Query 006959
Match_columns 624
No_of_seqs 324 out of 1320
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 16:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02769 Probable galacturonos 100.0 8E-163 2E-167 1337.8 51.1 601 12-623 6-629 (629)
2 PLN02910 polygalacturonate 4-a 100.0 2E-133 4E-138 1097.0 39.1 473 149-623 168-656 (657)
3 PLN02829 Probable galacturonos 100.0 1E-129 3E-134 1069.0 43.9 452 171-624 177-639 (639)
4 PLN02742 Probable galacturonos 100.0 2E-122 4E-127 1003.4 43.5 449 173-623 70-534 (534)
5 PLN02718 Probable galacturonos 100.0 2E-118 3E-123 983.2 41.8 434 172-623 160-602 (603)
6 PLN02523 galacturonosyltransfe 100.0 1E-104 2E-109 865.0 40.8 447 176-624 81-559 (559)
7 PLN02870 Probable galacturonos 100.0 6E-104 1E-108 857.0 32.2 398 219-623 103-531 (533)
8 PLN02867 Probable galacturonos 100.0 1E-103 3E-108 856.9 32.0 412 212-623 94-534 (535)
9 PLN02659 Probable galacturonos 100.0 2E-102 4E-107 845.8 33.1 395 222-623 107-532 (534)
10 cd06429 GT8_like_1 GT8_like_1 100.0 9.2E-54 2E-58 437.6 19.6 255 327-611 1-257 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 3.2E-43 6.9E-48 372.0 18.2 252 324-615 23-291 (334)
12 cd06431 GT8_LARGE_C LARGE cata 100.0 1.2E-40 2.6E-45 344.7 19.3 251 329-619 5-277 (280)
13 cd00505 Glyco_transf_8 Members 100.0 4.2E-40 9.1E-45 332.3 17.5 232 327-595 1-245 (246)
14 cd04194 GT8_A4GalT_like A4GalT 100.0 1.3E-38 2.8E-43 320.5 15.5 232 327-595 1-247 (248)
15 COG1442 RfaJ Lipopolysaccharid 100.0 2.5E-38 5.4E-43 332.6 16.9 250 326-614 2-265 (325)
16 PF01501 Glyco_transf_8: Glyco 100.0 8.4E-35 1.8E-39 286.5 10.7 238 328-597 1-249 (250)
17 cd06430 GT8_like_2 GT8_like_2 100.0 5.1E-32 1.1E-36 282.4 17.8 245 327-613 1-276 (304)
18 cd06432 GT8_HUGT1_C_like The C 100.0 4.8E-32 1E-36 276.2 13.5 220 327-590 1-240 (248)
19 cd02537 GT8_Glycogenin Glycoge 99.9 3.3E-25 7.3E-30 224.1 15.6 217 328-611 2-238 (240)
20 PLN00176 galactinol synthase 99.9 1.9E-23 4.2E-28 220.9 15.1 164 433-613 100-294 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.7 4.4E-18 9.6E-23 176.5 9.8 139 429-598 76-242 (278)
22 KOG1879 UDP-glucose:glycoprote 99.1 2.5E-10 5.5E-15 134.3 8.1 243 322-612 1177-1445(1470)
23 COG5597 Alpha-N-acetylglucosam 97.4 8.4E-05 1.8E-09 78.2 3.3 45 435-482 157-201 (368)
24 PF03407 Nucleotid_trans: Nucl 95.5 0.1 2.2E-06 51.7 10.2 144 430-590 48-202 (212)
25 PF11051 Mannosyl_trans3: Mann 88.5 0.66 1.4E-05 48.5 5.1 31 440-470 84-114 (271)
26 PLN03182 xyloglucan 6-xylosylt 84.7 3 6.6E-05 46.4 7.8 79 427-519 179-259 (429)
27 PLN02867 Probable galacturonos 81.8 4.3 9.4E-05 46.6 7.8 73 203-277 92-166 (535)
28 PF03071 GNT-I: GNT-I family; 59.4 36 0.00079 38.5 8.3 118 324-468 92-213 (434)
29 cd02514 GT13_GLCNAC-TI GT13_GL 56.9 35 0.00076 37.2 7.6 115 327-468 2-119 (334)
30 KOG1928 Alpha-1,4-N-acetylgluc 56.6 5.3 0.00011 44.2 1.2 32 433-468 228-259 (409)
31 PF04012 PspA_IM30: PspA/IM30 55.3 33 0.0007 34.6 6.6 113 168-280 21-136 (221)
32 PF05637 Glyco_transf_34: gala 55.2 8.6 0.00019 39.7 2.5 22 445-466 75-96 (239)
33 TIGR02977 phageshock_pspA phag 54.9 33 0.00071 34.9 6.6 113 168-280 22-137 (219)
34 PF10819 DUF2564: Protein of u 50.5 52 0.0011 28.8 6.0 69 207-276 6-78 (79)
35 KOG2391 Vacuolar sorting prote 45.7 63 0.0014 35.5 7.1 48 237-284 227-274 (365)
36 COG4575 ElaB Uncharacterized c 45.5 78 0.0017 29.2 6.6 75 203-279 11-86 (104)
37 PRK10132 hypothetical protein; 44.7 91 0.002 28.8 7.1 75 203-279 15-89 (108)
38 PLN02769 Probable galacturonos 44.2 6.3E+02 0.014 30.2 18.5 70 202-271 179-251 (629)
39 PF10153 DUF2361: Uncharacteri 42.6 55 0.0012 30.5 5.4 40 208-251 1-44 (114)
40 PLN03181 glycosyltransferase; 42.3 38 0.00082 38.2 5.0 34 428-462 181-214 (453)
41 PRK10698 phage shock protein P 41.4 71 0.0015 32.8 6.6 113 169-281 23-138 (222)
42 KOG1950 Glycosyl transferase, 39.8 21 0.00045 39.1 2.6 139 444-596 122-288 (369)
43 PRK10404 hypothetical protein; 38.7 1.2E+02 0.0025 27.7 6.8 78 200-279 5-83 (101)
44 PRK04989 psbM photosystem II r 35.2 41 0.00089 25.1 2.6 19 28-47 7-25 (35)
45 PF04488 Gly_transf_sug: Glyco 34.8 20 0.00044 31.7 1.3 34 429-466 62-96 (103)
46 KOG0994 Extracellular matrix g 32.0 3.2E+02 0.0069 35.0 10.6 78 203-281 1470-1560(1758)
47 COG1842 PspA Phage shock prote 29.5 1.4E+02 0.003 31.0 6.4 107 169-278 23-135 (225)
48 cd00761 Glyco_tranf_GTA_type G 29.2 3E+02 0.0065 23.4 7.8 32 340-373 13-44 (156)
49 PRK10807 paraquat-inducible pr 28.4 1.7E+02 0.0038 34.0 7.7 50 229-282 474-523 (547)
50 PF11932 DUF3450: Protein of u 27.6 55 0.0012 33.8 3.2 130 178-310 57-200 (251)
51 PF06785 UPF0242: Uncharacteri 27.2 3.4E+02 0.0074 30.0 8.9 106 179-287 108-225 (401)
52 CHL00080 psbM photosystem II p 26.4 72 0.0016 23.7 2.6 19 28-47 7-25 (34)
53 TIGR03038 PS_II_psbM photosyst 26.0 81 0.0018 23.4 2.8 15 33-47 11-25 (33)
54 cd04186 GT_2_like_c Subfamily 25.9 4.7E+02 0.01 23.2 9.3 24 446-469 74-98 (166)
55 PF03314 DUF273: Protein of un 25.6 47 0.001 34.3 2.2 24 439-462 34-57 (222)
56 PF07426 Dynactin_p22: Dynacti 25.5 2.8E+02 0.006 27.6 7.5 59 206-271 7-66 (174)
57 PF05151 PsbM: Photosystem II 24.3 77 0.0017 23.2 2.4 19 28-47 7-25 (31)
58 PRK14094 psbM photosystem II r 23.9 80 0.0017 25.2 2.7 19 28-47 7-25 (50)
59 PF10146 zf-C4H2: Zinc finger- 23.3 1.6E+02 0.0035 30.6 5.6 111 188-307 17-127 (230)
60 PF05397 Med15_fungi: Mediator 22.5 71 0.0015 29.6 2.6 51 169-220 32-82 (115)
61 KOG2189 Vacuolar H+-ATPase V0 21.0 1.1E+02 0.0024 37.0 4.3 44 178-223 237-280 (829)
62 cd04190 Chitin_synth_C C-termi 20.4 1.3E+02 0.0029 30.2 4.3 35 445-479 72-107 (244)
No 1
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=8.4e-163 Score=1337.76 Aligned_cols=601 Identities=63% Similarity=0.995 Sum_probs=534.0
Q ss_pred CccccCcccccchhhHHHHHHHHHHHHHHHHHHhcc-ccCCCCCCCCCCCCCccccccccCCchhhhhhhhhccCCCccc
Q 006959 12 AVLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGL-HNGFHSPNPNPNGYVPVHKTSIVNYRSTRINDLVKKLAPNISK 90 (624)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (624)
...++++||||||+++|||||||||||||||||||| |+||||+ +++.+|..+.|.|++.... .++.++
T Consensus 6 ~~~~~~~~~r~~~~~~~v~~lv~~s~l~pl~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~ 74 (629)
T PLN02769 6 HNLTPPGKRRWRGLVIAVLALVLCSMLVPLAFLLGLHHNGFHST-----GRVAVQPVSSPEFSHVGSA------RENGTK 74 (629)
T ss_pred CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHhccccccCCcc-----ccccccccccccccccccc------ccCCCc
Confidence 345678999999999999999999999999999999 9999998 6667888888887765322 222222
Q ss_pred cccCC-----CCCCCCcccc-----cCCcCCCCcCCCCCCCCCC------CCCCC----CCCCCCcccccccccCCCCCC
Q 006959 91 DVRSN-----FPDGAKTETS-----DMSATDTSHHSKVTPVSPP------AVPQS----LPNTSNSKIAGTVADSGRGGV 150 (624)
Q Consensus 91 ~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~ 150 (624)
++... .......++. +......+..+++.|.+++ ..+.+ ...+.++...+++..+...+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (629)
T PLN02769 75 KTQNQVSEGVDEILKESGLTSSKPSDIVISSRSKLKKVFPDPKLNPLPVKPHSVPVPSSDTKNKSTAIDKENKGQKADED 154 (629)
T ss_pred cccccccccccccccccCcccCCCcccccCCcccCCccCCCcccCCCCCCCCCCCCcccccccccccccccccccccccc
Confidence 22111 1111111111 1222222222233333222 11111 112445666788888889999
Q ss_pred CCCccceeeccceeeeeccccccchhHHHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 006959 151 DENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLP 230 (624)
Q Consensus 151 ~~~~~~~~~~g~y~~w~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~~~d~~l~ 230 (624)
|++|+|||+||||||||+||+++|+|++||+|||||||||||||+|||+++|++|+|||++||||+||+||||++|+|||
T Consensus 155 e~~~~c~~~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp 234 (629)
T PLN02769 155 ENEKSCELEFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLP 234 (629)
T ss_pred cccccceeeccceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhcCcc
Q 006959 231 PGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPS 310 (624)
Q Consensus 231 ~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~~~~ 310 (624)
+++.++|++|+++|++||+++|||++|++||||||++||||+++|+||++||+||||+|+|||||||+||||+|||++++
T Consensus 235 ~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~ 314 (629)
T PLN02769 235 PFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSS 314 (629)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCceEEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEcc
Q 006959 311 VVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIE 390 (624)
Q Consensus 311 ~~~~~~~~~~l~D~~~iHIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~ 390 (624)
+++++|++++|+||+++|||+||||+||++|||||++.|+++|++++||||||.+|+.+|++||..|++++|+|||++++
T Consensus 315 ~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e 394 (629)
T PLN02769 315 LDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIE 394 (629)
T ss_pred hhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHhhccccchhhccccCCCCCccc-ccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcc
Q 006959 391 QLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHS-KMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDI 469 (624)
Q Consensus 391 ~f~~~n~~~~~l~~l~~~~ef~~~f~~~~~p~~~~-R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~i 469 (624)
+|+|.+.+...+++++.+++|+++|++...|..+. +++|+|+++|+|||||++||+++||||||+||||++||++||++
T Consensus 395 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~i 474 (629)
T PLN02769 395 DLILKDLDKFALKQLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNL 474 (629)
T ss_pred eeeecccchHHHHhhccchhhhhhhccCCCCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcC
Confidence 99999999889999999999999888766665444 69999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccC-Ccccccccccccc
Q 006959 470 NMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-GEESKEAVALRGS 548 (624)
Q Consensus 470 DL~gkviaAVedc~~~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~-DQdlLN~gtLPp~ 548 (624)
||+|+++|||+||..+++.+.+|++..+|+++.||||+|||||||++||++++++++++|++++.. |+..|..++||++
T Consensus 475 DL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~l 554 (629)
T PLN02769 475 DMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPAS 554 (629)
T ss_pred CCCCCeEEEehhhhhhhhhhhhhhcccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHH
Confidence 999999999999987777778888888899999999999999999999999999999999988765 6888889999999
Q ss_pred cccccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChhhhhcccCC
Q 006959 549 LLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 623 (624)
Q Consensus 549 li~F~~~i~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~ 623 (624)
+++|+|++++||++||++++||++.+..+.+++|+||||+|++|||++.++++|+++||+|++++++|||+||||
T Consensus 555 nlvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~fl~~Cni~ 629 (629)
T PLN02769 555 LLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECNVN 629 (629)
T ss_pred HHHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCChHHhhCCCC
Confidence 999999999999999999999998887788899999999999999999999999999999999999999999997
No 2
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=2e-133 Score=1097.03 Aligned_cols=473 Identities=36% Similarity=0.675 Sum_probs=438.2
Q ss_pred CCCCCccce-eeccceeeeeccccccchhHHHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCC
Q 006959 149 GVDENENCE-LKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDV 227 (624)
Q Consensus 149 ~~~~~~~~~-~~~g~y~~w~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~~~d~ 227 (624)
+-|++|+|. -++|||||||+||+++|+|++||+||||||||||| |+|||+++|++|+|||++||||+||+||||++|+
T Consensus 168 ~~~~sk~~d~~~~g~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY-~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~ 246 (657)
T PLN02910 168 AIERSKSLDTSVKGKYSIWRRDYESPNSDSILKLMRDQIIMAKAY-ANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDA 246 (657)
T ss_pred HhhhhhccCcccccceeeecccccccCcHHHHHHHHHHHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHHHHhhccccc
Confidence 557899999 66999999999999999999999999999999999 6999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhc
Q 006959 228 DLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFK 307 (624)
Q Consensus 228 ~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~ 307 (624)
|||+++.++|++|+++|++||+++|||.+|++|||||++++||++++|+||++|++||||+|+|||||||+||||+|||+
T Consensus 247 dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~ 326 (657)
T PLN02910 247 ELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFL 326 (657)
T ss_pred ccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhccccccCCCCCCceEEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEE
Q 006959 308 SPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVL 387 (624)
Q Consensus 308 ~~~~~~~~~~~~~l~D~~~iHIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievi 387 (624)
+++.++++|++++|+||+++|||+|||||||+||||||++.|+++|+++|||||||.+|+.+|++||++|++++|+|||.
