Query 006960
Match_columns 623
No_of_seqs 83 out of 85
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:30:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.6 0.00042 1.4E-08 63.8 35.8 27 525-551 249-275 (284)
2 1c1g_A Tropomyosin; contractIl 98.2 0.0046 1.6E-07 56.8 38.0 18 386-403 263-280 (284)
3 1i84_S Smooth muscle myosin he 98.1 9.6E-06 3.3E-10 95.1 12.0 13 464-476 1148-1160(1184)
4 1i84_S Smooth muscle myosin he 98.0 1.5E-05 5.1E-10 93.4 10.3 25 388-412 1032-1056(1184)
5 3na7_A HP0958; flagellar bioge 95.5 0.37 1.3E-05 47.5 15.8 18 460-477 90-107 (256)
6 3vkg_A Dynein heavy chain, cyt 95.1 4.6 0.00016 52.9 27.5 183 76-273 1906-2098(3245)
7 2ocy_A RAB guanine nucleotide 94.5 1.1 3.9E-05 42.3 15.2 76 384-481 75-150 (154)
8 2v71_A Nuclear distribution pr 94.4 3.7 0.00013 40.0 18.8 146 324-517 10-155 (189)
9 3vkg_A Dynein heavy chain, cyt 92.6 14 0.00047 48.7 24.8 162 69-245 1910-2084(3245)
10 3na7_A HP0958; flagellar bioge 91.6 11 0.00038 37.0 20.7 15 329-343 95-109 (256)
11 2v71_A Nuclear distribution pr 88.7 13 0.00043 36.3 15.2 51 401-457 129-179 (189)
12 2e7s_A RAB guanine nucleotide 87.7 2.1 7.1E-05 39.9 8.6 71 384-476 63-133 (135)
13 3mq7_A Bone marrow stromal ant 87.6 12 0.00042 34.2 13.3 72 213-294 14-85 (121)
14 2dfs_A Myosin-5A; myosin-V, in 85.3 12 0.0004 44.4 15.3 20 391-410 924-943 (1080)
15 3oja_B Anopheles plasmodium-re 84.8 3.5 0.00012 43.9 9.9 49 436-484 534-582 (597)
16 2dfs_A Myosin-5A; myosin-V, in 84.7 22 0.00074 42.2 17.2 28 328-355 1020-1047(1080)
17 2eqb_B RAB guanine nucleotide 83.4 4.7 0.00016 35.7 8.4 23 384-406 43-65 (97)
18 3oja_B Anopheles plasmodium-re 82.8 17 0.00058 38.6 14.1 128 437-564 454-581 (597)
19 2ocy_A RAB guanine nucleotide 81.2 37 0.0013 32.1 15.0 129 382-547 14-142 (154)
20 1wt6_A Myotonin-protein kinase 80.3 2.5 8.6E-05 36.4 5.3 52 510-563 28-79 (81)
21 3mq9_A Bone marrow stromal ant 75.9 37 0.0012 35.3 13.7 62 232-293 391-456 (471)
22 3ol1_A Vimentin; structural ge 75.5 19 0.00067 32.0 10.0 68 385-475 38-105 (119)
23 2efr_A General control protein 74.7 58 0.002 30.7 17.5 128 386-547 26-153 (155)
24 2v66_B Nuclear distribution pr 74.1 24 0.00082 31.8 10.1 88 381-477 3-101 (111)
25 2eqb_B RAB guanine nucleotide 72.5 22 0.00075 31.5 9.2 66 76-141 5-70 (97)
26 3nmd_A CGMP dependent protein 69.9 9.1 0.00031 32.3 6.0 48 434-481 21-68 (72)
27 2i1j_A Moesin; FERM, coiled-co 67.8 5.8 0.0002 43.7 5.7 134 335-470 384-547 (575)
28 3tnu_B Keratin, type II cytosk 66.4 20 0.0007 32.0 8.0 80 388-472 29-108 (129)
29 1x79_B RAB GTPase binding effe 65.6 78 0.0027 28.6 11.8 79 73-151 3-89 (112)
30 2fxo_A Myosin heavy chain, car 65.1 77 0.0026 28.3 15.9 112 438-560 12-123 (129)
31 3hnw_A Uncharacterized protein 64.5 22 0.00075 32.7 8.0 20 386-405 80-99 (138)
32 3ni0_A Bone marrow stromal ant 63.6 75 0.0026 28.2 10.7 77 213-296 7-83 (99)
33 2fxo_A Myosin heavy chain, car 62.9 85 0.0029 28.1 15.3 29 384-412 100-128 (129)
34 3tnu_A Keratin, type I cytoske 62.0 19 0.00064 32.4 6.9 80 388-472 31-110 (131)
35 3ryc_E Stathmin-4; alpha-tubul 61.7 1.1E+02 0.0037 28.8 12.6 32 52-83 26-57 (143)
36 2efr_A General control protein 60.6 1.1E+02 0.0039 28.8 14.6 122 336-477 26-150 (155)
37 2i7u_A Four-alpha-helix bundle 60.4 5.3 0.00018 32.0 2.6 21 550-570 12-32 (62)
38 3hnw_A Uncharacterized protein 59.7 59 0.002 29.9 9.9 41 437-477 80-120 (138)
39 3tnu_A Keratin, type I cytoske 57.4 1E+02 0.0034 27.6 10.9 91 439-543 31-121 (131)
40 3u1c_A Tropomyosin alpha-1 cha 57.4 95 0.0033 26.9 12.1 78 248-355 5-82 (101)
41 3o0z_A RHO-associated protein 57.0 1.4E+02 0.0048 28.7 19.9 23 329-351 95-117 (168)
42 3swk_A Vimentin; cytoskeleton, 56.9 21 0.00073 30.3 6.0 66 386-474 19-84 (86)
43 3mq7_A Bone marrow stromal ant 56.8 54 0.0018 30.0 8.9 39 440-478 72-110 (121)
44 3a7p_A Autophagy protein 16; c 56.6 27 0.00091 33.1 7.1 66 384-458 71-136 (152)
45 3a7p_A Autophagy protein 16; c 54.0 1.2E+02 0.0041 28.7 11.1 45 433-477 69-113 (152)
46 2yy0_A C-MYC-binding protein; 53.9 17 0.00057 28.7 4.5 35 446-480 19-53 (53)
47 3tnu_B Keratin, type II cytosk 53.5 1.2E+02 0.0042 26.9 12.2 91 439-543 29-119 (129)
48 3u1c_A Tropomyosin alpha-1 cha 51.1 1.2E+02 0.0042 26.2 12.6 41 506-546 51-91 (101)
49 2e7s_A RAB guanine nucleotide 50.7 57 0.0019 30.3 8.2 27 204-230 104-130 (135)
50 1ic2_A Tropomyosin alpha chain 43.6 1.4E+02 0.0047 24.7 9.9 43 253-295 7-49 (81)
51 3oja_A Leucine-rich immune mol 43.6 2.7E+02 0.0094 28.9 13.2 44 451-505 433-476 (487)
52 1ic2_A Tropomyosin alpha chain 41.6 1.5E+02 0.0051 24.5 10.5 32 505-536 47-78 (81)
53 3u59_A Tropomyosin beta chain; 39.3 1.8E+02 0.0062 24.9 12.6 42 505-546 50-91 (101)
54 3efg_A Protein SLYX homolog; x 38.5 51 0.0017 27.7 5.4 50 69-125 14-63 (78)
55 4f61_I Stathmin-like domain R4 38.4 3.3E+02 0.011 27.5 14.6 55 54-108 27-86 (240)
56 2xnx_M M protein, M1-BC1; cell 37.7 1E+02 0.0035 29.1 7.8 23 521-543 116-138 (146)
57 1l8d_A DNA double-strand break 37.7 1.2E+02 0.0041 25.8 7.8 30 436-465 68-97 (112)
58 3i00_A HIP-I, huntingtin-inter 36.1 1.1E+02 0.0038 27.6 7.6 38 441-478 42-79 (120)
59 3trt_A Vimentin; cytoskeleton, 35.2 1.7E+02 0.006 23.5 8.9 42 144-185 25-66 (77)
60 1l8d_A DNA double-strand break 31.7 2.4E+02 0.0081 23.9 10.5 29 326-354 66-94 (112)
61 3o0z_A RHO-associated protein 31.6 3.5E+02 0.012 25.9 18.1 78 219-296 29-106 (168)
62 2k48_A Nucleoprotein; viral pr 30.8 1.4E+02 0.0049 26.8 7.2 32 76-114 35-66 (107)
63 3ghg_A Fibrinogen alpha chain; 30.6 4.8E+02 0.016 29.2 12.8 53 178-230 92-144 (562)
64 1go4_E MAD1 (mitotic arrest de 30.5 1.6E+02 0.0056 26.0 7.5 21 328-348 72-92 (100)
