BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006961
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 358 bits (919), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/537 (34%), Positives = 307/537 (57%), Gaps = 30/537 (5%)
Query: 40 TTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGI 99
+ + +G++T D ++ F +TYG P+ F + + ++ A+ +GI
Sbjct: 26 NNISLVYGENTEAIQ--DRQALKEFFKNTYGLPIISFTEGESSLSFSK------ALNIGI 77
Query: 100 VFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTYKNQG 159
+ G +PGGHNV+ G++DA+K NP S +E+T+ ++++Y+N G
Sbjct: 78 ILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTG 137
Query: 160 GYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTK 219
G+D++ + +I T E N AL K NL+ ++IIGG SNT+AA LAE F + +
Sbjct: 138 GFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQ 197
Query: 220 VVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASH 279
V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C DA+S +KY++F++LMGR ASH
Sbjct: 198 VIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASH 257
Query: 280 VALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIES 339
VALEC L++HPN+ I+ EEV A K TL ++ ++ + R+ N GV+++PEGLIE
Sbjct: 258 VALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEF 317
Query: 340 IPEVYALLKEIHSLLR------QGVPVDNIS----SQLSPWASALFEFLPPFIKKQL--- 386
IPEV +L+ E+ + +G+ ++ + ++LS + ++ LP FI+ +L
Sbjct: 318 IPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKS 377
Query: 387 LLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPS 446
+L+ + + +S++ TEKL +++ +N K G YKG F + HFFGY+ R + PS
Sbjct: 378 ILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG-SFTPVDHFFGYEGRSAFPS 436
Query: 447 KFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTV-KRWSQNP 505
FD DY Y LG+ ++ GL GYM+ + NL W G P+T +M + +R+ +
Sbjct: 437 NFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEERYGEK- 495
Query: 506 GASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVT 562
+P I A VD+ G+ ++ +N ++ L++LY PGPVQ+ G +T
Sbjct: 496 ------KPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEIT 546
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 21/242 (8%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 155
R+G++ G SPG + V + H+ + + LE+ +
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISGKIEKLELGS--VGDI 60
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 214
++GG + + +T E + K L ++GLV+IGG D +Y+ A+ E
Sbjct: 61 IHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGG-----DGSYMGAKKLTEH 115
Query: 215 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274
P VGVP T++ D+ + +GFDT I + A S E+ Y I +MG
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMG 170
Query: 275 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334
R A +AL L +++ E +D+ +I ++ E+ K H +I++ E
Sbjct: 171 RHAGDIALWAGLAGGAESILIPE-------ADYDM-HEIIARLKRGHERGKKHSIIIVAE 222
Query: 335 GL 336
G+
Sbjct: 223 GV 224
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 21/242 (8%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 155
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 214
++GG + + +T E + K ++GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGG-----DGSYQGAKKLTEH 115
Query: 215 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274
P VGVP T++ D+ + +GFDT I + A S E+ Y I +MG
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMG 170
Query: 275 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334
R A +AL L +++ E +D+ I + E+ K H +I++ E
Sbjct: 171 RHAGDIALWSGLAGGAETILIPE-------ADYDMNDVIARLKRGH-ERGKKHSIIIVAE 222
Query: 335 GL 336
G+
Sbjct: 223 GV 224
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 97/242 (40%), Gaps = 21/242 (8%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 155
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 214
++GG + + +T E + K + GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGG-----DGSYQGAKKLTEH 115
Query: 215 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274
P VGVP T++ D+ + +GFDT I + A S E+ Y I +MG
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMG 170
Query: 275 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334
R A +AL L +++ E +D+ I + E+ K H +I++ E
Sbjct: 171 RHAGDIALWSGLAGGAETILIPE-------ADYDMNDVIARLKRGH-ERGKKHSIIIVAE 222
Query: 335 GL 336
G+
Sbjct: 223 GV 224
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 21/242 (8%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTY 155
R+G++ G SPG + + + H + K LEV +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGD--VGDI 60
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 214
++GG + + +T E + K ++GLV+IGG D +Y A+ E
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGG-----DGSYQGAKKLTEH 115
Query: 215 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274
P VGVP T++ D+ + +GFDT I + A S E+ + I +MG
Sbjct: 116 GFPC--VGVPGTIDNDIPG--TDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMG 170
