Query 006961
Match_columns 623
No_of_seqs 308 out of 1258
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03028 pyrophosphate--fructo 100.0 4E-162 9E-167 1348.6 60.7 597 27-623 12-610 (610)
2 PLN02251 pyrophosphate-depende 100.0 2E-144 5E-149 1197.9 54.2 531 24-569 34-566 (568)
3 cd00765 Pyrophosphate_PFK Phos 100.0 5E-141 1E-145 1169.5 53.7 525 27-566 11-550 (550)
4 TIGR02477 PFKA_PPi diphosphate 100.0 1E-140 3E-145 1168.0 53.4 525 28-567 7-539 (539)
5 PTZ00287 6-phosphofructokinase 100.0 2E-141 5E-146 1239.4 48.3 578 29-617 774-1402(1419)
6 PRK07085 diphosphate--fructose 100.0 4E-140 9E-145 1165.9 54.1 527 26-569 10-550 (555)
7 PTZ00468 phosphofructokinase f 100.0 4E-132 8E-137 1155.1 53.4 526 27-566 39-564 (1328)
8 PTZ00468 phosphofructokinase f 100.0 1E-131 3E-136 1150.7 51.6 576 29-618 596-1278(1328)
9 PTZ00287 6-phosphofructokinase 100.0 7E-127 1E-131 1117.6 52.7 522 26-568 113-638 (1419)
10 PLN02564 6-phosphofructokinase 100.0 1.2E-90 2.5E-95 755.8 41.8 433 9-533 8-442 (484)
11 cd00363 PFK Phosphofructokinas 100.0 3.8E-84 8.3E-89 686.3 36.8 336 95-531 1-337 (338)
12 PTZ00286 6-phospho-1-fructokin 100.0 1E-83 2.2E-88 702.3 40.8 347 73-495 69-416 (459)
13 PRK06830 diphosphate--fructose 100.0 2E-82 4.3E-87 689.0 39.9 370 70-532 59-432 (443)
14 PLN02884 6-phosphofructokinase 100.0 1.6E-81 3.4E-86 677.7 38.5 364 73-531 35-402 (411)
15 PRK14072 6-phosphofructokinase 100.0 1.1E-81 2.3E-86 682.5 37.3 342 94-500 3-360 (416)
16 COG0205 PfkA 6-phosphofructoki 100.0 1.4E-80 2.9E-85 655.3 31.6 341 94-530 2-344 (347)
17 TIGR02483 PFK_mixed phosphofru 100.0 4.5E-78 9.7E-83 635.8 35.4 320 96-495 1-323 (324)
18 PRK03202 6-phosphofructokinase 100.0 6.2E-77 1.3E-81 625.9 35.7 301 95-499 2-304 (320)
19 PRK14071 6-phosphofructokinase 100.0 1.1E-76 2.4E-81 633.2 37.6 340 94-533 4-354 (360)
20 TIGR02482 PFKA_ATP 6-phosphofr 100.0 7.7E-77 1.7E-81 620.1 35.3 299 96-495 1-300 (301)
21 PRK06555 pyrophosphate--fructo 100.0 1.8E-76 3.9E-81 633.9 38.3 336 94-497 3-378 (403)
22 cd00763 Bacterial_PFK Phosphof 100.0 4.5E-76 9.7E-81 618.7 35.6 302 95-500 1-303 (317)
23 TIGR02478 6PF1K_euk 6-phosphof 100.0 5.4E-72 1.2E-76 640.8 38.5 355 95-545 1-381 (745)
24 cd00764 Eukaryotic_PFK Phospho 100.0 1.1E-71 2.3E-76 635.8 38.6 356 93-541 2-380 (762)
25 PF00365 PFK: Phosphofructokin 100.0 2.1E-71 4.5E-76 575.8 32.3 281 95-466 1-282 (282)
26 TIGR02478 6PF1K_euk 6-phosphof 100.0 2.1E-69 4.6E-74 619.5 38.8 319 91-500 386-718 (745)
27 cd00764 Eukaryotic_PFK Phospho 100.0 1.4E-65 3.1E-70 585.6 36.0 313 91-497 386-717 (762)
28 KOG2440 Pyrophosphate-dependen 100.0 7.2E-62 1.6E-66 539.6 6.2 587 11-613 41-661 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 1.5E-35 3.3E-40 329.9 19.4 305 99-500 1-325 (666)
30 PRK04885 ppnK inorganic polyph 90.7 1.2 2.5E-05 46.8 9.0 69 174-257 14-91 (265)
31 PRK04761 ppnK inorganic polyph 90.0 0.68 1.5E-05 48.1 6.4 55 174-245 5-65 (246)
32 PRK14077 pnk inorganic polypho 89.9 1.2 2.6E-05 47.2 8.4 53 188-257 64-118 (287)
33 PRK00561 ppnK inorganic polyph 89.4 0.58 1.3E-05 48.9 5.4 56 175-247 15-75 (259)
34 COG3199 Predicted inorganic po 89.2 0.67 1.4E-05 50.1 5.7 72 172-258 84-156 (355)
35 cd01537 PBP1_Repressors_Sugar_ 89.1 21 0.00046 34.8 16.1 113 96-256 1-113 (264)
36 PRK14075 pnk inorganic polypho 86.6 2.4 5.3E-05 44.1 7.9 51 187-257 40-92 (256)
37 PF01513 NAD_kinase: ATP-NAD k 86.0 0.65 1.4E-05 48.9 3.4 60 182-258 70-131 (285)
38 PRK01911 ppnK inorganic polyph 85.6 1.8 3.9E-05 46.0 6.5 54 188-258 64-119 (292)
39 PRK02649 ppnK inorganic polyph 84.7 1.8 4E-05 46.3 6.0 53 188-257 68-122 (305)
40 PRK04539 ppnK inorganic polyph 83.8 2.1 4.6E-05 45.6 6.1 53 188-257 68-122 (296)
41 PRK03378 ppnK inorganic polyph 83.6 2.7 5.8E-05 44.8 6.7 43 188-247 63-105 (292)
42 PLN02935 Bifunctional NADH kin 82.9 2.3 5E-05 48.4 6.1 53 188-257 262-316 (508)
43 PRK03372 ppnK inorganic polyph 82.6 2.2 4.7E-05 45.8 5.6 53 188-257 72-126 (306)
44 PLN02929 NADH kinase 82.5 1.5 3.3E-05 46.8 4.3 54 188-247 64-123 (301)
45 cd06321 PBP1_ABC_sugar_binding 82.5 46 0.001 33.3 15.0 103 96-244 1-103 (271)
46 PF02844 GARS_N: Phosphoribosy 82.1 2.9 6.3E-05 37.7 5.3 93 95-224 1-93 (100)
47 PF00465 Fe-ADH: Iron-containi 81.8 3 6.4E-05 45.3 6.4 57 173-229 63-133 (366)
48 PRK03708 ppnK inorganic polyph 80.9 2.7 5.9E-05 44.3 5.5 43 187-247 56-98 (277)
49 cd08180 PDD 1,3-propanediol de 78.6 5.4 0.00012 42.8 7.0 54 173-226 63-118 (332)
50 PRK03501 ppnK inorganic polyph 78.2 4.5 9.7E-05 42.5 6.1 54 189-257 40-95 (264)
51 PRK14076 pnk inorganic polypho 77.6 10 0.00022 44.0 9.3 52 188-256 348-401 (569)
52 PRK01231 ppnK inorganic polyph 77.6 4.7 0.0001 43.0 6.1 53 188-257 62-116 (295)
53 cd08189 Fe-ADH5 Iron-containin 76.3 7.3 0.00016 42.6 7.3 55 173-227 68-136 (374)
54 cd08551 Fe-ADH iron-containing 76.1 6.9 0.00015 42.5 7.0 55 173-227 65-132 (370)
55 PRK02231 ppnK inorganic polyph 75.6 3.1 6.7E-05 43.9 4.0 43 188-247 42-84 (272)
56 cd08177 MAR Maleylacetate redu 75.0 6.6 0.00014 42.3 6.5 53 173-230 62-114 (337)
57 cd08184 Fe-ADH3 Iron-containin 74.7 30 0.00065 37.7 11.5 54 173-226 63-132 (347)
58 PF13407 Peripla_BP_4: Peripla 74.5 42 0.0009 33.4 11.8 174 97-318 1-179 (257)
59 PRK02155 ppnK NAD(+)/NADH kina 74.2 9.9 0.00021 40.4 7.4 53 188-257 63-117 (291)
60 cd08172 GlyDH-like1 Glycerol d 73.6 7.8 0.00017 41.8 6.6 52 172-228 60-111 (347)
61 cd07766 DHQ_Fe-ADH Dehydroquin 73.1 8.1 0.00018 41.2 6.5 54 173-229 63-116 (332)
62 PRK15454 ethanol dehydrogenase 72.2 9.5 0.00021 42.2 7.0 38 173-210 91-128 (395)
63 cd08179 NADPH_BDH NADPH-depend 71.7 10 0.00023 41.4 7.1 37 173-209 66-102 (375)
64 PLN02727 NAD kinase 71.6 6.8 0.00015 47.6 5.9 53 188-257 743-797 (986)
65 cd08193 HVD 5-hydroxyvalerate 71.6 10 0.00022 41.4 7.0 54 173-226 68-134 (376)
66 cd08186 Fe-ADH8 Iron-containin 71.5 11 0.00024 41.3 7.3 38 173-210 69-106 (383)
67 PF07905 PucR: Purine cataboli 71.5 20 0.00044 32.8 8.0 97 125-225 10-107 (123)
68 cd08170 GlyDH Glycerol dehydro 70.9 8.6 0.00019 41.5 6.2 50 173-227 62-111 (351)
69 PRK00843 egsA NAD(P)-dependent 70.6 10 0.00022 41.1 6.7 53 172-229 71-123 (350)
70 PRK09860 putative alcohol dehy 70.6 12 0.00026 41.2 7.3 54 173-226 73-139 (383)
71 TIGR02638 lactal_redase lactal 70.3 11 0.00025 41.2 7.0 54 173-226 71-139 (379)
72 TIGR03822 AblA_like_2 lysine-2 69.4 1.2E+02 0.0026 32.6 14.4 166 98-276 139-310 (321)
73 cd08182 HEPD Hydroxyethylphosp 69.3 12 0.00026 40.7 6.9 54 173-226 62-132 (367)
74 cd08176 LPO Lactadehyde:propan 69.3 12 0.00027 40.8 7.0 54 173-226 70-136 (377)
75 cd08185 Fe-ADH1 Iron-containin 69.2 12 0.00025 41.0 6.8 38 173-210 68-105 (380)
76 cd08178 AAD_C C-terminal alcoh 69.1 13 0.00028 41.1 7.1 36 173-208 63-98 (398)
77 cd08181 PPD-like 1,3-propanedi 69.1 13 0.00029 40.3 7.2 54 173-226 68-133 (357)
78 cd08173 Gro1PDH Sn-glycerol-1- 69.0 11 0.00024 40.5 6.5 54 173-231 63-116 (339)
79 cd08194 Fe-ADH6 Iron-containin 68.6 13 0.00028 40.6 7.0 54 173-226 65-131 (375)
80 PRK15138 aldehyde reductase; P 66.9 15 0.00032 40.6 7.0 37 173-209 70-106 (387)
81 PRK11914 diacylglycerol kinase 66.4 16 0.00035 38.5 7.0 61 174-244 50-110 (306)
82 TIGR01357 aroB 3-dehydroquinat 66.2 15 0.00032 39.7 6.7 52 173-227 63-117 (344)
83 cd08195 DHQS Dehydroquinate sy 66.1 13 0.00028 40.1 6.3 53 172-227 66-121 (345)
84 PRK01185 ppnK inorganic polyph 65.7 11 0.00024 39.8 5.5 50 188-257 52-103 (271)
85 cd08171 GlyDH-like2 Glycerol d 65.7 13 0.00028 40.1 6.3 50 173-227 63-112 (345)
86 KOG1838 Alpha/beta hydrolase [ 65.6 1.5E+02 0.0032 33.3 14.3 105 97-229 126-233 (409)
87 cd08549 G1PDH_related Glycerol 64.9 32 0.0007 37.0 9.0 52 173-230 66-117 (332)
88 cd08183 Fe-ADH2 Iron-containin 64.4 17 0.00036 39.8 6.8 38 173-210 60-97 (374)
89 COG0061 nadF NAD kinase [Coenz 64.2 16 0.00036 38.5 6.5 57 187-262 54-110 (281)
90 cd06307 PBP1_uncharacterized_s 64.0 98 0.0021 31.1 12.0 59 176-243 47-105 (275)
91 PRK09423 gldA glycerol dehydro 63.8 15 0.00031 40.1 6.2 49 173-226 69-117 (366)
92 PRK13054 lipid kinase; Reviewe 63.5 16 0.00035 38.5 6.3 59 178-243 46-105 (300)
93 cd01391 Periplasmic_Binding_Pr 63.3 1.2E+02 0.0026 29.0 12.0 49 175-228 45-93 (269)
94 PRK07360 FO synthase subunit 2 62.9 1.9E+02 0.004 31.8 14.6 121 93-215 107-243 (371)
95 cd08550 GlyDH-like Glycerol_de 62.9 16 0.00035 39.5 6.3 50 173-227 62-111 (349)
96 PRK10624 L-1,2-propanediol oxi 62.6 20 0.00044 39.3 7.1 54 173-226 72-140 (382)
97 PRK00002 aroB 3-dehydroquinate 62.5 16 0.00035 39.7 6.2 52 173-227 74-128 (358)
98 cd08199 EEVS 2-epi-5-epi-valio 61.7 19 0.0004 39.4 6.5 53 172-227 68-124 (354)
99 cd06281 PBP1_LacI_like_5 Ligan 61.6 1.1E+02 0.0023 30.7 11.7 90 96-228 1-90 (269)
100 PRK13337 putative lipid kinase 61.5 14 0.0003 39.1 5.4 59 178-244 47-105 (304)
101 cd08192 Fe-ADH7 Iron-containin 61.0 23 0.00049 38.6 7.1 38 173-210 66-103 (370)
102 PRK13951 bifunctional shikimat 60.9 10 0.00022 43.2 4.6 154 127-319 172-330 (488)
103 TIGR03405 Phn_Fe-ADH phosphona 59.9 25 0.00055 38.2 7.2 38 173-210 63-102 (355)
104 PF02601 Exonuc_VII_L: Exonucl 59.6 68 0.0015 34.1 10.3 95 90-221 10-111 (319)
105 TIGR01917 gly_red_sel_B glycin 59.0 35 0.00077 38.2 8.0 46 176-223 324-370 (431)
106 cd06305 PBP1_methylthioribose_ 59.0 1.9E+02 0.0042 28.7 19.7 127 96-271 1-127 (273)
107 cd08191 HHD 6-hydroxyhexanoate 58.9 26 0.00056 38.5 7.1 53 174-226 65-130 (386)
108 cd08196 DHQS-like1 Dehydroquin 58.9 23 0.00051 38.5 6.7 109 172-318 57-168 (346)
109 COG1454 EutG Alcohol dehydroge 58.7 25 0.00054 38.9 6.9 38 173-210 71-108 (377)
110 cd01538 PBP1_ABC_xylose_bindin 58.4 55 0.0012 33.5 9.1 103 96-244 1-103 (288)
111 cd08187 BDH Butanol dehydrogen 57.9 26 0.00056 38.4 6.9 54 173-226 71-137 (382)
112 cd08190 HOT Hydroxyacid-oxoaci 57.8 27 0.00058 38.9 7.1 36 173-208 65-100 (414)
113 COG0371 GldA Glycerol dehydrog 57.5 33 0.00072 37.7 7.5 55 173-232 69-123 (360)
114 PRK06186 hypothetical protein; 57.5 13 0.00028 38.3 4.2 59 188-264 53-113 (229)
115 PLN02958 diacylglycerol kinase 57.0 51 0.0011 37.6 9.2 112 115-233 100-215 (481)
116 cd08198 DHQS-like2 Dehydroquin 57.0 24 0.00052 38.9 6.4 49 175-226 83-134 (369)
117 cd08188 Fe-ADH4 Iron-containin 56.8 30 0.00065 37.9 7.2 55 173-227 70-137 (377)
118 cd01575 PBP1_GntR Ligand-bindi 56.2 1.4E+02 0.003 29.5 11.4 83 97-223 2-84 (268)
119 cd08175 G1PDH Glycerol-1-phosp 56.1 23 0.00049 38.3 6.0 49 172-226 65-113 (348)
120 cd06306 PBP1_TorT-like TorT-li 56.1 96 0.0021 31.3 10.3 60 175-243 44-103 (268)
121 PF02401 LYTB: LytB protein; 55.9 12 0.00026 39.8 3.7 52 175-228 197-248 (281)
122 cd08197 DOIS 2-deoxy-scyllo-in 55.4 26 0.00055 38.3 6.3 52 173-227 66-120 (355)
123 PLN02834 3-dehydroquinate synt 55.0 27 0.00058 39.3 6.5 53 172-227 144-199 (433)
124 PRK15458 tagatose 6-phosphate 54.9 2.9E+02 0.0064 31.2 14.2 130 95-260 15-159 (426)
125 PRK13055 putative lipid kinase 54.9 22 0.00048 38.2 5.7 57 179-244 50-107 (334)
126 PF00781 DAGK_cat: Diacylglyce 54.8 20 0.00043 32.9 4.6 52 189-248 55-108 (130)
127 TIGR00147 lipid kinase, YegS/R 54.0 15 0.00032 38.4 4.0 45 183-232 52-98 (293)
128 cd06320 PBP1_allose_binding Pe 52.8 1.4E+02 0.0031 29.8 11.0 91 96-226 1-91 (275)
129 PRK13057 putative lipid kinase 52.8 32 0.00069 36.0 6.3 60 174-244 37-96 (287)
130 PRK02645 ppnK inorganic polyph 52.1 16 0.00034 39.1 3.9 54 188-257 57-113 (305)
131 cd07995 TPK Thiamine pyrophosp 51.4 53 0.0012 32.9 7.4 102 98-210 1-117 (208)
132 TIGR00732 dprA DNA protecting 50.4 2.4E+02 0.0053 28.7 12.1 138 69-229 27-193 (220)
133 cd08169 DHQ-like Dehydroquinat 50.0 43 0.00093 36.3 6.9 53 172-227 64-119 (344)
134 PRK13059 putative lipid kinase 49.9 31 0.00068 36.3 5.7 51 186-244 54-104 (295)
135 COG1570 XseA Exonuclease VII, 49.4 1.2E+02 0.0026 34.3 10.3 95 91-222 132-230 (440)
136 PRK06203 aroB 3-dehydroquinate 48.5 37 0.0008 37.6 6.2 49 175-226 95-146 (389)
137 COG3155 ElbB Uncharacterized p 47.6 90 0.0019 30.8 7.8 62 182-243 79-156 (217)
138 TIGR03702 lip_kinase_YegS lipi 47.4 41 0.00089 35.3 6.1 52 179-232 43-95 (293)
139 cd00537 MTHFR Methylenetetrahy 47.0 73 0.0016 33.2 7.9 92 127-224 29-137 (274)
140 COG1844 Uncharacterized protei 46.8 2.1E+02 0.0046 26.7 9.6 65 191-274 2-66 (125)
141 TIGR00237 xseA exodeoxyribonuc 46.3 1.5E+02 0.0032 33.4 10.7 102 91-229 126-232 (432)
142 TIGR01918 various_sel_PB selen 45.6 89 0.0019 35.2 8.5 47 175-223 323-370 (431)
143 cd06289 PBP1_MalI_like Ligand- 44.4 1.2E+02 0.0025 30.0 8.7 59 175-243 42-100 (268)
144 PRK15408 autoinducer 2-binding 44.0 4.4E+02 0.0094 28.3 15.5 107 94-245 23-129 (336)
145 TIGR02810 agaZ_gatZ D-tagatose 43.8 5.3E+02 0.011 29.2 14.2 139 96-270 12-168 (420)
146 cd02036 MinD Bacterial cell di 43.8 1.1E+02 0.0024 28.6 8.0 84 196-298 9-93 (179)
147 PRK05670 anthranilate synthase 43.4 39 0.00084 33.1 4.9 51 184-249 39-89 (189)
148 PRK13805 bifunctional acetalde 43.0 57 0.0012 39.9 7.2 37 173-209 524-560 (862)
149 PRK00861 putative lipid kinase 42.9 39 0.00085 35.5 5.2 58 178-245 47-104 (300)
150 PRK13849 putative crown gall t 42.8 2E+02 0.0043 29.4 10.1 95 196-299 11-115 (231)
151 PRK03910 D-cysteine desulfhydr 42.4 2.1E+02 0.0046 30.6 10.8 51 177-229 52-102 (331)
152 COG2910 Putative NADH-flavin r 42.2 1E+02 0.0022 31.3 7.4 95 95-203 1-111 (211)
153 PF06995 Phage_P2_GpU: Phage P 41.8 18 0.0004 33.1 2.2 61 522-582 7-70 (121)
154 PF04263 TPK_catalytic: Thiami 41.8 79 0.0017 29.3 6.4 88 126-218 16-118 (123)
155 PRK10586 putative oxidoreducta 41.7 55 0.0012 35.9 6.2 57 173-235 72-128 (362)
156 TIGR03127 RuMP_HxlB 6-phospho 41.6 2.2E+02 0.0048 27.3 9.8 55 173-231 16-70 (179)
157 cd06299 PBP1_LacI_like_13 Liga 41.1 1.6E+02 0.0035 29.1 9.1 100 96-244 1-100 (265)
158 TIGR00238 KamA family protein. 40.9 3.2E+02 0.0069 29.5 11.8 161 97-274 161-331 (331)
159 PRK00286 xseA exodeoxyribonucl 40.7 1.4E+02 0.0031 33.3 9.4 102 92-230 133-238 (438)
160 PLN02327 CTP synthase 40.7 28 0.00061 40.4 3.8 67 177-263 353-421 (557)
161 cd06298 PBP1_CcpA_like Ligand- 40.6 1.2E+02 0.0027 29.9 8.2 69 174-253 41-111 (268)
162 PRK12361 hypothetical protein; 40.5 39 0.00085 38.9 5.1 51 177-232 286-336 (547)
163 cd01391 Periplasmic_Binding_Pr 40.4 1.8E+02 0.0038 27.8 9.0 105 112-226 111-219 (269)
164 smart00046 DAGKc Diacylglycero 40.4 43 0.00094 30.6 4.4 42 188-232 49-93 (124)
165 TIGR03107 glu_aminopep glutamy 40.3 1.3E+02 0.0029 32.9 8.8 111 111-225 184-312 (350)
166 cd08174 G1PDH-like Glycerol-1- 40.1 54 0.0012 35.1 5.8 52 175-231 61-113 (331)
167 cd06315 PBP1_ABC_sugar_binding 40.0 3.2E+02 0.007 27.7 11.3 67 95-199 1-67 (280)
168 TIGR01162 purE phosphoribosyla 39.5 61 0.0013 31.6 5.4 49 172-226 37-85 (156)
169 PF01761 DHQ_synthase: 3-dehyd 38.8 53 0.0012 34.4 5.3 111 171-319 9-122 (260)
170 KOG4180 Predicted kinase [Gene 38.1 25 0.00054 38.1 2.7 72 145-223 45-135 (395)
171 PRK10703 DNA-binding transcrip 38.1 4.8E+02 0.01 27.1 13.3 88 93-223 58-145 (341)
172 PRK05637 anthranilate synthase 37.9 65 0.0014 32.5 5.6 53 182-249 38-90 (208)
173 PF13685 Fe-ADH_2: Iron-contai 37.8 40 0.00086 35.2 4.2 55 173-232 60-114 (250)
174 TIGR00566 trpG_papA glutamine 37.6 50 0.0011 32.5 4.7 54 182-250 37-90 (188)
175 PRK02261 methylaspartate mutas 37.3 3.6E+02 0.0078 25.4 10.7 115 94-226 3-121 (137)
176 TIGR01378 thi_PPkinase thiamin 36.9 2.4E+02 0.0051 28.3 9.4 81 127-210 19-113 (203)
177 cd06310 PBP1_ABC_sugar_binding 36.7 4.4E+02 0.0094 26.2 13.6 88 96-223 1-88 (273)
178 COG1168 MalY Bifunctional PLP- 36.1 3.4E+02 0.0074 30.3 11.0 173 94-289 81-282 (388)
179 PRK12360 4-hydroxy-3-methylbut 36.0 34 0.00073 36.4 3.3 54 175-230 197-250 (281)
180 PRK12390 1-aminocyclopropane-1 35.6 2.8E+02 0.0061 29.8 10.4 44 177-221 55-98 (337)
181 PRK01045 ispH 4-hydroxy-3-meth 35.4 41 0.00089 36.1 3.9 80 175-256 198-279 (298)
182 CHL00101 trpG anthranilate syn 35.4 52 0.0011 32.4 4.4 49 184-247 39-87 (190)
183 COG0414 PanC Panthothenate syn 35.2 54 0.0012 34.8 4.6 48 248-296 6-54 (285)
184 PLN02821 1-hydroxy-2-methyl-2- 35.2 80 0.0017 35.9 6.2 53 175-228 349-401 (460)
185 cd05005 SIS_PHI Hexulose-6-pho 35.1 3.3E+02 0.0071 26.2 9.9 48 173-224 19-66 (179)
186 KOG4435 Predicted lipid kinase 35.1 71 0.0015 35.7 5.6 54 172-228 101-154 (535)
187 TIGR02637 RhaS rhamnose ABC tr 34.8 2.9E+02 0.0063 28.3 10.1 45 175-223 43-87 (302)
188 PF04009 DUF356: Protein of un 34.7 2.3E+02 0.005 26.0 7.9 39 192-232 1-39 (107)
189 cd06300 PBP1_ABC_sugar_binding 34.5 4.7E+02 0.01 26.0 11.4 95 96-227 1-95 (272)
190 PRK12767 carbamoyl phosphate s 34.5 4.9E+02 0.011 27.2 11.9 47 173-222 54-100 (326)
191 TIGR02634 xylF D-xylose ABC tr 34.2 5.4E+02 0.012 26.6 14.5 62 174-243 40-101 (302)
192 PRK15395 methyl-galactoside AB 33.9 3.7E+02 0.008 28.4 10.9 92 93-225 23-114 (330)
193 PF04392 ABC_sub_bind: ABC tra 33.8 5.6E+02 0.012 26.6 12.2 89 96-225 1-89 (294)
194 cd02038 FleN-like FleN is a me 33.5 3.9E+02 0.0084 24.6 10.9 68 195-298 8-75 (139)
195 PF00710 Asparaginase: Asparag 33.0 3.1E+02 0.0068 29.3 10.2 62 173-235 55-118 (313)
196 PF12780 AAA_8: P-loop contain 33.0 2.9E+02 0.0064 29.0 9.7 103 242-358 13-117 (268)
197 cd06308 PBP1_sensor_kinase_lik 32.7 5.1E+02 0.011 25.8 13.7 44 176-223 44-87 (270)
198 PRK06774 para-aminobenzoate sy 32.4 50 0.0011 32.4 3.7 52 182-248 37-88 (191)
199 KOG0066 eIF2-interacting prote 32.2 1.3E+02 0.0029 34.2 7.2 86 241-334 665-759 (807)
200 COG4981 Enoyl reductase domain 31.6 2.7E+02 0.0058 32.6 9.5 86 186-295 121-217 (717)
201 COG0504 PyrG CTP synthase (UTP 31.4 56 0.0012 37.4 4.2 132 142-295 295-438 (533)
202 smart00729 Elp3 Elongator prot 31.3 4.3E+02 0.0093 24.8 10.0 45 173-217 134-182 (216)
203 PRK15052 D-tagatose-1,6-bispho 31.1 8.2E+02 0.018 27.7 14.6 139 96-270 13-168 (421)
204 cd06533 Glyco_transf_WecG_TagA 30.6 1.5E+02 0.0032 28.8 6.6 88 94-197 46-133 (171)
205 PRK10355 xylF D-xylose transpo 30.4 6.8E+02 0.015 26.5 14.2 93 93-227 24-116 (330)
206 cd06319 PBP1_ABC_sugar_binding 30.3 3.9E+02 0.0084 26.5 9.9 26 96-121 1-26 (277)
207 cd06283 PBP1_RegR_EndR_KdgR_li 30.3 3.2E+02 0.007 26.8 9.3 99 97-244 2-100 (267)
208 PF00731 AIRC: AIR carboxylase 30.3 88 0.0019 30.3 4.8 48 172-225 39-86 (150)
209 cd06292 PBP1_LacI_like_10 Liga 30.2 2.5E+02 0.0054 28.0 8.5 86 97-223 2-89 (273)
210 cd06314 PBP1_tmGBP Periplasmic 30.0 3.7E+02 0.008 26.8 9.7 60 175-243 42-101 (271)
211 cd01542 PBP1_TreR_like Ligand- 30.0 3.1E+02 0.0068 26.9 9.1 83 97-223 2-84 (259)
212 TIGR00288 conserved hypothetic 29.9 51 0.0011 32.3 3.2 52 176-230 90-144 (160)
213 PRK05647 purN phosphoribosylgl 29.9 2.1E+02 0.0046 28.7 7.7 18 179-196 71-88 (200)
214 TIGR00215 lpxB lipid-A-disacch 29.8 1.2E+02 0.0025 33.3 6.4 133 100-260 9-146 (385)
215 PRK03359 putative electron tra 29.7 1.3E+02 0.0029 31.5 6.4 53 179-232 71-128 (256)
216 PF02569 Pantoate_ligase: Pant 29.6 83 0.0018 33.5 5.0 39 258-296 15-54 (280)
217 PRK14021 bifunctional shikimat 29.6 1.1E+02 0.0024 35.4 6.4 52 173-227 251-305 (542)
218 cd03822 GT1_ecORF704_like This 29.2 4.1E+02 0.0089 27.0 10.1 112 96-227 1-115 (366)
219 TIGR00676 fadh2 5,10-methylene 28.9 1.9E+02 0.0041 30.3 7.5 91 128-224 30-134 (272)
220 PRK13371 4-hydroxy-3-methylbut 28.8 1.3E+02 0.0028 33.6 6.4 56 174-230 274-329 (387)
221 COG1597 LCB5 Sphingosine kinas 28.6 1.1E+02 0.0025 32.5 5.9 111 128-254 4-116 (301)
222 cd01574 PBP1_LacI Ligand-bindi 28.4 5.8E+02 0.013 25.1 11.5 85 96-223 1-85 (264)
223 COG1609 PurR Transcriptional r 28.3 1.5E+02 0.0032 31.9 6.7 102 93-243 57-158 (333)
224 PF13380 CoA_binding_2: CoA bi 28.2 1.3E+02 0.0029 27.3 5.5 44 173-222 64-107 (116)
225 PLN02335 anthranilate synthase 27.0 90 0.0019 31.7 4.6 49 184-247 58-106 (222)
226 cd06353 PBP1_BmpA_Med_like Per 26.5 5.4E+02 0.012 26.4 10.3 121 93-262 119-239 (258)
227 PRK07591 threonine synthase; V 26.2 1.9E+02 0.0042 32.3 7.4 145 178-337 126-286 (421)
228 cd03411 Ferrochelatase_N Ferro 26.1 2.2E+02 0.0047 27.3 6.8 117 97-224 3-120 (159)
229 TIGR00215 lpxB lipid-A-disacch 25.8 8.5E+02 0.018 26.6 12.2 106 191-298 8-123 (385)
230 KOG2387 CTP synthase (UTP-ammo 25.8 1.3E+02 0.0027 34.3 5.6 71 174-264 351-423 (585)
231 cd01744 GATase1_CPSase Small c 25.7 1.4E+02 0.003 29.0 5.5 50 185-251 36-88 (178)
232 PF00186 DHFR_1: Dihydrofolate 25.7 51 0.0011 32.0 2.4 53 176-236 79-131 (161)
233 PF01936 NYN: NYN domain; Int 25.7 45 0.00097 30.4 1.9 46 180-228 87-132 (146)
234 COG4683 Uncharacterized protei 25.6 43 0.00094 30.7 1.7 56 29-109 36-91 (120)
235 PRK11096 ansB L-asparaginase I 25.4 1.5E+02 0.0032 32.5 6.1 48 173-222 83-132 (347)
236 cd06278 PBP1_LacI_like_2 Ligan 25.4 5.3E+02 0.011 25.3 9.8 55 178-243 44-98 (266)
237 cd08197 DOIS 2-deoxy-scyllo-in 25.3 9.1E+02 0.02 26.3 12.3 104 178-297 12-118 (355)
238 cd06167 LabA_like LabA_like pr 25.2 1.2E+02 0.0025 28.1 4.7 44 178-224 89-132 (149)
239 COG2086 FixA Electron transfer 25.1 2E+02 0.0042 30.4 6.7 56 176-232 67-127 (260)
240 PRK13111 trpA tryptophan synth 25.1 1.8E+02 0.0039 30.4 6.5 49 176-226 105-153 (258)
241 cd06323 PBP1_ribose_binding Pe 24.9 6.6E+02 0.014 24.6 13.9 85 97-223 2-86 (268)
242 PRK06027 purU formyltetrahydro 24.8 3.2E+02 0.0069 29.0 8.4 115 56-200 61-176 (286)
243 PRK12342 hypothetical protein; 24.4 1.8E+02 0.0039 30.5 6.3 52 180-232 69-125 (254)
244 cd03230 ABC_DR_subfamily_A Thi 24.3 2.1E+02 0.0046 27.3 6.4 57 272-333 96-152 (173)
245 TIGR02263 benz_CoA_red_C benzo 24.2 7.3E+02 0.016 27.3 11.4 139 95-252 232-379 (380)
246 PRK10014 DNA-binding transcrip 24.1 8.2E+02 0.018 25.4 12.3 88 93-223 63-150 (342)
247 cd06275 PBP1_PurR Ligand-bindi 24.1 3.4E+02 0.0074 26.8 8.1 84 97-223 2-85 (269)
248 cd02071 MM_CoA_mut_B12_BD meth 23.9 2.8E+02 0.006 25.2 6.8 52 151-203 42-94 (122)
249 PRK12815 carB carbamoyl phosph 23.5 3E+02 0.0064 34.8 9.0 108 92-224 5-119 (1068)
250 PF04405 ScdA_N: Domain of Unk 23.4 86 0.0019 25.3 2.9 27 177-205 12-38 (56)
251 PRK13538 cytochrome c biogenes 23.4 2.3E+02 0.0051 27.7 6.7 59 271-334 129-187 (204)
252 PRK10423 transcriptional repre 23.3 8.2E+02 0.018 25.1 11.6 70 93-200 55-124 (327)
253 TIGR00655 PurU formyltetrahydr 23.2 4.5E+02 0.0098 27.9 9.1 19 178-196 150-168 (280)
254 PLN02735 carbamoyl-phosphate s 22.9 4.7E+02 0.01 33.2 10.5 47 177-223 638-692 (1102)
255 cd06273 PBP1_GntR_like_1 This 22.8 4.3E+02 0.0093 26.1 8.6 43 175-223 42-84 (268)
256 cd01983 Fer4_NifH The Fer4_Nif 22.7 4.1E+02 0.0089 21.4 9.5 27 196-222 8-34 (99)
257 cd00411 Asparaginase Asparagin 22.6 2.5E+02 0.0054 30.3 7.2 49 173-223 61-111 (323)
258 KOG3857 Alcohol dehydrogenase, 22.4 1.7E+02 0.0037 32.3 5.7 38 173-210 112-149 (465)
259 cd02071 MM_CoA_mut_B12_BD meth 22.4 1.8E+02 0.0038 26.5 5.2 75 141-220 8-84 (122)
260 PF00532 Peripla_BP_1: Peripla 22.2 1.5E+02 0.0032 30.8 5.2 100 95-243 2-101 (279)
261 TIGR00216 ispH_lytB (E)-4-hydr 22.1 1.1E+02 0.0024 32.6 4.2 52 175-228 196-247 (280)
262 cd02072 Glm_B12_BD B12 binding 22.1 2.5E+02 0.0055 26.4 6.2 49 150-199 41-90 (128)
263 TIGR02417 fruct_sucro_rep D-fr 21.9 8.8E+02 0.019 25.0 12.9 103 94-244 60-162 (327)
264 cd06342 PBP1_ABC_LIVBP_like Ty 21.8 4.2E+02 0.0091 27.3 8.6 63 155-222 159-221 (334)
265 PRK13010 purU formyltetrahydro 21.6 4E+02 0.0087 28.4 8.4 86 92-196 91-177 (289)
266 TIGR03551 F420_cofH 7,8-dideme 21.5 6.2E+02 0.014 27.2 10.0 118 94-215 87-221 (343)
267 cd06282 PBP1_GntR_like_2 Ligan 21.5 7.7E+02 0.017 24.1 13.4 85 96-223 1-85 (266)
268 PF06414 Zeta_toxin: Zeta toxi 21.4 5.5E+02 0.012 25.1 8.9 112 92-224 11-128 (199)
269 PF00532 Peripla_BP_1: Peripla 21.4 8.6E+02 0.019 25.1 10.7 75 148-223 68-157 (279)
270 PF00289 CPSase_L_chain: Carba 21.4 84 0.0018 28.6 2.8 44 176-223 62-105 (110)
271 PRK08007 para-aminobenzoate sy 21.3 1.2E+02 0.0025 29.9 4.0 53 182-249 37-89 (187)
272 PF07722 Peptidase_C26: Peptid 21.2 3.4E+02 0.0074 27.4 7.5 51 140-198 18-68 (217)
273 TIGR01501 MthylAspMutase methy 21.1 3.5E+02 0.0075 25.7 6.9 68 147-215 39-110 (134)
274 PRK10481 hypothetical protein; 21.1 9.2E+02 0.02 24.9 10.9 147 56-221 40-210 (224)
275 cd06277 PBP1_LacI_like_1 Ligan 20.9 2.4E+02 0.0052 28.1 6.3 46 176-232 46-91 (268)
276 PRK00139 murE UDP-N-acetylmura 20.9 8E+02 0.017 27.5 11.1 110 174-297 77-192 (460)
277 cd06317 PBP1_ABC_sugar_binding 20.8 8.1E+02 0.018 24.1 12.4 85 97-223 2-87 (275)
278 PHA02728 uncharacterized prote 20.7 52 0.0011 30.9 1.3 14 222-235 43-56 (184)
279 PRK09432 metF 5,10-methylenete 20.6 2.6E+02 0.0057 29.8 6.7 81 111-199 39-121 (296)
280 cd03255 ABC_MJ0796_Lo1CDE_FtsE 20.5 2.7E+02 0.0058 27.4 6.5 59 272-334 141-199 (218)
281 TIGR01166 cbiO cobalt transpor 20.5 3E+02 0.0065 26.5 6.7 59 270-333 126-184 (190)
282 COG1122 CbiO ABC-type cobalt t 20.3 2.9E+02 0.0063 28.5 6.8 88 225-319 95-183 (235)
283 PRK05294 carB carbamoyl phosph 20.3 5.3E+02 0.011 32.5 10.3 47 177-229 618-666 (1066)
284 cd06335 PBP1_ABC_ligand_bindin 20.2 5.9E+02 0.013 26.8 9.4 67 151-222 158-224 (347)
285 PF03808 Glyco_tran_WecB: Glyc 20.2 4E+02 0.0086 25.8 7.4 106 109-228 33-138 (172)
286 COG0685 MetF 5,10-methylenetet 20.1 2.6E+02 0.0056 29.8 6.5 71 143-215 59-140 (291)
No 1
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=4.3e-162 Score=1348.59 Aligned_cols=597 Identities=87% Similarity=1.338 Sum_probs=573.6
Q ss_pred hcccCCCccCcCCCceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecCCCC
Q 006961 27 LLQMFSFNANMQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQS 106 (623)
Q Consensus 27 ~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~a 106 (623)
+..+|+||+.|++..++++.|++++++++.++++|+++||||||+|.++|.++....|+++.++.+..+|||||||||||
T Consensus 12 ~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rIgIv~sGG~A 91 (610)
T PLN03028 12 SLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQS 91 (610)
T ss_pred HhCCCCCChhhCCCcEEEeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCcccEEEEEccCCCC
Confidence 44799999999987789999999999976677999999999999999999985433478888877778999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHH
Q 006961 107 PGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKN 186 (623)
Q Consensus 107 PG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~ 186 (623)
|||||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|.++++++++++++++|++
T Consensus 92 PG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~ 171 (610)
T PLN03028 92 PGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEA 171 (610)
T ss_pred ccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCc
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKY 266 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~ 266 (623)
++||+||+||||||+++|++|+|||++++++++||||||||||||+++.+|+|||||||+++++++|+||++||.|+++|
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni~~dA~S~~~~ 251 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKY 251 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCe
Confidence 99999999999999999999999999999999999999999999998778899999999999999999999999999889
Q ss_pred eEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHH
Q 006961 267 YYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYAL 346 (623)
Q Consensus 267 ~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~l 346 (623)
|||||+|||+||||||+||||+|||+||||||++.+++||.++++.|++.|++|+++||+|||||||||+++++|+++.|
T Consensus 252 ~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGlie~ipe~~~l 331 (610)
T PLN03028 252 YYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGLIESIPEVYAL 331 (610)
T ss_pred EEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCccccCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhccccCC
Q 006961 347 LKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 426 (623)
Q Consensus 347 i~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g 426 (623)
|+|+++++.++...+++.++||||+++||++||++||+||+.++|+|||+|+++|+||++|++||+++|++|+++|+|+|
T Consensus 332 i~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL~~r~~~g~~~~ 411 (610)
T PLN03028 332 LQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKG 411 (610)
T ss_pred HHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999877666778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchHhhhhhccccCCCC
Q 006961 427 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPG 506 (623)
Q Consensus 427 ~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~g~~ 506 (623)
.+|++++|+|||+|||+.||+||++|||.||+.|++++.+|.||||++|+|++.++++|+++++||++|||+||+.+|++