65 2i1j_A Moesin; FERM, coiled-co 28.9 89 0.003 34.5 6.9 49 502-550 415-463 (575)
66 3q8t_A Beclin-1; autophagy, AT 27.4 3E+02 0.01 23.7 9.9 33 446-478 60-92 (96)
67 2f1m_A Acriflavine resistance 27.2 2.3E+02 0.0077 27.0 8.7 25 72-96 56-80 (277)
68 2jee_A YIIU; FTSZ, septum, coi 27.0 2.6E+02 0.0088 24.0 7.9 60 499-558 13-72 (81)
69 2jee_A YIIU; FTSZ, septum, coi 26.3 3.1E+02 0.011 23.5 8.7 57 238-294 6-62 (81)
70 4dk0_A Putative MACA; alpha-ha 26.1 2E+02 0.0067 28.5 8.3 24 72-95 66-89 (369)
71 3swk_A Vimentin; cytoskeleton, 26.0 3E+02 0.01 23.2 10.2 14 176-189 1-14 (86)
72 3ghg_A Fibrinogen alpha chain; 25.5 4E+02 0.014 29.8 11.0 34 214-247 61-94 (562)
73 1gk4_A Vimentin; intermediate 25.4 1.2E+02 0.0042 25.3 5.6 30 332-361 2-31 (84)
74 3oja_A Leucine-rich immune mol 25.3 4.7E+02 0.016 27.1 11.3 35 442-476 452-486 (487)
75 3s4r_A Vimentin; alpha-helix, 25.3 2.8E+02 0.0096 23.7 8.0 15 412-426 26-40 (93)
76 3ol1_A Vimentin; structural ge 24.5 3.7E+02 0.013 23.8 12.6 38 175-212 20-57 (119)
77 3cvf_A Homer-3, homer protein 23.9 2E+02 0.0068 24.5 6.6 38 262-299 2-39 (79)
78 1x79_B RAB GTPase binding effe 23.9 2.7E+02 0.0093 25.1 7.9 68 386-472 36-103 (112)
79 3fpp_A Macrolide-specific effl 23.6 3.8E+02 0.013 26.2 9.7 80 72-151 65-147 (341)
80 2ic6_A Nucleocapsid protein; h 23.2 2E+02 0.007 24.5 6.5 29 78-113 7-35 (78)
81 2w83_C C-JUN-amino-terminal ki 23.1 3.5E+02 0.012 23.1 8.6 16 458-473 7-22 (77)
82 1ci6_A Transcription factor AT 22.9 1.4E+02 0.0048 23.8 5.3 36 434-476 25-60 (63)
83 3m91_A Proteasome-associated A 22.9 2.7E+02 0.0091 21.9 6.7 23 100-122 26-48 (51)
84 2no2_A HIP-I, huntingtin-inter 20.9 4.3E+02 0.015 23.2 12.1 91 199-290 11-106 (107)
85 1cxz_B Protein (PKN); protein- 20.1 3.6E+02 0.012 23.3 7.6 46 360-406 35-81 (86)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.58 E-value=0.00042 Score=63.77 Aligned_cols=27 Identities=4% Similarity=0.191 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhchH
Q 006960 525 MAEQLEAAQSANCEAEAELRRLKVQSD 551 (623)
Q Consensus 525 ~~EqL~aaq~a~~elEaElrrLrVQse 551 (623)
+..++...+..-..++..+.+++++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
T 1c1g_A 249 LEKSIDDLEDELYAQKLKYKAISEELD 275 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.15 E-value=0.0046 Score=56.83 Aligned_cols=18 Identities=0% Similarity=0.139 Sum_probs=7.6
Q ss_pred HHHHHHhhhhhHHHHHHh
Q 006960 386 LEAELQKAKSDIEELKAN 403 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~ 403 (623)
+...+.++...+..+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~ 280 (284)
T 1c1g_A 263 QKLKYKAISEELDHALND 280 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.12 E-value=9.6e-06 Score=95.05 Aligned_cols=13 Identities=54% Similarity=0.682 Sum_probs=0.0
Q ss_pred hHHHhhHHHHHHh
Q 006960 464 NISEENEMLKLEI 476 (623)
Q Consensus 464 ~~~~ene~Lk~e~ 476 (623)
.+..+.+.|+.+|
T Consensus 1148 ~L~~ele~L~~~I 1160 (1184)
T 1i84_S 1148 DLSEELEALKTEL 1160 (1184)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.99 E-value=1.5e-05 Score=93.43 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHhhcchhhhhh
Q 006960 388 AELQKAKSDIEELKANLMDKETELQ 412 (623)
Q Consensus 388 aELKk~ksdIeELKA~LMDKEtELQ 412 (623)
.++.++...+.+|...+-..+..++
T Consensus 1032 k~~~~le~el~ele~~le~~e~~~~ 1056 (1184)
T 1i84_S 1032 KLKNKHESMISELEVRLKKEEKSRQ 1056 (1184)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.52 E-value=0.37 Score=47.52 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=10.2
Q ss_pred HHHhhHHHhhHHHHHHhc
Q 006960 460 TELQNISEENEMLKLEIS 477 (623)
Q Consensus 460 ~elq~~~~ene~Lk~e~~ 477 (623)
.+++.+..|.+.++..+.
T Consensus 90 kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSN 107 (256)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555556666655554
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.11 E-value=4.6 Score=52.90 Aligned_cols=183 Identities=10% Similarity=0.106 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHhhHHH
Q 006960 76 SQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSE 155 (623)
Q Consensus 76 sql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~wqsE 155 (623)
.-+.+-+.++...++.| ..-.++|.++..|+.++..+|.+.|.++.+-+..=..-+.+|.+-.+ +
T Consensus 1906 ~ll~~K~~el~~~~~rl-------~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~--------~ 1970 (3245)
T 3vkg_A 1906 LLINEKRDQLEEEQLHL-------NIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ--------A 1970 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 33444445555555555 55566677777777777777777666666655433334444433221 1
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHHHHH----H------HHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 006960 156 LQAIQNQHSIDSAALASALNELQQLKAQFEM----V------AESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQ 225 (623)
Q Consensus 156 leavq~qhs~DsaaL~sal~Eiq~LK~qL~~----~------~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~ 225 (623)
.+..+..-..+-+.+.....+|+..|.+.+. + .+.-+.+......++.+|...+..|.+--.-|..|+.+
T Consensus 1971 ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~ 2050 (3245)
T 3vkg_A 1971 AEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEE 2050 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111222222333333332210 0 01111222333445555666666665555555666666
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHH
Q 006960 226 LRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIAS 273 (623)
Q Consensus 226 l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~ 273 (623)
..+.-.-......-++.+..+|+.|..=|..|-.+-.+=.+.+..+..