T Consensus 327 ~~~~~~~~p~~~~l~dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~ 406 (657)
T PLN02910 327 LGFQNKDYVNKKKLEDPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVE 406 (657)
T ss_pred CchhhccCCChhhccCCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eccccccccchh-HHHHhhccccchhhcccc----C-CC-CCc-ccc-cccchHHHHHHhhhhhhhcccCeEEEEecCee
Q 006959 388 NIEQLNLESHDK-AILIHMFLPVEYRVSLLS----V-DG-PSI-HSK-MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVV 458 (624)
Q Consensus 388 ni~~f~~~n~~~-~~l~~l~~~~ef~~~f~~----~-~~-p~~-~~R-~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvV 458 (624)
++++|+|.+.+. ++++|+....-..++|++ . .. +.+ ++| |+|+|++||+|||||++||+++||||||+|||
T Consensus 407 nie~f~wln~~~~pvl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVV 486 (657)
T PLN02910 407 NIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIV 486 (657)
T ss_pred ehhhcccccccccHHHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEE
Confidence 999999999865 577776532212222331 1 11 111 555 99999999999999999999999999999999
Q ss_pred eccCchHHHcccCCCCeeeeecccccchhhhhhhhc------cCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHH
Q 006959 459 VQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE 532 (624)
Q Consensus 459 V~~DLseLw~iDL~gkviaAVedc~~~~~~~~~yl~------~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~ 532 (624)
|++||++||++||+|+++|||+||...++++..|++ ...|+++.||||+|||||||++||++++|+.+..| .+
T Consensus 487 V~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w-~e 565 (657)
T PLN02910 487 VQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYW-QD 565 (657)
T ss_pred ecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHH-HH
Confidence 999999999999999999999999876666666654 23688899999999999999999999999977755 55
Q ss_pred ccCCcccccccccccccccccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhh
Q 006959 533 VSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQ 612 (624)
Q Consensus 533 ~~~DQdlLN~gtLPp~li~F~~~i~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~ 612 (624)
.+.+..+|.+|+|||++++|+|++++||++||++|+||++.+..+.+++|+||||+|++|||++.++++|+++|.+|+++
T Consensus 566 ln~~~~L~dqgsLPpgLLvF~g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kYl~~ 645 (657)
T PLN02910 566 LNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRYVQY 645 (657)
T ss_pred hcccccccccCCCChHHHHHhCceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchHHHHHHccC
Confidence 66778899999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ChhhhhcccCC
Q 006959 613 EDQLLSECNVH 623 (624)
Q Consensus 613 s~~fl~~cni~ 623 (624)
+++|||+|||+
T Consensus 646 d~~fl~~Cni~ 656 (657)
T PLN02910 646 DNPYLQLCNIS 656 (657)
T ss_pred CChHHHhCCCC
Confidence 99999999997
No 3
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=1.2e-129 Score=1068.98 Aligned_cols=452 Identities=40% Similarity=0.737 Sum_probs=425.2
Q ss_pred cccchhHHHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHhhcC
Q 006959 171 REEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSV 250 (624)
Q Consensus 171 ~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~ 250 (624)
+++|+|++||+|||||||||||+ +|||+++|++|+||||+||||+||+||||++|+|||+++.++|++|+++|++||++
T Consensus 177 ~~~~~d~~v~~lkDql~~AkaY~-~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~ 255 (639)
T PLN02829 177 QTVMPDARVRQLRDQLIKAKVYL-SLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQM 255 (639)
T ss_pred cccCchHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhcCcchhhccccccCCCCCCceEEE
Q 006959 251 PVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYV 330 (624)
Q Consensus 251 ~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~~~~~~~~~~~~~~l~D~~~iHIa 330 (624)
+|||.++++|||||++++||++++|+||++|++||||+|+|||||||+||||+|||+++++++++|++++|+||+++|||
T Consensus 256 ~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~ 335 (639)
T PLN02829 256 QDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHYA 335 (639)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccch-hHHHHhhcccc
Q 006959 331 IFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHD-KAILIHMFLPV 409 (624)
Q Consensus 331 ~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~-~~~l~~l~~~~ 409 (624)
+|||||||+||||||++.|+++|+++|||||||.+|+.+|++||++|++++|+|||.++++|+|.+.+ .++++|+..++
T Consensus 336 ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~~ 415 (639)
T PLN02829 336 LFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQS 415 (639)
T ss_pred EEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 56888998888
Q ss_pred chhhccccCCCC--Cc-ccc-cccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccc
Q 006959 410 EYRVSLLSVDGP--SI-HSK-MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS 485 (624)
Q Consensus 410 ef~~~f~~~~~p--~~-~~R-~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~ 485 (624)
.++++|++.... .+ ++| |+|+|.++|+|||||++||+++|||||||||||++||++||++||+|+++|||+||...
T Consensus 416 ~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~ 495 (639)
T PLN02829 416 MIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGES 495 (639)
T ss_pred hhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhh
Confidence 888888643211 11 455 99999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhhhhc------cCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccCCcccccccccccccccccCceEEe
Q 006959 486 LGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYAL 559 (624)
Q Consensus 486 ~~~~~~yl~------~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~DQdlLN~gtLPp~li~F~~~i~~L 559 (624)
++++..|++ ...|+++.||||+|||||||++||++++|++|+.|++. +.+..+|..|+|||++++|+|++++|
T Consensus 496 f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~-n~~r~L~dlgaLPp~Ll~F~g~i~~L 574 (639)
T PLN02829 496 FHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKL-NHDRQLWKLGTLPPGLITFWKRTYPL 574 (639)
T ss_pred hhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHH-ccCCccccccCCChHHHHhcCceEec
Confidence 655555543 23678899999999999999999999999999999865 44567899999999999999999999
Q ss_pred CCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChhhhhcccCCC
Q 006959 560 DGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP 624 (624)
Q Consensus 560 d~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~~ 624 (624)
|++||++|+||++.+..+++++|+||||+|++|||++.++++|+++|.+|++++++|||+|||||
T Consensus 575 D~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni~p 639 (639)
T PLN02829 575 DRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNINP 639 (639)
T ss_pred ChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCCCC
Confidence 99999999999888777889999999999999999999999999999999999999999999998
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=1.8e-122 Score=1003.39 Aligned_cols=449 Identities=37% Similarity=0.607 Sum_probs=417.6
Q ss_pred cchhHHHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCC--CchHHHHHHHHHHHHHHhhcC
Q 006959 173 EMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDL--PPGIEKKIQRMEAAITKAKSV 250 (624)
Q Consensus 173 ~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~~~d~~l--~~~~~~~~~~m~~~~~~~k~~ 250 (624)
...|++||+|||||||||||+ +|||+++|++|+|||++||||+||+||+|++|+++ |+++.++|++|+++|++||++
T Consensus 70 ~~~~~~~~~l~dql~~Ak~y~-~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~ 148 (534)
T PLN02742 70 LSATSFSRQLADQITLAKAYV-VIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDL 148 (534)
T ss_pred cChHHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhc
Confidence 357999999999999999998 99999999999999999999999999999999997 489999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhcCcchh---hccccccCCCCCCce
Q 006959 251 PVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVV---MELSQADRFSDPSLH 327 (624)
Q Consensus 251 ~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~~~~~~---~~~~~~~~l~D~~~i 327 (624)
+|||.++++|||||++++||++++|+||++|++||||+|+|||||||+||||+|||++++++ .+.|+.++|+||+++
T Consensus 149 ~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~ 228 (534)
T PLN02742 149 HYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNLY 228 (534)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999986 345677899999999
Q ss_pred EEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccch-hHHHHhhc
Q 006959 328 HYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHD-KAILIHMF 406 (624)
Q Consensus 328 HIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~-~~~l~~l~ 406 (624)
|||+|||||||++|||||++.|+++|++++||||||..|+.+|++||..+++++++++|+++++|.|.+.+ .++++|+.
T Consensus 229 Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~ 308 (534)
T PLN02742 229 HFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQ 308 (534)
T ss_pred eEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998865 46788888
Q ss_pred cccchhhccccCC--CCCc-ccc-cccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeeccc
Q 006959 407 LPVEYRVSLLSVD--GPSI-HSK-MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSC 482 (624)
Q Consensus 407 ~~~ef~~~f~~~~--~p~~-~~R-~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc 482 (624)
..+.++++|++.. .+.+ ++| |+|+|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||
T Consensus 309 ~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC 388 (534)
T PLN02742 309 DSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETC 388 (534)
T ss_pred hhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCch
Confidence 7665666676433 1112 455 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhc------cCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccCCcccccccccccccccccCce
Q 006959 483 SVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLV 556 (624)
Q Consensus 483 ~~~~~~~~~yl~------~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~DQdlLN~gtLPp~li~F~~~i 556 (624)
...++++.+|++ ..+|+++.||||+|||||||++||++++|+.++.|+ +.+.+..+|..|+|||++++|+|++
T Consensus 389 ~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~-e~n~~~~l~d~gaLpp~LLaF~g~~ 467 (534)
T PLN02742 389 LETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQ-EQNVDRTLWKLGTLPPGLLTFYGLT 467 (534)
T ss_pred hhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHH-HhccccccccccccchHHHHHcCcc
Confidence 877777777765 357889999999999999999999999999887664 5566789999999999999999999
Q ss_pred EEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChhhhhcccCC
Q 006959 557 YALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 623 (624)
Q Consensus 557 ~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~ 623 (624)
++||++||+.|+||++.++.+.+++|+||||+|++|||.+.++++|+++|++|++++++|||+||||
T Consensus 468 ~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cni~ 534 (534)
T PLN02742 468 EPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNFH 534 (534)
T ss_pred eecChhheecccccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCCCC
Confidence 9999999999999988887789999999999999999999999999999999999999999999997
No 5
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=1.5e-118 Score=983.16 Aligned_cols=434 Identities=39% Similarity=0.717 Sum_probs=399.5
Q ss_pred ccchhHHHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHhhcCC
Q 006959 172 EEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVP 251 (624)
Q Consensus 172 ~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~ 251 (624)
+.|+|++||+|||||||||||+ +|||+++|++|+|||++||||+||+||+|+.|+|||+++.++|++|+++|++||+++
T Consensus 160 ~~~~d~~v~~~~dql~~ak~y~-~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~ 238 (603)
T PLN02718 160 RRATDEKVKEIRDKIIQAKAYL-NLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVF 238 (603)
T ss_pred ccCcHHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhcCcchhhccccccCCCCCCceEEEE
Q 006959 252 VDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVI 331 (624)
Q Consensus 252 ~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~~~~~~~~~~~~~~l~D~~~iHIa~ 331 (624)
|||.+|++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||+++++++++|++++|+||+++|||+
T Consensus 239 ~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~ 318 (603)
T PLN02718 239 PNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVV 318 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhhccccch
Q 006959 332 FSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEY 411 (624)
Q Consensus 332 ~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~~l~~~~ef 411 (624)
++|||++++|+|+|++.|++++++++||||||++++++|+.||..++..+++|+|+++++|.|.+.. |
T Consensus 319 ~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~------------~ 386 (603)
T PLN02718 319 FSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPAD------------Y 386 (603)
T ss_pred EcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhcccccc------------c
Confidence 9999999999999999998888899999999999999999999988877899999999988775322 1
Q ss_pred hhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccc---hhh
Q 006959 412 RVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS---LGQ 488 (624)
Q Consensus 412 ~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~---~~~ 488 (624)
...++. .+ ..+++|+|.++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||... ++.
T Consensus 387 ~~~lk~--l~--s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~ 462 (603)
T PLN02718 387 NSLLMK--QN--SHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRS 462 (603)
T ss_pred hhhhhh--cc--ccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhh
Confidence 111111 11 12368999999999999999999999999999999999999999999999999999999752 333
Q ss_pred hhhhhc------cCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccCCcccccccccccccccccCceEEeCCc
Q 006959 489 LKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGV 562 (624)
Q Consensus 489 ~~~yl~------~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~DQdlLN~gtLPp~li~F~~~i~~Ld~~ 562 (624)
+..|++ ..+|+++.||||+|||||||++||++++|+++++|++++.. ..+|..|+|||++++|+|++++||++
T Consensus 463 ~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~-~~l~dqdaLpp~LlvF~gri~~LD~r 541 (603)
T PLN02718 463 MDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVK-RPLWKAGSLPIGWLTFYNQTVALDKR 541 (603)
T ss_pred hhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccC-ccccCcccccHHHHHhcCceeecChH
Confidence 344433 23688899999999999999999999999999999987543 46788899999999999999999999
Q ss_pred ccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChhhhhcccCC
Q 006959 563 WALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 623 (624)
Q Consensus 563 WN~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~ 623 (624)
||++++||+..+..+.+++|+||||+|++|||++.+++.|+++|.+|++++++|||+|||+
T Consensus 542 WNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~Cn~~ 602 (603)
T PLN02718 542 WHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNIH 602 (603)
T ss_pred HhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhcCCC
Confidence 9999999988777778899999999999999999999999999999999999999999997
No 6
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=1.1e-104 Score=864.99 Aligned_cols=447 Identities=33% Similarity=0.578 Sum_probs=387.2
Q ss_pred hHHHHHhhhHHHHHHhhhhhhcCCCCC-hHHHH---HHHHHHHHHHH------Hhhc--ccCC----CCCCchHHHHHHH
Q 006959 176 DTMVKKLKDQLFVARAYYPSIAKLPSQ-DKLTR---ALRQNIQEVER------VLSE--SATD----VDLPPGIEKKIQR 239 (624)
Q Consensus 176 d~~~~~~~dq~~~a~~y~~~~a~~~~~-~~~~~---el~~~~~~~~~------~l~~--~~~d----~~l~~~~~~~~~~ 239 (624)
|.+.||..|...++.||.+..+|++.. ++++| ||..|+.++.. ++++ .+.| .+||+++.+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 160 (559)
T PLN02523 81 DQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERVKV 160 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHHHHH
Confidence 889999999999999999888899865 66665 88888887652 1222 1222 3579999999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhcCcchhhc--ccc
Q 006959 240 MEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVME--LSQ 317 (624)
Q Consensus 240 m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~~~~~~~~--~~~ 317 (624)
|+++|++||+ .|||..+++|||+|++++||++++++||++|++||||+|+|||||||+||||+|||++++.+.+ .++
T Consensus 161 ~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~ 239 (559)
T PLN02523 161 ARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKPP 239 (559)
T ss_pred HHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccCCCc
Confidence 9999999998 7788899999999999999999999999999999999999999999999999999999987544 455
Q ss_pred ccCCCCCCceEEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccc
Q 006959 318 ADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESH 397 (624)
Q Consensus 318 ~~~l~D~~~iHIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~ 397 (624)
+++++||+++|||+|||||++++|||+||+.|+++|++++||||||++|+.+|++||..+++.+++|+|++|++|+|.+.
