Query 006959
Match_columns 624
No_of_seqs 324 out of 1320
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 5.8E-46 2E-50 380.7 15.2 254 325-617 4-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 4.9E-41 1.7E-45 348.3 15.6 246 327-610 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 2.5E-25 8.6E-30 233.9 13.2 223 326-613 4-256 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 5.6E-24 1.9E-28 217.4 9.5 215 333-612 13-256 (263)
5 1o7q_A N-acetyllactosaminide a 60.6 46 0.0016 34.3 10.4 115 440-566 132-261 (289)
6 3v1a_A Computational design, M 48.8 23 0.00077 27.2 4.4 38 182-220 6-43 (48)
7 3dfz_A SIRC, precorrin-2 dehyd 47.4 65 0.0022 31.6 8.8 102 148-287 119-221 (223)
8 1fo8_A Alpha-1,3-mannosyl-glyc 37.9 1.1E+02 0.0037 31.9 9.2 40 429-468 80-121 (343)
9 1yzm_A FYVE-finger-containing 34.7 41 0.0014 26.1 3.9 39 181-220 6-44 (51)
10 2i9o_A MHB8A peptide; beta-hai 33.6 16 0.00055 25.7 1.3 8 3-10 13-20 (37)
11 1z0k_B FYVE-finger-containing 33.2 41 0.0014 27.6 3.9 40 181-221 24-63 (69)
12 1z0j_B FYVE-finger-containing 30.7 50 0.0017 26.4 3.9 40 181-221 13-52 (59)
13 2i7u_A Four-alpha-helix bundle 30.7 16 0.00053 28.3 0.9 8 3-10 28-35 (62)
14 3arc_M Photosystem II reaction 29.0 34 0.0012 24.7 2.4 19 28-47 7-25 (36)
15 2lk9_A Bone marrow stromal ant 28.0 51 0.0018 23.5 3.1 18 29-46 12-29 (35)
16 4e61_A Protein BIM1; EB1-like 20.9 1.2E+02 0.0041 26.8 4.9 15 256-270 87-101 (106)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=5.8e-46 Score=380.73 Aligned_cols=254 Identities=14% Similarity=0.168 Sum_probs=187.4
Q ss_pred CceEEEEE-eCCCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHH
Q 006959 325 SLHHYVIF-STNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAIL 402 (624)
Q Consensus 325 ~~iHIa~~-sDNvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l 402 (624)
-.+|||++ ++||+. ++|+|+|++.|+++ ++++|||++++++.+..+.....-...+..++++.+++-.
T Consensus 4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~--------- 73 (276)
T 3tzt_A 4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDL--------- 73 (276)
T ss_dssp -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHH---------
Confidence 35899995 556775 67999999999986 6899999999999877655332211234677777764311
Q ss_pred HhhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhc-ccCeEEEEecCeeeccCchHHHcccCCCCeeeeecc
Q 006959 403 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 481 (624)
Q Consensus 403 ~~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP-~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVed 481 (624)
+. ..|. .+++|..+|+||++|+++| +++||||||+|+||++||++||++|++|+.+|||+|
T Consensus 74 ------------~~--~~~~----~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d 135 (276)
T 3tzt_A 74 ------------FS--FAKV----TDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASH 135 (276)
T ss_dssp ----------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC
T ss_pred ------------Hh--cCcc----ccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEe
Confidence 00 1121 2467899999999999999 699999999999999999999999999999999999
Q ss_pred cccchhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc-----CCcccccccccccccccccCce
Q 006959 482 CSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-----MGEESKEAVALRGSLLTFQDLV 556 (624)
Q Consensus 482 c~~~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~-----~DQdlLN~gtLPp~li~F~~~i 556 (624)
|... .+.++....+++...||||||||||||++||+.++++++++++++.. .|||++| ++|.+++
T Consensus 136 ~~~~--~~~~~~~~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN--------~~f~~~~ 205 (276)
T 3tzt_A 136 TGKT--DMANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILN--------AMYGDRI 205 (276)
T ss_dssp ----------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHH--------HHHGGGE
T ss_pred cccc--hHHHHHHHhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHH--------HHHhCCE
Confidence 9752 12222333455555699999999999999999999999999998754 2999998 6899999
Q ss_pred EEeCC-cccccCCCCCC--------CCC-HhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChhhh
Q 006959 557 YALDG-VWALSGLGHDY--------GLN-IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLL 617 (624)