T Consensus 2051 ~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2051 YATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 555543334444445667777777777777777766666655444443
No 7
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.52 E-value=1.1 Score=42.31 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006960 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
.+.+.++.+...+|++|=|+||| +.|+|--.. ..+-..+..-+..|+..|.|++.-|.
T Consensus 75 ~~aE~~~~~ie~ElEeLTasLFe---------EAN~MVa~a-------------r~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASLFD---------EANNMVADA-------------RKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999995 445543321 22334455677889999999999999
Q ss_pred hHHHhhHHHHHHhchhhc
Q 006960 464 NISEENEMLKLEISKREL 481 (623)
Q Consensus 464 ~~~~ene~Lk~e~~k~e~ 481 (623)
++..+-..||.-+.+.+.
T Consensus 133 ~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 133 TLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999988875543
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.38 E-value=3.7 Score=39.95 Aligned_cols=146 Identities=22% Similarity=0.209 Sum_probs=77.4
Q ss_pred hhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHh
Q 006960 324 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 403 (623)
Q Consensus 324 ~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~ 403 (623)
.++..+...+...+..+.+|+..|. |+..+ |..=|.||+.+|..+...+-.|+..
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~--------EFqes-----------------SrELE~ELE~eL~~~Ek~~~~L~~~ 64 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELV--------EFQEG-----------------SRELEAELEAQLVQAEQRNRDLQAD 64 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665 22223 3444577777777777777777766
Q ss_pred hcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccC
Q 006960 404 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDT 483 (623)
Q Consensus 404 LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~ 483 (623)
+.--..+++.+-..+...+.+. ......|..+|..+......|+. .|..+...|-.|-...-
T Consensus 65 ~~~L~~E~e~~k~K~~~~~~e~-----~~~~~~Lq~el~~l~~~~~~l~~-------~ireLEq~NDdlEr~~R------ 126 (189)
T 2v71_A 65 NQRLKYEVEALKEKLEHQYAQS-----YKQVSVLEDDLSQTRAIKEQLHK-------YVRELEQANDDLERAKR------ 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHH------
Confidence 6544444444333333222221 12234455555555555555555 44445555655544443
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006960 484 PNMNSNLAAEVEAARSAEKEALMKLGLLMEEADK 517 (623)
Q Consensus 484 ~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~ 517 (623)
-+.+.++--..+=..|+-+..+|..|++.
T Consensus 127 -----~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 127 -----ATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333444445556666667777763
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.63 E-value=14 Score=48.73 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=80.6
Q ss_pred CchhhhHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh----------hhhHH
Q 006960 69 SRISELESQVSRLQEDLKK---AKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQEL----------SASEE 135 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkk---aKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~----------Sa~e~ 135 (623)
.|..+++.+..+++-=|.| |.+|. ..++.+|.+-+.+|.+.+.+-++.=.+...+ ...++
T Consensus 1910 ~K~~el~~~~~rl~~GL~KL~et~~~V-------~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~ 1982 (3245)
T 3vkg_A 1910 EKRDQLEEEQLHLNIGLKKLRDTEAQV-------KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQ 1982 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777655544 45555 5566666666666665554443321111111 11122
Q ss_pred HHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHH
Q 006960 136 ARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIET 215 (623)
Q Consensus 136 sr~~Elqk~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laet 215 (623)
..+.+.....+.+-..++.+|..+.-. +=+ -.++..+..+|..+...-+..-......+..|+.++.+..+.
T Consensus 1983 ~~~~~~~~ei~~~k~~~e~dL~~A~Pa-----~Pk---r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 1983 VQLDVRNKEIAVQKVKAYADLEKAEPT-----GPL---REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC------------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-----ChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233333344445554443311 000 022223333333322222222233334445677788888888
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHHHHH
Q 006960 216 ISLMENMKNQLRESKESETQAQALARETLL 245 (623)
Q Consensus 216 l~lvE~lKs~l~e~keSeAqa~aL~~E~~~ 245 (623)
.+-.+.|+.++..|+.--.+|..|++.|-.
T Consensus 2055 ~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2055 IRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888888888888888777888888755544
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.55 E-value=11 Score=36.99 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=6.1
Q ss_pred HHHHHhhchhhHHHH
Q 006960 329 LEEELSSLKSEVGQL 343 (623)
Q Consensus 329 Le~EL~s~ksEIeeL 343 (623)
|.-|+..++.++..|
T Consensus 95 L~kEie~~~~~i~~l 109 (256)
T 3na7_A 95 LNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.72 E-value=13 Score=36.27 Aligned_cols=51 Identities=27% Similarity=0.314 Sum_probs=21.8
Q ss_pred HHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhh
Q 006960 401 KANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD 457 (623)
Q Consensus 401 KA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~d 457 (623)
-++|-|-|+.|-.+.|.|-.|.+++... ..|..++..+.+++.+||-.|..
T Consensus 129 ~~SleD~e~kln~aiEr~alLE~El~EK------e~l~~~~QRLkdE~rDLk~El~v 179 (189)
T 2v71_A 129 IMSLEDFEQRLNQAIERNAFLESELDEK------ESLLVSVQRLKDEARDLRQELAV 179 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCCC----------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777521 13444455555555555554433
No 12
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.71 E-value=2.1 Score=39.87 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006960 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
.+.+.++++...+|++|=|+||| +.|+|--.. ..+-..+...+..|++.|.|++.-|.
T Consensus 63 ~~aE~~~~~ie~ElE~LTasLFe---------EAN~MVa~a-------------r~~~~~~e~r~~~L~~ql~e~e~ll~ 120 (135)
T 2e7s_A 63 TKAEEEADKLNKEVEDLTASLFD---------EANNLVADA-------------RMEKYAIEILNKRLTEQLREKDMLLD 120 (135)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHH---------HHHHHHHHT-------------THHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999995 445543322 22234455677889999999999999
Q ss_pred hHHHhhHHHHHHh
Q 006960 464 NISEENEMLKLEI 476 (623)
Q Consensus 464 ~~~~ene~Lk~e~ 476 (623)
++......||.-|
T Consensus 121 ~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 121 TLTLQLKNLKKVM 133 (135)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 9988888887654
No 13
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.56 E-value=12 Score=34.19 Aligned_cols=72 Identities=21% Similarity=0.169 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 006960 213 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 292 (623)
Q Consensus 213 aetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskL 292 (623)
-+||++...++|.-.=++.-=.+|+..+-.+..|--+.+.||..|++...+-+. ++..+|++|++.|.+|
T Consensus 14 ~dGLrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~eka----------q~q~~vqeLqgEI~~L 83 (121)
T 3mq7_A 14 RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA----------QGQKKVEELEGEITTL 83 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 588999999999888888777899999999999999999999999887665542 2234677777766665
Q ss_pred hh
Q 006960 293 EA 294 (623)
Q Consensus 293 q~ 294 (623)
.-
T Consensus 84 nq 85 (121)
T 3mq7_A 84 NH 85 (121)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.31 E-value=12 Score=44.42 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHhhcchhhh
Q 006960 391 QKAKSDIEELKANLMDKETE 410 (623)
Q Consensus 391 Kk~ksdIeELKA~LMDKEtE 410 (623)
.++...|.+|...|-++|.+
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~ 943 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKE 943 (1080)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444433
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.82 E-value=3.5 Score=43.87 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=34.3
Q ss_pred hHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCC
Q 006960 436 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP 484 (623)
Q Consensus 436 el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~ 484 (623)
+...+++.++.++..|...+......++.+.+||..++.++++.+...+
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666777777777777777888888888888888876554433
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.69 E-value=22 Score=42.21 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=19.1
Q ss_pred hHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006960 328 HLEEELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 328 ~Le~EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
.|+..++.+..|...||..+++-|...+
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777777765444
No 17
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.43 E-value=4.7 Score=35.66 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcc
Q 006960 384 VELEAELQKAKSDIEELKANLMD 406 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMD 406 (623)
.+.+.+++++..+|++|=|+|||
T Consensus 43 ~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 43 TKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788999999999999995
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.82 E-value=17 Score=38.63 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=66.0
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006960 437 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEAD 516 (623)
Q Consensus 437 l~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~ 516 (623)
+..++..++..|..|++.+...+..++....+.+..+..+.....+.....+.....+...+........++-...++.+
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 33444455566666666666666666666666666555544322222222233333333333333333444444444444
Q ss_pred HhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHhh
Q 006960 517 KSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASML 564 (623)
Q Consensus 517 ~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa~L 564 (623)
+-......+..+.+..+..-.++..-+.+|+-+...|+.--..--..+
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555666666666666666665544444444
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.21 E-value=37 Score=32.08 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=73.5
Q ss_pred chHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHH
Q 006960 382 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE 461 (623)
Q Consensus 382 RE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~e 461 (623)
|.+.|+-+|-.+..+++..++.. ..|..+.++...|..+. .....++.++...+.+=++.-.+-|.+
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri----~~lE~~r~~~~~l~~~~---------~~~~~e~~~L~~~l~~E~~~R~~aE~~ 80 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAI----ENYNQLKEDYNTLKREL---------SDRDDEVKRLREDIAKENELRTKAEEE 80 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHTHH---------HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred hhccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777665532 23333333333332221 235566666666666666666777778
Q ss_pred HhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 006960 462 LQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEA 541 (623)
Q Consensus 462 lq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEa 541 (623)
...+..|.+.|--.+= +||.-.+..|+.+-..+- .|...+.+||.-.+.--.-+..