T Consensus 240 ~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~ 319 (559)
T PLN02523 240 PPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNS 319 (559)
T ss_pred chhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred hh-HHHHhhccccchhhccccC----C-CCCc-ccc-cccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcc
Q 006959 398 DK-AILIHMFLPVEYRVSLLSV----D-GPSI-HSK-MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDI 469 (624)
Q Consensus 398 ~~-~~l~~l~~~~ef~~~f~~~----~-~p~~-~~R-~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~i 469 (624)
+. +.++++...+-...+|.+. . ...+ ++| |+|+|+++|+||+||++||+++||||||+||||++||++||++
T Consensus 320 ~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~i 399 (559)
T PLN02523 320 SYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWKI 399 (559)
T ss_pred ccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHhC
Confidence 43 2334333211111223211 1 0111 334 7999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeecccccchhhhhhhhc------cCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccCCccccccc
Q 006959 470 NMGGKVNGAVQSCSVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAV 543 (624)
Q Consensus 470 DL~gkviaAVedc~~~~~~~~~yl~------~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~DQdlLN~g 543 (624)
||+|+++|||+||...+.++.++++ ...|+++.||||+|||||||++||++++|++++.| ++.+.++.+|..|
T Consensus 400 DL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w-~~ln~~~~l~Dqd 478 (559)
T PLN02523 400 DMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYW-QNLNENRTLWKLG 478 (559)
T ss_pred cCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHH-HHhcccccccccc
Confidence 9999999999999654444444433 23588999999999999999999999999999744 5666678899999
Q ss_pred ccccccccccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChhhhhcccCC
Q 006959 544 ALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 623 (624)
Q Consensus 544 tLPp~li~F~~~i~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~ 623 (624)
+|||+|++|+|++++||++||++++||++.++.+.+++|+||||+|++|||++.++++|+++|++|++++++|||+|||+
T Consensus 479 aLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~~Cn~~ 558 (559)
T PLN02523 479 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQACNFG 558 (559)
T ss_pred ccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHHhCCCC
Confidence 99999999999999999999999999988777788899999999999999999999999999999999999999999999
Q ss_pred C
Q 006959 624 P 624 (624)
Q Consensus 624 ~ 624 (624)
|
T Consensus 559 ~ 559 (559)
T PLN02523 559 L 559 (559)
T ss_pred C
Confidence 7
No 7
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=6e-104 Score=857.05 Aligned_cols=398 Identities=34% Similarity=0.602 Sum_probs=360.1
Q ss_pred HhhcccCCCCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCcccccc
Q 006959 219 VLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLS 298 (624)
Q Consensus 219 ~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~ 298 (624)
.-+|++.|+|||+++.++++ +||+.+|||.++++|||+|++++||+++++++|++|++||||+|+|||||||+
T Consensus 103 ~~~~~~~d~~lp~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~ 175 (533)
T PLN02870 103 NTEEIPDGLKLPDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAASSIPKGIHCLS 175 (533)
T ss_pred ccccccccccCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Confidence 34589999999999999887 67779999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHhcCcchhhcccccc---CCCCCCceEEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHH
Q 006959 299 MRLTVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFF 375 (624)
Q Consensus 299 mrLt~ey~~~~~~~~~~~~~~---~l~D~~~iHIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~ 375 (624)
||||+|||+++..++++|++| +|+||+++|||+|||||||+||||||++.|+++|+++|||||||.+|+.+|++||+
T Consensus 176 mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvvTD~~n~~aM~~WF~ 255 (533)
T PLN02870 176 LRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFA 255 (533)
T ss_pred hhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh
Confidence 999999999999999998877 89999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceEEEEEccccccccchh-HHHHhhccccchhhccccCCCC---------------CcccccccchHHHHHHhh
Q 006959 376 RNTFKEATVQVLNIEQLNLESHDK-AILIHMFLPVEYRVSLLSVDGP---------------SIHSKMQYISVFSHLHYL 439 (624)
Q Consensus 376 ~n~~~~a~Ievini~~f~~~n~~~-~~l~~l~~~~ef~~~f~~~~~p---------------~~~~R~~ylS~lny~Rf~ 439 (624)
+|++++|+|||.++++|+|.+.+. ++++|+....+++.+|.+...+ ....+|+|+|+++|+||+
T Consensus 256 ~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~lny~Rl~ 335 (533)
T PLN02870 256 LNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIY 335 (533)
T ss_pred hCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCccccCHHHHHHHH
Confidence 999999999999999999998764 5677776555566555422221 112249999999999999
Q ss_pred hhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccc-----hhhhhhhhc------cCCCCCCCCccccc
Q 006959 440 LPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS-----LGQLKSYLG------ENSYDKNSCAWMSG 508 (624)
Q Consensus 440 IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~-----~~~~~~yl~------~~~f~~~~~yfNSG 508 (624)
||++||+++||||||+||||++||++||++||+|+++|||+||... .+++++|++ ..+|+++.||||||
T Consensus 336 LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSG 415 (533)
T PLN02870 336 LPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYG 415 (533)
T ss_pred HHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeecc
Confidence 9999999999999999999999999999999999999999999642 234566765 45789999999999
Q ss_pred eEEEechhHhhHhHHHHHHHHHHHcc-CCcccccccccccccccccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEc
Q 006959 509 LNIVDLARWRELDLTKTYQRLVREVS-MGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHY 587 (624)
Q Consensus 509 VlLiNL~kWR~~nitek~~~~l~~~~-~DQdlLN~gtLPp~li~F~~~i~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY 587 (624)
||||||++||++++++++++|++++. .+...+..|+||++|++|+|++++||++||++++||+.....+.+++|+||||
T Consensus 416 VlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy~~~~~~~~i~~aaIIHY 495 (533)
T PLN02870 416 MNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQSKTNIESVKKAAVIHY 495 (533)
T ss_pred chhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCCcccccccccCCcEEEEE
Confidence 99999999999999999999998764 34566777788899999999999999999999999987666678899999999
Q ss_pred cCCCCCcccCCcchhHHHHHHHHhhChhhhhcccCC
Q 006959 588 NGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 623 (624)
Q Consensus 588 ~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~ 623 (624)
+|++|||++.++++|+++|.+|++++++|||+|||+
T Consensus 496 ~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 496 NGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred CCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 999999999999999999999999999999999997
No 8
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=1.5e-103 Score=856.92 Aligned_cols=412 Identities=32% Similarity=0.553 Sum_probs=364.4
Q ss_pred HHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCC
Q 006959 212 NIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMP 291 (624)
Q Consensus 212 ~~~~~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~P 291 (624)
-.+|++|+|+||+.|+++|+.+.++.+.|+++++++++.++||.++++|||||++++||+++++++|++|++||||+|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~P 173 (535)
T PLN02867 94 LREELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIP 173 (535)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccHHHhcCcchhhcccccc---CCCCCCceEEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHH
Q 006959 292 KSLHCLSMRLTVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYF 368 (624)
Q Consensus 292 K~lhcL~mrLt~ey~~~~~~~~~~~~~~---~l~D~~~iHIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~ 368 (624)
||||||+||||+|||+++++++++|+++ +|+||+++|||+|||||||+||||||++.|+++|+++|||||||.+|+.
T Consensus 174 K~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~ 253 (535)
T PLN02867 174 KSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYT 253 (535)
T ss_pred CCccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccH
Confidence 9999999999999999999999998777 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEccccccccchhHH-HHhhcc-----ccchh------hccccC-CCCCcccccccchHHHH
Q 006959 369 AMKLWFFRNTFKEATVQVLNIEQLNLESHDKAI-LIHMFL-----PVEYR------VSLLSV-DGPSIHSKMQYISVFSH 435 (624)
Q Consensus 369 am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~-l~~l~~-----~~ef~------~~f~~~-~~p~~~~R~~ylS~lny 435 (624)
+|++||++|++++|+|||.++|+|+|.+.+... ++++.. +..|+ ++|.+. ..+....+|+|+|+++|
T Consensus 254 aM~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnY 333 (535)
T PLN02867 254 PMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNH 333 (535)
T ss_pred HHHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHH
Confidence 999999999999999999999999999876433 333311 00110 112211 12222345999999999
Q ss_pred HHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccc--cc---hhhhhhhhc------cCCCCCCCCc
Q 006959 436 LHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS--VS---LGQLKSYLG------ENSYDKNSCA 504 (624)
Q Consensus 436 ~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~--~~---~~~~~~yl~------~~~f~~~~~y 504 (624)
+||+||++||+++||||||+||||++||++||++||+|+++|||.|+. .. ..++.+|++ ..+++++.||
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cY 413 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCA 413 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCcc
Confidence 999999999999999999999999999999999999999999997742 21 133566765 4568899999
Q ss_pred cccceEEEechhHhhHhHHHHHHHHHHHccC-CcccccccccccccccccCceEEeCCcccccCCCCCCCC-CHhhhcCC
Q 006959 505 WMSGLNIVDLARWRELDLTKTYQRLVREVSM-GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGL-NIEAIKKA 582 (624)
Q Consensus 505 fNSGVlLiNL~kWR~~nitek~~~~l~~~~~-DQdlLN~gtLPp~li~F~~~i~~Ld~~WN~~~lg~~~~~-~~~~i~~~ 582 (624)
||||||||||++||++++|+++++|++++.. +..++..|+||+++++|+|++++||++||+.++||+... ..+.+++|
T Consensus 414 FNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~~i~~p 493 (535)
T PLN02867 414 WLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILESA 493 (535)
T ss_pred eecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhhhcCCc
Confidence 9999999999999999999999999987643 455666777888999999999999999999999987543 33567899
Q ss_pred eEEEccCCCCCcccCCcchhHHHHHHHHhhChhhhhcccCC
Q 006959 583 AVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 623 (624)
Q Consensus 583 ~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~ 623 (624)
+||||+|++|||+++++++|+++|.+|++++++|+|+|||.
T Consensus 494 aIIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 494 AVLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred EEEEECCCCCcccccCCCchhHHHHHhcCccchHHHhcccC
Confidence 99999999999999999999999999999999999999996
No 9
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=1.7e-102 Score=845.78 Aligned_cols=395 Identities=33% Similarity=0.606 Sum_probs=352.9
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccc
Q 006959 222 ESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRL 301 (624)
Q Consensus 222 ~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrL 301 (624)
|.+.|.++|.++.+.+.+|. +.++||.+|++|||||++++||+++++++|+.++.||||+|+|||||||+|||
T Consensus 107 e~~~~~~~~~~~~~~~~~~~-------~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrL 179 (534)
T PLN02659 107 ELKGRSDIPQTLEEFMDEVK-------NSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRL 179 (534)
T ss_pred ccCCccccchHHHHHHHHHH-------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhh
Confidence 67788889988777766655 58999999999999999999999999877776666899999999999999999
Q ss_pred cHHHhcCcchhhcccccc---CCCCCCceEEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhcc
Q 006959 302 TVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNT 378 (624)
Q Consensus 302 t~ey~~~~~~~~~~~~~~---~l~D~~~iHIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~ 378 (624)
|+|||+++++++++|+++ +|+||+++|||+|||||||+||||||++.|+++|+++|||||||++|+.+|++||++|+
T Consensus 180 t~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~ 259 (534)
T PLN02659 180 ANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHP 259 (534)
T ss_pred HHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCC
Confidence 999999999999998777 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEccccccccchh-HHHHhhccccchhhccccC---------CCCCc------ccccccchHHHHHHhhhhh
Q 006959 379 FKEATVQVLNIEQLNLESHDK-AILIHMFLPVEYRVSLLSV---------DGPSI------HSKMQYISVFSHLHYLLPE 442 (624)
Q Consensus 379 ~~~a~Ievini~~f~~~n~~~-~~l~~l~~~~ef~~~f~~~---------~~p~~------~~R~~ylS~lny~Rf~IPe 442 (624)
+++|+|||.++++|+|.+.+. ++++|+....+++.+|++. +.|.. ..+|+|+|+++|+||+||+
T Consensus 260 ~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPe 339 (534)
T PLN02659 260 LSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPE 339 (534)
T ss_pred CccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHH
Confidence 999999999999999998764 5788887766666666521 23321 2349999999999999999
Q ss_pred hhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccc--h---hhhhhhhc------cCCCCCCCCccccceEE
Q 006959 443 IFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS--L---GQLKSYLG------ENSYDKNSCAWMSGLNI 511 (624)
Q Consensus 443 LlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~--~---~~~~~yl~------~~~f~~~~~yfNSGVlL 511 (624)
+||+++||||||+||||++||++||++||+|+++|||+||... + +++.+|++ ...|+++.||||+||||
T Consensus 340 LLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlL 419 (534)
T PLN02659 340 LFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNI 419 (534)
T ss_pred HhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeE
Confidence 9999999999999999999999999999999999999999632 1 34555543 23578899999999999
Q ss_pred EechhHhhHhHHHHHHHHHHHcc-CCcccccccccccccccccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCC
Q 006959 512 VDLARWRELDLTKTYQRLVREVS-MGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGN 590 (624)
Q Consensus 512 iNL~kWR~~nitek~~~~l~~~~-~DQdlLN~gtLPp~li~F~~~i~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~ 590 (624)
|||++||++++|+++++|++++. .|...|..|+|||+|++|+|++++||++||++++||+.....+.+++|+||||+|+
T Consensus 420 INLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~ 499 (534)
T PLN02659 420 FDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGR 499 (534)
T ss_pred eeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCcccccccccccCCcEEEEECCC
Confidence 99999999999999999998764 35666677888999999999999999999999999987655667899999999999
Q ss_pred CCCcccCCcchhHHHHHHHHhhChhhhhcccCC
Q 006959 591 MKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 623 (624)
Q Consensus 591 ~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~ 623 (624)
+|||+++++++|+++|.+|++++++|||+|||+
T Consensus 500 ~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 500 AKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred CCccccccCCcchhHHHHHhccCCHHHHhcCCC
Confidence 999999999999999999999999999999996
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=9.2e-54 Score=437.59 Aligned_cols=255 Identities=44% Similarity=0.762 Sum_probs=215.5
Q ss_pred eEEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchh-HHHHhh
Q 006959 327 HHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDK-AILIHM 405 (624)
Q Consensus 327 iHIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~-~~l~~l 405 (624)
+|||+++||+++++|+|.|++.||++|.+++|||+||+++.+.|++||...+..++.+++++++++.+.+... ..++++
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 6999999999999999999999999989999999999999999999999888888999999998876644321 123333
Q ss_pred ccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccc
Q 006959 406 FLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS 485 (624)
Q Consensus 406 ~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~ 485 (624)
. +.. . .......+++|+|.++|+||+||++||+++||||||||+||++||++||++||+|+++|||+|
T Consensus 81 ~-----~~~-~--~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d---- 148 (257)
T cd06429 81 E-----SEA-D--TSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET---- 148 (257)
T ss_pred h-----ccc-c--ccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh----
Confidence 2 110 0 111112347899999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccC-CcccccccccccccccccCceEEeCCccc
Q 006959 486 LGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-GEESKEAVALRGSLLTFQDLVYALDGVWA 564 (624)
Q Consensus 486 ~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~-DQdlLN~gtLPp~li~F~~~i~~Ld~~WN 564 (624)
|||||||||||++||++++++++++|+++... +...+..|++|+.+++|.|+++.||++||
T Consensus 149 ------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~~~~L~~~wN 210 (257)
T cd06429 149 ------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDPSWH 210 (257)
T ss_pred ------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCeeEECChHHc
Confidence 79999999999999999999999999976543 22344455566666899999999999999
Q ss_pred ccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHh
Q 006959 565 LSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLN 611 (624)
Q Consensus 565 ~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~ 611 (624)
++++|++.....+.+++|+||||+|+.|||+..+.++|+++||+|++
T Consensus 211 ~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 211 VRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred ccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 99888876544456779999999999999999988999999999974
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.2e-43 Score=372.01 Aligned_cols=252 Identities=17% Similarity=0.250 Sum_probs=190.2
Q ss_pred CCceEEEE-EeCCCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHH-hccCCCceEEEEEccccccccchhH
Q 006959 324 PSLHHYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFF-RNTFKEATVQVLNIEQLNLESHDKA 400 (624)
Q Consensus 324 ~~~iHIa~-~sDNvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~-~n~~~~a~Ievini~~f~~~n~~~~ 400 (624)
+..+|||+ +|+|++. ++|+|+|++.|+++ ..++|||++++++.+.++..-. ...+ +..+.++.++.-.
