_probs=73.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|+++|.+|||||||+|+|+|..+ + .++..|
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~-~----~~~~~~------------------------------------------- 36 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREA-A----IVTDIA------------------------------------------- 36 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC-S----CCCSST-------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-c----eeeCCC-------------------------------------------
Confidence 5899999999999999999999764 1 112122
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATSDAIK 194 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~~~~~~ 194 (624)
+.+..+.. -.+.+ +...+.+|||||+...... ...........|++.+|++++++...+. ......++.
T Consensus 37 ~~t~~~~~--~~~~~---~~~~~~l~Dt~G~~~~~~~-----~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~ 106 (172)
T 2gj8_A 37 GTTRDVLR--EHIHI---DGMPLHIIDTAGLREASDE-----VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWP 106 (172)
T ss_dssp TCCCSCEE--EEEEE---TTEEEEEEECCCCSCCSSH-----HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCH
T ss_pred Cceeceee--EEEEE---CCeEEEEEECCCcccchhH-----HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHH
Confidence 00000000 01111 1235899999998643211 1211112234678999987776544332 222334444
Q ss_pred HHHHhCCCCCceEEEeccCcccCc
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+....+.+.|+++|+||+|+.+.
T Consensus 107 ~~~~~~~~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 107 EFIARLPAKLPITVVRNKADITGE 130 (172)
T ss_dssp HHHHHSCTTCCEEEEEECHHHHCC
T ss_pred HHHHhcccCCCEEEEEECccCCcc
Confidence 455555567899999999999643
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.40 E-value=2.5e-13 Score=129.50 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=86.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||+++|++..+.+......+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 55 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-------------------------------------------- 55 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CC--------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------------------------------------------
Confidence 445899999999999999999999876322111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~ 191 (624)
.+.....+.+. .....+.||||||.... ..+...|++++|++|+++...+.. + ....
T Consensus 56 -------~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 114 (191)
T 2a5j_A 56 -------VEFGARMVNID-GKQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTS 114 (191)
T ss_dssp -------SSEEEEEEEET-TEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -------ceeEEEEEEEC-CEEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 00001111111 11246899999994332 234567889999887766543321 1 1123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
++..+......+.++++|+||+|+.+.... ...+.. ..+..|+.+.+.++.++++.+..+.
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR----EHGLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH----HHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 444444444567899999999999754221 112211 1233455566555555554444433
No 62
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.40 E-value=4.4e-13 Score=148.53 Aligned_cols=165 Identities=18% Similarity=0.251 Sum_probs=94.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcc--cccccccccccEEEEEEeCCCCCcceeeccCCCCcc-CChHHHHHHHHHH
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFL--PRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKF-TDFAAVRKEISDE 110 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~l--P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~i~~~ 110 (624)
..|.|+|+|.+|||||||+|+|+|.++. +.+..++|.+.+.+. ..+.+ ... ++... .+.. ..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~--~~~~~----~i~--~g~~l~~~~~---~~---- 128 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM--HGETE----GTV--PGNALVVDPE---KP---- 128 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEE--CCSSS----EEE--CCC----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEE--ECCcc----ccc--CCceeeecCc---cc----
Confidence 6799999999999999999999999864 466666665554443 11110 000 00000 0000 00
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHH--HHHHHHHhhcCCCEEEEEEecCCCccc
Q 006958 111 TDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVED--IENMVRSYVEKPSCIILAISPANQDIA 188 (624)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~--i~~~~~~yi~~~~~iiL~V~~a~~d~~ 188 (624)
...+...+..+....+++.+.++...+++||||||+...... .+.+. +..++..|+..+|++++++.+.+.+..
T Consensus 129 ~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~ 204 (550)
T 2qpt_A 129 FRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS 204 (550)
T ss_dssp ---------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC
T ss_pred HHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC
Confidence 000111122344445555444332347999999998763221 01111 457778899999987776554332343
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 189 TSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 189 ~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.. ...+++.+...+.++++|+||+|+.+.
T Consensus 205 ~~-~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 205 DE-FSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HH-HHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred HH-HHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 33 334667777778899999999999865
No 63
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.40 E-value=5.6e-13 Score=126.73 Aligned_cols=120 Identities=16% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|||||||+|+|++..+.+......+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 54 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG-------------------------------------------- 54 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCS--------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--------------------------------------------
Confidence 456899999999999999999998876221111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHH-HHHHHhhcCCCEEEEEEecCCCc-c-ccH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE-NMVRSYVEKPSCIILAISPANQD-I-ATS 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~-~~~~~yi~~~~~iiL~V~~a~~d-~-~~~ 190 (624)
.+.....+.+. .....+.||||||.. .+. .+...|++++|++|+++...+.. + ...
T Consensus 55 -------~~~~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 113 (189)
T 1z06_A 55 -------VDFRERAVDID-GERIKIQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP 113 (189)
T ss_dssp -------CCEEEEEEEET-TEEEEEEEEECCCSH-------------HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred -------eEEEEEEEEEC-CEEEEEEEEECCCch-------------hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 00000111111 112468999999932 234 66788999999877765443311 1 112
Q ss_pred HHHHHH-HHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLA-REVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~-~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+ +.....+.++++|+||+|+.+.
T Consensus 114 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 114 AWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 333333 3333567899999999999764
No 64
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.40 E-value=8.2e-13 Score=125.54 Aligned_cols=120 Identities=21% Similarity=0.213 Sum_probs=73.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|+|||||+|+|++..+.+......+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 56 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG-------------------------------------------- 56 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC--------------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee--------------------------------------------
Confidence 356899999999999999999999876322111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~ 191 (624)
.+.....+.+ ......+.||||||.... ..+...|++.+|++|+++...+.. + ....
T Consensus 57 -------~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 57 -------IDFKVKTVYR-HDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQD 115 (189)
T ss_dssp -------CEEEEEEEEE-TTEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -------EEEEEEEEEE-CCeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 0000001111 111246899999995432 223567899999877765443321 1 1123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..+......+.|+++|+||+|+.+.
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 444445555567899999999999764
No 65
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.40 E-value=1.7e-13 Score=128.47 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=83.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|+|+|++|+|||||+|+|++..+.+......+.-. .
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~---~--------------------------------------- 52 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF---L--------------------------------------- 52 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---E---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEE---E---------------------------------------
Confidence 5899999999999999999998876222111111111 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc---cHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---TSDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~---~~~~ 192 (624)
...+.+ ......+.||||||.... ..+...|++++|++|+++. ++.... ...+
T Consensus 53 ---------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~ 108 (179)
T 2y8e_A 53 ---------SKTMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYD-ITNTNSFHQTSKW 108 (179)
T ss_dssp ---------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEE-TTCHHHHHTHHHH
T ss_pred ---------EEEEEE-CCeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEE-CCCHHHHHHHHHH
Confidence 000111 111246899999994331 3345678899998777654 433211 1233
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccC
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (624)
+..+....+.+.|+++|+||+|+.+................+..|+.+++.++.++++.
T Consensus 109 ~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp HHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred HHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 33333334457899999999999764321111111001122345666666665554433
No 66
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.40 E-value=8.5e-13 Score=126.90 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=91.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+|+|.+|||||||+|+|++..+ +.....++.......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 54 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 54 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEE-------------------------------------
Confidence 567999999999999999999998875 322222221110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~ 191 (624)
+.+ ......+.||||||... +..+...|+..+|++++++...+.+ + ....
T Consensus 55 --------------~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 106 (206)
T 2bov_A 55 --------------VVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATAD 106 (206)
T ss_dssp --------------EEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 001 11124689999999432 1456778899999887765443321 1 1122
Q ss_pred HHHHH-HHhCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHH
Q 006958 192 AIKLA-REVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRK 260 (624)
Q Consensus 192 ~~~l~-~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (624)
++..+ +.....+.|+++|+||+|+.+.... ..++.. ..+..|+.+++.++.++++.+..+.....
T Consensus 107 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 107 FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE----QWNVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH----HhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 33222 3334457899999999999764321 122221 22345666776666666665555544433
No 67
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.40 E-value=5.4e-13 Score=126.26 Aligned_cols=157 Identities=14% Similarity=0.170 Sum_probs=88.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|+|+|++|||||||+|+|++..+ +.....++.......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 44 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQ--------------------------------------- 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEE---------------------------------------
Confidence 5899999999999999999999875 222222221110000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc--ccHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI--ATSDAI 193 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~--~~~~~~ 193 (624)
+.+ ......+.||||||... +..+...|+..+|++++++...+... ....++
T Consensus 45 ------------~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 98 (189)
T 4dsu_A 45 ------------VVI-DGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYR 98 (189)
T ss_dssp ------------EEE-TTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHH
T ss_pred ------------EEE-CCcEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 001 11123578999999433 23456678888998777654433211 112223
Q ss_pred HHH-HHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 194 KLA-REVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 194 ~l~-~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
..+ ......+.|+++|+||+|+.+........ .......+..|+.+++.++.++++.+..+....
T Consensus 99 ~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 99 EQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQA-QDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp HHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHH-HHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEECccCcccccCHHHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 223 33445578999999999997543221111 100112234667676666666666555554443
No 68
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=2.9e-13 Score=125.55 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=71.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|+|++|||||||+++|++..+.+......+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~------------------------------------------- 40 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF------------------------------------------- 40 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE-------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-------------------------------------------
Confidence 4799999999999999999998875322111111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---H
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---A 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~---~ 192 (624)
....+.+ ......+.+|||||... +..+...|++++|++|+++. ++....... +
T Consensus 41 --------~~~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~ 97 (170)
T 1ek0_A 41 --------LTQRVTI-NEHTVKFEIWDTAGQER-------------FASLAPXYYRNAQAALVVYD-VTKPQSFIKARHW 97 (170)
T ss_dssp --------EEEEEEE-TTEEEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEE-TTCHHHHHHHHHH
T ss_pred --------EEEEEEE-CCEEEEEEEEECCCChh-------------hhhhhhhhhccCcEEEEEEe-cCChHHHHHHHHH
Confidence 0001111 11124689999999432 23456788999998777654 443222222 2
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+..+......+.|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 98 VKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEECCCcccc
Confidence 33333334457899999999999765
No 69
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.39 E-value=1.8e-12 Score=136.34 Aligned_cols=127 Identities=24% Similarity=0.365 Sum_probs=77.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..|.|+++|.+|||||||+|+|+|..+...+...+|+-|+.-
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~-------------------------------------- 219 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY-------------------------------------- 219 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE--------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE--------------------------------------
Confidence 578899999999999999999999875222222233322111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--ccc--
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IAT-- 189 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~-- 189 (624)
.+.+ ++ .++.++||||+... .|.+..+.+... ..++..+|.+++++...+.. ...
T Consensus 220 -------------~i~~--~g-~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~~~ 278 (364)
T 2qtf_A 220 -------------AIPI--NN-RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSDALILVIDSTFSENLLIETL 278 (364)
T ss_dssp -------------EEEE--TT-EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHHHHH
T ss_pred -------------EEEE--CC-EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCCEEEEEEECCCCcchHHHHH
Confidence 1112 22 46899999998652 234456666554 45788999776655433322 111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
..+..+++.+...+.|+|+|.||+|+.+.+
T Consensus 279 ~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 279 QSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 123456667766678999999999998654
No 70
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.39 E-value=4.6e-13 Score=123.91 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=71.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|+|+|++|||||||+|++++..+ +.....++..... .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~-~--------------------------------------- 42 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYR-K--------------------------------------- 42 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEE-E---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEE-E---------------------------------------
Confidence 4799999999999999999998765 2221111111100 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAI 193 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~~ 193 (624)
.+.+ ......+.+|||||.... ..+...|++++|++++++...+.. + ....++
T Consensus 43 -----------~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 97 (167)
T 1c1y_A 43 -----------QVEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLR 97 (167)
T ss_dssp -----------EEES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHH
T ss_pred -----------EEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0001 111246899999995432 234567888899887765443321 1 112233
Q ss_pred H-HHHHhCCCCCceEEEeccCcccCc
Q 006958 194 K-LAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~-l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
. +.+.....+.|+++|+||+|+.+.
T Consensus 98 ~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 98 EQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHhhCcCCCcEEEEEECcccccc
Confidence 2 333344567899999999999764
No 71
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.39 E-value=1.1e-12 Score=141.76 Aligned_cols=165 Identities=17% Similarity=0.250 Sum_probs=92.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|++||++|+|||||+|+|+|..+. .++..|....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~-----~~~~~~gtT~------------------------------------- 211 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV-----IVSNVAGTTR------------------------------------- 211 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE-----EEC--------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce-----eecCCCCcee-------------------------------------
Confidence 5679999999999999999999998762 2222221000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHH-HHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENM-VRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~-~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
+.+...+.. +...++||||||+.+..... +. .+.+..+ ...|++.+|+++++ .+++.....++.
T Consensus 212 ----------d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~--~~-~e~~~~~~~~~~~~~ad~~llv-~D~~~~~s~~~~ 276 (436)
T 2hjg_A 212 ----------DAVDTSFTY-NQQEFVIVDTAGMRKKGKVY--ET-TEKYSVLRALKAIDRSEVVAVV-LDGEEGIIEQDK 276 (436)
T ss_dssp ------------CCEEEEE-TTEEEEETTHHHHTCBTTBC--CC-CSHHHHHHHHHHHHHCSEEEEE-EETTTCCCHHHH
T ss_pred ----------eeeEEEEEE-CCeEEEEEECCCcCcCcccc--ch-HHHHHHHHHHHHHHhCCEEEEE-EcCCcCCcHHHH
Confidence 000001111 12358999999986543321 11 1222222 33688899977665 455555554443
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcccc----HHHHHhCc-ccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGR-SYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
.++..+...+.++++|+||+|+.+.... ..+.+... ......+++.+++.++.++++.+..+.
T Consensus 277 -~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~ 344 (436)
T 2hjg_A 277 -RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII 344 (436)
T ss_dssp -HHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred -HHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHH
Confidence 3555555568999999999999875432 11111111 111123556666666666655444433
No 72
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.39 E-value=1.1e-12 Score=122.91 Aligned_cols=155 Identities=15% Similarity=0.287 Sum_probs=91.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.+.|+|+|++|||||||+++|++..+.+.....+|...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI----------------------------------------- 45 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee-----------------------------------------
Confidence 678999999999999999999999876322211111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.. ..+.+ +...+.+|||||...... +...|+..+|++|+++ +++... ....+
T Consensus 46 --------~~--~~~~~---~~~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d~~i~v~-d~~~~~-~~~~~ 97 (178)
T 2lkc_A 46 --------GA--YQVTV---NDKKITFLDTPGHEAFTT-------------MRARGAQVTDIVILVV-AADDGV-MPQTV 97 (178)
T ss_dssp --------CC--CEEEE---TTEEEEESCCCSSSSSSC-------------SCCSSCCCCCEEEEEE-ETTCCC-CHHHH
T ss_pred --------eE--EEEEe---CCceEEEEECCCCHHHHH-------------HHHHHHhhCCEEEEEE-ECCCCC-cHHHH
Confidence 00 01111 124578999999654322 2346788899877765 444332 34445
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccc-cHHHHHhC-cccccCC----CeeEEEeCChhhhccCCcHHHH
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGT-NALEVLEG-RSYRLQH----PWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~-~~~~l~~----g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
..++.+...+.|+++|+||+|+.+... .....+.. ....... .|+.+++.++.++++.+..+..
T Consensus 98 ~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 98 EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 556666666789999999999986432 22222221 1111122 3555555555666555554443
No 73
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.39 E-value=3e-13 Score=130.44 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|||||||+++|++..+ +......+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~------------------------------------------- 42 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIG------------------------------------------- 42 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSC-------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccc-------------------------------------------
Confidence 457999999999999999999999875 221111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
.+.....+.+. .....+.||||||.... ..+...|++.+|++|+++. ++......
T Consensus 43 -------~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d-~~~~~s~~~~~ 100 (206)
T 2bcg_Y 43 -------VDFKIKTVELD-GKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYD-VTDQESFNGVK 100 (206)
T ss_dssp -------CCEEEEEEEET-TEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred -------ceeEEEEEEEC-CEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEE-CcCHHHHHHHH
Confidence 00000111111 11246899999995432 2335678899998777554 44322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+......+.|+++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 101 MWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 2333444455567899999999999764
No 74
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.39 E-value=3.8e-13 Score=126.95 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=88.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||+|+|++..+ +.....++.... ..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 57 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LK------------------------------------- 57 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EE-------------------------------------
Confidence 456899999999999999999998865 322222211110 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~ 191 (624)
.+.+ ......+.+|||||.... ..+...|++++|++|+++...+.. + ....
T Consensus 58 -------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (183)
T 3kkq_A 58 -------------HTEI-DNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVDR 110 (183)
T ss_dssp -------------EEEE-TTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -------------EEEe-CCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 0000 111234778999994432 334567888899887765443321 1 1122
Q ss_pred HHH-HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeC-ChhhhccCCcHHH
Q 006958 192 AIK-LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR-SQADINKNVDMIA 256 (624)
Q Consensus 192 ~~~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~-s~~~~~~~~~~~~ 256 (624)
++. +.+.....+.|+++|+||+|+.+......+.........+.+|+.+++. ++.++++.+..+.
T Consensus 111 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~ 177 (183)
T 3kkq_A 111 FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177 (183)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHH
Confidence 332 2333456678999999999997643211111111111233567777777 6666655544443
No 75
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.39 E-value=9.4e-13 Score=123.53 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=87.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+|+|.+|||||||+|+|++..+ +.....++......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTK-------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEE--------------------------------------
Confidence 457999999999999999999999865 22222222111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
.+.+ ......+.||||||.... ..+...|++.+|++|+++. ++......
T Consensus 49 -------------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 100 (181)
T 2fn4_A 49 -------------ICSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFA-INDRQSFNEVG 100 (181)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEE-TTCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEe-CCCHHHHHHHH
Confidence 0001 011246889999995432 2335567888998877654 43321111
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 191 DAI-KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 191 ~~~-~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
.++ .+.+.....+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 168 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 222 2334456668899999999999764321011111001122345566666555555554444443
No 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.39 E-value=2.1e-13 Score=126.38 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|||||||+|+|++..+ +.....++.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~------------------------------------------- 39 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIG------------------------------------------- 39 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCS-------------------------------------------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceE-------------------------------------------
Confidence 346899999999999999999998865 221111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~-~~~ 191 (624)
.......+.+ ......+.||||||.... ..+...|++.+|++++++...+.. +. ...
T Consensus 40 -------~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (168)
T 1z2a_A 40 -------VDFLERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAISS 98 (168)
T ss_dssp -------SSEEEEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------EEEEEEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 0000011111 111246899999994332 234567889999877766443321 11 112
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..+.... .+.|+++|+||+|+.+.
T Consensus 99 ~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 99 WREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 332222222 36899999999999764
No 77
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.38 E-value=5.2e-13 Score=125.53 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|+|||||+++|++..+.+......+.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~------------------------------------------- 47 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA------------------------------------------- 47 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCC-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCcee-------------------------------------------
Confidence 3468999999999999999999998762211110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
......+.+ ......+.||||||... +..+...|++.+|++|+++ +++......
T Consensus 48 --------~~~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 104 (181)
T 2efe_B 48 --------AFFSQTLAV-NDATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVF-DVTNQASFERAK 104 (181)
T ss_dssp --------SEEEEEEEE-TTEEEEEEEEECCCSGG-------------GGGGTHHHHTTCSEEEEEE-ETTCHHHHHHHH
T ss_pred --------EEEEEEEEE-CCEEEEEEEEeCCCChh-------------hhhhhHHHhccCCEEEEEE-ECCCHHHHHHHH
Confidence 000001111 11124689999999432 2345667899999877755 444322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.++..+......+.|+++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 23333344444578899999999997643
No 78
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.38 E-value=1.1e-12 Score=124.32 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=74.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+++|+|+|++|||||||+|+++|..+ +.+.. .+|+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~------------------------------------------ 37 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRK------------------------------------------ 37 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTS------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccce------------------------------------------
Confidence 46899999999999999999999875 32211 11111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcC-CCE--EEEEEecCCCcccc-
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK-PSC--IILAISPANQDIAT- 189 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~-~~~--iiL~V~~a~~d~~~- 189 (624)
...+.+ ..+.+|||||+..... .+....+.+..+...|+.. ++. +++.|+++......
T Consensus 38 -----------~~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 38 -----------IIEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp -----------CEEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred -----------eEEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 112222 1699999999754322 2233456677777778765 442 23334554421111
Q ss_pred HHH---------HHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 190 SDA---------IKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 190 ~~~---------~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
..+ ..+.+.+...+.|+++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 111 113333444578999999999998653
No 79
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.38 E-value=2.2e-13 Score=128.51 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||++++++..+ +... .|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~-----~~----------------------------------------- 39 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTF-----IS----------------------------------------- 39 (183)
T ss_dssp EEEEEEEECCCCC-----------------CH-----HH-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCC-----CC-----------------------------------------
Confidence 356899999999999999999998765 2111 11
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
..| .......+.+ ......+.||||||.. .+..+...|++++|++|+++. ++......
T Consensus 40 t~~----~~~~~~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 100 (183)
T 2fu5_C 40 TIG----IDFKIRTIEL-DGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIMLVYD-ITNEKSFDNIR 100 (183)
T ss_dssp HHC----EEEEEEEEEE-TTEEEEEEEEEC----------------------CCTTTTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred ccc----ceeEEEEEEE-CCEEEEEEEEcCCCCh-------------hhhhhHHHHHhcCCEEEEEEE-CcCHHHHHHHH
Confidence 000 0000001111 1112468999999943 234556778999998877654 44322212
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+......+.|+++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 101 NWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp HHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred HHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 2333344444457899999999999764
No 80
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.38 E-value=5.1e-13 Score=124.11 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=79.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+.+|+|+|++|+|||||+++++|..+-.......|.-.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDT------------------------------------------ 39 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CE------------------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCe------------------------------------------
Confidence 46899999999999999999998764111111111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~ 192 (624)
....+.+ ......+.+|||||..... ..+...|++.+|++++++...+.. + ....+
T Consensus 40 ---------~~~~~~~-~~~~~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 97 (169)
T 3q85_A 40 ---------YERRIMV-DKEEVTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 97 (169)
T ss_dssp ---------EEEEEEE-TTEEEEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHH
T ss_pred ---------eeEEEEE-CCeEEEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHHH
Confidence 0001111 1112468899999954321 123445677899877765443321 1 11223
Q ss_pred HHHH-HHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 193 IKLA-REVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 193 ~~l~-~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+..+ +.....+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+.
T Consensus 98 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (169)
T 3q85_A 98 LLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 162 (169)
T ss_dssp HHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHH
Confidence 3222 223334789999999999975432111111111112234566666666655555444433
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=5.4e-13 Score=123.98 Aligned_cols=118 Identities=22% Similarity=0.194 Sum_probs=70.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|+|+|.+|||||||+|+|++..+.+.. ..|... ... .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~-~~~--~------------------------------------ 42 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESY--IPTVED-TYR--Q------------------------------------ 42 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSC--CCCSCE-EEE--E------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccc-cEE--E------------------------------------
Confidence 58999999999999999999998752111 111100 000 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSDAI 193 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~-~~~~~ 193 (624)
.+ ........+.+|||||.... ..+...|++.+|++++++...+.. +. ...++
T Consensus 43 -----------~~-~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 97 (172)
T 2erx_A 43 -----------VI-SCDKSICTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPIY 97 (172)
T ss_dssp -----------EE-EETTEEEEEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHH
T ss_pred -----------EE-EECCEEEEEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHH
Confidence 00 00111245899999995431 456677888999887766444321 11 12233
Q ss_pred HHHHHhCC--CCCceEEEeccCcccCcc
Q 006958 194 KLAREVDP--TGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 194 ~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (624)
..+.+... .+.|+++|+||+|+.+..
T Consensus 98 ~~i~~~~~~~~~~pii~v~nK~Dl~~~~ 125 (172)
T 2erx_A 98 EQICEIKGDVESIPIMLVGNKCDESPSR 125 (172)
T ss_dssp HHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred HHHHHHhCCCCCCCEEEEEEcccccccc
Confidence 33333321 368999999999997643
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.38 E-value=5.1e-13 Score=124.22 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-..|+|+|++|+|||||+|+|++..+... .+|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~------------------------------------------ 40 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIG------------------------------------------ 40 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSS------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc---CCcCc------------------------------------------
Confidence 457899999999999999999998775210 11110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+... .+.+ +...+.+|||||.... ..+...|++++|++|+++. ++....-....
T Consensus 41 -------~~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 94 (171)
T 1upt_A 41 -------FNVE--TVTY---KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVD-SCDRDRIGISK 94 (171)
T ss_dssp -------EEEE--EEEE---TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEE-TTCCTTHHHHH
T ss_pred -------cceE--EEEE---CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 0000 1111 1357899999995432 3445678999998777654 44322222222
Q ss_pred HHHHH-hC---CCCCceEEEeccCcccCcc
Q 006958 194 KLARE-VD---PTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 194 ~l~~~-~d---~~~~rti~VltK~D~~~~~ 219 (624)
.+... +. ..+.|+++|+||+|+.+..
T Consensus 95 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 95 SELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 22222 22 2578999999999997653
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.38 E-value=9.2e-13 Score=121.69 Aligned_cols=111 Identities=18% Similarity=0.252 Sum_probs=70.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
+|+|+|++|+|||||++++++..+ +. ..| |
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~------~~~-------t------------------------------------ 31 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VT------TIP-------T------------------------------------ 31 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SC------CCC-------C------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Cc------ccC-------c------------------------------------
Confidence 699999999999999999998765 21 112 0
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~ 196 (624)
.++.. .. +.. +...+.+|||||... +..+...|++++|++++++. ++....-.....+.
T Consensus 32 --~~~~~--~~--~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~ 90 (164)
T 1r8s_A 32 --IGFNV--ET--VEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVD-SNDRERVNEAREEL 90 (164)
T ss_dssp --SSCCE--EE--EEC-SSCEEEEEECCCCGG-------------GHHHHHHHTTTCSEEEEEEE-TTCGGGHHHHHHHH
T ss_pred --CceeE--EE--EEE-CCEEEEEEEcCCChh-------------hHHHHHHHhccCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 00000 01 111 236799999999532 25677789999998877654 44332222222233
Q ss_pred HHh----CCCCCceEEEeccCcccCc
Q 006958 197 REV----DPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 197 ~~~----d~~~~rti~VltK~D~~~~ 218 (624)
..+ ...+.|+++|+||+|+.+.
T Consensus 91 ~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 91 MRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhchhhcCCeEEEEEECcCCcCC
Confidence 332 2247899999999999764
No 84
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.37 E-value=2.1e-13 Score=131.03 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||+|+|++..+.+.. . | +
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-----~-------t--------------------------------- 60 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENI-S-----A-------T--------------------------------- 60 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccC-C-----C-------C---------------------------------
Confidence 4579999999999999999999998752110 0 0 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~ 191 (624)
.+.+.....+.+. .....+.||||||... +..+...|++.+|++|+++...+.. + ....
T Consensus 61 -----~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~ 121 (199)
T 2p5s_A 61 -----LGVDFQMKTLIVD-GERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE 121 (199)
T ss_dssp ---------CEEEEEEET-TEEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -----ccceeEEEEEEEC-CEEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHH
Confidence 0000011111111 1224689999999432 2556778899999887766443321 1 1123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccC
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
++..++.....+.|+++|+||+|+.+
T Consensus 122 ~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 122 WVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHHHHHC---CCEEEEEECGGGHH
T ss_pred HHHHHHHhcCCCCCEEEEEECccccc
Confidence 44455555556789999999999963
No 85
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.37 E-value=5.1e-13 Score=127.73 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
...++|+|+|++|||||||+++|++..+....... |.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~------------------------------------------ 51 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TV------------------------------------------ 51 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CS------------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-cc------------------------------------------
Confidence 46789999999999999999999998862211111 10
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
++.... +. .....+.||||||.... ..+...|++++|++|+++...+ .......