T Consensus 81 ~~~ie~ElEeLTasLF----------eEAN~MVa~ar~~~~~~e--------------~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 81 ADKLNKEVEDLTASLF----------DEANNMVADARKEKYAIE--------------ILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887755543 355555555543333333 3445555555555555555555
Q ss_pred HHhhhh
Q 006960 542 ELRRLK 547 (623)
Q Consensus 542 ElrrLr 547 (623)
.|..||
T Consensus 137 ql~~LK 142 (154)
T 2ocy_A 137 QLKNLK 142 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 565555
No 20
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=80.31 E-value=2.5 Score=36.36 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=33.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHh
Q 006960 510 LLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM 563 (623)
Q Consensus 510 ~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa~ 563 (623)
.|.||+.+-..---...-+|.-++.-|.+|.+||++|+.+.+..| ++.++||
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq--~~~~~~~ 79 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ--AEGATAV 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccchhhc
Confidence 355666322222222336899999999999999999999999977 5555555
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.87 E-value=37 Score=35.31 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHH----hhhHHHHHHHHHHHHhHHHHHHHHh
Q 006960 232 SETQAQALARETLLQLETAKLSVEALRAEGMKAIEAY----SSIASELERSRTRINLLEGLVSKLE 293 (623)
Q Consensus 232 SeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~----~sl~~eLe~S~~r~~~LE~lvskLq 293 (623)
.++++......+++||..++.+.-.+++-.+..-..+ .||..+.-|...|+++||..|.+|.
T Consensus 391 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (471)
T 3mq9_A 391 AVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLN 456 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666665555554433322211 1223333344456666666655554
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.53 E-value=19 Score=32.04 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhh
Q 006960 385 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN 464 (623)
Q Consensus 385 ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~ 464 (623)
-|..++.++...++++|.+.=+ | +..+ ..++.++..+..+|+..--.-.|.|+.+++
T Consensus 38 ~l~leldn~~~~~edfk~KyE~---E--------------~~~r------~~~E~di~~lrK~lD~~~l~r~dLE~~ies 94 (119)
T 3ol1_A 38 RVEVERDNLAEDIMRLREKLQE---E--------------MLQR------EEAENTLQSFRQDVDNASLARLDLERKVES 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---H--------------HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHH---H--------------HHHH------HHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 3555666666666666665421 1 1111 234567777777888877778899999999
Q ss_pred HHHhhHHHHHH
Q 006960 465 ISEENEMLKLE 475 (623)
Q Consensus 465 ~~~ene~Lk~e 475 (623)
+.+|..-||.-
T Consensus 95 L~eEl~FLKk~ 105 (119)
T 3ol1_A 95 LQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 23
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.75 E-value=58 Score=30.74 Aligned_cols=128 Identities=20% Similarity=0.308 Sum_probs=71.5
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhH
Q 006960 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI 465 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~ 465 (623)
++..|.++..-++..-+...+-|.+|+.+. |..=.+++.....++++..+..+++-+...+.+.-..-..-|..++.+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~--~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kL 103 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT--NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKL 103 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777666666667677777777765 333334555555677777777666665555544444444444444444
Q ss_pred HHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006960 466 SEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 545 (623)
Q Consensus 466 ~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrr 545 (623)
..++..|--.+. ..| .+...+.+++| ..--.|-.-++-+-.|+.|+-|
T Consensus 104 Ek~id~lEd~L~------------------~~K-------ek~~~i~~eLd-------~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 104 EKSIDDLEDELY------------------AQK-------LKYKAISEEMK-------QLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHH------------------HHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------------HHH-------HHHHHHHHHHH-------HHHHHHHhcccchHHHHHHHHH
Confidence 444444433332 222 23334445555 1222333346677788888877
Q ss_pred hh
Q 006960 546 LK 547 (623)
Q Consensus 546 Lr 547 (623)
|+
T Consensus 152 ~~ 153 (155)
T 2efr_A 152 LK 153 (155)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 24
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=74.13 E-value=24 Score=31.80 Aligned_cols=88 Identities=27% Similarity=0.337 Sum_probs=54.1
Q ss_pred cchHHHHHHHHhhhhhHHHHHHhhcchhh-----------hhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHH
Q 006960 381 LREVELEAELQKAKSDIEELKANLMDKET-----------ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVE 449 (623)
Q Consensus 381 qRE~ELeaELKk~ksdIeELKA~LMDKEt-----------ELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~ 449 (623)
.|+.+|.....++..+++++|..+..--+ +|..+-..|+.|...|.. |+..---++..--
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iRe---------LEq~NDDLER~~R 73 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE---------LEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhchHHHHHHH
Confidence 46778888888888899998888875543 333344444444444431 1111111111122
Q ss_pred HHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006960 450 DLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 450 ~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
..-.+|.|.|.-+-...+.|..|-.+|.