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~-~~~i~~~~id~~~------- 93 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQY-NTRINIYLINCER------- 93 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEeCHHH-------
Confidence 47899999 6777775 78999999999875 4799999999999988776422 2333 3455555442100
Q ss_pred HHHhhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhc-ccCeEEEEecCeeeccCchHHHcccCCCCeeeee
Q 006959 401 ILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAV 479 (624)
Q Consensus 401 ~l~~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP-~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAV 479 (624)
+ . ..|. ..++|..+|+||+||++|| +++||||||+|+||++||++||++||++..+|||
T Consensus 94 -~-------------~--~~~~----~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav 153 (334)
T PRK15171 94 -L-------------K--SLPS----TKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAV 153 (334)
T ss_pred -H-------------h--CCcc----cCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEE
Confidence 0 0 1122 2578999999999999998 6999999999999999999999999996666666
Q ss_pred -cccccchhhhhhhhccCCCCC-CCCccccceEEEechhHhhHhHHHHHHHHHHHcc-------CCcccccccccccccc
Q 006959 480 -QSCSVSLGQLKSYLGENSYDK-NSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-------MGEESKEAVALRGSLL 550 (624)
Q Consensus 480 -edc~~~~~~~~~yl~~~~f~~-~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~-------~DQdlLN~gtLPp~li 550 (624)
.|+...+ +.+.....+... ...|||||||||||++||++++++++++++.+.. .|||+|| +
T Consensus 154 ~~d~~~~~--~~~~~~~l~~~~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN--------~ 223 (334)
T PRK15171 154 VAEGDAEW--WSKRAQSLQTPGLASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLN--------I 223 (334)
T ss_pred EeccchhH--HHHHHHhcCCccccccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHH--------H
Confidence 5543211 112111222211 2469999999999999999999999999987531 2999999 6
Q ss_pred cccCceEEeCCcccccCCCCCCCC----CHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChh
Q 006959 551 TFQDLVYALDGVWALSGLGHDYGL----NIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQ 615 (624)
Q Consensus 551 ~F~~~i~~Ld~~WN~~~lg~~~~~----~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~ 615 (624)
+|.|+++.||.+||++. +..... ......+|+||||+|+.|||+..+.++++++||+|+..++.
T Consensus 224 ~~~~~~~~L~~~wN~~~-~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~~spw 291 (334)
T PRK15171 224 LLAGKVKFIDAKYNTQF-SLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKEASPW 291 (334)
T ss_pred HHcCCeEECCHhhCCcc-chhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHhcCCC
Confidence 89999999999999873 221111 11224579999999999999988889999999999999754
No 12
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=1.2e-40 Score=344.74 Aligned_cols=251 Identities=20% Similarity=0.299 Sum_probs=184.4
Q ss_pred EEEEeCCCc-ccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhhcc
Q 006959 329 YVIFSTNVL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFL 407 (624)
Q Consensus 329 Ia~~sDNvL-aasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~~l~~ 407 (624)
||++.+||. .++|+|+|++.|+. ..++|||++|+++.+..+.+.......++.+.+++++++. +.
T Consensus 5 iv~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~---------~~--- 70 (280)
T cd06431 5 IVCAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK---------SR--- 70 (280)
T ss_pred EEEccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh---------hh---
Confidence 344457865 57899999999985 4699999999999998887654333346778887764321 00
Q ss_pred ccchhhccccCCCCCcccccccchH-HHHHHhhhhhhhc-ccCeEEEEecCeeeccCchHHHcc--cCCCC-eeeeeccc
Q 006959 408 PVEYRVSLLSVDGPSIHSKMQYISV-FSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDI--NMGGK-VNGAVQSC 482 (624)
Q Consensus 408 ~~ef~~~f~~~~~p~~~~R~~ylS~-lny~Rf~IPeLlP-~ldKVLYLD~DvVV~~DLseLw~i--DL~gk-viaAVedc 482 (624)
+. ..| ..++|. .+|+||+||++|| +++||||||+|+||++||++||++ |+.|. ++|||+|.
T Consensus 71 -------~~--~~~-----~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~ 136 (280)
T cd06431 71 -------VS--WIP-----NKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQ 136 (280)
T ss_pred -------hc--cCc-----ccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccc
Confidence 00 011 124454 4889999999999 799999999999999999999998 67554 66777764
Q ss_pred ccchhhhhhhhc--cCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHc----c----CCcccccccccccccccc
Q 006959 483 SVSLGQLKSYLG--ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREV----S----MGEESKEAVALRGSLLTF 552 (624)
Q Consensus 483 ~~~~~~~~~yl~--~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~----~----~DQdlLN~gtLPp~li~F 552 (624)
.. .+..... ...+.....|||||||||||++||++++++++..+.++. . .|||+|| ++|
T Consensus 137 ~~---~~~~~~~~~~~~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN--------~v~ 205 (280)
T cd06431 137 SD---WYLGNLWKNHRPWPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFN--------AVI 205 (280)
T ss_pred hh---hhhhhhhhccCCCcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHH--------HHH
Confidence 32 1111110 011112235999999999999999999999988666542 1 3999999 689
Q ss_pred cCc---eEEeCCcccccCCCCCCCCCH--hhhcCCeEEEccCCCCCcccCCc-chhHHHHHHHHhhChhhhhc
Q 006959 553 QDL---VYALDGVWALSGLGHDYGLNI--EAIKKAAVLHYNGNMKPWLELGI-PRYKKFWKKFLNQEDQLLSE 619 (624)
Q Consensus 553 ~~~---i~~Ld~~WN~~~lg~~~~~~~--~~i~~~~IIHY~G~~KPW~~~~~-~~y~~lW~kYl~~s~~fl~~ 619 (624)
.++ ++.||.+||++. +....... ...++|+||||+|+.|||...+. ++|+++|.+|++++..-||+
T Consensus 206 ~~~~~~~~~L~~~wN~~~-~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (280)
T cd06431 206 KQNPFLVYQLPCAWNVQL-SDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRR 277 (280)
T ss_pred cCCcceeEECCCcccccc-CccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhh
Confidence 999 899999999984 22211111 12468999999999999998775 99999999999999988875
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=4.2e-40 Score=332.27 Aligned_cols=232 Identities=22% Similarity=0.277 Sum_probs=178.0
Q ss_pred eEEEE-EeC-CCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHH
Q 006959 327 HHYVI-FST-NVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 403 (624)
Q Consensus 327 iHIa~-~sD-NvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~ 403 (624)
|||++ ++| |++. ++|+|+|+++|+++ .++|||++++++.+..+.+-......+..+++++++...+..
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~------- 71 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD------- 71 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch-------
Confidence 68888 666 6765 68999999999876 799999999999888776533222235678888764211100
Q ss_pred hhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccc
Q 006959 404 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 483 (624)
Q Consensus 404 ~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~ 483 (624)
.+.. .++++..+|+||+||++||+++||||||+|+||++||++||++|++|+.+|||+||.
T Consensus 72 ----------------~~~~---~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~ 132 (246)
T cd00505 72 ----------------SEHL---KRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPG 132 (246)
T ss_pred ----------------hhhh---cCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCch
Confidence 0000 156788999999999999999999999999999999999999999999999999987
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc-----CCcccccccccccccccccCc---
Q 006959 484 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-----MGEESKEAVALRGSLLTFQDL--- 555 (624)
Q Consensus 484 ~~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~-----~DQdlLN~gtLPp~li~F~~~--- 555 (624)
.... ...+-...+.....+|||||||||||++||++++.++..+++.+.. .|||++| .+|.++
T Consensus 133 ~~~~-~~~~~~~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN--------~~~~~~~~~ 203 (246)
T cd00505 133 DRRE-GKYYRQKRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLN--------TFFKQVPFI 203 (246)
T ss_pred hhhc-cchhhcccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHH--------HHHhcCCCe
Confidence 4211 0111112334456789999999999999998888888877665432 3999999 588998
Q ss_pred eEEeCCcccccCCCCCCCC--CHhhhcCCeEEEccCCCCCcc
Q 006959 556 VYALDGVWALSGLGHDYGL--NIEAIKKAAVLHYNGNMKPWL 595 (624)
Q Consensus 556 i~~Ld~~WN~~~lg~~~~~--~~~~i~~~~IIHY~G~~KPW~ 595 (624)
+..||.+||++..++.... ..+..++|+||||+|+.|||.
T Consensus 204 i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 204 VKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred EEECCCeeeEEecCccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 9999999999865543221 234678999999999999996
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=1.3e-38 Score=320.45 Aligned_cols=232 Identities=22% Similarity=0.301 Sum_probs=179.5
Q ss_pred eEEEE-EeCCCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHh
Q 006959 327 HHYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIH 404 (624)
Q Consensus 327 iHIa~-~sDNvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~~ 404 (624)
+|||+ +|++++. ++|+++|+++|+++ +.++|||++++++.+.++..-..-.-.+..++++.++.-. ..
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~--------~~- 70 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDD--------FK- 70 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHH--------Hh-
Confidence 68999 5666775 67999999999986 5799999999998877765322111134567777653210 00
Q ss_pred hccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeeccccc
Q 006959 405 MFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV 484 (624)
Q Consensus 405 l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~ 484 (624)
..+. ..++++..+|+||++|+++|+++||||||+|+||++||++||++|++|+.+|||.||..
T Consensus 71 --------------~~~~---~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~ 133 (248)
T cd04194 71 --------------FFPA---TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFI 133 (248)
T ss_pred --------------cCCc---ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccH
Confidence 1110 13567899999999999999999999999999999999999999999999999999975
Q ss_pred chhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc-----CCcccccccccccccccccCceEEe
Q 006959 485 SLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-----MGEESKEAVALRGSLLTFQDLVYAL 559 (624)
Q Consensus 485 ~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~-----~DQdlLN~gtLPp~li~F~~~i~~L 559 (624)
....... ...+.....+||||||||+|+++||+.++++++++++++.. .||+++| .+|.+++..|
T Consensus 134 ~~~~~~~--~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN--------~~~~~~~~~L 203 (248)
T cd04194 134 EQEKKRK--RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGRLIYPDQDILN--------AVLKDKILYL 203 (248)
T ss_pred HHHHHHH--hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCceeeCChHHHH--------HHHhCCeEEc
Confidence 3211111 12234456789999999999999999999999999998754 3999998 6899999999
Q ss_pred CCcccccCCCCCCCC--------CHhhhcCCeEEEccCCCCCcc
Q 006959 560 DGVWALSGLGHDYGL--------NIEAIKKAAVLHYNGNMKPWL 595 (624)
Q Consensus 560 d~~WN~~~lg~~~~~--------~~~~i~~~~IIHY~G~~KPW~ 595 (624)
|.+||++...+.... .....++++||||+|..|||.