Q Consensus 557 ~~Ld~-~WN~~~lg~~~--------~~~-~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl 617 (624)
++||. +||+++ |+.. ... ....++|+||||+|..|||+..+.++|+++||+|++...++|
T Consensus 206 ~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 206 YPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp EEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred EECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 99999 999985 3321 111 235678999999999999999999999999999999998887
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=4.9e-41 Score=348.35 Aligned_cols=246 Identities=20% Similarity=0.250 Sum_probs=187.5
Q ss_pred eEEEE-EeCCCcc-cccchhhc-ccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHH
Q 006959 327 HHYVI-FSTNVLA-SSVVINST-VLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 403 (624)
Q Consensus 327 iHIa~-~sDNvLa-asVvI~Si-l~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~ 403 (624)
||||+ +++||+. +.|+|+|+ +.|+. .+++|||++++++.+..+..-..-.-.+..++++.++.-.
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~---------- 68 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPED---------- 68 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGG----------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHH----------
Confidence 69999 5556775 67999999 88874 4799999999999887655322211124567777664211
Q ss_pred hhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccc
Q 006959 404 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 483 (624)
Q Consensus 404 ~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~ 483 (624)
| . ..|.. ..++|..+|+||++|++||+++||||||+|+||++||++||++||+|+++|||+||.
T Consensus 69 -------~----~--~~~~~---~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~ 132 (311)
T 1g9r_A 69 -------F----A--GFPLN---IRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLF 132 (311)
T ss_dssp -------G----T--TSCCC---CTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHH
T ss_pred -------H----h--cCccc---cccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccc
Confidence 0 0 11211 257788999999999999999999999999999999999999999999999999986
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccC-----CcccccccccccccccccCceEE
Q 006959 484 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-----GEESKEAVALRGSLLTFQDLVYA 558 (624)
Q Consensus 484 ~~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~-----DQdlLN~gtLPp~li~F~~~i~~ 558 (624)
... ...+....++++..+||||||||||+++||+.++++++++|+++... ||+++| .+|.++++.
T Consensus 133 ~~~--~~~~~~~~~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN--------~~f~~~~~~ 202 (311)
T 1g9r_A 133 VER--QEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILN--------GLFKGGVCY 202 (311)
T ss_dssp HHT--STTHHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHH--------HHHTTSEEE
T ss_pred hhh--hHHHHHhcCCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHH--------HHHcCCEEE
Confidence 421 11222234565667899999999999999999999999999987532 999998 689999999
Q ss_pred eCCcccccCCCCCC------CC---C-----HhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHH
Q 006959 559 LDGVWALSGLGHDY------GL---N-----IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFL 610 (624)
Q Consensus 559 Ld~~WN~~~lg~~~------~~---~-----~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl 610 (624)
||.+||++..++.. +. . .+..++++||||+|+.|||...+.+++.++|.+|.
T Consensus 203 Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~ 268 (311)
T 1g9r_A 203 ANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268 (311)
T ss_dssp ECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHH
T ss_pred cChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHH
Confidence 99999998532110 00 0 11235789999999999999988888877776655
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.92 E-value=2.5e-25 Score=233.93 Aligned_cols=223 Identities=14% Similarity=0.126 Sum_probs=150.1
Q ss_pred ceEEEEE-eCCCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHH
Q 006959 326 LHHYVIF-STNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 403 (624)
Q Consensus 326 ~iHIa~~-sDNvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~ 403 (624)
..+|+++ +|||+. +.|++.|+..|+++ ..++| +++++++.+..+.+... . ..++.++...... ...+.