T Consensus 74 ~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 74 ATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888888888888776
No 25
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.49 E-value=22 Score=31.46 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 006960 76 SQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVEL 141 (623)
Q Consensus 76 sql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~El 141 (623)
..+..+++++..+..++...+....++..+|.+-+.+-..+-+.+....+-++++|+++-.-++.+
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M 70 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM 70 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777888999999888888888888888999999999987777663
No 26
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.94 E-value=9.1 Score=32.28 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=39.7
Q ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhc
Q 006960 434 ESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKREL 481 (623)
Q Consensus 434 e~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~ 481 (623)
-++|+..|.+.+++|...-+.+.++|.+|+..-.++..|++++.|+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 477888888888888888888888888888888888899999987754
No 27
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.84 E-value=5.8 Score=43.74 Aligned_cols=134 Identities=21% Similarity=0.300 Sum_probs=41.6
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHH---HHHHHHhhhhhHHHHHHhhcchhhhh
Q 006960 335 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVE---LEAELQKAKSDIEELKANLMDKETEL 411 (623)
Q Consensus 335 s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~E---LeaELKk~ksdIeELKA~LMDKEtEL 411 (623)
....+.++....|...=.+-.+|+.++--+|+-+-..+.++.-++..|+.| |..+|..+..+..+-|+.|++.=+.=
T Consensus 384 ~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~~~ 463 (575)
T 2i1j_A 384 QRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQ 463 (575)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHTTSCCG
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334444444445544433445777777777776667778888888888876 67777788888888787776522211
Q ss_pred h-hh------------hhhhh-------------hhhhhhhhhh-hhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhh
Q 006960 412 Q-GI------------SEENE-------------GLHMQLDKNL-MCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN 464 (623)
Q Consensus 412 Q-~I------------sEENE-------------~L~~ei~~~~-~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~ 464 (623)
+ .+ .++|. .++..++.+. ...+-.-|...|+.|..+|+.+| ..+|.|.+..
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~eR~~~~ekn~~lq~qL~~L~~el~~~r--~~~k~t~~D~ 541 (575)
T 2i1j_A 464 HHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSC--DETKETAMDK 541 (575)
T ss_dssp GGSCCCC---------------CEEEEECCCCCTTCCCGGGGCCCHHHHCHHHHHHHHHHHHHHHTTB--CGGGCCHHHH
T ss_pred cccccccccccccccccccccccccchhhhccccccccchHHHHHHHHhhHHHHHHHHHHHHHHHHHh--hhhhcchhHH
Confidence 0 00 00010 0011221111 11223346667777777777766 5778888888
Q ss_pred HHHhhH
Q 006960 465 ISEENE 470 (623)
Q Consensus 465 ~~~ene 470 (623)
|-.||-
T Consensus 542 lh~en~ 547 (575)
T 2i1j_A 542 IHRENV 547 (575)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887774
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.42 E-value=20 Score=31.99 Aligned_cols=80 Identities=15% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHH
Q 006960 388 AELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISE 467 (623)
Q Consensus 388 aELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ 467 (623)
..|..++.+|.+|+-.+=.-+.+|+++-..|..|...|..- |.....++......|..|.+.|...-.+++....
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~-----e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA-----EQRGELALKDARNKLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34678899999999999999999999888888887777421 2233344444444455554444444445555555
Q ss_pred hhHHH
Q 006960 468 ENEML 472 (623)
Q Consensus 468 ene~L 472 (623)
|+..|
T Consensus 104 EYq~L 108 (129)
T 3tnu_B 104 EYQEL 108 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 29
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=65.63 E-value=78 Score=28.57 Aligned_cols=79 Identities=32% Similarity=0.329 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHH----hhhhHHHHHHHHHHH
Q 006960 73 ELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDA----EDSKKQLLALSSKLQESQKQLQE----LSASEEARAVELQKV 144 (623)
Q Consensus 73 eLesql~q~QeeLkkaKeQL~~sE~~K~~a~~el----eEskkQl~e~SskLeesQkQ~~e----~Sa~e~sr~~Elqk~ 144 (623)
|--+|..++|..+..+++||...-..|....+.+ ++.++|+..+....+.++..+.+ |+.+=...-.+|.++
T Consensus 3 ~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 3 ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677788888888888877777777776655 56677888888777776665544 233333444456666
Q ss_pred hHHhHHh
Q 006960 145 SQETDQS 151 (623)
Q Consensus 145 ~q~~d~~ 151 (623)
...|+++
T Consensus 83 t~~Re~V 89 (112)
T 1x79_B 83 MQSREQV 89 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666665
No 30
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=65.14 E-value=77 Score=28.34 Aligned_cols=112 Identities=18% Similarity=0.239 Sum_probs=62.7
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006960 438 NNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADK 517 (623)
Q Consensus 438 ~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~ 517 (623)
..++++++.++..|+..|..-+.....+...|..|-.+.+.... ...++-+.+. .-++...+|-.-.-+++
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~-------qL~~E~~~l~-e~EE~~~~L~~~k~eLe- 82 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL-------QVQAEQDNLA-DAEERCDQLIKNKIQLE- 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-hHHHHHHHHHHHHHHHH-
Confidence 45677788888888888876666666666666655555542111 1111111111 11233333333333332
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHH
Q 006960 518 SNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAA 560 (623)
Q Consensus 518 s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaA 560 (623)
....-+.++|+--+..|..|.++-++|--+|+-+++--+..
T Consensus 83 --~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 83 --AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777777777776655543
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.50 E-value=22 Score=32.69 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=8.5
Q ss_pred HHHHHHhhhhhHHHHHHhhc
Q 006960 386 LEAELQKAKSDIEELKANLM 405 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LM 405 (623)
|+.++...+.++..||-.|.
T Consensus 80 L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 32
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=63.65 E-value=75 Score=28.19 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 006960 213 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 292 (623)
Q Consensus 213 aetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskL 292 (623)
-|||++...+++.-.=++.-=.+|+..+-.+..|.-+.+.||..|++-..+-+.- -..-..+|++|++.|.+|
T Consensus 7 ~dGLrAq~ECrNvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq-------~q~qq~~v~elqgEI~~L 79 (99)
T 3ni0_A 7 RDGLRAQAECRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQ-------ALEQQARIKELENEVTKL 79 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHH
Confidence 4789999999998888877678899988999999999999999988754443310 011125799999988888
Q ss_pred hhhh
Q 006960 293 EADT 296 (623)
Q Consensus 293 q~~~ 296 (623)
.-.+
T Consensus 80 nq~L 83 (99)
T 3ni0_A 80 NQEL 83 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 33
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.94 E-value=85 Score=28.06 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhh
Q 006960 384 VELEAELQKAKSDIEELKANLMDKETELQ 412 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ 412 (623)
.+|.++-+++..+|.+|+..|=|-|..||
T Consensus 100 ~~L~~~kkkle~e~~~Lk~~led~e~~l~ 128 (129)
T 2fxo_A 100 AELTAKKRKLEDECSELKRDIDDLELTLA 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45777778888888888888877776554
No 34
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.97 E-value=19 Score=32.39 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=41.7
Q ss_pred HHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHH
Q 006960 388 AELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISE 467 (623)
Q Consensus 388 aELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ 467 (623)
..|..++.+|.+|+-.+=.-+.+|+++-..|..|...|..- |.....++......|..|.+.|...-.+++....
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~-----e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~ 105 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEET-----KGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQ 105 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999999999999999999888888777766421 2233334444444444444444433334444555
Q ss_pred hhHHH
Q 006960 468 ENEML 472 (623)
Q Consensus 468 ene~L 472 (623)
|+..|
T Consensus 106 EYq~L 110 (131)
T 3tnu_A 106 EYKIL 110 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 35
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=61.71 E-value=1.1e+02 Score=28.81 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=14.4
Q ss_pred ccCCCCCCCCCCccCCCCchhhhHHHHHHHHH
Q 006960 52 VIDRRSPRSPVSERKRPSRISELESQVSRLQE 83 (623)
Q Consensus 52 v~dRrspr~p~~ekKr~~r~seLesql~q~Qe 83 (623)
+.+...|..|.||+++..=+.|++-.|.-+.+
T Consensus 26 s~~~~~~~~~s~P~~k~~SleEIqkKLeAAEE 57 (143)
T 3ryc_E 26 SFDGVPEFNASLPRRRDPSLEEIQKKLEAAEE 57 (143)
T ss_dssp SSCSSCC------CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 33445666666665555556676666655533
No 36
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=60.61 E-value=1.1e+02 Score=28.76 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=59.1
Q ss_pred chhhHHHHHHHHHHHHHh---hhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhh
Q 006960 336 LKSEVGQLRSALEIAETK---LNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQ 412 (623)
Q Consensus 336 ~ksEIeeLRsaLe~~Etr---~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ 412 (623)
+-.+++.--..++.+|.+ +.++....+=.++ -|+..-..+++|+..++..++.+. ..|-+.|+...