T Consensus 204 ~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~ 247 (248)
T cd04194 204 PPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWN 247 (248)
T ss_pred CcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 999999854332111 124578999999999999997
No 15
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-38 Score=332.60 Aligned_cols=250 Identities=23% Similarity=0.291 Sum_probs=193.9
Q ss_pred ceEEEE-EeCCCc-ccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHH-HhccCC-CceEEEEEccccccccchhHH
Q 006959 326 LHHYVI-FSTNVL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWF-FRNTFK-EATVQVLNIEQLNLESHDKAI 401 (624)
Q Consensus 326 ~iHIa~-~sDNvL-aasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF-~~n~~~-~a~Ievini~~f~~~n~~~~~ 401 (624)
.++||+ +|+||+ +++|+|.|++.|++. -.+.|||++|+++.+.++..- ...+++ .+.+++++++.++
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~-------- 72 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFL-------- 72 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhh--------
Confidence 478999 666766 688999999999986 379999999999999988753 345665 5667777765432
Q ss_pred HHhhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecc
Q 006959 402 LIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 481 (624)
Q Consensus 402 l~~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVed 481 (624)
..|. ..+++|.++|+||+||++||+++|+||||+||||++||++||.+|++++++|||.|
T Consensus 73 -----------------~~~~---~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D 132 (325)
T COG1442 73 -----------------DYPP---FTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRD 132 (325)
T ss_pred -----------------cccc---cccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEee
Confidence 1120 03678899999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhc-cCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccC-----CcccccccccccccccccCc
Q 006959 482 CSVSLGQLKSYLG-ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-----GEESKEAVALRGSLLTFQDL 555 (624)
Q Consensus 482 c~~~~~~~~~yl~-~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~-----DQdlLN~gtLPp~li~F~~~ 555 (624)
+..... .+... .........|||+|||++|++.||++++++++++++.+..+ |||++| ++|+++
T Consensus 133 ~~~~~~--~~~~~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~~~~~DQdiLN--------~i~~~~ 202 (325)
T COG1442 133 VFSHYM--KEGALRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKENDLLYPDQDILN--------MIFEDR 202 (325)
T ss_pred hhhhhh--hhhhhHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccccCCccccHHH--------HHHHhh
Confidence 874211 11011 11112345699999999999999999999999999865432 999998 799999
Q ss_pred eEEeCCcccccCCCCCCCCC---HhhhcCCeEEEccCCCCCcccCCcchh-HHHHHHHHhhCh
Q 006959 556 VYALDGVWALSGLGHDYGLN---IEAIKKAAVLHYNGNMKPWLELGIPRY-KKFWKKFLNQED 614 (624)
Q Consensus 556 i~~Ld~~WN~~~lg~~~~~~---~~~i~~~~IIHY~G~~KPW~~~~~~~y-~~lW~kYl~~s~ 614 (624)
+.+|+.+||++...-..... .....+|.|+||+|+.|||+..+.+.+ ..+|...+..++
T Consensus 203 ~~~L~~~YN~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~w~~i~~~~p 265 (325)
T COG1442 203 VLELPIRYNAIPYIDSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPRSHEWHEILAETP 265 (325)
T ss_pred hhccCcccceeehhhhccchhhhccCCCCceEEEecCCCCCCcCccccccHHHHHHHHHhcCC
Confidence 99999999998432110111 244568999999999999999876655 477777766554
No 16
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=100.00 E-value=8.4e-35 Score=286.54 Aligned_cols=238 Identities=18% Similarity=0.280 Sum_probs=160.3
Q ss_pred EEEE-EeCCCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhc-cCCCceEEEEEccccccccchhHHHHh
Q 006959 328 HYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRN-TFKEATVQVLNIEQLNLESHDKAILIH 404 (624)
Q Consensus 328 HIa~-~sDNvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n-~~~~a~Ievini~~f~~~n~~~~~l~~ 404 (624)
||++ +++||+. ++|+|+|++.|++++..++|||++++++.+..+...... .+. .+..+...+.. .+..
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~-------~~~~ 71 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVI--EIEPIEFPDIS-------MLEE 71 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCC--TTECEEETSGG-------HHH-
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhccccc--ceeeeccchHH-------hhhh
Confidence 7899 5666764 689999999999987789999999999988877642211 111 11111111000 0000
Q ss_pred hccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeeccccc
Q 006959 405 MFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV 484 (624)
Q Consensus 405 l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~ 484 (624)
. +.......+++..+|+||+++++|++++||||||+|+||.+||++||+++++|+.+||++|+..
T Consensus 72 ~---------------~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~ 136 (250)
T PF01501_consen 72 F---------------QFNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESF 136 (250)
T ss_dssp ----------------TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----
T ss_pred h---------------hhcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchh
Confidence 0 0001113678899999999999999999999999999999999999999999999999999432
Q ss_pred chhhhhh-hhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccC-----CcccccccccccccccccCceEE
Q 006959 485 SLGQLKS-YLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-----GEESKEAVALRGSLLTFQDLVYA 558 (624)
Q Consensus 485 ~~~~~~~-yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~-----DQdlLN~gtLPp~li~F~~~i~~ 558 (624)
....... ...........+|||+||||+|+++||++++.+++.++++.... ||+++| ++|.+++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln--------~~~~~~~~~ 208 (250)
T PF01501_consen 137 DNFPNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILN--------IVFYGNIKP 208 (250)
T ss_dssp HHHHTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHH--------HHHTTGEEE
T ss_pred hhhhhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHh--------hhccceeEE
Confidence 1000001 11111223457899999999999999999999999999876532 999998 689999999
Q ss_pred eCCcccccCCCCCCC--CCHhhhcCCeEEEccCCCCCcccC
Q 006959 559 LDGVWALSGLGHDYG--LNIEAIKKAAVLHYNGNMKPWLEL 597 (624)
Q Consensus 559 Ld~~WN~~~lg~~~~--~~~~~i~~~~IIHY~G~~KPW~~~ 597 (624)
||.+||++..++... ......++++||||+|..|||...
T Consensus 209 L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 209 LPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp EEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred ECchhccccccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 999999985443111 112456899999999999999864
No 17
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.98 E-value=5.1e-32 Score=282.42 Aligned_cols=245 Identities=12% Similarity=0.243 Sum_probs=166.6
Q ss_pred eEEEE-E-eCCCcccccchhhcccccCCCCCeEEEEEeCCC-CHHHH---HHHHHhccCCCceEEEEEccccccccchhH
Q 006959 327 HHYVI-F-STNVLASSVVINSTVLCARESKNQVFHVLTDGQ-NYFAM---KLWFFRNTFKEATVQVLNIEQLNLESHDKA 400 (624)
Q Consensus 327 iHIa~-~-sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~i-n~~am---~~wF~~n~~~~a~Ievini~~f~~~n~~~~ 400 (624)
+|+|+ + .|+.-.+-|+|+|++.|+. ..++|||++|+. ..+.. +.|-.... ......+..+ .
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~-~~i~~~i~~I---~------- 67 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPELID-RKFNYTLHPI---T------- 67 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHHhcc-ceeeeEEEEE---e-------
Confidence 57777 4 4443346789999999984 579999999984 43332 33411110 1111122222 1
Q ss_pred HHHhhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcc--cCCCCe-ee
Q 006959 401 ILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDI--NMGGKV-NG 477 (624)
Q Consensus 401 ~l~~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~i--DL~gkv-ia 477 (624)
+|.+- .. .+ +..++..+|+||++|++||++|||||||+|+||.+||++||++ |+++.. +|
T Consensus 68 ------~P~~~---~~--~w------s~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA 130 (304)
T cd06430 68 ------FPSGN---AA--EW------KKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAA 130 (304)
T ss_pred ------cCccc---hh--hh------hhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEE
Confidence 11100 00 00 1345568999999999999999999999999999999999999 999864 45
Q ss_pred eeccccc-chhhhhhhhccCCCCCCCCccccceEEEechhHhh-----------HhHHHHHHHHHHHcc-----CCcccc
Q 006959 478 AVQSCSV-SLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRE-----------LDLTKTYQRLVREVS-----MGEESK 540 (624)
Q Consensus 478 AVedc~~-~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~-----------~nitek~~~~l~~~~-----~DQdlL 540 (624)
++++... ..+.+.++. ...+ ....|||||||||||++||+ .+++++++++++++. .|||++
T Consensus 131 ~v~e~~~~~~~~~~~~~-~~~~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDiL 208 (304)
T cd06430 131 MAPEHEEPNIGWYNRFA-RHPY-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDLI 208 (304)
T ss_pred EEecccccchhhhhhhc-ccCc-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHHH
Confidence 5555321 111222211 1122 12347999999999999999 788999999998764 299999
Q ss_pred cccccccccccccCc---eEEeCCcccccCCC--CCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhC
Q 006959 541 EAVALRGSLLTFQDL---VYALDGVWALSGLG--HDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQE 613 (624)
Q Consensus 541 N~gtLPp~li~F~~~---i~~Ld~~WN~~~lg--~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s 613 (624)
| ++|+++ ++.||.+||++..- |.........+.++|||++++.| +....+.|+.+|.-..+++
T Consensus 209 N--------~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~--~~~~~~~f~~~~~~~~~~~ 276 (304)
T cd06430 209 N--------IIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY--HSDKQPAFRAVYEAIREYT 276 (304)
T ss_pred H--------HHHcCCCCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC--CCccchHHHHHHHHHHhcc
Confidence 9 688887 99999999987522 22222223456899999998766 4555788999998888876
No 18
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.97 E-value=4.8e-32 Score=276.18 Aligned_cols=220 Identities=15% Similarity=0.207 Sum_probs=157.9
Q ss_pred eEEEE-EeCC-Cc-ccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHH-hccCCCceEEEEEccccccccchhHHH
Q 006959 327 HHYVI-FSTN-VL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFF-RNTFKEATVQVLNIEQLNLESHDKAIL 402 (624)
Q Consensus 327 iHIa~-~sDN-vL-aasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~-~n~~~~a~Ievini~~f~~~n~~~~~l 402 (624)
+||.. .+|+ |. +++|+|.|++.|+. ..++|||++++++.+..+..-. ...+ ++.++++.++.-.|.
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~-~~~i~~i~i~~~~~~------- 70 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEY-GFEYELVTYKWPRWL------- 70 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHh-CCceEEEEecChhhh-------
Confidence 46766 4544 54 57899999999985 5799999999999887665322 2233 467777766311110
Q ss_pred HhhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhc-ccCeEEEEecCeeeccCchHHHcccCCCCeeeeecc
Q 006959 403 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 481 (624)
Q Consensus 403 ~~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP-~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVed 481 (624)
+ ..+. ..+ ...+|.|++++++|| +++||||||+|+||.+||++||++||+|+++|||+|
T Consensus 71 -------------~--~~~~----~~~-~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d 130 (248)
T cd06432 71 -------------H--KQTE----KQR-IIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPF 130 (248)
T ss_pred -------------h--cccc----cch-hHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeec
Confidence 0 0111 011 256789999999999 699999999999999999999999999999999999
Q ss_pred cccchh----hh--hhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHH---cc-----CCccccccccccc
Q 006959 482 CSVSLG----QL--KSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE---VS-----MGEESKEAVALRG 547 (624)
Q Consensus 482 c~~~~~----~~--~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~---~~-----~DQdlLN~gtLPp 547 (624)
|..... .+ ..|. ..++ ....|||||||||||++||++++++++.++++. .. .|||++|
T Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN------ 202 (248)
T cd06432 131 CDSRKEMDGFRFWKQGYW-KSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPN------ 202 (248)
T ss_pred cccchhcccchhhhhhhh-hhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhH------
Confidence 864210 00 1110 1122 234699999999999999999999977766653 21 2999999
Q ss_pred ccccccCc-eEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCC
Q 006959 548 SLLTFQDL-VYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGN 590 (624)
Q Consensus 548 ~li~F~~~-i~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~ 590 (624)
.++.+. ++.||.+||++. ++. ..+..+.|.+|||..+
T Consensus 203 --~v~~~~~i~~Lp~~w~~~~-~~~---~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 203 --NMQHQVPIFSLPQEWLWCE-TWC---SDESKKKAKTIDLCNN 240 (248)
T ss_pred --HHhccCCeEECChHHHHHH-HHh---cccccCccceeecccC
Confidence 477775 999999999873 221 2234678999999764
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.93 E-value=3.3e-25 Score=224.08 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=150.4
Q ss_pred EEEE-E-eCCCcc-cccchhhcccccCCCCCeEEEEE-eCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHH
Q 006959 328 HYVI-F-STNVLA-SSVVINSTVLCARESKNQVFHVL-TDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 403 (624)
Q Consensus 328 HIa~-~-sDNvLa-asVvI~Sil~N~~~p~~ivFHIl-tD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~ 403 (624)
++|. + +|||+. +.|++.|+.+|+++ +.+||+ +++++.+..+..-. . ..+++.++.++.....
T Consensus 2 ay~t~~~~~~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~---~---~~~~~~v~~i~~~~~~----- 67 (240)
T cd02537 2 AYVTLLTNDDYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEE---V---GWIVREVEPIDPPDSA----- 67 (240)
T ss_pred EEEEEecChhHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHH---c---CCEEEecCccCCcchh-----
Confidence 3555 3 457765 67999999999873 455555 45688877665321 1 1344444332210000
Q ss_pred hhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccc
Q 006959 404 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 483 (624)
Q Consensus 404 ~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~ 483 (624)
..+ ..+.+..+|.||+++++. +++||||||+|+||.+||++||++ +..++|+.|+.
T Consensus 68 ---------------~~~-----~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~ 123 (240)
T cd02537 68 ---------------NLL-----KRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG 123 (240)
T ss_pred ---------------hhc-----cchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC
Confidence 000 123456789999999975 699999999999999999999987 67788888763
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc----CCcccccccccccccccccCc--eE
Q 006959 484 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS----MGEESKEAVALRGSLLTFQDL--VY 557 (624)
Q Consensus 484 ~~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~----~DQdlLN~gtLPp~li~F~~~--i~ 557 (624)
. ..|||||||+||+.. ++.+++++++.+.. .||++|| .+|+++ +.
T Consensus 124 ~-----------------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~~~~~DQdiLN--------~~~~~~~~~~ 174 (240)
T cd02537 124 W-----------------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPSFDGGDQGLLN--------SYFSDRGIWK 174 (240)
T ss_pred c-----------------cccccceEEEEcCCH----HHHHHHHHHHhccCCCCCCCHHHHH--------HHHcCCCCEe
Confidence 1 249999999999964 55666677766532 3999999 689999 99
Q ss_pred EeCCcccccCCCCCCCCC-HhhhcCCeEEEccCCCCCcccCCc---------chhHHHHHHHHh
Q 006959 558 ALDGVWALSGLGHDYGLN-IEAIKKAAVLHYNGNMKPWLELGI---------PRYKKFWKKFLN 611 (624)
Q Consensus 558 ~Ld~~WN~~~lg~~~~~~-~~~i~~~~IIHY~G~~KPW~~~~~---------~~y~~lW~kYl~ 611 (624)
.||.+||++...+..... ....++++||||+|..|||...+. ......||+.+.
T Consensus 175 ~l~~~yN~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~w~~~~~ 238 (240)
T cd02537 175 RLPFTYNALKPLRYLHPEALWFGDEIKVVHFIGGDKPWSWWRDPETKEKDDYNELHQWWWDIYD 238 (240)
T ss_pred ECCcceeeehhhhccCchhhcccCCcEEEEEeCCCCCCCCCcCCCcccccchHHHHHHHHHHHh
Confidence 999999997432221111 123568999999999999986543 345677887764
No 20
>PLN00176 galactinol synthase
Probab=99.90 E-value=1.9e-23 Score=220.86 Aligned_cols=164 Identities=20% Similarity=0.267 Sum_probs=117.6
Q ss_pred HHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccchh--hhhhh-----------h---ccC
Q 006959 433 FSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLG--QLKSY-----------L---GEN 496 (624)
Q Consensus 433 lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~~~--~~~~y-----------l---~~~ 496 (624)
.+|.||.++++. +++||||||+|+||.++|++||+++ +..+|||.||.+... ....| + ...
T Consensus 100 i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~ 176 (333)
T PLN00176 100 INYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAEL 176 (333)
T ss_pred hhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEecccccccccccccccccccccchhhccchhhc
Confidence 467899999876 5899999999999999999999884 346899999975311 10011 0 011
Q ss_pred CCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc----CCcccccccccccccccccCceEEeCCcccccC-CCCC
Q 006959 497 SYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS----MGEESKEAVALRGSLLTFQDLVYALDGVWALSG-LGHD 571 (624)
Q Consensus 497 ~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~----~DQdlLN~gtLPp~li~F~~~i~~Ld~~WN~~~-lg~~ 571 (624)
+. +...||||||||||++.|+.+++.+ +++... .|||+|| .+|.+++.+||.+||++. .-+.