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~---~---~~v~~v~~l~~~~--~~~~~ 73 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIV---F---DEVITVDILDSGD--SAHLT 73 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH---C---SEEEECCTTSTTS--TTHHH
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHh---C---CEEEEEeecCCcc--hhhcc
Confidence 4567775 556776 56899999999864 34555 66778887765543211 1 1344443211000 00000
Q ss_pred hhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccc
Q 006959 404 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 483 (624)
Q Consensus 404 ~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~ 483 (624)
. ..|+ + +..+|+||+++++ ++++||||||+|+||.+||++||+++ .+|||+|++
T Consensus 74 ~-------------------~~~~-~-~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~ 127 (333)
T 1ll2_A 74 L-------------------MKRP-E-LGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPG 127 (333)
T ss_dssp H-------------------HHCG-G-GHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSS
T ss_pred c-------------------cccc-c-hHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeEEecCC
Confidence 0 0011 1 3578999999996 78999999999999999999999987 478888753
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc----CCcccccccccccccccccCce---
Q 006959 484 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS----MGEESKEAVALRGSLLTFQDLV--- 556 (624)
Q Consensus 484 ~~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~----~DQdlLN~gtLPp~li~F~~~i--- 556 (624)
+ .+||||||||||++ .++.+++++++++.. .||++|| .+|.+.+
T Consensus 128 --------------~---~~~fNsGvmlin~~----~~~~~~l~~~~~~~~~~~~~DQ~~LN--------~~f~~~~~~~ 178 (333)
T 1ll2_A 128 --------------W---PDCFNSGVFVYQPS----VETYNQLLHVASEQGSFDGGDQGLLN--------TFFNSWATTD 178 (333)
T ss_dssp --------------S---TTSEEEEEEEECCC----HHHHHHHHHHHHHTCCTTSSHHHHHH--------HHTTTTTTSC
T ss_pred --------------C---CcceeeeEEEEeCC----HHHHHHHHHHHHhcCCCCCCCHHHHH--------HHHHhhcccC
Confidence 1 25999999999886 345566777766533 2999998 4777543
Q ss_pred --EEeCCcccccCCC-CCCCCC-HhhhcCCeEEEccCCCCCcccCCcc-----------------hhHHHHHHHHhhC
Q 006959 557 --YALDGVWALSGLG-HDYGLN-IEAIKKAAVLHYNGNMKPWLELGIP-----------------RYKKFWKKFLNQE 613 (624)
Q Consensus 557 --~~Ld~~WN~~~lg-~~~~~~-~~~i~~~~IIHY~G~~KPW~~~~~~-----------------~y~~lW~kYl~~s 613 (624)
..||.+||++... |..... ....++++||||+|..|||...+.+ .+.+.||.+++..
T Consensus 179 ~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~ 256 (333)
T 1ll2_A 179 IRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTS 256 (333)
T ss_dssp GGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHT
T ss_pred ccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHHHHHhh
Confidence 7899999998532 211000 1245789999999999999876321 5678899998753
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.89 E-value=5.6e-24 Score=217.39 Aligned_cols=215 Identities=18% Similarity=0.174 Sum_probs=145.5
Q ss_pred eCCCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhhccccch
Q 006959 333 STNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEY 411 (624)
Q Consensus 333 sDNvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~~l~~~~ef 411 (624)
+|+|+. +.|++.|+..+++.- .+++ ++|++++.+..+..- . . ..+++.++..... +...+..+
T Consensus 13 d~~Yl~ga~vL~~SL~~~~s~~-~lvv-Lvt~~vs~~~~~~L~--~-~---~~~vi~V~~l~~~--~~~~~~~~------ 76 (263)
T 3u2u_A 13 NDAYAKGALVLGSSLKQHRTTR-RLVV-LATPQVSDSMRKVLE--T-V---FDEVIMVDVLDSG--DSAHLTLM------ 76 (263)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCS-EEEE-EECTTSCHHHHHHHH--H-H---SSEEEECCCCCCC--CHHHHHHT------
T ss_pred CHHHHHHHHHHHHHHHHhCCCC-CEEE-EecCCCCHHHHHHHH--H-c---CCeEEEeeecCCc--chhhhhhh------
Confidence 455776 568999999987642 3333 567788776655421 1 1 1234444322210 00001000