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlK----sLE~seekasqrEd~yEeqIk~L~-------~kLKEAE~RAE 94 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLK----SLEAQAEKYSQKEDKYEEEIKVLS-------DKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 334444444556666666 3454444443333 255566678888888776666554 44444444443
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006960 413 GISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 413 ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
...-.-..|...| ..|+.+|..-......+...|-.-=.+|.++..-|-.|-++++
T Consensus 95 ~AERsv~kLEk~i---------d~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 95 FAERSVTKLEKSI---------DDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 3322222233333 2233333333333333444444444455555555555555554
No 37
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=60.40 E-value=5.3 Score=31.98 Aligned_cols=21 Identities=43% Similarity=0.814 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhhccCCCC
Q 006960 550 SDQWRKAAEAAASMLSTGNNG 570 (623)
Q Consensus 550 seQWRKAAeaAaa~Ls~g~ng 570 (623)
.+.|.|-|+.||-+|-||++|
T Consensus 12 feewkklaeeaaklleggggg 32 (62)
T 2i7u_A 12 FEEWKKLAEEAAKLLEGGGGG 32 (62)
T ss_dssp HHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 478999999999999876633
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.73 E-value=59 Score=29.86 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=17.6
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006960 437 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 437 l~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
|..++..++.++..||-.|-....++..+..+++.|+.+++
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.43 E-value=1e+02 Score=27.62 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=43.9
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 006960 439 NDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKS 518 (623)
Q Consensus 439 ~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s 518 (623)
..|.....+|.+|+-.+-..+.+|+++...|..|...|. ++-..-+.+ -..+-.+++.+..++..-
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~-----------e~e~~~~~~---l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLE-----------ETKGRYCMQ---LAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345556677888888888888888888888888876665 222111111 133344455555555544
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHH
Q 006960 519 NRRAARMAEQLEAAQSANCEAEAEL 543 (623)
Q Consensus 519 ~~~~ar~~EqL~aaq~a~~elEaEl 543 (623)
....++.......-=-.+..|+.|+
T Consensus 97 r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 97 RCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333333445555554
No 40
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=57.41 E-value=95 Score=26.86 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=52.6
Q ss_pred HHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhh
Q 006960 248 ETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESK 327 (623)
Q Consensus 248 E~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (623)
++-+.-+.+|+.+...+.+.+..+...+...+.+...+|+.|..|+-++.
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~------------------------------ 54 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR------------------------------ 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------------------------
Confidence 34455667777777777777777777777777777777777777775433
Q ss_pred hHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006960 328 HLEEELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 328 ~Le~EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
.++.+|..+...+......|+.++....
T Consensus 55 ~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 55 VTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2555666666666666666666665553
No 41
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.00 E-value=1.4e+02 Score=28.66 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=10.7
Q ss_pred HHHHHhhchhhHHHHHHHHHHHH
Q 006960 329 LEEELSSLKSEVGQLRSALEIAE 351 (623)
Q Consensus 329 Le~EL~s~ksEIeeLRsaLe~~E 351 (623)
|+.-+.++..|+..+|..+..++
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555544333
No 42
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.93 E-value=21 Score=30.34 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=45.4
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhH
Q 006960 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI 465 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~ 465 (623)
|..++..+...++.+|.+.= + +|..+ ...++++..+..+|+.+--.-.|.|+.++++
T Consensus 19 l~~e~dn~~~~~edfk~KyE---~--------------E~~~R------~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL 75 (86)
T 3swk_A 19 VEVERDNLAEDIMRLREKLQ---E--------------EMLQR------EEAENTLQSFRQDVDNASLARLDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---H--------------HHHHH------HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---H--------------HHHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666542 1 11112 4556777777788888888888999999999
Q ss_pred HHhhHHHHH
Q 006960 466 SEENEMLKL 474 (623)
Q Consensus 466 ~~ene~Lk~ 474 (623)
.+|..-||.
T Consensus 76 ~eEl~fLkk 84 (86)
T 3swk_A 76 QEEIAFLKK 84 (86)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999888763
No 43
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.78 E-value=54 Score=30.03 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=34.1
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006960 440 DLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478 (623)
Q Consensus 440 ~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k 478 (623)
.++.+..+|..|+..|-|.+.+++.+..+|+.|..-|..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 467777889999999999999999999999999988863
No 44
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.60 E-value=27 Score=33.15 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006960 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK 458 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk 458 (623)
..|+.++..+...|..|...|-.|..-++.+.+|...|+.++. .++..+.++..+-..|=.++|++
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n---------~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN---------VLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888888888888888888888888888888874 44556666666666666666654
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=53.97 E-value=1.2e+02 Score=28.73 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=40.9
Q ss_pred hhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006960 433 RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 433 ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
....|..++..+...|..|+..|..|.+-++.+..|+..|..+++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999999999999999999999999999988
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.87 E-value=17 Score=28.69 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhh
Q 006960 446 QAVEDLKANLMDKETELQNISEENEMLKLEISKRE 480 (623)
Q Consensus 446 ~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e 480 (623)
.+|..||..+.+.-..+..+.++|+.|+.++.+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~e 53 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46666777666666688888999999998887653
No 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.54 E-value=1.2e+02 Score=26.93 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=49.2
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 006960 439 NDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKS 518 (623)
Q Consensus 439 ~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s 518 (623)
..|.....+|.+|+-.+-..+.+|+++...|..|...|. ++-..-+. .-..+-.+++.+..++..-
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~-----------e~e~~~~~---~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA-----------DAEQRGEL---ALKDARNKLAELEEALQKA 94 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHH---HHHHHHHHHHHHHHhHHHH
Confidence 345566778888888888888888888888888877775 22211111 1133444555555555554
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHH
Q 006960 519 NRRAARMAEQLEAAQSANCEAEAEL 543 (623)
Q Consensus 519 ~~~~ar~~EqL~aaq~a~~elEaEl 543 (623)
....++.......-=..+..|+.|+
T Consensus 95 r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 95 KQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333333445555554
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.05 E-value=1.2e+02 Score=26.19 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006960 506 MKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRL 546 (623)
Q Consensus 506 ~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrL 546 (623)
-|+..+..|+|+...+......+|+.++-..+..|+++--|
T Consensus 51 kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 51 KQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999999999998888888887544
No 49
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.70 E-value=57 Score=30.35 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=8.7
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhHhh
Q 006960 204 ELQSLKGNLIETISLMENMKNQLRESK 230 (623)
Q Consensus 204 ELe~lk~~laetl~lvE~lKs~l~e~k 230 (623)
.+..|+..+.|+-.+|+.+..++.+++
T Consensus 104 r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 104 LNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666555
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.65 E-value=1.4e+02 Score=24.70 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006960 253 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 295 (623)
Q Consensus 253 tve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~ 295 (623)
-+.+|+.+...+.+-+..+...|...+.+...+|..|.-|+..
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kK 49 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKK 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555543
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.64 E-value=2.7e+02 Score=28.85 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=27.2
Q ss_pred HHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHH
Q 006960 451 LKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEAL 505 (623)
Q Consensus 451 LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~ 505 (623)
.+......-.+.+.+.++|+.|+.++. +....+.-|++.=++|.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNG-----------EADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhh-----------hhhhhhHhcccHHHHHH
Confidence 333333445578888889999998888 55555555554444443
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.62 E-value=1.5e+02 Score=24.50 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhh
Q 006960 505 LMKLGLLMEEADKSNRRAARMAEQLEAAQSAN 536 (623)
Q Consensus 505 ~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~ 536 (623)
--|+..+.+++|+...+......+|+.+..+.