T Consensus 52 -------~~~~~~----~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~-~~s~~~~ 105 (199)
T 4bas_A 52 -------GYNVET----FE-KGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSD-HLRLCVV 105 (199)
T ss_dssp -------SEEEEE----EE-ETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTC-GGGHHHH
T ss_pred -------ceeEEE----EE-eCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCc-HHHHHHH
Confidence 000000 11 22357999999996432 4456688999998877664443 2222222
Q ss_pred HHHHHHhCC-----------CCCceEEEeccCcccCccc--cHHHHHhCcc--cccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 193 IKLAREVDP-----------TGERTFGVLTKLDLMDKGT--NALEVLEGRS--YRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 193 ~~l~~~~d~-----------~~~rti~VltK~D~~~~~~--~~~~~l~~~~--~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
..+...+.. .+.++|+|+||+|+.+... .+.+.+.... ......|+.+++.++.++++.+..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 222222221 2789999999999986532 1222221000 112224455555555555555444443
Q ss_pred H
Q 006958 258 R 258 (624)
Q Consensus 258 ~ 258 (624)
.
T Consensus 186 ~ 186 (199)
T 4bas_A 186 T 186 (199)
T ss_dssp H
T ss_pred H
Confidence 3
No 86
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.37 E-value=5.8e-13 Score=123.51 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=71.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+|+|++|+|||||+++|++..+.+.... |... ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~-~~--------------------------------------- 43 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQES--TIGA-AF--------------------------------------- 43 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CSSE-EE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccce-EE---------------------------------------
Confidence 45899999999999999999998775221111 1000 00
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---H
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~ 191 (624)
....+.+ ......+.+|||||... +..+...|++.+|++|+++. ++...... .
T Consensus 44 ---------~~~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~ 99 (170)
T 1r2q_A 44 ---------LTQTVCL-DDTTVKFEIWDTAGQER-------------YHSLAPMYYRGAQAAIVVYD-ITNEESFARAKN 99 (170)
T ss_dssp ---------EEEEEEE-TTEEEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEE-TTCHHHHHHHHH
T ss_pred ---------EEEEEEE-CCEEEEEEEEeCCCcHH-------------hhhhhHHhccCCCEEEEEEE-CCCHHHHHHHHH
Confidence 0000111 11124689999999433 24456778999998777654 44322222 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..+......+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 100 WVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccc
Confidence 233333333447889999999999754
No 87
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.37 E-value=6.6e-13 Score=127.65 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=88.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|||||||+|+|++..+ +.....++.... ..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 63 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF-SEGYDPTVENTY-SK------------------------------------- 63 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSCCCCCSEEEE-EE-------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC-CCCCCCccceEE-EE-------------------------------------
Confidence 456899999999999999999999876 222111111110 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.+.+ ......+.||||||.... ..+...|++.+|++|+++...+ ........
T Consensus 64 -------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 115 (201)
T 3oes_A 64 -------------IVTL-GKDEFHLHLVDTAGQDEY-------------SILPYSFIIGVHGYVLVYSVTS-LHSFQVIE 115 (201)
T ss_dssp -------------EEC-----CEEEEEEEECCCCTT-------------CCCCGGGTTTCCEEEEEEETTC-HHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCccch-------------HHHHHHHHhcCCEEEEEEeCCC-HHHHHHHH
Confidence 0000 112346899999995432 2235578899998877654433 22222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 194 KLAREV----DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.+...+ ...+.|+++|+||+|+.+................+..|+.+++.++.++++.+..+....
T Consensus 116 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp HHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 233333 234689999999999975432111111100122334677777777777666555554433
No 88
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.37 E-value=6.3e-13 Score=124.60 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=84.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|||||||+++|++..+ +..... |
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~-t-------------------------------------------- 38 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQ-T-------------------------------------------- 38 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHH-T--------------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCC-c--------------------------------------------
Confidence 346899999999999999999999875 211100 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
.+.......+.+.+.....+.+|||||.... ..+...|++++|++|+++...+. ... .
T Consensus 39 -----~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 99 (178)
T 2hxs_A 39 -----IGLDFFLRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNY-QSFENLE 99 (178)
T ss_dssp -----TTSSEEEEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCH-HHHHTHH
T ss_pred -----eeEEEEEEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCH-HHHHHHH
Confidence 0011111111121111257899999994332 33466789999988776544332 111 2
Q ss_pred HHHHHHHHhCC--CCCc-eEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 191 DAIKLAREVDP--TGER-TFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 191 ~~~~l~~~~d~--~~~r-ti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
.++..+....+ .+.+ +++|+||+|+.+... +...+.. ..+..|+.+++.++.++++.+..+
T Consensus 100 ~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 100 DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ----ENGFSSHFVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH----HHTCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH----HcCCcEEEEeCCCCCCHHHHHHHH
Confidence 23333333211 1345 789999999976422 1222221 223456666666666655444433
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.37 E-value=7.1e-13 Score=122.11 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=84.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|+|+|.+|+|||||+|+|++..+.+.. ..++.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~~~~~~~~----------------------------------------- 41 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-DPTIEDSYR----------------------------------------- 41 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc-CCccceEEE-----------------------------------------
Confidence 47999999999999999999988753221 111111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~ 192 (624)
..+.+ ......+.+|||||.... ..+...|+..+|++++++.. +..... ..+
T Consensus 42 ----------~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~~~ 96 (166)
T 2ce2_X 42 ----------KQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAI-NNTKSFEDIHQY 96 (166)
T ss_dssp ----------EEEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEET-TCHHHHHHHHHH
T ss_pred ----------EEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEEC-CCHHHHHHHHHH
Confidence 00001 111245889999994431 34566788899987776654 332221 222
Q ss_pred HHHHHH-hCCCCCceEEEeccCcccCcccc---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 193 IKLARE-VDPTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 193 ~~l~~~-~d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
+..+.. ....+.|+++|+||+|+.+.... ..++.. ..+.+++.++..++.++++.+..+
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR----SYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH----HHTCCEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHH
Confidence 332333 23347899999999999864322 122221 223456666666666555444433
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1.1e-12 Score=124.33 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-..|+|+|.+|||||||+++|++..+. . ..| |
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-----~~~-------t--------------------------------- 47 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--H-----TSP-------T--------------------------------- 47 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--E-----EEC-------C---------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--c-----CcC-------C---------------------------------
Confidence 4579999999999999999999987751 1 011 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.++... .+.+ +...+.+|||||..+ +..+...|++++|++|+++...+ ...-....
T Consensus 48 -----~~~~~~--~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~ 103 (187)
T 1zj6_A 48 -----IGSNVE--EIVI---NNTRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTD-RERISVTR 103 (187)
T ss_dssp -----SCSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTC-TTTHHHHH
T ss_pred -----CccceE--EEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCC-HHHHHHHH
Confidence 011111 1112 236789999999532 23456778899998877665433 22222222
Q ss_pred HHHHHh-C---CCCCceEEEeccCcccCc
Q 006958 194 KLAREV-D---PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (624)
.+...+ . ..+.|+++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 104 EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 233332 2 357899999999999764
No 91
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.36 E-value=4.8e-13 Score=128.73 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCC---CCCceEEE
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDP---TGERTFGV 209 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~~l~~~~d~---~~~rti~V 209 (624)
..+.||||||. +.+..+...|++++|++|+++. ++..... ..++..+....+ .+.|+++|
T Consensus 73 ~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGS-------------DLYKEQISQYWNGVYYAILVFD-VSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTT-------------HHHHHHHSTTCCCCCEEEEEEE-TTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCc-------------HHHHHHHHHHHhhCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 46899999994 3346678889999998777654 4432221 233334444444 57899999
Q ss_pred eccCcccC
Q 006958 210 LTKLDLMD 217 (624)
Q Consensus 210 ltK~D~~~ 217 (624)
+||+|+.+
T Consensus 139 ~nK~Dl~~ 146 (208)
T 2yc2_C 139 ANKTDLPP 146 (208)
T ss_dssp EECC----
T ss_pred EECcccch
Confidence 99999976
No 92
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.36 E-value=1.5e-13 Score=143.06 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=90.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
+|.|++||.+|||||||+|+|++.++...+...+|..|..-.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~-------------------------------------- 199 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------------------------------------- 199 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE--------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE--------------------------------------
Confidence 678999999999999999999987642222223444441111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC---Cc-ccc-
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN---QD-IAT- 189 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~---~d-~~~- 189 (624)
+..++...++|+||||+...+... ..+ .....++++.++++|+++...+ .+ +..
T Consensus 200 ---------------v~~~~~~~~~l~DtPG~i~~a~~~--~~l----~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~ 258 (342)
T 1lnz_A 200 ---------------VETDDGRSFVMADLPGLIEGAHQG--VGL----GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY 258 (342)
T ss_dssp ---------------EECSSSCEEEEEEHHHHHHHTTCT--TTT----HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHH
T ss_pred ---------------EEeCCCceEEEecCCCCccccccc--chh----HHHHHHHHHhccEEEEEEECCcccccChHHHH
Confidence 112223569999999987643321 111 1223445667998777665543 11 111
Q ss_pred HHHHHHHHHhCC--CCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 190 SDAIKLAREVDP--TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 190 ~~~~~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
..+...+..+.+ ...|.++|+||+|+.+......++.. .......++.+++.+..++++++..+.
T Consensus 259 ~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~--~l~~~~~v~~iSA~tg~gi~eL~~~l~ 325 (342)
T 1lnz_A 259 LTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKE--KLTDDYPVFPISAVTREGLRELLFEVA 325 (342)
T ss_dssp HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHH--HCCSCCCBCCCSSCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHH--HhhcCCCEEEEECCCCcCHHHHHHHHH
Confidence 123334444443 47899999999999865322222222 111113455566665555555444443
No 93
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.36 E-value=5.5e-13 Score=128.44 Aligned_cols=156 Identities=12% Similarity=0.191 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|.+|||||||+++|++..+.+......+.-. .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~------------------------------------- 46 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---L------------------------------------- 46 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---E-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE---E-------------------------------------
Confidence 456899999999999999999999876322111111100 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~ 190 (624)
...+.+ ......+.||||||.... ..+...|++.+|++|+++. ++..... .
T Consensus 47 -----------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 100 (207)
T 1vg8_A 47 -----------TKEVMV-DDRLVTMQIWDTAGQERF-------------QSLGVAFYRGADCCVLVFD-VTAPNTFKTLD 100 (207)
T ss_dssp -----------EEEEES-SSCEEEEEEEEECSSGGG-------------SCSCCGGGTTCSEEEEEEE-TTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHhHHHHHhCCcEEEEEEE-CCCHHHHHHHH
Confidence 000101 111246899999995432 2234578899998777554 4432211 2
Q ss_pred HHHHHHHH-hC---CCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 191 DAIKLARE-VD---PTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 191 ~~~~l~~~-~d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
.++..+.. .. +.+.|+++|+||+|+.+..........-........|+.+++.++.++++.+..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHH
Confidence 23322222 21 2468999999999997433221111110001223445555555555544444333
No 94
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.35 E-value=1.6e-12 Score=123.55 Aligned_cols=151 Identities=16% Similarity=0.204 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.-..|+|+|.+|||||||+|+|++..+.+. ...++......
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~-------------------------------------- 60 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRK-------------------------------------- 60 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEE--------------------------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccc-cCCccceEEEE--------------------------------------
Confidence 345899999999999999999998875221 11111111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
.+.+ ......+.||||||.. .+..+...|++.+|++++++.. +......
T Consensus 61 -------------~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~ 112 (190)
T 3con_A 61 -------------QVVI-DGETCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAI-NNSKSFADIN 112 (190)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEET-TCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCChH-------------HHHHHHHHhhCcCCEEEEEEEC-cCHHHHHHHH
Confidence 0011 1112458999999932 2355667899999988775544 3322222
Q ss_pred HHHHHHHHh-CCCCCceEEEeccCcccCcccc---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHH
Q 006958 191 DAIKLAREV-DPTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 191 ~~~~l~~~~-d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (624)
.++..+... ...+.|+++|+||+|+.+.... ..++.. ..+.+|+.+++.++.++++.+..+
T Consensus 113 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 113 LYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK----SYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp HHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHHHHH
Confidence 233333333 3357899999999999763322 222221 123355555555555554444433
No 95
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.35 E-value=1.7e-12 Score=120.70 Aligned_cols=117 Identities=23% Similarity=0.384 Sum_probs=69.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
+.|+++|++|||||||+|+|+|..+ +.+ ..|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~-----~~~~~----------------------------------------- 36 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIG-----NWPGV----------------------------------------- 36 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-ecc-----CCCCc-----------------------------------------
Confidence 5899999999999999999999864 221 11200
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
++......+.+ +...+.+|||||....... . .-+.+...|+. +++++++++ ++... ....
T Consensus 37 ----t~~~~~~~~~~---~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~-D~~~~---~~~~ 98 (165)
T 2wji_A 37 ----TVEKKEGEFEY---NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIV-DATAL---ERNL 98 (165)
T ss_dssp ----CCCCCEEEEEE---TTEEEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEEEE-ETTCH---HHHH
T ss_pred ----ceeeeEEEEEE---CCcEEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEEEe-cCCch---hHhH
Confidence 00001111111 1256899999997754321 1 11345566765 899776655 44431 1122
Q ss_pred HHHHHhCCCCCceEEEeccCcccC
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (624)
.+..++...+.|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 99 YLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHTTCCEEEEEECHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEchHhcc
Confidence 233333334789999999999864
No 96
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.35 E-value=4.4e-13 Score=135.58 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
..+.|+++|++|||||||+|+|+|..+ +.+.-. +|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~---------------------------------------- 40 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEK---------------------------------------- 40 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEE----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEe----------------------------------------
Confidence 357899999999999999999999875 333211 11111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATS 190 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a~~d~~~~ 190 (624)
.... +.. +...+.||||||+....... .. ..++..|+ .++|++++++...+ . .
T Consensus 41 -----------~~~~--~~~-~~~~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d~vi~v~D~~~-~---~ 95 (271)
T 3k53_A 41 -----------KEGI--MEY-REKEFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNADVIVDIVDSTC-L---M 95 (271)
T ss_dssp -----------EEEE--EEE-TTEEEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCSEEEEEEEGGG-H---H
T ss_pred -----------eEEE--EEE-CCceEEEEeCCCccccccCC----HH---HHHHHHhhhccCCcEEEEEecCCc-c---h
Confidence 0011 111 22458999999988644321 11 23455676 68998777665443 2 2
Q ss_pred HHHHHHHHhCCCC-CceEEEeccCcccCccc---cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 191 DAIKLAREVDPTG-ERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 191 ~~~~l~~~~d~~~-~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
..+.+..++...+ .|+++|+||+|+.+... +...+. ..++.+++.++..++.++.+.+..+.
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg~~~~~~Sa~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMR----KELGVPVIPTNAKKGEGVEELKRMIA 161 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHH----HHHSSCEEECBGGGTBTHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHH----HHcCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3333444443445 89999999999865321 222221 23345666666665555555444443
No 97
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.35 E-value=4e-13 Score=131.03 Aligned_cols=151 Identities=18% Similarity=0.250 Sum_probs=91.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+|||++|+|||||++++++..| +... .|+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f-~~~~-----~~Ti------------------------------------------ 46 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF-DNTY-----QATI------------------------------------------ 46 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-C------------------------------------------------------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC-CCCc-----CCcc------------------------------------------
Confidence 799999999999999999998776 2211 1100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d--~~~~~~~~ 194 (624)
+.......+.+ ......+.||||+|-. .+..+...|++.+++++++....+.. .....|+.
T Consensus 47 ---g~d~~~k~~~~-~~~~v~l~iwDtaGqe-------------~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~ 109 (216)
T 4dkx_A 47 ---GIDFLSKTMYL-EDRTIRLQLWDTAGLE-------------RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWID 109 (216)
T ss_dssp ------CEEEEEEC-SSCEEEEEEECCSCTT-------------TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred ---ceEEEEEEEEe-cceEEEEEEEECCCch-------------hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHH
Confidence 00000111111 1223568899999932 23567788999999888765443321 12234555
Q ss_pred HHHHhCCCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 195 LAREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
.++...+.+.|+|+|.||+|+.+... +..++. ...+..|+.+++.++.++++.+..+.
T Consensus 110 ~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a----~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 110 DVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA----KELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp HHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH----HHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH----HHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 55555555789999999999976432 122222 23345688888877777666554443
No 98
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=3.1e-12 Score=121.71 Aligned_cols=156 Identities=14% Similarity=0.189 Sum_probs=88.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|+|||||+++|++..+.+......+ ..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~----------------------------------------- 51 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VD----------------------------------------- 51 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eE-----------------------------------------
Confidence 346899999999999999999999876322111110 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.....+.+ ......+.||||||.... ..+...|++++|++|+++ +++.........
T Consensus 52 ---------~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~ 107 (195)
T 1x3s_A 52 ---------FKVKTISV-DGNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVY-DVTRRDTFVKLD 107 (195)
T ss_dssp ---------EEEEEEEE-TTEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEE-ETTCHHHHHTHH
T ss_pred ---------EEEEEEEE-CCeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEE-ECcCHHHHHHHH
Confidence 00001111 111246899999995432 234567889999877755 444322222222
Q ss_pred HHHHHhC----CCCCceEEEeccCcccCcccc---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 194 KLAREVD----PTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 194 ~l~~~~d----~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.+...+. ..+.|+++|+||+|+.+.... ..++.. ..+..|+.+.+.++.++++.+..+....
T Consensus 108 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 108 NWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR----KHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp HHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH----HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 2333333 246889999999999654322 222222 2234466666666666655555544433
No 99
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.34 E-value=9.4e-13 Score=125.26 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+..+|+|+|.+|+|||||+|+|+|..+++.... .|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~----------------------------------------- 57 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGF----------------------------------------- 57 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-Cccce-----------------------------------------
Confidence 567999999999999999999999873232211 11111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~-- 191 (624)
.. .. +.. +...+.||||||.... ..+...|++++|++|+++ +++.......
T Consensus 58 --------~~--~~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~ 110 (190)
T 2h57_A 58 --------SI--EK--FKS-SSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVI-DSSDRLRMVVAK 110 (190)
T ss_dssp --------EE--EE--EEC-SSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEE-ETTCHHHHHHHH
T ss_pred --------eE--EE--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEE-ECCCHHHHHHHH
Confidence 00 01 111 1367999999994432 344567899999877755 4443221222
Q ss_pred -HHH-HHHHhCC--CCCceEEEeccCcccCc
Q 006958 192 -AIK-LAREVDP--TGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 -~~~-l~~~~d~--~~~rti~VltK~D~~~~ 218 (624)
++. +.+.... .+.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 221 2222221 47899999999999764
No 100
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.34 E-value=1.4e-12 Score=122.78 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=87.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+|+|++|+|||||+++|++..+ +.....++.... ..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 45 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTF-TK------------------------------------- 45 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccE-EE-------------------------------------
Confidence 457999999999999999999997765 322222222111 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~-- 191 (624)
.+.+ ......+.||||||..... .+...|++.+|++++++...+. .....
T Consensus 46 -------------~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~ 97 (181)
T 3t5g_A 46 -------------LITV-NGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSI-KSFEVIK 97 (181)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCH-HHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCH-HHHHHHH
Confidence 0001 1112468999999965432 2345688899988776544332 11111
Q ss_pred -HH-HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHH
Q 006958 192 -AI-KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 192 -~~-~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
++ .+.+.....+.|+++|+||+|+.+......+.........+..|+.+.+.++.++.+.+..+...
T Consensus 98 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 166 (181)
T 3t5g_A 98 VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166 (181)
T ss_dssp HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 22 23344445578999999999996543211111111112234457777777777766655544433
No 101
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.34 E-value=2.3e-12 Score=121.86 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=87.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-.+|+|+|++|||||||+|++++... .... .|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~-~t~~------------------------------------------ 51 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTIS-PTLG------------------------------------------ 51 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCC-CCSS------------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Cccc-ccCc------------------------------------------
Confidence 356999999999999999999998762 1111 1111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+... .+.+ +...+.+|||||.. ....+...|++++|++++++. ++.........
T Consensus 52 -------~~~~--~~~~---~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 105 (186)
T 1ksh_A 52 -------FNIK--TLEH---RGFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLIWVVD-SADRQRMQDCQ 105 (186)
T ss_dssp -------EEEE--EEEE---TTEEEEEEEECCSH-------------HHHTTGGGGCTTCSEEEEEEE-TTCGGGHHHHH
T ss_pred -------cceE--EEEE---CCEEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEE-CcCHHHHHHHH
Confidence 1100 1111 23578999999943 235566788999998777654 44332223322
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCccc--cHHHHHhCcc-cccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 194 KLAREV----DPTGERTFGVLTKLDLMDKGT--NALEVLEGRS-YRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
.+...+ ...+.|+++|+||+|+.+... +..+.+.... .....+|+.+++.++.++++.+..+....
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 222222 224789999999999976532 1222221100 11122345555555555555555444433
No 102
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.33 E-value=4.3e-12 Score=120.54 Aligned_cols=114 Identities=20% Similarity=0.201 Sum_probs=72.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-.+|+|+|.+|+|||||+|+|++..+ +.... .|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~-~t~~~------------------------------------------ 57 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQF-NEDMI-PTVGF------------------------------------------ 57 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCC-CCCSE------------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCC-CCccC-CCCce------------------------------------------
Confidence 45899999999999999999998875 21111 11000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
+.. . +. .....+.||||||.. .+..+...|++++|++|+++. ++..........
T Consensus 58 -------~~~--~--~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D-~~~~~s~~~~~~ 111 (188)
T 1zd9_A 58 -------NMR--K--IT-KGNVTIKLWDIGGQP-------------RFRSMWERYCRGVSAIVYMVD-AADQEKIEASKN 111 (188)
T ss_dssp -------EEE--E--EE-ETTEEEEEEEECCSH-------------HHHTTHHHHHTTCSEEEEEEE-TTCGGGHHHHHH
T ss_pred -------eEE--E--EE-eCCEEEEEEECCCCH-------------hHHHHHHHHHccCCEEEEEEE-CCCHHHHHHHHH
Confidence 000 0 11 123578999999932 345667889999998877654 443222222222
Q ss_pred HHHHh-C---CCCCceEEEeccCcccCc
Q 006958 195 LAREV-D---PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 195 l~~~~-d---~~~~rti~VltK~D~~~~ 218 (624)
+...+ . ..+.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 22222 2 257899999999999764
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.32 E-value=4.3e-12 Score=123.06 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+|+|++|+|||||+++|++..| +.... +|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~-~~~~~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQT-SITDS----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCC-CCSCE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccC-Cccee-----------------------------------------
Confidence 467999999999999999999998875 22111 11000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHH-HHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN-MVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~-~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
...+.+.+.....+.||||||.. .+.. +...|++.+|++|+++...+..-.....
T Consensus 43 -----------~~~~~~~~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 98 (214)
T 2fh5_B 43 -----------SAIYKVNNNRGNSLTLIDLPGHE-------------SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98 (214)
T ss_dssp -----------EEEEECSSTTCCEEEEEECCCCH-------------HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHH
T ss_pred -----------eEEEEecCCCccEEEEEECCCCh-------------hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHH
Confidence 00011212123579999999943 2344 7778999999887766443311111122
Q ss_pred HH----HHHH--hCCCCCceEEEeccCcccCcc
Q 006958 193 IK----LARE--VDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 193 ~~----l~~~--~d~~~~rti~VltK~D~~~~~ 219 (624)
.. ++.. ....+.|+++|+||+|+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 99 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 22 2221 234578999999999998654
No 104
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=4e-12 Score=121.58 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||+++|++..+.+.. ..++... ..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~--~~------------------------------------- 66 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DPTLEST--YR------------------------------------- 66 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEE--EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc-CCCCCce--EE-------------------------------------
Confidence 3568999999999999999999998762211 1111000 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~ 191 (624)
..+.+ ......+.||||||... ..+...|++.+|++|+++...+.+ + ....
T Consensus 67 ------------~~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 119 (196)
T 2atv_A 67 ------------HQATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLP 119 (196)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHHH
Confidence 00001 11124689999999643 344667888999887766543321 1 1122
Q ss_pred HHHHHHH-hCCCCCceEEEeccCcccCc
Q 006958 192 AIKLARE-VDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~-~d~~~~rti~VltK~D~~~~ 218 (624)
++..+.. ....+.|+++|+||+|+.+.
T Consensus 120 ~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 120 LKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 3333333 34457899999999999764
No 105
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.31 E-value=2.9e-12 Score=136.93 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=92.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+|+|..|+|||||+|+|+|.++.+ ++..|
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~-----~~~~~----------------------------------------- 66 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSI-----VSDYA----------------------------------------- 66 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCc-----cCCCC-----------------------------------------
Confidence 56799999999999999999999987622 12121
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
| .+.++....+...+...+.||||||+......++ .. ...+..|+..+|++|+++ +++..-....++
T Consensus 67 --g----tT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~-~~-----~~~~~~~l~~aD~vllVv-D~~~~~~~~~~l 133 (423)
T 3qq5_A 67 --G----TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGR-LR-----VEKARRVFYRADCGILVT-DSAPTPYEDDVV 133 (423)
T ss_dssp ---------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCC-CC-----HHHHHHHHTSCSEEEEEC-SSSCCHHHHHHH
T ss_pred --C----eeeeeEEEEEEECCCCeEEEEECcCCCcccchhH-HH-----HHHHHHHHhcCCEEEEEE-eCCChHHHHHHH
Confidence 0 0111111112222233799999999876433211 11 223567889999877755 553222223344
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
..+++ .+.|+++|+||+|+.+.... +.........+..++.+++.++.++++.+..+....
T Consensus 134 ~~l~~---~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 134 NLFKE---MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp HHHHH---TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHh---cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44444 47899999999999876543 222211223345677777777777666665555443
No 106
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.31 E-value=4.6e-12 Score=121.28 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|+.|||||||++++.|. +.+.. |.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~----~~------------------------------------------- 50 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK-MSPNE----TL------------------------------------------- 50 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC-CCGGG----GG-------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc-CCCcc----ee-------------------------------------------
Confidence 6779999999999999999999986 32210 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHH---HHhhcCCCEEEEEEecCCCc-ccc
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMV---RSYVEKPSCIILAISPANQD-IAT 189 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~---~~yi~~~~~iiL~V~~a~~d-~~~ 189 (624)
+..++...+...+.+.....+.||||||..+. ..+. ..|++++|++|+++...+.. -..
T Consensus 51 ----~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 113 (196)
T 3llu_A 51 ----FLESTNKIYKDDISNSSFVNFQIWDFPGQMDF-------------FDPTFDYEMIFRGTGALIYVIDAQDDYMEAL 113 (196)
T ss_dssp ----GCCCCCSCEEEEECCTTSCCEEEEECCSSCCT-------------TCTTCCHHHHHHTCSEEEEEEETTSCCHHHH
T ss_pred ----eeccccceeeeeccCCCeeEEEEEECCCCHHH-------------HhhhhhcccccccCCEEEEEEECCCchHHHH
Confidence 01122233333344445578999999995432 1122 57889999887766544321 111
Q ss_pred HHHHHHHHHh--CCCCCceEEEeccCcccCc
Q 006958 190 SDAIKLAREV--DPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 190 ~~~~~l~~~~--d~~~~rti~VltK~D~~~~ 218 (624)
..+..++..+ ...+.++++|+||+|+.+.