Q ss_pred hhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccchhhhhh
Q 006959 412 RVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKS 491 (624)
Q Consensus 412 ~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~~~~~~~ 491 (624)
. |+.+ ..+|.|++++++.+ ++||||||+|++|.+||++||+++ .+|||.|.+
T Consensus 77 -------~------rp~~--~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~-------- 128 (263)
T 3u2u_A 77 -------K------RPEL--GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG-------- 128 (263)
T ss_dssp -------T------CTTG--GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT--------
T ss_pred -------c------Ccch--hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEeccCC--------
Confidence 1 1222 35789999999874 899999999999999999999987 478888753
Q ss_pred hhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc----CCcccccccccccccccccC-----ceEEeCCc
Q 006959 492 YLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS----MGEESKEAVALRGSLLTFQD-----LVYALDGV 562 (624)
Q Consensus 492 yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~----~DQdlLN~gtLPp~li~F~~-----~i~~Ld~~ 562 (624)
+ ..||||||||||++ .++.+++++++++.. .||++|| .+|.+ .++.||..
T Consensus 129 ------~---~~~fNsGv~li~p~----~~~~~~l~~~~~~~~~~~~~DQd~LN--------~~f~~w~~~~~~~~Lp~~ 187 (263)
T 3u2u_A 129 ------W---PDCFNSGVFVYQPS----VETYNQLLHLASEQGSFDGGDQGILN--------TFFSSWATTDIRKHLPFI 187 (263)
T ss_dssp ------S---TTSEEEEEEEECCC----HHHHHHHHHHHHHHCCTTSSHHHHHH--------HHTTTTTTSCGGGBCCGG
T ss_pred ------C---CccccCeEEEEccc----HHHHHHHHHHHHhcCCCCcccHHHHH--------HHhccccccCeeEeCCcc
Confidence 1 25999999999986 467777777776643 2999999 57876 78999999
Q ss_pred ccccCC-CCCCCCC-HhhhcCCeEEEccCCCCCcccCCc-----------------chhHHHHHHHHhh
Q 006959 563 WALSGL-GHDYGLN-IEAIKKAAVLHYNGNMKPWLELGI-----------------PRYKKFWKKFLNQ 612 (624)
Q Consensus 563 WN~~~l-g~~~~~~-~~~i~~~~IIHY~G~~KPW~~~~~-----------------~~y~~lW~kYl~~ 612 (624)
||++.. .|.+... .+..++++||||+|..|||...+. ..+-..||..+..
T Consensus 188 yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~ 256 (263)
T 3u2u_A 188 YNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTT 256 (263)
T ss_dssp GSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHHH
T ss_pred cccccchhccccHHHHhhcCCeEEEEECCCCcCCCCCCCCCCCcccccCCCcchhHHHHHHHHHHHHHh
Confidence 999742 2221100 123578999999999999987421 3667889987754
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=60.60 E-value=46 Score=34.26 Aligned_cols=115 Identities=9% Similarity=0.074 Sum_probs=68.6
Q ss_pred hhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeecccccch--hh--hhhhhc---cCCCCCCCCccccceEEE
Q 006959 440 LPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSL--GQ--LKSYLG---ENSYDKNSCAWMSGLNIV 512 (624)
Q Consensus 440 IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~~~--~~--~~~yl~---~~~f~~~~~yfNSGVlLi 512 (624)
..+++.++|-+.++|+|+++++++..= .| |..+|...--.-.. .. |.+.-. -..++....|+.+|++==
T Consensus 132 ~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYERrp~S~AyIp~~eGdfYY~Ga~fGG 207 (289)
T 1o7q_A 132 VAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYERRKESAAYIPFGEGDFYYHAAIFGG 207 (289)
T ss_dssp HHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCCCCTTSTTCCCTTCCSCCEEEEEEEE
T ss_pred HHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCCCCCCCCCCCcCceeeecCCCCCEEEEceeeCC
Confidence 355677899999999999999998542 23 45666654322100 00 111000 123567788999888754
Q ss_pred echhHhhHhHHHHHHHHHHH-c-c------CCcccccccccccccccccCceEEeCCccccc
Q 006959 513 DLARWRELDLTKTYQRLVRE-V-S------MGEESKEAVALRGSLLTFQDLVYALDGVWALS 566 (624)
Q Consensus 513 NL~kWR~~nitek~~~~l~~-~-~------~DQdlLN~gtLPp~li~F~~~i~~Ld~~WN~~ 566 (624)
-.++-.+ +++.|++-+.. . + .|..=||. .++....++.|++.|++.