T Consensus 177 g~-~~~~yFNSGVlvinps~~~~~~ll~----~l~~~~~~~f~DQD~LN--------~~F~~~~~~Lp~~YN~~~~~~~~ 243 (333)
T PLN00176 177 GP-PPPLYFNAGMFVFEPSLSTYEDLLE----TLKITPPTPFAEQDFLN--------MFFRDIYKPIPPVYNLVLAMLWR 243 (333)
T ss_pred cC-CCCCeEEeEEEEEEcCHHHHHHHHH----HHHhcCCCCCCCHHHHH--------HHHcCcEEECCchhcCchhhhhh
Confidence 11 2357999999999999999877765 443321 3999999 699999999999999873 1111
Q ss_pred CCCCHhhhcCCeEEEccC-CCCCcccCCc---------chhHHHHHHHHhhC
Q 006959 572 YGLNIEAIKKAAVLHYNG-NMKPWLELGI---------PRYKKFWKKFLNQE 613 (624)
Q Consensus 572 ~~~~~~~i~~~~IIHY~G-~~KPW~~~~~---------~~y~~lW~kYl~~s 613 (624)
.. ..-..++++||||+| ..|||+..+. ..+.+.||..++.+
T Consensus 244 ~~-~~~~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~ 294 (333)
T PLN00176 244 HP-ENVELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDE 294 (333)
T ss_pred Ch-hhcccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhccc
Confidence 11 111246899999997 5799986542 23457899887753
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.74 E-value=4.4e-18 Score=176.49 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=107.9
Q ss_pred cchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccc
Q 006959 429 YISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSG 508 (624)
Q Consensus 429 ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~~~~~~~yl~~~~f~~~~~yfNSG 508 (624)
.++. +|.||.++++ ++++||||||+|+||.++|++||+++... .+||+. .. .|||||
T Consensus 76 ~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~~-~~Aap~-~~-------------------~~FNSG 132 (278)
T cd06914 76 YWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNYI-KFAAPR-AY-------------------WKFASH 132 (278)
T ss_pred cHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCccc-ceeeec-Cc-------------------ceecce
Confidence 3443 5999999999 68999999999999999999999988333 345533 11 199999
Q ss_pred eEEEechhHhhHhHHHHHHHHHHHc--cCCcccccccccccccccccCc-------eEEeCCc-ccccCCCCCCC-----
Q 006959 509 LNIVDLARWRELDLTKTYQRLVREV--SMGEESKEAVALRGSLLTFQDL-------VYALDGV-WALSGLGHDYG----- 573 (624)
Q Consensus 509 VlLiNL~kWR~~nitek~~~~l~~~--~~DQdlLN~gtLPp~li~F~~~-------i~~Ld~~-WN~~~lg~~~~----- 573 (624)
|||||++.|+.+++++++.++.... ..||++|| .+|.|. +..||.+ ||++..-+...
T Consensus 133 vmvi~ps~~~~~~l~~~~~~~~~~~~~~~DQdiLN--------~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~~~~ 204 (278)
T cd06914 133 LMVIKPSKEAFKELMTEILPAYLNKKNEYDMDLIN--------EEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLHKSF 204 (278)
T ss_pred eEEEeCCHHHHHHHHHHHHHhcccCCCCCChHHHH--------HHHhCCccccCcceEEcCccccccCChhhcccCHHHh
Confidence 9999999999999999999886543 23999999 688899 9999997 99875222111
Q ss_pred ----------CC-HhhhcCCeEEEccCC--CCCcccCC
Q 006959 574 ----------LN-IEAIKKAAVLHYNGN--MKPWLELG 598 (624)
Q Consensus 574 ----------~~-~~~i~~~~IIHY~G~--~KPW~~~~ 598 (624)
.+ .+..+++++|||++. .|||....
T Consensus 205 l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~ 242 (278)
T cd06914 205 LSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNN 242 (278)
T ss_pred hccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcC
Confidence 01 234578999999986 69998753
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2.5e-10 Score=134.34 Aligned_cols=243 Identities=18% Similarity=0.226 Sum_probs=164.7
Q ss_pred CCCCceEEEE-EeCC-Ccc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccch
Q 006959 322 SDPSLHHYVI-FSTN-VLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHD 398 (624)
Q Consensus 322 ~D~~~iHIa~-~sDN-vLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~ 398 (624)
.|.+.|||.- +|-. |=. .-+++.|+++|++.| +.|.++-+-++..-....=.++..-+...+++. |+|-.
T Consensus 1177 ~~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~---YkWPr-- 1249 (1470)
T KOG1879|consen 1177 KDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQ---YKWPR-- 1249 (1470)
T ss_pred CccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHhCceEEEEE---ecCch--
Confidence 3556899888 5554 322 346888999999976 999999998765433321111111133455554 34411
Q ss_pred hHHHHhhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhc-ccCeEEEEecCeeeccCchHHHcccCCCCeee
Q 006959 399 KAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNG 477 (624)
Q Consensus 399 ~~~l~~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP-~ldKVLYLD~DvVV~~DLseLw~iDL~gkvia 477 (624)
=|.+ ...+.| -+..|=-|||.=||| +++||||.|+|-||..||.||.++||+|.+.|
T Consensus 1250 --WLhq----------------Q~EKQR----iiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~GaPyg 1307 (1470)
T KOG1879|consen 1250 --WLHQ----------------QTEKQR----IIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGGAPYG 1307 (1470)
T ss_pred --hhhh----------------hhhhhh----hhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCCCccc
Confidence 0000 011223 134455578888899 89999999999999999999999999999999
Q ss_pred eecccccch----------hhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccC--------Cccc
Q 006959 478 AVQSCSVSL----------GQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM--------GEES 539 (624)
Q Consensus 478 AVedc~~~~----------~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~--------DQdl 539 (624)
-++-|..+. |.+++.| ....|--|...|+||++.|+..-..++.-..+.... |||+
T Consensus 1308 YtPfCdsR~EMDGyRFWK~GYW~~hL------~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDL 1381 (1470)
T KOG1879|consen 1308 YTPFCDSRREMDGYRFWKQGYWKKHL------RGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDL 1381 (1470)
T ss_pred cCccccccccccchhHHhhhHHHHHh------ccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhccccc
Confidence 999997641 1222322 235688999999999999998888887665555421 9999
Q ss_pred ccccccccccccccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccC----CcchhHHHHHHHHhh
Q 006959 540 KEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLEL----GIPRYKKFWKKFLNQ 612 (624)
Q Consensus 540 LN~gtLPp~li~F~~~i~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~----~~~~y~~lW~kYl~~ 612 (624)
-| ++...-.|+.||..|-++.- ..+.+..+++++|--+.+ ||.+. +..+....|..|-..
T Consensus 1382 PN-------nm~hqVpIkSLPqeWLWCET----WC~d~skkkAktIDLCnN--P~TKEpKL~~A~Riv~EW~dyD~E 1445 (1470)
T KOG1879|consen 1382 PN-------NMQHQVPIKSLPQEWLWCET----WCDDESKKKAKTIDLCNN--PLTKEPKLDAARRIVSEWTDYDAE 1445 (1470)
T ss_pred cc-------cceeecccccCCcchhhhhh----hcCchhhhhchhhhhhcC--ccccchhhHHHhhhcCCCcccchH
Confidence 88 36667788999999977532 334456778999998874 88764 233445566665443
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=8.4e-05 Score=78.16 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeeccc
Q 006959 435 HLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSC 482 (624)
Q Consensus 435 y~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc 482 (624)
+.++.+-+.. ++|||+|||+|.||.+++++||+.. -+-.+|.+|.
T Consensus 157 ftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~ 201 (368)
T COG5597 157 FTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDV 201 (368)
T ss_pred hHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCch
Confidence 3344444433 6899999999999999999999865 2344555553
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=95.50 E-value=0.1 Score=51.71 Aligned_cols=144 Identities=14% Similarity=0.011 Sum_probs=76.3
Q ss_pred chHHHHHHh-hhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccc
Q 006959 430 ISVFSHLHY-LLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSG 508 (624)
Q Consensus 430 lS~lny~Rf-~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~~~~~~~yl~~~~f~~~~~yfNSG 508 (624)
+..+...|. ++-+++..=--|+|+|+|+|..+|..++++ -.+.-+.+..|+.... ........+|+|
T Consensus 48 ~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~--~~~~Di~~~~d~~~~~----------~~~~~~~~~n~G 115 (212)
T PF03407_consen 48 FQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFE--NPDADILFSSDGWDGT----------NSDRNGNLVNTG 115 (212)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhc--cCCCceEEecCCCccc----------chhhcCCccccc
Confidence 344556665 455666643569999999999999999992 1333344444554210 011223346999
Q ss_pred eEEEechhHhhHhHHHHHH----HHHHHccC--CcccccccccccccccccCceEEeCCcccccCCCCCCC-CCHh-h--
Q 006959 509 LNIVDLARWRELDLTKTYQ----RLVREVSM--GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYG-LNIE-A-- 578 (624)
Q Consensus 509 VlLiNL~kWR~~nitek~~----~~l~~~~~--DQdlLN~gtLPp~li~F~~~i~~Ld~~WN~~~lg~~~~-~~~~-~-- 578 (624)
++.+-- ..-+.+++ +.+.+... ||.++|........-.-.-++..||..--..|.+|-.. .... .
T Consensus 116 ~~~~r~-----t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~ 190 (212)
T PF03407_consen 116 FYYFRP-----TPRTIAFLEDWLERMAESPGCWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDWAWVPT 190 (212)
T ss_pred eEEEec-----CHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccceeecchhhhhcc
Confidence 999943 33333333 23333333 99999841100000001225567776544333322111 1111 1
Q ss_pred hcCCeEEEccCC
Q 006959 579 IKKAAVLHYNGN 590 (624)
Q Consensus 579 i~~~~IIHY~G~ 590 (624)
...|.+||.++.
T Consensus 191 ~~~p~~vH~n~~ 202 (212)
T PF03407_consen 191 KNKPYIVHANCC 202 (212)
T ss_pred ccccceEEEcCC
Confidence 357999999863
No 25
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=88.51 E-value=0.66 Score=48.54 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=26.6
Q ss_pred hhhhhcccCeEEEEecCeeeccCchHHHccc
Q 006959 440 LPEIFQSLTKVVVLDDDVVVQKDLSALWDIN 470 (624)
Q Consensus 440 IPeLlP~ldKVLYLD~DvVV~~DLseLw~iD 470 (624)
+.-++-..+.||+||+|.|...|++.||+.+
T Consensus 84 lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 84 LALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred hhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 4445667899999999999999999999854
No 26
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=84.73 E-value=3 Score=46.37 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=43.9
Q ss_pred cccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCC--eeeeecccccchhhhhhhhccCCCCCCCCc
Q 006959 427 MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGK--VNGAVQSCSVSLGQLKSYLGENSYDKNSCA 504 (624)
Q Consensus 427 ~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gk--viaAVedc~~~~~~~~~yl~~~~f~~~~~y 504 (624)
+.+++..-++|=.+- -.|+.+-|.|||+|.||.+-- +++.++.+ .+-.+. .+...+ -...+-.+
T Consensus 179 p~~WaKlpaLR~aM~-~~PeaEWiWWLDsDALImNms---felPlery~~~NlVih-------g~~~~l---~~~kdW~G 244 (429)
T PLN03182 179 AGFWAKLPLLRKLML-AHPEVEWIWWMDSDALFTDMT---FEIPLEKYEGYNLVIH-------GWDELV---YDQKSWIG 244 (429)
T ss_pred CcchhHHHHHHHHHH-HCCCceEEEEecCCceeecCC---CCCCHhHcCCcCeeec-------cchhhh---eeccccCc
Confidence 456666666664333 258999999999999998631 22333211 011111 011100 01223458
Q ss_pred cccceEEEechhHhh
Q 006959 505 WMSGLNIVDLARWRE 519 (624)
Q Consensus 505 fNSGVlLiNL~kWR~ 519 (624)
.|+|+++|-.-.|--
T Consensus 245 LNtGsFLIRNcqWSl 259 (429)
T PLN03182 245 LNTGSFLIRNCQWSL 259 (429)
T ss_pred cceeeEEEEcCHHHH
Confidence 999999996666654
No 27
>PLN02867 Probable galacturonosyltransferase
Probab=81.83 E-value=4.3 Score=46.61 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCC--CCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHH
Q 006959 203 DKLTRALRQNIQEVERVLSESATD--VDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMK 277 (624)
Q Consensus 203 ~~~~~el~~~~~~~~~~l~~~~~d--~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~ 277 (624)
.++.+|+.+-..|... .+...+ .+.|+++++.+.+|+...++++++..-..+|..++...+++.-.|..+...
T Consensus 92 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~ 166 (535)
T PLN02867 92 LKLREELTRALVEAKE--QDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWH 166 (535)
T ss_pred hHHHHHHHHHHHHhhh--ccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777776666321 121122 247888889999999999999988888888888888777777766665443
No 28
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=59.37 E-value=36 Score=38.49 Aligned_cols=118 Identities=14% Similarity=0.270 Sum_probs=64.0
Q ss_pred CCceEEEEEeCC-CcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHH
Q 006959 324 PSLHHYVIFSTN-VLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAIL 402 (624)
Q Consensus 324 ~~~iHIa~~sDN-vLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l 402 (624)
...+.|+++.-| .-+..=+|.|++.+....+.+.+.|--|+-+.+..+. ...+... +..+. +..+..+.
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~v---i~~y~~~-v~~i~--~~~~~~i~---- 161 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEV---IKSYGDQ-VTYIQ--HPDFSPIT---- 161 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHH---HHGGGGG-SEEEE---S--S-------
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHH---HHHhhhh-heeee--cCCcCCce----
Confidence 345667776556 4445668999999876556677777777765554433 2334321 22221 11111100
Q ss_pred HhhccccchhhccccCCCCCc-ccccccchHHHHHHhhhhhhhc--ccCeEEEEecCeeeccCchHHHc
Q 006959 403 IHMFLPVEYRVSLLSVDGPSI-HSKMQYISVFSHLHYLLPEIFQ--SLTKVVVLDDDVVVQKDLSALWD 468 (624)
Q Consensus 403 ~~l~~~~ef~~~f~~~~~p~~-~~R~~ylS~lny~Rf~IPeLlP--~ldKVLYLD~DvVV~~DLseLw~ 468 (624)
..|.. +. ..|..++.|+|.-|-.+|. .+++||.|.+|+.|--|.-+-|+
T Consensus 162 ----------------~~~~~~~~-~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 162 ----------------IPPKEKKF-KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp ------------------TT-GGG-HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred ----------------eCcccccc-cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 00111 11 2577788999999999995 58999999999999999877665
No 29
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=56.95 E-value=35 Score=37.24 Aligned_cols=115 Identities=16% Similarity=0.255 Sum_probs=67.9
Q ss_pred eEEEEEeCCCc-ccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhh
Q 006959 327 HHYVIFSTNVL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHM 405 (624)
Q Consensus 327 iHIa~~sDNvL-aasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~~l 405 (624)
..|++++=|-. ...-+|.|++++.+..+...++|..|+-..+..+. ...+.. .+.++.-.++.