T Consensus 412 ~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~m~~~~~~~~~~ 491 (610)
T PLN03028 412 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMMSVKRWSRGPG 491 (610)
T ss_pred ccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHHhhHHhhccccc
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999445766
Q ss_pred CCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCcccCCCcccccCCCCCCCcceeEecccchhhhHHHHHHHHHHhcc
Q 006961 507 ASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRT 586 (623)
Q Consensus 507 ~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~~~~~y~~~~~~~~~~~~~~~~ 586 (623)
.+.+++|+|+|++|||+|++|++|+++|++|+++|+|++||||||+||.+|++++||.+|+++|++||+++++|+++||+
T Consensus 492 ~~~~~~p~i~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~~~~~~~~~~~~~~~~~~ 571 (610)
T PLN03028 492 ASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGADAKPITLCVEDQDYMGRIKKLQEYLDKVRT 571 (610)
T ss_pred ccccCCceeeccccCCCcHHHHHHHHHHHHhhccCcCcCCCCccccCCcccCCceEeehhhhhhHHHHHHHHHHHHHHHh
Confidence 66689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHhhccCC--CCCCC
Q 006961 587 IVKPGCSQEVLKAALSVMASVTEVLSAMSASG--GQTTL 623 (623)
Q Consensus 587 ~~~~g~~~~~l~~a~~~~~~~~~~~~~~~~~~--~~~~~ 623 (623)
+|+||||+|+||+|+++|+||+|+|++||+|+ ++||+
T Consensus 572 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 610 (610)
T PLN03028 572 IVKPGCSQEVLKAALSSMASVTDVLTVMSSPSNRGLTPL 610 (610)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 99999999999999999999999999999999 88775
No 2
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=2.5e-144 Score=1197.95 Aligned_cols=531 Identities=42% Similarity=0.733 Sum_probs=508.1
Q ss_pred HHhhcccCCCccCcCCCceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecC
Q 006961 24 AIYLLQMFSFNANMQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCG 103 (623)
Q Consensus 24 ~~~~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sG 103 (623)
..-+..+|+||+.|+++ +++.+|++++++ .++++|+++||||||+|.++|.+... + ......++||||||||
T Consensus 34 ~~r~~~~p~lp~~l~~~-~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~--~---~~~~~~~~~IGIv~sG 105 (568)
T PLN02251 34 SSRIDHALPLPSVLKGP-FKIVDGPPSSAA--GNPEEIAKLFPNLFGQPSVMLVPSQA--D---ALSSDQKLKIGVVLSG 105 (568)
T ss_pred HHHHhCCCCCChhhcCc-eEEEecCccccc--CCHHHHHHhChHhhCCceEEEeeccC--c---cccccccceEEEECcC
Confidence 33445899999999985 999999999888 88899999999999999999998431 1 1222456899999999
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHH
Q 006961 104 RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTA 183 (623)
Q Consensus 104 G~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~ 183 (623)
||||||||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|+++++++++++++++
T Consensus 106 G~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~ 185 (568)
T PLN02251 106 GQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEET 185 (568)
T ss_pred CCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhc
Q 006961 184 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSA 263 (623)
Q Consensus 184 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~ 263 (623)
|++++||+||+||||||+++|+.|+|||+++|++++||||||||||||+++|+|+|||||||+++++++|+||++||.|+
T Consensus 186 l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S~ 265 (568)
T PLN02251 186 ATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARST 265 (568)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhH
Q 006961 264 EKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEV 343 (623)
Q Consensus 264 ~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~ 343 (623)
+|||||||+|||+||||||+||||+|||+|||||+++.++++|++|++.|++.|++|+.+||+|||||||||+++++|++
T Consensus 266 ~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie~ipe~ 345 (568)
T PLN02251 266 GKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIPEV 345 (568)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCC--ccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhc
Q 006961 344 YALLKEIHSLLRQGVPV--DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKE 421 (623)
Q Consensus 344 ~~li~el~~~~~~~~~~--~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~ 421 (623)
+.||+|++++++++... ..+.++||+|++++|++||++|++||+.+||+|||+|+++|+||++|++||+++|++|+.+
T Consensus 346 ~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~~rk~~ 425 (568)
T PLN02251 346 QHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQE 425 (568)
T ss_pred HHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHhhhccc
Confidence 99999999998776432 4678899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchHhhhhhccc
Q 006961 422 GTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRW 501 (623)
Q Consensus 422 g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~ 501 (623)
++|+|+ |++++|+|||+|||+.||+||+.|||.||+.|+.++.+|.||||++|+|+..++++|+++++||++|||+||
T Consensus 426 ~~~~~~-f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~mn~e~- 503 (568)
T PLN02251 426 GSYKGH-FKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMDVER- 503 (568)
T ss_pred cccccc-cceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHhhhhh-
Confidence 999997 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCcccCCCcccccCCCCCCCcceeEecccc
Q 006961 502 SQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRD 569 (623)
Q Consensus 502 r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~~~~~ 569 (623)
|+| +.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.+|+++
T Consensus 504 ~~~-----~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~tl~~e~~~ 566 (568)
T PLN02251 504 RHG-----KFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFSGPGSDATNHTLKLELGA 566 (568)
T ss_pred hCC-----CcCccccccccCCCCHHHHHHHHHHHHhhhcCcCcCCCCccccCcccCCCceEEEecccC
Confidence 888 899999999999999999999999999999999999999999999999999999999874
No 3
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=4.9e-141 Score=1169.54 Aligned_cols=525 Identities=41% Similarity=0.715 Sum_probs=502.5
Q ss_pred hcccCCCccCcCCC--ceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecCC
Q 006961 27 LLQMFSFNANMQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGR 104 (623)
Q Consensus 27 ~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG 104 (623)
...+|+||++|++. .+++..|++++++ .|+++|+++||||||+|.++|.++.. . ...+..+||||++|||
T Consensus 11 ~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~fp~~~~~p~~~~~~~~~---~---~~~~~~~~IgIl~SGG 82 (550)
T cd00765 11 INYTPKLPSVLKGDFNNIKIVEGPATSAA--GDPDALAKLFPGTYGQPSVAFVPDQD---A---PSSAPKLKIGIVLSGG 82 (550)
T ss_pred HhcCCCCChhhcCCccceEEeecCccccc--CCHHHHHHhChhhhCCcceEEeecCC---c---ccCCCCCEEEEECCCC
Confidence 44799999999984 6899999999988 88899999999999999999999642 1 1224568999999999
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHH
Q 006961 105 QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTAC 184 (623)
Q Consensus 105 ~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l 184 (623)
||||+||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|.++++++++++++++|
T Consensus 83 ~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~l 162 (550)
T cd00765 83 QAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETA 162 (550)
T ss_pred CcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999889999999999999999999999
Q ss_pred HHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhcc
Q 006961 185 KNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE 264 (623)
Q Consensus 185 ~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~ 264 (623)
++++||+||+||||||+++|+.|+|||+++|++++||||||||||||+++++|+|||||||+++++++|+||++|+.|++
T Consensus 163 ~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~~ 242 (550)
T cd00765 163 KKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTG 242 (550)
T ss_pred HHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHH
Q 006961 265 KYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVY 344 (623)
Q Consensus 265 k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~ 344 (623)
+||||||+|||+||||||+||||+|||+|||||++.+++++|++++++|++.|++|+.+||+|||||||||+++++|+++
T Consensus 243 ~~~~~VEvMGR~aG~LAl~~aLat~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ipe~~ 322 (550)
T cd00765 243 KYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIPEVK 322 (550)
T ss_pred CcEEEEEeCCCchHHHHHHHHHhcCCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCC--CccccccCChhhhhhhccCh---------hHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 345 ALLKEIHSLLRQGVP--VDNISSQLSPWASALFEFLP---------PFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 345 ~li~el~~~~~~~~~--~~~~~~~ls~~s~~lf~~lp---------~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
.||+|++++++++.. .+.+.++||+|++++|.+|| ++|++||+.+||+|||+|+++|+||++|++||++
T Consensus 323 ~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV~~ 402 (550)
T cd00765 323 ELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMVET 402 (550)
T ss_pred HHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHHHH
Confidence 999999999876643 25578899999999988777 9999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchH
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 493 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~ 493 (623)
+|++++.+|+|+|+ |+.++|+|||+|||+.||+||+.|||.||+.|++++.+|.||||++|+|+..++++|+++++||+
T Consensus 403 ~L~~~k~~g~y~~~-f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vPl~ 481 (550)
T cd00765 403 RLEKMKQAGAYKGQ-FMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPLT 481 (550)
T ss_pred HHHHhhhccccccc-ccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecccHH
Confidence 99999999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCcccCCCcccccCCCC--CCCcceeEec
Q 006961 494 SMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA--DAKAVTLCVE 566 (623)
Q Consensus 494 ~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~--~~~~~tl~~~ 566 (623)
+|||+|| |.| +.+|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++++||.||
T Consensus 482 ~~mn~e~-~~g-----~~~pvi~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e 550 (550)
T cd00765 482 MLMNMER-RHG-----KFKPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGPSEGSDELSHTLLLE 550 (550)
T ss_pred HHhcccc-ccC-----CcceecccceeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeccCccccccCCceeeecC
Confidence 9999999 999 89999999999999999999999999999999999999999999976 9999999987
No 4
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=1.3e-140 Score=1167.97 Aligned_cols=525 Identities=52% Similarity=0.873 Sum_probs=503.1
Q ss_pred cccCCCccCcCCC--ceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecCCC
Q 006961 28 LQMFSFNANMQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQ 105 (623)
Q Consensus 28 ~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~ 105 (623)
..+|+||+.|++. .++++.|++++++ .++++|+++||||||+|.++|.++.+. ...+.++||||++||||
T Consensus 7 ~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~~------~~~~~~~rIgIl~sGG~ 78 (539)
T TIGR02477 7 QYVPKLPKVLQGDTANISLEDGEPTAAV--ADQEELKELFPNTYGLPIITFEPGEAS------PDEHQPLKIGVILSGGQ 78 (539)
T ss_pred hCCCCCChHHcCCCcceEEeccCcccCC--CCHHHHHHhChHhhCCccEEEecCCCC------cccccceEEEEECCCCC
Confidence 4789999999984 5888999999888 889999999999999999999986531 12345689999999999
Q ss_pred CCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHH
Q 006961 106 SPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACK 185 (623)
Q Consensus 106 aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~ 185 (623)
||||||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|.++.+++++++++++|+
T Consensus 79 aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~l~ 158 (539)
T TIGR02477 79 APGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAK 158 (539)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999998899999999999999999999999
Q ss_pred HcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccC
Q 006961 186 NLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEK 265 (623)
Q Consensus 186 ~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k 265 (623)
+++||+||+||||||+++|+.|+|||+++|++++||||||||||||++..+|+|||||||+++++++|+||++|+.|+++
T Consensus 159 ~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~~~ 238 (539)
T TIGR02477 159 KLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKK 238 (539)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999866779999999999999999999999999999
Q ss_pred ceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHH
Q 006961 266 YYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYA 345 (623)
Q Consensus 266 ~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~ 345 (623)
||||||||||+||||||+||||+|||+|||||++++++++|++++++|++.|++|+.+||+|||||||||+++++|+++.
T Consensus 239 ~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe~~~ 318 (539)
T TIGR02477 239 YWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEFIPEVQA 318 (539)
T ss_pred cEEEEEECCCCcHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhhcchHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCC----ccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhc
Q 006961 346 LLKEIHSLLRQGVPV----DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKE 421 (623)
Q Consensus 346 li~el~~~~~~~~~~----~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~ 421 (623)
||+|+|++++++... +.+.++||+|+++||++||.+|++||+.+||+|||+++++|+||++|+++|+++|++++++
T Consensus 319 Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l~~~~~~ 398 (539)
T TIGR02477 319 LIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKRKKE 398 (539)
T ss_pred HHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHHHhhhcc
Confidence 999999999777555 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchHhhhhhccc
Q 006961 422 GTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRW 501 (623)
Q Consensus 422 g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~ 501 (623)
|+|+++ |..++|+|||+|||+.||+||+.|||.||+.|++++++|.||||++|+|+..++++|++.++||++|||+||
T Consensus 399 ~~~k~~-f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e~- 476 (539)
T TIGR02477 399 GEYKGK-FSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNMER- 476 (539)
T ss_pred ccceeE-EeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhChhh-
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCcccCCCcccccCCC--CCCCcceeEecc
Q 006961 502 SQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPG--ADAKAVTLCVED 567 (623)
Q Consensus 502 r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~--~~~~~~tl~~~~ 567 (623)
++| +++|+|++++|||+|++|++|+++|++|+++|+||+||||||+||. +|++++||.+|+
T Consensus 477 ~~g-----~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~~~tl~~e~ 539 (539)
T TIGR02477 477 RHG-----EMKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEVCDQPTLTLLLEQ 539 (539)
T ss_pred hCC-----CCCccceeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCceEEEecC
Confidence 888 8999999999999999999999999999999999999999999999 499999999985
No 5
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.3e-141 Score=1239.38 Aligned_cols=578 Identities=36% Similarity=0.612 Sum_probs=519.7
Q ss_pred ccCCCccCcCCCceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeE-ecCccCCCCcccccCCCceEEEEEecCCCCC
Q 006961 29 QMFSFNANMQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHF-LRATAKVPDAQIITEHPAIRVGIVFCGRQSP 107 (623)
Q Consensus 29 ~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aP 107 (623)
.+|++|..+.....++..+....+.|+.....+...|||+... .+| .... . -+......+..+||||||||||||
T Consensus 774 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~~~~~-~-~~~~~~~~~~~~rIGVLtSGGdAP 849 (1419)
T PTZ00287 774 NKLELPELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSYE--NKFQIQEI-F-HDKYATPISFEIKIGIVFLSRQAP 849 (1419)
T ss_pred cCccchhhhhhhHhhcccceeeecCChhhhhhhhhcccchhhh--hhhhHhhh-h-ccccccCCcCCcEEEEECcCCCcH
Confidence 5678888765432334433223333444578899999997542 222 1111 0 111112334668999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcC-CCCCChHHHHHHHHHHHH
Q 006961 108 GGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQIRTTEQVNAALTACKN 186 (623)
Q Consensus 108 G~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R-~k~~t~e~~~~i~~~l~~ 186 (623)
||||||+|++++++..+ ++ ++||. ||.||+++++++||.+.|+.|+|+|||+++||+| .+++++|++++++++|++
T Consensus 850 G~NnVIrgvv~~a~~~~-g~-~~gf~-G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~t~e~~~ka~~~lk~ 926 (1419)
T PTZ00287 850 GAMNVLCGLYRRLKLLK-GV-CIAFY-GLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFDKENRNKVCETVTN 926 (1419)
T ss_pred hHHHHHHHHHHHHHHhC-Ce-EEEEe-CchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999987543 44 57766 9999999999999999999999999997779999 568899999999999999
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCc
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKY 266 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~ 266 (623)
++||+|||||||||+++|+.|+|||+++|++++||||||||||||++..+|+|||||||+++++++|+||++||.|++||
T Consensus 927 l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~seaI~nL~~dA~S~~ry 1006 (1419)
T PTZ00287 927 LQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVLTDAVSMPKY 1006 (1419)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999667799999999999999999999999999999
Q ss_pred eEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHH
Q 006961 267 YYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYAL 346 (623)
Q Consensus 267 ~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~l 346 (623)
|||||||||+||||||+||||||||+|||||++..+++||.++++.|++.|++|+++||+||||||||||++++|+++.|
T Consensus 1007 ~~fVEVMGR~aGhLALe~aLatgAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIVlV~EGLie~Ipe~k~L 1086 (1419)
T PTZ00287 1007 WHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVLIPDALLMHLPHMKIL 1086 (1419)
T ss_pred EEEEEECCCchHHHHHHHHHhcCCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEEEEcCcHHHhCHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc-----------C----------C------------C----CccccccCChhhhhhhccChhHHHhhhhcC
Q 006961 347 LKEIHSLLRQ-----------G----------V------------P----VDNISSQLSPWASALFEFLPPFIKKQLLLQ 389 (623)
Q Consensus 347 i~el~~~~~~-----------~----------~------------~----~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~ 389 (623)
|+|+++++++ + . . .+++.++||||+++||++||.+||+||+ +
T Consensus 1087 i~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~lf~slP~~i~~qLl-~ 1165 (1419)
T PTZ00287 1087 LSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLALLKTFPQFIIKELL-H 1165 (1419)
T ss_pred HHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHHHHHhccHHHHHHHh-c
Confidence 9999999853 1 0 0 1346789999999999999999999998 9
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 006961 390 PESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN 469 (623)
Q Consensus 390 rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~t 469 (623)
||+ ||+|+++|+||+||++||+++|++|+++|+|+|+ |++++|||||++||+.||+|||+|||.||+.|+.++.+|+|
T Consensus 1166 rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~-F~~~~HffGYegR~~~PS~FD~~y~Y~LG~~A~~li~~g~t 1243 (1419)
T PTZ00287 1166 VDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGS-FMGLTHFFGYQGRSSLPSEFDCKLAYSYGHAASIVIESGLT 1243 (1419)
T ss_pred cCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccc-cceeeeccccccccCCCCccchHHHHHHHHHHHHHHhCCCe
Confidence 999 9999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCceeEEecchHhhhhhccccC-CC----CCCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCccc
Q 006961 470 GYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQ-NP----GASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYR 544 (623)
Q Consensus 470 G~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~-g~----~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~ 544 (623)
|||++|+|+..++.+|+++++||++||++|+ |+ ++ ++..+++|||+|++|||+|++||.|+++|++|+++|+|+
T Consensus 1244 Gym~~i~nl~~~~~~W~~~giPlt~mm~ve~-r~~~~k~~~~~~g~~~pvI~k~~Vdl~g~~fk~~~~~r~~W~~~d~y~ 1322 (1419)
T PTZ00287 1244 GYIVSIRGLCGNIKDWKLFAIPFISLMKILP-RGQGSKYLKSASKGDLPVIPSAPVDLNGKAYRSLKIALQKWQMEDRFC 1322 (1419)
T ss_pred EEEEEecCccCCHHHeEEccchhhhhhchhh-hccccccccccccCccccccccccCCCCHHHHHHHHHHHhhhhcCcCC
Confidence 9999999999999999999999999999999 75 32 233488999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCcceeEecccchhhhHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHH-------HHHHHhhccC
Q 006961 545 NPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASV-------TEVLSAMSAS 617 (623)
Q Consensus 545 ~pGpiQ~~g~~~~~~~~tl~~~~~~y~~~~~~~~~~~~~~~~~~~~g~~~~~l~~a~~~~~~~-------~~~~~~~~~~ 617 (623)
+||||||+||.+|++++||.+|+++|++||+++++|+++||++|+|||++|+||+|+.+|+++ .++++.|..-
T Consensus 1323 ~PGPiQ~~g~~~~~~~~tL~~e~~~y~~~l~~~~~~~~~~~~~c~fg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1402 (1419)
T PTZ00287 1323 NPGPIQFEGNASNYYNRILFEEQSEYFEMLRYVECYANILKDTCRFGVSADYLKNVFVQLCGMLVLAYKPNDILSNMPYI 1402 (1419)
T ss_pred CCCCccccCccccCcCeeeeHhHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhheeeeeccchHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999998 7788877653
No 6
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=4.2e-140 Score=1165.86 Aligned_cols=527 Identities=46% Similarity=0.790 Sum_probs=504.1
Q ss_pred hhcccCCCccCcCCC--ceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecC
Q 006961 26 YLLQMFSFNANMQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCG 103 (623)
Q Consensus 26 ~~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sG 103 (623)
-+..+|+||+.|++. .++++++++++++ .++++|+++||||||+|.++|.++.. .....+||||++||
T Consensus 10 r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~--------~~~~~~~IgIl~sG 79 (555)
T PRK07085 10 RLKYRPKLPKLLQNDPGLIKIVDGEFTESV--ADQDELAELFPNTYGLPYVTFVKGSE--------SSSKPLKVGVILSG 79 (555)
T ss_pred HHhCCCCCCHHHhCCCCCceEeecCCcccc--CCHHHHHHhChHhhCCccEEEEeCCC--------CcccceEEEEECCC
Confidence 345799999999873 6899999999988 77899999999999999999999752 12346899999999
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHH
Q 006961 104 RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTA 183 (623)
Q Consensus 104 G~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~ 183 (623)
||||||||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|+++++++++++++++
T Consensus 80 G~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~~ 159 (555)
T PRK07085 80 GQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLET 159 (555)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhc
Q 006961 184 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSA 263 (623)
Q Consensus 184 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~ 263 (623)
|++++||+||+||||||+++|+.|+|||++++++++||||||||||||+++.+|+|||||||+++++++|+||++||.|+
T Consensus 160 l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s~ 239 (555)
T PRK07085 160 VKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSA 239 (555)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhH
Q 006961 264 EKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEV 343 (623)
Q Consensus 264 ~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~ 343 (623)
++||||||+|||+||||||+||||+|||+|||||++++++++|++++++|++.|++|+.+||+|||||||||+++++|++
T Consensus 240 ~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe~ 319 (555)
T PRK07085 240 KKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIPEM 319 (555)
T ss_pred CCcEEEEEECCCChHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCC----------CccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 344 YALLKEIHSLLRQGVP----------VDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 344 ~~li~el~~~~~~~~~----------~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
+.||+|+|+++++... .+++.++||+|+++||++||.+|++||+.+||+|||+|+++|+||++|+++|++
T Consensus 320 ~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV~~ 399 (555)
T PRK07085 320 KSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVKK 399 (555)
T ss_pred HHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHHHH
Confidence 9999999999865421 246789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchH
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 493 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~ 493 (623)
+|++++.+|+|+++ |++++|+|||+|||+.||+||+.|||.||+.|++++++|+||||++|+|+..++++|++.++||+
T Consensus 400 ~l~~~k~~g~y~~~-f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~ 478 (555)
T PRK07085 400 ELEKLKPEGKYKGP-FSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPLT 478 (555)
T ss_pred HHHHhhcccccccc-eeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHH
Confidence 99999999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCcccCCCcccccCCCC--CCCcceeEecccc
Q 006961 494 SMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA--DAKAVTLCVEDRD 569 (623)
Q Consensus 494 ~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~--~~~~~tl~~~~~~ 569 (623)
+|||+|| |+| +++|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++++||.||+++
T Consensus 479 ~~~n~e~-~~g-----~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~~~ 550 (555)
T PRK07085 479 MMMNMER-RHG-----KEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGPEELCDQRTLTLLLELNK 550 (555)
T ss_pred HHhcHHh-hCC-----CCCceeeeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCCceEEecCCC
Confidence 9999999 999 99999999999999999999999999999999999999999999975 9999999999874
No 7
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=3.5e-132 Score=1155.13 Aligned_cols=526 Identities=36% Similarity=0.623 Sum_probs=498.1
Q ss_pred hcccCCCccCcCCCceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecCCCC
Q 006961 27 LLQMFSFNANMQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQS 106 (623)
Q Consensus 27 ~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~a 106 (623)
...+|+||+.|++. +++..|++++++...++++|+++||||||+|.++|.++.. .+ ........+|||||||||||
T Consensus 39 ~~~~p~lp~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~-~~--~~~~~~~~krIGILtSGGdA 114 (1328)
T PTZ00468 39 RRWEPCLPHILRSP-LSIKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISD-GS--SSWKKFPARRIGVVLSGGQA 114 (1328)
T ss_pred HhcCCCCChHhcCc-eEEeecCCcccccCcchHHHHHhCccccCCcceEEeecCC-Cc--cccccccCCEEEEECcCCCc
Confidence 34789999999985 9999999999886566799999999999999999998531 00 01111134899999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHH
Q 006961 107 PGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKN 186 (623)
Q Consensus 107 PG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~ 186 (623)
|||||||+|++++++..+++++||||++||+||+++++++|+++.|+.|+|+|||++|||+|.++++++++++++++|++
T Consensus 115 PG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~le~lkk 194 (1328)
T PTZ00468 115 SGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRASLEICEK 194 (1328)
T ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCc
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKY 266 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~ 266 (623)
++||+||+||||||+++|++|+|||+++|++++||||||||||||+++.+|+|||||||+++++++|++++.||.|+++|
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A~S~~~r 274 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYG 274 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCe
Confidence 99999999999999999999999999999999999999999999999878899999999999999999999999998889
Q ss_pred eEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHH
Q 006961 267 YYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYAL 346 (623)
Q Consensus 267 ~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~l 346 (623)
|||||+|||+||||||+||||+|||+|||||+++.++++|.++++.|++.|.+|+++||+|||||||||+++++|+++.|
T Consensus 275 v~~VEVMGR~AGhLAL~~ALAtganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGliefIpe~~~L 354 (1328)
T PTZ00468 275 YYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEFIPEFETL 354 (1328)
T ss_pred EEEEEeCCcchHHHHHHHHHhcCCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhccccCC
Q 006961 347 LKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 426 (623)
Q Consensus 347 i~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g 426 (623)
|+|+|++++.+...+.+.++||+|++++|++||++|++||+.+||+|||+|+++|+||++|+++|+++|++++++ |.