T Consensus 114 ~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 114 TRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 2233344443 2347899999999998764
No 107
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=2.3e-12 Score=121.42 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-.+|+|+|++|||||||++++++..+.+.. |
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------~----------------------------------------- 48 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK-------P----------------------------------------- 48 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-------S-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC-------C-----------------------------------------
Confidence 4579999999999999999999987651100 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+.++... .+.+ +...+.+|||||.... ..+...|++++|++++++. ++.........
T Consensus 49 ----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 105 (183)
T 1moz_A 49 ----TIGFNVE--TLSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVD-STDKDRMSTAS 105 (183)
T ss_dssp ----STTCCEE--EEEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEE-TTCTTTHHHHH
T ss_pred ----cCccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 0111111 1111 2367899999996542 2335678899998777554 43332223333
Q ss_pred HHHHHhC----CCCCceEEEeccCcccCc
Q 006958 194 KLAREVD----PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d----~~~~rti~VltK~D~~~~ 218 (624)
.+...+. ..+.|+++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 106 KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 3333332 357899999999999764
No 108
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.1e-12 Score=128.51 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||+++|++..+.+......+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 47 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG-------------------------------------------- 47 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------C--------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------------------------------------------
Confidence 457999999999999999999999876221110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
.......+.+. .....+.||||||.... ..+...|++.+|++|+++ +++......
T Consensus 48 -------~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~-D~~~~~s~~~~~ 105 (223)
T 3cpj_B 48 -------VEFATRTLEIE-GKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVY-DISKSSSYENCN 105 (223)
T ss_dssp -------CSEEEEEEEET-TEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEE-C-CCHHHHHHHH
T ss_pred -------ceeEEEEEEEC-CEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEE-eCCCHHHHHHHH
Confidence 00001111111 11246899999995432 234567889999877755 444322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++.....+.|+++|+||+|+.+.
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 2333444444557899999999999754
No 109
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=123.33 Aligned_cols=150 Identities=12% Similarity=0.151 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||++++++..| +.....++.....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 59 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYS--------------------------------------- 59 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE---------------------------------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceee---------------------------------------
Confidence 345899999999999999999999875 2221111111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
..+.+ ......+.||||||.... ..+ ..|++.+|++|+++...+. ....
T Consensus 60 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~-~~~~~~~~~~ilv~d~~~~-~s~~~~~ 111 (187)
T 3c5c_A 60 ------------SEETV-DHQPVHLRVMDTADLDTP-------------RNC-ERYLNWAHAFLVVYSVDSR-QSFDSSS 111 (187)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCC---C-------------CCT-HHHHTTCSEEEEEEETTCH-HHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCCcc-------------hhH-HHHHhhCCEEEEEEECCCH-HHHHHHH
Confidence 00111 112246889999995431 111 4588999988776544332 1122
Q ss_pred HHHHHHHHhC---CCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeeEEEe-CChhhhccCCcHH
Q 006958 191 DAIKLAREVD---PTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVN-RSQADINKNVDMI 255 (624)
Q Consensus 191 ~~~~l~~~~d---~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~-~s~~~~~~~~~~~ 255 (624)
.++..+.... ..+.|+++|+||+|+.+... +..++.. ..+..|+.+++ .++.++++.+..+
T Consensus 112 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 112 SYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG----RFGCLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH----HHTCEEEECCSSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH----HcCCcEEEEeecCccccHHHHHHHH
Confidence 2222222221 24789999999999975432 1222221 22345666666 5555555444433
No 110
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.30 E-value=2.1e-12 Score=123.41 Aligned_cols=114 Identities=16% Similarity=0.217 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-.+|+|+|++|||||||++++++..+ +. ..+|..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~--~~~t~~------------------------------------------ 62 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIG------------------------------------------ 62 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EE--EEEETT------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-cc--cCCcCc------------------------------------------
Confidence 456899999999999999999998775 21 011111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
+... . +.. +...+.+|||||... +..+...|++++|++|+++. ++.........
T Consensus 63 -------~~~~--~--~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D-~~~~~s~~~~~ 116 (192)
T 2b6h_A 63 -------FNVE--T--VEY-KNICFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVD-SNDRERVQESA 116 (192)
T ss_dssp -------EEEE--E--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEE-TTCGGGHHHHH
T ss_pred -------eeEE--E--EEE-CCEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 0000 1 111 235799999999532 24456778899998877654 44332223232
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCc
Q 006958 194 KLAREV----DPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~ 218 (624)
.+...+ ...+.|+++|+||+|+.+.
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 333322 2247899999999999764
No 111
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.29 E-value=2.1e-12 Score=121.87 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
....+|+|+|.+|+|||||+|+|++..+ ... .| +
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-----~~~--~~-------t-------------------------------- 52 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-----VHT--SP-------T-------------------------------- 52 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-----EEE--EC-------C--------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-----Ccc--CC-------c--------------------------------
Confidence 3567999999999999999999999875 100 00 1
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
.++... .+.+ +...+.||||||..+. ..+...|++++|++|+++. ++........
T Consensus 53 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D-~~~~~s~~~~ 107 (181)
T 2h17_A 53 ------IGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVD-STDRERISVT 107 (181)
T ss_dssp ------SSSSCE--EEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEE-TTCTTTHHHH
T ss_pred ------CceeeE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHHH
Confidence 111111 1222 2367999999996432 3345678999998777654 4433222333
Q ss_pred HHHHHHh-C---CCCCceEEEeccCcccCc
Q 006958 193 IKLAREV-D---PTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (624)
..+...+ . ..+.++++|+||+|+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 2222222 2 357899999999999764
No 112
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=3.2e-12 Score=122.10 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=84.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.-..|+|+|.+|||||||+|+|++..+.+ .. ..|... ... .
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~-~~t~~~-~~~--~---------------------------------- 47 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TY-IPTIED-TYR--Q---------------------------------- 47 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TT-SCCCCE-EEE--E----------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-cc-cCcccc-cee--E----------------------------------
Confidence 45699999999999999999999876521 11 111110 000 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~-~~~ 191 (624)
.+.+ ......+.||||||... +..+...|+..+|++|+++...+.. +. ...
T Consensus 48 -------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (199)
T 2gf0_A 48 -------------VISC-DKSVCTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVFSVTSKQSLEELGP 100 (199)
T ss_dssp -------------EEEE-TTEEEEEEEEECCGGGS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHH
T ss_pred -------------EEEE-CCEEEEEEEEeCCChHH-------------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHH
Confidence 0000 11124689999999432 1456677888999877765443321 11 122
Q ss_pred HHHHHHHhCC--CCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCc
Q 006958 192 AIKLAREVDP--TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (624)
Q Consensus 192 ~~~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (624)
++..+..+.. .+.|+++|+||+|+.+.......... .....+..|+.+++.++.++++.+.
T Consensus 101 ~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 101 IYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-VAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-HHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-HHHHhCCeEEEEecCCCCCHHHHHH
Confidence 3333444332 36799999999999764322111111 0112234566666655555544333
No 113
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.28 E-value=5.3e-12 Score=119.79 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-.+|+|+|++|+|||||+|++++..+ +. ..| |
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~------~~~-------t--------------------------------- 53 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV-VT------TVP-------T--------------------------------- 53 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC-EE------ECS-------S---------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-CC------cCC-------C---------------------------------
Confidence 356899999999999999999998765 11 111 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.++... .+.+ +...+.+|||||..+.. .+...|++++|++|+++.. +.........
T Consensus 54 -----~~~~~~--~~~~---~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~-~~~~s~~~~~ 109 (189)
T 2x77_A 54 -----VGVNLE--TLQY---KNISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVDS-TDRDRMGVAK 109 (189)
T ss_dssp -----TTCCEE--EEEE---TTEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEET-TCCTTHHHHH
T ss_pred -----CceEEE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEeC-CCHHHHHHHH
Confidence 011111 1111 23578999999965422 2244688899988776544 3322222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCc
Q 006958 194 KLAREV----DPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~ 218 (624)
.....+ ...+.|+++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 110 HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 222222 2347899999999999765
No 114
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.28 E-value=8.2e-12 Score=117.96 Aligned_cols=115 Identities=20% Similarity=0.283 Sum_probs=72.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+++|++|||||||+++|++..+ ... .| +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-----~~~--~~-------t--------------------------------- 47 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-----SHI--TP-------T--------------------------------- 47 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-----EEE--EE-------E---------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-----Ccc--cC-------c---------------------------------
Confidence 467999999999999999999999754 100 01 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.++... .+.+ +...+.+|||||... ++.+...|++.+|++++++...+ ........
T Consensus 48 -----~g~~~~--~~~~---~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~ 103 (181)
T 1fzq_A 48 -----QGFNIK--SVQS---QGFKLNVWDIGGQRK-------------IRPYWRSYFENTDILIYVIDSAD-RKRFEETG 103 (181)
T ss_dssp -----TTEEEE--EEEE---TTEEEEEEECSSCGG-------------GHHHHHHHHTTCSEEEEEEETTC-GGGHHHHH
T ss_pred -----CCeEEE--EEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECcC-HHHHHHHH
Confidence 001101 1111 135789999999432 25667789999998877654433 22222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCcc
Q 006958 194 KLAREV----DPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~~ 219 (624)
.+...+ ...+.|+++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 104 QELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 222322 23578999999999997653
No 115
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.28 E-value=1.6e-12 Score=122.52 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=71.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-..|+|+|.+|+|||||++++++..+ +.....++.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 43 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYS---------------------------------------- 43 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEE----------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeE----------------------------------------
Confidence 45899999999999999999998765 2221111111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--H
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--D 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~--~ 191 (624)
..+.+ ......+.||||||.... ..+...|++.+|++|+++...+.. +... .
T Consensus 44 -----------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 98 (186)
T 1mh1_A 44 -----------ANVMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAK 98 (186)
T ss_dssp -----------EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -----------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHH
Confidence 00111 111245789999996432 334556889999887765443321 1111 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..++...+ +.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 99 WYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp HHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHhCC-CCCEEEEeEccccccc
Confidence 3444454444 7899999999999764
No 116
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.28 E-value=3.9e-12 Score=123.68 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-..|+|+|++|+|||||+++|++..+ +.....++.....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 72 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYM---------------------------------------- 72 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEE----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEE----------------------------------------
Confidence 35899999999999999999999875 3221111110000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH----
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---- 190 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---- 190 (624)
..+.+. .....+.||||||.. .+..+...|++++|++|+++. ++......
T Consensus 73 -----------~~~~~~-~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~ 126 (214)
T 2j1l_A 73 -----------VNLQVK-GKPVHLHIWDTAGQD-------------DYDRLRPLFYPDASVLLLCFD-VTSPNSFDNIFN 126 (214)
T ss_dssp -----------EEEEET-TEEEEEEEEEC----------------------------CEEEEEEEEE-TTCHHHHHHHHH
T ss_pred -----------EEEEEC-CEEEEEEEEECCCch-------------hhhHHHHHHhccCCEEEEEEE-CcCHHHHHHHHH
Confidence 001111 112368999999932 235566778999998777654 43321111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++... .+.|+++|+||+|+.+.
T Consensus 127 ~~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 127 RWYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp THHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 2333444443 36899999999999865
No 117
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.28 E-value=9.7e-12 Score=119.10 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=59.9
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHHHHHHHHHhCC-CCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAIKLAREVDP-TGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~-~~~~~~~l~~~~d~-~~~rti~VltK 212 (624)
..+.+|||||.... . ..+...|++.+|++|+++...+.. + ....++..++...+ .+.|+++|+||
T Consensus 72 ~~l~i~Dt~g~~~~---------~---~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDA---------G---GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGG---------G---HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccc---------h---hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 45789999995431 0 225567888999887765443321 1 11233333333332 47899999999
Q ss_pred CcccCccc-c---HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHH
Q 006958 213 LDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 213 ~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+|+.+... . ...+.. ..+..|+.+++.++.++++.+..+.
T Consensus 140 ~Dl~~~~~v~~~~~~~~a~----~~~~~~~e~Sa~~~~~v~~lf~~l~ 183 (195)
T 3cbq_A 140 SDLARSREVSLEEGRHLAG----TLSCKHIETSAALHHNTRELFEGAV 183 (195)
T ss_dssp TTCTTTCCSCHHHHHHHHH----HTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred hhccccCCcCHHHHHHHHH----HhCCEEEEEcCCCCCCHHHHHHHHH
Confidence 99975432 1 122221 2234577777776666655554443
No 118
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.27 E-value=9e-12 Score=119.43 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=68.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||++++++..| +.....++......
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 59 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA-------------------------------------- 59 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE--------------------------------------
Confidence 567999999999999999999999874 32222122111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
.+.+ ......+.||||||..... .+...|+.++|++|+++...+ .....
T Consensus 60 -------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~ 111 (201)
T 2q3h_A 60 -------------VVSV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVS-PSSFQNVS 111 (201)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTC-HHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCC-HHHHHHHH
Confidence 0111 1112357899999965422 234568899998777654433 22212
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 -~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 112 EKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 23333444444 7899999999999764
No 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.27 E-value=1.1e-12 Score=125.11 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||++++++..+ +.....++......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 62 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH-------------------------------------- 62 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE--------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE--------------------------------------
Confidence 446899999999999999999999875 32221111111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc----
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---- 189 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---- 189 (624)
.+.+ ......+.||||||... +..+...|++++|++|+++. ++.....
T Consensus 63 -------------~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 114 (194)
T 3reg_A 63 -------------VMKY-KNEEFILHLWDTAGQEE-------------YDRLRPLSYADSDVVLLCFA-VNNRTSFDNIS 114 (194)
T ss_dssp -------------EEEE-TTEEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcHH-------------HHHHhHhhccCCcEEEEEEE-CCCHHHHHHHH
Confidence 0001 11124579999999432 23456678999998877654 4332211
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCccc--cHHHHHhCcccccCCC-eeEEEeCChhhhccCCcHH
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKGT--NALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMI 255 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~ 255 (624)
..++..++... .+.|+++|+||+|+.+... ...+.........+.. |+.+++.++.++++.+..+
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHH
Confidence 22333444443 3689999999999975321 1111111001122333 6666666666655444433
No 120
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.27 E-value=1.1e-12 Score=128.01 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~---~~~~~l~~~~d~~~~rti~VltK 212 (624)
..+.||||||.... ..+...|++++|++|+++. ++..... ..++..+....+ +.|+++|+||
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK 128 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNK 128 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 46899999994332 2335578889998777654 4432211 234444444432 6899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHH
Q 006958 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (624)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (624)
+|+.+..... + ........+..|+.+++.++.++++.+..+....
T Consensus 129 ~Dl~~~~~~~-~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 129 VDIKDRKVKA-K-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp TTSSSCSSCG-G-GCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred CccccccccH-H-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9997653211 0 0000112234566666665566555555444433
No 121
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.26 E-value=1.7e-12 Score=124.82 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=70.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|+|.+|+|||||++++++..+ +.....++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------- 61 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFEN------------------------------------------- 61 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCC-------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccce-------------------------------------------
Confidence 4899999999999999999999875 22211111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~--~~~ 192 (624)
+. ..+.+ ......+.||||||.... ..+...|++++|++|+++...+. .+.. ..+
T Consensus 62 -----~~---~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 119 (201)
T 2gco_A 62 -----YI---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 119 (201)
T ss_dssp -----CE---EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred -----EE---EEEEE-CCEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 01111 111246899999995332 33455688999987776543332 1111 223
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...++...+ +.|+++|+||+|+.+.
T Consensus 120 ~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 120 TPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp HHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred HHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 444444433 6899999999999865
No 122
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.26 E-value=4.1e-12 Score=120.93 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=58.6
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--c----HHHHHHHHHh--CCCCCceE
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--T----SDAIKLAREV--DPTGERTF 207 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~--~----~~~~~l~~~~--d~~~~rti 207 (624)
..+.||||||... +..+...|++++|++|+++. ++.... + .....++.++ ...+.|++
T Consensus 74 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D-~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pii 139 (198)
T 3t1o_A 74 TRFHLYTVPGQVF-------------YNASRKLILRGVDGIVFVAD-SAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139 (198)
T ss_dssp EEEEEEECCSCCS-------------CSHHHHHHTTTCCEEEEEEE-CCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEE
T ss_pred eEEEEEeCCChHH-------------HHHHHHHHHhcCCEEEEEEE-CCcchhhHhHHHHHHHHHHHHhhccccCCCCEE
Confidence 4689999999542 14566779999998877654 432111 1 1122233443 33578999
Q ss_pred EEeccCcccCccc--cHHHHHhCcccccCC-CeeEEEeCChhhhccCCcHHH
Q 006958 208 GVLTKLDLMDKGT--NALEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIA 256 (624)
Q Consensus 208 ~VltK~D~~~~~~--~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~ 256 (624)
+|+||+|+.+... +..+.+. ..+. .|+.+++.++.++++.+..+.
T Consensus 140 lv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~ 187 (198)
T 3t1o_A 140 IQVNKRDLPDALPVEMVRAVVD----PEGKFPVLEAVATEGKGVFETLKEVS 187 (198)
T ss_dssp EEEECTTSTTCCCHHHHHHHHC----TTCCSCEEECBGGGTBTHHHHHHHHH
T ss_pred EEEEchhcccccCHHHHHHHHH----hcCCceEEEEecCCCcCHHHHHHHHH
Confidence 9999999976422 1223322 2233 455555555555544444333
No 123
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.26 E-value=3.3e-12 Score=120.93 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.-+.|+++|++|||||||+++|+|..+.+.....+|..+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~----------------------------------------- 44 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK----------------------------------------- 44 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccc-----------------------------------------
Confidence 457899999999999999999999764221111111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~~ 191 (624)
.... +.. +...+.+|||||....... ... +.+...|+. .++++++++ ++.. . ..
T Consensus 45 ----------~~~~--~~~-~~~~~~l~Dt~G~~~~~~~----~~~---~~~~~~~~~~~~~~~~i~v~-d~~~-~--~~ 100 (188)
T 2wjg_A 45 ----------KEGE--FEY-NGEKFKVVDLPGVYSLTAN----SID---EIIARDYIINEKPDLVVNIV-DATA-L--ER 100 (188)
T ss_dssp ----------EEEE--EEE-TTEEEEEEECCCCSCCSSS----SHH---HHHHHHHHHHHCCSEEEEEE-EGGG-H--HH
T ss_pred ----------eEEE--EEe-CCcEEEEEECCCcCccccc----cHH---HHHHHHHHhccCCCEEEEEe-cchh-H--HH
Confidence 0011 111 1256899999997654221 111 334455664 588766655 4432 1 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...+...+...+.|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAKS 127 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhcccc
Confidence 233444444467899999999998653
No 124
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.26 E-value=1.5e-11 Score=124.28 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=74.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
.-++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|..+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 79 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM-------------------------------------- 79 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEE--------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEE--------------------------------------
Confidence 457999999999999999999999886433321 12222211
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATS 190 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi--~~~~~iiL~V~~a~~d~~~~ 190 (624)
..+.. +...++||||||+...... ...+...+..|+ ..+|++++++......+...
T Consensus 80 ---------------~~~~~-~~~~l~iiDTpG~~~~~~~------~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~ 137 (270)
T 1h65_A 80 ---------------VSRSR-AGFTLNIIDTPGLIEGGYI------NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNL 137 (270)
T ss_dssp ---------------EEEEE-TTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHH
T ss_pred ---------------EEEee-CCeEEEEEECCCCCCCccc------hHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHH
Confidence 11211 2356999999998764321 122333445554 36887776543222233322
Q ss_pred --HHHHHHHHhCCCC--CceEEEeccCcccCcc
Q 006958 191 --DAIKLAREVDPTG--ERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 --~~~~l~~~~d~~~--~rti~VltK~D~~~~~ 219 (624)
.++..+......+ .++++|+||+|+.++.
T Consensus 138 ~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 138 DKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3333333332222 6899999999997653
No 125
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.26 E-value=4.2e-11 Score=125.96 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+++|.+|||||||+|+|+|..+...+...+|..+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~------------------------------------- 208 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQ------------------------------------- 208 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEE-------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEE-------------------------------------
Confidence 6789999999999999999999998631111112222221100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---cccc-
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIAT- 189 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~---d~~~- 189 (624)
+.. +...+.+|||||+....... ...+. ...+..+...+|+++++++..+. ++..
T Consensus 209 ----------------~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad~illV~D~s~~~~~~~~~~ 267 (357)
T 2e87_A 209 ----------------FED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGNLIIYIFDPSEHCGFPLEEQ 267 (357)
T ss_dssp ----------------EEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCSEEEEEECTTCTTSSCHHHH
T ss_pred ----------------EEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCCEEEEEEeCCccccCCHHHH
Confidence 111 12468999999987643221 11111 23334555678987765543332 2222
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..++..+....+ +.++|+|+||+|+.+.
T Consensus 268 ~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 268 IHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 223333333333 7899999999999764
No 126
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.26 E-value=4.2e-13 Score=128.82 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|.+|+|||||+|+|++..+........|...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 70 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF----------------------------------------- 70 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE-----------------------------------------
Confidence 456899999999999999999999875221111111110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
....+.+ ......+.||||||.... ..+...|++.+|++|+++ +++......
T Consensus 71 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 125 (199)
T 3l0i_B 71 ----------KIRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVY-DVTDQESFNNVK 125 (199)
T ss_dssp ----------EEEEEEE-TTEEEEEEEECCTTCTTC-------------CCCSCC--CCCSEEEECC--CCCSHHHHHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEECCCcHhH-------------HHHHHHHhhcCCEEEEEE-ECCCHHHHHHHH
Confidence 0011111 111246899999994432 223456889999877754 444322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..+....+.+.|+++|+||+|+.+.
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 2333344444557899999999999754
No 127
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2.2e-11 Score=115.86 Aligned_cols=140 Identities=18% Similarity=0.247 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcc
Q 006958 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDY 86 (624)
Q Consensus 7 l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~ 86 (624)
+..+...+...+....... ....+.|+|+|.+|||||||+|+|+|..+.+ ..++..|+.
T Consensus 26 ~~~l~~~l~~~~~~~~~~~------~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~------------ 84 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGG------GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLS------------ 84 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------------
T ss_pred HHHHHHHHHHHHHhhcCCC------CCCCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCce------------
Confidence 3444555555444433211 1257899999999999999999999987522 111112200
Q ss_pred eeeccCCCCccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHH
Q 006958 87 AEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMV 166 (624)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~ 166 (624)
+ .. .....+.+|||||....... +....
T Consensus 85 -----------------------------~--~~------------~~~~~~~l~Dt~G~~~~~~~---------~~~~~ 112 (193)
T 2ged_A 85 -----------------------------A--AD------------YDGSGVTLVDFPGHVKLRYK---------LSDYL 112 (193)
T ss_dssp ---------------------------------C------------CCCTTCSEEEETTCCBSSCC---------HHHHH
T ss_pred -----------------------------e--ee------------ecCCeEEEEECCCCchHHHH---------HHHHH
Confidence 0 00 02367999999997654221 12333
Q ss_pred HHhhcCCCEEEEEEecCCCccccHHHHH----HHHHh---CCCCCceEEEeccCcccCcc
Q 006958 167 RSYVEKPSCIILAISPANQDIATSDAIK----LAREV---DPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 167 ~~yi~~~~~iiL~V~~a~~d~~~~~~~~----l~~~~---d~~~~rti~VltK~D~~~~~ 219 (624)
...+..+|++|+++.............. +.... .+.+.|+++|+||+|+.+..
T Consensus 113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 4445568987776544312111111111 11111 34578999999999998654
No 128
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.25 E-value=9.7e-12 Score=119.37 Aligned_cols=113 Identities=14% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-..|+++|++|||||||++++++..+ +. -.+|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~------------------------------------------ 58 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLH------------------------------------------ 58 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCC------------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCC------------------------------------------
Confidence 456899999999999999999998765 10 000110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.+ ...+.+. ...+.+|||||... .+.+...|++.+|++|+++...+. ..-....
T Consensus 59 -------~~--~~~~~~~---~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~-~s~~~~~ 112 (198)
T 1f6b_A 59 -------PT--SEELTIA---GMTFTTFDLGGHIQ-------------ARRVWKNYLPAINGIVFLVDCADH-ERLLESK 112 (198)
T ss_dssp -------CS--CEEEEET---TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCG-GGHHHHH
T ss_pred -------ce--eEEEEEC---CEEEEEEECCCcHh-------------hHHHHHHHHhcCCEEEEEEECCCH-HHHHHHH
Confidence 11 1112221 26789999999432 234566789999988776654432 2222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccC
Q 006958 194 KLAREV----DPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~ 217 (624)
.+...+ ...+.|+++|+||+|+..
T Consensus 113 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 113 EELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 222222 235789999999999975
No 129
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.24 E-value=1.2e-12 Score=123.11 Aligned_cols=118 Identities=26% Similarity=0.309 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||++++++..+ +... .|+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~-----~~t~~~------------------------------------- 43 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDY-----VPTVFD------------------------------------- 43 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCeeee-------------------------------------
Confidence 457899999999999999999998764 2211 110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS-- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~-- 190 (624)
.+.. .+ .+ ......+.||||||.... ..+...|++++|++++++...+.. +...
T Consensus 44 ------~~~~-~~--~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (182)
T 3bwd_D 44 ------NFSA-NV--VV-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSK 100 (182)
T ss_dssp -------CBC-CC--C--------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------eEEE-EE--EE-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 0000 00 01 112356889999995332 344567889999887765443321 1111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 101 KWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 24444454444 7899999999999764
No 130
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.24 E-value=1.3e-11 Score=117.66 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-..|+++|++|||||||++++++..+ +. -.+|..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~-~~--~~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL-AT--LQPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC-CC--CCCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-Cc--cccCCCCC----------------------------------------
Confidence 456999999999999999999998875 11 01111110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
...+.+ +...+.+|||||.... +.+...|++++|++|+++.. +....-....
T Consensus 59 -----------~~~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~ 110 (190)
T 1m2o_B 59 -----------SEELAI---GNIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDA-ADPERFDEAR 110 (190)
T ss_dssp -----------EEEEEE---TTEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEET-TCGGGHHHHH
T ss_pred -----------eEEEEE---CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEEC-CChHHHHHHH
Confidence 001111 1257899999996442 23456788999988776544 4322222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccC
Q 006958 194 KLAREV----DPTGERTFGVLTKLDLMD 217 (624)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~ 217 (624)
.+...+ ...+.|+++|+||+|+.+
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 222222 235789999999999976
No 131
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.24 E-value=4.9e-12 Score=123.05 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||+++|++..| +.....++.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 65 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYT--------------------------------------- 65 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEE---------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEE---------------------------------------
Confidence 456899999999999999999999875 2211111100000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc--cH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA--TS 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~--~~ 190 (624)
..+.+ ......+.||||||.... ..+...|++++|++|+|+...+.. +. ..