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~---v~~~~~-~i~~i~~~~~~------------ 65 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADV---AKSFGD-GVTHIQHPPIS------------ 65 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHH---HHhhcc-ccEEEEccccc------------
Confidence 35677655643 45568999998753345678999999876543332 112211 11111100000
Q ss_pred ccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcc--cCeEEEEecCeeeccCchHHHc
Q 006959 406 FLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQS--LTKVVVLDDDVVVQKDLSALWD 468 (624)
Q Consensus 406 ~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~--ldKVLYLD~DvVV~~DLseLw~ 468 (624)
..+...+ .++ ..|..+..|++.-+-.+|.. .++||+||+|+++--|.-+.++
T Consensus 66 ---------~~~~~~~-~~~-~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~ 119 (334)
T cd02514 66 ---------IKNVNPP-HKF-QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQ 119 (334)
T ss_pred ---------ccccCcc-ccc-chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHH
Confidence 0000100 011 14667788888888888864 8999999999999999655444
No 30
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=56.63 E-value=5.3 Score=44.17 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=22.6
Q ss_pred HHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHc
Q 006959 433 FSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWD 468 (624)
Q Consensus 433 lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~ 468 (624)
.+..|+.+=.=+.- ||||+||||.++++.|=+
T Consensus 228 Sdl~RLA~LyKYGG----vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 228 SDLSRLALLYKYGG----VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHHHHhCC----EEeeccEEEecccccccc
Confidence 34567654322222 899999999999999864
No 31
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.32 E-value=33 Score=34.56 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=75.9
Q ss_pred ccccccchhHHHHHhhhHHHHHHhhhhhhcCCCC-ChHHHHHHHHHHHHHHHHhhc--ccCCCCCCchHHHHHHHHHHHH
Q 006959 168 REHREEMKDTMVKKLKDQLFVARAYYPSIAKLPS-QDKLTRALRQNIQEVERVLSE--SATDVDLPPGIEKKIQRMEAAI 244 (624)
Q Consensus 168 ~~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~-~~~~~~el~~~~~~~~~~l~~--~~~d~~l~~~~~~~~~~m~~~~ 244 (624)
.|..+.|-|..++.|.++|.-|+.=+..+..... -.+-..++...+.+++.-... ...+.||-+.+.......+..+
T Consensus 21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~ 100 (221)
T PF04012_consen 21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA 100 (221)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3455567888999999999988865432222111 122233555555555533333 3445668888888888888888
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006959 245 TKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSA 280 (624)
Q Consensus 245 ~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~ 280 (624)
...+.........+.+|+.-+..+|.++...+.+..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888889999999999888876554433
No 32
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=55.24 E-value=8.6 Score=39.68 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=12.5
Q ss_pred cccCeEEEEecCeeeccCchHH
Q 006959 445 QSLTKVVVLDDDVVVQKDLSAL 466 (624)
Q Consensus 445 P~ldKVLYLD~DvVV~~DLseL 466 (624)
|+.+-|+|||+|.+|..-=-+|
T Consensus 75 P~~~wv~~lD~Dali~n~~~~L 96 (239)
T PF05637_consen 75 PEAEWVWWLDSDALIMNPDFSL 96 (239)
T ss_dssp TT-SEEEEE-TTEEE-------
T ss_pred CCCCEEEEEcCCeEEEeccccc
Confidence 8899999999999998744444
No 33
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=54.92 E-value=33 Score=34.88 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=71.6
Q ss_pred ccccccchhHHHHHhhhHHHHHHhhhhhh-cCCCCChHHHHHHHHHHHHHHHHhhc--ccCCCCCCchHHHHHHHHHHHH
Q 006959 168 REHREEMKDTMVKKLKDQLFVARAYYPSI-AKLPSQDKLTRALRQNIQEVERVLSE--SATDVDLPPGIEKKIQRMEAAI 244 (624)
Q Consensus 168 ~~~~~~~~d~~~~~~~dq~~~a~~y~~~~-a~~~~~~~~~~el~~~~~~~~~~l~~--~~~d~~l~~~~~~~~~~m~~~~ 244 (624)
.|..+.|-|..++.|+|+|.-||.=++.+ |..+.-.+-..++..++.+++.--.. ...+.||-+.+......-+..+
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34455688899999999999888654322 22122233344666677776632222 2235567777766655666666
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006959 245 TKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSA 280 (624)
Q Consensus 245 ~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~ 280 (624)
...+.........+.+|++-+..+|.++...+.+..
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555666778899888888888876554433
No 34
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=50.47 E-value=52 Score=28.81 Aligned_cols=69 Identities=12% Similarity=0.215 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCC--CCchHHHHHHHHHHHHHHhhcCC--CcchHHHHHHHHHHHHhHHHHHHHH
Q 006959 207 RALRQNIQEVERVLSESATDVD--LPPGIEKKIQRMEAAITKAKSVP--VDCSNVDKKFRQILDMTNDEANFHM 276 (624)
Q Consensus 207 ~el~~~~~~~~~~l~~~~~d~~--l~~~~~~~~~~m~~~~~~~k~~~--~~~~~~~~kl~~~~~~~e~~~~~~~ 276 (624)
+++...|+--|+++|.||..-| +...+.+.|+..+.-+.+|++.. .|- .+...=.+.|+..|.+++.++
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 5777889999999999986544 56778888888888888888776 333 444566678888888887643
No 35
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.75 E-value=63 Score=35.45 Aligned_cols=48 Identities=13% Similarity=0.125 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006959 237 IQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQ 284 (624)
Q Consensus 237 ~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~ 284 (624)
|...-..++..|+..-+-..-.+||++|.+.+|+++....++...|..
T Consensus 227 me~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333444444444445455555689999999999999999999888764
No 36
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=45.55 E-value=78 Score=29.17 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHhhcCCCcc-hHHHHHHHHHHHHhHHHHHHHHHHH
Q 006959 203 DKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDC-SNVDKKFRQILDMTNDEANFHMKQS 279 (624)
Q Consensus 203 ~~~~~el~~~~~~~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~~-~~~~~kl~~~~~~~e~~~~~~~~q~ 279 (624)
.++.-||+.=+-++|.+|..+...++ .++.+.=...+..+.+++.-.-+- ..++.+-|++...||+-++.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 67778999999999999998776542 233333333444555554433222 6778999999999999999765554
No 37
>PRK10132 hypothetical protein; Provisional
Probab=44.74 E-value=91 Score=28.76 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHH
Q 006959 203 DKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQS 279 (624)
Q Consensus 203 ~~~~~el~~~~~~~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~ 279 (624)
++|..||+.=+.++|.+|.++..++ -..+.+.=...+..+..|++-.-+-..+..+.|...+.+++-++.+-=++
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~--~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~s 89 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDA--KGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCS 89 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 6888899999999999997766543 12334444455667777776665555566778899999999988765554
No 38
>PLN02769 Probable galacturonosyltransferase
Probab=44.25 E-value=6.3e+02 Score=30.22 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHHHHh-hcccC--CCCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHH
Q 006959 202 QDKLTRALRQNIQEVERVL-SESAT--DVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDE 271 (624)
Q Consensus 202 ~~~~~~el~~~~~~~~~~l-~~~~~--d~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~ 271 (624)
....+|.||-||--....+ +=|.. -..|-++..+.|++.+.++.+|..-..=-..+..|+++|=+...+-
T Consensus 179 ~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~a 251 (629)
T PLN02769 179 KDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARA 251 (629)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHH
Confidence 3678889998887554434 33333 3346777888999999999999886655566677787775555443
No 39
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=42.56 E-value=55 Score=30.54 Aligned_cols=40 Identities=25% Similarity=0.615 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCchH----HHHHHHHHHHHHHhhcCC
Q 006959 208 ALRQNIQEVERVLSESATDVDLPPGI----EKKIQRMEAAITKAKSVP 251 (624)
Q Consensus 208 el~~~~~~~~~~l~~~~~d~~l~~~~----~~~~~~m~~~~~~~k~~~ 251 (624)
+|+.+|++++|+|... +||+.+ +..+++++..+..+....
T Consensus 1 klK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~~~ 44 (114)
T PF10153_consen 1 KLKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAERKE 44 (114)
T ss_pred CHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999766 688876 335667776666654443
No 40
>PLN03181 glycosyltransferase; Provisional
Probab=42.32 E-value=38 Score=38.21 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=23.6
Q ss_pred ccchHHHHHHhhhhhhhcccCeEEEEecCeeeccC
Q 006959 428 QYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKD 462 (624)
Q Consensus 428 ~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~D 462 (624)
..++..-.+|=.+- -+|+.+-|.|||.|+||.+-
T Consensus 181 ~~WaKipalRaAM~-a~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 181 SYWAKLPVVRAAML-AHPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred hhhhHHHHHHHHHH-HCCCceEEEEecCCceeecC
Confidence 44555544552221 16899999999999999865
No 41
>PRK10698 phage shock protein PspA; Provisional
Probab=41.41 E-value=71 Score=32.79 Aligned_cols=113 Identities=10% Similarity=0.084 Sum_probs=71.5
Q ss_pred cccccchhHHHHHhhhHHHHHHhhhhh-hcCCCCChHHHHHHHHHHHHHHHHhhc--ccCCCCCCchHHHHHHHHHHHHH
Q 006959 169 EHREEMKDTMVKKLKDQLFVARAYYPS-IAKLPSQDKLTRALRQNIQEVERVLSE--SATDVDLPPGIEKKIQRMEAAIT 245 (624)
Q Consensus 169 ~~~~~~~d~~~~~~~dq~~~a~~y~~~-~a~~~~~~~~~~el~~~~~~~~~~l~~--~~~d~~l~~~~~~~~~~m~~~~~ 245 (624)
|..+.|-|.+++.|+|++.-+|.=++. +|.-+.-.+-..++..++.++++--.- ...+.||-+.+...-+.....+.
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 445558888999999999887764322 222222233344666666666532222 33456687776665555666666
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006959 246 KAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAF 281 (624)
Q Consensus 246 ~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~ 281 (624)
..+.........+.+|++-+..++.++...+.+...
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777789999999999888765544333
No 42
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=39.84 E-value=21 Score=39.06 Aligned_cols=139 Identities=16% Similarity=0.029 Sum_probs=70.3
Q ss_pred hcccCeEEEEecCeeeccCchHHHcccCCCCeeeeeccccc-----------------chh--hhhhhhccCCCCCCCCc
Q 006959 444 FQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV-----------------SLG--QLKSYLGENSYDKNSCA 504 (624)
Q Consensus 444 lP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~-----------------~~~--~~~~yl~~~~f~~~~~y 504 (624)
|.+.++++|+|+|+-+..++..++++-.. .-.+...|.. ... .+.++-....-+...+.
T Consensus 122 ~~~~~a~i~~~~~i~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 199 (369)
T KOG1950|consen 122 LIEDGAAIYLVDDIQRFRNDDANFDVPNE--LNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLI 199 (369)
T ss_pred eeccCceEEEecchhhccCccccccccch--hcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccce
Confidence 45679999999999999999988876532 1223333221 000 01111100001123456
Q ss_pred cccceEEEechhHhhHhHHHHHHHHHHH----ccCCcccccccccccccccccCceEEeCCccccc-CCCCCCC--CC--
Q 006959 505 WMSGLNIVDLARWRELDLTKTYQRLVRE----VSMGEESKEAVALRGSLLTFQDLVYALDGVWALS-GLGHDYG--LN-- 575 (624)
Q Consensus 505 fNSGVlLiNL~kWR~~nitek~~~~l~~----~~~DQdlLN~gtLPp~li~F~~~i~~Ld~~WN~~-~lg~~~~--~~-- 575 (624)
||+|++++--.----.. +....+. ...+|++++ ..|.....+.++..|.. +..+... ..
T Consensus 200 ~n~~~~v~~ps~~~~~~----~~~~~~~~~~~~~~~q~~l~--------~~f~~~~~~~~~~~n~~~~~~~~~p~~~~l~ 267 (369)
T KOG1950|consen 200 FNSGLLVFEPSLCNYKD----LMEFSEEFESYNGADQGFLH--------LIFSWIPDRPPPSVNLNLAKLWRHPKKNDLS 267 (369)
T ss_pred eccCccccCCCccchhh----HHHhhcccCCCCCccchhhH--------HHhhcccCCCcccccccccccccCccccchh
Confidence 99999998322111111 2223222 123899988 34544333677777754 2222211 11
Q ss_pred HhhhcCCeEEEccCCCCCccc
Q 006959 576 IEAIKKAAVLHYNGNMKPWLE 596 (624)
Q Consensus 576 ~~~i~~~~IIHY~G~~KPW~~ 596 (624)
......-..+||.|..|||..