T Consensus 355 i~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~~~~~--~~- 431 (1328)
T PTZ00468 355 IKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVKKD--YI- 431 (1328)
T ss_pred HHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHHHHhhcc--cc-
Confidence 999999998877778899999999999999999999999999999999999999999999999999999999775 44
Q ss_pred ccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchHhhhhhccccCCCC
Q 006961 427 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPG 506 (623)
Q Consensus 427 ~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~g~~ 506 (623)
+|.+++|+|||+|||+.||+||+.|||.||+.|++++.+|+||||++|+|+..++++|+++++||++|||+|+ |+|
T Consensus 432 -~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn~E~-r~g-- 507 (1328)
T PTZ00468 432 -LDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNIEL-RKG-- 507 (1328)
T ss_pred -cCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHhhHHh-hCC--
Confidence 3889999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCcccCCCcccccCCCCCCCcceeEec
Q 006961 507 ASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVE 566 (623)
Q Consensus 507 ~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~~ 566 (623)
+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.++.+++++...
T Consensus 508 ---~~~pvI~k~~V~l~g~~f~~~~~~r~~w~~~d~Y~~pGPiQ~~gp~~~~~~~~~~~~ 564 (1328)
T PTZ00468 508 ---KSVPVIKKYLVDLKGQSYLAYCQVRSEWKLNDYYRNPGPIQFDGPNSGITNYMISPP 564 (1328)
T ss_pred ---CccceeeecccCCCcHHHHHHHHHHHHhhhcCcccCCCCeeeccCcccCcceeccCc
Confidence 899999999999999999999999999999999999999999999999988887765
No 8
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1.2e-131 Score=1150.66 Aligned_cols=576 Identities=26% Similarity=0.434 Sum_probs=505.6
Q ss_pred ccCCCccCcCCCceeeecCCCcccCCC---CChhHHhhhCCCcCCCCc---eeEecCccCCCCc--------ccccC--C
Q 006961 29 QMFSFNANMQGTTVRVEFGDSTTTADP---ADTHSISRSFPHTYGQPL---AHFLRATAKVPDA--------QIITE--H 92 (623)
Q Consensus 29 ~~p~lp~~l~~~~~~~~~~~~~~~~~~---~~~~~i~~~fp~~~~~~~---~~~~~~~~~~~~~--------~~~~~--~ 92 (623)
+.|++|..|.....+ ......+.|+ .....|.+.+|+...... +.++...=..|-. ...+. .
T Consensus 596 ~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 673 (1328)
T PTZ00468 596 DDLKIPKILLSTASK--FNDDLIISSSCRDLDAYIITKCLPHQTGRHNSKTLQLREEEYSSPFTEIRESSSSKSSVGNSL 673 (1328)
T ss_pred CCCCCchhhhhhhcc--cchhhcccCchHHHHHHHHHhhCcHhhhcccCcceEEEeccccCchhhccccccCcccccccc
Confidence 778888888764333 2223333333 456788889998765521 2222211000000 00111 1
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCee--ecC----HhHHhchhhcCCcccccC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTL--EVT----KEILSTYKNQGGYDMLGR 166 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~--eLt----~~~v~~~~n~GG~~~lGS 166 (623)
..++||||+.||||||+||||+|++.++. +.+ |+||.+||.||+++++. .|| .+.++.++|+||+ ++..
T Consensus 674 ~~~~vgIv~~g~~aPG~NnVI~g~~~~~~--~~g--vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~-~~~~ 748 (1328)
T PTZ00468 674 ACESLGLILSCLSTPGTQNVICGLVNGLP--SLK--QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGC-IFPN 748 (1328)
T ss_pred cceeEEEEecCCCCccHHHHHHHHHHHHH--hCC--cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCe-eeec
Confidence 34899999999999999999999999887 333 99999999999999864 555 4799999999997 5555
Q ss_pred c----------CCCCCC-----hH---------------HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-
Q 006961 167 T----------KDQIRT-----TE---------------QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK- 215 (623)
Q Consensus 167 ~----------R~k~~t-----~e---------------~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g- 215 (623)
+ |..+.+ ++ +.+.+.++|++++||+||+||||||+++|+.|+|+|.+++
T Consensus 749 ~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~ 828 (1328)
T PTZ00468 749 GVEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSL 828 (1328)
T ss_pred cccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhcc
Confidence 5 543322 12 5588999999999999999999999999999999998865
Q ss_pred ----CCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCc
Q 006961 216 ----CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPN 291 (623)
Q Consensus 216 ----~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pn 291 (623)
++++||||||||||||+++.+|+|||||||+++++++|+|+++|++|+++||||||+|||+||||||+||||||||
T Consensus 829 ~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLatgan 908 (1328)
T PTZ00468 829 NGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQTHPN 908 (1328)
T ss_pred ccccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhhCCC
Confidence 5799999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCcchhc----------cCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCh---hHHHHHHHHHHhhhcCC
Q 006961 292 MVILGEEVAAS----------KLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIP---EVYALLKEIHSLLRQGV 358 (623)
Q Consensus 292 iilIpEe~~~~----------~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ip---e~~~li~el~~~~~~~~ 358 (623)
+|||||++..+ ++||++++++|++.|++|+++||+|||||||||+++++| |++.||.|+ ++.+.
T Consensus 909 ivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~---~a~~~ 985 (1328)
T PTZ00468 909 LVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRF---STQNL 985 (1328)
T ss_pred EEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHH---hhhcc
Confidence 99999998543 589999999999999999999999999999999999999 889999983 33221
Q ss_pred C--------CccccccCChhhhhh---hccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCc
Q 006961 359 P--------VDNISSQLSPWASAL---FEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGK 427 (623)
Q Consensus 359 ~--------~~~~~~~ls~~s~~l---f~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~ 427 (623)
. .+++.++||+|++++ |.+||++|++||+++|| ||+|+|+||||++|++||++||++|+++|+|+|+
T Consensus 986 ~~~~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~d--gn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~ 1063 (1328)
T PTZ00468 986 CNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLI--NSRKICDVRTEIILSALVQKELKFRRSKNKIKNG 1063 (1328)
T ss_pred ccccchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccC--CCcchhhhhHHHHHHHHHHHHHHHHHhcCccccc
Confidence 1 246788999999999 99999999999999988 9999999999999999999999999999999997
Q ss_pred cceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-CceEEEEecCCCCCCceeEEecchHhhhhhccccCC--
Q 006961 428 KFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL-NGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQN-- 504 (623)
Q Consensus 428 ~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~-tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~g-- 504 (623)
|++++|||||++||+.||+|||+|||.||+.|..++.+|. ||||++|+|+..|+.+|+++++||++||++|+ |+|
T Consensus 1064 -f~~~~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~~~-~~~~~ 1141 (1328)
T PTZ00468 1064 -MNPVCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTLNI-EGDKI 1141 (1328)
T ss_pred -cceeeccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCccc-ccCcc
Confidence 9999999999999999999999999999999999999999 69999999999999999999999999999998 776
Q ss_pred ------CCCCCCCcceeee----------------eEEc-CCChHHHHHHHHhhhccccCcccCCCcccccCCCCCCCcc
Q 006961 505 ------PGASSIGRPAINP----------------ATVD-MRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAV 561 (623)
Q Consensus 505 ------~~~~~~~~p~i~~----------------~~Vd-l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~ 561 (623)
...+++.||||+| ++|| |+|++|+.|+++|++|+++|+|+|||||||+||.+|++++
T Consensus 1142 ~~~~~~~~~~~~~k~vi~~~~~~~~~~~~~~~~~~~~Vd~l~g~~f~~~~~~r~~w~~~d~y~~PGPiQ~~gp~~~~~~~ 1221 (1328)
T PTZ00468 1142 MDSRNNSNLSFESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQYFNLFKNLFNR 1221 (1328)
T ss_pred cccccccccccccccceeccccccccccccccccccccccccCHHHHHHHHHHHhhhhccccCCCCCccccCccccCCCe
Confidence 2244588999999 8999 7999999999999999999999999999999999999999
Q ss_pred eeEecccchhhhHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHhhccCC
Q 006961 562 TLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASG 618 (623)
Q Consensus 562 tl~~~~~~y~~~~~~~~~~~~~~~~~~~~g~~~~~l~~a~~~~~~~~~~~~~~~~~~ 618 (623)
||.+|+++|++|+++|++|+++||++|+||||+|+||+|+++|+||+++|++||+|+
T Consensus 1222 tL~~e~~~~~~~l~~~~~~~~~~k~~c~~g~~~~~l~~a~~~~~~v~~~~~~~s~~~ 1278 (1328)
T PTZ00468 1222 TLFESEYVYTRNLKEMDQILLEIKTLCQLGVEKDILNSTIQHLKAIQNSISIMSSCN 1278 (1328)
T ss_pred eeeehhhHHHHHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999998
No 9
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=6.7e-127 Score=1117.65 Aligned_cols=522 Identities=34% Similarity=0.643 Sum_probs=490.9
Q ss_pred hhcccCCCccCcCCCcee---eecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEec
Q 006961 26 YLLQMFSFNANMQGTTVR---VEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFC 102 (623)
Q Consensus 26 ~~~~~p~lp~~l~~~~~~---~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~s 102 (623)
-...+|+||++|++. ++ +..|+++.+. .|.+++.++||++++.|.+++.+... ........++||||++|
T Consensus 113 r~~~~p~lp~~l~~~-~~~~~~~~g~~~~~~--~d~~~~~~f~~~~~~~~~~~~~~~~~----~~~~~~~~~~rIgIl~S 185 (1419)
T PTZ00287 113 RIKYQPTLPKALASE-YQILEENHGDDFINK--KDYEEVKRFLKNLHNLPILNVKETNN----HESFKGGNVLKIGIILS 185 (1419)
T ss_pred HHhcCCCCchhhccc-cccceeccCcccccc--cCHHHHHHHHHHhhcCceeeecCCCc----cccccccCceEEEEEcc
Confidence 344889999999885 76 7889888777 88899999999999999999986431 11112234589999999
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHH
Q 006961 103 GRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALT 182 (623)
Q Consensus 103 GG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~ 182 (623)
|||||||||||+|+++++.+.+++++||||++||+||+++++++|+++.++.|+++|||++|||+|.++.++++++++++
T Consensus 186 GGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~~~e~~~ki~e 265 (1419)
T PTZ00287 186 GGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDLIAIEN 265 (1419)
T ss_pred CCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCCCHHHHHHHHH
Confidence 99999999999999999987788999999999999999999999999999999999998899999999988999999999
Q ss_pred HHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhh
Q 006961 183 ACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALS 262 (623)
Q Consensus 183 ~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S 262 (623)
+|++++||+||+||||||+++|++|+|++.+.+++++||||||||||||+++.+|+|||||||+++++++|+|++.|+.|
T Consensus 266 ~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~I~ni~~D~~S 345 (1419)
T PTZ00287 266 IVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKT 345 (1419)
T ss_pred HHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999766679999999999999999999999999
Q ss_pred ccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChh
Q 006961 263 AEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPE 342 (623)
Q Consensus 263 ~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe 342 (623)
++++|||||+|||+|||||++||||++||+|||||+++.++++|++++++|++.|.+|+..||+|||||||||++++||+
T Consensus 346 s~~~~~VVEVMGR~AG~LAl~~aLAtgAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIvVsEGlie~Ipe 425 (1419)
T PTZ00287 346 GHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVILIPEGLIEFVPE 425 (1419)
T ss_pred hCCeEEEEEECCCcchHHHHHHHHhcCCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcchhcch
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhcc
Q 006961 343 VYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEG 422 (623)
Q Consensus 343 ~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g 422 (623)
++.||+|+|.+++++.. +.++++ |++++|++||.++++||+.+||+|||+||++|++|++|+++|+++|+++++++
T Consensus 426 ~~~Li~eln~~l~~g~~---~~~~~~-~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L~~~~~~g 501 (1419)
T PTZ00287 426 MKILIGELNVILKEGPF---DASKLK-HSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESELAKLNDNN 501 (1419)
T ss_pred HHHHHHHhhhhcccCcc---hhhhhh-hhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999987642 345667 99999999999999999999999999999999999999999999999998865
Q ss_pred ccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchHhhhhhcccc
Q 006961 423 TYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWS 502 (623)
Q Consensus 423 ~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r 502 (623)
.+|++++|+|||+|||+.||+||+.|||.||+.|++++.+|.||||++|+|+..++++|+++++||++||++|+ |
T Consensus 502 ----~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~~e~-~ 576 (1419)
T PTZ00287 502 ----LNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMHVNR-D 576 (1419)
T ss_pred ----CCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhhHHh-h
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred C-CCCCCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCcccCCCcccccCCCCCCCcceeEeccc
Q 006961 503 Q-NPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDR 568 (623)
Q Consensus 503 ~-g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~~~~ 568 (623)
+ | +++|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.+|..
T Consensus 577 ~~g-----~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~Y~~pGpiQ~~g~~~d~~~~tl~~e~~ 638 (1419)
T PTZ00287 577 NTG-----KEFPAVKRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNGHLSNSRCYTVKIPTK 638 (1419)
T ss_pred ccC-----CCceeEEeeeeCCCCHHHHHHHHHHHHhhhcccccCCCCeeccccccCCCceeeeccch
Confidence 6 8 89999999999999999999999999999999999999999999999999999999964
No 10
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=1.2e-90 Score=755.82 Aligned_cols=433 Identities=21% Similarity=0.302 Sum_probs=367.9
Q ss_pred CCCCCCcccccchhHHHhhcccCCCccCcCC-CceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcc
Q 006961 9 PSDPQSFHFWDIALLAIYLLQMFSFNANMQG-TTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQ 87 (623)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~p~lp~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~ 87 (623)
+.-++||.++|||||+||||+.|++|++|+. +.+......... +++..+...-.+.......+|++++ ||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~----~~~~v~~~~~~~~~~~~~~~~~~ag---pr~~ 80 (484)
T PLN02564 8 VTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVN----EDDTVAQKIVVHKDSPRGTHFRRAG---PRQK 80 (484)
T ss_pred ccCCCceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeC----CCCeEEEeecccccccCCccceecC---Ccce
Confidence 3568899999999999999999999999985 444433332221 3333433333333344558999999 9999
Q ss_pred cccCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCc
Q 006961 88 IITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRT 167 (623)
Q Consensus 88 ~~~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~ 167 (623)
++|++..+|||||||||+|||||+||+++++.+...+...+||||++||+||+++++++||++.++.|+++||| +|||+
T Consensus 81 i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGTs 159 (484)
T PLN02564 81 VYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGT-ILGTS 159 (484)
T ss_pred EEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCc-eeccC
Confidence 99999999999999999999999999999998876566689999999999999999999999999999999996 99999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH
Q 006961 168 KDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247 (623)
Q Consensus 168 R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~ 247 (623)
|.+. ++++++++|++++||+||+||||||+++|+.|+++++++|++++||||||||||||+++| +|||||||++
T Consensus 160 R~~~----~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD--~T~GFdTAv~ 233 (484)
T PLN02564 160 RGGH----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVID--KSFGFDTAVE 233 (484)
T ss_pred CCcc----hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcc--cCCCHHHHHH
Confidence 9865 688999999999999999999999999999999999999999999999999999999888 9999999999
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhc-CCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCC
Q 006961 248 VNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQS-HPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKN 326 (623)
Q Consensus 248 ~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~ 326 (623)
+++++|++++.||.|++++|+|||+|||+|||||+++|||+ +||+|||||.+ ++|++ ...+++.|++|+++ ++
T Consensus 234 ~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~p----f~le~-~~~ll~~i~~rl~~-~~ 307 (484)
T PLN02564 234 EAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESP----FYLEG-KGGLFEFIEKRLKE-NG 307 (484)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCC----CCcch-HHHHHHHHHHHHhc-cC
Confidence 99999999999999998889999999999999999999999 69999999976 55553 34566777888876 79
Q ss_pred eEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHH
Q 006961 327 HGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKL 406 (623)
Q Consensus 327 ~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~l 406 (623)
|+|||||||+... ++.+- .+. ...+|++||++++++ ..+
T Consensus 308 ~~VIVVAEGagq~------~~~~~-------------------------------~~~--~~~~Da~Gn~~l~di--g~~ 346 (484)
T PLN02564 308 HMVIVVAEGAGQD------LIAES-------------------------------MES--SDLQDASGNKLLLDV--GLW 346 (484)
T ss_pred CEEEEEeCCCccc------hhhhh-------------------------------hcc--cccccccCCcccCcH--HHH
Confidence 9999999999532 11110 000 124799999999986 577
Q ss_pred HHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCcee
Q 006961 407 LAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWR 486 (623)
Q Consensus 407 L~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~ 486 (623)
|++.|++++.++. +..+++|+..+||+|||+.|+++|+.||+.||+.||+++++|+||+|++++|++
T Consensus 347 La~~I~~~~~~~~------~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg~mVg~~~~~------- 413 (484)
T PLN02564 347 LSQKIKDHFTKVK------KMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGR------- 413 (484)
T ss_pred HHHHHHHHhhhcc------cCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------
Confidence 8888877774432 223899999999999999999999999999999999999999999999999986
Q ss_pred EEecchHhhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHHHH
Q 006961 487 CGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQN 533 (623)
Q Consensus 487 ~~~vPl~~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~ 533 (623)
+..+||.+++... +.||++|..|......
T Consensus 414 ~~~vPi~~~~~~~------------------~~v~~~~~~w~~~l~~ 442 (484)
T PLN02564 414 HAYIPFYRITEKQ------------------NKVVITDRMWARLLSS 442 (484)
T ss_pred EEEEEHHHHhccC------------------CccCCChHHHHHHHHH
Confidence 8999999997521 2368888888755443
No 11
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=3.8e-84 Score=686.28 Aligned_cols=336 Identities=29% Similarity=0.471 Sum_probs=307.0
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC-CC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI-RT 173 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~-~t 173 (623)
+||||++|||||||||++|+++++++.. .+++||||++||+||+++++++|+++.++.|+++||| +|||+|.++ ++
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 77 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGT-IIGSARCKEFRT 77 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCe-ecccCCCCccCC
Confidence 5999999999999999999999999874 4689999999999999999999999999999999997 999999886 67
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 253 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I 253 (623)
++++++++++|++++||+||+||||||+++|++|+|+|++++.+++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td--~s~Gf~TA~~~~~~~i 155 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTD--YTIGFDTALKTIVEAI 155 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcc--cCcCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999887 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 254 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 254 ~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
++++.||.|+ +||||||+|||+|||||++||||++||+|||||++.. .+.++.+++.|++|++++++|+|||||
T Consensus 156 ~~l~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~~ad~iliPE~~~~-----~~~~~~~~~~i~~r~~~~~~~~vivvs 229 (338)
T cd00363 156 DRIRDTASSH-QRTFVVEVMGRHCGDIALEAGLATGADIIFIPEEPAA-----DEWEEEMVDVIKKRRERGKRHGIVIVA 229 (338)
T ss_pred HHHHHhcccC-CCEEEEEECCcCHHHHHHHHHHHhCCCEEEeCCCCCC-----CCCHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 9999999995 5799999999999999999999999999999998732 233688899999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 334 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 334 EGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
||+.+.+|. ..++++|++++++
T Consensus 230 EG~~~~~~~----------------------------------------------------------~~~~~~l~~~i~~ 251 (338)
T cd00363 230 EGAIDFIPK----------------------------------------------------------PITEKLLAKLVEE 251 (338)
T ss_pred CCCcccccc----------------------------------------------------------CchHHHHHHHHHH
Confidence 999865441 1134556666665
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchH
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 493 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~ 493 (623)
++ | +++|.++|||+|||+.||+||+.||++||..|++++++|.||+|++++|+. +|++..+||+
T Consensus 252 ~~----------~--~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~mv~~~~~~----~~~~~~vpl~ 315 (338)
T cd00363 252 RL----------G--FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLN----ENQVVRHPLT 315 (338)
T ss_pred Hc----------C--CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCcEEEEECCc----cCEEEEecHH
Confidence 54 2 889999999999999999999999999999999999999999999999985 8999999999
Q ss_pred hhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHH
Q 006961 494 SMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLR 531 (623)
Q Consensus 494 ~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~ 531 (623)
++++.+| +-+ ||++|+.|+.|.
T Consensus 316 ~~~~~~~-~~~---------------~~~~~~~~~~~~ 337 (338)
T cd00363 316 EAVNMTK-RVG---------------VDLEGRPFKKFA 337 (338)
T ss_pred HHHhhhc-ccc---------------cCCChHHHHHhh
Confidence 9999877 222 999999999875
No 12
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=1e-83 Score=702.31 Aligned_cols=347 Identities=22% Similarity=0.322 Sum_probs=314.1
Q ss_pred ceeEecCccCCCCcccccCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHH
Q 006961 73 LAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEIL 152 (623)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v 152 (623)
..+|++++ ||++++|+++.+|||||||||+|||||+||+++++++...+.+.+||||++||+||+++++++||++.+
T Consensus 69 ~~~~~~ag---pr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V 145 (459)
T PTZ00286 69 TKRWLRAG---PRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDV 145 (459)
T ss_pred cchheecC---CceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHh
Confidence 47999999 999999999999999999999999999999999999876566789999999999999999999999999
Q ss_pred hchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 153 STYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 153 ~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+.|+++||| +|||+|.++ ++++++++|++++||+||+||||||+++|..|+|+++++|++|+||||||||||||+
T Consensus 146 ~~i~~~GGT-iLGTSR~~~----~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~ 220 (459)
T PTZ00286 146 KTIHRLGGT-ILGSSRGGF----DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIP 220 (459)
T ss_pred hhHHhCCCc-eeccCCChh----hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCC
Confidence 999999996 999999874 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC-CcEEEECCcchhccCCHHHHHH
Q 006961 233 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH-PNMVILGEEVAASKLTLFDLTK 311 (623)
Q Consensus 233 ~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~-pniilIpEe~~~~~~tL~~iv~ 311 (623)
++| +|||||||+++++++|++++.||.|++++|+|||+|||+|||||+++|||++ ||+|||||.+ ++|+
T Consensus 221 ~td--~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~----f~l~---- 290 (459)
T PTZ00286 221 IID--ESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFD----IPLE---- 290 (459)
T ss_pred Ccc--cCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCC----CCHH----
Confidence 888 9999999999999999999999999988899999999999999999999996 9999999976 5664
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCC
Q 006961 312 QICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPE 391 (623)
Q Consensus 312 ~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD 391 (623)
.+++.|++|++ +++|+|||||||+.+.+.+- ++...+|
T Consensus 291 ~ll~~l~~r~~-~~~~~VIVVaEGa~~~~~~~-----------------------------------------~~~~~~D 328 (459)
T PTZ00286 291 GVLEYIEQRLQ-KKGHCVIVVAEGAGQSLKDA-----------------------------------------DLDLGTD 328 (459)
T ss_pred HHHHHHHHHHh-cCCcEEEEEecCCccccccc-----------------------------------------ccccccc
Confidence 55666777875 48999999999997532210 0013579
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCce
Q 006961 392 SDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGY 471 (623)
Q Consensus 392 ~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~ 471 (623)
++||++++++ +.+|++.++++++++. ..+++|+..+||+|||+.||++|+.||+.||+.||+++++|.||+
T Consensus 329 ~~Gn~~l~di--g~~L~~~I~~~~~~~~-------~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~ 399 (459)
T PTZ00286 329 ASGNKKLWDI--GVYLKDEITKYLKKKK-------PEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGF 399 (459)
T ss_pred ccCCcccccH--HHHHHHHHHHHHhhcc-------CceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
Confidence 9999999874 5778888777775542 228999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCceeEEecchHhh
Q 006961 472 MATVTNLKNPANKWRCGAAPITSM 495 (623)
Q Consensus 472 mv~i~n~~~~~~~w~~~~vPl~~~ 495 (623)
|++++|.+ +..+||.++
T Consensus 400 ~Vg~~~~~-------~~~vPl~~v 416 (459)
T PTZ00286 400 IIGHVHNN-------YVMIPIKEM 416 (459)
T ss_pred EEEEECCE-------EEEEeHHHH
Confidence 99999985 889999997
No 13
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=2e-82 Score=688.97 Aligned_cols=370 Identities=23% Similarity=0.353 Sum_probs=326.0
Q ss_pred CCCceeEecCccCCCCcccccCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhc---CCeee
Q 006961 70 GQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA---QKTLE 146 (623)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~---~~~~e 146 (623)
+.+...|.+++ ||++++|++..+|||||||||+|||||+||+++++.+...+..++||||++||+||++ +++++
T Consensus 59 ~~~~~~~~~ag---pr~~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~ 135 (443)
T PRK06830 59 GTEPPSFEKAG---PREKIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVE 135 (443)
T ss_pred ccccchhhhcC---CcceeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEE
Confidence 34567999999 9999999999999999999999999999999999998766666999999999999998 89999
Q ss_pred cCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 147 VTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 147 Lt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
||++.++.|+++||| +|||+|.+. ++++++++|++++||+||+||||||+++|+.|+|+++++|++++|||||||
T Consensus 136 Lt~~~v~~i~~~GGT-iLGTsR~~~----~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKT 210 (443)
T PRK06830 136 LTPEVVADIHEFGGT-ILGSSRGPQ----DPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKT 210 (443)
T ss_pred CCHHHHhhHHhCCCc-cccCCCCch----hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 999999999999997 999999763 688999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhc-CCcEEEECCcchhccCC
Q 006961 227 LNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQS-HPNMVILGEEVAASKLT 305 (623)
Q Consensus 227 IDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~t 305 (623)
|||||+++| +|||||||+++++++|++++.||.|++++|++||+|||+|||||+++|||+ +||+|||||.+ ++
T Consensus 211 IDNDi~~td--~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~----f~ 284 (443)
T PRK06830 211 IDNDINFIQ--KSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVP----FD 284 (443)
T ss_pred cCCCCcCcc--cCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCC----CC
Confidence 999999887 999999999999999999999999998889999999999999999999999 79999999986 56
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhh
Q 006961 306 LFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQ 385 (623)
Q Consensus 306 L~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~ 385 (623)
|+. ...+++.|++|++. ++|+|||||||+...+.+ +
T Consensus 285 l~~-~~~ll~~l~~r~~~-~~~~VIVVAEGag~~l~~------------------------------------------~ 320 (443)
T PRK06830 285 LEG-PNGLLAALEKRLAE-RGHAVIVVAEGAGQELFD------------------------------------------D 320 (443)
T ss_pred chh-HHHHHHHHHHHHHh-CCceEEEEecCccccccc------------------------------------------c
Confidence 653 34667778888865 999999999999643221 0
Q ss_pred hhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 006961 386 LLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILA 465 (623)
Q Consensus 386 l~~~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~ 465 (623)
...+|++||+++.+| ..+|++.++++++++ |..+++++..+||+|||+.||++|+.||+.||..|+++++
T Consensus 321 -~~~~Da~gn~~l~~i--g~~L~~~i~~~~~~~-------~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~ 390 (443)
T PRK06830 321 -TGETDASGNPKLGDI--GLFLKDRIKEYFKAR-------GIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAM 390 (443)
T ss_pred -cccccccCCcccccH--HHHHHHHHHHHhccc-------CCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 125799999999885 355666665555332 3337889999999999999999999999999999999999
Q ss_pred cCCCceEEEEecCCCCCCceeEEecchHhhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHHH
Q 006961 466 AGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQ 532 (623)
Q Consensus 466 ~G~tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~ 532 (623)
+|+||+|++++|.+ +..+||.++++.++ .||.+|..|+...+
T Consensus 391 ~G~tg~~Vg~~~~~-------~~~vPl~~v~~~~k------------------~vd~~~~~w~~~l~ 432 (443)
T PRK06830 391 AGKTGMVVGRWNNR-------FVHLPIDLAVSKRK------------------KVNPEGDLWRSVLE 432 (443)
T ss_pred CCCCCEEEEEECCE-------EEEEeHHHHhccCC------------------CCCCccHHHHHHHH
Confidence 99999999999985 89999999985322 46777887775443
No 14
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.6e-81 Score=677.70 Aligned_cols=364 Identities=21% Similarity=0.308 Sum_probs=318.1
Q ss_pred ceeEecCccCCCCcccccCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCC-EEEEEccChhhhhcCC--eeecCH
Q 006961 73 LAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKS-TLLGFLGGSEGLFAQK--TLEVTK 149 (623)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~-~v~Gf~~G~~GL~~~~--~~eLt~ 149 (623)
..+|.+++ ||++++|++..+|||||||||+|||||+||+++++.+.. + +. +||||++||+||++++ .++|++
T Consensus 35 ~~~~~~ag---pr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~-g~~~V~Gi~~G~~GL~~~~~~~~~l~~ 109 (411)
T PLN02884 35 EQWVHRAG---PRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-Y-GVKNIVGIPFGYRGFFEKGLSEMPLSR 109 (411)
T ss_pred hhhhhhcC---CceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-c-CCcEEEEEccCHHHHhCCCceeeecCH
Confidence 45788898 999999999999999999999999999999999998753 3 55 8999999999999999 667889
Q ss_pred hHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 006961 150 EILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 229 (623)
Q Consensus 150 ~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDN 229 (623)
+.|+.++++||+ +|||+|.++ .+++++++|++++||+||+||||||+++|.+|+++++++|++++||||||||||
T Consensus 110 ~~v~~i~~~GGt-~LGtsR~~~----~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDN 184 (411)
T PLN02884 110 KVVQNIHLSGGS-LLGVSRGGA----KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDN 184 (411)
T ss_pred HHHHHHHhCCCc-eeccCCCCc----cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccC
Confidence 999999999996 999999987 478999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC-CcEEEECCcchhccCCHHH
Q 006961 230 DLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH-PNMVILGEEVAASKLTLFD 308 (623)
Q Consensus 230 Dl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~-pniilIpEe~~~~~~tL~~ 308 (623)
||+++| +|||||||+++++++|++++.||.|++++|+|||+|||+|||||+++|||++ ||+|||||.+ ++++.
T Consensus 185 Di~~tD--~TiGFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~----f~~~~ 258 (411)
T PLN02884 185 DILLMD--KTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVP----FTLDG 258 (411)
T ss_pred CCcCcc--cCCCHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCC----CCccc
Confidence 999988 9999999999999999999999999666799999999999999999999998 9999999976 34321
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhc
Q 006961 309 LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLL 388 (623)
Q Consensus 309 iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~ 388 (623)
.+.+++.|++|++ +|+|+|||||||+...+.+ + ..
T Consensus 259 -~~~~~~~i~~~~~-~k~~~iIVVAEG~g~~~~~------~-------------------------------------~~ 293 (411)
T PLN02884 259 -PNGVLRHLEHLIE-TKGSAVVCVAEGAGQDLLQ------K-------------------------------------TN 293 (411)
T ss_pred -HHHHHHHHHHHHh-cCCcEEEEEeccccccccc------c-------------------------------------cc
Confidence 3566677787776 8999999999999543221 0 02
Q ss_pred CCCCCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 006961 389 QPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL 468 (623)
Q Consensus 389 ~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~ 468 (623)
.+|++||++++++ .+.|++.|++++++. |.++++|+..|||+||||.|+.+|+.||+.||..||+++++|.
T Consensus 294 ~~Da~G~~~l~~~--~~~La~~i~~~~~~~-------g~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~ 364 (411)
T PLN02884 294 ATDASGNPVLGDI--GVHLQQEIKKHFKDI-------GVPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGF 364 (411)
T ss_pred cccccCCcccCcH--HHHHHHHHHHHhhcc-------CCCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999975 345666666555432 3237999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCceeEEecchHhhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHH
Q 006961 469 NGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLR 531 (623)
Q Consensus 469 tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~ 531 (623)
+|+|++++|. ++..+||.++++.+ +.||.+|..|+.+.