Query: 275 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334
R A +AL L +++ E +D+ I + E+ K H +I++ E
Sbjct: 171 RHAGDIALYSGLAGGAETILIPE-------ADYDMNDVIARLKRGH-ERGKKHSIIIVAE 222
Query: 335 GL 336
G+
Sbjct: 223 GV 224
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 179 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVET 238
A + K +D +V+IGG S A L + +G+P T++ D+ + +
Sbjct: 84 AGIEQLKKHGIDAVVVIGGDGSYHGALQLT------RHGFNSIGLPGTIDNDIP--YTDA 135
Query: 239 NVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEE 298
+G+DT C I + D S+ + + +MGR +A+ + + +++ E
Sbjct: 136 TIGYDTACMTAMDAIDKI-RDTASSHHRVFIVNVMGRNCGDIAMRVGVACGADAIVIPER 194
Query: 299 VAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLI 337
+D+ ++I + ++ E K+HG++++ EG++
Sbjct: 195 P-------YDV-EEIANRLKQAQESGKDHGLVVVAEGVM 225
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 10/187 (5%)
Query: 97 VGIVFCGRQSPGGHNVVWGL-YDALKLHNPKSTXXXXXX--XXXXXXAQKTLEVTKEILS 153
+GIV CG PG ++V+ + + ++N K +Q +E+ + ++
Sbjct: 100 IGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVT 159
Query: 154 TYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE 213
+ GG +LG ++ E V+ + L ++ L +GG + A +++
Sbjct: 160 NIHHYGG-TILGSSRGPQDPKEMVDT----LERLGVNILFTVGGDGTQRGALVISQEAKR 214
Query: 214 AKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLM 273
V GVP T++ DL F GF T + Q I +A+SA ++LM
Sbjct: 215 RGVDISVFGVPKTIDNDL--SFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLM 272
Query: 274 GRRASHV 280
GR + +
Sbjct: 273 GRDSGFI 279
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 33/248 (13%)
Query: 142 QKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNA-ALTACKNLNLDGLVIIGGVTS 200
+ +++ + +S N+GG LG + E + A A+ K +D LV+IGG
Sbjct: 48 DRMVQLDRYSVSDMINRGG-TFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGG--- 103
Query: 201 NTDAAYL-AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 259
D +Y+ A E P +G+P T++ D+K + +GF T + I + D
Sbjct: 104 --DGSYMGAMRLTEMGFPC--IGLPGTIDNDIKG--TDYTIGFFTALSTVVEAIDRL-RD 156
Query: 260 ALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA 319
S+ + + +MGR + L + V++ EV S+ + + + ++A
Sbjct: 157 TSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVV-PEVEFSR-------EDLVNEIKA 208
Query: 320 RAEQDKNHGVILLPEGLIESIPEVYALLKE---------IHSLLRQG--VPVDNI-SSQL 367
+ K H ++ + E + + + + KE + + R G VP D I +S++
Sbjct: 209 GIAKGKKHAIVAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRM 268
Query: 368 SPWASALF 375
+A L
Sbjct: 269 GAYAIDLL 276
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 155 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE---TF 211
+ QGG + + ++ EQ++A +T N+ GLVIIGG + T L E F
Sbjct: 459 WTGQGGSKLGSKRTLPKKSFEQISANIT---KFNIQGLVIIGGFEAYTGGLELMEGRKQF 515
Query: 212 AEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIR 271
E P V+ V+ N + V + +TIC ++ + A ++ + I
Sbjct: 516 DELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQS----AAGTKRRVFIIE 571
Query: 272 LMGRRASHVA 281
MG ++A
Sbjct: 572 TMGGYCGYLA 581
>pdb|1I4G|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin A Mutant
H187a With Reduced Zn2+ Affinity
pdb|1I4G|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin A Mutant
H187a With Reduced Zn2+ Affinity
pdb|1I4H|A Chain A, Crystal Structure Of Zn2+ Soaked Staphylococcal
Enterotoxin A Mutant H187a
pdb|1I4H|B Chain B, Crystal Structure Of Zn2+ Soaked Staphylococcal
Enterotoxin A Mutant H187a
Length = 233
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 424 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 483
YKGKK + ++GYQ G P+K C Y V H + K P N
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEK-----------KVPIN 128
Query: 484 KWRCGAAPITSMMTVKRWSQN 504
W G + TVK +N
Sbjct: 129 LWLDGKQNTVPLETVKTNKKN 149
>pdb|1ESF|A Chain A, Staphylococcal Enterotoxin A
pdb|1ESF|B Chain B, Staphylococcal Enterotoxin A
pdb|1SXT|A Chain A, Staphylococcal Enterotoxin Type A (Sea) Co-Crystallised
With Zinc
pdb|1SXT|B Chain B, Staphylococcal Enterotoxin Type A (Sea) Co-Crystallised
With Zinc
Length = 233
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 424 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 483
YKGKK + ++GYQ G P+K C Y V H + K P N
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEK-----------KVPIN 128
Query: 484 KWRCGAAPITSMMTVKRWSQN 504
W G + TVK +N
Sbjct: 129 LWLDGKQNTVPLETVKTNKKN 149
>pdb|1LO5|D Chain D, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
Length = 233
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 424 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 483
YKGKK + ++GYQ G P+K C Y V H + K P N
Sbjct: 80 YKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEK-----------KVPIN 128
Query: 484 KWRCGAAPITSMMTVKRWSQN 504
W G + TVK +N
Sbjct: 129 LWLDGKQNTVPLETVKTNKKN 149
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 444 LPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKR 500