T Consensus 66 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 119 (214)
T 3q3j_B 66 ------------ACLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSALK 119 (214)
T ss_dssp ------------EEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHHT
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHHH
Confidence 00011 112246899999995432 345567899999888766544321 11 13
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 120 ~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 120 KWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp HHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 34555555543 6899999999999763
No 132
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.24 E-value=1.7e-11 Score=126.17 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=72.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
.+|+++|++|||||||+|++++... ...+..|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~-----~~~~~~~------------------------------------------- 35 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS-----AFDTRRL------------------------------------------- 35 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC-----TGGGGGC-------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-----CccccCc-------------------------------------------
Confidence 4799999999999999999998732 1122121
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~~ 192 (624)
|.+.++... .+.+ .+...+.+|||||..+. .......+...|++++|++|+++...+. .... .+
T Consensus 36 ~~Ti~~~~~--~~~~--~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~-~s~~~l~~~ 102 (307)
T 3r7w_A 36 GATIDVEHS--HLRF--LGNMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVEST-EVLKDIEIF 102 (307)
T ss_dssp CCCCSEEEE--EEEE--TTTEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCS-CHHHHHHHH
T ss_pred CCccceEEE--EEEe--CCceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCCh-hhHHHHHHH
Confidence 111111111 1111 22467999999994321 1112245677889999988776654432 2112 22
Q ss_pred HHHHHHhC--CCCCceEEEeccCcccC
Q 006958 193 IKLAREVD--PTGERTFGVLTKLDLMD 217 (624)
Q Consensus 193 ~~l~~~~d--~~~~rti~VltK~D~~~ 217 (624)
..++..+. ..+.|+++|+||+|+.+
T Consensus 103 ~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 103 AKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHHhCCCCeEEEEEecccccc
Confidence 22233321 23689999999999986
No 133
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=6.8e-12 Score=119.59 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=72.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+|+|++|+|||||+++|++..| +.....++.....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 56 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYA---------------------------------------- 56 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeE----------------------------------------
Confidence 45899999999999999999998865 3222111111100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--H
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--D 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~--~ 191 (624)
..+.+ ......+.||||||..+. ..+...|++++|++|+++...+.. +... .
T Consensus 57 -----------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 111 (194)
T 2atx_A 57 -----------VSVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEE 111 (194)
T ss_dssp -----------EEEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -----------EEEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00111 111246899999996432 234567899999887765443321 1111 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..++...+ +.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 112 WVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 3444444433 7899999999999764
No 134
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=1.7e-11 Score=118.99 Aligned_cols=161 Identities=13% Similarity=0.114 Sum_probs=84.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|||++|+|||||+|+++|... .+++..|+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~-----~~~~~~~~---------------------------------------- 70 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD-----SMDSDCEV---------------------------------------- 70 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC-----TTCCC-------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-----CCCCcCCc----------------------------------------
Confidence 456899999999999999999998643 11221220
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~-~~ 191 (624)
.| .......+.+.+ ....+.++||+|... ....+...|.+.++++|++++-.+. .+.. ..
T Consensus 71 -~g----~d~~~~~i~~~~-~~~~l~~~Dt~g~~~------------~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~ 132 (211)
T 2g3y_A 71 -LG----EDTYERTLMVDG-ESATIILLDMWENKG------------ENEWLHDHCMQVGDAYLIVYSITDRASFEKASE 132 (211)
T ss_dssp -CC----TTEEEEEEEETT-EEEEEEEECCTTTTH------------HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHH
T ss_pred -cc----eeeEEEEEEECC-eeeEEEEeecCCCcc------------hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 00 000001111211 123578999999321 1244556788889988776543331 1111 12
Q ss_pred HHHHHHHh-CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 192 AIKLAREV-DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 192 ~~~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
+...+... ...+.|+|+|.||+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 133 ~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 133 LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 22223322 2347899999999999753221111000001122345666666666666555544433
No 135
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=6.2e-12 Score=121.44 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=69.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
..|+|+|.+|||||||+++|++..+ +.....++....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~------------------------------------------ 62 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFENY------------------------------------------ 62 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-C-------CCEE------------------------------------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccceE------------------------------------------
Confidence 4899999999999999999999875 211111110000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDA 192 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~~~ 192 (624)
...+.+. .....+.||||||.... ..+...|++++|++|+++...+.. +.. ..+
T Consensus 63 ---------~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 119 (207)
T 2fv8_A 63 ---------VADIEVD-GKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW 119 (207)
T ss_dssp ---------EEEEEET-TEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTH
T ss_pred ---------EEEEEEC-CEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0001111 11246899999995432 234556889999887765443321 111 223
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+..++...+ +.|+++|+||+|+.+.
T Consensus 120 ~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 120 VPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred HHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 344444433 6899999999999765
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.23 E-value=6e-11 Score=128.29 Aligned_cols=129 Identities=22% Similarity=0.366 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..++|++||++|||||||+|+|+|..+ ..++..|.... +.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-----~~v~~~~gtT~-----------------------------------d~ 218 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-----ALVSPIPGTTR-----------------------------------DP 218 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECCCC-----------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-----cccCCCCCCcC-----------------------------------Cc
Confidence 567999999999999999999999875 22333331110 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHH-HHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI-ENMVRSYVEKPSCIILAISPANQDIATSDA 192 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i-~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~ 192 (624)
. ...+.+. ..++.+|||||+.+..... ++.. +.+ ...+..+++.+|.+++++ ++......++
T Consensus 219 ~----------~~~i~~~---g~~~~l~Dt~G~~~~~~~~-~~~~-e~~~~~~~~~~i~~ad~vllv~-d~~~~~~~~~- 281 (439)
T 1mky_A 219 V----------DDEVFID---GRKYVFVDTAGLRRKSRVE-PRTV-EKYSNYRVVDSIEKADVVVIVL-DATQGITRQD- 281 (439)
T ss_dssp C----------CEEEEET---TEEEEESSCSCC-------------CCSCCHHHHHHHHHCSEEEEEE-ETTTCCCHHH-
T ss_pred e----------EEEEEEC---CEEEEEEECCCCccccccc-hhhH-HHHHHHHHHHHHhhCCEEEEEE-eCCCCCCHHH-
Confidence 0 0111121 2468999999985432110 0000 000 011346788899776654 5544443333
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 193 ~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
..+...+...+.++++|+||+|+.+..
T Consensus 282 ~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 282 QRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred HHHHHHHHHcCCCEEEEEECccCCCch
Confidence 234444555689999999999998653
No 137
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.23 E-value=1.8e-11 Score=114.66 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
-..|+|+|++|+|||||++++++..|
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 45899999999999999999999876
No 138
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.87 E-value=9.1e-13 Score=126.91 Aligned_cols=118 Identities=22% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-.+|+|+|.+|+|||||++++++..+ +.....++...
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 66 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDN----------------------------------------- 66 (204)
Confidence 456899999999999999999998765 21111000000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS-- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~-- 190 (624)
.. ..+.+ ......+.||||||.. .+..+...|++++|++|+++...+.. +...
T Consensus 67 ~~----------~~~~~-~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 122 (204)
T 3th5_A 67 YS----------ANVMV-DGKPVNLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICFSLVSPASFENVRA 122 (204)
Confidence 00 00001 1122467899999943 23456677889999877765433321 1111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 123 ~~~~~l~~~~~-~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 123 KWYPEVRHHCP-NTPIILVGTKLDLRDD 149 (204)
Confidence 22223333222 7899999999999764
No 139
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.22 E-value=5.5e-12 Score=122.10 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|++|+|||||++++++..| +.....++.....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 47 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS--------------------------------------- 47 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEE---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEE---------------------------------------
Confidence 346899999999999999999998765 3221111111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~ 190 (624)
..+.+ ......+.||||||.... ..+...|++++|++|+++...+.. +.. .
T Consensus 48 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 101 (212)
T 2j0v_A 48 ------------ANVAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISKASYENVLK 101 (212)
T ss_dssp ------------EEEEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 00111 112246899999996432 234556899999887766443321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 102 KWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 24444444444 7899999999999764
No 140
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.21 E-value=7.6e-11 Score=118.44 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccc-cccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
+-..|+|+|..|+|||||+|+|+|..+.+.+. ..+|..+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 78 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVS------------------------------------ 78 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEE------------------------------------
Confidence 45689999999999999999999987522221 11122221111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccH
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATS 190 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~ 190 (624)
+.. +...++||||||+.+.... .+.....+.+++. .+|++++++......+...
T Consensus 79 -----------------~~~-~~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~ 134 (262)
T 3def_A 79 -----------------RTM-GGFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDEL 134 (262)
T ss_dssp -----------------EEE-TTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHH
T ss_pred -----------------EEE-CCeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHH
Confidence 111 2247999999998764322 2333444555553 5677666432222233322
Q ss_pred --HHHHHHHHhCCC--CCceEEEeccCcccCc
Q 006958 191 --DAIKLAREVDPT--GERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 --~~~~l~~~~d~~--~~rti~VltK~D~~~~ 218 (624)
.+++.++..... ..++++|+||+|+.+.
T Consensus 135 ~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 135 DKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 344444443222 2489999999999744
No 141
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.20 E-value=8e-12 Score=118.18 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||+++|++..+ +.... .|......
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~-~t~~~~~~-------------------------------------- 45 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYT-------------------------------------- 45 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEEE--------------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-CccceeEE--------------------------------------
Confidence 346899999999999999999999875 32211 11111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
..+.+ ......+.||||||.... ..+...|++.+|++|+++. ++......
T Consensus 46 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~ 98 (184)
T 1m7b_A 46 ------------ASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFD-ISRPETLDSVL 98 (184)
T ss_dssp ------------EEEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEE-CCCHHHHHHHH
Confidence 00001 112246899999995432 2334568899998877654 43322111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 -~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+...++...+ +.|+++|+||+|+.+.
T Consensus 99 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 99 KKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126 (184)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHCC-CCCEEEEEEcchhhcc
Confidence 23333444443 6899999999999753
No 142
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.20 E-value=3e-12 Score=123.49 Aligned_cols=118 Identities=21% Similarity=0.173 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+-.+|+|+|.+|||||||++++++..+ +.....++......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 69 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSA-------------------------------------- 69 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEE--------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEE--------------------------------------
Confidence 446899999999999999999998765 22211111111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
.+.+ ......+.||||||.... ..+...|++.+|++|+++. ++......
T Consensus 70 -------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 121 (204)
T 4gzl_A 70 -------------NVMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFS-LVSPASFENVR 121 (204)
T ss_dssp -------------EEEC-C-CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 0001 111235779999996432 3445678999998877654 44322221
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 191 -DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 191 -~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.++..++... .+.|+++|+||+|+.+..
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 2333444443 378999999999998653
No 143
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=127.70 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=67.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
+|+|+|.+|+|||||+++|++..| +.. ..|.....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~~------------------------------------------ 201 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNV------------------------------------------ 201 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEEE------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceEE------------------------------------------
Confidence 799999999999999999999875 111 11111100
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH-H
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK-L 195 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~-l 195 (624)
.. +.. ....++||||||- +.+..+...|++.+|++|+++...+. ........ +
T Consensus 202 ---------~~--~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~vilV~D~~~~-~s~~~~~~~~ 255 (329)
T 3o47_A 202 ---------ET--VEY-KNISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDR-ERVNEAREEL 255 (329)
T ss_dssp ---------EE--EEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCS-SSHHHHHHHH
T ss_pred ---------EE--Eec-CcEEEEEEECCCC-------------HhHHHHHHHHhccCCEEEEEEECCch-HHHHHHHHHH
Confidence 00 111 2356899999992 23345577899999987776544332 22222211 2
Q ss_pred HHHh---CCCCCceEEEeccCcccCcc
Q 006958 196 AREV---DPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 196 ~~~~---d~~~~rti~VltK~D~~~~~ 219 (624)
...+ ...+.|+|+|+||+|+.+..
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHhhhccCCCeEEEEEECccCCccc
Confidence 2222 22478999999999998653
No 144
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=4e-12 Score=135.17 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEE
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~ 74 (624)
+|++||.+|+|||||+|+|+|..........||+-|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 68999999999999999999987322222345665543
No 145
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.4e-11 Score=129.22 Aligned_cols=122 Identities=19% Similarity=0.196 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..++|++||.||||||||+|+|+|.+....+...||+-|..-.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~------------------------------------ 114 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI------------------------------------ 114 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE------------------------------------
Confidence 45799999999999999999999987655555667777733221
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.. ....++|+||||++..+..+ +...+.+.+.++++|+|++ |++++......+.+
T Consensus 115 -----------------~~-~~~~i~l~D~pGl~~~a~~~------~~~g~~~l~~i~~ad~il~-vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 115 -----------------RY-KGAKIQMLDLPGIIDGAKDG------RGRGKQVIAVARTCNLLFI-ILDVNKPLHHKQII 169 (376)
T ss_dssp -----------------EE-TTEEEEEEECGGGCCC-----------CHHHHHHHHHHHCSEEEE-EEETTSHHHHHHHH
T ss_pred -----------------Ee-CCcEEEEEeCCCccCCchhh------hHHHHHHHHHHHhcCcccc-ccccCccHHHHHHH
Confidence 11 22568999999998765442 1123345567788997655 55666443332222
Q ss_pred H-HHHHhC--CCCCceEEEeccCccc
Q 006958 194 K-LAREVD--PTGERTFGVLTKLDLM 216 (624)
Q Consensus 194 ~-l~~~~d--~~~~rti~VltK~D~~ 216 (624)
. .+..++ -...|.++|+||.|.-
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1 122222 2356889999999963
No 146
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.18 E-value=3.2e-11 Score=114.24 Aligned_cols=147 Identities=12% Similarity=0.142 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.--+|+|+|++|||||||++++++..| +.... .|.. ..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~-~t~~----~~------------------------------------ 56 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEES-PEGG----RF------------------------------------ 56 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCC-TTCE----EE------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CCcc----eE------------------------------------
Confidence 445899999999999999999999876 22111 1100 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
...+.+. .....+.||||||.... . |++.+|++++++. .+...+-....
T Consensus 57 -----------~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~-----~~~~~~~~i~v~d-~~~~~s~~~~~ 105 (184)
T 3ihw_A 57 -----------KKEIVVD-GQSYLLLIRDEGGPPEL-------------Q-----FAAWVDAVVFVFS-LEDEISFQTVY 105 (184)
T ss_dssp -----------EEEEEET-TEEEEEEEEECSSSCCH-------------H-----HHHHCSEEEEEEE-TTCHHHHHHHH
T ss_pred -----------EEEEEEC-CEEEEEEEEECCCChhh-------------h-----eecCCCEEEEEEE-CcCHHHHHHHH
Confidence 0011111 11245788999995321 1 7788998777654 44322222222
Q ss_pred HHHHHhCC----CCCceEEEeccCcccCccc------cHHHHHhCcccccC-CCeeEEEeCChhhhccCCcHHHH
Q 006958 194 KLAREVDP----TGERTFGVLTKLDLMDKGT------NALEVLEGRSYRLQ-HPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 194 ~l~~~~d~----~~~rti~VltK~D~~~~~~------~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
.+...+.. .+.++++|+||+|+..... +..++.. ..+ ..|+.+++.++.++++.+..+..
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 106 NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST----DLKRCTYYETCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----HTTTCEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH----HcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 23333322 4679999999999953221 1122221 222 46777777777766655554443
No 147
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.18 E-value=1.4e-11 Score=119.00 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
...+|+|+|++|+|||||+++|++..| +... ..|......
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~-~~t~~~~~~-------------------------------------- 66 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENY-VPTVFENYT-------------------------------------- 66 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSC-CCCSEEEEE--------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCc-CCccceeEE--------------------------------------
Confidence 345899999999999999999999875 3221 111111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~--~ 190 (624)
..+.+ ......+.||||||.... ..+...|++++|++|+++...+.. +.. .
T Consensus 67 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~ 120 (205)
T 1gwn_A 67 ------------ASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLK 120 (205)
T ss_dssp ------------EEEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 00001 112246899999995432 233456889999887766443321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 121 ~~~~~i~~~~~-~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 121 KWKGEIQEFCP-NTKMLLVGCKSDLRTD 147 (205)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHCC-CCCEEEEEechhhccc
Confidence 23334444433 6899999999999753
No 148
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.15 E-value=6.8e-11 Score=131.16 Aligned_cols=109 Identities=9% Similarity=0.102 Sum_probs=62.9
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...+++|||||.... ..+...|++++|++|+++ +++..-....++..++...+ +.|+|+|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~ii~V~-D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSSVYMLLL-DSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSEEEEEEE-CGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCcEEEEEE-eCCCchhHHHHHHHHHHhCC-CCCEEEEEECCC
Confidence 357899999993321 223446788899776655 55444344455555666554 589999999999
Q ss_pred ccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHH
Q 006958 215 LMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (624)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (624)
+.+......+.+.......+..++.+++.++.++++++..+...
T Consensus 162 l~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp TCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHH
Confidence 97654321222221122334457878777777776665554443
No 149
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.14 E-value=9e-11 Score=113.99 Aligned_cols=115 Identities=23% Similarity=0.393 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..|.|+|+|++|+|||||+++|++..+.+ ...+..|+... .
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~---~~~~~~~~~~~-----------------------------------~- 51 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-----------------------------------D- 51 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC---BCCCSSCEEET-----------------------------------T-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---eeeecCceEEE-----------------------------------E-
Confidence 67899999999999999999999987522 11222331110 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcC----CCEEEEEEecC-CC-cc
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK----PSCIILAISPA-NQ-DI 187 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~----~~~iiL~V~~a-~~-d~ 187 (624)
. ....+.+|||||.... +.+...|+.. +|++|+++... +. .+
T Consensus 52 ~-------------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~ 99 (218)
T 1nrj_B 52 Y-------------------DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 99 (218)
T ss_dssp G-------------------GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTTCC
T ss_pred e-------------------eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChHHH
Confidence 0 2257999999996432 2334455544 88877765544 21 12
Q ss_pred cc-HHHHH-HHHHh---CCCCCceEEEeccCcccCcc
Q 006958 188 AT-SDAIK-LAREV---DPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 188 ~~-~~~~~-l~~~~---d~~~~rti~VltK~D~~~~~ 219 (624)
.. ..++. +.... .+.+.|+++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 100 TTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 11 12221 22111 44679999999999998654
No 150
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.13 E-value=2.9e-11 Score=115.49 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHHHHHHHHh-CCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIKLAREV-DPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~-~~~~~l~~~~-d~~~~rti~VltK 212 (624)
..+.++||+|.... .+.+...|++.+|++|++++-.+. .+.. ..+...+... ...+.++++|.||
T Consensus 56 ~~l~~~Dt~~~~~~------------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK 123 (192)
T 2cjw_A 56 ATIILLDMWENKGE------------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123 (192)
T ss_dssp EEEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEEEeccCcch------------hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEec
Confidence 35789999994321 022345577778987776543332 1111 2333334443 3457899999999
Q ss_pred CcccC
Q 006958 213 LDLMD 217 (624)
Q Consensus 213 ~D~~~ 217 (624)
+|+..
T Consensus 124 ~Dl~~ 128 (192)
T 2cjw_A 124 SDLVR 128 (192)
T ss_dssp TTCGG
T ss_pred hhhhc
Confidence 99875
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.12 E-value=3.7e-12 Score=139.67 Aligned_cols=117 Identities=16% Similarity=0.261 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..|.|+|+|++++|||||+++|++..+.....+..|.-.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 579999999999999999999998765222111111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
... .+..++...++||||||.... ..+...++..+|++||+ ++++.....+ +.
T Consensus 42 --------~~~----~v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~vILV-VDa~dg~~~q-t~ 94 (537)
T 3izy_P 42 --------GAF----LVSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTDIVILV-VAADDGVMKQ-TV 94 (537)
T ss_dssp --------TSC----CBCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSSCEEE-CBSSSCCCHH-HH
T ss_pred --------eEE----EEEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCCEEEEE-EECCCCccHH-HH
Confidence 000 012223457999999995332 23345678889987764 4555544333 33
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
..+..+...+.|+|+|+||+|+.+.
T Consensus 95 e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 95 ESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHcCCcEEEEEeccccccc
Confidence 3445555668899999999999754
No 152
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.12 E-value=4.2e-11 Score=113.32 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc----ccHHHHHHHHHhCCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI----ATSDAIKLAREVDPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~----~~~~~~~l~~~~d~~~~rti~Vlt 211 (624)
..+.+|||||. +.+..+...|+..++++++++. .+... ....|+..++...+ +.|+++|.|
T Consensus 56 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~~i~v~d-~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~n 120 (184)
T 2zej_A 56 LVLNVWDFAGR-------------EEFYSTHPHFMTQRALYLAVYD-LSKGQAEVDAMKPWLFNIKARAS-SSPVILVGT 120 (184)
T ss_dssp CEEEEEEECSH-------------HHHHTTSHHHHHHSEEEEEEEE-GGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEE
T ss_pred eEEEEEecCCC-------------HHHHHhhHHHccCCcEEEEEEe-CCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEE
Confidence 56899999993 3345556678888887766554 33221 11223332333333 688999999
Q ss_pred cCcccCc
Q 006958 212 KLDLMDK 218 (624)
Q Consensus 212 K~D~~~~ 218 (624)
|+|+.+.
T Consensus 121 K~Dl~~~ 127 (184)
T 2zej_A 121 HLDVSDE 127 (184)
T ss_dssp CGGGCCH
T ss_pred CCCcccc
Confidence 9999754
No 153
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.10 E-value=1.1e-10 Score=128.24 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=71.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
-..|+|||.+|+|||||+|+|++..+ +. ...|.-+..-.
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~-------------------------------------- 360 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVET-------------------------------------- 360 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEE--------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEE--------------------------------------
Confidence 35899999999999999999999874 21 11222221110
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~ 194 (624)
+.. +...+.||||||.... ..+...|++++|++|+++. ++..........
T Consensus 361 ---------------~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D-~~~~~s~~~~~~ 410 (497)
T 3lvq_E 361 ---------------VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVD-CADRDRIDEARQ 410 (497)
T ss_dssp ---------------EES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEE-TTCGGGHHHHHH
T ss_pred ---------------EEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEE-CcchhHHHHHHH
Confidence 111 2357999999994332 3446789999998777554 443322222222
Q ss_pred HHHHh----CCCCCceEEEeccCcccCc
Q 006958 195 LAREV----DPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 195 l~~~~----d~~~~rti~VltK~D~~~~ 218 (624)
+...+ ...+.|+|+|+||+|+.+.
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 22222 2347899999999999764
No 154
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.09 E-value=1.8e-10 Score=125.74 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=46.0
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~--~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..++||||||. +.+......++..+|++||++ +++.+... .+.+.+++. .+.|.|+|+||+
T Consensus 73 ~~i~iiDtPGh-------------~~~~~~~~~~~~~aD~~ilVv-da~~g~~~qt~e~l~~~~~---~~ip~IvviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGH-------------ADLIRAVVSAADIIDLALIVV-DAKEGPKTQTGEHMLILDH---FNIPIIVVITKS 135 (482)
T ss_dssp EEEEECCCSSH-------------HHHHHHHHHHTTSCCEEEEEE-ETTTCSCHHHHHHHHHHHH---TTCCBCEEEECT
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEE-ecCCCccHHHHHHHHHHHH---cCCCEEEEEECC
Confidence 57999999992 334556678889999877755 55544332 233434443 478889999999
Q ss_pred cccCc
Q 006958 214 DLMDK 218 (624)
Q Consensus 214 D~~~~ 218 (624)
|+.+.
T Consensus 136 Dl~~~ 140 (482)
T 1wb1_A 136 DNAGT 140 (482)
T ss_dssp TSSCH
T ss_pred Ccccc
Confidence 99864
No 155
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=5.5e-11 Score=125.08 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCccccCC-CCCccHHHHHHHHHHHhhcC-------------CCEEEEEEecCCCccccHHHHHHHHHhCC
Q 006958 136 VNLTLIDLPGLTKVAVE-GQPESIVEDIENMVRSYVEK-------------PSCIILAISPANQDIATSDAIKLAREVDP 201 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~-~~~~~~~~~i~~~~~~yi~~-------------~~~iiL~V~~a~~d~~~~~~~~l~~~~d~ 201 (624)
..+++|||||+...... ..-..+...+......|+.. .++++++|.++...+...+. .+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc-
Confidence 36899999998543221 01112333334444455543 24566666665555555443 3666665
Q ss_pred CCCceEEEeccCcccCcc
Q 006958 202 TGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 202 ~~~rti~VltK~D~~~~~ 219 (624)
.+.++|+|+||+|+....
T Consensus 173 ~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp S-SCEEEEEECCSSSCHH
T ss_pred cCCCEEEEEECCCCCCHH
Confidence 578999999999998653
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.07 E-value=6.6e-10 Score=119.94 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+++|.+++|||||+++|++..- .+..+..-.+. +. ....+..-.+++-+.+....+ +
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~-----~i~~~~~~~~~--~~---------~~~~g~~~~~~a~~~d~~~~e--r 77 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTG-----MVDKRTLEKYE--RE---------AKEKNRETWYLSWALDTNQEE--R 77 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcC-----CCchHHHHHHH--HH---------HHhccccchhhhhhhccchhH--h
Confidence 456999999999999999999987542 11111000000 00 000000000011111111111 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc------
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI------ 187 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~------ 187 (624)
..+++-+.....+..+ ...++||||||. +.+......++..+|++||+| +++...
T Consensus 78 ----~~GiTid~~~~~~~~~-~~~~~iiDTPGh-------------~~f~~~~~~~~~~aD~~ilVV-Da~~g~~e~~~~ 138 (439)
T 3j2k_7 78 ----DKGKTVEVGRAYFETE-KKHFTILDAPGH-------------KSFVPNMIGGASQADLAVLVI-SARKGEFETGFE 138 (439)
T ss_pred ----hcCceEEEeEEEEecC-CeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEE-ECCCCccccccC
Confidence 1233333333333333 358999999993 334555667888999877755 454432
Q ss_pred ---ccHHHHHHHHHhCCCCCc-eEEEeccCcccC
Q 006958 188 ---ATSDAIKLAREVDPTGER-TFGVLTKLDLMD 217 (624)
Q Consensus 188 ---~~~~~~~l~~~~d~~~~r-ti~VltK~D~~~ 217 (624)
.+.+.+.++. ..+.+ +|+|+||+|+.+
T Consensus 139 ~~~qt~e~l~~~~---~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 139 KGGQTREHAMLAK---TAGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCchHHHHHHHHH---HcCCCeEEEEeecCCCcc
Confidence 2233333333 34666 899999999964
No 157
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.06 E-value=6.8e-11 Score=122.50 Aligned_cols=117 Identities=23% Similarity=0.213 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+++|.+|+|||||++++++..+ +.....++.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEE-------------------------------------
Confidence 457999999999999999999998765 222222221110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--- 190 (624)
+.+ ......+.||||||.... ..+...|++.+|++|+++. ++......
T Consensus 196 --------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 246 (332)
T 2wkq_A 196 --------------VMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFS-LVSPASFHHVR 246 (332)
T ss_dssp --------------EEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEe-CCCHHHHHHHH
Confidence 001 111235779999996432 2345678899998777554 44322222
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 -~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 23344444444 7899999999999764
No 158
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.06 E-value=1.4e-10 Score=124.07 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---ccHHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~---~~~~~~~l~~~~d~~~~rti~VltK 212 (624)
..++||||||.. .+......++..+|++||++ +++... .+.+++.+++.+.. .++|+|+||
T Consensus 75 ~~~~iiDtPGh~-------------~~~~~~~~~~~~~D~~ilVv-da~~~~~~~qt~~~~~~~~~~~~--~~iivviNK 138 (403)
T 3sjy_A 75 RRISFIDAPGHE-------------VLMATMLSGAALMDGAILVV-AANEPFPQPQTREHFVALGIIGV--KNLIIVQNK 138 (403)
T ss_dssp EEEEEEECCCCG-------------GGHHHHHHHHTTCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred ceEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEE-ECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEEC
Confidence 468999999932 22455677889999877755 455433 22344445555432 479999999
Q ss_pred CcccCcc
Q 006958 213 LDLMDKG 219 (624)
Q Consensus 213 ~D~~~~~ 219 (624)
+|+.+..
T Consensus 139 ~Dl~~~~ 145 (403)
T 3sjy_A 139 VDVVSKE 145 (403)
T ss_dssp GGGSCHH
T ss_pred ccccchH
Confidence 9998653
No 159
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.05 E-value=1.7e-10 Score=110.50 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=68.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+|+|+.|||||||+++|+|..+ +.......