T Consensus 365 sg~mV~l~~~-------~~~~vpl~~v~~~~------------------k~vd~~~~~~~~~~ 402 (411)
T PLN02884 365 SGITVGICNT-------HYVYLPIPEVIAYP------------------RRVDPNSRMWHRCL 402 (411)
T ss_pred CCeEEEEECC-------EEEEEeHHHHhcCC------------------CCCCCCcHHHHHHH
Confidence 9999999996 48899999998633 35777888877544
No 15
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.1e-81 Score=682.48 Aligned_cols=342 Identities=19% Similarity=0.308 Sum_probs=302.2
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhc---hhhcCCcccccCcCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILST---YKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~---~~n~GG~~~lGS~R~k 170 (623)
++||||+||||||||||++|+|+++.+....+.++||||++||+||+++++++|+...++. +.++||| +|||+|.+
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt-~LgssR~~ 81 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSG-ALGSCRYK 81 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCe-EeccCCCC
Confidence 4899999999999999999999999987654559999999999999999999999866666 8999997 99999998
Q ss_pred C----CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH
Q 006961 171 I----RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 246 (623)
Q Consensus 171 ~----~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~ 246 (623)
+ .+++++++++++|++++||+||+||||||+++|++|+|+++++|++++||||||||||||.++| +|||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD--~t~GF~TA~ 159 (416)
T PRK14072 82 LKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTD--HCPGFGSAA 159 (416)
T ss_pred CcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCC--CCCChHHHH
Confidence 6 3688999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHhhccC--ceEEEEecCCCccHHHHHhhhh-----cCCcEEEECCcchhccCCHHHHHHHHHHHHHH
Q 006961 247 KVNSQLISNVCTDALSAEK--YYYFIRLMGRRASHVALECTLQ-----SHPNMVILGEEVAASKLTLFDLTKQICDAVQA 319 (623)
Q Consensus 247 ~~~s~~I~ni~~da~S~~k--~~~fVevMGR~aG~LAL~~aLa-----t~pniilIpEe~~~~~~tL~~iv~~I~~~I~~ 319 (623)
++++++|++|+.|++|+.+ ||||||||||+|||||+++||| ++||+|||||.+ +++ +.+++.|++
T Consensus 160 ~~i~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliPE~~----~~~----~~~~~~i~~ 231 (416)
T PRK14072 160 KYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPERP----FDE----EKFLADVRA 231 (416)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCCCccEEEccCCC----CCH----HHHHHHHHH
Confidence 9999999999888877543 6999999999999999999999 999999999976 344 445555666
Q ss_pred HHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccc
Q 006961 320 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLS 399 (623)
Q Consensus 320 R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls 399 (623)
+++. ++|+|||||||+.+...+ .+.| . ...+|+|||++++
T Consensus 232 ~~~~-~~~~ivvVaEG~~~~~g~---~i~e-----------------------------------~-~~~~D~~gh~~l~ 271 (416)
T PRK14072 232 IVKR-YGYCVVVVSEGIRDADGK---FIAE-----------------------------------A-GLAEDAFGHAQLG 271 (416)
T ss_pred HHHh-CCCeEEEEecCccccccc---chhc-----------------------------------c-ccccCCCCCcccc
Confidence 6655 899999999999754321 1111 0 1236999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Q 006961 400 QIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSL--PSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 477 (623)
Q Consensus 400 ~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~--PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n 477 (623)
+ ++++|+++|++++ | +++|+++|||+||||. ||+|||.||++||..||+++.+|.+|+|++++|
T Consensus 272 g--~~~~La~~i~~~~----------g--~~~R~~~LG~~QRgg~~~ps~~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~~ 337 (416)
T PRK14072 272 G--VAPVLANLIKEKL----------G--KKVHWAVLDYLQRAARHIASKTDVEEAYAVGKAAVEYALAGKNGVMPAIRR 337 (416)
T ss_pred c--HHHHHHHHHHHHh----------C--CeEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCceEEEEc
Confidence 8 4577777776554 3 7899999999999998 999999999999999999999999999999999
Q ss_pred CCCCCCceeEEecchHhhhhhcc
Q 006961 478 LKNPANKWRCGAAPITSMMTVKR 500 (623)
Q Consensus 478 ~~~~~~~w~~~~vPl~~~~~~e~ 500 (623)
+..++|+|++..+||.++++.+|
T Consensus 338 ~~~~~y~~~~~~vpl~~v~~~~k 360 (416)
T PRK14072 338 TSDDPYKWKIGLVPLSKVANKEK 360 (416)
T ss_pred CCCCcceeEEEcccHHHHHhhcC
Confidence 99999999999999999998544
No 16
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-80 Score=655.29 Aligned_cols=341 Identities=28% Similarity=0.422 Sum_probs=291.2
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC-CCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD-QIR 172 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~-k~~ 172 (623)
++||||+|||||||||||||+++++++.. .+++||||++||+||+++++++|+++.++.|+|+||| +|||+|. +++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~--~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT-~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK--EGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGT-FLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH--cCCEEEEEecchhhhcCCcceeccccchhHHHhcCCe-EEeeCCCCCcc
Confidence 58999999999999999999999999874 3999999999999999999999999999999999998 6676665 589
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 252 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~ 252 (623)
++|.++++++++++++||+||+||||||+++|+.|+|++ +++|||||||||||+.++| +|||||||+++++++
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td--~tiGfdTA~~~~~ea 151 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTD--FTIGFDTALETAVEA 151 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccc--cCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 3999999999999999887 999999999999999
Q ss_pred HHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHH-HHHcCCCeEEEE
Q 006961 253 ISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA-RAEQDKNHGVIL 331 (623)
Q Consensus 253 I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~-R~~~gk~~gVIv 331 (623)
|++|+ |+.|+++||||||||||+||||||+||+|++||+|+|||+... + . +++++..+++ |..+||+|++|+
T Consensus 152 id~l~-dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilipE~~~~----~-~-i~~~~~~i~~~~~~~gk~~~iIv 224 (347)
T COG0205 152 IDNLR-DTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIPEEPAD----L-I-IEELIAEIKAKREARGKKHAIIV 224 (347)
T ss_pred HHHHH-HHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEecCcccc----c-h-HHHHHHHHHHHHHHhCCCceEEE
Confidence 99998 6666677899999999999999999999999999999998743 2 2 3444444444 555899999999
Q ss_pred EeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHH
Q 006961 332 LPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLV 411 (623)
Q Consensus 332 VsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV 411 (623)
|+||+.+++++ +|+.... .+
T Consensus 225 vaEG~~~~~~~--------------------------------------------------~~~~~~~----------~i 244 (347)
T COG0205 225 VAEGAIDQIGE--------------------------------------------------NGAELLA----------AI 244 (347)
T ss_pred Ecccccccccc--------------------------------------------------chhhHHH----------HH
Confidence 99999987653 1111111 12
Q ss_pred HHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecc
Q 006961 412 EVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAP 491 (623)
Q Consensus 412 ~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vP 491 (623)
++.+... . +++|.++|||+||||.||+||+.||+.||..||+++++|++|+|++++|++-....|.....|
T Consensus 245 ~~~~~~~--------~-~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~~~~~~~~~ 315 (347)
T COG0205 245 EELLALG--------D-FETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAP 315 (347)
T ss_pred HHHhhhc--------c-cceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCeeEeehhHhhhhh
Confidence 2222111 1 789999999999999999999999999999999999999999999999998666667666666
Q ss_pred hHhhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHH
Q 006961 492 ITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELL 530 (623)
Q Consensus 492 l~~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~ 530 (623)
...+++.++ .++.+++++||+.+..+..+
T Consensus 316 ~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~ 344 (347)
T COG0205 316 LKMVMSLEE----------PDRSIKLDLVDLAKRLGIYF 344 (347)
T ss_pred hhhhhcccc----------cCcchhhHHHhhhhhhhhhh
Confidence 666665543 23458889999888887765
No 17
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=4.5e-78 Score=635.81 Aligned_cols=320 Identities=24% Similarity=0.384 Sum_probs=284.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeec-CHhHHhchhhcCCcccccCcCCCCC--
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEV-TKEILSTYKNQGGYDMLGRTKDQIR-- 172 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eL-t~~~v~~~~n~GG~~~lGS~R~k~~-- 172 (623)
|||||||||||||||++|+++++++.+ +.+++||||++||+||+++++++| ++++++.|+++||+ +|||+|.++.
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~-~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt-~LgtsR~~~~~~ 78 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIA-EYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGT-ILGSSRTNPFKY 78 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHH-cCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCc-cccCCCCCcccc
Confidence 699999999999999999999997753 447899999999999999999999 99999999999996 9999998764
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 252 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~ 252 (623)
+++++++++++|++++||+||+||||||+++|+.|+|. + ++|||||||||||++++| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~----g--i~vigiPkTIDNDl~gtd--~tiGfdTA~~~~~~~ 150 (324)
T TIGR02483 79 EEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK----G--LPVVGVPKTIDNDLEATD--YTFGFDTAVEIATEA 150 (324)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc----C--CCEEeeccccCCCCcCCc--cCcCHHHHHHHHHHH
Confidence 35889999999999999999999999999999999872 3 999999999999999987 999999999999999
Q ss_pred HHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 006961 253 ISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILL 332 (623)
Q Consensus 253 I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvV 332 (623)
|++++.||.|++| |||||+|||+|||||++||||++||+|||||++ +++ +++++.|++|+++|++|++|||
T Consensus 151 i~~i~~ta~S~~r-~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~~----~~~----~~l~~~v~~~~~~g~~~~vvvv 221 (324)
T TIGR02483 151 LDRLHTTAESHHR-VMVVEVMGRHAGWIALHSGIAGGADVILIPEIP----FDI----DSVCEKVRERFARGKRFAIVVV 221 (324)
T ss_pred HHHHHHHHhhcCC-EEEEEEcCCChhHHHHHHHhccCCCEEEecCCC----CCH----HHHHHHHHHHHHhCCCceEEEE
Confidence 9999999999865 799999999999999999999999999999986 454 5567778899999999999999
Q ss_pred eCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHH
Q 006961 333 PEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVE 412 (623)
Q Consensus 333 sEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~ 412 (623)
|||+.+.+... + +. ...+|+|||++++++ .++|++.+
T Consensus 222 sEG~~~~~~~~--~-----------------------------------~~---~~~~d~~gh~~~~~~--~~~l~~~i- 258 (324)
T TIGR02483 222 AEGAKPKGGEM--V-----------------------------------VQ---EGVKDAFGHVRLGGI--GNWLAEEI- 258 (324)
T ss_pred ecCccccccch--h-----------------------------------cc---ccccccccCcccCcH--HHHHHHHH-
Confidence 99998654421 0 00 024799999999884 34445444
Q ss_pred HHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecch
Q 006961 413 VEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPI 492 (623)
Q Consensus 413 ~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl 492 (623)
+++. | +++|...+||+||||.||+||+.+|++||..|++++++|.+|+|++++|++ +..+||
T Consensus 259 ---~~~~------g--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~ 320 (324)
T TIGR02483 259 ---ERRT------G--IETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTD-------IVYVPI 320 (324)
T ss_pred ---HHhc------C--CcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEeeH
Confidence 4432 3 788999999999999999999999999999999999999999999999986 889999
Q ss_pred Hhh
Q 006961 493 TSM 495 (623)
Q Consensus 493 ~~~ 495 (623)
.++
T Consensus 321 ~~~ 323 (324)
T TIGR02483 321 AEA 323 (324)
T ss_pred HHh
Confidence 875
No 18
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=6.2e-77 Score=625.88 Aligned_cols=301 Identities=25% Similarity=0.445 Sum_probs=273.1
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC-CCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 173 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k-~~t 173 (623)
+||||++|||||||||++|+++++++.. .+++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +++
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 78 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS--EGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGT-ILGSARFPEFKD 78 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH--CCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCc-ccccCCCCCcCC
Confidence 6999999999999999999999998864 3789999999999999999999999999999999996 99999976 567
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 253 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I 253 (623)
++++++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||++++| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd--~s~Gf~TA~~~~~~~i 150 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTD--YTIGFDTALNTAVEAI 150 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCc--cCcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999974 6999999999999999988 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 254 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 254 ~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
++++.||.|++ ||||||+|||+|||||++||||++||+|||||++ +++ +++++.|++|+++|++|+|||||
T Consensus 151 ~~l~~~a~s~~-rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~~----~~~----~~l~~~i~~r~~~g~~~~vivvs 221 (320)
T PRK03202 151 DRLRDTASSHE-RVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVP----FDI----EELCAKIKKGRERGKKHAIIVVA 221 (320)
T ss_pred HHHHHHHhccC-CEEEEEECCCChHHHHHHHHHhcCCCEEEeCCCC----CCH----HHHHHHHHHHHHhcCCcEEEEEe
Confidence 99999998875 5899999999999999999999999999999986 444 56677788999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 334 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 334 EGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
||+.+. + .+++
T Consensus 222 Eg~~~~--------~-------------------------------------------------------------~l~~ 232 (320)
T PRK03202 222 EGVMPA--------E-------------------------------------------------------------ELAK 232 (320)
T ss_pred CCCCCH--------H-------------------------------------------------------------HHHH
Confidence 999641 0 0223
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchH
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 493 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~ 493 (623)
+++++. + +++|+..|||.||||.||++|+.+|++||..|++++++|.+|+|+++++.+ +..+||.
T Consensus 233 ~i~~~~------~--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~~v~~~~~~-------~~~vpl~ 297 (320)
T PRK03202 233 EIEERT------G--LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGRMVGIQNNK-------IVHVPIE 297 (320)
T ss_pred HHHHHh------C--CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEEeHH
Confidence 333332 2 788999999999999999999999999999999999999999999999985 8999999
Q ss_pred hhh-hhc
Q 006961 494 SMM-TVK 499 (623)
Q Consensus 494 ~~~-~~e 499 (623)
+++ +.+
T Consensus 298 ~v~~~~~ 304 (320)
T PRK03202 298 EAVENMK 304 (320)
T ss_pred HHHhcCC
Confidence 998 643
No 19
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.1e-76 Score=633.23 Aligned_cols=340 Identities=23% Similarity=0.358 Sum_probs=295.6
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcC--CeeecCHhHHhchhhcCCcccccCcCC--
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKD-- 169 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GG~~~lGS~R~-- 169 (623)
.+||||+||||||||||++|+++++++.. +++++||||++||+||+++ ++++|+++.++.|+++||| +|||+|.
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~-~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~~ 81 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARG-TYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGT-ILGTTNKGD 81 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHh-cCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCc-eeccCCCCC
Confidence 57999999999999999999999998763 3478999999999999999 9999999999999999997 9999962
Q ss_pred CCC-------ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCh
Q 006961 170 QIR-------TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGF 242 (623)
Q Consensus 170 k~~-------t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GF 242 (623)
.++ .++.+++++++|++++||+||+||||||++.|+.|++. .+++||||||||||||+++| +||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td--~t~Gf 154 (360)
T PRK14071 82 PFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATE--VSIGF 154 (360)
T ss_pred ccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcc--cCcCh
Confidence 222 25678999999999999999999999999999999873 26999999999999999998 99999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHH
Q 006961 243 DTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE 322 (623)
Q Consensus 243 dTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~ 322 (623)
|||+++++++|++++.+|.|++ +|+|||||||+|||||+++|||++||+|||||.+ ++++ ++++.|++|++
T Consensus 155 ~TA~~~~~~~id~i~~ta~s~~-rv~ivEvMGR~~G~LAl~~~la~ga~~iliPE~~----~~~~----~l~~~i~~~~~ 225 (360)
T PRK14071 155 DTAVNIATEALDRLHFTAASHN-RVMILEVMGRDAGHIALAAGIAGGADVILIPEIP----YTLE----NVCKKIRERQE 225 (360)
T ss_pred hHHHHHHHHHHHHHHhhhcccC-CEEEEEECCCCccHHHHHhHhhcCCCEEEECCCC----CCHH----HHHHHHHHHHH
Confidence 9999999999999999999875 5899999999999999999999999999999975 5654 45666788988
Q ss_pred cCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhh
Q 006961 323 QDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIE 402 (623)
Q Consensus 323 ~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~ 402 (623)
++++|+|||||||+.+...+ ...++|++||++++++
T Consensus 226 ~~~~~~iivvsEG~~~~~g~-------------------------------------------~~~~~d~~g~~~~~~~- 261 (360)
T PRK14071 226 EGKNFCLVVVSEAVRTEEGE-------------------------------------------QVTKTQALGEDRYGGI- 261 (360)
T ss_pred cCCCeEEEEEcCCCcccccc-------------------------------------------cccccccccccccCcH-
Confidence 89999999999999754221 0124799999999884
Q ss_pred hHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCC
Q 006961 403 TEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPA 482 (623)
Q Consensus 403 te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~ 482 (623)
.++|+++++ ++. | +++|...|||+||||.||+||+.+|++||..|++++++|.||+|+++++.+
T Consensus 262 -~~~l~~~i~----~~~------g--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~t~~mv~~~~~~--- 325 (360)
T PRK14071 262 -GQYLAEQIA----ERT------G--AETRVTVLGHIQRGGIPSPRDRLLASAFGVAAVDLIAQGKFDRMVAWQNRQ--- 325 (360)
T ss_pred -HHHHHHHHH----Hhc------C--CCeeEEecChhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE---
Confidence 345555554 432 3 788999999999999999999999999999999999999999999999984
Q ss_pred CceeEEecchHhhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHHHH
Q 006961 483 NKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQN 533 (623)
Q Consensus 483 ~~w~~~~vPl~~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~ 533 (623)
+..+||.++++.+ +.||.+|..|+.++..
T Consensus 326 ----~~~vpl~~v~~~~------------------~~v~~~~~~~~~~~~~ 354 (360)
T PRK14071 326 ----VVSVPIAEAIATY------------------RAVDPEGTLVKTARGL 354 (360)
T ss_pred ----EEEEeHHHHhcCC------------------CCCCccHHHHHHHHHH
Confidence 8999999998632 3567788888876654
No 20
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=7.7e-77 Score=620.11 Aligned_cols=299 Identities=26% Similarity=0.404 Sum_probs=268.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC-CCCh
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRTT 174 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k-~~t~ 174 (623)
||||++|||||||||++|+++++++.. .+++||||++||+||+++++++|+++.++.|+++||| +|||+|.+ ++++
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~~ 77 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY--HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGT-ILGTARCPEFKTE 77 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCc-eeccCCCCccCCH
Confidence 699999999999999999999998864 3789999999999999999999999999999999997 99999975 6678
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHH
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 254 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ 254 (623)
+++++++++|++++||+||+||||||+++|+.|+|++ +++|||||||||||++++| +|||||||+++++++|+
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~-----~i~vigiPkTIDNDl~~td--~s~GfdTA~~~~~~~i~ 150 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-----GIPVIGLPGTIDNDIPGTD--YTIGFDTALNTIIDAVD 150 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhh-----CCCEEeecccccCCCcCcc--cCcChhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999974 5999999999999999888 99999999999999999
Q ss_pred HHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 006961 255 NVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334 (623)
Q Consensus 255 ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsE 334 (623)
+++.+|.|++ +|||||+|||+|||||++||||++||+|||||++ +++ +++++.|++|+++|++|++|||||
T Consensus 151 ~i~~ta~s~~-rv~ivEvMGR~~G~lAl~~~la~gad~iliPE~~----~~~----~~l~~~i~~r~~~g~~~~iIvvaE 221 (301)
T TIGR02482 151 KIRDTATSHE-RAFVIEVMGRHAGDLALYSGIATGAEIIIIPEFD----YDI----DELIQRLKEQHEAGKKHSIIIVAE 221 (301)
T ss_pred HHHHHhhcCC-CEEEEEeCCCCHHHHHHHHHHHcCCCEEEECCCC----CCH----HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9987788875 5899999999999999999999999999999986 554 455677889999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHH
Q 006961 335 GLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVE 414 (623)
Q Consensus 335 Gl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~e 414 (623)
|+.. +.. ..|++ +
T Consensus 222 G~~~--~~~-------------------------------------------------------------~~l~~----~ 234 (301)
T TIGR02482 222 GNIV--GSA-------------------------------------------------------------KEVAK----K 234 (301)
T ss_pred CCcC--CcH-------------------------------------------------------------HHHHH----H
Confidence 9531 000 01222 3
Q ss_pred HHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchHh
Q 006961 415 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITS 494 (623)
Q Consensus 415 l~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~~ 494 (623)
++++. | +++|...|||.||||.||+||+.+|++||..|++++++|.+|+|+++++++ +..+||.+
T Consensus 235 l~~~~------g--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~~~ 299 (301)
T TIGR02482 235 IEEAT------G--IETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVMIGIQNNK-------IVTHPIEE 299 (301)
T ss_pred HHHhc------C--CeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEeeHHH
Confidence 33221 3 789999999999999999999999999999999999999999999999986 88899987
Q ss_pred h
Q 006961 495 M 495 (623)
Q Consensus 495 ~ 495 (623)
+
T Consensus 300 ~ 300 (301)
T TIGR02482 300 A 300 (301)
T ss_pred h
Confidence 6
No 21
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=1.8e-76 Score=633.91 Aligned_cols=336 Identities=20% Similarity=0.235 Sum_probs=290.4
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHh---HHhchhhcCCcccccCcCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKE---ILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~---~v~~~~n~GG~~~lGS~R~k 170 (623)
.+||||+||||||||||++|+++++++...+++++||||++||+||+++++++|++. .++.++++||| +|||+|.+
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt-~LGtsR~~ 81 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGS-PIGNSRVK 81 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCc-eeccCCCC
Confidence 479999999999999999999999987766678999999999999999999999985 44559999997 99999987
Q ss_pred CC-------------ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCC
Q 006961 171 IR-------------TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVE 237 (623)
Q Consensus 171 ~~-------------t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie 237 (623)
+. .++.+++++++|++++||+||+||||||+++|++|++++.++|++++||||||||||||+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td-- 159 (403)
T PRK06555 82 LTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIR-- 159 (403)
T ss_pred ccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCcc--
Confidence 63 156789999999999999999999999999999999999999889999999999999999988
Q ss_pred CCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhh--------------------cCCcEEEECC
Q 006961 238 TNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQ--------------------SHPNMVILGE 297 (623)
Q Consensus 238 ~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLa--------------------t~pniilIpE 297 (623)
+|||||||+++++++|++|+.||.|++++++|||||||+|||||+.+||| ++||+|||||
T Consensus 160 ~t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE 239 (403)
T PRK06555 160 QSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPE 239 (403)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccC
Confidence 89999999999999999999999999987666699999999999999999 7899999999
Q ss_pred cchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhcc
Q 006961 298 EVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEF 377 (623)
Q Consensus 298 e~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~ 377 (623)
.+ ++++ .+++.|++++++ ++|+|||||||+....+. +++. +. .+
T Consensus 240 ~~----~~~e----~~~~~ik~~~~~-k~~~iIvVaEG~~~~~~~-----~~~~---~~------------------g~- 283 (403)
T PRK06555 240 MA----FDLE----AEAERLKAVMDE-VGNVNIFLSEGAGLDAIV-----AEME---AA------------------GE- 283 (403)
T ss_pred CC----CCHH----HHHHHHHHHHHh-CCCEEEEEeCCCCcccch-----hhhh---hc------------------cC-
Confidence 76 5554 456667777765 999999999999643221 1110 00 00
Q ss_pred ChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccce-eeeecCcccccCCCCCHHHHHHHHHH
Q 006961 378 LPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFN-AICHFFGYQARGSLPSKFDCDYAYVL 456 (623)
Q Consensus 378 lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~-~~~~~lGY~~R~~~PS~fD~~~a~~L 456 (623)
...+|++||+++.+++..++|++.|++++ | ++ +|...+||+||||.||+||+.||++|
T Consensus 284 ---------~~~~Da~G~~~l~~~~~g~~la~~i~~~~----------g--~e~~r~~~lGy~qRgg~psa~Dr~la~~l 342 (403)
T PRK06555 284 ---------EVKRDAFGHVKLDTINPGAWFAKQFAELL----------G--AEKVMVQKSGYFARSAPANAEDLRLIKSM 342 (403)
T ss_pred ---------ccccccccceecCCCcHHHHHHHHHHHHh----------C--CCceEEecCChhhcCCCCCHHHHHHHHHH
Confidence 12589999999999887777777765554 2 43 88999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEE---ecCCCCCCceeEEecchHhhhh
Q 006961 457 GHICYHILAAGLNGYMATV---TNLKNPANKWRCGAAPITSMMT 497 (623)
Q Consensus 457 G~~Av~li~~G~tG~mv~i---~n~~~~~~~w~~~~vPl~~~~~ 497 (623)
|..||+++++|.+| |+++ +|++ +..+||.+++.
T Consensus 343 G~~AV~~~~~G~sg-~v~~~~~~~g~-------~~~vp~~~~~~ 378 (403)
T PRK06555 343 VDLAVECALRGVSG-VIGHDEEQGGK-------LRAIEFPRIKG 378 (403)
T ss_pred HHHHHHHHHCCCCC-eEEEEeeeCCE-------EEEEEHHHHhc
Confidence 99999999999999 6777 7775 89999999864
No 22
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=4.5e-76 Score=618.66 Aligned_cols=302 Identities=24% Similarity=0.390 Sum_probs=270.2
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC-CCCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD-QIRT 173 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~-k~~t 173 (623)
+||||+||||||||||++|+++++.+. +.+++||||++||+||+++++++|+++.++.|+++||| +|||+|. ++++
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~--~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~ 77 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT-FLGSARFPEFKD 77 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe-eeccCCCCccCC
Confidence 589999999999999999999999876 45789999999999999999999999999999999997 9999997 4667
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 253 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I 253 (623)
++++++++++|++++||+|++||||||+++|++|+|+ +++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd--~t~Gf~TA~~~~~~~i 149 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTD--YTIGFDTALNTVVEAI 149 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCc--cCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999985 4899999999999999998 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 254 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 254 ~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
++++.++.|+ ++|||||+|||+|||||++||||++||+|||||++ ++++ ++++.|++|+++|++|+|||||
T Consensus 150 ~~i~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~ga~~iliPE~~----~~~~----~~~~~i~~~~~~g~~~~vivva 220 (317)
T cd00763 150 DRIRDTSSSH-QRISVVEVMGRHCGDIALAAGIAGGAEFIVIPEAE----FDRE----EVANRIKAGIERGKKHAIVVVA 220 (317)
T ss_pred HHHHHHHhcC-CCEEEEEeCCCChHHHHHHHHHHcCCCEEEeCCCC----CCHH----HHHHHHHHHHHcCCCcEEEEEe
Confidence 9998766665 56999999999999999999999999999999986 5554 4555667888889999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 334 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 334 EGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
||+... + -|++++
T Consensus 221 EG~~~~--------~---------------------------------------------------------~l~~~l-- 233 (317)
T cd00763 221 EGVYDV--------D---------------------------------------------------------ELAKEI-- 233 (317)
T ss_pred CCCCCH--------H---------------------------------------------------------HHHHHH--
Confidence 998531 0 022233
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchH
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 493 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~ 493 (623)
+++. | +++|...+||+||||.||+||+.+|++||..|++++++|++|+|+++++.+ +..+||.
T Consensus 234 --~~~~------g--~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~mv~~~~~~-------~~~~pl~ 296 (317)
T cd00763 234 --EEAT------G--FETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNEQ-------LVHHDII 296 (317)
T ss_pred --HHHh------C--CCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEecHH
Confidence 3322 2 788899999999999999999999999999999999999999999999984 8999999
Q ss_pred hhhhhcc
Q 006961 494 SMMTVKR 500 (623)
Q Consensus 494 ~~~~~e~ 500 (623)
++++.+|
T Consensus 297 ~~~~~~k 303 (317)
T cd00763 297 DAIENMK 303 (317)
T ss_pred HHhhCCC
Confidence 9987544
No 23
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=5.4e-72 Score=640.83 Aligned_cols=355 Identities=18% Similarity=0.263 Sum_probs=303.8
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcC--CeeecCHhHHhchhhcCCcccccCcCCC-C
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ-I 171 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GG~~~lGS~R~k-~ 171 (623)
+||||+||||||||||++|+++++.+. +.+.+||||++||+||+++ ++++|++++|+.|+++||| +|||+|.+ +
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~--~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~LGtsR~~~~ 77 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAI--YVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT-IIGTARCKEF 77 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc-eecCCCCCcc
Confidence 589999999999999999999999875 5589999999999999999 9999999999999999996 99999987 6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH-----------------HHhcCCCCeEEEeeecccCCCCCC
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGDLKNQ 234 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~-----------------~~~~g~~i~VIGVPKTIDNDl~~~ 234 (623)
++++.+++++++|++++||+||+||||||+++|+.|+++ .++++.+++|||||||||||++++
T Consensus 78 ~~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gT 157 (745)
T TIGR02478 78 RERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGT 157 (745)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCC
Confidence 677889999999999999999999999999999987763 345566899999999999999999
Q ss_pred CCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHH
Q 006961 235 FVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQIC 314 (623)
Q Consensus 235 ~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~ 314 (623)
| +|||||||+++++++|++++.+|.||+| +||||||||+||||||++|||++||+|||||+++. .. +.++|+
T Consensus 158 d--~TiGfdTA~~~i~~aid~i~~ta~Sh~R-~fvvEvMGR~~G~LAl~aalA~gad~iliPE~~~~----~~-~~~~i~ 229 (745)
T TIGR02478 158 D--MTIGADSALHRICEAIDAISSTAQSHQR-AFVVEVMGRHCGYLALMAAIATGADYVFIPERPPE----EG-WEDQLC 229 (745)
T ss_pred c--CCCCHHHHHHHHHHHHHHHHhhhhccCC-EEEEEEcCccccHHHHHHHhccCCCEEEecCCCCC----ch-HHHHHH
Confidence 8 9999999999999999999999999865 89999999999999999999999999999998743 22 688999
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCC
Q 006961 315 DAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDD 394 (623)
Q Consensus 315 ~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~G 394 (623)
+.+++++.+||+|+|||||||+.+. +|
T Consensus 230 ~~l~~~~~~gk~~~iIvvaEG~~d~-----------------------------------------------------~g 256 (745)
T TIGR02478 230 HKLKRNRKAGKRKNIVIVAEGAIDR-----------------------------------------------------DL 256 (745)
T ss_pred HHHHHHHHcCCCcEEEEEeCCcccc-----------------------------------------------------cC
Confidence 9999988899999999999999742 23
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---ce
Q 006961 395 SAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN---GY 471 (623)
Q Consensus 395 n~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~t---G~ 471 (623)
|+.. +..|++.|+++. | +++|...|||.||||.||+||+.+|+.||..||+++++|.+ |+
T Consensus 257 ~~i~---------~~~l~~~l~~~~------g--~~~R~~~LGh~QRgg~Psa~Dr~la~~~G~~Av~~~~~g~~~~~~~ 319 (745)
T TIGR02478 257 NPIT---------SEDVKDVLVERL------G--LDTRITVLGHVQRGGAPSAYDRILATRQGVEAVLAVLESTPETPSP 319 (745)
T ss_pred Cccc---------HHHHHHHHHHhc------C--CceEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 3221 123444454432 3 78999999999999999999999999999999999999987 99
Q ss_pred EEEEecCCCCCCceeEEecchHhhhhhccccCCCCCCCCCcceeee---eEEcCCChHHHHHHHHhhhccccCcccC
Q 006961 472 MATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINP---ATVDMRGKAYELLRQNATRFLLDDLYRN 545 (623)
Q Consensus 472 mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~g~~~~~~~~p~i~~---~~Vdl~g~~f~~~~~~r~~w~~~d~y~~ 545 (623)
|+++++. ++..+||.++++.+| .-. +..+.+ .-++|.|..|...-..-......+....
T Consensus 320 mv~~~~~-------~~~~~pl~~~~~~~k-~v~-------~~~~~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~~~~ 381 (745)
T TIGR02478 320 VISLRGN-------KIVRKPLVEAVAQTK-TVA-------KAIKEKRFAEAMRLRGREFVENLATFLFLSIPDQDKK 381 (745)
T ss_pred EEEEECC-------EEEEEeHHHHHhhcC-CCC-------HHHHhccHHHHHHhcCHHHHHHHHHHHhhhccCCccc
Confidence 9999995 499999999999776 211 111222 2466889888877666666666655444
No 24
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.1e-71 Score=635.78 Aligned_cols=356 Identities=18% Similarity=0.251 Sum_probs=299.8
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcC--CeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
..+||||+||||||||||++|+++++.+. +.+.+||||++||+||+++ ++.+|+|++|+.|+++||| +|||+|.+
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~--~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT-~LGTsR~~ 78 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI--YVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGT-IIGSARCK 78 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCC-cccCCCCC
Confidence 35799999999999999999999999875 5689999999999999999 7899999999999999997 99999987
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH-----------------HHHHhcCCCCeEEEeeecccCCCC
Q 006961 171 -IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA-----------------ETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 171 -~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~La-----------------e~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+++.+++++++++|++++||+||+||||||+++|..|+ ++.++++..++|||||||||||++
T Consensus 79 ~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 79 EFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 66778999999999999999999999999999999764 233345568999999999999999
Q ss_pred CCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHH
Q 006961 233 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQ 312 (623)
Q Consensus 233 ~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~ 312 (623)
+|| +|||||||+++++++|++|+.||.||+| +||||||||+||||||++|||++||+|||||.++. +++.++
T Consensus 159 gTD--~TiGfdTAl~~i~eaId~i~~tA~Sh~R-~fVVEvMGR~~G~LAl~aglA~gAd~ilIPE~p~~-----~~~~~~ 230 (762)
T cd00764 159 GTD--MTIGTDSALHRICEVVDAITTTAQSHQR-TFVLEVMGRHCGYLALVSGLATGADWIFIPERPPE-----DGWEDQ 230 (762)
T ss_pred CCc--CCCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCCCchHHHHHHHhccCCCEEEecCCCCc-----hhHHHH
Confidence 998 9999999999999999999999999975 79999999999999999999999999999998743 456899
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCC
Q 006961 313 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPES 392 (623)
Q Consensus 313 I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~ 392 (623)
|++.+++|+.+||+|+|||||||+.+..