+ SK D + AY +G G N M T+ + +W+ G A ++ + V++
Sbjct: 305 IASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEK 361
>pdb|3N0S|A Chain A, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|D Chain D, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|C Chain C, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|B Chain B, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
Length = 268
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 159 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 214
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVALSEVRSG 193
Query: 215 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 252
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 232
>pdb|3E4F|A Chain A, Crystal Structure Of Ba2930- A Putative Aminoglycoside N3-
Acetyltransferase From Bacillus Anthracis
pdb|3E4F|B Chain B, Crystal Structure Of Ba2930- A Putative Aminoglycoside N3-
Acetyltransferase From Bacillus Anthracis
Length = 265
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 159 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 214
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 131 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSG 190
Query: 215 KCPTKVVGVPVTLNGDL-----------KNQFVETNVGFDTICKVNSQLISN 255
C VG P+ NG+ ++FVE V F+ V I N
Sbjct: 191 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEFEQKGTVTXGKIGN 242
>pdb|3IJW|A Chain A, Crystal Structure Of Ba2930 In Complex With Coa
pdb|3IJW|B Chain B, Crystal Structure Of Ba2930 In Complex With Coa
pdb|3SLF|A Chain A, Crystal Structure Of Ba2930 In Complex With Accoa And
Uracil
pdb|3SLF|B Chain B, Crystal Structure Of Ba2930 In Complex With Accoa And
Uracil
Length = 268
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 159 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 214
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVHLSEVRSG 193
Query: 215 KCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQL 252
C VG P+ NG+ + +FV+ + D ++ +
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEF 232
>pdb|1DYQ|A Chain A, Staphylococcal Enterotoxin A Mutant Vaccine
Length = 234
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 424 YKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPAN 483
YKGKK + + GYQ G P+K C Y V H + K P N
Sbjct: 81 YKGKKVDLYGAYAGYQCAGGTPNKTACMYGGVTLHDNNRLTEEK-----------KVPIN 129
Query: 484 KWRCGAAPITSMMTVKRWSQN 504
W G + TVK +N
Sbjct: 130 LWLDGKQNTVPLETVKTNKKN 150
>pdb|3KZL|A Chain A, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|D Chain D, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|C Chain C, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|B Chain B, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3N0M|A Chain A, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3N0M|B Chain B, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3SLB|A Chain A, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|D Chain D, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|C Chain C, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|B Chain B, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
Length = 268
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 159 GGYDMLGRTKDQIRTTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEA 214
G + GR ++I + ++ +L L +LDG +++ GV +++ +
Sbjct: 134 GSFAAWGRHAEEITVNQSLSXSLGEESPLRKIYDLDGYILLIGVGYDSNTSVGLSEVRSG 193
Query: 215 KCPTKVVGVPVTLNGDL-----------KNQFVETNVGFDTICKVNSQLISN 255
C VG P+ NG+ ++FVE V F+ V I N
Sbjct: 194 ACELIKVGAPIIENGERVWKEFVDXDYDSDKFVEIGVEFEQKGTVTXGKIGN 245
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 333 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 381
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 255 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 300
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 333 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 381
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 255 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 300
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 333 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 381
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 333 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 381
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 333 PEGLIESIPEVYALLKEIHSLLRQGVPVDN-ISSQLSPWASALFEFLPPF 381
P G+++ IPE+ AL E H + G VD + + PWA L +PPF
Sbjct: 251 PHGVVDPIPEIAALAAE-HGI---GCHVDACLGGFILPWAERLGYPVPPF 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,622,597
Number of Sequences: 62578
Number of extensions: 699220
Number of successful extensions: 1672
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1645
Number of HSP's gapped (non-prelim): 35
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)