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~--------------------------------------------- 38 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTI--------------------------------------------- 38 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCC---------------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcc---------------------------------------------
Confidence 57899999999999999999999875 21111100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---H
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~---~ 191 (624)
+.......+.+.+ ....+.+|||||.... +.+...|.+.++++++++ +........ .
T Consensus 39 -----~~~~~~~~i~~~g-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~ 98 (199)
T 2f9l_A 39 -----GVEFATRSIQVDG-KTIKAQIWDTAGQERY-------------RRITSAYYRGAVGALLVY-DIAKHLTYENVER 98 (199)
T ss_dssp -----SCEEEEEEEEETT-EEEEEEEEECSSGGGT-------------TCCCHHHHTTCSEEEEEE-ETTCHHHHHTHHH
T ss_pred -----ceeEEEEEEEECC-EEEEEEEEECCCchhh-------------hhhhHHHHhcCCEEEEEE-ECcCHHHHHHHHH
Confidence 0000001111111 1135788999994432 223456778899776655 443322111 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
++..++.....+.+++.|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 99 WLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccc
Confidence 333333444457899999999999753
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.02 E-value=2.7e-10 Score=124.68 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=74.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
...|+++|.+++|||||+++|++... .+..+....+. ... ...+..-.++..+.+....
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~-----~i~~~~~~~~~--~~~---------~~~g~~~~~~~~~~d~~~~----- 91 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQLRKLQ--RES---------ETMGKSSFKFAWIMDQTNE----- 91 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTT-----SSCHHHHHHHC--C-----------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-----CccHHHHHHHH--HHH---------HhcCCCcchhhhhhccchh-----
Confidence 45899999999999999999987631 11111000000 000 0000000011111111111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc------cc
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD------IA 188 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d------~~ 188 (624)
....|++.+.....+..+ ...++||||||..+ +...+..++..+|++||+|...+.. +.
T Consensus 92 -e~~~GiTi~~~~~~~~~~-~~~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~ 156 (483)
T 3p26_A 92 -ERERGVTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLD 156 (483)
T ss_dssp ----CCSSCCCCEEEEECS-SCEEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCC
T ss_pred -HhhcCcceEeeeEEEecC-CceEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchh
Confidence 112345555444545444 46899999999532 3556678899999887766443321 11
Q ss_pred cH--HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 189 TS--DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 189 ~~--~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+ +.+.+++.+. -.++|+|+||+|+.+.
T Consensus 157 ~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 157 GQTKEHMLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp HHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred hhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence 22 2233444332 1469999999999863
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.7e-10 Score=127.61 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=77.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|++||.+|+|||||+|+|++... .+..+.- ..+.......+..-.++.-+.+...++.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i-----------~~~~~~~~~~g~~~~~~a~~~d~~~~e~-- 227 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL-----------RKLQRESETMGKSSFKFAWIMDQTNEER-- 227 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH-----------HHHHHHSSCSSSSCCSSSHHHHHHHHHH--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH-----------HHHHhhhhhccccccceeeeeccchhhh--
Confidence 356899999999999999999998743 1111100 0000000000111112222332222222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-------
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD------- 186 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d------- 186 (624)
..| ++.+.....+..+ ...++||||||..+ +...+..++..+|++||+| +++.+
T Consensus 228 ~~G----iTid~~~~~~~~~-~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVV-Da~~g~~e~~~~ 288 (611)
T 3izq_1 228 ERG----VTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCV-DCSTNAFESGFD 288 (611)
T ss_dssp HTT----TCCSCSCCEEECS-SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEE-ECSHHHHHTTCC
T ss_pred hCC----eeEeeeeEEEecC-CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEE-ECCCCcccccch
Confidence 223 2222222223333 36799999999532 3455677889999877755 44432
Q ss_pred cccHHHHHHHHHhCCCCC-ceEEEeccCcccCc
Q 006958 187 IATSDAIKLAREVDPTGE-RTFGVLTKLDLMDK 218 (624)
Q Consensus 187 ~~~~~~~~l~~~~d~~~~-rti~VltK~D~~~~ 218 (624)
+..+.. ..+..+...+. ++|+|+||+|+.+.
T Consensus 289 ~~~qt~-e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 289 LDGQTK-EHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp TTSHHH-HHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred hhhHHH-HHHHHHHHcCCCeEEEEEecccccch
Confidence 112221 12222223344 58999999999863
No 162
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.99 E-value=1.8e-09 Score=115.61 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---ccHHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~---~~~~~~~l~~~~d~~~~rti~VltK 212 (624)
..++|||||| .+.+......++..+|++||++ +++... .+.+.+.+++.+. ..++|+|+||
T Consensus 81 ~~i~iiDtPG-------------h~~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPG-------------HETLMATMLSGASLMDGAILVI-AANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSS-------------HHHHHHHHHTTCSCCSEEEEEE-ETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCC-------------HHHHHHHHHHhHhhCCEEEEEE-ECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 4689999999 3334445566777889877755 555433 2233444444432 2478999999
Q ss_pred CcccCcc
Q 006958 213 LDLMDKG 219 (624)
Q Consensus 213 ~D~~~~~ 219 (624)
+|+.+..
T Consensus 145 ~Dl~~~~ 151 (408)
T 1s0u_A 145 IDLVDEK 151 (408)
T ss_dssp TTSSCTT
T ss_pred cCCCCHH
Confidence 9998653
No 163
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.99 E-value=1.8e-09 Score=115.65 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---ccHHHHHHHHHhCCCCCceEEEecc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSDAIKLAREVDPTGERTFGVLTK 212 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~---~~~~~~~l~~~~d~~~~rti~VltK 212 (624)
..++|||||| .+.+.......+..+|++||+| +++... .+.+.+.+++.+. ..++|+|+||
T Consensus 83 ~~i~iiDtPG-------------h~~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPG-------------HEALMTTMLAGASLMDGAILVI-AANEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSS-------------HHHHHHHHHHCGGGCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCC-------------hHHHHHHHHhhhhhCCEEEEEE-ECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 4689999999 2334455566778899877755 555433 2334444555443 2478999999
Q ss_pred CcccCc
Q 006958 213 LDLMDK 218 (624)
Q Consensus 213 ~D~~~~ 218 (624)
+|+.+.
T Consensus 147 ~Dl~~~ 152 (410)
T 1kk1_A 147 IELVDK 152 (410)
T ss_dssp GGGSCH
T ss_pred ccCCCH
Confidence 999864
No 164
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.99 E-value=6.6e-10 Score=116.27 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999984
No 165
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.97 E-value=5.1e-10 Score=124.33 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+++.|+++|+.++|||||+++|++.. +..++.. .. ..+.|... . ++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~--~~------------------~~~~D~~~------~--Er 50 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISERE--KR------------------EQLLDTLD------V--ER 50 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCccccc--cc------------------ccccccch------h--hh
Confidence 56899999999999999999998632 1111110 00 00000000 0 00
Q ss_pred hhCCCCCcccccEEEEEecCC--CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPN--VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
..+..+....+.+....++ ...++||||||..+. ...+.+++..+|++||+| +++.....+.
T Consensus 51 --erGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVV-Da~~gv~~qt 114 (600)
T 2ywe_A 51 --ERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLI-DASQGIEAQT 114 (600)
T ss_dssp -------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEE-ETTTBCCHHH
T ss_pred --cccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEE-ECCCCccHHH
Confidence 1112233344555444322 257889999996542 445677889999877755 5555444433
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.. ........+.|.|+|+||+|+...
T Consensus 115 ~~-~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 115 VA-NFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HH-HHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HH-HHHHHHHCCCCEEEEEeccCcccc
Confidence 22 112222357899999999999754
No 166
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.97 E-value=1.3e-09 Score=119.78 Aligned_cols=138 Identities=16% Similarity=0.209 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.+.|+++|.+|||||||+|+|++..-.....|.+...- ..+.. +.+....+ +
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~-------------------~~~~~------~~d~~~~e--~ 64 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRK-------------------AARHA------TSDWMELE--K 64 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC-----------------------CC------HHHHHHHH--H
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccc-------------------cccce------ecccchhh--h
Confidence 568999999999999999999985431110001000000 00000 11111111 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
..| ..+......+. . +...++||||||..+. ...+..+++.+|++|+++ ++......+. .
T Consensus 65 ~~G--iTi~~~~~~~~--~-~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVv-Da~~g~~~~t-~ 124 (528)
T 3tr5_A 65 QRG--ISVTTSVMQFP--Y-KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVI-DAAKGVEPRT-I 124 (528)
T ss_dssp HHC--CSSSSSEEEEE--E-TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEE-ETTTCSCHHH-H
T ss_pred cCC--eeEEEeEEEEE--e-CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEE-eCCCCCCHHH-H
Confidence 112 22333333333 2 2367999999996542 334778999999877755 4544444333 3
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+.+.+...+.|+++|+||+|+...
T Consensus 125 ~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 125 KLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccc
Confidence 3555566668999999999999654
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.96 E-value=1.9e-09 Score=103.78 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=43.3
Q ss_pred CcEEEeCCCCccccCCCCCccHHHHHHHHHHHhh---cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV---EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 137 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi---~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
.+.++||||+..... +....+.++..+..|+ ...+.+++ +.++.......+ ..+.+.+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVV-LMDIRHPLKDLD-QQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEE-EEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEE-EEECCCCCchhH-HHHHHHHHHcCCCeEEEEecc
Confidence 688999999764211 1112334455555565 35676555 445543332222 123333334578899999999
Q ss_pred cccCcc
Q 006958 214 DLMDKG 219 (624)
Q Consensus 214 D~~~~~ 219 (624)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998654
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.94 E-value=5e-11 Score=129.62 Aligned_cols=114 Identities=21% Similarity=0.334 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.|.|+++|+.++|||||+++|.+..+.....+-.|...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 679999999999999999999997654111111011000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--cHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--TSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~--~~~ 191 (624)
+ .. .+.. +...++||||||..... .+...++..+|++||+| +++.... +.+
T Consensus 42 --~------~~----~v~~-~~~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVV-da~~g~~~qT~e 94 (501)
T 1zo1_I 42 --G------AY----HVET-ENGMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVV-AADDGVMPQTIE 94 (501)
T ss_dssp --S------CC----CCCT-TSSCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEE-ETTTBSCTTTHH
T ss_pred --E------EE----EEEE-CCEEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEe-ecccCccHHHHH
Confidence 0 00 0111 22579999999954322 22346778899888766 4544332 233
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+..++ ..+.|+|+|+||+|+.+.
T Consensus 95 ~l~~~~---~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 95 AIQHAK---AAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp HHHHHH---HTTCCEEEEEECSSSSTT
T ss_pred HHHHHH---hcCceEEEEEEecccccc
Confidence 443443 347889999999999753
No 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.94 E-value=4.9e-10 Score=124.68 Aligned_cols=134 Identities=17% Similarity=0.238 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++..|+++|+.++|||||+++|++.. +..++.- .. ..+.|... . ++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~--~~------------------~~~~D~~~------~--Er 48 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDRE--ME------------------AQVLDSMD------L--ER 48 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCccccc--cc------------------ccccccch------h--hh
Confidence 46789999999999999999998643 1111110 00 00000000 0 00
Q ss_pred hhCCCCCcccccEEEEEecC--CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006958 114 ITGKSKQISNIPIQLSIYSP--NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~ 191 (624)
. .+..+....+.+..... ....++||||||..+ +...+..++..+|++||+| +++.....+.
T Consensus 49 e--rGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d-------------F~~ev~~~l~~aD~aILVV-Da~~gv~~qt 112 (599)
T 3cb4_D 49 E--RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD-------------FSYEVSRSLAACEGALLVV-DAGQGVEAQT 112 (599)
T ss_dssp ----------CEEEEEEECTTSCEEEEEEEECCCCGG-------------GHHHHHHHHHHCSEEEEEE-ETTTCCCTHH
T ss_pred c--ccceeeeeEEEEEEecCCCCeEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEE-ECCCCCCHHH
Confidence 0 11223333444444321 235789999999643 2445677888999877755 5554444433
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...+. .....+.|.|+|+||+|+.+.
T Consensus 113 ~~~~~-~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 113 LANCY-TAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HHHHH-HHHHTTCEEEEEEECTTSTTC
T ss_pred HHHHH-HHHHCCCCEEEeeeccCcccc
Confidence 32221 122347899999999999764
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.93 E-value=1.9e-09 Score=116.37 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+++|+.++|||||+++|++..- .+.++....+.......+ ..+..+ ++..+.+....+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~-----~i~~~~~~~i~~~s~~~g--------t~~~~~-~~~~~~d~~~~E--- 85 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSK-----MIYEDHLEAITRDSKKSG--------TTGDDV-DLALLVDGLQAE--- 85 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTT-----CC--------------------------CCC---CHHHHHHHHC----
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcC-----CCchhhhhhhhhhhhccC--------ccccch-hhhhhhccChhH---
Confidence 456899999999999999999997642 111111000000000000 000000 111112111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~--~~ 191 (624)
...+++-+.-...+.. +...++||||||..+ +......++..+|++||++ +++..... .+
T Consensus 86 ---~~rGiTi~~~~~~~~~-~~~~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVv-Da~~g~~~qt~~ 147 (434)
T 1zun_B 86 ---REQGITIDVAYRYFST-AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILV-DARYGVQTQTRR 147 (434)
T ss_dssp -------CCCCCEEEEEEC-SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEE-ETTTCSCHHHHH
T ss_pred ---HHCCcEEEeeeeEeec-CCceEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEE-ECCCCCcHHHHH
Confidence 1123333322222222 345799999999432 2344556889999877755 55544332 23
Q ss_pred HHHHHHHhCCCCC-ceEEEeccCcccCc
Q 006958 192 AIKLAREVDPTGE-RTFGVLTKLDLMDK 218 (624)
Q Consensus 192 ~~~l~~~~d~~~~-rti~VltK~D~~~~ 218 (624)
.+.+++.+ +. ++|+|+||+|+.+.
T Consensus 148 ~l~~~~~~---~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 148 HSYIASLL---GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp HHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred HHHHHHHc---CCCeEEEEEEcCcCCcc
Confidence 34455543 44 58999999999863
No 171
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.93 E-value=5.8e-09 Score=109.42 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..+.|+++|.+|+||||++++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999743
No 172
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.93 E-value=2.5e-09 Score=101.71 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=69.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+|+|+.|||||||+++|+|..+ |.....+.-
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~------------------------------------------- 63 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIG------------------------------------------- 63 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCS-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccc-------------------------------------------
Confidence 356899999999999999999999875 322111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--c-H
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--T-S 190 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~--~-~ 190 (624)
.....-.+.+.+ ....+.++||||..+.. .++..|++.++.+++++ +...... + .
T Consensus 64 -------~~~~~~~i~~~g-~~~~~~i~Dt~g~~~~~-------------~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~ 121 (191)
T 1oix_A 64 -------VEFATRSIQVDG-KTIKAQIWDTAGLERYR-------------AITSAYYRGAVGALLVY-DIAKHLTYENVE 121 (191)
T ss_dssp -------EEEEEEEEEETT-EEEEEEEEEECSCCSSS-------------CCCHHHHTTCCEEEEEE-ETTCHHHHHTHH
T ss_pred -------eEEEEEEEEECC-EEEEEEEEECCCCcchh-------------hhhHHHhhcCCEEEEEE-ECcCHHHHHHHH
Confidence 000001111111 11346789999965422 23456778888766654 4332211 1 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 191 ~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.++..++.......+++.|+||+|+.+.
T Consensus 122 ~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 122 RWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2333333444457899999999999753
No 173
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.90 E-value=1.1e-09 Score=122.02 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
+.++||||||..+.. .+..+++..+|++||++ +++.+...+.. ..++.+...+.|+|+|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~-------------~~~~r~~~~aD~aILVv-Da~~Gv~~qT~-e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFT-------------TLRKRGGALADLAILIV-DINEGFKPQTQ-EALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCT-------------TSBCSSSBSCSEEEEEE-ETTTCCCHHHH-HHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEE-ECCCCccHhHH-HHHHHHHHcCCeEEEEeccccc
Confidence 359999999965432 22345778899877755 55554433322 2223333457899999999999
Q ss_pred cC
Q 006958 216 MD 217 (624)
Q Consensus 216 ~~ 217 (624)
..
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 75
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.88 E-value=2.3e-09 Score=112.94 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCce-EEEec-
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERT-FGVLT- 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~--~~~~~l~~~~d~~~~rt-i~Vlt- 211 (624)
..++||||||..+. ...+..++..+|++||+|. +.++.. .+.+.+++. .+.+. |+|+|
T Consensus 60 ~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~---~~i~~~ivvvNN 121 (370)
T 2elf_A 60 RNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDL---LGFKHGIIALTR 121 (370)
T ss_dssp SEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH---TTCCEEEEEECC
T ss_pred eEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH---cCCCeEEEEEEe
Confidence 56999999995431 2334556789998888665 444443 334444444 35676 99999
Q ss_pred cCcc
Q 006958 212 KLDL 215 (624)
Q Consensus 212 K~D~ 215 (624)
|+|+
T Consensus 122 K~Dl 125 (370)
T 2elf_A 122 SDST 125 (370)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9999
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.88 E-value=4.6e-09 Score=115.61 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||..+. ...+..|+..+|++|+++. +......+. ..+.+.+...+.|+++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvD-a~~g~~~~t-~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVID-AAKGVEDRT-RKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEE-TTTCSCHHH-HHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEe-CCccchHHH-HHHHHHHHHcCCCEEEEEcCcC
Confidence 367999999996432 2346678999998877654 444443332 3355666667899999999999
Q ss_pred ccCcc
Q 006958 215 LMDKG 219 (624)
Q Consensus 215 ~~~~~ 219 (624)
+....
T Consensus 146 l~~~~ 150 (529)
T 2h5e_A 146 RDIRD 150 (529)
T ss_dssp SCCSC
T ss_pred Ccccc
Confidence 97653
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.85 E-value=2.3e-09 Score=114.13 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=82.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (624)
.+.|++||.+||||||||++|+|....-.+...+|..|..-.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~-------------------------------------- 198 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV-------------------------------------- 198 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE--------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE--------------------------------------
Confidence 467999999999999999999997531112222333331110
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHH
Q 006958 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDA 192 (624)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~-d~~~-~~~ 192 (624)
+...+...++++|+||+........ .+.. ...+.++.++.++.++ +... .+.. +.+
T Consensus 199 ---------------V~~~~~~~~~l~DtpGli~~a~~~~--~L~~----~fl~~~era~~lL~vv-Dls~~~~~~ls~g 256 (416)
T 1udx_A 199 ---------------VEVSEEERFTLADIPGIIEGASEGK--GLGL----EFLRHIARTRVLLYVL-DAADEPLKTLETL 256 (416)
T ss_dssp ---------------EECSSSCEEEEEECCCCCCCGGGSC--CSCH----HHHHHHTSSSEEEEEE-ETTSCHHHHHHHH
T ss_pred ---------------EEecCcceEEEEeccccccchhhhh--hhhH----HHHHHHHHHHhhhEEe-CCccCCHHHHHHH
Confidence 1111225689999999976432211 0111 1233467788766655 4431 1111 112
Q ss_pred HHHHHHhCC--CCCceEEEeccCcccCccccHHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHH
Q 006958 193 IKLAREVDP--TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 193 ~~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (624)
.+....+.+ ...|.|+|+||+|+... .....+.. .....+..++.+++.+..++++++..+..
T Consensus 257 ~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~-~l~~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 257 RKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALAD-ALAREGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp HHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHH-HHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHH-HHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence 222222221 25789999999999765 22222211 11112234455555555555444444333
No 177
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.84 E-value=6.3e-09 Score=111.16 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+++|+.++|||||+++|++... .. +... .+..+. ..+... .++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~-~~--g~~~--------------------------~~~~~~-~~d~~~--~e~ 57 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAA-AE--NPNV--------------------------EVKDYG-DIDKAP--EER 57 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHH-HS--CTTS--------------------------CCCCHH-HHSCSH--HHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhh-hc--Cccc--------------------------cccchh-hccCCH--HHH
Confidence 456899999999999999999997410 00 0000 000000 000000 011
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SD 191 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~--~~ 191 (624)
..| ++-+...+.+.. ....++||||||..+ +......++..+|++|+++. ++..... .+
T Consensus 58 ~~G----iTi~~~~~~~~~-~~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvd-a~~g~~~qt~~ 118 (405)
T 2c78_A 58 ARG----ITINTAHVEYET-AKRHYSHVDCPGHAD-------------YIKNMITGAAQMDGAILVVS-AADGPMPQTRE 118 (405)
T ss_dssp HHT----CCCSCEEEEEEC-SSCEEEEEECCCSGG-------------GHHHHHHHHTTCSSEEEEEE-TTTCCCHHHHH
T ss_pred HcC----CCEEeeeeEecc-CCeEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEEEE-CCCCCcHHHHH
Confidence 222 222233333333 346799999999543 24455678889998877664 4433322 23
Q ss_pred HHHHHHHhCCCCCc-eEEEeccCcccC
Q 006958 192 AIKLAREVDPTGER-TFGVLTKLDLMD 217 (624)
Q Consensus 192 ~~~l~~~~d~~~~r-ti~VltK~D~~~ 217 (624)
++.+++. .+.| +++|+||+|+.+
T Consensus 119 ~l~~~~~---~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 119 HILLARQ---VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHHHHHH---TTCCCEEEEEECGGGCC
T ss_pred HHHHHHH---cCCCEEEEEEECccccC
Confidence 3334443 4677 789999999985
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.84 E-value=3.9e-09 Score=114.50 Aligned_cols=143 Identities=22% Similarity=0.283 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC-cccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
....|+++|++++|||||+++|++.. .++... +. . |..-....+..-.++.-+.+....+..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~~-~---------------~~~~~~~~g~~~~~~a~~~d~~~~er~ 68 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-IE-K---------------FEKEAAELGKGSFKYAWVLDKLKAERE 68 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-HH-H---------------HHHHGGGGSSSCCCHHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-HH-H---------------hhhhHHhcCCcchhhhhhhccchhHHh
Confidence 34689999999999999999999741 111000 00 0 000000000000123333333222222
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc-----
Q 006958 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI----- 187 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~----- 187 (624)
.|.+..+. ...+..+ ...++||||||.. .+...+..++..+|++||+| +++...
T Consensus 69 --~GiTi~~~----~~~~~~~-~~~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilVv-da~~g~~~~sf 127 (458)
T 1f60_A 69 --RGITIDIA----LWKFETP-KYQVTVIDAPGHR-------------DFIKNMITGTSQADCAILII-AGGVGEFEAGI 127 (458)
T ss_dssp --TTCCCSCS----CEEEECS-SEEEEEEECCCCT-------------THHHHHHHSSSCCSEEEEEE-ECSHHHHHHHT
T ss_pred --cCcEEEEE----EEEEecC-CceEEEEECCCcH-------------HHHHHHHhhhhhCCEEEEEE-eCCcCcccccc
Confidence 23222222 1223333 3579999999932 23445677889999877755 554332
Q ss_pred ----ccHHHHHHHHHhCCCCCc-eEEEeccCcccC
Q 006958 188 ----ATSDAIKLAREVDPTGER-TFGVLTKLDLMD 217 (624)
Q Consensus 188 ----~~~~~~~l~~~~d~~~~r-ti~VltK~D~~~ 217 (624)
.+.+.+.+++. .+.+ +|+|+||+|+.+
T Consensus 128 ~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 128 SKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 22233334443 3555 899999999984
No 179
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.80 E-value=1.6e-08 Score=107.65 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCc-eEEEec
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGER-TFGVLT 211 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~--~~~~l~~~~d~~~~r-ti~Vlt 211 (624)
...++|||||| .+.+......++..+|++||++ +++.....+ +.+.+++. .+.| .|+|+|
T Consensus 65 ~~~~~iiDtpG-------------~~~f~~~~~~~~~~aD~~ilVv-da~~g~~~qt~e~l~~~~~---~~vp~iivviN 127 (397)
T 1d2e_A 65 ARHYAHTDCPG-------------HADYVKNMITGTAPLDGCILVV-AANDGPMPQTREHLLLARQ---IGVEHVVVYVN 127 (397)
T ss_dssp SCEEEEEECSS-------------HHHHHHHHHHTSSCCSEEEEEE-ETTTCSCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CeEEEEEECCC-------------hHHHHHHHHhhHhhCCEEEEEE-ECCCCCCHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 46799999999 3334556677889999887765 454433322 33334443 4677 589999
Q ss_pred cCcccC
Q 006958 212 KLDLMD 217 (624)
Q Consensus 212 K~D~~~ 217 (624)
|+|+.+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999985
No 180
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.78 E-value=5.1e-09 Score=112.91 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=43.8
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-------cccH--HHHHHHHHhCCCCC-
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-------IATS--DAIKLAREVDPTGE- 204 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-------~~~~--~~~~l~~~~d~~~~- 204 (624)
...++||||||..+ +......++..+|++||++. ++.+ +..+ +.+.+++.+ +.
T Consensus 83 ~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvD-a~~gsfe~~~~~~~qt~~~~~~~~~~---~~~ 145 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVS-AKKGEYEAGMSVEGQTREHIILAKTM---GLD 145 (435)
T ss_dssp SCEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEE-CSTTHHHHHHSTTCHHHHHHHHHHHT---TCT
T ss_pred CeEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEE-CCCCccccccccchHHHHHHHHHHHc---CCC
Confidence 36799999999433 24456778999998887664 4434 2222 222233332 44
Q ss_pred ceEEEeccCcccCc
Q 006958 205 RTFGVLTKLDLMDK 218 (624)
Q Consensus 205 rti~VltK~D~~~~ 218 (624)
++|+|+||+|+.+.
T Consensus 146 ~iivviNK~Dl~~~ 159 (435)
T 1jny_A 146 QLIVAVNKMDLTEP 159 (435)
T ss_dssp TCEEEEECGGGSSS
T ss_pred eEEEEEEcccCCCc
Confidence 58899999999873
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=2.9e-08 Score=105.77 Aligned_cols=81 Identities=16% Similarity=0.380 Sum_probs=41.3
Q ss_pred CCcEEEeCCCCccccCCC-CCccHHHHHHHHHHHh-----------hcCCC--EEEEEEecCCCccccHHHHHHHHHhCC
Q 006958 136 VNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSY-----------VEKPS--CIILAISPANQDIATSDAIKLAREVDP 201 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~-~~~~~~~~i~~~~~~y-----------i~~~~--~iiL~V~~a~~d~~~~~~~~l~~~~d~ 201 (624)
+.++++||||+....... .-..+.+.+......| +.+++ ++++++.|....+...+. .+++.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHhc
Confidence 468999999987542210 0111222233333333 34444 445545454344555443 46677765
Q ss_pred CCCceEEEeccCcccCc
Q 006958 202 TGERTFGVLTKLDLMDK 218 (624)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (624)
+.++|+|+||+|+..+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.76 E-value=6.5e-09 Score=118.29 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||..+. ...+..+++.+|++|+++ ++......+.. .+.+.+...+.|.++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVv-Da~~g~~~~~~-~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVL-DAQSGVEPQTE-TVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEE-ETTTBSCHHHH-HHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEE-CCCCCCcHHHH-HHHHHHHHcCCCEEEEEECCC
Confidence 367999999997542 233567888899877755 44444433322 233334445789999999999
Q ss_pred ccCc
Q 006958 215 LMDK 218 (624)
Q Consensus 215 ~~~~ 218 (624)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 183
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.75 E-value=6.5e-09 Score=103.81 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.4
Q ss_pred CCCCeEEEECCC---------CCCHHHHHHHhhCC
Q 006958 33 EALPSVAVVGGQ---------SSGKSSVLESVVGR 58 (624)
Q Consensus 33 ~~lP~IvvvG~~---------ssGKSSllnal~g~ 58 (624)
.....|+|||++ |||||||++++++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 356699999999 99999999999994
No 184
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.74 E-value=1.8e-08 Score=103.24 Aligned_cols=116 Identities=17% Similarity=0.261 Sum_probs=69.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (624)
.|+++|+.|+||||+++.+.+. +.|... .|- +
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~-~~~~~~--~~~---------------------------------------------~ 32 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN-MQPLDT--LYL---------------------------------------------E 32 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC-CCSGGG--TTC---------------------------------------------C
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CCCCcc--cee---------------------------------------------c
Confidence 4899999999999999998876 444321 111 1
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HHHHH
Q 006958 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIK 194 (624)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~--~~~~~ 194 (624)
.+.++.... + . ....+.||||||--+.... .+ +...|+++++++|+++...+. +.. ..+..