T Consensus 231 i~~~l~~~~~~gk~~~iIVVaEGa~d~~---------------------------------------------------- 258 (762)
T cd00764 231 MCRRLSEHRSRGKRLNIIIVAEGAIDDQ---------------------------------------------------- 258 (762)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCcccc----------------------------------------------------
Confidence 9999999999999999999999997531
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---
Q 006961 393 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN--- 469 (623)
Q Consensus 393 ~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~t--- 469 (623)
|+.. + +..|++.|+++. | +++|...|||.||||.||+|||.||+.||..||+++++|.+
T Consensus 259 -g~~i-----~----~~~l~~~l~~~~------g--~d~R~t~LGh~QRGG~Psa~Dr~la~~~G~~AV~~l~~g~~~~~ 320 (762)
T cd00764 259 -LKPI-----T----SEDVKDLVVERL------G--LDTRVTTLGHVQRGGTPSAFDRILASLMGVEAVMALLEATPDTP 320 (762)
T ss_pred -CCCc-----c----HHHHHHHHHHhc------C--CCeeEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 2211 1 123455555443 3 88999999999999999999999999999999999999986
Q ss_pred ceEEEEecCCCCCCceeEEecchHhhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHHHHhhhccccC
Q 006961 470 GYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDD 541 (623)
Q Consensus 470 G~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d 541 (623)
++|++++|++ +..+||.++++..| .-.... ..| =-..-++|.|..|+..-+........|
T Consensus 321 ~~~i~~~~~~-------i~~~pl~e~v~~~k-~v~~~~--~~~--~~~~a~~lr~~~f~~~~~~~~~~~~~~ 380 (762)
T cd00764 321 ACVVSLNGNK-------AVRLPLMECVQLTK-DVQKAM--DEK--RFDEAAALRGKSFDKNWNLYKLLAIEL 380 (762)
T ss_pred CEEEEEECCE-------EEEEEHHHHHhhcc-chhhhh--hhh--hHHHHHHhcchhHHHHHHHHHhccccC
Confidence 8999999986 89999999988655 111000 000 011125677888876665555555544
No 25
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=2.1e-71 Score=575.84 Aligned_cols=281 Identities=27% Similarity=0.442 Sum_probs=247.8
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC-CCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 173 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k-~~t 173 (623)
|||||++|||||||||++|+++++++. +.+++||||++||+||+++++++|++++++.++++||+ +|||+|.+ +++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~--~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~lgtsR~~~~~~ 77 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAI--RRGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGT-ILGTSRFKPFKD 77 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHH--HTTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSS-TTTBBBSSGGGS
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHH--hcCCEEEEEEccCccceeeeEEeecccCccccccCCCc-EeCcccCccccc
Confidence 699999999999999999999999876 46899999999999999999999999999999999997 99999986 667
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 253 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I 253 (623)
++.+++++++|++++||+||+||||||+++|+.|+|++. ++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd--~siGf~TA~~~~~~~i 150 (282)
T PF00365_consen 78 PEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTD--YSIGFDTAVNYIAEAI 150 (282)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSS--S-BTHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCC--CCcccCchhHHHHHHH
Confidence 888999999999999999999999999999999998764 899999999999999988 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 254 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 254 ~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
++++.+|.|++ +|||||+|||+|||||++||||++||+|||||++ ..++.+++.|++|.+++|+|++||||
T Consensus 151 ~~i~~~a~s~~-rv~ivEvmGr~~G~LAl~~ala~~a~~ilipE~~--------~~~~~~~~~i~~~~~~~k~~~iVvvs 221 (282)
T PF00365_consen 151 DNIKTTARSHN-RVFIVEVMGRNAGWLALAAALATGADLILIPEEP--------FDLDELLDDIKKRYERGKRYGIVVVS 221 (282)
T ss_dssp HHHHHHHHHST-EEEEEEESSTTSTHHHHHHHHHHTSSEEEBTTSH--------HHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHhhcccC-CceEEEeCCCCcCHHHHHHHhccCCCEEEEeccc--------cchHHHHHHhhhhhcccCceEEEEec
Confidence 99999998875 5999999999999999999999999999999976 13678888899999899999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 334 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 334 EGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
||+.+..|-. .+++++
T Consensus 222 EG~~~~~~i~----------------------------------------------------------------~~~~~~ 237 (282)
T PF00365_consen 222 EGAKDGQPIS----------------------------------------------------------------SEFIKE 237 (282)
T ss_dssp TTSBSSHBHH----------------------------------------------------------------HHHHHH
T ss_pred cccccccccc----------------------------------------------------------------cccccc
Confidence 9998632210 112222
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAA 466 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~ 466 (623)
.+++.. | +++|...|||.||||.||++||.+|..||..|++++.+
T Consensus 238 ~~~~~~------~--~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 238 LLEEGL------G--FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp HHHHTT------T--SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccc------c--cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 222221 3 89999999999999999999999999999999999864
No 26
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=2.1e-69 Score=619.50 Aligned_cols=319 Identities=18% Similarity=0.271 Sum_probs=282.7
Q ss_pred CCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 91 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
..+++||||++|||||||||++|+++++++. +.+++||||++||+||+++++.+|++..++.|+++||| +|||+|..
T Consensus 386 ~~~~~rIaIltsGG~apGmNaair~vv~~a~--~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 462 (745)
T TIGR02478 386 KASRLRIAIIHVGAPAGGMNAATRSAVRYAI--ARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNREL 462 (745)
T ss_pred CCCceEEEEEecCCCchhHHHHHHHHHHHHH--hCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCC
Confidence 3556899999999999999999999999875 45889999999999999999999999999999999997 99999985
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-CCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
. ++++++++++|++++||+||+||||||+++|.+|+++..+. +.+++||||||||||||+++| +|||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~t~GfdTA~~~~ 538 (745)
T TIGR02478 463 P--GKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTE--YSLGSDTALNEI 538 (745)
T ss_pred c--hhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCc--cCCCHHHHHHHH
Confidence 4 67899999999999999999999999999999999985433 357999999999999999988 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcC-CCeE
Q 006961 250 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQD-KNHG 328 (623)
Q Consensus 250 s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~g-k~~g 328 (623)
+++|++++.+|.|++++|||||+|||+|||||++||||++||+|||||+. ++++++.+++.. +.+|+..+ ++++
T Consensus 539 ~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~gad~iliPE~~----~~~~~l~~~v~~-i~~~~~~~~~~~~ 613 (745)
T TIGR02478 539 TEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEEG----ISLKDLQEDIEH-LKEKFAHGNRAGK 613 (745)
T ss_pred HHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcCCCEEEeCCCC----CCHHHHHHHHHH-HHHHHhcCCCCce
Confidence 99999999999999878999999999999999999999999999999986 788887776554 66788888 8999
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHH
Q 006961 329 VILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLA 408 (623)
Q Consensus 329 VIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~ 408 (623)
+|+++||+.+..+ ...|+
T Consensus 614 iiv~~Eg~~~~~~--------------------------------------------------------------~~~l~ 631 (745)
T TIGR02478 614 LILRNENASKNYT--------------------------------------------------------------TDFIA 631 (745)
T ss_pred EEEEeCCCccCCC--------------------------------------------------------------HHHHH
Confidence 9999999854211 11245
Q ss_pred HHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC------------CCceEEEEe
Q 006961 409 HLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAG------------LNGYMATVT 476 (623)
Q Consensus 409 ~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G------------~tG~mv~i~ 476 (623)
++++++++ +. |++|...|||+||||.||+||+.+|++||..|++++.+| .+|+|++++
T Consensus 632 ~~i~~e~~---------~~-~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~ 701 (745)
T TIGR02478 632 RIISEEAK---------GR-FDARTAVLGHMQQGGSPSPFDRNRATRLAIRAVDFIEEKIKKSADKLGADDTSAVVIGIR 701 (745)
T ss_pred HHHHHHhc---------CC-CceEeccCCccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccCCCccEEEEEE
Confidence 55544432 11 899999999999999999999999999999999999998 799999999
Q ss_pred cCCCCCCceeEEecchHhhhhhcc
Q 006961 477 NLKNPANKWRCGAAPITSMMTVKR 500 (623)
Q Consensus 477 n~~~~~~~w~~~~vPl~~~~~~e~ 500 (623)
|.+ +..+||.++|+.+.
T Consensus 702 ~~~-------~~~~p~~~~~~~~~ 718 (745)
T TIGR02478 702 GSN-------VLFTPVKGLLAKET 718 (745)
T ss_pred CCE-------EEEEEHHHHHhhcc
Confidence 986 89999999775443
No 27
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.4e-65 Score=585.63 Aligned_cols=313 Identities=16% Similarity=0.207 Sum_probs=275.7
Q ss_pred CCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 91 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
+.+++||||++|||||||||++|+++++++. +.+++||||++||+||+++++++|+|++++.|.++||| +|||+|.+
T Consensus 386 ~~~~~~IaIltsGG~apGmNaairavv~~a~--~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~~ 462 (762)
T cd00764 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGL--AHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRTL 462 (762)
T ss_pred cccccEEEEEecCCCchhHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCCC
Confidence 3445899999999999999999999998865 55899999999999999999999999999999999997 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-CCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
. ++++++++++|++++||+||+||||||+++|..|+++..+. ..+++|||||||||||++++| +|||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd--~siGfdTAln~~ 538 (762)
T cd00764 463 P--KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTD--FSLGSDTALNAL 538 (762)
T ss_pred c--HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCc--CCCCHHHHHHHH
Confidence 5 57999999999999999999999999999999999976443 357999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHH---HHHHHHHHHHHHHcCCC
Q 006961 250 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDL---TKQICDAVQARAEQDKN 326 (623)
Q Consensus 250 s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~i---v~~I~~~I~~R~~~gk~ 326 (623)
+++|++|+.+|.|+++++||||||||+|||||+++|||++||+|||||++ ++++++ ++.+++.++++...|+.
T Consensus 539 ~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~GAd~i~iPE~~----~~~~~l~~dv~~l~~~~~~~~~~g~~ 614 (762)
T cd00764 539 MKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVGADAAYVFEEP----FNIRDLQENVEHLTEKMKTTIGRGLV 614 (762)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcCCCEEEeCCCC----CCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999998878999999999999999999999999999999986 567776 44456778888888999
Q ss_pred eEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHH
Q 006961 327 HGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKL 406 (623)
Q Consensus 327 ~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~l 406 (623)
+.+++++||+... .
T Consensus 615 ~~~~~~se~~~~~------------------------------------------------------------------~ 628 (762)
T cd00764 615 LRNEKCNENYTTV------------------------------------------------------------------F 628 (762)
T ss_pred EeeeeeecCCccc------------------------------------------------------------------c
Confidence 9999999998310 0
Q ss_pred HHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------Cce
Q 006961 407 LAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL---------------NGY 471 (623)
Q Consensus 407 L~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~---------------tG~ 471 (623)
++++++++++. + |++|..+|||.||||.||+|||.+|++||..|++++.++. +.+
T Consensus 629 ~~~~~~~~~~~--------~--~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~~~~~~~~~~~~~~~~~~~ 698 (762)
T cd00764 629 TYELYSEEGKG--------V--FDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPDFNC 698 (762)
T ss_pred HHHHHHHHHhc--------C--CceEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCceE
Confidence 12233334321 2 9999999999999999999999999999999999999853 678
Q ss_pred EEEEecCCCCCCceeEEecchHhhhh
Q 006961 472 MATVTNLKNPANKWRCGAAPITSMMT 497 (623)
Q Consensus 472 mv~i~n~~~~~~~w~~~~vPl~~~~~ 497 (623)
++++++.. +...|+.+|..
T Consensus 699 ~ig~~~~~-------~~~~~~~~~~~ 717 (762)
T cd00764 699 VNGVKKYA-------VLFEPVEELKQ 717 (762)
T ss_pred EEEEeCCE-------EEEeeHHHHHH
Confidence 88888875 77788888866
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-62 Score=539.61 Aligned_cols=587 Identities=24% Similarity=0.203 Sum_probs=506.8
Q ss_pred CCCCcccccchhHHHhhcccCCCccCcCC-CceeeecCCCcccCCCCChhHHhhhCCCcCCCCc---eeEecCccCCCCc
Q 006961 11 DPQSFHFWDIALLAIYLLQMFSFNANMQG-TTVRVEFGDSTTTADPADTHSISRSFPHTYGQPL---AHFLRATAKVPDA 86 (623)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~p~lp~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~---~~~~~~~~~~~~~ 86 (623)
+++++..+..++..++++++|..+..+.. ..++...|.. . +..+.+++.||++++.+. +++.+.. |++
T Consensus 41 ~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~---~--aa~~~i~~~i~~l~~~ggdgsl~ga~~~---p~e 112 (666)
T KOG2440|consen 41 RGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRL---A--AADNLIARGIPNLVVIGGDGSLTGARAF---PRE 112 (666)
T ss_pred ccccchhhcchhhhCCcccCCCccccccccccccccccee---c--cchhHHHhhcCeeEecCCccchhHhhhC---chh
Confidence 45578999999999998888877777753 2244444432 2 567899999998887664 5555554 999
Q ss_pred ccccCCCceEEEEEecCCCCCchHHHHHHHHHHHH-hcCCCCEEEEE----------------ccChhhhhcCCeeecC-
Q 006961 87 QIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALK-LHNPKSTLLGF----------------LGGSEGLFAQKTLEVT- 148 (623)
Q Consensus 87 ~~~~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~-~~~~~~~v~Gf----------------~~G~~GL~~~~~~eLt- 148 (623)
..++..+..+.||||+||+|||+|+||+|++-.+. ..+.-.+.+|. ..|++||+..++.++.
T Consensus 113 ~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg 192 (666)
T KOG2440|consen 113 WIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCG 192 (666)
T ss_pred ccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccc
Confidence 99999999999999999999999999998876653 23334455554 4559999999995554
Q ss_pred -HhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 149 -KEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 149 -~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
...+..++..+++ +++ .+.+.+++|++.++++.++++++|.+|||||++++++|..++|+++++.+++.|++|||||
T Consensus 193 ~lalv~~ia~~aD~-i~~-pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~Ti 270 (666)
T KOG2440|consen 193 YLALVAAIAGGADT-IFI-PERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTI 270 (666)
T ss_pred hHHHHHHhhcCCCE-EEe-cCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeee
Confidence 5567777766664 444 4445566999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcChh--hHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcE-EEECCcchhccC
Q 006961 228 NGDLKNQFVETNVGFD--TICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNM-VILGEEVAASKL 304 (623)
Q Consensus 228 DNDl~~~~ie~S~GFd--TA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pni-ilIpEe~~~~~~ 304 (623)
|||++.-+ .++||| |||+..+++|.+++.+|.|+.++++|||+|||.|+|+|++|++|++++. |++|| ....++
T Consensus 271 lGdvqrgg--~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~e-lr~~~f 347 (666)
T KOG2440|consen 271 LGDVQRGG--VPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPE-LRGRKF 347 (666)
T ss_pred cCccccCC--cccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhh-hcchhh
Confidence 99999777 566665 9999999999999999999999999999999999999999999999855 55555 667788
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCC--ccccccCChhhhhhhccChhHH
Q 006961 305 TLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV--DNISSQLSPWASALFEFLPPFI 382 (623)
Q Consensus 305 tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~--~~~~~~ls~~s~~lf~~lp~~i 382 (623)
++......+++.+..|..+..+|+. +++|++.+.+..+.|.++++.++..+... +-+..+++.|..+. +++|+.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~-d~~~~~~ 424 (666)
T KOG2440|consen 348 TLNLNTYKILDVVDPRAEQDPFYGE--IPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAK-DALGELI 424 (666)
T ss_pred hhhhhHHhhhhccccccccCCCCce--eccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhh-hhhhhhH
Confidence 9999999999999999988899999 99999999999999999999877555432 34677888887777 9999999
Q ss_pred HhhhhcCCCCCCCcccchhhh-HHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHH
Q 006961 383 KKQLLLQPESDDSAQLSQIET-EKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICY 461 (623)
Q Consensus 383 ~~~l~~~rD~~Gn~~ls~I~t-e~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av 461 (623)
.+++....+.+|+.+..+++| |++...+|+.++.+|+-++.|.+..|.+..++++|++|++.|+.||..||+..+..+-
T Consensus 425 ~~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~sn 504 (666)
T KOG2440|consen 425 WKDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSN 504 (666)
T ss_pred HHHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecC
Confidence 999999999999999999998 8999999999999999999888866999999999999999999999999999999988
Q ss_pred HHHHcCCCceEEEEecCCCCCCceeEEecchHhhhhhccccCCCC--CCCCC---cceeeeeEEcCCChHHHHHHHHhhh
Q 006961 462 HILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPG--ASSIG---RPAINPATVDMRGKAYELLRQNATR 536 (623)
Q Consensus 462 ~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~~r~g~~--~~~~~---~p~i~~~~Vdl~g~~f~~~~~~r~~ 536 (623)
..-..+.++.+.+..|.-.+..+|.....+++..+..+.+-.|+. ....+ .|.+.++.|..++.+|+.|++.++.
T Consensus 505 nvpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~ga~~a~v~e~~~~~~~l~~~~~~ 584 (666)
T KOG2440|consen 505 NVPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAPGADAAYVPEEGFSIKDLRENAEH 584 (666)
T ss_pred CccccccccccchhHhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccccccccccccccccHHHHHHHHHH
Confidence 888888999999999999999999999999999998777323311 22233 7999999999999999999999999
Q ss_pred ccccCcccCCCcccccCCCCCCCcceeEecccchhhhHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHh
Q 006961 537 FLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSA 613 (623)
Q Consensus 537 w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~~~~~y~~~~~~~~~~~~~~~~~~~~g~~~~~l~~a~~~~~~~~~~~~~ 613 (623)
|++++.|.+|+|+||.+|.+|...-|+++++..|.++.+..+.+++.+..+-++||+.++.+++.+-|.+....+-.
T Consensus 585 ~~~k~~~~~~~~l~~r~e~a~~~~~t~~~~~~~~~~~~~~f~~~~~~~gh~qqgg~ps~~dr~~~~~m~~~a~~~~~ 661 (666)
T KOG2440|consen 585 LAEKMRYGNPRGLQLRNEGADANYTTLFLENIYSEEGKGKFQARTNVLGHIQQGGSPSPFDRNMGTKMAVKAIELIT 661 (666)
T ss_pred HHHHhhhcCCCceEEeCCCcchhhhHHHHHHHHhhhcccccceeeccccceecCCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765544
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=329.88 Aligned_cols=305 Identities=18% Similarity=0.226 Sum_probs=251.9
Q ss_pred EEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCC--eeecCHhHHhchhhcCCcccccCcCCC-CCChH
Q 006961 99 IVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK--TLEVTKEILSTYKNQGGYDMLGRTKDQ-IRTTE 175 (623)
Q Consensus 99 Iv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~--~~eLt~~~v~~~~n~GG~~~lGS~R~k-~~t~e 175 (623)
|+||||++||||++++.+++... +.+.++|+++.||.|++++. +.+++|+.++.+...||+ ++|+.|.+ +...+
T Consensus 1 v~tsggd~~gmnaavr~~vr~~i--~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt-~~g~ar~~~f~~~~ 77 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRMGI--YRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGT-LIGTARCKAFRGRE 77 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHhcc--ccCceEEEEecccccccccccchhhcchhhhCCcccCCCc-cccccccccccccc
Confidence 68999999999999999999754 88999999999999999965 779999999999999997 99998865 77888
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHH-----------------hcCCCCeEEEeeecccCCCCCCCCCC
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA-----------------EAKCPTKVVGVPVTLNGDLKNQFVET 238 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~-----------------~~g~~i~VIGVPKTIDNDl~~~~ie~ 238 (623)
.+.++..++-+.+|+.|+++|||+|++.|+.+-+++. ..+..+.++|++.|||||+.+++ .
T Consensus 78 gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~--~ 155 (666)
T KOG2440|consen 78 GRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTD--M 155 (666)
T ss_pred ceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccc--e
Confidence 9999999999999999999999999999998765542 14567899999999999999998 9
Q ss_pred CcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHH
Q 006961 239 NVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQ 318 (623)
Q Consensus 239 S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~ 318 (623)
++|-|||+.- ++|+.|..++.|+.| -|++|+|||+|||+|+-.++|+++|.+++||.++.. .+++|+.+.
T Consensus 156 ~iG~dsal~r--e~id~~~~ta~sh~R-gFv~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~-------~~q~~~~l~ 225 (666)
T KOG2440|consen 156 TIGIDSALHR--EAIDAITSTAQSHSR-GFVAEVMGRHCGYLALVAAIAGGADTIFIPERPGED-------PEQLCEILD 225 (666)
T ss_pred eeccccchhh--hhhhhhhhhhccCcc-eEEeeehhhccchHHHHHHhhcCCCEEEecCCCCCC-------HHHHHHHHH
Confidence 9999999998 999999999999987 489999999999999999999999999999987542 344444444
Q ss_pred HHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCccc
Q 006961 319 ARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQL 398 (623)
Q Consensus 319 ~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~l 398 (623)
.-.++| .-+|+|.||.++.-.. .
T Consensus 226 ~~r~~G--ln~viVigG~~~~~ga-----------------------------------------------------~-- 248 (666)
T KOG2440|consen 226 SIRKRG--LNIVIVIGGAIDNTGA-----------------------------------------------------P-- 248 (666)
T ss_pred HHHhCC--CCEEEEEecccCCCCC-----------------------------------------------------c--
Confidence 333344 6688999999875221 1
Q ss_pred chhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecC
Q 006961 399 SQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNL 478 (623)
Q Consensus 399 s~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~ 478 (623)
++++-|+++.-++. + +.++.+++||.||++.|++||+.+|..+|+.|+..++....- ++++.
T Consensus 249 -------i~ae~vk~~~~k~l------v--~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s---~~~g~ 310 (666)
T KOG2440|consen 249 -------IIAEEVKERKLKVL------V--VGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES---AENGN 310 (666)
T ss_pred -------ccHHHHHHhhhhee------e--ecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchh---hcccc
Confidence 12333444444432 2 788999999999999999999999999999999988876543 33333
Q ss_pred CCCCCceeEEecchHhhhhhcc
Q 006961 479 KNPANKWRCGAAPITSMMTVKR 500 (623)
Q Consensus 479 ~~~~~~w~~~~vPl~~~~~~e~ 500 (623)
. +...|+.+...+.+
T Consensus 311 ~-------~VRlmgr~~~~it~ 325 (666)
T KOG2440|consen 311 G-------IVRLMGRESVHITL 325 (666)
T ss_pred e-------eEEehhHHHHHHHH
Confidence 2 66677766655433
No 30
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.73 E-value=1.2 Score=46.80 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHcC-------CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH
Q 006961 174 TEQVNAALTACKNLN-------LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 246 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~-------Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~ 246 (623)
.+-.+++.+.|++++ .|.+|+||||||+-.|+..... ...+++|+||. . -++||-|..
T Consensus 14 ~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN----------~--G~lGFL~~~ 78 (265)
T PRK04885 14 KRVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVH----------T--GHLGFYTDW 78 (265)
T ss_pred HHHHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEe----------C--CCceecccC
Confidence 334455555565543 6899999999999887765431 11368999997 2 479999974
Q ss_pred H--HHHHHHHHHH
Q 006961 247 K--VNSQLISNVC 257 (623)
Q Consensus 247 ~--~~s~~I~ni~ 257 (623)
+ .+-+.+.++.
T Consensus 79 ~~~~~~~~l~~i~ 91 (265)
T PRK04885 79 RPFEVDKLVIALA 91 (265)
T ss_pred CHHHHHHHHHHHH
Confidence 3 3455555554
No 31
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=89.95 E-value=0.68 Score=48.07 Aligned_cols=55 Identities=22% Similarity=0.116 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHcCC------CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhH
Q 006961 174 TEQVNAALTACKNLNL------DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 245 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~I------d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA 245 (623)
++-.+.+-+..+++++ |.+++||||||+-.|+.... +..++|+||-. -++||-|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~------------G~lGFL~~ 65 (246)
T PRK04761 5 PEAQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR------------GSVGFLMN 65 (246)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC------------CCCCcccC
Confidence 3444455556667777 99999999999988776532 23589999962 36899874
No 32
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.93 E-value=1.2 Score=47.20 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=39.1
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~ 257 (623)
+.|.+|+||||||+-.|+.... +.+++|+||- . -++||-|.. +.+.+++.++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN----------~--G~lGFLt~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIH----------A--GHLGFLTDITVDEAEKFFQAFF 118 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEe----------C--CCcccCCcCCHHHHHHHHHHHH
Confidence 6899999999999877776542 2368999995 2 489999874 44555666654
No 33
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.40 E-value=0.58 Score=48.94 Aligned_cols=56 Identities=23% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCC-----CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH
Q 006961 175 EQVNAALTACKNLNL-----DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247 (623)
Q Consensus 175 e~~~~i~~~l~~~~I-----d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~ 247 (623)
+-.++..+.++.+++ |.+|+||||||+-.|+..+. +.+++|+||- . -++||-|..+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN----------~--G~lGFL~~~~ 75 (259)
T PRK00561 15 PVLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGIN----------T--GHLGFYTSFN 75 (259)
T ss_pred HHHHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEe----------c--CCCccccccC
Confidence 334445555555555 99999999999988776543 3468999996 2 3799998543
No 34
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=89.16 E-value=0.67 Score=50.05 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcC-hhhHHHHHH
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVG-FDTICKVNS 250 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~G-FdTA~~~~s 250 (623)
.|.++-..+++.+.++++|-+++.|||||.+.++.-. +-+++|+|||.=.-| -.| |-+.=..++
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~---------~SgvfA~~P~~aa 148 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKN---------YSGVFALSPEDAA 148 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeeccccce---------eccccccChHHHH
Confidence 3567888899999999999999999999988865432 447999999954433 223 444445555
Q ss_pred HHHHHHHH
Q 006961 251 QLISNVCT 258 (623)
Q Consensus 251 ~~I~ni~~ 258 (623)
.+...++.
T Consensus 149 ~l~~~~lk 156 (355)
T COG3199 149 RLLGAFLK 156 (355)
T ss_pred HHHHHHhc
Confidence 55555543
No 35
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=89.06 E-value=21 Score=34.79 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=68.9
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
+||+++.+...|-.+.++.|+-+.++.. +.++.-+ .. . .+++
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~--g~~l~~~--------------------------------~~---~-~~~~ 42 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA--GYQVLLA--------------------------------NS---Q-NDAE 42 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHc--CCeEEEE--------------------------------eC---C-CCHH
Confidence 5899998888899999999998887641 1211100 00 0 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHH
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 255 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~n 255 (623)
...+.++.+.+.++|++|+.+.+.+... ..+.+.+. +++||.+-.+.+.. ... .++++|.. +....+..-
T Consensus 43 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~--~ip~v~~~~~~~~~--~~~--~~v~~d~~-~~~~~~~~~ 112 (264)
T cd01537 43 KQLSALENLIARGVDGIIIAPSDLTAPT---IVKLARKA--GIPVVLVDRDIPDG--DRV--PSVGSDNE-QAGYLAGEH 112 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcchh---HHHHhhhc--CCCEEEeccCCCCC--ccc--ceEecCcH-HHHHHHHHH
Confidence 5566777777789999999988776544 23334334 47888876665541 122 56777654 233333333
Q ss_pred H
Q 006961 256 V 256 (623)
Q Consensus 256 i 256 (623)
+
T Consensus 113 l 113 (264)
T cd01537 113 L 113 (264)
T ss_pred H
Confidence 3
No 36
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.56 E-value=2.4 Score=44.11 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=36.8
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHH--HHHHHHHHH
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV--NSQLISNVC 257 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~--~s~~I~ni~ 257 (623)
.+.|.+|+||||||+-.|+... +++|+||- . -++||-|.... +-+++.++.
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin----------~--G~lGfl~~~~~~~~~~~l~~~~ 92 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFK----------A--GRLGFLSSYTLEEIDRFLEDLK 92 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEe----------C--CCCccccccCHHHHHHHHHHHH
Confidence 3679999999999998876643 48999996 2 37899987543 344555543
No 37
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=86.03 E-value=0.65 Score=48.88 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=41.9
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHHH
Q 006961 182 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVCT 258 (623)
Q Consensus 182 ~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~~ 258 (623)
......+.|.+|++|||||+..|+.... +.+++|+||+. -+.||-|.. +.+.+++..+..
T Consensus 70 ~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~------------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 70 EEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT------------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp HHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES------------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC------------CCccccccCCHHHHHHHHHHHhc
Confidence 4456789999999999999999887643 34699999993 355665542 445555555553
No 38
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.59 E-value=1.8 Score=46.04 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=40.7
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVCT 258 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~~ 258 (623)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|.. +.+.++++++..
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT------------GRLGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec------------CCCCcccccCHHHHHHHHHHHHc
Confidence 6899999999999888776543 23689999962 478999986 456666666653
No 39
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.66 E-value=1.8 Score=46.29 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=38.7
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~ 257 (623)
+.|.+|+||||||+-.|+.... ..+++|+||- . -++||-|.. +.+.+.+.++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN----------~--G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTIN----------T--GHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEe----------C--CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999988876543 3468999994 1 389999874 34445555553
No 40
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.82 E-value=2.1 Score=45.57 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=39.5
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~ 257 (623)
+.|.+|++|||||+-.|+.... ...++|+||- . -++||-|.. +.+.+.+.++.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN----------~--G~lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGIN----------Q--GHLGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEe----------c--CCCeEeeccCHHHHHHHHHHHH
Confidence 6899999999999998887643 2368999996 1 379999974 44555555554
No 41
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.64 E-value=2.7 Score=44.75 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=33.8
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~ 247 (623)
+.|.+|++|||||+-.|+.... +.+++|+||-. -++||-|..+
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~------------G~lGFl~~~~ 105 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR------------GNLGFLTDLD 105 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC------------CCCCcccccC
Confidence 6899999999999988876543 23589999962 3789988765
No 42
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=82.88 E-value=2.3 Score=48.39 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=39.3
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~ 257 (623)
++|.+|+||||||+-.|+.+.. +..++|+||- . -++||-|.. +.+-+.+.++.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~--G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------M--GSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------C--CCcceecccCHHHHHHHHHHHH
Confidence 6899999999999998887643 3458999994 2 489998875 34445555554
No 43
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.63 E-value=2.2 Score=45.76 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=40.1
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~ 257 (623)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|.. +.+-+++..+.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL------------GHVGFLAEAEAEDLDEAVERVV 126 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec------------CCCceeccCCHHHHHHHHHHHH
Confidence 6899999999999988887643 23589999972 478998875 55556666664
No 44
>PLN02929 NADH kinase
Probab=82.53 E-value=1.5 Score=46.85 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=34.1
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee---cccCC--CCCC-CCCCCcChhhHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV---TLNGD--LKNQ-FVETNVGFDTICK 247 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK---TIDND--l~~~-~ie~S~GFdTA~~ 247 (623)
+.|.+|+||||||+-.|+... ..+++|+||-. +.|.- +.+. |-..++||-|++.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~ 123 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT 123 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCC
Confidence 568999999999999887653 23589999942 22221 0000 1013788888754
No 45
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.49 E-value=46 Score=33.32 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=61.3
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
+||||+..-..|-...++.|+-+.++....+..++ +..+. .+++
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~---------------------------------~~~~~---~~~~ 44 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT---------------------------------VVSAD---YDLN 44 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE---------------------------------EccCC---CCHH
Confidence 47888888788888889999988876421122211 11111 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
....+++.+...++|++++.+.+... ....+ +.+.+++ ++||.+-. +..+.. .++|+|.
T Consensus 45 ~~~~~i~~~~~~~~dgiIi~~~~~~~-~~~~i-~~~~~~~--ipvv~~~~----~~~~~~--~~V~~d~ 103 (271)
T cd06321 45 KQVSQIDNFIAAKVDLILLNAVDSKG-IAPAV-KRAQAAG--IVVVAVDV----AAEGAD--ATVTTDN 103 (271)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCChhH-hHHHH-HHHHHCC--CeEEEecC----CCCCcc--ceeeech
Confidence 44567788889999999998765431 12223 3444444 78887732 222222 4677764
No 46
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=82.11 E-value=2.9 Score=37.66 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=59.2
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
+||.||=|||- =|+..+.+ .+.....+||.+.+ .||+.-++.+. .+ +.
T Consensus 1 MkVLviGsGgR---EHAia~~l----~~s~~v~~v~~aPG-----------------------N~G~~~~~~~~-~~-~~ 48 (100)
T PF02844_consen 1 MKVLVIGSGGR---EHAIAWKL----SQSPSVEEVYVAPG-----------------------NPGTAELGKNV-PI-DI 48 (100)
T ss_dssp EEEEEEESSHH---HHHHHHHH----TTCTTEEEEEEEE-------------------------TTGGGTSEEE--S--T
T ss_pred CEEEEECCCHH---HHHHHHHH----hcCCCCCEEEEeCC-----------------------CHHHHhhceec-CC-CC
Confidence 57888877753 35554544 33445567887663 24544444332 22 45
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
.+.+.+++.+++++|| |+|||-..-+.. =|+++|++.| ++|+|=.