T Consensus 268 ~~~~~~~~~~~y~~~~~p~~~ 288 (369)
T KOG1950|consen 268 RASSVLRYALHYLGANKPELC 288 (369)
T ss_pred hcccccchhhhccccCCCCcc
Confidence 111122345699997677754
No 43
>PRK10404 hypothetical protein; Provisional
Probab=38.73 E-value=1.2e+02 Score=27.69 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHhhcCCCc-chHHHHHHHHHHHHhHHHHHHHHHH
Q 006959 200 PSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVD-CSNVDKKFRQILDMTNDEANFHMKQ 278 (624)
Q Consensus 200 ~~~~~~~~el~~~~~~~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~-~~~~~~kl~~~~~~~e~~~~~~~~q 278 (624)
..++++..||+.=+.++|.+|.++..++ -..+.+.=...+..+..+|.-.-| -..+..|.|++.+.+++-++.+-=|
T Consensus 5 ~~~~~l~~dl~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~ 82 (101)
T PRK10404 5 FGDTRIDDDLTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQ 82 (101)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 4568888999999999999998876542 122223333344444555522212 1234456789999999998875544
Q ss_pred H
Q 006959 279 S 279 (624)
Q Consensus 279 ~ 279 (624)
+
T Consensus 83 a 83 (101)
T PRK10404 83 G 83 (101)
T ss_pred H
Confidence 3
No 44
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=35.24 E-value=41 Score=25.14 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 006959 28 GVLFLVILSMLVPLAFLLGL 47 (624)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ 47 (624)
|.+|- ++.++||-+||+.|
T Consensus 7 gfiAt-~Lfi~iPt~FLlil 25 (35)
T PRK04989 7 GFVAS-LLFVLVPTVFLIIL 25 (35)
T ss_pred HHHHH-HHHHHHHHHHHHHH
Confidence 44443 46678999999995
No 45
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=34.79 E-value=20 Score=31.68 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=26.8
Q ss_pred cchHHHHHHhhhhhhhcccCeEEEEecCeeeccCc-hHH
Q 006959 429 YISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDL-SAL 466 (624)
Q Consensus 429 ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DL-seL 466 (624)
+.....++|+.+=....- ||+|.|+++.++| ..+
T Consensus 62 ~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~ 96 (103)
T PF04488_consen 62 YAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPW 96 (103)
T ss_pred hHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhh
Confidence 445677899988766654 8999999999999 554
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=32.03 E-value=3.2e+02 Score=34.98 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHH----------HHhhcccCCCCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHH---HHHHHhH
Q 006959 203 DKLTRALRQNIQEVE----------RVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFR---QILDMTN 269 (624)
Q Consensus 203 ~~~~~el~~~~~~~~----------~~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~---~~~~~~e 269 (624)
-+.+++|-++|++.. +.+.+...+.+||-+..+.-.-|++.-.++.+.. +-..|..+.| +...+++
T Consensus 1470 ~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~-nVd~IL~~T~~di~ra~~L~ 1548 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLP-NVDAILSRTKGDIARAENLQ 1548 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc-cHHHHHHhhhhhHHHHHHHH
Confidence 445566666666553 5555566666777666655444444444444433 5555655555 3444555
Q ss_pred HHHHHHHHHHHH
Q 006959 270 DEANFHMKQSAF 281 (624)
Q Consensus 270 ~~~~~~~~q~~~ 281 (624)
++++.+++.++-
T Consensus 1549 s~A~~a~~~A~~ 1560 (1758)
T KOG0994|consen 1549 SEAERARSRAED 1560 (1758)
T ss_pred HHHHHHHhHHHH
Confidence 666655554443
No 47
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.53 E-value=1.4e+02 Score=30.96 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=71.5
Q ss_pred cccccchhHHHHHhhhHHHHHHhhhhhhcCCCCC-hHHHH---HHHHHHHHHHHHhhc--ccCCCCCCchHHHHHHHHHH
Q 006959 169 EHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQ-DKLTR---ALRQNIQEVERVLSE--SATDVDLPPGIEKKIQRMEA 242 (624)
Q Consensus 169 ~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~-~~~~~---el~~~~~~~~~~l~~--~~~d~~l~~~~~~~~~~m~~ 242 (624)
|..+.|-|..++-|+++|.-||-= +|+...+ .+|-+ ++..++.++|.---. ...+.+|-+.+...+...+.
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~---~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~ 99 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQA---LAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLED 99 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344567788889999998888865 3444433 34444 444455555421111 33445677788888888888
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHH
Q 006959 243 AITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQ 278 (624)
Q Consensus 243 ~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q 278 (624)
.+..-++..-.......+||..+..+|.++...+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 100 LAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777777777777889999999999888765544
No 48
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=29.23 E-value=3e+02 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=21.6
Q ss_pred ccchhhcccccCCCCCeEEEEEeCCCCHHHHHHH
Q 006959 340 SVVINSTVLCARESKNQVFHVLTDGQNYFAMKLW 373 (624)
Q Consensus 340 sVvI~Sil~N~~~p~~ivFHIltD~in~~am~~w 373 (624)
.-++.|+..... ..+.++|++++.+.+....+
T Consensus 13 ~~~l~s~~~~~~--~~~~i~i~~~~~~~~~~~~~ 44 (156)
T cd00761 13 ERCLESLLAQTY--PNFEVIVVDDGSTDGTLEIL 44 (156)
T ss_pred HHHHHHHHhCCc--cceEEEEEeCCCCccHHHHH
Confidence 346778777664 35788899998766555443
No 49
>PRK10807 paraquat-inducible protein B; Provisional
Probab=28.38 E-value=1.7e+02 Score=34.04 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=26.9
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006959 229 LPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFL 282 (624)
Q Consensus 229 l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l 282 (624)
||.++.+.++.++.++..+.. -+..-..|+++|+.+++-+++.+--..+|
T Consensus 474 Lp~~L~~TL~~l~~~l~~~~~----~s~~~~~l~~tl~~l~~~~r~lr~l~~~L 523 (547)
T PRK10807 474 LPADMQKTLRELNRSMQGFQP----GSPAYNKMVADMQRLDQVLRELQPVLKTL 523 (547)
T ss_pred HHHHHHHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666555555332 22233567777777777666544444443
No 50
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.64 E-value=55 Score=33.81 Aligned_cols=130 Identities=15% Similarity=0.309 Sum_probs=74.8
Q ss_pred HHHHhhhHHHHHHhhhhhhcCCCCC-hHHHHHHHHHHHHHHH-----------Hhhc--ccCCCCCCchHHHHHHHHHHH
Q 006959 178 MVKKLKDQLFVARAYYPSIAKLPSQ-DKLTRALRQNIQEVER-----------VLSE--SATDVDLPPGIEKKIQRMEAA 243 (624)
Q Consensus 178 ~~~~~~dq~~~a~~y~~~~a~~~~~-~~~~~el~~~~~~~~~-----------~l~~--~~~d~~l~~~~~~~~~~m~~~ 243 (624)
-+++++.|+-..++|...+.+.-.+ .+-..+|.++|.+++. ++.+ .-...|+|-...++.+.++.+
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L 136 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARL 136 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 5788888999999886444332222 3333466666666652 2222 223467777776555554433
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhcCcc
Q 006959 244 ITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPS 310 (624)
Q Consensus 244 ~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~~~~ 310 (624)
-....+..+ .++.|+|.+++....++..-.+-+.+=..|...+-|...-+|-+-...-||.+..
T Consensus 137 ~~~l~~~dv---~~~ek~r~vlea~~~E~~yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~t~D 200 (251)
T PF11932_consen 137 RAMLDDADV---SLAEKFRRVLEAYQIEMEYGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQTLD 200 (251)
T ss_pred HHhhhccCC---CHHHHHHHHHHHHHHHHHhCCceeEEEEEEeECCeEEEEEEEeecchhheeECCC
Confidence 333322222 3458999999999999887555544433444455556666666555555554443
No 51
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.15 E-value=3.4e+02 Score=30.04 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=57.9
Q ss_pred HHHhhhHHHHHHhhhhhhcCCCCChH----HHHHHHHHHHHHH-------HHhhcccCCC-CCCchHHHHHHHHHHHHHH
Q 006959 179 VKKLKDQLFVARAYYPSIAKLPSQDK----LTRALRQNIQEVE-------RVLSESATDV-DLPPGIEKKIQRMEAAITK 246 (624)
Q Consensus 179 ~~~~~dq~~~a~~y~~~~a~~~~~~~----~~~el~~~~~~~~-------~~l~~~~~d~-~l~~~~~~~~~~m~~~~~~ 246 (624)
-.+|+.||+.++. + ++|.++.-+ +++-++++-+-+| +-.+|-.-.+ .|-+++.+.++--..+...
T Consensus 108 nqkL~nqL~~~~~-v--f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e 184 (401)
T PF06785_consen 108 NQKLKNQLFHVRE-V--FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDE 184 (401)
T ss_pred HHHHHHHHHHHHH-H--HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999998 3 888887733 3433333322232 2222211110 1222333332222223333
Q ss_pred hhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 006959 247 AKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAV 287 (624)
Q Consensus 247 ~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa 287 (624)
=+.-.....+|..|=.+-+..+|.+|+-.|-.-+=|-||+.
T Consensus 185 yQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 185 YQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444677888777778888889888876655555555554
No 52
>CHL00080 psbM photosystem II protein M
Probab=26.43 E-value=72 Score=23.72 Aligned_cols=19 Identities=42% Similarity=0.579 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 006959 28 GVLFLVILSMLVPLAFLLGL 47 (624)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ 47 (624)
|.+|-. +.++||-+||+.|
T Consensus 7 gfiAt~-LFi~iPt~FLlil 25 (34)
T CHL00080 7 AFIATA-LFILVPTAFLLII 25 (34)
T ss_pred HHHHHH-HHHHHHHHHHHHh
Confidence 444433 5677999999995
No 53
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=25.97 E-value=81 Score=23.35 Aligned_cols=15 Identities=53% Similarity=0.773 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcc
Q 006959 33 VILSMLVPLAFLLGL 47 (624)
Q Consensus 33 ~~~~~~~~~~~~~~~ 47 (624)
+++.++||-+||+.|
T Consensus 11 t~Lfi~iPt~FLiil 25 (33)
T TIGR03038 11 TLLFILVPTVFLLIL 25 (33)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346678999999995
No 54
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.88 E-value=4.7e+02 Score=23.21 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=18.7
Q ss_pred ccCeEEEEecCeeeccC-chHHHcc
Q 006959 446 SLTKVVVLDDDVVVQKD-LSALWDI 469 (624)
Q Consensus 446 ~ldKVLYLD~DvVV~~D-LseLw~i 469 (624)
..+-++++|+|.++..+ +..+++.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHH
Confidence 56899999999999876 5555553
No 55
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=25.64 E-value=47 Score=34.29 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.2
Q ss_pred hhhhhhcccCeEEEEecCeeeccC
Q 006959 439 LLPEIFQSLTKVVVLDDDVVVQKD 462 (624)
Q Consensus 439 ~IPeLlP~ldKVLYLD~DvVV~~D 462 (624)
.+..+||+++-||+||+||.|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 456778899999999999988754
No 56
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=25.51 E-value=2.8e+02 Score=27.62 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHh-hcccCCCCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHH
Q 006959 206 TRALRQNIQEVERVL-SESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDE 271 (624)
Q Consensus 206 ~~el~~~~~~~~~~l-~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~ 271 (624)
..-|..||.++|+.+ |+......-|..+.+.+......|..|.+.. .|+++.+...|+-
T Consensus 7 l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~r-------e~i~~l~k~~~eL 66 (174)
T PF07426_consen 7 LDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKR-------ERIKELFKRIEEL 66 (174)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHccc-------HHHHHHHHHHHHH
Confidence 457889999999887 6544433446667677777777777776666 4666666655554
No 57
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=24.33 E-value=77 Score=23.18 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 006959 28 GVLFLVILSMLVPLAFLLGL 47 (624)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ 47 (624)
|.+| +.+.++||-+||+.|
T Consensus 7 ~fiA-taLfi~iPt~FLiil 25 (31)
T PF05151_consen 7 AFIA-TALFILIPTAFLIIL 25 (31)
T ss_dssp HHHH-HHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHhhe
Confidence 3344 346678999999986
No 58
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=23.94 E-value=80 Score=25.19 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 006959 28 GVLFLVILSMLVPLAFLLGL 47 (624)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ 47 (624)
|.+|- ++-++||-+||+.|
T Consensus 7 gfiAt-aLFi~iPT~FLlil 25 (50)
T PRK14094 7 GFVAS-LLFVGVPTIFLIGL 25 (50)
T ss_pred HHHHH-HHHHHHHHHHhhhe
Confidence 44443 35677999999994
No 59
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.26 E-value=1.6e+02 Score=30.58 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=63.2
Q ss_pred HHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 006959 188 VARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDM 267 (624)
Q Consensus 188 ~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~ 267 (624)
.++-+- .++.+.+.+++..|++..+.+| +.|-..-.+-.+.+.+-+..||.+|..+++-.-.....+.++..-+..
T Consensus 17 k~~i~~-e~~~~e~ee~~L~e~~kE~~~L---~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~ 92 (230)
T PF10146_consen 17 KNEILQ-EVESLENEEKCLEEYRKEMEEL---LQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKP 92 (230)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344442 5666677788888888777755 333222222346777889999999999999885444455555555555
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhc
Q 006959 268 TNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFK 307 (624)
Q Consensus 268 ~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~ 307 (624)
+-++++..++. . ++-..+|-..-==...++.+||.
T Consensus 93 Lk~~in~~R~e-~----lgl~~Lp~l~eE~~~~~~~~~~~ 127 (230)
T PF10146_consen 93 LKDEINELRKE-Y----LGLEPLPSLEEEELSKISPDYLQ 127 (230)
T ss_pred HHHHHHHHHHH-H----cCCCCCCccccccccccCHHHhh
Confidence 55555542221 1 44445554331112344555555
No 60
>PF05397 Med15_fungi: Mediator complex subunit 15; InterPro: IPR008626 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family represents subunit 15 of the Mediator complex in fungi. It contains Saccharomyces cerevisiae GAL11 (Med15) protein. Gal11 (Med15) and Sin4 (Med16) proteins are S. cerevisiae global transcription factors that regulate transcription of a variety of genes, both positively and negatively. Gal11, in a major part, functions in the activation of transcription, whereas Sin4 has an opposite role [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.50 E-value=71 Score=29.63 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=37.7
Q ss_pred cccccchhHHHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHh
Q 006959 169 EHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 220 (624)
Q Consensus 169 ~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l 220 (624)
|.+..+++ .++.+.|.+....+++|-++++.+|+..+|+|-+=-=-+.+.+
T Consensus 32 eeK~~i~~-~l~~~~~m~~~vd~li~~f~~lt~ne~~~k~LlqMr~~~~~q~ 82 (115)
T PF05397_consen 32 EEKAAIRQ-QLQEIQDMLARVDSLIPWFYKLTKNEENTKRLLQMRIMLKEQF 82 (115)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 34555555 4478888999999999999999999999998865333244444
No 61
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=20.96 E-value=1.1e+02 Score=37.02 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=29.9
Q ss_pred HHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcc
Q 006959 178 MVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSES 223 (624)
Q Consensus 178 ~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~ 223 (624)
+||++-|- +-|+.| |---+.....+...|++.||+|++.+|+..
T Consensus 237 kIkKIcd~-f~a~~y-p~p~~~~er~~~~~~v~~ri~DL~~Vl~~t 280 (829)
T KOG2189|consen 237 KIKKICDG-FGATLY-PCPESPEERKEMLLEVNTRISDLQTVLDQT 280 (829)
T ss_pred HHHHHHhc-cCcEee-cCCCChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555443 456677 532333334788999999999999999875
No 62
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=20.41 E-value=1.3e+02 Score=30.22 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=24.2
Q ss_pred cccCeEEEEecCeeeccC-chHHHcccCCCCeeeee
Q 006959 445 QSLTKVVVLDDDVVVQKD-LSALWDINMGGKVNGAV 479 (624)
Q Consensus 445 P~ldKVLYLD~DvVV~~D-LseLw~iDL~gkviaAV 479 (624)
.+.+-|+++|+|+++..| |..++..=..+.-+|||
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v 107 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGV 107 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEE
Confidence 367899999999999988 56676531123335555
Done!