T Consensus 208 t~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNK------Yf~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 208 TPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNK------YFLLNKPTKILSPEYCWD 261 (289)
T ss_dssp CHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHH------HHHHSCCSEEECGGGSBC
T ss_pred cHHHHHH--HHHHHHHHHHHHHhCCeEEEecchhhhhH------HHhhcCCCEEECHHHCCC
Confidence 4444333 66666665543 1 1 26666773 234456678899998875
No 6
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=48.83 E-value=23 Score=27.20 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=32.3
Q ss_pred hhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHh
Q 006959 182 LKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 220 (624)
Q Consensus 182 ~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l 220 (624)
|..|+++.++|. .-|+..+.-.=+.=|..|++|+++-+
T Consensus 6 L~EQ~~~I~~~I-~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFI-HQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 789999999998 67887888777888999999997644
No 7
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=47.39 E-value=65 Score=31.60 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCCCCCccceeeccceeeeeccccccchhHHHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCC
Q 006959 148 GGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDV 227 (624)
Q Consensus 148 ~~~~~~~~~~~~~g~y~~w~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~~~d~ 227 (624)
+..+.++.|...+++. .+++ + ..-.|........|++.||.+|.++
T Consensus 119 NvvD~p~~~~f~~Pai--v~rg------~---------------l~iaIST~G~sP~la~~iR~~ie~~----------- 164 (223)
T 3dfz_A 119 NMASSFSDGNIQIPAQ--FSRG------R---------------LSLAISTDGASPLLTKRIKEDLSSN----------- 164 (223)
T ss_dssp EC-----CCSEECCEE--EEET------T---------------EEEEEECTTSCHHHHHHHHHHHHHH-----------
T ss_pred EEeCCcccCeEEEeeE--EEeC------C---------------EEEEEECCCCCcHHHHHHHHHHHHH-----------
Confidence 4566788899988875 2322 1 1113444455699999999999987
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHhh
Q 006959 228 DLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEAN-FHMKQSAFLYQLAV 287 (624)
Q Consensus 228 ~l~~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~-~~~~q~~~l~~laa 287 (624)
||++..+.++.|...-.+.|+...+-. .|-+-+-...++..- ...+|..|+..|..