T Consensus 49 ~d~~~l~~~a~~~~id-lvvvGPE~pL~~--Gl~D~l~~~g--i~vfGP~ 93 (100)
T PF02844_consen 49 TDPEELADFAKENKID-LVVVGPEAPLVA--GLADALRAAG--IPVFGPS 93 (100)
T ss_dssp T-HHHHHHHHHHTTES-EEEESSHHHHHT--THHHHHHHTT---CEES--
T ss_pred CCHHHHHHHHHHcCCC-EEEECChHHHHH--HHHHHHHHCC--CcEECcC
Confidence 6788999999999999 788998887654 5788998887 6887643
No 47
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=81.83 E-value=3 Score=45.29 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc--------------CCCCeEEEeeecccC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA--------------KCPTKVVGVPVTLNG 229 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~--------------g~~i~VIGVPKTIDN 229 (623)
+.++.+++++.+++.+.|.+|-|||--++..|..++-..... +-.+++|.||-|--.
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 63 TLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 568899999999999999999999999999998888765422 112799999966543
No 48
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.88 E-value=2.7 Score=44.31 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=33.0
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~ 247 (623)
.+.|.+|++|||||+-.|..++ +.+++|+|||. -+.||-|...
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~------------G~lGFl~~~~ 98 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM------------GTLGFLTEVE 98 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC------------CCCCccccCC
Confidence 3789999999999998877643 23689999992 2568888655
No 49
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=78.60 E-value=5.4 Score=42.78 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh--cCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE--AKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~--~g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.... ..-.+++|.||-|
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 63 PIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 46788899999999999999999999988888777654332 1224899999966
No 50
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.23 E-value=4.5 Score=42.49 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=35.6
Q ss_pred CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH--HHHHHHHHHH
Q 006961 189 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNVC 257 (623)
Q Consensus 189 Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~--~~s~~I~ni~ 257 (623)
.|.+|+||||||+-.|+..+.. . ..++|+||.- . -++||-|..+ .+-+++.++.
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~---------~--G~lGFL~~~~~~~~~~~l~~i~ 95 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST---------K--DQLGFYCDFHIDDLDKMIQAIT 95 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec---------C--CCCeEcccCCHHHHHHHHHHHH
Confidence 6899999999999887765421 1 1478899862 1 3889987643 3444444443
No 51
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.64 E-value=10 Score=44.02 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=37.8
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH--HHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNV 256 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~--~~s~~I~ni 256 (623)
++|.+|+||||||+-.|+.... ...++|+||- . -++||-|..+ .+-+.+.++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin----------~--G~lGFL~~~~~~~~~~~l~~~ 401 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICIN----------M--GTVGFLTEFSKEEIFKAIDSI 401 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------C--CCCCcCcccCHHHHHHHHHHH
Confidence 5799999999999988877543 3368999995 2 4899998753 344444444
No 52
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.64 E-value=4.7 Score=42.95 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=39.7
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~ 257 (623)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|+. +.+.+++..+.
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~------------G~lGFl~~~~~~~~~~~l~~~~ 116 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR------------GRLGFLTDIRPDELEFKLAEVL 116 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC------------CcccccccCCHHHHHHHHHHHH
Confidence 6899999999999988865432 34689999973 368999874 45566666665
No 53
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=76.28 E-value=7.3 Score=42.55 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC--------------CCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK--------------CPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g--------------~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-.....+ -.+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 68 TIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 5678899999999999999999999999988877765433211 126899999553
No 54
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=76.06 E-value=6.9 Score=42.52 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-------------g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+... .-.+++|.||-|-
T Consensus 65 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 65 TLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 578899999999999999999999999998888777544211 1147899999654
No 55
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.55 E-value=3.1 Score=43.85 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=33.5
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~ 247 (623)
+.|.+++||||||+-.|+.... +.+++|+||- . -++||-|..+
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn----------~--G~lGFL~~~~ 84 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGIN----------R--GNLGFLTDID 84 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------C--CCCcccccCC
Confidence 6899999999999998876543 2358999995 1 4789988643
No 56
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=74.99 E-value=6.6 Score=42.26 Aligned_cols=53 Identities=30% Similarity=0.440 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 230 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.. ++++|.||-|.-++
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 467889999999999999999999998888888777532 58999999776444
No 57
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=74.73 E-value=30 Score=37.65 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~---~Id~LviIGGdgS~~~A~~Lae~~~~~-------------g~~i~VIGVPKT 226 (623)
+.+..+++++.+++. +.|.+|-|||--++..|..++-..... +-.+++|.||-|
T Consensus 63 t~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTT 132 (347)
T cd08184 63 KTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTL 132 (347)
T ss_pred CHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCC
Confidence 567889999999988 999999999999999988776433211 112568888854
No 58
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=74.48 E-value=42 Score=33.42 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=96.6
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHH
Q 006961 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 176 (623)
Q Consensus 97 IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~ 176 (623)
|||+.....-|--..+..|+-+.++.+ +.++.-+ +.+. .+.+.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~--------------------------------~~~~---~d~~~ 43 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKEL--GYEVEIV--------------------------------FDAQ---NDPEE 43 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHH--TCEEEEE--------------------------------EEST---TTHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEEEe--------------------------------CCCC---CCHHH
Confidence 688888888887777888888887754 2332211 0000 13455
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC-CCCCCCCCCcChhhHHHHHHHHHHH
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQFVETNVGFDTICKVNSQLISN 255 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND-l~~~~ie~S~GFdTA~~~~s~~I~n 255 (623)
....++++.+.++|++++..-+.+... .+.+.+.+.| |+||. +|+| .+......++|+|.. +....+...
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~--~~l~~~~~~g--Ipvv~----~d~~~~~~~~~~~~v~~d~~-~~G~~~a~~ 114 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLA--PFLEKAKAAG--IPVVT----VDSDEAPDSPRAAYVGTDNY-EAGKLAAEY 114 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTH--HHHHHHHHTT--SEEEE----ESSTHHTTSTSSEEEEE-HH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHH--HHHHHHhhcC--ceEEE----EeccccccccceeeeeccHH-HHHHHHHHH
Confidence 667888999999999998888875433 2334566666 68886 6777 444555588898743 333333333
Q ss_pred HHHHHhhccCceEEE-EecCCCccHH---HHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHH
Q 006961 256 VCTDALSAEKYYYFI-RLMGRRASHV---ALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQ 318 (623)
Q Consensus 256 i~~da~S~~k~~~fV-evMGR~aG~L---AL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~ 318 (623)
+........+ +.++ ...+-..... +...+|+.++++-+++|.. ..+.+..+..+.+.+.+.
T Consensus 115 l~~~~~~~~~-v~~~~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~l~ 179 (257)
T PF13407_consen 115 LAEKLGAKGK-VLILSGSPGNPNTQERLEGFRDALKEYPGVEIVDEYE-YTDWDPEDARQAIENLLQ 179 (257)
T ss_dssp HHHHHTTTEE-EEEEESSTTSHHHHHHHHHHHHHHHHCTTEEEEEEEE-ECTTSHHHHHHHHHHHHH
T ss_pred HHHHhccCce-EEeccCCCCchHHHHHHHHHHHHHhhcceeeeeeeee-ccCCCHHHHHHHHHHhhh
Confidence 3333222222 3323 2222111111 1233455567888888532 223555554555544444
No 59
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=74.18 E-value=9.9 Score=40.42 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=38.5
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~ 257 (623)
+.|.+|++|||||+-.|..... +.+++++||- . -++||-|.. +.+-+.+..+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~--G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------H--GRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------C--CCccccccCCHHHHHHHHHHHH
Confidence 6799999999999998876542 3468999996 2 478999863 34445555553
No 60
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=73.55 E-value=7.8 Score=41.84 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
.+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+ .+++|.||-|--
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~g 111 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAA 111 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccc
Confidence 5678999999999999999999999999998888887643 479999997763
No 61
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=73.05 E-value=8.1 Score=41.17 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 229 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDN 229 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+. + .+++|.||-|.-.
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~t 116 (332)
T cd07766 63 TFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAAT 116 (332)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCch
Confidence 5678899999999999999999999988888887776432 2 4799999955444
No 62
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=72.20 E-value=9.5 Score=42.18 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 210 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~ 210 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-.
T Consensus 91 ~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~ 128 (395)
T PRK15454 91 CITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALL 128 (395)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHH
Confidence 45778999999999999999999999999998776543
No 63
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=71.69 E-value=10 Score=41.35 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 209 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae 209 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-
T Consensus 66 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~ 102 (375)
T cd08179 66 SVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWI 102 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 5678899999999999999999999999999887763
No 64
>PLN02727 NAD kinase
Probab=71.63 E-value=6.8 Score=47.61 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=40.7
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~ 257 (623)
++|.+|+||||||+-.|+.+.. +..++|+||- . -++||-|-. +.+.+.+.++.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGIN----------l--GrLGFLTdi~~ee~~~~L~~Il 797 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFN----------L--GSLGFLTSHYFEDFRQDLRQVI 797 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEe----------C--CCccccccCCHHHHHHHHHHHH
Confidence 6899999999999998887753 3458999996 3 489998864 44556666665
No 65
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=71.60 E-value=10 Score=41.38 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-------------g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+... ...+++|.||-|
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 68 PEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 568899999999999999999999998888887776533110 124788999844
No 66
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=71.52 E-value=11 Score=41.33 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 210 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~ 210 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 56789999999999999999999999888888777654
No 67
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=71.47 E-value=20 Score=32.85 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=59.8
Q ss_pred CCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC-ChHHHHHHHHHHHHcCCCEEEEecCcchHHH
Q 006961 125 PKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR-TTEQVNAALTACKNLNLDGLVIIGGVTSNTD 203 (623)
Q Consensus 125 ~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~-t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~ 203 (623)
.+.++++-.+|..--+..= --+...++..|...|-+ ++.|+..-.. +++.+.+.++.|.+.++.||++--|..-..-
T Consensus 10 ~~~~lvaG~~gL~r~V~~v-~v~e~~d~~~~l~~gEl-vlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~i 87 (123)
T PF07905_consen 10 KDAKLVAGENGLDRPVRWV-HVMEAPDPSDWLRGGEL-VLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEI 87 (123)
T ss_pred CCCEEecCCccCCCcEEEE-EEeecCCHHHhCCCCeE-EEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccC
Confidence 3456665444433222221 12223367778766664 7777655433 4566889999999999999999555332233
Q ss_pred HHHHHHHHHhcCCCCeEEEeee
Q 006961 204 AAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 204 A~~Lae~~~~~g~~i~VIGVPK 225 (623)
-..+.+++.+.+ ++++.+|.
T Consensus 88 P~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 88 PEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred CHHHHHHHHHcC--CCEEEeCC
Confidence 445556665555 79999995
No 68
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.92 E-value=8.6 Score=41.52 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-. ..+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 45778899999999999999999999999988887743 247999999663
No 69
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=70.62 E-value=10 Score=41.09 Aligned_cols=53 Identities=23% Similarity=0.185 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 229 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDN 229 (623)
.+.+..+++++.+++.+.|.+|-|||--....|..+| +. + .+++|.||-|.-.
T Consensus 71 ~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~~--r--gip~I~IPTT~~t 123 (350)
T PRK00843 71 ATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-YR--L--GIPFISVPTAASH 123 (350)
T ss_pred CCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEeCCCccC
Confidence 4678899999999999999999999988888877776 32 3 4799999988643
No 70
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=70.59 E-value=12 Score=41.16 Aligned_cols=54 Identities=31% Similarity=0.326 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~-------------~g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-.... ....+++|.||-|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 56789999999999999999999999999998877642111 0124788999844
No 71
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=70.26 E-value=11 Score=41.19 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc---------------CCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA---------------KCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~---------------g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-..... ...+++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 71 TITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 567889999999999999999999998888887665422211 123788999965
No 72
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=69.35 E-value=1.2e+02 Score=32.64 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=93.4
Q ss_pred EEEecCCCCCch-HHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC-hH
Q 006961 98 GIVFCGRQSPGG-HNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT-TE 175 (623)
Q Consensus 98 gIv~sGG~aPG~-nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t-~e 175 (623)
-|++|||+.==. +.-+..+++.+++. +..+.+.+ |.++.+.+- .-+|++.++.+...|=...++.--..... .+
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~i-~~v~~iri--~Tr~~v~~p-~rit~ell~~L~~~g~~v~i~l~~~h~~el~~ 214 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAAI-DHVKIVRF--HTRVPVADP-ARVTPALIAALKTSGKTVYVALHANHARELTA 214 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHhC-CCccEEEE--eCCCcccCh-hhcCHHHHHHHHHcCCcEEEEecCCChhhcCH
Confidence 488999976544 35788888888753 22333333 344433222 34688888888877722234432222211 35
Q ss_pred HHHHHHHHHHHcCCCEEE---Ee-cCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHH
Q 006961 176 QVNAALTACKNLNLDGLV---II-GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 251 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~Lv---iI-GGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~ 251 (623)
...++++.|++.||.-++ ++ |=|++......|.+.+.+.|...-.+....-.. + +--|++..+.+.+
T Consensus 215 ~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~----g-----~~~f~~~~~~~~~ 285 (321)
T TIGR03822 215 EARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAP----G-----TAHFRVTIEEGQA 285 (321)
T ss_pred HHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCC----C-----cccccCcHHHHHH
Confidence 677888999999997643 44 555666677778887777775322233322111 1 2234456666666
Q ss_pred HHHHHHHHHhhccCceEEEEecCCC
Q 006961 252 LISNVCTDALSAEKYYYFIRLMGRR 276 (623)
Q Consensus 252 ~I~ni~~da~S~~k~~~fVevMGR~ 276 (623)
++..+..-....-.--+++++.|..
T Consensus 286 i~~~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 286 LVRALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHHHHhCCCCcceeEEEeCCCCC
Confidence 6666643322221222577877754
No 73
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=69.33 E-value=12 Score=40.67 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-----------------cCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-----------------AKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~-----------------~g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-.+.. ....+++|.||-|
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 62 DLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 45788999999999999999999999999888877654311 0124789999955
No 74
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=69.26 E-value=12 Score=40.83 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~-------------~g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.... ....+++|.||-|
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 70 TITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 56788999999999999999999999999988877642211 1124788888844
No 75
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=69.20 E-value=12 Score=41.01 Aligned_cols=38 Identities=26% Similarity=0.177 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 210 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~ 210 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-.
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~ 105 (380)
T cd08185 68 TTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM 105 (380)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 46788899999999999999999999999888777643
No 76
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=69.11 E-value=13 Score=41.06 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA 208 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~La 208 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 63 SLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 567889999999999999999999999999987776
No 77
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=69.08 E-value=13 Score=40.28 Aligned_cols=54 Identities=26% Similarity=0.277 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh------------cCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE------------AKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~------------~g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-.... ..-.+++|.||-|
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 68 SLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 56789999999999999999999999999988876642211 1124788999955
No 78
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=69.01 E-value=11 Score=40.55 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 231 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl 231 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++ +. + ++++|.||-|.-+|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a-~~--~--~~p~i~iPTT~~t~s 116 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAA-YK--L--GIPFISVPTAASHDG 116 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEecCcccCCc
Confidence 567888999999999999999999988888888777 33 2 479999998886554
No 79
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=68.56 E-value=13 Score=40.60 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHH----------h---cCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFA----------E---AKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~----------~---~g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+. . ....+++|.||-|
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 65 TDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 4678899999999999999999999999988877763211 0 1224789999966
No 80
>PRK15138 aldehyde reductase; Provisional
Probab=66.87 E-value=15 Score=40.57 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 209 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae 209 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 70 TYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 4678899999999999999999999999998887764
No 81
>PRK11914 diacylglycerol kinase; Reviewed
Probab=66.45 E-value=16 Score=38.53 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.++.++.+.+.+.|.+|++|||||...+.. .+. +.++++--+|.==-||+. .++|..+
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA-----r~lg~~~ 110 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA-----REFGIPT 110 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH-----HHcCCCC
Confidence 345555666666778899999999999887642 222 335778889988888886 5777654
No 82
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=66.21 E-value=15 Score=39.68 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+. |.+|.|||--.+..|..+|-.. .+ .+++|.||-|.
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--~~p~i~VPTT~ 117 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MR--GIRFIQVPTTL 117 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-cc--CCCEEEecCch
Confidence 56788999999999988 8999999998888887776432 23 47999999886
No 83
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=66.13 E-value=13 Score=40.14 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 172 RTTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
++.+..+++++.+++.++ |.+|-|||--.+..|..+|-.+. +| +++|.||-|.
T Consensus 66 ~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-rg--ip~i~VPTT~ 121 (345)
T cd08195 66 KSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYM-RG--IDFIQIPTTL 121 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHh-cC--CCeEEcchhH
Confidence 356889999999999999 99999999888888877765332 34 8999999876
No 84
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.72 E-value=11 Score=39.78 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=35.4
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH--HHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~--~~s~~I~ni~ 257 (623)
+.|.+|++|||||+-.|+... ..+|+||-. -++||-|... .+-+++..+.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 103 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM------------GGLGFLTEIEIDEVGSAIKKLI 103 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC------------CCCccCcccCHHHHHHHHHHHH
Confidence 789999999999987776532 258999852 3789988643 3444555554
No 85
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=65.71 E-value=13 Score=40.12 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++.+.+++.+.|.+|-|||--++..|..++-.+ .+++|.||-|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~-----~~p~i~VPTt~ 112 (345)
T cd08171 63 TYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL-----GKPVFTFPTIA 112 (345)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc-----CCCEEEecCcc
Confidence 567888999999999999999999999998888877543 47999999763
No 86
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=65.58 E-value=1.5e+02 Score=33.34 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=71.7
Q ss_pred EEEEecCCCCCchH-HHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC-CCCCh
Q 006961 97 VGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD-QIRTT 174 (623)
Q Consensus 97 IgIv~sGG~aPG~n-nVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~-k~~t~ 174 (623)
.-||+.=|.+.|-+ .-|++++..+. ..|+++.-|.. |-.||. -|.|.|. ..-..
T Consensus 126 P~vvilpGltg~S~~~YVr~lv~~a~--~~G~r~VVfN~---------------------RG~~g~-~LtTpr~f~ag~t 181 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYVRHLVHEAQ--RKGYRVVVFNH---------------------RGLGGS-KLTTPRLFTAGWT 181 (409)
T ss_pred cEEEEecCCCCCChhHHHHHHHHHHH--hCCcEEEEECC---------------------CCCCCC-ccCCCceeecCCH
Confidence 34444445555555 45689988765 45677776652 334664 6667663 34567
Q ss_pred HHHHHHHHHHHHcCCCE-EEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 006961 175 EQVNAALTACKNLNLDG-LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 229 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~-LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDN 229 (623)
++++.+++.+++.-=++ |+.+| .--+|+.|..|+.+.|-+.++++. .+|+|
T Consensus 182 ~Dl~~~v~~i~~~~P~a~l~avG---~S~Gg~iL~nYLGE~g~~~~l~~a-~~v~~ 233 (409)
T KOG1838|consen 182 EDLREVVNHIKKRYPQAPLFAVG---FSMGGNILTNYLGEEGDNTPLIAA-VAVCN 233 (409)
T ss_pred HHHHHHHHHHHHhCCCCceEEEE---ecchHHHHHHHhhhccCCCCceeE-EEEec
Confidence 89999999999887777 77766 334778899999998888877765 45544
No 87
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=64.92 E-value=32 Score=37.00 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 230 (623)
+.+..+++++.+++ +.|.+|-|||--.+..|..+| ++ + .+++|.||-|.-+|
T Consensus 66 ~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~--gip~I~VPTT~~~~ 117 (332)
T cd08549 66 DEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--V--GKPFISVPTAPSMD 117 (332)
T ss_pred CHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--c--CCCEEEeCCCcccC
Confidence 56788899999988 999999999988888887777 43 2 47999999988554
No 88
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=64.42 E-value=17 Score=39.81 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 210 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~ 210 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.
T Consensus 60 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~ 97 (374)
T cd08183 60 SVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAAL 97 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHH
Confidence 35778899999999999999999999999888777643
No 89
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=64.16 E-value=16 Score=38.47 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=43.8
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhh
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALS 262 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S 262 (623)
...+.++++||||++-.|+.... ...++|+||= . -++||-|-.+ .+.+..+..+...
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin----------~--G~lGFLt~~~--~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGIN----------L--GHLGFLTDFE--PDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEe----------C--CCcccccccC--HHHHHHHHHHHhc
Confidence 68899999999999998887653 2348999994 2 4899999887 6666666655555
No 90
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=64.04 E-value=98 Score=31.06 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
...+.++.+.+ ++|+++++..+.+... ..+ +.+.+.+ ++||. +|++..+.+-..+++.|
T Consensus 47 ~~~~~i~~~~~-~vdgiii~~~~~~~~~-~~i-~~~~~~~--ipvV~----~~~~~~~~~~~~~V~~d 105 (275)
T cd06307 47 ALAAALLRLGA-RSDGVALVAPDHPQVR-AAV-ARLAAAG--VPVVT----LVSDLPGSPRAGYVGID 105 (275)
T ss_pred HHHHHHHHHHh-cCCEEEEeCCCcHHHH-HHH-HHHHHCC--CcEEE----EeCCCCCCceeeEEccC
Confidence 34456677788 9999999987643221 223 3444444 67764 35555432211346655
No 91
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=63.83 E-value=15 Score=40.12 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-. . ++++|.||-|
T Consensus 69 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~--~~p~i~IPTt 117 (366)
T PRK09423 69 SDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY---L--GVPVVIVPTI 117 (366)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH---c--CCCEEEeCCc
Confidence 34678889999999999999999999888888777732 2 4799999976
No 92
>PRK13054 lipid kinase; Reviewed
Probab=63.50 E-value=16 Score=38.50 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 178 NAALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIGGdgS~~~A~-~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
...++.....+.|.+|++|||||...+. .|.+. ..+.++++--||.==-||+. .++|-.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa-----r~lgi~ 105 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA-----TAAGIP 105 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH-----HhcCCC
Confidence 3344444556789999999999988764 33221 11334677888988888886 455554
No 93
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=63.28 E-value=1.2e+02 Score=29.02 Aligned_cols=49 Identities=24% Similarity=0.197 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
+...++++.+...++|++++.+.+..... +.+.+.+.+ +++|.+=.+.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~ 93 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAP 93 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCC
Confidence 34556667777779999988877655432 444454444 78887654443
No 94
>PRK07360 FO synthase subunit 2; Reviewed
Probab=62.91 E-value=1.9e+02 Score=31.79 Aligned_cols=121 Identities=19% Similarity=0.177 Sum_probs=67.9
Q ss_pred CceEEEEEecCCCCCchH--HHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC-
Q 006961 93 PAIRVGIVFCGRQSPGGH--NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD- 169 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~n--nVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~- 169 (623)
...++.++ ||.-|-.. .-+..+++.+++..++..+.++-.----.+....-.++.+.+..++..|=..+.+++..
T Consensus 107 G~~~i~l~--~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~ 184 (371)
T PRK07360 107 GATEVCIQ--GGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEI 184 (371)
T ss_pred CCCEEEEc--cCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhh
Confidence 45677777 45555443 45667788777655666666541100000011111344556666666665444454431
Q ss_pred ----------C-CCChHHHHHHHHHHHHcCC--CEEEEecCcchHHHHHHHHHHHHhcC
Q 006961 170 ----------Q-IRTTEQVNAALTACKNLNL--DGLVIIGGVTSNTDAAYLAETFAEAK 215 (623)
Q Consensus 170 ----------k-~~t~e~~~~i~~~l~~~~I--d~LviIGGdgS~~~A~~Lae~~~~~g 215 (623)
+ ..+.+.+-++++.++++|+ ..=+++|=..|..........+++.+
T Consensus 185 l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~ 243 (371)
T PRK07360 185 LVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQ 243 (371)
T ss_pred ccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 1 1245667789999999998 55566665567776666666665543
No 95
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=62.86 E-value=16 Score=39.49 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++.. . .+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~---~--~~p~i~VPTta 111 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR---L--DKPIVIVPTIA 111 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH---c--CCCEEEeCCcc
Confidence 46788899999999999999999999888888887743 2 47999999763
No 96
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=62.58 E-value=20 Score=39.30 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc---------------CCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA---------------KCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~---------------g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-..... .-.+++|.||-|
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 72 TIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 457888999999999999999999999888887665322110 123788999955
No 97
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=62.53 E-value=16 Score=39.70 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+. |.+|.|||--++..|..+|-.+ .+ .+++|.||-|.
T Consensus 74 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--gip~i~IPTT~ 128 (358)
T PRK00002 74 SLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MR--GIRFIQVPTTL 128 (358)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cC--CCCEEEcCchh
Confidence 56788999999999987 9999999998888887776422 23 47999999986
No 98
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=61.73 E-value=19 Score=39.36 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHHcCC----CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 172 RTTEQVNAALTACKNLNL----DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~I----d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
++.+..+++.+.+.+.+. |.+|-|||--.+..|..+|-.+. +| ++.|.||-|.
T Consensus 68 ~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~-rg--~p~i~VPTT~ 124 (354)
T cd08199 68 KTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYR-RG--TPYVRIPTTL 124 (354)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhc-CC--CCEEEEcCcc
Confidence 356888999999999999 99999999888888777765332 34 7999999886
No 99
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.62 E-value=1.1e+02 Score=30.71 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=57.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
.||||+..-..|-...++.|+.+.++.. +..++- ..+. .+++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~---------------------------------~~~~---~~~~ 42 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAA--GYSLLI---------------------------------ANSL---NDPE 42 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc--CCEEEE---------------------------------EeCC---CChH
Confidence 3788888878888888999998887642 333321 0011 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
...++++.+...++|++++.+++... ..+.+.+++++ ++||.+=...+
T Consensus 43 ~~~~~i~~l~~~~vdgii~~~~~~~~---~~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 43 RELEILRSFEQRRMDGIIIAPGDERD---PELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCc---HHHHHHHHhCC--CCEEEEecccC
Confidence 45567788999999999999876432 12334455555 67776644443
No 100
>PRK13337 putative lipid kinase; Reviewed
Probab=61.54 E-value=14 Score=39.07 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 178 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+++++.+...+.|.||++|||||...+.. .+...+.++++--+|.===||+. .++|...
T Consensus 47 ~~~a~~~~~~~~d~vvv~GGDGTl~~vv~---gl~~~~~~~~lgiiP~GT~NdfA-----r~lgi~~ 105 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGGDGTLNEVVN---GIAEKENRPKLGIIPVGTTNDFA-----RALHVPR 105 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCHHHHHHH---HHhhCCCCCcEEEECCcCHhHHH-----HHcCCCC
Confidence 34444455667899999999999887653 22223445677778987788886 4556543
No 101
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=60.98 E-value=23 Score=38.60 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 210 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~ 210 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.
T Consensus 66 ~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~ 103 (370)
T cd08192 66 TEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALM 103 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 56789999999999999999999999888888777654
No 102
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=60.88 E-value=10 Score=43.19 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=94.1
Q ss_pred CEEEEEccChhhhhcCCeeecCHhHHhchhhc--CCcccccCcCCCCCChHHHHHHHHHHHHcCC---CEEEEecCcchH
Q 006961 127 STLLGFLGGSEGLFAQKTLEVTKEILSTYKNQ--GGYDMLGRTKDQIRTTEQVNAALTACKNLNL---DGLVIIGGVTSN 201 (623)
Q Consensus 127 ~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~--GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~I---d~LviIGGdgS~ 201 (623)
..|+-..++..+. .++.+.++++.|..+... .-..+.=..-..-++-+..+++++.+.++++ |.+|.|||--..
T Consensus 172 ~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~ 250 (488)
T PRK13951 172 HLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALT 250 (488)
T ss_pred eeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHH
Confidence 4555444444444 356667777766553321 0011111111223467889999999999999 999999998877
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHH
Q 006961 202 TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVA 281 (623)
Q Consensus 202 ~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LA 281 (623)
..|-..|..+. +| |+.|.||-|+-- .+|.|+|--|+++.- ..++-+
T Consensus 251 D~agf~A~~y~-RG--i~~i~vPTTlla-----~vDssiggK~~vn~~------------~~KNli-------------- 296 (488)
T PRK13951 251 DFTGFVASTFK-RG--VGLSFYPTTLLA-----QVDASVGGKNAIDFA------------GVKNVV-------------- 296 (488)
T ss_pred HHHHHHHHHHh-cC--CCeEecCccHHH-----HHhcCCCCCeeeeCC------------CCCcee--------------
Confidence 77777766443 45 899999999864 344888888887651 223311
Q ss_pred HHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHH
Q 006961 282 LECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA 319 (623)
Q Consensus 282 L~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~ 319 (623)
+.=..|..+++--.. -..++-.++.+.+++.|+-
T Consensus 297 ---G~f~~P~~viiD~~~-l~TLp~~~~~~G~aE~iK~ 330 (488)
T PRK13951 297 ---GTFRMPDYVIIDPTV-TLSMDEGRFEEGVVEAFKM 330 (488)
T ss_pred ---ecCCCCCEEEEchHH-hcCCCHHHHHhhHHHHHHH
Confidence 112257777764333 2224455666667776663
No 103
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=59.86 E-value=25 Score=38.17 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEecCcchHHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLN--LDGLVIIGGVTSNTDAAYLAET 210 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~--Id~LviIGGdgS~~~A~~Lae~ 210 (623)
+.+..+++.+.+++.+ .|.+|-|||--.+..|..++-.
T Consensus 63 t~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~ 102 (355)
T TIGR03405 63 DVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVG 102 (355)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 4577888999999888 9999999999988888766543
No 104
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=59.63 E-value=68 Score=34.10 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=60.5
Q ss_pred cCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC
Q 006961 90 TEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 90 ~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~ 169 (623)
.+.-+++|||||| -.+.|.+-+++.+- ..++..+++-|.-=. ||=
T Consensus 10 lP~~p~~I~vITs-~~gAa~~D~~~~~~----~r~~~~~~~~~p~~v---------------------QG~--------- 54 (319)
T PF02601_consen 10 LPKFPKRIAVITS-PTGAAIQDFLRTLK----RRNPIVEIILYPASV---------------------QGE--------- 54 (319)
T ss_pred CCCCCCEEEEEeC-CchHHHHHHHHHHH----HhCCCcEEEEEeccc---------------------ccc---------
Confidence 3456789999998 44555555555554 446666665544211 221
Q ss_pred CCCChHHHHHHHHHHHHcC----CCEEEEecCcchHHHHHHHHHHHHhc---CCCCeEE
Q 006961 170 QIRTTEQVNAALTACKNLN----LDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVV 221 (623)
Q Consensus 170 k~~t~e~~~~i~~~l~~~~----Id~LviIGGdgS~~~A~~Lae~~~~~---g~~i~VI 221 (623)
..++.+-++++.+.+.+ +|.+||+=|-||...-..+.++-..+ .++++||
T Consensus 55 --~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 55 --GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVI 111 (319)
T ss_pred --chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEE
Confidence 13456666777777665 99999999999998876665543322 4567775
No 105
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=59.05 E-value=35 Score=38.24 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHH-HHHHHHHHHhcCCCCeEEEe
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTD-AAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~-A~~Lae~~~~~g~~i~VIGV 223 (623)
.-+.+++.|++-++|++|..-.-|+-+. ++..+.++.+.| |+||.+
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~G--IPvV~i 370 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAG--IPVVHI 370 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcC--CCEEEE
Confidence 4467899999999999999988777554 566788888877 555554
No 106
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=58.98 E-value=1.9e+02 Score=28.66 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=66.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
+||++...-.-|=...++.|+-++++.. +.++. +..+. .+++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--GGDLR---------------------------------VYDAG---GDDA 42 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 4788877666677777777877766532 22221 11111 1233
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHH
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 255 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~n 255 (623)
.....++.+...++|++|+..++.... ...+ +.+.++| ++||.+ |++.....+ .+++.|-. +....+...
T Consensus 43 ~~~~~l~~~~~~~vdgii~~~~~~~~~-~~~i-~~~~~~~--ipvV~~----~~~~~~~~~-~~V~~d~~-~~g~~~~~~ 112 (273)
T cd06305 43 KQADQIDQAIAQKVDAIIIQHGRAEVL-KPWV-KRALDAG--IPVVAF----DVDSDNPKV-NNTTQDDY-SLARLSLDQ 112 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhh-HHHH-HHHHHcC--CCEEEe----cCCCCCCcc-ceeeechH-HHHHHHHHH
Confidence 444567777778999999998764322 2223 3344445 677765 444432221 35666532 233333333
Q ss_pred HHHHHhhccCceEEEE
Q 006961 256 VCTDALSAEKYYYFIR 271 (623)
Q Consensus 256 i~~da~S~~k~~~fVe 271 (623)
+......+.+ +.++-
T Consensus 113 l~~~~~g~~~-i~~i~ 127 (273)
T cd06305 113 LVKDLGGKGN-VGYVN 127 (273)
T ss_pred HHHHhCCCCC-EEEEE
Confidence 4332233433 55553
No 107
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=58.94 E-value=26 Score=38.50 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeec
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVT 226 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-------------g~~i~VIGVPKT 226 (623)
.++..++++.+++.+.|.+|-|||--.+..|..++-.+... +-.+++|.||-|
T Consensus 65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 65 RSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 45566778889999999999999999999888877543210 114788889844
No 108
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=58.94 E-value=23 Score=38.55 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHH
Q 006961 172 RTTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 248 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~ 248 (623)
++.+..+++.+.+.+.+. |.+|.|||--+...|..+|-.+ .+| ++.+.||.|.-- .++.++|--|+++.