T Consensus 33 ~Tig~~~~~----v-~-~~v~LqIWDTAGQErf~~~----~l------~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~ 95 (331)
T 3r7w_B 33 STSNPSLEH----F-S-TLIDLAVMELPGQLNYFEP----SY------DSERLFKSVGALVYVIDSQDE-YINAITNLAM 95 (331)
T ss_dssp CCCSCCCEE----E-C-SSSCEEEEECCSCSSSCCC----SH------HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHH
T ss_pred CeeeeeeEE----E-c-cEEEEEEEECCCchhccch----hh------hhhhhccCCCEEEEEEECCch-HHHHHHHHHH
Confidence 112222211 1 1 2368999999994332100 00 356899999988876544433 221 12222
Q ss_pred HH---HHhCCCCCceEEEeccCcccCc
Q 006958 195 LA---REVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 195 l~---~~~d~~~~rti~VltK~D~~~~ 218 (624)
+. +...| +.++++|.||+|+.+.
T Consensus 96 ~l~~~~~~~~-~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 96 IIEYAYKVNP-SINIEVLIHKVDGLSE 121 (331)
T ss_dssp HHHHHHHHCT-TCEEEEECCCCCSSCS
T ss_pred HHHHHhhcCC-CCcEEEEEECcccCch
Confidence 22 33344 6899999999999764
No 185
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=2.4e-08 Score=106.00 Aligned_cols=135 Identities=16% Similarity=0.271 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..|.++|||..|||||||+|.|+|..+..... ....|.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~--~~~~~~---------------------------------------- 78 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPA--THTQPG---------------------------------------- 78 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSS----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcC--CCCCcc----------------------------------------
Confidence 35669999999999999999999985421110 000010
Q ss_pred hhCCCCCcccccEEEEEecCCC-CCcEEEeCCCCccccCCC-CCcc----HHHHHHHHHHHhhc---------C--CCEE
Q 006958 114 ITGKSKQISNIPIQLSIYSPNV-VNLTLIDLPGLTKVAVEG-QPES----IVEDIENMVRSYVE---------K--PSCI 176 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~-~~ltlvDtPGi~~~~~~~-~~~~----~~~~i~~~~~~yi~---------~--~~~i 176 (624)
.....+.+....+.. +.++++|+||+....... .-.. +..++......+.. + .|++
T Consensus 79 -------~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~ 151 (427)
T 2qag_B 79 -------VQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVC 151 (427)
T ss_dssp -------CEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEE
T ss_pred -------ceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEE
Confidence 000011111222221 479999999987532210 0011 22334444444421 1 2456
Q ss_pred EEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 177 ILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 177 iL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
++++.|++.++...+ ..+++.+. .+.++|+|+||+|.+.+.
T Consensus 152 v~fI~d~~~~l~~~D-ieilk~L~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 152 LYFIAPTGHSLKSLD-LVTMKKLD-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp EEEECCCC---CHHH-HHHHHHTC-SCSEEEEEESCGGGSCHH
T ss_pred EEEEeCCCCCCCHHH-HHHHHHHh-hCCCEEEEEcchhccchH
Confidence 777888887777666 45888887 689999999999998754
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.73 E-value=1.7e-08 Score=117.62 Aligned_cols=67 Identities=24% Similarity=0.300 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--cHHHHHHHHHhCCCCCc-eEEEe
Q 006958 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--TSDAIKLAREVDPTGER-TFGVL 210 (624)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~--~~~~~~l~~~~d~~~~r-ti~Vl 210 (624)
+...++|||||| .+.+......++..+|++||+| +++.... +.+.+.+++. .+.| +|+|+
T Consensus 357 ~~~kI~IIDTPG-------------HedF~~~mi~gas~AD~aILVV-DAtdGv~~QTrEhL~ll~~---lgIP~IIVVI 419 (1289)
T 3avx_A 357 PTRHYAHVDCPG-------------HADYVKNMITGAAQMDGAILVV-AATDGPMPQTREHILLGRQ---VGVPYIIVFL 419 (1289)
T ss_dssp SSCEEEEEECCC-------------HHHHHHHHHHTSCCCSEEEEEE-ETTTCSCTTHHHHHHHHHH---HTCSCEEEEE
T ss_pred CCEEEEEEECCC-------------hHHHHHHHHHHHhhCCEEEEEE-cCCccCcHHHHHHHHHHHH---cCCCeEEEEE
Confidence 346799999999 3344566677899999887765 4444322 2334445544 3677 68999
Q ss_pred ccCcccC
Q 006958 211 TKLDLMD 217 (624)
Q Consensus 211 tK~D~~~ 217 (624)
||+|+.+
T Consensus 420 NKiDLv~ 426 (1289)
T 3avx_A 420 NKCDMVD 426 (1289)
T ss_dssp ECCTTCC
T ss_pred eeccccc
Confidence 9999985
No 187
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=4.2e-09 Score=109.77 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=26.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p 72 (624)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999874233333456666
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.70 E-value=4.3e-08 Score=111.64 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC-cccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (624)
+.+.|+|+|..++|||||+++|+... .+.+. +-+ .++..+.|+....
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~-g~v-----------------------~~g~~~~D~~~~E-------- 56 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKI-GEV-----------------------HDGAATMDWMEQE-------- 56 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccc-ccc-----------------------CCCceeecChhhH--------
Confidence 57899999999999999999997532 11100 000 0011122222211
Q ss_pred hhhCCCCCcccccEEEEEec----CCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc
Q 006958 113 RITGKSKQISNIPIQLSIYS----PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA 188 (624)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~----~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~ 188 (624)
+..| ..+....+.+...+ .....++||||||..+ +...+..+++.+|++|++|. ++....
T Consensus 57 ~~rg--iTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvD-a~~gv~ 120 (704)
T 2rdo_7 57 QERG--ITITSAATTAFWSGMAKQYEPHRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVYC-AVGGVQ 120 (704)
T ss_pred HhcC--ceeeeceEEEEECCccccCCceeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEEe-CCCCCc
Confidence 0111 11222223333221 1226899999999543 34567788899998777554 444433
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 189 TSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 189 ~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+. ..+.+.+...+.|.++|+||+|+...
T Consensus 121 ~qt-~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 121 PQS-ETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHH-HHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 322 22334444567899999999998754
No 189
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.70 E-value=1e-09 Score=122.64 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=32.6
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--------ccccHHHHHHHHHhCCCCCc-e
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--------DIATSDAIKLAREVDPTGER-T 206 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~--------d~~~~~~~~l~~~~d~~~~r-t 206 (624)
..++||||||..+.... +..++..+|++||+|..... ...+.+.+.++.. .+.+ +
T Consensus 255 ~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~i 318 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEI 318 (592)
T ss_dssp ----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCE
T ss_pred eEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeE
Confidence 67999999996543211 23466789987776644321 1223333434444 3555 8
Q ss_pred EEEeccCcccC
Q 006958 207 FGVLTKLDLMD 217 (624)
Q Consensus 207 i~VltK~D~~~ 217 (624)
|+|+||+|+.+
T Consensus 319 IvviNKiDl~~ 329 (592)
T 3mca_A 319 VVSVNKLDLMS 329 (592)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEecccccc
Confidence 89999999986
No 190
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.69 E-value=2.1e-08 Score=109.03 Aligned_cols=66 Identities=23% Similarity=0.252 Sum_probs=38.2
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---------ccHHHHHHHHHhCCCCCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDPTGER 205 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~---------~~~~~~~l~~~~d~~~~r 205 (624)
...++||||||.. .+......++..+|++||+| +++... .+.+.+.+++. .+.+
T Consensus 120 ~~~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilVv-Da~~g~~e~sf~~~~qt~e~l~~~~~---~~vp 182 (467)
T 1r5b_A 120 HRRFSLLDAPGHK-------------GYVTNMINGASQADIGVLVI-SARRGEFEAGFERGGQTREHAVLART---QGIN 182 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEE-ECSTTHHHHTTSTTCCHHHHHHHHHH---TTCS
T ss_pred CeEEEEEECCCcH-------------HHHHHHHhhcccCCEEEEEE-eCCcCccccccCCCCcHHHHHHHHHH---cCCC
Confidence 3579999999942 23444566788999888766 444432 23333334433 3666
Q ss_pred -eEEEeccCcccC
Q 006958 206 -TFGVLTKLDLMD 217 (624)
Q Consensus 206 -ti~VltK~D~~~ 217 (624)
+|+|+||+|+.+
T Consensus 183 ~iivviNK~Dl~~ 195 (467)
T 1r5b_A 183 HLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEEECTTSTT
T ss_pred EEEEEEECccCCC
Confidence 899999999964
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.68 E-value=2.1e-08 Score=102.59 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=54.2
Q ss_pred CCcEEEeCCCCccccCC-CCCccHHHHHHHHHHHhhcC-------------CCEEEEEEecCCCccccHHHHHHHHHhCC
Q 006958 136 VNLTLIDLPGLTKVAVE-GQPESIVEDIENMVRSYVEK-------------PSCIILAISPANQDIATSDAIKLAREVDP 201 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~-~~~~~~~~~i~~~~~~yi~~-------------~~~iiL~V~~a~~d~~~~~~~~l~~~~d~ 201 (624)
..++++||||+...... ..-..+...+......|+.. ++++++++.|....+...+ ..+++.+.+
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 57999999998532211 01122333333333355432 3345554555433344444 356677754
Q ss_pred CCCceEEEeccCcccCcccc--HHHHHhCcccccCCCeeEEEeCChhhhccCCcHHHHHHHH
Q 006958 202 TGERTFGVLTKLDLMDKGTN--ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKE 261 (624)
Q Consensus 202 ~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (624)
..++++|+||.|+.....- ..+.........+..|+.+...++ ++++.+..+.....+
T Consensus 155 -~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp -TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred -cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 5689999999999864321 011111111222345666666555 666666555544433
No 192
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.67 E-value=8.6e-08 Score=99.86 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.+.|+++|.+|+||||++|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 193
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.66 E-value=2.9e-08 Score=112.95 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=46.7
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||..+ +...+..+++.+|++|+++.+ ......+.. ...+.+...+.|.++|+||+|
T Consensus 76 ~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVvDa-~~g~~~~t~-~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVD-------------FTIEVERSMRVLDGAIVVFDS-SQGVEPQSE-TVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTT-------------CHHHHHHHHHHCSEEEEEEET-TTCSCHHHH-HHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccc-------------hHHHHHHHHHHCCEEEEEEEC-CCCcchhhH-HHHHHHHHcCCCEEEEEECCC
Confidence 46799999999643 245577888899988776554 433333322 223333345789999999999
Q ss_pred ccCc
Q 006958 215 LMDK 218 (624)
Q Consensus 215 ~~~~ 218 (624)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9754
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.64 E-value=2.2e-08 Score=116.34 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
...++||||||..+. ...+..+++.+|++|+++ ++......+.. .+.+.+...+.+.|+|+||+|
T Consensus 97 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVv-Da~~g~~~qt~-~~~~~~~~~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVV-DTIEGVCVQTE-TVLRQALGERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEE-ETTTBSCHHHH-HHHHHHHHTTCEEEEEEECHH
T ss_pred CceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEE-eCCCCCCHHHH-HHHHHHHHcCCCeEEEEECCC
Confidence 357899999997542 345778889999877755 55544444432 233344445789999999999
Q ss_pred ccC
Q 006958 215 LMD 217 (624)
Q Consensus 215 ~~~ 217 (624)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 873
No 195
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.62 E-value=3e-08 Score=104.32 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=49.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
.-.+|++||.+|+|||||+|+|+|..+.......||..|..-.+. . ++. .+ ..+. .
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~-v------------~~~------r~-~~l~----~ 76 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVP-V------------PDE------RF-DFLC----Q 76 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEE-C------------CCH------HH-HHHH----H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEE-E------------CCc------cc-eeec----c
Confidence 345899999999999999999999875222333466655332210 0 000 00 0000 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN 184 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~ 184 (624)
..... . . ....++||||||+...... .+.+.+....|++++|+|+++| ++.
T Consensus 77 ~~~p~--------~--~---~~~~i~lvDtpGl~~~as~------~~glg~~~l~~ir~aD~Il~Vv-D~~ 127 (396)
T 2ohf_A 77 YHKPA--------S--K---IPAFLNVVDIAGLVKGAHN------GQGLGNAFLSHISACDGIFHLT-RAF 127 (396)
T ss_dssp HHCCS--------E--E---ECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEE-EC-
T ss_pred ccCcc--------c--c---cccccEEEECCCcccccch------hhHHHHHHHHHHHhcCeEEEEE-ecC
Confidence 00000 0 0 0135899999999875432 2223345678899999877655 443
No 196
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.58 E-value=1.2e-08 Score=107.54 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 47999999999999999999987
No 197
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.56 E-value=3.3e-07 Score=95.14 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.-..|+++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999974
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.53 E-value=1.9e-07 Score=93.12 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=23.2
Q ss_pred cCCCCCeEEEECCCCCCHHHHHHHhh
Q 006958 31 LWEALPSVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 31 ~~~~lP~IvvvG~~ssGKSSllnal~ 56 (624)
.+-..+.++++|..||||||++++|+
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 34577899999999999999999999
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.52 E-value=7.7e-08 Score=100.80 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=29.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEE
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVL 75 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~ 75 (624)
..|++||.+|||||||+|+|+|..........||..|+.-
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g 41 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee
Confidence 4799999999999999999998753223334567777443
No 200
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.51 E-value=3.3e-08 Score=104.02 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
..|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 479999999999999999999974
No 201
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.49 E-value=3.1e-07 Score=92.26 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=49.9
Q ss_pred CCcEEEeCCCCccccCCCCC-ccHHHHHHHHHHHhh--------------cCCCEEEEEEecCCCccccHHHHHHHHHhC
Q 006958 136 VNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYV--------------EKPSCIILAISPANQDIATSDAIKLAREVD 200 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~-~~~~~~i~~~~~~yi--------------~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d 200 (624)
+.++++|+||+......... +.+.+.+......+. ..+++.++++.+....+...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 47899999998764433221 122333322222222 135777776777766666666 44777776
Q ss_pred CCCCceEEEeccCcccCcc
Q 006958 201 PTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (624)
.. .++|.|+||+|.+.+.
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 65 8999999999998754
No 202
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.49 E-value=9.9e-08 Score=105.47 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=78.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
+.-.|+|||...+|||||.++|+-.. |...+.- .+. . + ...+..+.|+..+. +
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~t------G~i~~~G-~V~---~--~-------~~~~~~~~D~~~~E------r-- 82 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFG------GAIQMAG-SVK---A--R-------KAARHATSDWMAME------R-- 82 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHT------TCHHHHH-HHH---H--C------------------------------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhc------Ccccccc-eee---c--C-------ccccccccCChHHH------H--
Confidence 45679999999999999999997322 1111000 000 0 0 00001122222221 1
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
.++..+....+.+.. +...++||||||..+... -+.+.++-.|+.|++| +|..+...+...
T Consensus 83 --eRGITI~s~~~~~~~---~~~~iNlIDTPGHvDF~~-------------Ev~raL~~~DgAvlVv-da~~GV~~qT~~ 143 (548)
T 3vqt_A 83 --ERGISVTTSVMQFPY---RDRVVNLLDTPGHQDFSE-------------DTYRVLTAVDSALVVI-DAAKGVEAQTRK 143 (548)
T ss_dssp -------CTTTEEEEEE---TTEEEEEECCCCGGGCSH-------------HHHHHHHSCSEEEEEE-ETTTBSCHHHHH
T ss_pred --HCCCcEeeceEEEEE---CCEEEEEEeCCCcHHHHH-------------HHHHHHHhcCceEEEe-ecCCCcccccHH
Confidence 112334455555543 346799999999776532 2667778899887755 566666665543
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+.+.+...+.|.|+++||+|....
T Consensus 144 -v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 144 -LMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp -HHHHHHHTTCCEEEEEECTTSCCC
T ss_pred -HHHHHHHhCCceEEEEecccchhc
Confidence 445666678999999999998654
No 203
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.47 E-value=1.1e-07 Score=107.61 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=77.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
....|+++|+.++|||||+++|++........|.+ ..+..+.|+.... +
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-----------------------~~g~~~~d~~~~e--------~ 56 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-----------------------EEGTTTTDYTPEA--------K 56 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-----------------------GGTCCSSCCSHHH--------H
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-----------------------cCCcccccCCHHH--------H
Confidence 45789999999999999999999754210011110 0011222222111 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
..| .++...... +.. +...++||||||..+ +...+..+++.+|.+++++. +......+..
T Consensus 57 ~~g--iti~~~~~~--~~~-~~~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 57 LHR--TTVRTGVAP--LLF-RGHRVFLLDAPGYGD-------------FVGEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp HTT--SCCSCEEEE--EEE-TTEEEEEEECCCSGG-------------GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred hcC--CeEEecceE--Eee-CCEEEEEEeCCCccc-------------hHHHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 111 222222222 222 246789999999543 24557788889998877665 4444433322
Q ss_pred HHHHHhCCCCCceEEEeccCccc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (624)
.+.+.+...+.+.|+|+||+|+.
T Consensus 117 ~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 117 RAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHccCCEEEEecCCchh
Confidence 23344434578999999999997
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.43 E-value=3.8e-07 Score=99.25 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~r-ti~VltK~D 214 (624)
.++.||||||..... ..+...+.... .++ .+|.+++ |+++..... +...++.+... .+ +++|+||+|
T Consensus 184 ~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~vll-VvDa~~g~~---~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 184 FEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNIVY-VMDASIGQA---CEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp CCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEEEE-EEETTCCTT---HHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceEEE-EEecccccc---HHHHHHHHHhh-cCceEEEEeCCc
Confidence 689999999976421 11222233222 233 7887665 445554332 33344444332 45 589999999
Q ss_pred ccCccccHHHH
Q 006958 215 LMDKGTNALEV 225 (624)
Q Consensus 215 ~~~~~~~~~~~ 225 (624)
....+..+..+
T Consensus 252 ~~~~~g~~l~~ 262 (504)
T 2j37_W 252 GHAKGGGALSA 262 (504)
T ss_dssp SCCCCTHHHHH
T ss_pred cccchHHHHHH
Confidence 98665544443
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.38 E-value=1.9e-07 Score=106.74 Aligned_cols=137 Identities=12% Similarity=0.172 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
++-.|+|||+-.+|||||.++|+-.. |...+.. .+. .+..++|+.... +
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~~g-~v~----------------~~~~~~D~~~~E------~-- 60 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHKLG-EVH----------------DGAATTDWMVQE------Q-- 60 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHHC------------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCcCc-eec----------------CCCccCCChHHH------H--
Confidence 45689999999999999999998332 2211111 000 011222322211 1
Q ss_pred hhCCCCCcccccEEEEEecC----CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc
Q 006958 114 ITGKSKQISNIPIQLSIYSP----NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT 189 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~----~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~ 189 (624)
.++..+....+.+...+. +...++||||||..+. ..-+.+.++-+|+.|++| ++..+...
T Consensus 61 --eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-------------~~Ev~~aLr~~DgavlvV-DaveGV~~ 124 (709)
T 4fn5_A 61 --ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------------TIEVERSLRVLDGAVVVF-CGTSGVEP 124 (709)
T ss_dssp ---------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-------------HHHHHHHHHHCSEEEEEE-ETTTCSCH
T ss_pred --HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-------------HHHHHHHHHHhCeEEEEE-ECCCCCch
Confidence 122334456666665543 2357999999997654 333566777799877755 56666665
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 190 SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 190 ~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
+... +.+++...+.|.|+|+||+|....
T Consensus 125 qT~~-v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 125 QSET-VWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHHH-HHHHHHHHTCCEEEEEECSSSTTC
T ss_pred hHHH-HHHHHHHcCCCeEEEEccccccCc
Confidence 5443 555566668999999999998643
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.37 E-value=4e-06 Score=89.36 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=49.6
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.++.||||||..... ......+..+ ..+..+|.++| |+++.. .+++...++.+.+....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i--~~~~~pd~vlL-VvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI--SNVIHPHEVIL-VIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH--HHHHCCSEEEE-EEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH--HHhhcCceEEE-EEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 689999999965421 1122223322 22335786655 555543 244555667666556677899999999
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
...+..+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 877655555543
No 207
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.35 E-value=1e-06 Score=85.32 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|.|+++|.+|||||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999975
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=3.2e-07 Score=96.76 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=31.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc-ccccccccccccEE
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLV 74 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~-lP~~~~~~Tr~p~~ 74 (624)
.-..|++||.+|||||||+|+|+|..+ .......||..|..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 345899999999999999999999765 23333456666643
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.32 E-value=2.1e-07 Score=104.86 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=78.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (624)
-.|+|+|+..+|||||.++|+-.. |..++.- .. ..+..+.|+.... +. .
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~------G~i~~~g------~v-----------~~g~~~~D~~~~E------re--R 51 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNS------GAITELG------SV-----------DKGTTRTDNTLLE------RQ--R 51 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHH------TCCSSCS------SC-----------CCSCCSTTCSTTH------HH--H
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc------CCCcccc------cc-----------ccCCcccCCcHHH------Hh--C
Confidence 468999999999999999997321 1111110 00 0112233443322 11 1
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006958 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (624)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l 195 (624)
| ..+....+.+. .+...++||||||..+. ..-+.+.++-+|+.|++| +|..+...+... +
T Consensus 52 G--ITI~s~~~~~~---~~~~~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVV-Da~~GV~~qT~~-v 111 (638)
T 3j25_A 52 G--ITIQTGITSFQ---WENTKVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLI-SAKDGVQAQTRI-L 111 (638)
T ss_dssp S--SCSSCCCCCCB---CSSCBCCCEECCCSSST-------------HHHHHHHHTTCSEEECCE-ESSCTTCSHHHH-H
T ss_pred C--CcEEeeeEEEE---ECCEEEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEE-eCCCCCcHHHHH-H
Confidence 2 22223333332 23467999999996653 333667788899887755 566666655432 4
Q ss_pred HHHhCCCCCceEEEeccCcccCc
Q 006958 196 AREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+.+...+.|.|+++||+|....
T Consensus 112 ~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 112 FHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTCSCEECCEECCSSSC
T ss_pred HHHHHHcCCCeEEEEeccccccC
Confidence 45555568899999999998654
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.25 E-value=4.5e-06 Score=88.56 Aligned_cols=121 Identities=24% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEEeCCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (624)
..+.|+++|+.|||||||+|+|+|.. -|....+....+ . +.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~-~p~~GsI~~~g~---~----------------------------------~t- 108 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG-NEEEGAAKTGVV---E----------------------------------VT- 108 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC-TTSTTSCCCCC------------------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC-CccCceEEECCe---e----------------------------------cc-
Confidence 34689999999999999999999974 233222222111 0 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006958 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (624)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~ 193 (624)
...+. ...+..++++++|+||+.... ....+.+..+ -+.+.+..+. .+... ...++ +
T Consensus 109 ---------~~~~v--~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~~~~~--lS~G~-~~kqr-v 165 (413)
T 1tq4_A 109 ---------MERHP--YKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYDFFII--ISATR-FKKND-I 165 (413)
T ss_dssp ---------CCCEE--EECSSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCSEEEE--EESSC-CCHHH-H
T ss_pred ---------eeEEe--ccccccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccCCeEE--eCCCC-ccHHH-H
Confidence 00011 112334689999999986421 1122222222 1334454433 34432 23343 3
Q ss_pred HHHHHhCCCCCceEEEeccCccc
Q 006958 194 KLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (624)
.+++.+...+.|+++|+||+|++
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCccc
Confidence 47777766789999999999975
No 211
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.18 E-value=2.1e-06 Score=86.71 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
.-.+|++||.+|+|||||+|+|+|...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 345899999999999999999999875
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.16 E-value=4.6e-06 Score=88.92 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
.+++.||||||....+. .......+..+. ..+ .++.++|++ ++... +++...++.+...-..+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd~vlLVl-Da~~g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPDDVILVI-DASIG---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCSEEEEEE-EGGGG---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCcceEEEE-eCccc---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 47899999999643111 112233333322 223 567666654 44432 3344455555544456889999999
Q ss_pred ccCccccHHHHHh
Q 006958 215 LMDKGTNALEVLE 227 (624)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (624)
....+..+..+..
T Consensus 250 ~~a~~G~als~~~ 262 (433)
T 3kl4_A 250 GTAKGGGALSAVV 262 (433)
T ss_dssp GCSCHHHHHHHHH
T ss_pred ccccchHHHHHHH
Confidence 9876655555443
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.13 E-value=5.5e-06 Score=91.62 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..+.|+|||.||+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 567899999999999999999999874
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.03 E-value=4e-06 Score=81.36 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..|.|+|+|.+|||||||+++|++..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999997643
No 215
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.02 E-value=1.8e-05 Score=84.60 Aligned_cols=78 Identities=26% Similarity=0.239 Sum_probs=45.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCC-c-eEEEec
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGE-R-TFGVLT 211 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~-~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~-r-ti~Vlt 211 (624)
..++.||||||.... ....+..+.. ..+..+|.+++ |+++.... ++...++.+.+. . + +.+|+|
T Consensus 180 ~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d~vll-Vvda~~g~---~~~~~~~~~~~~-~~~i~gvVln 246 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPDEIIL-VIDGTIGQ---QAGIQAKAFKEA-VGEIGSIIVT 246 (432)
T ss_dssp SCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCSEEEE-EEEGGGGG---GHHHHHHHHHTT-SCSCEEEEEE
T ss_pred CCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCcceeE-EeeccccH---HHHHHHHHHhhc-ccCCeEEEEe
Confidence 468999999997642 1222333311 12236887665 44554332 344455655543 3 4 889999
Q ss_pred cCcccCccccHHHH
Q 006958 212 KLDLMDKGTNALEV 225 (624)
Q Consensus 212 K~D~~~~~~~~~~~ 225 (624)
|+|....+..+..+
T Consensus 247 K~D~~~~~g~~l~~ 260 (432)
T 2v3c_C 247 KLDGSAKGGGALSA 260 (432)
T ss_dssp CSSSCSTTHHHHHH
T ss_pred CCCCccchHHHHHH
Confidence 99987655444444
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.88 E-value=9.3e-06 Score=81.07 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~~ 60 (624)
..|++||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999999865
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.84 E-value=3.6e-05 Score=78.48 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=49.0
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.++.++||+|...... ..+.++..+-..+.+..+..|+.++| +.++... ++....++.+......+++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~~lL-vLDa~t~---~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKEVWL-VLDAVTG---QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSEEEE-EEETTBC---THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCeEEE-EEcHHHH---HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4577999999754221 11222333333344455567886666 4455432 33444444443222468999999998
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
...+..+..+..