T Consensus 165 -lp~~~~~~~~~~~~~R~~vk~~~~~~~---~Rr~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (223)
T 3dfz_A 165 -YDESYTQYTQFLYECRVLIHRLNVSKS---RKHELLTEIIDDQYRLSLVKQREFLQQIEK 221 (223)
T ss_dssp -SCTHHHHHHHHHHHHHHHHHHCCSCHH---HHHHHHHHTCSHHHHHCHHHHHHHHHHHHC
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHhcchhhcChHHHHHHHHHHHh
Confidence 899999999999999999998776533 333333333444443 66888899888754
No 8
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=37.92 E-value=1.1e+02 Score=31.92 Aligned_cols=40 Identities=28% Similarity=0.550 Sum_probs=32.7
Q ss_pred cchHHHHHHhhhhhhhc--ccCeEEEEecCeeeccCchHHHc
Q 006959 429 YISVFSHLHYLLPEIFQ--SLTKVVVLDDDVVVQKDLSALWD 468 (624)
Q Consensus 429 ylS~lny~Rf~IPeLlP--~ldKVLYLD~DvVV~~DLseLw~ 468 (624)
|..+..|++--+-.+|. ..++||+||+|+++-.|.-+.++
T Consensus 80 y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred chhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 55667788888888887 78999999999999999765544
No 9
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=34.71 E-value=41 Score=26.06 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=32.2
Q ss_pred HhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHh
Q 006959 181 KLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 220 (624)
Q Consensus 181 ~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l 220 (624)
=|..|+++.++|. .-||..+.-.=+.=|..|++|+++-+
T Consensus 6 PL~EQ~~~I~~~I-~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 6 PLLQQIHNITSFI-RQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3788999999998 68888888777788888998887544
No 10
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=33.55 E-value=16 Score=25.66 Aligned_cols=8 Identities=100% Similarity=2.195 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 006959 3 GGGGGGGG 10 (624)
Q Consensus 3 ~~~~~~~~ 10 (624)
||||||||
T Consensus 13 gggggggg 20 (37)
T 2i9o_A 13 GGGGGGGG 20 (37)
T ss_dssp CSCCCCSC
T ss_pred cCCCCCcc
Confidence 44444444
No 11
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=33.17 E-value=41 Score=27.60 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=33.6
Q ss_pred HhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhh
Q 006959 181 KLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLS 221 (624)
Q Consensus 181 ~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~ 221 (624)
=|.+|+++.++|. .-||..+...=+.=|..|++|+++-+.
T Consensus 24 PL~EQ~~~I~~yI-~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 24 PLLQQIHNITSFI-RQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 5789999999998 788888887778889999999876543
No 12
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=30.70 E-value=50 Score=26.36 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=33.1
Q ss_pred HhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhh
Q 006959 181 KLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLS 221 (624)
Q Consensus 181 ~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~ 221 (624)
-|..|+++.++|. .-||..+...=+.=|..|++|++.-+.
T Consensus 13 pL~EQi~~I~~yI-~qAk~~~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 13 LLLQQIDNIKAYI-FDAKQCGRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHH-HHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 5789999999998 688888887777888899998876543
No 13
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=30.68 E-value=16 Score=28.32 Aligned_cols=8 Identities=100% Similarity=2.195 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 006959 3 GGGGGGGG 10 (624)
Q Consensus 3 ~~~~~~~~ 10 (624)
||||||||
T Consensus 28 gggggggg 35 (62)
T 2i7u_A 28 GGGGGGGG 35 (62)
T ss_dssp CSSCSSSC
T ss_pred cCCCCchH
Confidence 44444444
No 14
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=28.96 E-value=34 Score=24.69 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 006959 28 GVLFLVILSMLVPLAFLLGL 47 (624)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ 47 (624)
|.+| +++.++||-+||+.|
T Consensus 7 ~fiA-t~Lfi~iPt~FLlil 25 (36)
T 3arc_M 7 GLIA-TALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 3344 346678999999986
No 15
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=27.99 E-value=51 Score=23.47 Aligned_cols=18 Identities=28% Similarity=0.491 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 006959 29 VLFLVILSMLVPLAFLLG 46 (624)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~ 46 (624)
++.||+..++|||++..-
T Consensus 12 l~LLviV~LgV~LI~f~~ 29 (35)
T 2lk9_A 12 LVLLIIVILGVPLIIFTI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcchheEEee
Confidence 445677789999988643
No 16
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.91 E-value=1.2e+02 Score=26.80 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHH
Q 006959 256 NVDKKFRQILDMTND 270 (624)
Q Consensus 256 ~~~~kl~~~~~~~e~ 270 (624)
.+.+|..++|.+|||
T Consensus 87 ~~~~kIq~ILYaTee 101 (106)
T 4e61_A 87 RFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc
Confidence 456777777777776
Done!