T Consensus 57 k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~-~rg--i~~i~iPTTlla-----~vds~ig~k~~vn~ 128 (346)
T cd08196 57 KSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIY-MRG--VSWSFVPTTLLA-----QVDSCIGSKSSINV 128 (346)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHH-HcC--CCeEEecccHHH-----hhhccccccceecC
Confidence 356889999999999999 8999999988888777776533 345 699999987532 12256666665553
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHH
Q 006961 249 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQ 318 (623)
Q Consensus 249 ~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~ 318 (623)
.. .|. ..+-...|+.+++--++ -+.++-.++...+++.|+
T Consensus 129 ~~-------------~Kn----------------~ig~f~~P~~viiD~~~-l~tlp~~~~~~G~aEiiK 168 (346)
T cd08196 129 GP-------------YKN----------------LVGNFYPPREIYIDPPF-LSTLDEKEIYSGLGEALK 168 (346)
T ss_pred CC-------------CCc----------------ccccCCCCCEEEEchHH-hccCCHHHHHhhHHHHHH
Confidence 22 111 01112368888875433 233555666777777774
No 109
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=58.69 E-value=25 Score=38.91 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 210 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~ 210 (623)
+.+..+++++.+++.+.|.+|-+||--++..|..++=.
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~ 108 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALL 108 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHH
Confidence 46788999999999999999999999888887766543
No 110
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=58.36 E-value=55 Score=33.47 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=59.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
.|||++..-..|-...++.|+-+.++.. |..+. +..+. .+++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKEL--GAEVI---------------------------------VQNAN---GDPA 42 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 3778887667777777777887776532 23322 11111 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
...++++.+...++|++++.+.+.+... ..| +.+.+.| ++||.+ |.+........++++|-
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~l-~~l~~~~--ipvV~~----~~~~~~~~~~~~v~~d~ 103 (288)
T cd01538 43 KQISQIENMIAKGVDVLVIAPVDGEALA-SAV-EKAADAG--IPVIAY----DRLILNSNVDYYVSFDN 103 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhHH-HHH-HHHHHCC--CCEEEE----CCCCCCCCcceEEEeCh
Confidence 4556777788899999999886654211 222 3344444 788754 55544332223566553
No 111
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=57.94 E-value=26 Score=38.41 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-------------g~~i~VIGVPKT 226 (623)
+.+..+++++.++..+.|.+|-|||--.+..|..++-..... ...+++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 71 RLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 457788999999999999999999988888887665432110 124788989844
No 112
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=57.82 E-value=27 Score=38.85 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA 208 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~La 208 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 65 TDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467889999999999999999999999998887665
No 113
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=57.49 E-value=33 Score=37.73 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+.+..+++...+...+.|.++=|||--+...|..+|..+ ++++|.||-+=.+|=.
T Consensus 69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~-----~~pfIsvPT~AS~Da~ 123 (360)
T COG0371 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRL-----GLPFISVPTIASTDAI 123 (360)
T ss_pred CHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHc-----CCCEEEecCccccccc
Confidence 567888888888888999999999999999998887642 5899999988888765
No 114
>PRK06186 hypothetical protein; Validated
Probab=57.48 E-value=13 Score=38.35 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=44.7
Q ss_pred CCCEEEEecCcchH--HHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhcc
Q 006961 188 NLDGLVIIGGVTSN--TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE 264 (623)
Q Consensus 188 ~Id~LviIGGdgS~--~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~ 264 (623)
+.|+++|.||.|.- .+.-..++|+++++ +++.|| |.|+..|+=.++.-+-.+ .||.|..
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI---------------ClGmQ~avIe~arnv~g~-~dA~s~E 113 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT---------------CGGFQHALLEYARNVLGW-ADAAHAE 113 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee---------------chhhHHHHHHHHhhhcCC-cCCCcCC
Confidence 77999999999874 34556677887776 677765 999999887777766555 4888753
No 115
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=56.98 E-value=51 Score=37.59 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcc--cccCcCCCCCChHHHHHHHHHHHHcCCCEE
Q 006961 115 GLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD--MLGRTKDQIRTTEQVNAALTACKNLNLDGL 192 (623)
Q Consensus 115 gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~--~lGS~R~k~~t~e~~~~i~~~l~~~~Id~L 192 (623)
.+-+.+.....-.+++-|.|-..| +++-..+-++.+..+....|.. +.-+.+ ..+....++.+...+.|.+
T Consensus 100 ~~~~~~~~~~~~kr~lvIvNP~SG--kg~a~k~~~~~v~~~L~~~gi~~~v~~T~~-----~ghA~~la~~~~~~~~D~V 172 (481)
T PLN02958 100 KLRDYLDSLGRPKRLLVFVNPFGG--KKSASKIFFDVVKPLLEDADIQLTIQETKY-----QLHAKEVVRTMDLSKYDGI 172 (481)
T ss_pred HHHHHHhhccCCcEEEEEEcCCCC--CcchhHHHHHHHHHHHHHcCCeEEEEeccC-----ccHHHHHHHHhhhcCCCEE
Confidence 444444333334577778887666 3333333334566555555532 222221 2333445555556678999
Q ss_pred EEecCcchHHHHH-HHHHHH-HhcCCCCeEEEeeecccCCCCC
Q 006961 193 VIIGGVTSNTDAA-YLAETF-AEAKCPTKVVGVPVTLNGDLKN 233 (623)
Q Consensus 193 viIGGdgS~~~A~-~Lae~~-~~~g~~i~VIGVPKTIDNDl~~ 233 (623)
|++|||||...+. -|.+.- .+.+.++++--||.==-||+..
T Consensus 173 V~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 173 VCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred EEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhh
Confidence 9999999987643 343210 0013467888899988999873
No 116
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=56.96 E-value=24 Score=38.90 Aligned_cols=49 Identities=27% Similarity=0.389 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 175 EQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id---~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+..+++.+.+.+.+.| .+|.|||-=....|..+|-. ..+| ++.|.||-|
T Consensus 83 ~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT 134 (369)
T cd08198 83 DLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC
Confidence 6788899999999998 99999998777777766653 2344 899999988
No 117
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=56.77 E-value=30 Score=37.86 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------cCC------CCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------AKC------PTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~-------~g~------~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.... .+. .+++|.||-|-
T Consensus 70 ~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 70 RDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 45778888999999999999999999988888655432211 011 36788888554
No 118
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=56.17 E-value=1.4e+02 Score=29.48 Aligned_cols=83 Identities=19% Similarity=0.147 Sum_probs=52.3
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHH
Q 006961 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 176 (623)
Q Consensus 97 IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~ 176 (623)
||+|..+-..|....++.|+-+.++.. +.++.-+. +.. +.+.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~~---~~~~ 43 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAA--GYQLLLGN---------------------------------TGY---SPER 43 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHc--CCEEEEec---------------------------------CCC---Cchh
Confidence 788888878888888888888777632 33332111 100 1233
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
..++++.+...++||+++.+-+.+.. + + +.+.+. +++||.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~-~--~-~~~~~~--~ipvv~~ 84 (268)
T cd01575 44 EEELLRTLLSRRPAGLILTGLEHTER-T--R-QLLRAA--GIPVVEI 84 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHH-H--H-HHHHhc--CCCEEEE
Confidence 45677888889999999998775521 1 2 223333 4788877
No 119
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=56.13 E-value=23 Score=38.27 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
.+.+..+++++.+++ +.|.+|-|||--.+..|..++. + + .+++|.||-|
T Consensus 65 pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~-~--~--~~p~i~IPTT 113 (348)
T cd08175 65 ADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSY-K--T--GIPYISVPTA 113 (348)
T ss_pred CCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHH-h--c--CCCEEEecCc
Confidence 467888889888888 9999999999888888877773 2 2 4799999988
No 120
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=56.06 E-value=96 Score=31.26 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
+.....++.+...++|++++.+.+.... . .+. ++.++| ++||.+ |++...+....++|.|
T Consensus 44 ~~~~~~i~~~~~~~vdgiI~~~~~~~~~-~-~~~-~~~~~g--iPvV~~----~~~~~~~~~~~~V~~d 103 (268)
T cd06306 44 AKQIAQLEDCAAWGADAILLGAVSPDGL-N-EIL-QQVAAS--IPVIAL----VNDINSPDITAKVGVS 103 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCChhhH-H-HHH-HHHHCC--CCEEEe----ccCCCCcceeEEecCC
Confidence 3444678888899999999987654322 2 333 344444 677655 4444333322345544
No 121
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=55.87 E-value=12 Score=39.79 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
.+++.+++.|-+ .+|.++||||-.| .|..+|+|-+++.+.++-.|-=|.=||
T Consensus 197 ~~RQ~a~~~La~-~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PF02401_consen 197 QNRQEAARELAK-EVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETADELD 248 (281)
T ss_dssp HHHHHHHHHHHC-CSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGGG--
T ss_pred HHHHHHHHHHHh-hCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCccccC
Confidence 456666666654 7999999999999 677889999988875444443344343
No 122
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=55.42 E-value=26 Score=38.33 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id---~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+-+..+++.+.+++.++| .+|-|||--.+..|..+|-.+ .+ .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~r--gip~I~IPTTl 120 (355)
T cd08197 66 TLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FR--GIRLVHIPTTL 120 (355)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcc
Confidence 567889999999999999 999999988877776666432 23 37999999774
No 123
>PLN02834 3-dehydroquinate synthase
Probab=54.99 E-value=27 Score=39.29 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 172 RTTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id---~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
++.+.++++++.+.++++| .+|.|||--.+..|..+|-.+ .+| +++|.||-|.
T Consensus 144 ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl 199 (433)
T PLN02834 144 KDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV 199 (433)
T ss_pred CCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC
Confidence 4578889999999999998 999999988888887666433 234 7999999884
No 124
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=54.92 E-value=2.9e+02 Score=31.18 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=90.1
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
..+||.-. ||-=-+||.+.++..+.. +.-| .+|-|...|+.+ ||. +. .|+
T Consensus 15 ~~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY-------TG-mtP 64 (426)
T PRK15458 15 KTNGIYAV---CSAHPLVLEAAIRYALAN--DSPL--------------LIEATSNQVDQF---GGY-------TG-MTP 64 (426)
T ss_pred CCceEEEe---cCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc-------CC-CCH
Confidence 34566654 455568999988766532 2322 378888888887 885 22 356
Q ss_pred HHHHH-HHHHHHHcCCCE-EEEecCc-------------chHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCC
Q 006961 175 EQVNA-ALTACKNLNLDG-LVIIGGV-------------TSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETN 239 (623)
Q Consensus 175 e~~~~-i~~~l~~~~Id~-LviIGGd-------------gS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S 239 (623)
.+|.. +.+..++.+++. .+++||| ..|..|..|.+.+.+.|+ .-|++=.|++ ..++. ..
T Consensus 65 ~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF--~kIHLD~Sm~--cagdp--~p 138 (426)
T PRK15458 65 ADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGF--KKIHLDCSMS--CADDP--IP 138 (426)
T ss_pred HHHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC--ceEEecCCCC--CCCCC--CC
Confidence 66644 455677889998 9999997 467778888777777785 6777777777 44444 67
Q ss_pred cChhhHHHHHHHHHHHHHHHH
Q 006961 240 VGFDTICKVNSQLISNVCTDA 260 (623)
Q Consensus 240 ~GFdTA~~~~s~~I~ni~~da 260 (623)
+.=+|.++-.++++.-.-..+
T Consensus 139 L~d~~vA~Raa~L~~~aE~~a 159 (426)
T PRK15458 139 LTDEIVAERAARLAKIAEETC 159 (426)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 777999999999888554333
No 125
>PRK13055 putative lipid kinase; Reviewed
Probab=54.88 E-value=22 Score=38.21 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 179 AALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 179 ~i~~~l~~~~Id~LviIGGdgS~~~A~-~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
..++.+...+.|.||++|||||...+. .|.+ .+..+++--||.==-||+. .++|..+
T Consensus 50 ~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdfA-----r~Lgi~~ 107 (334)
T PRK13055 50 NEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDYA-----RALKIPR 107 (334)
T ss_pred HHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHHH-----HHcCCCC
Confidence 344444567789999999999988654 3332 2334566778987888886 4566543
No 126
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=54.85 E-value=20 Score=32.86 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=33.2
Q ss_pred CCEEEEecCcchHHHHHHHHHHHHhcCC--CCeEEEeeecccCCCCCCCCCCCcChhhHHHH
Q 006961 189 LDGLVIIGGVTSNTDAAYLAETFAEAKC--PTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 248 (623)
Q Consensus 189 Id~LviIGGdgS~~~A~~Lae~~~~~g~--~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~ 248 (623)
.+.+|++|||||...+.. .+.+.+. ++++.-+|.==-||+. .++|+.+-...
T Consensus 55 ~~~ivv~GGDGTl~~vv~---~l~~~~~~~~~~l~iiP~GT~N~~a-----r~lg~~~~~~~ 108 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVN---GLMGSDREDKPPLGIIPAGTGNDFA-----RSLGIPSDPEA 108 (130)
T ss_dssp -SEEEEEESHHHHHHHHH---HHCTSTSSS--EEEEEE-SSS-HHH-----HHTT--SSHHH
T ss_pred ccEEEEEcCccHHHHHHH---HHhhcCCCccceEEEecCCChhHHH-----HHcCCCCCcHH
Confidence 489999999999877532 3333333 4588999987788876 67787776665
No 127
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=53.98 E-value=15 Score=38.44 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=30.9
Q ss_pred HHHHcCCCEEEEecCcchHHHHHH-HHHHHHhcCCCCeEEE-eeecccCCCC
Q 006961 183 ACKNLNLDGLVIIGGVTSNTDAAY-LAETFAEAKCPTKVVG-VPVTLNGDLK 232 (623)
Q Consensus 183 ~l~~~~Id~LviIGGdgS~~~A~~-Lae~~~~~g~~i~VIG-VPKTIDNDl~ 232 (623)
.+.+.+.|.+|++|||||...+.. |.+ .. +.+.+| +|.==-||+.
T Consensus 52 ~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 52 EARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 344567999999999999887653 432 12 234566 8977777775
No 128
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=52.82 E-value=1.4e+02 Score=29.77 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=53.2
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
+||||+..-..|....++.|+-+.++.. +.++.-.. .... .+.+
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~~~-~~~~ 44 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKL--GVSVDIQA---------------------------------APSE-GDQQ 44 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHh--CCeEEEEc---------------------------------cCCC-CCHH
Confidence 5788887767777888888887776632 22221100 0000 1233
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
....+++.+...++|++++.+.+.+...+ ..+++.+++ ++||.+-..
T Consensus 45 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~--~~~~~~~~~--iPvV~~~~~ 91 (275)
T cd06320 45 GQLSIAENMINKGYKGLLFSPISDVNLVP--AVERAKKKG--IPVVNVNDK 91 (275)
T ss_pred HHHHHHHHHHHhCCCEEEECCCChHHhHH--HHHHHHHCC--CeEEEECCC
Confidence 44567888888999999987765442222 224455554 788866433
No 129
>PRK13057 putative lipid kinase; Reviewed
Probab=52.79 E-value=32 Score=35.99 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+..++++. ...+.|.+|++|||||...+.. .+... ++++-.+|.===||+. .++|...
T Consensus 37 ~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~---~l~~~--~~~lgiiP~GT~Ndfa-----r~Lg~~~ 96 (287)
T PRK13057 37 PDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAP---ALVET--GLPLGILPLGTANDLA-----RTLGIPL 96 (287)
T ss_pred HHHHHHHHHH-HHcCCCEEEEECchHHHHHHHH---HHhcC--CCcEEEECCCCccHHH-----HHcCCCC
Confidence 3344444444 3467899999999999887642 22222 4788889987788886 5666653
No 130
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.11 E-value=16 Score=39.14 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=38.6
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH---HHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN---SQLISNVC 257 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~---s~~I~ni~ 257 (623)
+.|.+|++|||||+-.|+.... +.+++|+||.. . -++||-|..... .++++++.
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~--G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------G--GHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------C--CcceEecCchhhcchHHHHHHHH
Confidence 6899999999999988776532 34689999974 1 388999975322 45555554
No 131
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=51.36 E-value=53 Score=32.87 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=68.0
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcC---------CeeecCHhHHhchhhcCCcccccCcC
Q 006961 98 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTK 168 (623)
Q Consensus 98 gIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~---------~~~eLt~~~v~~~~n~GG~~~lGS~R 168 (623)
++|++||+.|-.... ..+ ......+++.-+|..=+++. ++=-++++..+.+... |..+. +
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~--~~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~---~ 69 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKL--WKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSK-GVEII---H 69 (208)
T ss_pred CEEEECCcCCcchhH-----HHh--hccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhc-CCeEE---E
Confidence 367888888854443 111 23456789999999888764 3335566677767655 42333 2
Q ss_pred CCC-CChHHHHHHHHHHHHcCCCEEEEecCcch-----HHHHHHHHHH
Q 006961 169 DQI-RTTEQVNAALTACKNLNLDGLVIIGGVTS-----NTDAAYLAET 210 (623)
Q Consensus 169 ~k~-~t~e~~~~i~~~l~~~~Id~LviIGGdgS-----~~~A~~Lae~ 210 (623)
.+- ++.-++++|++.+.+++-+-++++|+-|. +.+...|..+
T Consensus 70 ~p~~KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~ 117 (208)
T cd07995 70 FPDEKDFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLLLKY 117 (208)
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHH
Confidence 222 45568999999999999999999999775 4444555544
No 132
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=50.37 E-value=2.4e+02 Score=28.70 Aligned_cols=138 Identities=19% Similarity=0.241 Sum_probs=70.7
Q ss_pred CCCCceeEecCccCCCCcccccCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEE-EEEccChhhhhc------
Q 006961 69 YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTL-LGFLGGSEGLFA------ 141 (623)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v-~Gf~~G~~GL~~------ 141 (623)
...|.+-|.+|.- ..-....|+||=+--..+=.-.+...+...+.+ .+..| -|+-.|.+....
T Consensus 27 ~~~P~~Lf~~Gn~--------~ll~~~~iaIvGsR~~s~~~~~~a~~l~~~l~~--~g~~IVSG~A~GiD~~ah~~al~~ 96 (220)
T TIGR00732 27 YDPPPVLFYKGDL--------PLLSQRKVAIVGTRRPTKYGERWTRKLAEELAK--NGVTIVSGLALGIDGIAHKAALKV 96 (220)
T ss_pred CCCCceEEEECCc--------ccccCCeEEEEcCCCCCHHHHHHHHHHHHHHHh--CCCEEEcCchhhHHHHHHHHHHHc
Confidence 3467778887752 111224666666555666666666666555542 22222 233334333211
Q ss_pred -CCee------------ecCHhHHhchhhcCCcccccCcCCCCCC---h---HHHHHHHHHHHHcCCCEEEEecC---cc
Q 006961 142 -QKTL------------EVTKEILSTYKNQGGYDMLGRTKDQIRT---T---EQVNAALTACKNLNLDGLVIIGG---VT 199 (623)
Q Consensus 142 -~~~~------------eLt~~~v~~~~n~GG~~~lGS~R~k~~t---~---e~~~~i~~~l~~~~Id~LviIGG---dg 199 (623)
+..+ .=+.+..+.+...||. ++. ...+.+ . -.+.+++..+ =+++|+++. .|
T Consensus 97 ~g~tIaVl~~gld~~yp~~n~~l~~~i~~~ggl-liS--e~p~~~~~~~~~f~~RNriia~l----s~~vivve~~~~sG 169 (220)
T TIGR00732 97 NGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGL-LLS--EYPPDTKPIKYNFPKRNRIISGL----SRAVLVVEAPLKSG 169 (220)
T ss_pred CCCEEEEECCCCccCCchhhHHHHHHHHHcCCE-EEE--ecCCCCCCCcccHHHHHHHHHHh----cCEEEEEECCCCCc
Confidence 1111 1123455566667874 552 222211 1 2344443333 377888887 46
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 006961 200 SNTDAAYLAETFAEAKCPTKVVGVPVTLNG 229 (623)
Q Consensus 200 S~~~A~~Lae~~~~~g~~i~VIGVPKTIDN 229 (623)
|+.+|. ++.+.| -+|..+|..|++
T Consensus 170 tl~ta~----~A~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 170 ALITAR----YALEQG--REVFAYPGDLNS 193 (220)
T ss_pred hHHHHH----HHHHhC--CcEEEEcCCCCC
Confidence 665554 333344 589999988875
No 133
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=50.02 E-value=43 Score=36.35 Aligned_cols=53 Identities=28% Similarity=0.386 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHcC---CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 172 RTTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~---Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
++.+..+++.+.+++++ .|.+|.|||--.+..|..+|-.+ .++ +++|.||-|.
T Consensus 64 k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl 119 (344)
T cd08169 64 KTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL 119 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc
Confidence 35678889999999877 89999999988888887776543 234 7999999884
No 134
>PRK13059 putative lipid kinase; Reviewed
Probab=49.87 E-value=31 Score=36.32 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=37.1
Q ss_pred HcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 186 NLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 186 ~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.|.+|++|||||...+. +.+.+.+.++++--||.==-||+. .++|...
T Consensus 54 ~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA-----r~lgi~~ 104 (295)
T PRK13059 54 DESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA-----KFLGMPT 104 (295)
T ss_pred hcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH-----HHhCCCC
Confidence 46789999999999987754 233334556788889987788876 5666544
No 135
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=49.43 E-value=1.2e+02 Score=34.35 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=69.7
Q ss_pred CCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 91 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
+.-+++||||||= --+||+-+...++...|..+|+-+.-=. +|=
T Consensus 132 P~~p~~IGVITS~-----tgAairDIl~~~~rR~P~~~viv~pt~V---------------------QG~---------- 175 (440)
T COG1570 132 PFFPKKIGVITSP-----TGAALRDILHTLSRRFPSVEVIVYPTLV---------------------QGE---------- 175 (440)
T ss_pred CCCCCeEEEEcCC-----chHHHHHHHHHHHhhCCCCeEEEEeccc---------------------cCC----------
Confidence 3457899999972 2378999999998888888887654211 221
Q ss_pred CCChHHHHHHHHHHHHcC-CCEEEEecCcchHHHHHHHHHHHHhc---CCCCeEEE
Q 006961 171 IRTTEQVNAALTACKNLN-LDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVVG 222 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~-Id~LviIGGdgS~~~A~~Lae~~~~~---g~~i~VIG 222 (623)
.-.+++-++++.+.+.+ +|.|||.=|-||...-..+.|+...+ .++|+||.
T Consensus 176 -~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 176 -GAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred -CcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 12456667778888887 99999999999999988888765433 55788873
No 136
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=48.52 E-value=37 Score=37.61 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 175 EQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id---~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+..+++.+.+++.+.| .+|-|||--+...|..+|-. ..+| ++.|.||-|
T Consensus 95 ~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT 146 (389)
T PRK06203 95 ALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC
Confidence 6688999999999998 99999998887777666642 2234 799999999
No 137
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.61 E-value=90 Score=30.84 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=37.8
Q ss_pred HHHHHcCCCEEEEecCcchHHHHH----------------HHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 182 TACKNLNLDGLVIIGGVTSNTDAA----------------YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 182 ~~l~~~~Id~LviIGGdgS~~~A~----------------~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
...+...+|+|++-||.|..++-. .|++.|.+.|..+-.++|--++=--+.+..+..|+|-|
T Consensus 79 ~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~~TIGnD 156 (217)
T COG3155 79 AQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLRLTIGND 156 (217)
T ss_pred hhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCceeEEecCC
Confidence 345667899999999999876533 34555556666666666644443334333344455543
No 138
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=47.38 E-value=41 Score=35.32 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHH-HHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 179 AALTACKNLNLDGLVIIGGVTSNTDAA-YLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 179 ~i~~~l~~~~Id~LviIGGdgS~~~A~-~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
..++.+.+.+.|.+|++|||||...+. -|.+. ..+..+++.-+|.==-||+.
T Consensus 43 ~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 43 RYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred HHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 344444566789999999999988755 33321 11234567789988889986
No 139
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=47.04 E-value=73 Score=33.16 Aligned_cols=92 Identities=16% Similarity=0.274 Sum_probs=62.7
Q ss_pred CEEEEEccChhhhhcCCeeecCHhHHhchhhcCCccccc--CcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHH--
Q 006961 127 STLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNT-- 202 (623)
Q Consensus 127 ~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lG--S~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~-- 202 (623)
-.-+-+-+|..| ....-|......+++.+|...+- ++|+. +...++..+..+..+||+.+++++||-...
T Consensus 29 ~d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~ 102 (274)
T cd00537 29 PDFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDR--NRIELQSILLGAHALGIRNILALRGDPPKGGD 102 (274)
T ss_pred CCEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCC--CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCC
Confidence 445556666665 22334566777788888765443 24443 467899999999999999999999886543
Q ss_pred ----------HHHHHHHHHHhc---CCCCeEEEee
Q 006961 203 ----------DAAYLAETFAEA---KCPTKVVGVP 224 (623)
Q Consensus 203 ----------~A~~Lae~~~~~---g~~i~VIGVP 224 (623)
.|..|-+..++. +..+.|.+-|
T Consensus 103 ~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 103 QPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 478888887764 3445555555
No 140
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.76 E-value=2.1e+02 Score=26.71 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=43.6
Q ss_pred EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEE
Q 006961 191 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFI 270 (623)
Q Consensus 191 ~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fV 270 (623)
.+++|=+|..-..-..|++- .+.+ .+++.|=|+-|++++. | ...++.++..+.-+.++ .++
T Consensus 2 t~vliR~Ds~~Kil~ALaDl-eRya-giki~gkPrii~p~~a--D-----------~~~~~ilGe~R~k~~~a----a~a 62 (125)
T COG1844 2 TIVLIRADSYDKILTALADL-ERYA-GIKIRGKPRIIPPELA--D-----------EILSSILGEVRKKCKVA----AVA 62 (125)
T ss_pred eEEEEecCcHHHHHHHHHHH-HHhc-CceeecCCcccChhhH--H-----------HHHHHHHHHHhcccchh----hee
Confidence 47888888887777778774 3333 5899999999999984 2 44556666664333332 355
Q ss_pred EecC
Q 006961 271 RLMG 274 (623)
Q Consensus 271 evMG 274 (623)
||-+
T Consensus 63 ~v~~ 66 (125)
T COG1844 63 EVEE 66 (125)
T ss_pred eecC
Confidence 6543
No 141
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=46.32 E-value=1.5e+02 Score=33.36 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=61.5
Q ss_pred CCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 91 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
+.-+.+||||||- .+.+ +.-+...+...+|..+++-|.- .-||-
T Consensus 126 P~~p~~i~vits~-~~aa----~~D~~~~~~~r~p~~~~~~~~~---------------------~vQG~---------- 169 (432)
T TIGR00237 126 PHFPKRVGVITSQ-TGAA----LADILHILKRRDPSLKVVIYPT---------------------LVQGE---------- 169 (432)
T ss_pred CCCCCEEEEEeCC-ccHH----HHHHHHHHHhhCCCceEEEecc---------------------cccCc----------
Confidence 3457899999974 3344 4444444455566666653321 11222
Q ss_pred CCChHHHHHHHHHHHHc-CCCEEEEecCcchHHHHHHHHHHHHhc---CCCCeEE-EeeecccC
Q 006961 171 IRTTEQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVV-GVPVTLNG 229 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~-~Id~LviIGGdgS~~~A~~Lae~~~~~---g~~i~VI-GVPKTIDN 229 (623)
.....+-++++.+... ++|.+||+=|-||...-..+.++-..+ .++++|| ||=--+|.
T Consensus 170 -~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ 232 (432)
T TIGR00237 170 -GAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDF 232 (432)
T ss_pred -cHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCc
Confidence 1234555666666654 489999999999999877776654332 6678886 44444443
No 142
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=45.62 E-value=89 Score=35.19 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHH-HHHHHHHHHhcCCCCeEEEe
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTD-AAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~-A~~Lae~~~~~g~~i~VIGV 223 (623)
+.-..+++.|++-++|++|....-|+-+. ++..+.++.+.| |+||.+
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~G--iPvv~~ 370 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAG--IPVVHM 370 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcC--CCEEEE
Confidence 44567899999999999999988887554 566788888877 555554
No 143
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.39 E-value=1.2e+02 Score=30.04 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
+...+.++.+...++|++++.+.+.+... .+ +.+.+.| ++||.+ |++.....+ .++|+|
T Consensus 42 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~--~~-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 100 (268)
T cd06289 42 ERQEQLLSTMLEHGVAGIILCPAAGTSPD--LL-KRLAESG--IPVVLV----AREVAGAPF-DYVGPD 100 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCccHH--HH-HHHHhcC--CCEEEE----eccCCCCCC-CEEeec
Confidence 34456778888999999999987654322 22 3344444 688765 444332221 356665
No 144
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=44.00 E-value=4.4e+02 Score=28.28 Aligned_cols=107 Identities=13% Similarity=-0.001 Sum_probs=64.2
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
..+|+++......|=...+..|+-+.++.+ +.++. + .+.+ .. +
T Consensus 23 ~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~--G~~v~-~-------------------------------~~~~--~~-d 65 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTSGGNGAKEAGKEL--GVDVT-Y-------------------------------DGPT--EP-S 65 (336)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHHh--CCEEE-E-------------------------------ECCC--CC-C
Confidence 458999999888999999999998877632 22222 0 0111 11 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 245 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA 245 (623)
.+.....++.+...++|++++..-|... -...| +.+.+.| |+||. +|.|+..+.....+|.++.
T Consensus 66 ~~~q~~~i~~li~~~vdgIiv~~~d~~a-l~~~l-~~a~~~g--IpVV~----~d~~~~~~~~~~~V~~~~~ 129 (336)
T PRK15408 66 VSGQVQLINNFVNQGYNAIIVSAVSPDG-LCPAL-KRAMQRG--VKVLT----WDSDTKPECRSYYINQGTP 129 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHH-HHHHHCC--CeEEE----eCCCCCCccceEEEecCCH
Confidence 2333467888999999999998655332 22233 2344455 77775 6666643332244565443
No 145
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=43.79 E-value=5.3e+02 Score=29.18 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=91.6
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
++||.-. ||-=-+||.+.++..+.. +.-| .++-|...|+.+ ||. +. .|+.
T Consensus 12 ~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY-------TG-mtP~ 61 (420)
T TIGR02810 12 PRGIYSV---CSAHPLVLEAAIRRARAS--GTPV--------------LIEATSNQVNQF---GGY-------TG-MTPA 61 (420)
T ss_pred CCeEEEE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc-------CC-CCHH
Confidence 4566654 455568999988776532 2322 378888888887 885 22 3566
Q ss_pred HHHH-HHHHHHHcCCCE-EEEecCcc-------------hHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCc
Q 006961 176 QVNA-ALTACKNLNLDG-LVIIGGVT-------------SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV 240 (623)
Q Consensus 176 ~~~~-i~~~l~~~~Id~-LviIGGdg-------------S~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~ 240 (623)
+|.. +.+..++.+++. .+++|||- .|..|..|.+.+.+.|+ .-|++=.|++ .. +...-+
T Consensus 62 dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF--~kIHLD~Sm~--ca--~d~~~L 135 (420)
T TIGR02810 62 DFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGF--TKIHLDASMG--CA--GDPAPL 135 (420)
T ss_pred HHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC--ceEEecCCCC--cc--CCCccC
Confidence 6544 456677889998 99999983 56667777777777774 7778777777 11 112567
Q ss_pred ChhhHHHHHHHHHHHHHHHHh---hccCceEEE
Q 006961 241 GFDTICKVNSQLISNVCTDAL---SAEKYYYFI 270 (623)
Q Consensus 241 GFdTA~~~~s~~I~ni~~da~---S~~k~~~fV 270 (623)
.=+|.++-.++++.-.-..+. ....-+|+|
T Consensus 136 ~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 136 DDATVAERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 788999999998885544433 222334566
No 146
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=43.77 E-value=1.1e+02 Score=28.62 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=48.0
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH-HHHHHHHHHHHHHHhhccCceEEEEecC
Q 006961 196 GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC-KVNSQLISNVCTDALSAEKYYYFIRLMG 274 (623)
Q Consensus 196 GGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~-~~~s~~I~ni~~da~S~~k~~~fVevMG 274 (623)
||.|-=+.|..||..+.++|.++-+| |-|.....++.-+|-+... ..+.+.+ ..-|.||.+-+
T Consensus 9 gG~GKtt~a~~la~~l~~~g~~vllv------D~D~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~viiD~p~ 72 (179)
T cd02036 9 GGVGKTTTTANLGTALAQLGYKVVLI------DADLGLRNLDLILGLENRVVYTLHDVL----------AGDYILIDSPA 72 (179)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEE------eCCCCCCCchhhccccccCCcchhhcc----------cCCEEEEECCC
Confidence 89999999999999999888644443 6676433332333332110 0111111 11467999977
Q ss_pred CCccHHHHHhhhhcCCcEEEECCc
Q 006961 275 RRASHVALECTLQSHPNMVILGEE 298 (623)
Q Consensus 275 R~aG~LAL~~aLat~pniilIpEe 298 (623)
.. +..+. .++ ..+|.+++|=+
T Consensus 73 ~~-~~~~~-~~l-~~ad~viiv~~ 93 (179)
T cd02036 73 GI-ERGFI-TAI-APADEALLVTT 93 (179)
T ss_pred CC-cHHHH-HHH-HhCCcEEEEeC
Confidence 54 33333 334 36788887643
No 147
>PRK05670 anthranilate synthase component II; Provisional
Probab=43.39 E-value=39 Score=33.14 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=33.2
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 184 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 184 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
+++++.|+||+-||.++-..+....+.+++-..+++|.|| |+|+.-.+...