T Consensus 260 ~a~gg~~l~i~~ 271 (304)
T 1rj9_A 260 TAKGGVLIPIVR 271 (304)
T ss_dssp SCCCTTHHHHHH
T ss_pred cccccHHHHHHH
Confidence 777666665543
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.68 E-value=0.00026 Score=76.17 Aligned_cols=83 Identities=23% Similarity=0.306 Sum_probs=48.1
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHH---HHHHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIEN---MVRSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~---~~~~yi-~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~Vlt 211 (624)
.++.||||+|...... .....+.. .++... ..++.++|++ ++.. .++++..++.+...-..+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvL-Datt---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTI-DAST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEE-EGGG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEe-cCcc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 5689999999753211 12222222 222222 2466666654 4432 24555566665443346789999
Q ss_pred cCcccCccccHHHHHh
Q 006958 212 KLDLMDKGTNALEVLE 227 (624)
Q Consensus 212 K~D~~~~~~~~~~~l~ 227 (624)
|+|-...+..+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998777776666654
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.64 E-value=0.00024 Score=73.13 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=48.7
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
.++.++||+|...... .....+..+.... .+|-.++++.+.. .+++...++.+...-..+++|+||.|.
T Consensus 212 ~d~vliDtaG~~~~~~-----~l~~eL~~i~ral--~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETNR-----NLMDEMKKIARVT--KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTTT-----CHHHHHHHHHHHH--CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHHH-----HHHHHHHHHHHHh--cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 4678899999754322 2344444433322 3665555554332 256666666665444568999999998
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
...+..+..++.
T Consensus 281 ~a~~G~~l~~~~ 292 (328)
T 3e70_C 281 DARGGAALSISY 292 (328)
T ss_dssp CSCCHHHHHHHH
T ss_pred ccchhHHHHHHH
Confidence 766655555543
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=0.00019 Score=72.78 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~r-ti~VltK~D 214 (624)
.++.||||||....... +.....+..+ ..+..+|.+++++. +.. .+++...++.+.+ ..+ +.+|+||+|
T Consensus 181 ~D~ViIDTpg~~~~~~~---~~l~~el~~i--~~~~~~d~vllVvd-a~~---g~~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEE---AALLEEMKNI--YEAIKPDEVTLVID-ASI---GQKAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp CSEEEEECCCSCCTTCH---HHHHHHHHHH--HHHHCCSEEEEEEE-GGG---GGGHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred CCEEEEeCCCCcccccH---HHHHHHHHHH--HHHhcCCEEEEEee-CCc---hHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 68999999997641010 0111112221 12336787776554 432 2445555666554 345 778999999
Q ss_pred ccCccccHHHHHh
Q 006958 215 LMDKGTNALEVLE 227 (624)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (624)
....+..+..+..
T Consensus 251 ~~~~~g~~~~~~~ 263 (297)
T 1j8m_F 251 GTAKGGGALSAVA 263 (297)
T ss_dssp GCTTHHHHHHHHH
T ss_pred CCcchHHHHHHHH
Confidence 8765544444443
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.60 E-value=0.0005 Score=69.72 Aligned_cols=79 Identities=13% Similarity=0.163 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~--~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
+++.|+||||..... ...+.++. ..+. .++.+++ |+++..+ ..+..++++.+... ...-+|+||.
T Consensus 183 ~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~~~~l-Vl~at~~--~~~~~~~~~~~~~l-~~~giVltk~ 249 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSIQSFL-VLSATAK--YEDMKHIVKRFSSV-PVNQYIFTKI 249 (296)
T ss_dssp SSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTEEEEE-EEETTBC--HHHHHHHTTTTSSS-CCCEEEEECT
T ss_pred CCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCCeEEE-EEECCCC--HHHHHHHHHHHhcC-CCCEEEEeCC
Confidence 789999999976421 22333332 2333 3555444 5555533 23444445544432 2345678999
Q ss_pred cccCccccHHHHHh
Q 006958 214 DLMDKGTNALEVLE 227 (624)
Q Consensus 214 D~~~~~~~~~~~l~ 227 (624)
|....+..+..++.
T Consensus 250 D~~~~~g~~~~~~~ 263 (296)
T 2px0_A 250 DETTSLGSVFNILA 263 (296)
T ss_dssp TTCSCCHHHHHHHH
T ss_pred CcccchhHHHHHHH
Confidence 98876665666654
No 222
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.56 E-value=1.8e-05 Score=84.66 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.-.|+|+|.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4567999999999999999999974
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.56 E-value=8.6e-05 Score=79.40 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~-~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~r-ti~VltK~ 213 (624)
.++.||||||..... ...+..+.. .++..++.+++++ ++... +++...++.+.+ +.+ +-+|+||+
T Consensus 184 ~D~VIIDTpG~l~~~--------~~l~~~L~~~~~~~~p~~vllVv-da~~g---~~~~~~~~~f~~-~l~i~gvVlnK~ 250 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD--------EAMMDEIKQVHASINPVETLFVV-DAMTG---QDAANTAKAFNE-ALPLTGVVLTKV 250 (433)
T ss_dssp CSEEEEECCCCCTTC--------HHHHHHHHHHHHHSCCSEEEEEE-ETTBC---TTHHHHHHHHHH-HSCCCCEEEECT
T ss_pred CCEEEEECCCccccc--------HHHHHHHHHHHHhhcCcceeEEe-ecchh---HHHHHHHHHHhc-cCCCeEEEEecC
Confidence 689999999965321 122222221 3455788776655 44432 344445555543 233 45799999
Q ss_pred cccCccccHHHHH
Q 006958 214 DLMDKGTNALEVL 226 (624)
Q Consensus 214 D~~~~~~~~~~~l 226 (624)
|....+..+..+.
T Consensus 251 D~~~~~g~~l~i~ 263 (433)
T 2xxa_A 251 DGDARGGAALSIR 263 (433)
T ss_dssp TSSSCCTHHHHHH
T ss_pred CCCccHHHHHHHH
Confidence 9876654444443
No 224
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.55 E-value=9.4e-05 Score=75.36 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHH---hh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRS---YV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~---yi-~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~Vl 210 (624)
.+++.|+||||.... ...+.+.+..+..- .+ ..++.++| |+++.. .++++..++.+...-.-+-+|+
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~~vll-Vlda~t---~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPHETLL-VIDATT---GQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCSEEEE-EEEGGG---HHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCcEEEE-EEECCC---CHHHHHHHHHHHhcCCCCEEEE
Confidence 368999999995221 11122223222211 12 24776666 445542 2445445555433234466789
Q ss_pred ccCcccCccccHHHHHh
Q 006958 211 TKLDLMDKGTNALEVLE 227 (624)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (624)
||.|....+..+..+..
T Consensus 257 Tk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 257 TKLDGTAKGGITLAIAR 273 (306)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCccchHHHHHHHH
Confidence 99998877776666654
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.47 E-value=0.00095 Score=68.40 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHH---HHHHHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIE---NMVRSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~---~~~~~yi-~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~Vl 210 (624)
..++.||||||...... .....+. ..+...+ ..+|.+++++ ++.. .++++..++.+.+.-.-+=+|+
T Consensus 191 ~yD~VIIDTpg~l~~~~-----~l~~eL~~~~~vi~~~~p~~~d~vllVl-~a~~---~~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKT-----NLMAELEKMNKIIQQVEKSAPHEVLLVI-DATT---GQNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGHH-----HHHHHHHHHHHHHHTTCTTCCSEEEEEE-EGGG---THHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCcccccH-----HHHHHHHHHHHHHhcccCCCCceEEEEE-ECCC---cHHHHHHHHHHhhcCCCcEEEE
Confidence 36899999999664211 0111111 1121112 2477666654 4442 2555556666665433445789
Q ss_pred ccCcccCccccHHHHHh
Q 006958 211 TKLDLMDKGTNALEVLE 227 (624)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (624)
||+|....+..+..+..
T Consensus 262 tk~d~~~~~g~~~~~~~ 278 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIKE 278 (320)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCCCchhHHHHHHH
Confidence 99998766655555543
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.27 E-value=0.00041 Score=73.72 Aligned_cols=79 Identities=29% Similarity=0.317 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~-~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D 214 (624)
.++.||||||..... ...+.++.. ..+-.++.++|++. +.. .+++...++.+.+.-..+-+|+||+|
T Consensus 181 ~DvVIIDTaG~l~~d--------~~l~~el~~i~~~~~pd~vlLVvD-a~t---gq~av~~a~~f~~~l~i~GVIlTKlD 248 (425)
T 2ffh_A 181 RDLILVDTAGRLQID--------EPLMGELARLKEVLGPDEVLLVLD-AMT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (425)
T ss_dssp CSEEEEECCCCSSCC--------HHHHHHHHHHHHHHCCSEEEEEEE-GGG---TTHHHHHHHHHHHHTCCCEEEEESGG
T ss_pred CCEEEEcCCCccccc--------HHHHHHHHHhhhccCCceEEEEEe-ccc---hHHHHHHHHHHHhcCCceEEEEeCcC
Confidence 689999999965321 122222211 11225777666554 432 25565666665443234677899999
Q ss_pred ccCccccHHHHH
Q 006958 215 LMDKGTNALEVL 226 (624)
Q Consensus 215 ~~~~~~~~~~~l 226 (624)
....+..+..+.
T Consensus 249 ~~~~~g~alsi~ 260 (425)
T 2ffh_A 249 GDARGGAALSAR 260 (425)
T ss_dssp GCSSCHHHHHHH
T ss_pred CcccHHHHHHHH
Confidence 876655444443
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.12 E-value=0.0018 Score=67.25 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=48.2
Q ss_pred CcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006958 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 137 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
+..++||.|+...... .+.++..+-..+.+..+.+|+-++|+++ +..... ....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD---~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLN---MLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHH-HHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGG---GHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCC---HHHHHHHHHHhcCCeEEEEecCccc
Confidence 4678999998643211 1122332333344445567886666665 443332 2222333332234689999999988
Q ss_pred CccccHHHHHh
Q 006958 217 DKGTNALEVLE 227 (624)
Q Consensus 217 ~~~~~~~~~l~ 227 (624)
..+.....+..
T Consensus 317 ~~gG~~lsi~~ 327 (359)
T 2og2_A 317 ARGGCVVSVVE 327 (359)
T ss_dssp SCTHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 77766666654
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.05 E-value=0.0016 Score=66.22 Aligned_cols=86 Identities=23% Similarity=0.249 Sum_probs=46.6
Q ss_pred CcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006958 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 137 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
+..++||.|+...... .+.++..+-..+.+..+.+|+-++|+++ +....... ..++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~---~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNML---PQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH---HHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHH---HHHHHHHHhcCCCEEEEeCCCCC
Confidence 4678999998643211 1122222222333334467886666565 54333222 22333332234689999999988
Q ss_pred CccccHHHHHh
Q 006958 217 DKGTNALEVLE 227 (624)
Q Consensus 217 ~~~~~~~~~l~ 227 (624)
..+.....+..
T Consensus 260 ~~~g~~l~~~~ 270 (302)
T 3b9q_A 260 ARGGCVVSVVE 270 (302)
T ss_dssp SCTHHHHHHHH
T ss_pred CccChheehHH
Confidence 77666666554
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.83 E-value=0.002 Score=65.21 Aligned_cols=81 Identities=27% Similarity=0.363 Sum_probs=44.3
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~ 215 (624)
+++.|+||||..... ......+..+.. .+ .++.+++++ ++.. .+++...++.+.+.-..+-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~d-----~~~~~~l~~~~~-~~-~~~~~~lv~-~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQID-----EPLMGELARLKE-VL-GPDEVLLVL-DAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCC-----HHHHHHHHHHHH-HH-CCSEEEEEE-EGGG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCcccc-----HHHHHHHHHHhh-hc-CCCEEEEEE-eCCC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 689999999965321 111222222222 22 577666544 4432 255555555554322234578999998
Q ss_pred cCccccHHHHHh
Q 006958 216 MDKGTNALEVLE 227 (624)
Q Consensus 216 ~~~~~~~~~~l~ 227 (624)
...+..+.++..
T Consensus 250 ~~~~g~~~~~~~ 261 (295)
T 1ls1_A 250 DARGGAALSARH 261 (295)
T ss_dssp CSSCHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 766655555543
No 230
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.37 E-value=0.003 Score=65.80 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc---------cccHHHHHHHHHhC----C
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---------IATSDAIKLAREVD----P 201 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d---------~~~~~~~~l~~~~d----~ 201 (624)
...+.+||||| ++..+.+...|+++++++|+|+...+-| -.-.++..+...+. .
T Consensus 200 ~~~l~i~Dt~G-------------q~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGG-------------QRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccc-------------hhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 46799999999 3445777888999999988876555421 12233444444432 1
Q ss_pred CCCceEEEeccCcccC
Q 006958 202 TGERTFGVLTKLDLMD 217 (624)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (624)
.+.++|+|+||+|+..
T Consensus 267 ~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLE 282 (362)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCCEEEEEEChhhhh
Confidence 3689999999999864
No 231
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.30 E-value=0.00099 Score=69.18 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=48.2
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc---------cccHHHHHHHHHhCC----
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---------IATSDAIKLAREVDP---- 201 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d---------~~~~~~~~l~~~~d~---- 201 (624)
...+.+|||+|- +..+.+...|.++++++|+|+...+.| -.-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQ-------------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQ-------------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCS-------------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCc-------------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 467999999992 233667788999999988877554422 122344445544422
Q ss_pred CCCceEEEeccCcccC
Q 006958 202 TGERTFGVLTKLDLMD 217 (624)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (624)
.+.++|+|+||+|+..
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 3689999999999863
No 232
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.18 E-value=0.013 Score=55.15 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC--CCCceEEEeccC
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP--TGERTFGVLTKL 213 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~--~~~rti~VltK~ 213 (624)
.++.|||+||... ......+..+|.+|+++.+...+......++.++.+.. .+.+..+|+|++
T Consensus 76 yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 6899999998542 12234455588777655544333112223334443321 134668899999
Q ss_pred ccc
Q 006958 214 DLM 216 (624)
Q Consensus 214 D~~ 216 (624)
|.-
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 853
No 233
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.15 E-value=0.0024 Score=64.79 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=41.1
Q ss_pred CcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006958 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (624)
Q Consensus 137 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~ 216 (624)
.+.+||| .-+ ++.+...|++++|++|+|+...+.+........+...+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~--qer-------------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHR-------------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCC-------------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccc-------------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7999998 111 1234457999999887765444333222222223333323478999999999997
Q ss_pred Cc
Q 006958 217 DK 218 (624)
Q Consensus 217 ~~ 218 (624)
+.
T Consensus 129 ~~ 130 (301)
T 1u0l_A 129 DE 130 (301)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 234
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.14 E-value=0.0019 Score=65.52 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
-.++++|.+|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999974
No 235
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.94 E-value=0.005 Score=63.00 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecC---------CCccccHHHHHHHHHhCC----
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA---------NQDIATSDAIKLAREVDP---- 201 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a---------~~d~~~~~~~~l~~~~d~---- 201 (624)
...+.+|||+| ++..+.++..|.++++++|+|+.-. +..-.-.++..+.+.+..
T Consensus 166 ~v~l~iwDtgG-------------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGG-------------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECC-------------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCC-------------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 46799999999 5666888899999999988877321 111222345555554422
Q ss_pred CCCceEEEeccCcccC
Q 006958 202 TGERTFGVLTKLDLMD 217 (624)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (624)
.+.++++|+||+|+..
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 4689999999999875
No 236
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.93 E-value=0.0074 Score=62.02 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=49.9
Q ss_pred CCCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC---------CccccHHHHHHHHHh----C
Q 006958 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN---------QDIATSDAIKLAREV----D 200 (624)
Q Consensus 134 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~---------~d~~~~~~~~l~~~~----d 200 (624)
+...+.+|||+| ++..+.++..|.++++++|+|+.... ..-...++..+...+ .
T Consensus 159 ~~v~l~iwDtaG-------------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGG-------------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCS-------------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCC-------------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 347899999999 56778999999999999888765431 111223344444333 2
Q ss_pred CCCCceEEEeccCcccC
Q 006958 201 PTGERTFGVLTKLDLMD 217 (624)
Q Consensus 201 ~~~~rti~VltK~D~~~ 217 (624)
..+.++|+|+||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 24689999999999875
No 237
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.43 E-value=0.011 Score=62.76 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~ 56 (624)
.+-.|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45578899999999999999665
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.30 E-value=0.0068 Score=57.29 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=27.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccc----cccccccccc
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLP----RGSGIVTRRP 72 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~~lP----~~~~~~Tr~p 72 (624)
.-..|+++|+.|||||||+++|.+. +| .+...+||.|
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~--~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ--NPEKFVYPVPYTTRPP 58 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH--CTTTEECCCCEECSCC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh--CCccEEeeecccccCC
Confidence 3447899999999999999999975 33 2334566666
No 239
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.13 E-value=0.0079 Score=56.33 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=26.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC--ccccccccccccc
Q 006958 38 VAVVGGQSSGKSSVLESVVGRD--FLPRGSGIVTRRP 72 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~~--~lP~~~~~~Tr~p 72 (624)
|||+|++|||||||+++|.... -+......+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 1334456677777
No 240
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.96 E-value=0.012 Score=61.77 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=47.4
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---------ccccHHHHHHHHHhC----C
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---------DIATSDAIKLAREVD----P 201 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~---------d~~~~~~~~l~~~~d----~ 201 (624)
...+.||||+|- +..+.++..|.++++++|+|+.-.+- .-.-.++..+...+. .
T Consensus 216 ~v~l~iwDtaGQ-------------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQ-------------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCS-------------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchh-------------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 367999999992 33467788899999998887654431 112234444444432 2
Q ss_pred CCCceEEEeccCcccC
Q 006958 202 TGERTFGVLTKLDLMD 217 (624)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (624)
.+.++|+|+||+|+..
T Consensus 283 ~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 283 RTISVILFLNKQDLLA 298 (402)
T ss_dssp SSCCEEEEEECHHHHH
T ss_pred CCCeEEEEEEChhhhh
Confidence 4678999999999854
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.88 E-value=0.0083 Score=60.84 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 164 NMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 164 ~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
.+.+.|++++|.+++++...+.+++....-+++..+...+.+.++|+||+|+.++
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 3445689999987765543333333332222333333357899999999999865
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.67 E-value=0.016 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|++|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46999999999999999999986
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.58 E-value=0.014 Score=54.10 Aligned_cols=23 Identities=9% Similarity=0.478 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999985
No 244
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.51 E-value=0.018 Score=56.06 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999973
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.50 E-value=0.015 Score=54.93 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..++|+|+.|||||||++.|.|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999984
No 246
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.50 E-value=0.019 Score=59.45 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|.+|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 79999999999999999999974
No 247
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.48 E-value=0.038 Score=55.27 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 163 ~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...+..+++++|.|+. |+++........ ..+.+.+ .+++.++|+||+|+.+.
T Consensus 14 ~~~~~~~l~~aDvVl~-VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 14 RREVTEKLKLIDIVYE-LVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHGGGCSEEEE-EEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEE-EEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 5567888999997666 555655444331 1123333 46899999999999874
No 248
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.41 E-value=0.018 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 249
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.38 E-value=0.019 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 250
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.34 E-value=0.025 Score=56.13 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999997
No 251
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.30 E-value=0.027 Score=55.09 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.28 E-value=0.022 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 253
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.25 E-value=0.022 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 254
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.25 E-value=0.011 Score=61.17 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=45.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecC--------C-CccccHHHHHHHHHhC----C
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA--------N-QDIATSDAIKLAREVD----P 201 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a--------~-~d~~~~~~~~l~~~~d----~ 201 (624)
...+.+|||+|- +..+.+...|.++++++|+|+.-. . ..-.-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQ-------------e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQ-------------RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCS-------------TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCc-------------hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 467999999992 333667788999999988876533 0 1112233444444432 2
Q ss_pred CCCceEEEeccCcccC
Q 006958 202 TGERTFGVLTKLDLMD 217 (624)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (624)
.+.++|+|+||+|+..
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 4689999999999864
No 255
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.24 E-value=0.021 Score=58.62 Aligned_cols=30 Identities=33% Similarity=0.666 Sum_probs=24.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~ 68 (624)
.++|+|..|||||||+++|+|. +|...|.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i 202 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEERII 202 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSCEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCcEE
Confidence 6899999999999999999996 34444433
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.21 E-value=0.022 Score=53.00 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|.+||||||+++.|+|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999996
No 257
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.21 E-value=0.023 Score=56.70 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999997
No 258
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.18 E-value=0.019 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999996
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.15 E-value=0.024 Score=55.31 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
-.++++|+.|||||||++.|+|.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999973
No 260
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.13 E-value=0.025 Score=54.82 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 261
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.12 E-value=0.024 Score=56.08 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 262
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.11 E-value=0.023 Score=59.05 Aligned_cols=30 Identities=20% Similarity=0.545 Sum_probs=24.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~ 68 (624)
.|+|+|..|||||||+++|+|. +|...|.+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I 206 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQRLI 206 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCceEE
Confidence 7999999999999999999996 34444433
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.11 E-value=0.017 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.-..|+|+|.+||||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457999999999999999999864
No 264
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.02 E-value=0.021 Score=53.67 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999986
No 265
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.02 E-value=0.025 Score=52.26 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|.++++|..|||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4689999999999999999999975
No 266
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.95 E-value=0.031 Score=56.52 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
-.++++|.+|||||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 478999999999999999999975
No 267
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.95 E-value=0.027 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 268
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.95 E-value=0.022 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-.++|+|+.|||||||++.|.|.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999996
No 269
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.94 E-value=0.029 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.92 E-value=0.022 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-.|+|+|.+|||||||++.|.|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999986
No 271
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.90 E-value=0.025 Score=61.52 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T 69 (624)
.|+|+|.+||||||++++|+|. +|.+.+++|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 3899999999999999999995 465555544
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.89 E-value=0.029 Score=55.32 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 273
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.87 E-value=0.029 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 68899999999999999999973
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.84 E-value=0.029 Score=55.17 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=24.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T 69 (624)
.++++|+.|||||||++.|+|.- |..+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 58899999999999999999973 43445443
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.81 E-value=0.024 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999985
No 276
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.74 E-value=0.025 Score=54.22 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++|+|+.|||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 277
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.74 E-value=0.033 Score=55.40 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999997
No 278
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.69 E-value=0.15 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=19.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~ 56 (624)
....|+|.|..|+||||+.-.|.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHH
Confidence 34578888999999999887765
No 279
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.66 E-value=0.035 Score=55.44 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 280
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.63 E-value=0.033 Score=55.20 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 281
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.52 E-value=0.034 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.41 E-value=0.037 Score=53.85 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 283
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.33 E-value=0.04 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 689999999999999998664
No 284
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.27 E-value=0.029 Score=56.77 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++|||+.|||||||++.|+|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999996
No 285
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.23 E-value=0.036 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999885
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.13 E-value=0.044 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.08 E-value=0.044 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.04 E-value=0.04 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999996
No 289
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.03 E-value=0.1 Score=49.40 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHH-HHHHHhCC----CCCceEEEeccC-cccCccc--cHHHHHhCc
Q 006958 159 VEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAI-KLAREVDP----TGERTFGVLTKL-DLMDKGT--NALEVLEGR 229 (624)
Q Consensus 159 ~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~-~~~~-~l~~~~d~----~~~rti~VltK~-D~~~~~~--~~~~~l~~~ 229 (624)
++.++.+++.|.++.|+||+||++++.+... .+.+ ++.+-++. .+.+.++..||. |+...-+ ++.+.+.-.
T Consensus 112 Q~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~ 191 (227)
T 3l82_B 112 RYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN 191 (227)
T ss_dssp -----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCc
Confidence 5678999999999999999988776553322 2222 12222222 467888888996 6643322 334444322
Q ss_pred ccccCCCeeE--EEeCChhhhccCCcHH
Q 006958 230 SYRLQHPWVG--IVNRSQADINKNVDMI 255 (624)
Q Consensus 230 ~~~l~~g~~~--v~~~s~~~~~~~~~~~ 255 (624)
. +...|+. +.+.+++++.++++++
T Consensus 192 ~--l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 192 L--LNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp G--GCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred C--CCCCEEEEEeECCCCcCHHHHHHHH
Confidence 2 3467763 4555666666655544
No 290
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.01 E-value=0.041 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999986
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.01 E-value=0.036 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.95 E-value=0.04 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++|+|+.||||||++++|.|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6999999999999999999995
No 293
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.91 E-value=0.022 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.|+|+|..+||||||++.|.|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.87 E-value=0.052 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999974
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.81 E-value=0.044 Score=55.41 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++|+|+.|||||||++.|.|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6999999999999999999985
No 296
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.79 E-value=0.058 Score=48.83 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.9
Q ss_pred CeEEEECCCCCCHHHHHHHh
Q 006958 36 PSVAVVGGQSSGKSSVLESV 55 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal 55 (624)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.72 E-value=0.046 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.68 E-value=0.062 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhh---CCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVV---GRD 59 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~---g~~ 59 (624)
...|+|+|.+||||||+++.|+ |..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3579999999999999999999 874
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.66 E-value=0.047 Score=50.66 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+++|.+||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 300
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.65 E-value=0.067 Score=55.68 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 160 EDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 160 ~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+.++++...|.+.++.+++ |+++... . ..+...++++-. +.++++|+||+|+.+..
T Consensus 57 e~f~~~l~~i~~~~~~il~-VvD~~d~-~-~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVK-IVDIFDF-N-GSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEE-EEETTSH-H-HHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCcEEEE-EEECCCC-c-ccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 5678888888888887665 5555432 1 222223333333 68999999999998754
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.53 E-value=0.061 Score=49.36 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|.|+++|.+|||||||+++|.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999999874
No 302
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.50 E-value=0.1 Score=48.02 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 9 GLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..++.++..+..+... .-.-++++|++|+|||||+.+|.|.
T Consensus 21 ~~~~~~~~~~~~~~~~---------~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPE---------EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHSCCGG---------GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc---------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555555444321 2346899999999999999999985
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.42 E-value=0.044 Score=52.22 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=24.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T 69 (624)
.++++|+.|||||||++.|+|. -|. +|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl--~p~-~G~I~ 53 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ--ALQ-SKQVS 53 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH--HHH-TTSCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCc-CCeee
Confidence 6899999999999999999996 244 35443
No 304
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.37 E-value=0.063 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-.++++|..|||||||+|+|. .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 368999999999999999999 5
No 305
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.36 E-value=0.071 Score=48.30 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999743
No 306
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.32 E-value=0.13 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
...|+|+|.+|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999999885
No 307
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.32 E-value=0.22 Score=48.07 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHHHHHHHhCCCCCceEEEeccC
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~-~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..+++|||+|+-.... +...+..+|.+|+++.+...++.. ....++.+.+.. .+..+|+||.
T Consensus 131 ~yD~viiD~pp~~~~~---------------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~--~~~~~v~N~~ 193 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHL---------------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI--KKVRYVINKV 193 (254)
T ss_dssp CCSEEEEEECTTCTTC---------------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC--SCEEEEEEEE
T ss_pred CCCEEEEeCCCcccHH---------------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC--ccEEEEEeCC
Confidence 4789999998844321 234557789877755543322211 112223344432 4577899999
Q ss_pred c
Q 006958 214 D 214 (624)
Q Consensus 214 D 214 (624)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 8
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.27 E-value=0.057 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46999999999999999999763
No 309
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.26 E-value=0.067 Score=52.88 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~ 64 (624)
.++++|+.|||||||++.|+|.. |.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~~ 57 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PYS 57 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCC
Confidence 68899999999999999999973 653
No 310
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.24 E-value=0.074 Score=53.78 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHhhcCCCEEEEEEecCC-CccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 167 RSYVEKPSCIILAISPAN-QDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 167 ~~yi~~~~~iiL~V~~a~-~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+..+.+.|.+++ |+++. .++......+++..+...+.+.++|+||+|+.++.