T Consensus 47 ~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 47 QKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666888899999999998888888876543
No 53
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=39.34 E-value=1.8e+02 Score=24.87 Aligned_cols=42 Identities=31% Similarity=0.329 Sum_probs=34.8
Q ss_pred HHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006960 505 LMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRL 546 (623)
Q Consensus 505 ~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrL 546 (623)
--|+..+..++|+...+......+|+.++-+.+..|+|.--|
T Consensus 50 ~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 50 QKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999998888888887544
No 54
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.48 E-value=51 Score=27.70 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=40.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006960 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQK 125 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQk 125 (623)
.||.+||.++.....-+..+++.+ .+-+.++...++|+..+..+|.+.+-
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v-------~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEAL-------ADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 589999999999999999999999 78888889999999999888877653
No 55
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=38.44 E-value=3.3e+02 Score=27.53 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCCCCCCCCCccCCCCchhhhHHHHHHHHH-----HHHHHHhhhhhhHHHHHHHHHHHHH
Q 006960 54 DRRSPRSPVSERKRPSRISELESQVSRLQE-----DLKKAKNQLSSSESWKQQAQQDAED 108 (623)
Q Consensus 54 dRrspr~p~~ekKr~~r~seLesql~q~Qe-----eLkkaKeQL~~sE~~K~~a~~eleE 108 (623)
+..+|..|+||+++..=+.+++-.|.-+.+ +...++..-.--+..+.-++..+++
T Consensus 27 ~~~~~~~~s~P~kk~~SleEIqkKLeAAEERRks~Ea~~lk~laekrEhe~evlqKa~Ee 86 (240)
T 4f61_I 27 DGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEE 86 (240)
T ss_dssp CSSCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566665555667777777755543 3333443333334444444444443
No 56
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=37.74 E-value=1e+02 Score=29.06 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 006960 521 RAARMAEQLEAAQSANCEAEAEL 543 (623)
Q Consensus 521 ~~ar~~EqL~aaq~a~~elEaEl 543 (623)
---.+.--|+|+..|+-.+|+.|
T Consensus 116 SRqgLrRDLeASReAKKqlEadl 138 (146)
T 2xnx_M 116 SRQSLRRDLDASREAKKQVEKDL 138 (146)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777777777777665
No 57
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.65 E-value=1.2e+02 Score=25.76 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=14.1
Q ss_pred hHHHHHHhhHHHHHHHHHhhhhhHHHHhhH
Q 006960 436 QLNNDLRKLAQAVEDLKANLMDKETELQNI 465 (623)
Q Consensus 436 el~~~l~~~~~~v~~LKa~L~dke~elq~~ 465 (623)
....++..+...+..|+..+-..+.+++.+
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444444443
No 58
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.06 E-value=1.1e+02 Score=27.64 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=30.4
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006960 441 LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478 (623)
Q Consensus 441 l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k 478 (623)
...+...|+.|.+.|...-...|....||+.|+.++..
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677888888888888888889999999999874
No 59
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.23 E-value=1.7e+02 Score=23.46 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=31.3
Q ss_pred HhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Q 006960 144 VSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFE 185 (623)
Q Consensus 144 ~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~ 185 (623)
...+.+.-|++=++.++.+-..+...|-.+-.||-.|+.++.
T Consensus 25 nr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq 66 (77)
T 3trt_A 25 NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQ 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445566677777888888777777788888888877777664
No 60
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.66 E-value=2.4e+02 Score=23.88 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=17.0
Q ss_pred hhhHHHHHhhchhhHHHHHHHHHHHHHhh
Q 006960 326 SKHLEEELSSLKSEVGQLRSALEIAETKL 354 (623)
Q Consensus 326 ~~~Le~EL~s~ksEIeeLRsaLe~~Etr~ 354 (623)
....+.++..+..++..|+..+...+.++
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666555444
No 61
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=31.62 E-value=3.5e+02 Score=25.90 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=44.7
Q ss_pred HHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhh
Q 006960 219 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADT 296 (623)
Q Consensus 219 vE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~ 296 (623)
...+|-...++...-+.....+.++.-.+-.....-+.|..+...++..+.+=+...-+..-.+.+|+.-|..|+.++
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El 106 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEV 106 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666665666666666665554444455566666666665555555555555555555555555555443
No 62
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.76 E-value=1.4e+02 Score=26.80 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006960 76 SQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLL 114 (623)
Q Consensus 76 sql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~ 114 (623)
+.+..+|++++.--.|| --|.++|+++.++..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL-------~iArQKLkdAe~~~E 66 (107)
T 2k48_A 35 STLQELQENITAHEQQL-------VTARQKLKDAEKAVE 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 34456667777666677 666666666666554
No 63
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.65 E-value=4.8e+02 Score=29.23 Aligned_cols=53 Identities=15% Similarity=0.331 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhh
Q 006960 178 QQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESK 230 (623)
Q Consensus 178 q~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~k 230 (623)
+.|+..+....+-++.-....++..-.|+.||.+|..-+..|-.|++.|.+..
T Consensus 92 E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 92 EILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555666666666665566655555555443
No 64
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.49 E-value=1.6e+02 Score=26.02 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=16.1
Q ss_pred hHHHHHhhchhhHHHHHHHHH
Q 006960 328 HLEEELSSLKSEVGQLRSALE 348 (623)
Q Consensus 328 ~Le~EL~s~ksEIeeLRsaLe 348 (623)
+.+.++..+..|++.||..+-
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888764
No 65
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.90 E-value=89 Score=34.46 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhch
Q 006960 502 KEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQS 550 (623)
Q Consensus 502 ~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQs 550 (623)
.++.+....+.++.++..+-+.++.++|..|+.+..+...+|...-...
T Consensus 415 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~~~ 463 (575)
T 2i1j_A 415 RAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQ 463 (575)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHTTSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3455666788888889999999999999999999888888887766543
No 66
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.36 E-value=3e+02 Score=23.68 Aligned_cols=33 Identities=12% Similarity=0.388 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006960 446 QAVEDLKANLMDKETELQNISEENEMLKLEISK 478 (623)
Q Consensus 446 ~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k 478 (623)
.+-+.++-.+++.+.++++|.....--..++.+
T Consensus 60 ~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 60 REYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888887766666555543
No 67
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.23 E-value=2.3e+02 Score=26.98 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhH
Q 006960 72 SELESQVSRLQEDLKKAKNQLSSSE 96 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE 96 (623)
.+++.++.+++.+|..++.+|..+.