T Consensus 81 R~~~anvD~v~~-V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 81 RPPICNVDQAVL-VFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTTEECCCEEEE-EEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHHHhCCEEEE-EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 346889997665 55555 44444433334443445689999999999998763
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.18 E-value=0.06 Score=50.39 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|..||||||+++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999985
No 312
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.15 E-value=0.071 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999974
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.14 E-value=0.058 Score=54.82 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|.+|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 6889999999999999999996
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.03 E-value=0.069 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 315
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.00 E-value=0.077 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 68999999999999999999974
No 316
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.97 E-value=0.07 Score=55.16 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999999974
No 317
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.97 E-value=0.077 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999999974
No 318
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.96 E-value=0.077 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68999999999999999999973
No 319
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.90 E-value=0.062 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.-...+|+|+.+|||||++++|.+.
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3347899999999999999999875
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.88 E-value=0.05 Score=52.39 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=15.3
Q ss_pred eEEEECCCCCCHHHHHHHhh-CC
Q 006958 37 SVAVVGGQSSGKSSVLESVV-GR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~-g~ 58 (624)
.|+++|+.|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999999 86
No 321
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.86 E-value=0.081 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68999999999999999999974
No 322
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.80 E-value=0.093 Score=50.01 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~ 66 (624)
.++++|+++||||||+..|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 689999999999999999998533344433
No 323
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.79 E-value=0.082 Score=55.04 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68999999999999999999974
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.78 E-value=0.069 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999985
No 325
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.73 E-value=0.066 Score=55.40 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999996
No 326
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.71 E-value=0.075 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6889999999999999999997
No 327
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.67 E-value=1.2 Score=54.19 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC-CCCceEEEecc
Q 006958 158 IVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP-TGERTFGVLTK 212 (624)
Q Consensus 158 ~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~-~~~rti~VltK 212 (624)
.+++--.+++..++++.. |+.+.++..+.......+-+.++. ...+|++++++
T Consensus 1221 GQrQriaiARAllr~~~I--LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1221 GQKQRIAIARALVRNPKI--LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp HHHHHHHHHHHHHSCCSE--EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCE--EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 366777889999999993 446777654433332223344443 35688888875
No 328
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.64 E-value=0.088 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999999974
No 329
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.97 Score=47.85 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCC-eEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALP-SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP-~IvvvG~~ssGKSSllnal~g~ 58 (624)
..| -|.+.|+||+|||++..||.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 445 4999999999999999999864
No 330
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.40 E-value=0.097 Score=47.74 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.39 E-value=0.082 Score=49.60 Aligned_cols=24 Identities=42% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
...|+++|.+||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
No 332
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.37 E-value=0.11 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999863
No 333
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.31 E-value=0.1 Score=51.11 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhh---CCCc
Q 006958 35 LPSVAVVGGQSSGKSSVLESVV---GRDF 60 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~---g~~~ 60 (624)
-..|+++|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3579999999999999999999 8653
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.30 E-value=0.1 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+++|.+||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.17 E-value=0.086 Score=49.46 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.12 E-value=0.087 Score=51.27 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|+.|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.02 E-value=0.11 Score=49.04 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|.+||||||+.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999985
No 338
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.97 E-value=0.077 Score=56.15 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|+.||||||+|++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 339
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.94 E-value=0.065 Score=54.54 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~ 59 (624)
++|.++|+|..||||||+|+.|.|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999863
No 340
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.91 E-value=0.11 Score=46.46 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~ 56 (624)
+-+..+|+|+.+|||||+++||.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 33478999999999999999987
No 341
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.84 E-value=0.096 Score=54.52 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 160 EDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 160 ~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
+.++++...|.+.++.++++| ++.... .+-...+.+.+. +.+.++|+||+|+.+..
T Consensus 59 e~f~~~L~~~~~~~~lil~Vv-D~~d~~-~s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIV-DIFDFN-GSFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEE-ETTCSG-GGCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHhhccCcEEEEEE-ECCCCC-CchhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 456778888888888766655 544322 111111223232 68999999999998764
No 342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.78 E-value=0.12 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
.-|+++|.+||||||+.++|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999864
No 343
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.76 E-value=0.24 Score=50.87 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCccCCCCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
++-.+++++.+.+...-..+ ..|.|+++|.+|+||||+...|.+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g--------~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDN--------YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTC--------SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccC--------CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44455555555443332221 4678999999999999999998874
No 344
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.73 E-value=0.094 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|+.||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 345
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.66 E-value=0.088 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-.++|+|..|||||||++.|.|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999997
No 346
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.65 E-value=0.12 Score=48.50 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+++|.+||||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 347
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.57 E-value=0.11 Score=47.82 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 348
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.55 E-value=0.071 Score=55.11 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999973
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.50 E-value=0.089 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
-..++++|++|+|||+|+.+|.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999985
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.44 E-value=0.099 Score=52.89 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.44 E-value=0.13 Score=47.31 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 352
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.41 E-value=0.15 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
.+.|+++|.+||||||+...|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999963
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.40 E-value=0.11 Score=48.98 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+|+|.+||||||+++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.33 E-value=0.12 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999986
No 355
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.27 E-value=0.12 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.++++|+.|||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999994
No 356
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.16 E-value=0.14 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
|.|+++|.+||||||+-..|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 357
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.11 E-value=0.15 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.|+++|.+||||||+...|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 358
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.05 E-value=0.17 Score=46.81 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.-+.|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999754
No 359
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.99 E-value=0.95 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.8
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~-IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+ |.+.|+||+|||++..|+.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4555 999999999999999999864
No 360
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.97 E-value=0.1 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68999999999999999999974
No 361
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.80 E-value=0.16 Score=46.65 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+++|.+||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999973
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.79 E-value=0.15 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 363
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.76 E-value=1.3 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCC-eEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALP-SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP-~IvvvG~~ssGKSSllnal~g~ 58 (624)
..| -|.+.|+||+|||++..|+.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 445 4999999999999999999864
No 364
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.75 E-value=0.18 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~ 56 (624)
..+.|+++|.+||||||+...|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999998
No 365
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.64 E-value=0.19 Score=46.56 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
.+.|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 366
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.63 E-value=0.15 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g 57 (624)
..+..+|+|+.||||||++++|+.
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445788999999999999999983
No 367
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.59 E-value=0.13 Score=55.26 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.-+.++|+|+.|||||||++.|+|.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34789999999999999999999973
No 368
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.54 E-value=0.17 Score=47.41 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|++.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 369
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.53 E-value=0.16 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.||||||||+.|.|.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6999999999999999999996
No 370
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.45 E-value=0.15 Score=51.94 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|.+||||||+++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 371
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.39 E-value=0.2 Score=46.74 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.35 E-value=0.19 Score=47.52 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+|.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.16 E-value=0.2 Score=45.31 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 374
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.16 E-value=0.16 Score=56.12 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+++||+.|||||||++.|.|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999996
No 375
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.16 E-value=0.21 Score=55.36 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 376
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.11 E-value=0.16 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
-.++++|+.|||||||++.|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999996
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.98 E-value=0.21 Score=47.26 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 378
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.97 E-value=1.3 Score=46.82 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCC-eEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALP-SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP-~IvvvG~~ssGKSSllnal~g~ 58 (624)
..| -|.+.|+||+|||++..|+.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 445 4999999999999999999875
No 379
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.96 E-value=0.19 Score=55.73 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999996
No 380
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.95 E-value=0.18 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|..+|||||+.+.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.92 E-value=0.2 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 382
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.89 E-value=0.18 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
-..|+++|.+||||||+...|.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 383
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.87 E-value=0.18 Score=55.80 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+++||+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 384
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.77 E-value=6 Score=40.71 Aligned_cols=92 Identities=12% Similarity=-0.014 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccHHHHHHHHHhCCCCCceEEEeccC
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATSDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d-~~~~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..++.|||||.-.. ..+...+..+|.+++++.+.... ....++...++.+... .+.-+|.|+.
T Consensus 259 ~yD~VIID~p~~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~l~~~~~~l~~l~~~-~~~~vv~N~~ 322 (373)
T 3fkq_A 259 NYDEIIVDLPFSLE---------------IEKLKLLSKAWRIIVVNDGSQLSNYKFMRAYESVVLLEQN-DDINIIRNMN 322 (373)
T ss_dssp CCSEEEEECCCCCC---------------HHHHHHHTTCSEEEEEECCCHHHHHHHHHHHHHHHHHTTS-TTCCCGGGEE
T ss_pred CCCEEEEeCCCCCC---------------HHHHHHHHHCCEEEEEecCCchHHHHHHHHHHHHHHhccc-CCcEEEehhH
Confidence 46899999985321 12445677899877655443222 1135566666776653 3333334544
Q ss_pred cccCccccHHHHHhCcccccCCCeeEEEeCCh
Q 006958 214 DLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQ 245 (624)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 245 (624)
+....-.. .........+..+.+.++.+.
T Consensus 323 ~v~~~~~~---~~~~fl~~~~l~~lG~IP~D~ 351 (373)
T 3fkq_A 323 MIYNKFSN---KNSEMLSNISIKTIGGAPRYE 351 (373)
T ss_dssp EEECSCCT---TTCCCCCSCSCEEEEECCCCT
T ss_pred HHHHHHHH---HHHHHhhcCCccceeecCCCC
Confidence 43332211 111001134567777777654
No 385
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.73 E-value=0.18 Score=50.14 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~ 58 (624)
++++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 386
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.69 E-value=0.28 Score=45.78 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.6
Q ss_pred CCC-eEEEECCCCCCHHHHHHHhhC
Q 006958 34 ALP-SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 34 ~lP-~IvvvG~~ssGKSSllnal~g 57 (624)
..| .|+++|.++|||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344 799999999999999999864
No 387
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.68 E-value=0.22 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
+.|+++|.+||||||+...|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 388
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.64 E-value=0.22 Score=45.88 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+++|.++|||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 389
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.62 E-value=0.47 Score=47.31 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
-|+++|.+||||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 390
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.62 E-value=0.87 Score=45.28 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=17.0
Q ss_pred CeEEEEC---CCCCCHHHHHHHhh
Q 006958 36 PSVAVVG---GQSSGKSSVLESVV 56 (624)
Q Consensus 36 P~IvvvG---~~ssGKSSllnal~ 56 (624)
..|+|++ ..|+||||+.-.|.
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA 58 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFA 58 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHH
T ss_pred cEEEEEeccCCCCchHHHHHHHHH
Confidence 4567775 89999999988776
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.57 E-value=0.19 Score=49.00 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~ 58 (624)
++++|++|+|||||+++|.|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 392
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.53 E-value=0.26 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|..|||||||++.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 393
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.49 E-value=0.22 Score=45.86 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 394
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.36 E-value=0.19 Score=55.91 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+++||+.|||||||++.|.|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999996
No 395
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.36 E-value=0.27 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 396
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.30 E-value=0.18 Score=55.97 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 397
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.29 E-value=0.31 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999973
No 398
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.27 E-value=0.23 Score=48.80 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 399
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.24 E-value=0.24 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
...|+++|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999973
No 400
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.23 E-value=0.22 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
-..|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 401
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.20 E-value=0.2 Score=47.55 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|++|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999975
No 402
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.14 E-value=0.31 Score=53.35 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=24.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~T 69 (624)
.++|+|..|||||||++.|+|.. |..+|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEEE
Confidence 68899999999999999999973 33345443
No 403
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.13 E-value=0.22 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999984
No 404
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.11 E-value=0.11 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 405
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.96 E-value=1.8 Score=45.60 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.8
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~-IvvvG~~ssGKSSllnal~g~ 58 (624)
..|. |.+.|+||+|||++..||.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 4454 999999999999999999864
No 406
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.90 E-value=1.5 Score=50.91 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=18.1
Q ss_pred eEEEECCCCCCHHHHHHHh
Q 006958 37 SVAVVGGQSSGKSSVLESV 55 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal 55 (624)
.++++|+.++||||+|..+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.74 E-value=0.3 Score=46.41 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+++|.++|||||+...|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 408
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.74 E-value=0.61 Score=42.27 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+.++++|++|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999864
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.73 E-value=0.2 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++|+|++|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 410
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.72 E-value=0.34 Score=53.82 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=24.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~~lP~~~~~~ 68 (624)
.++++|..|||||||++.|+|.. +-.+|.+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I 413 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKV 413 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEE
Confidence 68999999999999999999973 3334544
No 411
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.71 E-value=0.27 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.64 E-value=0.23 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
-..|+++|.+||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 413
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.63 E-value=0.25 Score=45.48 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
+.|+++|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 414
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.61 E-value=0.26 Score=46.02 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
|.|++.|.+||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 415
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.54 E-value=0.41 Score=46.70 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999764
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.48 E-value=0.26 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 417
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.47 E-value=0.32 Score=45.84 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g 57 (624)
.-+..+|+|+.+|||||+++||.-
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999999863
No 418
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.45 E-value=0.25 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
+..++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999985
No 419
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.42 E-value=0.3 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
...|+|+|.++|||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999874
No 420
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=87.38 E-value=0.26 Score=49.03 Aligned_cols=96 Identities=10% Similarity=0.136 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCCcc-ccHHHH----HHHHHh-CCCCCceEEEecc-CcccCccc--cHHHHHhCcc
Q 006958 160 EDIENMVRSYVEKPSCIILAISPANQDI-ATSDAI----KLAREV-DPTGERTFGVLTK-LDLMDKGT--NALEVLEGRS 230 (624)
Q Consensus 160 ~~i~~~~~~yi~~~~~iiL~V~~a~~d~-~~~~~~----~l~~~~-d~~~~rti~VltK-~D~~~~~~--~~~~~l~~~~ 230 (624)
+.++.+.+.|.++.|+||+||++++.+. ...+.+ .++.+- ...+.+.++..|| -|+...-+ ++.+.+.-..
T Consensus 198 ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~ 277 (312)
T 3l2o_B 198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 277 (312)
T ss_dssp CCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc
Confidence 3458899999999999998777665532 222222 122121 1247888888897 47743322 3344443222
Q ss_pred cccCCCee--EEEeCChhhhccCCcHHHH
Q 006958 231 YRLQHPWV--GIVNRSQADINKNVDMIAA 257 (624)
Q Consensus 231 ~~l~~g~~--~v~~~s~~~~~~~~~~~~~ 257 (624)
++..|+ ++.+.+++++.++++++..
T Consensus 278 --l~r~W~Iq~csA~tGeGL~EGldWL~~ 304 (312)
T 3l2o_B 278 --LNHPWLVQDTEAETLTGFLNGIEWILE 304 (312)
T ss_dssp --GCSCEEEEEEETTTCTTHHHHHHHHHH
T ss_pred --CCCcEEEEecccCCCcCHHHHHHHHHH
Confidence 245676 4566677777777766654
No 421
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.37 E-value=1.9 Score=45.76 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCC-eEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALP-SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP-~IvvvG~~ssGKSSllnal~g~ 58 (624)
..| -|.+.|+||+|||++..||.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 345 4999999999999999999874
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.28 E-value=0.29 Score=46.24 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 423
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.15 E-value=0.25 Score=48.84 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~ 58 (624)
|+++|++|+|||||+++|.|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 424
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.05 E-value=0.26 Score=48.18 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+|+|.++||||||...|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999753
No 425
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.99 E-value=0.69 Score=44.76 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
...|++.|.++|||||+...|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 426
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.97 E-value=0.29 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|+.|||||||++.|+|.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999997
No 427
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.97 E-value=0.31 Score=46.18 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+|+|.+||||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 428
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.90 E-value=0.24 Score=45.27 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 429
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.78 E-value=0.3 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999864
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.61 E-value=0.36 Score=46.10 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 431
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.60 E-value=0.33 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.|||||||++.|+|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999973
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.50 E-value=0.45 Score=48.02 Aligned_cols=38 Identities=29% Similarity=0.273 Sum_probs=27.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC---c-------cccccccccccc
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGRD---F-------LPRGSGIVTRRP 72 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~~---~-------lP~~~~~~Tr~p 72 (624)
-|.|+|+|+++||||+|...|...- + +-++-.+.|+.|
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp 50 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKI 50 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCC
Confidence 3578999999999999999997541 0 123455666666
No 433
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.48 E-value=0.3 Score=46.15 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+...|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.42 E-value=0.28 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|++|+|||||+.+|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
No 435
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.28 E-value=0.38 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
...|++.|.+||||||+...|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 436
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.07 E-value=0.32 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.++++|++|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 437
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.72 E-value=0.34 Score=46.42 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++++|++|+|||||+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999985
No 438
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.69 E-value=0.41 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
-..|+++|.++|||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 439
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.57 E-value=0.45 Score=45.66 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
...|+++|.++|||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 440
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.44 E-value=0.077 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++|+|+.+||||||+++|.|.-
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35789999999999999999963
No 441
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.26 E-value=0.36 Score=49.38 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.|.+.++|++|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999984
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.24 E-value=0.43 Score=45.88 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|++.|.+||||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 443
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=85.11 E-value=0.39 Score=49.13 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g 57 (624)
+-.-.+++|+.||||||+++||..
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445678999999999999999854
No 444
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.04 E-value=3.7 Score=39.81 Aligned_cols=89 Identities=10% Similarity=0.166 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHHHHHHHhCCCCCceEEEeccC
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAIKLAREVDPTGERTFGVLTKL 213 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~-~~~~~l~~~~d~~~~rti~VltK~ 213 (624)
..++.|||+|+-.. ..+...+..+|.+|+++.+....... ....+.++.+.+ +.+..+|+|+.
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~ 207 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNL-FLPIFLIITRF 207 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTC-CCCEEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhc-cCCEEEEEecc
Confidence 46899999998432 12345566799877766654332211 122233344432 34677999999
Q ss_pred cccCccccHHHHHhCcccccCCCeeEEEeCC
Q 006958 214 DLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (624)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (624)
+......+..+.+.. ...+.+.++.+
T Consensus 208 ~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 208 KKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp CTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred cCcchHHHHHHHHhc-----CcccceecCcH
Confidence 543333345555542 34566666654
No 445
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.97 E-value=0.47 Score=48.90 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=31.0
Q ss_pred hhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006958 169 YVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (624)
Q Consensus 169 yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~~ 219 (624)
.+.+.|.+++ |++...++.....-+++......+.+.++|+||+|+.+..
T Consensus 127 i~anvD~v~i-v~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 127 IAANIDQIVI-VSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EEECCCEEEE-EEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HHhcCCEEEE-EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 4678997664 5555544444332222222223478899999999998764
No 446
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.86 E-value=0.67 Score=47.22 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.|+|+|.++||||+|-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 447
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.69 E-value=0.51 Score=44.62 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|+|||||+|.-..|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 448
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.60 E-value=0.49 Score=44.19 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g 57 (624)
-..|+++|..+|||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 449
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=84.46 E-value=0.4 Score=49.33 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.++|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 450
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.40 E-value=0.55 Score=44.82 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=19.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+.|+|+|.|+|||+|....|+..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 335678999999999999998854
No 451
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.38 E-value=0.5 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
+.|+|+|+++||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4688999999999999999974
No 452
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=84.32 E-value=0.4 Score=49.49 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 33 EALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 33 ~~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
++-...+++|+.|+||||++++|.+.
T Consensus 24 ~~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 24 FPEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EcCCeEEEECCCCCChhHHHHHHHHh
Confidence 34457899999999999999999874
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.20 E-value=0.48 Score=52.52 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 006958 38 VAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 38 IvvvG~~ssGKSSllnal~g~~ 59 (624)
++++|..|||||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 454
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.07 E-value=0.59 Score=45.12 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 455
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=84.04 E-value=0.84 Score=49.29 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
-|.++|++|+|||+|+++|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999985
No 456
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=83.77 E-value=0.48 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~~ 59 (624)
..++|+|+.|+|||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 468999999999999999999863
No 457
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.71 E-value=0.95 Score=40.86 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+-|+++|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 458
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.70 E-value=1.5 Score=40.66 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+-|++.|++|+|||+++.+|.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 459
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.69 E-value=0.47 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
-|+++|++|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.64 E-value=0.44 Score=50.63 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++++|+.++|||||++.|+|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999999963
No 461
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.64 E-value=0.49 Score=57.57 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++|||+.|||||||++.|.|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 7999999999999999999996
No 462
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=83.62 E-value=0.32 Score=47.94 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=32.6
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006958 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (624)
Q Consensus 163 ~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti~VltK~D~~~~ 218 (624)
...+...++++|.|+. |+++.......... +. +- +++.++|+||+|+++.
T Consensus 12 ~~~~~~~l~~~D~vl~-VvDar~P~~~~~~~-l~--ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVE-VRDARAPFATSAYG-VD--FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp THHHHHHHTTCSEEEE-EEETTSTTTTSCTT-SC--CT--TSEEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEE-EeeCCCCCcCcChH-HH--hc--CCCcEEEEECccCCCH
Confidence 3456788899997666 55555443332110 11 11 7899999999999875
No 463
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.60 E-value=0.44 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
+-...+++|+.|||||||+++|...
T Consensus 23 ~~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 23 SDRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CSSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999854
No 464
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.51 E-value=0.55 Score=46.82 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 465
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.36 E-value=1.1 Score=43.88 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..+-+.+.|++|+|||++..+|...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999764
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.35 E-value=0.51 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+|.+.+.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999986
No 467
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=83.32 E-value=0.51 Score=48.95 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~ 56 (624)
+-.-.+++|+.||||||+|+||.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999999986
No 468
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=83.26 E-value=1.2 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.++|+|+.++||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 6899999999999999998754
No 469
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.19 E-value=0.65 Score=43.21 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 445999999999999999999854
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.12 E-value=0.54 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g 57 (624)
.-..|+++|.+||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999985
No 471
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.08 E-value=0.59 Score=45.44 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g 57 (624)
..|+|.|.++|||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 472
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.04 E-value=0.56 Score=56.86 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.+++||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 473
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.04 E-value=0.67 Score=43.99 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
-+-+++.|++|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 474
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=82.87 E-value=0.19 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
.-..++++|..||||||||++|.+.
T Consensus 59 ~~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 59 GGGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp CSSEEEEEESHHHHHHHHTHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3448999999999999999999875
No 475
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.84 E-value=0.58 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|.++|.|++|+||||+++++.+.
T Consensus 43 ~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 476
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.73 E-value=0.48 Score=46.82 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.++|+|++|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 477
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.60 E-value=0.58 Score=46.50 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 006958 37 SVAVVGGQSSGKSSVLESVV 56 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~ 56 (624)
.|+|+|.+||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999997
No 478
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.12 E-value=1.1 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
-|.++|++|+|||+++.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999974
No 479
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.12 E-value=0.85 Score=44.91 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..-+.+.|++|+|||+++.+|.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999864
No 480
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.99 E-value=0.63 Score=43.90 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006958 37 SVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g 57 (624)
.+++.|+||+|||++..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888875
No 481
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.66 E-value=1.8 Score=37.86 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
-|.+.|++|+|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999764
No 482
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.31 E-value=0.72 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g 57 (624)
+-|.++|+|.++||||+++++|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999999875
No 483
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=81.30 E-value=0.69 Score=45.26 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
....|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999864
No 484
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=81.12 E-value=2.4 Score=48.52 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++|+|+.++||||+|+.|.|..
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 69999999999999999999864
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.82 E-value=0.5 Score=55.04 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGRD 59 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~~ 59 (624)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 486
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=80.79 E-value=4.4 Score=39.30 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=37.5
Q ss_pred CCCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceE-EEeccC
Q 006958 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF-GVLTKL 213 (624)
Q Consensus 135 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti-~VltK~ 213 (624)
..+++|||+||-.... .+....+..+|.+|+++.+.. .+........+.+...+.+.+ +|+|+.
T Consensus 128 ~yD~ViID~pp~~~~~-------------~~~~~~~~~aD~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDA-------------PLTVMQDAKPTGVVVVSTPQE--LTAVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSSH-------------HHHHHHHHCCSEEEEEECSSS--CCHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCchH-------------HHHHHhhccCCeEEEEecCcc--chHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4789999999844210 011111225787776554443 223334444454544567777 788998
Q ss_pred cc
Q 006958 214 DL 215 (624)
Q Consensus 214 D~ 215 (624)
|.
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 85
No 487
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.37 E-value=0.91 Score=42.60 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
-..|+++|++++|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999865
No 488
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.03 E-value=1.6 Score=38.12 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
-|.+.|++|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4889999999999999999865
No 489
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=79.89 E-value=0.46 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5889999999999999999986
No 490
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.68 E-value=1 Score=42.37 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.++|.|++|+|||+++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 491
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=79.62 E-value=0.89 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
..|+++|.+||||||+...|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999753
No 492
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.52 E-value=0.97 Score=45.08 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCCCeE-EEECCCCCCHHHHHHHhhCC
Q 006958 33 EALPSV-AVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 33 ~~lP~I-vvvG~~ssGKSSllnal~g~ 58 (624)
.+.|.. .+.|+||+|||++..+|...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356654 45599999999999999853
No 493
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.38 E-value=3.4 Score=47.19 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCCCe-EEEECCCCCCHHHHHHHhhCC
Q 006958 33 EALPS-VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 33 ~~lP~-IvvvG~~ssGKSSllnal~g~ 58 (624)
+..|. |.+.|+||+|||+|..++.+.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45564 999999999999999999975
No 494
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.37 E-value=0.92 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006958 36 PSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 36 P~IvvvG~~ssGKSSllnal~g~ 58 (624)
+.|+|+|.++||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 37999999999999999999864
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.93 E-value=1.9 Score=43.58 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
..+.|.+.|++|+|||++..+|...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3567999999999999999999754
No 496
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.70 E-value=1.4 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
-|.+.|++|+|||++..+|.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999875
No 497
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.36 E-value=1.2 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006958 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 35 lP~IvvvG~~ssGKSSllnal~g~ 58 (624)
...++|.|.+|+||||+++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
No 498
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=78.36 E-value=41 Score=33.64 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=20.9
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 006958 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 34 ~lP~-IvvvG~~ssGKSSllnal~g~ 58 (624)
++|. +.+.|++|+|||++..++...
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHH
Confidence 4555 899999999999999988753
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=78.30 E-value=1 Score=43.36 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006958 37 SVAVVGGQSSGKSSVLESVVGR 58 (624)
Q Consensus 37 ~IvvvG~~ssGKSSllnal~g~ 58 (624)
.|++.|..||||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 500
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=78.23 E-value=1.9 Score=42.44 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCcEEEeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceE-EEeccCc
Q 006958 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF-GVLTKLD 214 (624)
Q Consensus 136 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~~~~yi~~~~~iiL~V~~a~~d~~~~~~~~l~~~~d~~~~rti-~VltK~D 214 (624)
.+++|||+|+...... . ......+|.+|+++.+... .........+.+...+.+.+ +|+|++|
T Consensus 192 yD~VIIDtpp~~~~~d-------~-------~~l~~~aD~vilVv~~~~~--~~~~~~~~~~~l~~~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-------A-------QLFSKFTGNVVYVVNSENN--NKDEVKKGKELIEATGAKLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTCSH-------H-------HHHHHHHCEEEEEEETTSC--CHHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCchHHH-------H-------HHHHHHCCEEEEEEeCCCC--cHHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 5899999999654211 1 1122346777776554432 22333334455555577777 6789998
Q ss_pred cc
Q 006958 215 LM 216 (624)
Q Consensus 215 ~~ 216 (624)
.-
T Consensus 256 ~~ 257 (271)
T 3bfv_A 256 KD 257 (271)
T ss_dssp C-
T ss_pred CC
Confidence 53
Done!