T Consensus 56 ~~~~~~l~~a~a~l~~a~a~l~~a~ 80 (277)
T 2f1m_A 56 ATYQATYDSAKGDLAKAQAAANIAQ 80 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776664433
No 68
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.99 E-value=2.6e+02 Score=23.97 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHH
Q 006960 499 SAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAE 558 (623)
Q Consensus 499 ~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAe 558 (623)
++-+.|+-....+..|+++-...-..+..+...+...+..+..|..+|+-+-..|..--.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777788888888888888999999999999999999999999999986544
No 69
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.28 E-value=3.1e+02 Score=23.50 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhh
Q 006960 238 ALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 294 (623)
Q Consensus 238 aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~ 294 (623)
.+++.+..+++.+--||..|+-+..-+++....|..+.+..+.....|.....+|+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455666666667777777777777777777777777666666666666655555554
No 70
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.10 E-value=2e+02 Score=28.50 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhh
Q 006960 72 SELESQVSRLQEDLKKAKNQLSSS 95 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~s 95 (623)
.+++.++.+++.+|..++.+|..+
T Consensus 66 ~~~~~~l~~~~a~l~~~~a~l~~a 89 (369)
T 4dk0_A 66 TTQINTLNTRKAALASYQAQLVAR 89 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777776666666333
No 71
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=26.00 E-value=3e+02 Score=23.23 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 006960 176 ELQQLKAQFEMVAE 189 (623)
Q Consensus 176 Eiq~LK~qL~~~~e 189 (623)
||+.|+.|+....-
T Consensus 1 Ei~eLr~qi~~l~~ 14 (86)
T 3swk_A 1 EMRELRRQVDQLTN 14 (86)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 46677777765443
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.48 E-value=4e+02 Score=29.85 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHH
Q 006960 214 ETISLMENMKNQLRESKESETQAQALARETLLQL 247 (623)
Q Consensus 214 etl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QL 247 (623)
+-...|+.||+++.++.++...+..++..+.-.|
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 3356788888888888777777777765554444
No 73
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.40 E-value=1.2e+02 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhhhhhhhh
Q 006960 332 ELSSLKSEVGQLRSALEIAETKLNEGQIQS 361 (623)
Q Consensus 332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~s 361 (623)
|+.++++-...|...|.+.|.+|.-+..+.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~ 31 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANY 31 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888899999999886444333
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.33 E-value=4.7e+02 Score=27.07 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=17.8
Q ss_pred HhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHh
Q 006960 442 RKLAQAVEDLKANLMDKETELQNISEENEMLKLEI 476 (623)
Q Consensus 442 ~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~ 476 (623)
.++...+.++...+.++...++.+...-..|-.++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 452 ARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 33444444555555555556666655555554443
No 75
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.32 E-value=2.8e+02 Score=23.70 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=8.8
Q ss_pred hhhhhhhhhhhhhhh
Q 006960 412 QGISEENEGLHMQLD 426 (623)
Q Consensus 412 Q~IsEENE~L~~ei~ 426 (623)
+.+-.+|..|..+|.
T Consensus 26 R~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 26 RFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344456666666665
No 76
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.52 E-value=3.7e+02 Score=23.75 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcH
Q 006960 175 NELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNL 212 (623)
Q Consensus 175 ~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~l 212 (623)
.+|..|+.||..+..-.+.-.-..+.++..++.+|...
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46888888887766655555555555555555555544
No 77
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.89 E-value=2e+02 Score=24.50 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=26.0
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhcc
Q 006960 262 MKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 299 (623)
Q Consensus 262 ~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~ 299 (623)
.-++..+.++..-|..++.+-+.||+-|..|+.++..+
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s 39 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEA 39 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34566677888889999999999999999999877633
No 78
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.85 E-value=2.7e+02 Score=25.06 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=29.8
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhH
Q 006960 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI 465 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~ 465 (623)
|...=...+..|.+|.....+-|..|+.+-..-..++..+. +.+..|......-=.+|-.|
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq-------------------~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ-------------------EQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 44444455667788888888777777765443333333332 22333333333333466667
Q ss_pred HHhhHHH
Q 006960 466 SEENEML 472 (623)
Q Consensus 466 ~~ene~L 472 (623)
..||+.|
T Consensus 97 Q~eNd~L 103 (112)
T 1x79_B 97 QKDNDSL 103 (112)
T ss_dssp -------
T ss_pred Hhhccch
Confidence 7777776
No 79
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.57 E-value=3.8e+02 Score=26.19 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhhhhHHHHHHHHHHHhHHh
Q 006960 72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALS---SKLQESQKQLQELSASEEARAVELQKVSQET 148 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~S---skLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~ 148 (623)
.+++.++.+++..|..++.+|..+++.-..+..+++..+.-...=. ..++.++.++...-+.....-..|..+..++
T Consensus 65 ~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l 144 (341)
T 3fpp_A 65 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASL 144 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHh
Q 006960 149 DQS 151 (623)
Q Consensus 149 d~~ 151 (623)
+..
T Consensus 145 ~~a 147 (341)
T 3fpp_A 145 DTA 147 (341)
T ss_dssp TTT
T ss_pred HHH
No 80
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.22 E-value=2e+02 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.394 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006960 78 VSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQL 113 (623)
Q Consensus 78 l~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl 113 (623)
+..+|++++.--.|| --|.+.|+++.++.
T Consensus 7 l~eLq~e~~~~E~QL-------~~A~QKLkdA~~~~ 35 (78)
T 2ic6_A 7 LKEVQDNITLHEQRL-------VTTRQKLKDAERAV 35 (78)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 345555555555555 55555555555544
No 81
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.13 E-value=3.5e+02 Score=23.07 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=12.9
Q ss_pred hHHHHhhHHHhhHHHH
Q 006960 458 KETELQNISEENEMLK 473 (623)
Q Consensus 458 ke~elq~~~~ene~Lk 473 (623)
.-.+++++..||..|.
T Consensus 7 mgkevEnLi~EN~eLl 22 (77)
T 2w83_C 7 MGREVENLILENTQLL 22 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4568899999999884
No 82
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.87 E-value=1.4e+02 Score=23.80 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=19.5
Q ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHh
Q 006960 434 ESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEI 476 (623)
Q Consensus 434 e~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~ 476 (623)
..+|..+...+..+...|+. ++..+..|+..||.-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~-------~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKE-------RADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 44555555555555555555 5555555666665544
No 83
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.86 E-value=2.7e+02 Score=21.89 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 006960 100 QQAQQDAEDSKKQLLALSSKLQE 122 (623)
Q Consensus 100 ~~a~~eleEskkQl~e~SskLee 122 (623)
.++..-|.+++.++..+.++|+.
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555543
No 84
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=20.93 E-value=4.3e+02 Score=23.23 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhh-----hhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHH
Q 006960 199 ESAHLELQSLKGNLIETISLMENMKNQLRESK-----ESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIAS 273 (623)
Q Consensus 199 e~a~~ELe~lk~~laetl~lvE~lKs~l~e~k-----eSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~ 273 (623)
.++..+|-..++.-.+..+....|..++...+ +.+.+...| +.+...|++....|..|.........+-..+..
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~l-e~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~ 89 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVL-ESLKQELATSQRELQVLQGSLETSAQSEANWAA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH
Q 006960 274 ELERSRTRINLLEGLVS 290 (623)
Q Consensus 274 eLe~S~~r~~~LE~lvs 290 (623)
.|.........|...+.
T Consensus 90 ~~~~l~~Ek~~L~~~~~ 106 (107)
T 2no2_A 90 EFAELEKERDSLVSGAA 106 (107)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhhc
No 85
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.14 E-value=3.6e+02 Score=23.26 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=35.7
Q ss_pred hhHHHHhhHHHHHHHHhhh-cccchHHHHHHHHhhhhhHHHHHHhhcc
Q 006960 360 QSTVKIKSAFEQLEQIKHQ-SGLREVELEAELQKAKSDIEELKANLMD 406 (623)
Q Consensus 360 ~st~~i~~aye~~e~~Kse-s~qRE~ELeaELKk~ksdIeELKA~LMD 406 (623)
+=-++|+..||-|-.+=.. -.+|+ .++.+|+..+..|..|+..|-+
T Consensus 35 ~KElKiKeGaENL~katt~~kk~~~-~V~~eL~~sn~kl~~L~~eL~e 81 (86)
T 1cxz_B 35 RKELKLKEGAENLRRATTDLGRSLG-PVELLLRGSSRRLDLLHQQLQE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3447788888888766666 55665 6888899999999999988753
Done!