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI---------------ClG~Qlla~al 89 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV---------------CLGHQAIGEAF 89 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE---------------CHHHHHHHHHh
Confidence 3556789999999999976654433333222224677765 99988666554
No 148
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=43.03 E-value=57 Score=39.87 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 209 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae 209 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-
T Consensus 524 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia~ 560 (862)
T PRK13805 524 TLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIMWL 560 (862)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 4678999999999999999999999999988877763
No 149
>PRK00861 putative lipid kinase; Reviewed
Probab=42.94 E-value=39 Score=35.53 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhH
Q 006961 178 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 245 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA 245 (623)
.+.++.....+.|.+|++|||||...+.. .+... ++++--+|.===||+. .++|...-
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~~--~~~lgviP~GTgNdfA-----r~lgi~~~ 104 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGDGTLSAVAG---ALIGT--DIPLGIIPRGTANAFA-----AALGIPDT 104 (300)
T ss_pred HHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhcC--CCcEEEEcCCchhHHH-----HHcCCCCC
Confidence 34444455678899999999999877542 22222 4677778877777775 57777653
No 150
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=42.80 E-value=2e+02 Score=29.43 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=47.6
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCC---CC-------CcChhhHHHHHHHHHHHHHHHHhhccC
Q 006961 196 GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFV---ET-------NVGFDTICKVNSQLISNVCTDALSAEK 265 (623)
Q Consensus 196 GGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~i---e~-------S~GFdTA~~~~s~~I~ni~~da~S~~k 265 (623)
||-|-=|.|..||-++.++|.++-| ||-|-.++-. +. ...++.....-...+......+.....
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~Vll------iD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y 84 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVAL------FEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGF 84 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEE------EeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCC
Confidence 7888888888888888887754333 4556544310 00 000000000000112222222222222
Q ss_pred ceEEEEecCCCccHHHHHhhhhcCCcEEEECCcc
Q 006961 266 YYYFIRLMGRRASHVALECTLQSHPNMVILGEEV 299 (623)
Q Consensus 266 ~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~ 299 (623)
-|.||-+-|.. |.++..+.. .+|+++||=.+
T Consensus 85 D~iiID~pp~~-~~~~~~al~--~aD~vliP~~p 115 (231)
T PRK13849 85 DYALADTHGGS-SELNNTIIA--SSNLLLIPTML 115 (231)
T ss_pred CEEEEeCCCCc-cHHHHHHHH--HCCEEEEeccC
Confidence 35677777754 566654333 46999999644
No 151
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=42.39 E-value=2.1e+02 Score=30.60 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccC
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 229 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDN 229 (623)
...++...++.+.+.+|.-||-.+|.++ .||-+++..|++.. |.+|.+++.
T Consensus 52 ~~~~l~~a~~~g~~~vvt~g~s~gN~g~-alA~~a~~~G~~~~-i~vp~~~~~ 102 (331)
T PRK03910 52 LEFLLADALAQGADTLITAGAIQSNHAR-QTAAAAAKLGLKCV-LLLENPVPT 102 (331)
T ss_pred HHHHHHHHHHcCCCEEEEcCcchhHHHH-HHHHHHHHhCCcEE-EEEcCCCCc
Confidence 3444566667788889877766666664 47777788887544 448888774
No 152
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=42.24 E-value=1e+02 Score=31.32 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=58.9
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhh--------hcCCeeecCH--hHHhchhhcCCcccc
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL--------FAQKTLEVTK--EILSTYKNQGGYDML 164 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL--------~~~~~~eLt~--~~v~~~~n~GG~~~l 164 (623)
+||||+-.-|.+. .-+.+.+. ..|++|.+|..-..=+ ++.+..+++. +++. |+|.+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~--~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~------g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEAL--KRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLA------GHDAV 66 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHH--hCCCeeEEEEeChHhccccccceeecccccChhhhHhhhc------CCceE
Confidence 5899998777653 33444443 4689999988665433 3455666666 4444 33333
Q ss_pred cCcCCCC--CC----hHHHHHHHHHHHHcCCCEEEEecCcchHHH
Q 006961 165 GRTKDQI--RT----TEQVNAALTACKNLNLDGLVIIGGVTSNTD 203 (623)
Q Consensus 165 GS~R~k~--~t----~e~~~~i~~~l~~~~Id~LviIGGdgS~~~ 203 (623)
=+.-... .+ .+..+..++.++.-+..-|+|+||-||+.-
T Consensus 67 IsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 67 ISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred EEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 2222111 11 123556677888889999999999999643
No 153
>PF06995 Phage_P2_GpU: Phage P2 GpU; InterPro: IPR009734 This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein (O64315 from SWISSPROT) which is thought to be involved in tail assembly [].
Probab=41.84 E-value=18 Score=33.15 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=44.4
Q ss_pred CCChHHHHHH-HHhhhccccCcccCCCcccccCCCCCCCcceeEecccc--hhhhHHHHHHHHH
Q 006961 522 MRGKAYELLR-QNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRD--YMGRIKELQKYLD 582 (623)
Q Consensus 522 l~g~~f~~~~-~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~~~~~--y~~~~~~~~~~~~ 582 (623)
++...|+.++ +..-+|+..+..-..=..||.||..+..+++..+-... -..+++.|+++++
T Consensus 7 ~~~~~f~~l~r~~~~rwa~h~~ig~~p~~Q~~G~~~~~itl~g~l~~~~~~~~~~l~~Lr~~~~ 70 (121)
T PF06995_consen 7 VSTLTFQELQRSSSARWAEHERIGGKPALQFTGPGLDTITLSGVLFPEFGGGRKELDKLRAMAE 70 (121)
T ss_pred ecccChHHheeeeccccccceeccCCCcceecCCCCceEEEEEEEehHHCCCHHHHHHHHHHHH
Confidence 4667787776 56678999999999889999999998888877775332 3445555555444
No 154
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=41.77 E-value=79 Score=29.34 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=58.4
Q ss_pred CCEEEEEccChhhhhcC-C---------eeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEe
Q 006961 126 KSTLLGFLGGSEGLFAQ-K---------TLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 195 (623)
Q Consensus 126 ~~~v~Gf~~G~~GL~~~-~---------~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviI 195 (623)
..-+++.-+|..=+.+. . +=-++++..+.|.+.|- .++-.. -++..++++|++.+.+++.+-++++
T Consensus 16 ~~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~-~~~~~p---~kD~TD~e~Al~~~~~~~~~~i~v~ 91 (123)
T PF04263_consen 16 ADFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGV-EIIHFP---EKDYTDLEKALEYAIEQGPDEIIVL 91 (123)
T ss_dssp TSEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTT-EEEEE----STTS-HHHHHHHHHHHTTTSEEEEE
T ss_pred CCEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhcc-ceeccc---ccccCHHHHHHHHHHHCCCCEEEEE
Confidence 45677888887777665 3 33566777777888855 355333 2355689999999999999999999
Q ss_pred cCcc-----hHHHHHHHHHHHHhcCCCC
Q 006961 196 GGVT-----SNTDAAYLAETFAEAKCPT 218 (623)
Q Consensus 196 GGdg-----S~~~A~~Lae~~~~~g~~i 218 (623)
|+-| ++.+...|.++. +++.++
T Consensus 92 Ga~GgR~DH~lanl~~l~~~~-~~~~~i 118 (123)
T PF04263_consen 92 GALGGRFDHTLANLNLLYKYK-KRGIKI 118 (123)
T ss_dssp S-SSSSHHHHHHHHHHHHHHH-TTTSEE
T ss_pred ecCCCcHHHHHHHHHHHHHHH-HcCCeE
Confidence 9977 455566665553 445433
No 155
>PRK10586 putative oxidoreductase; Provisional
Probab=41.73 E-value=55 Score=35.86 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF 235 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ 235 (623)
+.+..+++.+..+ .+.|.+|-|||--++..|..++.. ..+++|.||-|--+|-..+.
T Consensus 72 ~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~ 128 (362)
T PRK10586 72 SESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred CHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccC
Confidence 3566667766665 589999999999999999888753 25799999988877765443
No 156
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=41.60 E-value=2.2e+02 Score=27.30 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 231 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl 231 (623)
++++++++++.+.+. +.++++|--+|...|..++..+...| ..+..++-....++
T Consensus 16 ~~~~~~~~~~~l~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g--~~~~~~~~~~~~~~ 70 (179)
T TIGR03127 16 DEEELDKLADKIIKA--KRIFVAGAGRSGLVGKAFAMRLMHLG--FNVYVVGETTTPSI 70 (179)
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHHhCC--CeEEEeCCcccCCC
Confidence 577899999998764 57888887788777777777666555 45555544443333
No 157
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=41.07 E-value=1.6e+02 Score=29.11 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=61.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
.||||+..-..|-.+.++.|+.+.+++. +..+.-+. +. .+++
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~--------------------------------~~----~~~~ 42 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA--GYSTIIGN--------------------------------SD----ENPE 42 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc--CCEEEEEe--------------------------------CC----CCHH
Confidence 3788887777788888888888877632 23332111 00 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.....++.+...++|++++.+.+.+.. . .+.+.+++ ++||. +|++.....+ .+++.|-
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~~~~---~-~~~l~~~~--ipvV~----~~~~~~~~~~-~~v~~d~ 100 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSAE---Q-LEDLLKRG--IPVVF----VDREITGSPI-PFVTSDP 100 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCChH---H-HHHHHhCC--CCEEE----EecccCCCCC-CEEEECc
Confidence 455678889999999999998765432 2 24445555 67774 4555543221 4566664
No 158
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=40.89 E-value=3.2e+02 Score=29.54 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=88.8
Q ss_pred EEEEecCCCCCchHH--HHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcC-CC-CC
Q 006961 97 VGIVFCGRQSPGGHN--VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK-DQ-IR 172 (623)
Q Consensus 97 IgIv~sGG~aPG~nn--VI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R-~k-~~ 172 (623)
--|+++||+ |=+.. .+..+++.+++.. .+.+++-|...... .-..+|++.++.++..|= .++..+. .. -+
T Consensus 161 ~eV~lsGGD-PLl~~d~~L~~ll~~L~~i~---~~~~IRi~tr~~~~-~P~rit~el~~~L~~~~~-~~~~vsh~nh~~E 234 (331)
T TIGR00238 161 IEILISGGD-PLMAKDHELEWLLKRLEEIP---HLVRLRIGTRLPVV-IPQRITDELCELLASFEL-QLMLVTHINHCNE 234 (331)
T ss_pred CEEEEECCc-cccCCHHHHHHHHHHHHhcC---CccEEEeecCCCcc-CchhcCHHHHHHHHhcCC-cEEEEccCCChHh
Confidence 368999998 55443 4778887776432 23333333332111 113367787777777653 2222221 11 12
Q ss_pred ChHHHHHHHHHHHHcCCC----EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHH
Q 006961 173 TTEQVNAALTACKNLNLD----GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 248 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id----~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~ 248 (623)
..+...++++.|++.|+. ..+.=|=+|+......|.+.+.+.|+. |=.+..=.+ +.-+=-|.+-.+.
T Consensus 235 i~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~------pyyl~~~~~---~~g~~~f~~~~~~ 305 (331)
T TIGR00238 235 ITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII------PYYLHYLDK---VQGAKHFLVPDAE 305 (331)
T ss_pred CCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee------cCeecCcCC---CCCcccccCCHHH
Confidence 235677788889988775 345667788888888888877665531 222221111 0112336666777
Q ss_pred HHHHHHHHHHHHhh--ccCceEEEEecC
Q 006961 249 NSQLISNVCTDALS--AEKYYYFIRLMG 274 (623)
Q Consensus 249 ~s~~I~ni~~da~S--~~k~~~fVevMG 274 (623)
+.+++..+..-... .++ +++++.|
T Consensus 306 ~~~i~~~l~~~~sG~~~P~--~v~~~~g 331 (331)
T TIGR00238 306 AAQIVKELARLTSGYLVPK--FAVEIMG 331 (331)
T ss_pred HHHHHHHHHhcCCCCccee--EEecCCC
Confidence 77776666533322 233 5777665
No 159
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.70 E-value=1.4e+02 Score=33.28 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.-++|||||||-. +.|.+-++ ..+...+|..+++-|.-=. ||=
T Consensus 133 ~~p~~I~viTs~~-gAa~~D~~----~~~~~r~p~~~~~~~~~~v---------------------QG~----------- 175 (438)
T PRK00286 133 FFPKRIGVITSPT-GAAIRDIL----TVLRRRFPLVEVIIYPTLV---------------------QGE----------- 175 (438)
T ss_pred CCCCEEEEEeCCc-cHHHHHHH----HHHHhcCCCCeEEEecCcC---------------------cCc-----------
Confidence 3478999999743 33444444 4444556666665544211 121
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc---CCCCeEE-EeeecccCC
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA---KCPTKVV-GVPVTLNGD 230 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~---g~~i~VI-GVPKTIDND 230 (623)
..+..+-++++.+.+.++|.+||+=|-||...-..+.++...+ .++++|| ||=--+|.=
T Consensus 176 ~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~t 238 (438)
T PRK00286 176 GAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFT 238 (438)
T ss_pred cHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCcc
Confidence 1234555666666666689999999999998876655543322 5577876 455444443
No 160
>PLN02327 CTP synthase
Probab=40.68 E-value=28 Score=40.38 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHH--HHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHH
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 254 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~--A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ 254 (623)
+..+-+.|+ +.|++++-||.|+-.. ....++++++++ +++.|| |.|+.-++-.+++-+-
T Consensus 353 y~~~~~~L~--~~DGIvvpGGfG~~~~~G~i~ai~~are~~--iP~LGI---------------ClGmQl~viefaRnvl 413 (557)
T PLN02327 353 YAAAWKLLK--GADGILVPGGFGDRGVEGKILAAKYARENK--VPYLGI---------------CLGMQIAVIEFARSVL 413 (557)
T ss_pred hhhhHHhhc--cCCEEEeCCCCCCcccccHHHHHHHHHHcC--CCEEEE---------------cHHHHHHHHHHHHhhc
Confidence 444444444 7799999999755333 333345655544 677775 9999999999999888
Q ss_pred HHHHHHhhc
Q 006961 255 NVCTDALSA 263 (623)
Q Consensus 255 ni~~da~S~ 263 (623)
.+. ||.|.
T Consensus 414 G~~-dAnS~ 421 (557)
T PLN02327 414 GLK-DANST 421 (557)
T ss_pred CCc-CCCcc
Confidence 874 88886
No 161
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=40.61 E-value=1.2e+02 Score=29.93 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh--hHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD--TICKVNSQ 251 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd--TA~~~~s~ 251 (623)
++...++++.+...++|++++.+.+.+.. ..+++.+.+ ++||.+ |++.....+ .++++| .+.+.+++
T Consensus 41 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~-~~v~~d~~~~~~~~~~ 109 (268)
T cd06298 41 KEKELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNEL-PSVNIDYKKAAFEATE 109 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCC-CEEEECcHHHHHHHHH
Confidence 34445667778889999999998654322 223333344 677766 343332221 345554 44554444
Q ss_pred HH
Q 006961 252 LI 253 (623)
Q Consensus 252 ~I 253 (623)
.+
T Consensus 110 ~l 111 (268)
T cd06298 110 LL 111 (268)
T ss_pred HH
Confidence 44
No 162
>PRK12361 hypothetical protein; Provisional
Probab=40.53 E-value=39 Score=38.85 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
....++.+.+.+.|.+|++|||||...+.. .+... ++++--+|.==-||+.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~~~--~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGDGTVTEVAS---ELVNT--DITLGIIPLGTANALS 336 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHhcC--CCCEEEecCCchhHHH
Confidence 344445555678899999999999887652 22222 4677778987788886
No 163
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=40.42 E-value=1.8e+02 Score=27.83 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHc-CCC
Q 006961 112 VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNL-NLD 190 (623)
Q Consensus 112 VI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~-~Id 190 (623)
....+.+.+... +++=+++..+... ...........+.+...|. .+.........+++.++.+.+.+++. +.+
T Consensus 111 ~~~~~~~~l~~~--~~~~i~~i~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (269)
T cd01391 111 AGEAAAEYLAEK--GWKRVALIYGDDG---AYGRERLEGFKAALKKAGI-EVVAIEYGDLDTEKGFQALLQLLKAAPKPD 184 (269)
T ss_pred HHHHHHHHHHHh--CCceEEEEecCCc---chhhHHHHHHHHHHHhcCc-EEEeccccCCCccccHHHHHHHHhcCCCCC
Confidence 344556655533 3556666655432 1111111222233344444 24433333333335677888888887 788
Q ss_pred EEEEecCcchHHHHHHHHHHHHhcCC---CCeEEEeeec
Q 006961 191 GLVIIGGVTSNTDAAYLAETFAEAKC---PTKVVGVPVT 226 (623)
Q Consensus 191 ~LviIGGdgS~~~A~~Lae~~~~~g~---~i~VIGVPKT 226 (623)
++++.+. ..|..+.+++.+.|. ++.|++.--+
T Consensus 185 ~i~~~~~----~~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 185 AIFACND----EMAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred EEEEcCc----hHHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 8888665 334444455555665 5777765433
No 164
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=40.39 E-value=43 Score=30.64 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCC---CeEEEeeecccCCCC
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCP---TKVVGVPVTLNGDLK 232 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~---i~VIGVPKTIDNDl~ 232 (623)
.-|.+|++|||||...+.. .+.+.... +++.-+|.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4579999999999888642 22223322 678888987788886
No 165
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=40.33 E-value=1.3e+02 Score=32.88 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcc-----Chhhhh------cCCe-e--ecCHh-HHhch--hhcCCccccc-CcCCCCC
Q 006961 111 NVVWGLYDALKLHNPKSTLLGFLG-----GSEGLF------AQKT-L--EVTKE-ILSTY--KNQGGYDMLG-RTKDQIR 172 (623)
Q Consensus 111 nVI~gl~~~l~~~~~~~~v~Gf~~-----G~~GL~------~~~~-~--eLt~~-~v~~~--~n~GG~~~lG-S~R~k~~ 172 (623)
+++-.+.+.++..+....||+..- |.+|-. +.++ + +.+.. +.... ...|+-..|. .-+..+-
T Consensus 184 a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~i~pD~aI~vDv~~~~d~~~~~~~~lg~Gp~i~~~D~~~i~ 263 (350)
T TIGR03107 184 LMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTKFNPDIFFAVDCSPAGDIYGDQGGKLGEGTLLRFFDPGHIM 263 (350)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhhCCCCEEEEEecCCcCCCCCCCccccCCCceEEEecCCCCC
Confidence 344455555554445677887653 666642 3332 2 22221 11110 1233324552 2235566
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
++.-.+.+.+..++++|..=+++-|-||-.++..++ ..|+.+-+|+||.
T Consensus 264 ~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~----~~Gvpt~~i~ip~ 312 (350)
T TIGR03107 264 LPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLK----NSGVPSTTIGVCA 312 (350)
T ss_pred CHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHh----CCCCcEEEEccCc
Confidence 788889999999999999877665446655555554 3699999999993
No 166
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=40.15 E-value=54 Score=35.09 Aligned_cols=52 Identities=23% Similarity=0.191 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHc-CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCC
Q 006961 175 EQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDL 231 (623)
Q Consensus 175 e~~~~i~~~l~~~-~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl 231 (623)
+..+++.+.+++. +.|.+|-|||--.+..|..+|.. + .+++|.||-|.-+|-
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs 113 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDG 113 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCc
Confidence 3445555556655 59999999999888888877752 3 479999998887654
No 167
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.95 E-value=3.2e+02 Score=27.66 Aligned_cols=67 Identities=22% Similarity=0.132 Sum_probs=46.4
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
++||++...-..|....++.|+.+.+++. +..++ +..+. .++
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~--gy~~~---------------------------------~~~~~---~~~ 42 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAI--GWNLR---------------------------------ILDGR---GSE 42 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHc--CcEEE---------------------------------EECCC---CCH
Confidence 47899998888888888999998887642 22221 11111 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcc
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVT 199 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdg 199 (623)
++..++++.+...++|++|+.+.+-
T Consensus 43 ~~~~~~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 43 AGQAAALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCH
Confidence 4456788999999999999998653
No 168
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=39.54 E-value=61 Score=31.64 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
++++.+.+.+++.++.+++.+|.+.|-. +.|.-... .....+|||||-.
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~a-----a~Lpgvva-~~t~~PVIgvP~~ 85 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGGA-----AHLPGMVA-ALTPLPVIGVPVP 85 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCcc-----chhHHHHH-hccCCCEEEecCC
Confidence 4678888999999999997766665542 22332222 2346899999953
No 169
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=38.78 E-value=53 Score=34.44 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=68.8
Q ss_pred CCChHHHHHHHHHHHHcCCC---EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH
Q 006961 171 IRTTEQVNAALTACKNLNLD---GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id---~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~ 247 (623)
.++-+.++++.+.+.+++++ .||.|||--...-|-..|..+ .+| ++.|-||-|+-.= +|.|+|--||++
T Consensus 9 ~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y-~RG--i~~i~vPTTLLa~-----vDssiGgK~~vN 80 (260)
T PF01761_consen 9 SKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTY-MRG--IPFIQVPTTLLAQ-----VDSSIGGKTGVN 80 (260)
T ss_dssp GSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHB-TT----EEEEEE-SHHHH-----HTTTSSSEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-ccC--CceEeccccHHHH-----HhcccCCCeeee
Confidence 45678899999999999995 999999987777666666544 245 8999999997543 336777777665
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHH
Q 006961 248 VNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA 319 (623)
Q Consensus 248 ~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~ 319 (623)
. ...++-+ +.=..|..|++--.+- +.++-.++...++++|+-
T Consensus 81 ~------------~~~KN~i-----------------G~f~~P~~V~iD~~~l-~tL~~~e~~~G~aEiiK~ 122 (260)
T PF01761_consen 81 F------------PGGKNLI-----------------GTFYQPEAVLIDPSFL-KTLPPREIRSGLAEIIKY 122 (260)
T ss_dssp E------------TTEEEEE-----------------EEE---SEEEEEGGGG-GGS-HHHHHHHHHHHHHH
T ss_pred C------------CCCCCcc-----------------cccCCCceeEEcHHHH-hhccHHHHHhCHHHHHHH
Confidence 3 2223321 1123688888866543 345556677777777764
No 170
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=38.13 E-value=25 Score=38.13 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=45.7
Q ss_pred eecCHhHHhchhhcCCcccccC-cCCCCCChHHHHHHHHHHHHcCC-----------------CEEEEecCcchHHHHHH
Q 006961 145 LEVTKEILSTYKNQGGYDMLGR-TKDQIRTTEQVNAALTACKNLNL-----------------DGLVIIGGVTSNTDAAY 206 (623)
Q Consensus 145 ~eLt~~~v~~~~n~GG~~~lGS-~R~k~~t~e~~~~i~~~l~~~~I-----------------d~LviIGGdgS~~~A~~ 206 (623)
-.|+++.+..+...-||+.-.- +..|. ...-.+.+.+.|.+-+| |.+|-.|||||+-.|+-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKv-hkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aas 123 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKV-HKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAAS 123 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHH-HHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhh
Confidence 4688888888887777653100 01121 12234455666666554 78999999999887664
Q ss_pred -HHHHHHhcCCCCeEEEe
Q 006961 207 -LAETFAEAKCPTKVVGV 223 (623)
Q Consensus 207 -Lae~~~~~g~~i~VIGV 223 (623)
+.+ -.++||||
T Consensus 124 rv~~------~~~PViGv 135 (395)
T KOG4180|consen 124 RVID------DSKPVIGV 135 (395)
T ss_pred hhhc------cCCceeee
Confidence 432 25899998
No 171
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=38.12 E-value=4.8e+02 Score=27.12 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=53.9
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+...|||+...-+.|=...++.|+-+.+... +.+++-+ .+. .
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~---~ 99 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQK--GYTLILC---------------------------------NAW---N 99 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---C
Confidence 3468999998877788888888988877642 2332211 000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+.+...+.++.+.+.++||+++.+++.+......|.++ .+ ++||.+
T Consensus 100 ~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~---~~--iPvV~~ 145 (341)
T PRK10703 100 NLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEEY---RH--IPMVVM 145 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhc---CC--CCEEEE
Confidence 23334556677888999999999886543322333221 34 677744
No 172
>PRK05637 anthranilate synthase component II; Provisional
Probab=37.93 E-value=65 Score=32.47 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=37.6
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 182 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 182 ~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
+.+.+.+.|++|+-||-|+-..+....+.++...-+++|.|| |+|+...+..+
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI---------------ClG~Qlla~al 90 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI---------------CLGFQALLEHH 90 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE---------------cHHHHHHHHHc
Confidence 344567899999999999998875544444322224778876 99998877765
No 173
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=37.79 E-value=40 Score=35.20 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+.+...++.+.++..+.|.+|-+||--.+..|...|... +++.|.||-+..+|=.
T Consensus 60 ~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~-----~~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 60 DEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL-----GIPFISVPTAASHDGF 114 (250)
T ss_dssp BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH-----T--EEEEES--SSGGG
T ss_pred CHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc-----CCCEEEeccccccccc
Confidence 566778888888888999999999977777766665432 5899999999888853
No 174
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=37.59 E-value=50 Score=32.48 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=35.0
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHH
Q 006961 182 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 250 (623)
Q Consensus 182 ~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s 250 (623)
+.+.+++.|+||+-||.|+-..+..-.+.+++...+++|.|| |+|+.-.+...-
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI---------------C~G~Qll~~~~G 90 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV---------------CLGHQAMGQAFG 90 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE---------------CHHHHHHHHHcC
Confidence 345667899999999998875532212222221225788876 999987766643
No 175
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.29 E-value=3.6e+02 Score=25.38 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=65.0
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHH-hchhhcCCcccccCcCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEIL-STYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v-~~~~n~GG~~~lGS~R~k~~ 172 (623)
+.+|-+.+.||+.=.+-.-+.... ++ ..|.+|+-. | ..++.+.+ +..... ..++++-|-....
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--lr--~~G~eVi~L-----G------~~vp~e~i~~~a~~~-~~d~V~lS~~~~~ 66 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--LT--EAGFEVINL-----G------VMTSQEEFIDAAIET-DADAILVSSLYGH 66 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--HH--HCCCEEEEC-----C------CCCCHHHHHHHHHHc-CCCEEEEcCcccc
Confidence 457777777777654444333332 22 346666522 1 23454433 333333 3356665544335
Q ss_pred ChHHHHHHHHHHHHcCC-CEEEEecCcchHHH--HHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNL-DGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~I-d~LviIGGdgS~~~--A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+...+...++.|++.+. +-.+++||.-+... .....+.+++.| +..|.-|.|
T Consensus 67 ~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G--~~~vf~~~~ 121 (137)
T PRK02261 67 GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG--FDRVFPPGT 121 (137)
T ss_pred CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC--CCEEECcCC
Confidence 67788889999999977 66789999764321 344445566666 455555544
No 176
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=36.94 E-value=2.4e+02 Score=28.27 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=54.8
Q ss_pred CEEEEEccChhhhhcCC---------eeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 006961 127 STLLGFLGGSEGLFAQK---------TLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 197 (623)
Q Consensus 127 ~~v~Gf~~G~~GL~~~~---------~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGG 197 (623)
..+++.-+|..=+++.. +=-++++..+.|.. .|..++-.... ++.-++++|++.+.+++.+-++++|+
T Consensus 19 ~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~-~~~~~~~~~~e--KD~TD~e~Al~~~~~~~~~~i~i~Ga 95 (203)
T TIGR01378 19 DLVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKK-AGVKIIVFPPE--KDTTDLELALKYALERGADEITILGA 95 (203)
T ss_pred CEEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHH-cCCceEEcCCC--CCCCHHHHHHHHHHHCCCCEEEEEcC
Confidence 37889999998877643 33455666666654 34334432222 34557999999999999999999998
Q ss_pred cch-----HHHHHHHHHH
Q 006961 198 VTS-----NTDAAYLAET 210 (623)
Q Consensus 198 dgS-----~~~A~~Lae~ 210 (623)
-|. +.+...|.++
T Consensus 96 ~GgR~DH~lani~~L~~~ 113 (203)
T TIGR01378 96 TGGRLDHTLANLNLLLEY 113 (203)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 664 4555555554
No 177
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.68 E-value=4.4e+02 Score=26.18 Aligned_cols=88 Identities=16% Similarity=0.036 Sum_probs=50.8
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
|||||..--..|-...++.|+-+.++++ +.++. +..+ .. -.+.+
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~-~~-~~~~~ 44 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKEL--GVKVT--------------------------------FQGP-AS-ETDVA 44 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHc--CCEEE--------------------------------EecC-cc-CCCHH
Confidence 5788875545667777778887776642 22221 0000 00 01334
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
...+.++.+...++|++|+.+.+..... ..+ +.+.+.+ ++||.+
T Consensus 45 ~~~~~i~~l~~~~vdgvii~~~~~~~~~-~~l-~~~~~~~--ipvV~~ 88 (273)
T cd06310 45 GQVNLLENAIARGPDAILLAPTDAKALV-PPL-KEAKDAG--IPVVLI 88 (273)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCChhhhH-HHH-HHHHHCC--CCEEEe
Confidence 4556788888899999999887643211 223 3334444 677765
No 178
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=36.07 E-value=3.4e+02 Score=30.26 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=99.6
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhh----------------h-cCCeeecCHhHHhchh
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL----------------F-AQKTLEVTKEILSTYK 156 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL----------------~-~~~~~eLt~~~v~~~~ 156 (623)
.+.-.|+++.|-.||+.-+|+++++ +|..|+--.-=|.-+ . ++...+++.+.++.-.
T Consensus 81 i~~e~i~~~p~VVpgi~~~I~~~T~------~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~ 154 (388)
T COG1168 81 IKPEWIVFVPGVVPGISLAIRALTK------PGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAF 154 (388)
T ss_pred CCcceEEEcCcchHhHHHHHHHhCc------CCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHH
Confidence 3455699999999999999998863 344443211111111 1 2334456666666433
Q ss_pred hcC--CcccccCcCCC---CCChHHHHHHHHHHHHcCCC-------EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 157 NQG--GYDMLGRTKDQ---IRTTEQVNAALTACKNLNLD-------GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 157 n~G--G~~~lGS~R~k---~~t~e~~~~i~~~l~~~~Id-------~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
..+ +.-+|++-..+ ..|+|.+.++.+.|++|++- +=++.+|. +...++.|++.++++ .+.+.+--
T Consensus 155 ~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a~~--~it~~saS 231 (388)
T COG1168 155 VDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFADN--SITLTSAS 231 (388)
T ss_pred hcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhhcc--eEEEeecc
Confidence 333 33466654432 34789999999999999864 34677887 777788888877532 23444434
Q ss_pred ecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC
Q 006961 225 VTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH 289 (623)
Q Consensus 225 KTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~ 289 (623)
||- +|+|.. +|-..-+--+.=+....++........+. =|.+|.++|...|
T Consensus 232 KtF--NlaGL~--~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~----------lg~~A~~aAY~~G 282 (388)
T COG1168 232 KTF--NLAGLK--CAYIIISNRELRAKFLKRLKRNGLHGPSA----------LGIIATEAAYNQG 282 (388)
T ss_pred ccc--cchhhh--heeEEecCHHHHHHHHHHHHHhcCCCCch----------HHHHHHHHHHHhc
Confidence 443 344433 22222222222234444444333333332 2788889998865
No 179
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=35.98 E-value=34 Score=36.40 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 230 (623)
.+++.++..| ....|.++||||-.|..+ .+|++-+++.+.++-.|-=|.=||-|
T Consensus 197 ~~RQ~a~~~L-a~~vD~miVVGg~~SsNT-~rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 197 KKRQESAKEL-SKEVDVMIVIGGKHSSNT-QKLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hhHHHHHHHH-HHhCCEEEEecCCCCccH-HHHHHHHHHHCCCEEEECChHHCCHH
Confidence 4566666666 357999999999998644 57888888777556666666666544
No 180
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=35.63 E-value=2.8e+02 Score=29.76 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEE
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVV 221 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VI 221 (623)
...+++..++.+++.|+..||-.+|.+.+ ||-+++..|++..|+
T Consensus 55 ~~~~l~~a~~~G~~~vvs~G~s~GN~g~a-lA~aa~~~G~~~~iv 98 (337)
T PRK12390 55 LEYLVPDALAQGADTLVSIGGVQSNHTRQ-VAAVAAHLGMKCVLV 98 (337)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHH-HHHHHHHcCCeEEEE
Confidence 45566667789999999999998888765 777888889876555
No 181
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=35.42 E-value=41 Score=36.08 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC-CCCCC-CCCCcChhhHHHHHHHH
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQF-VETNVGFDTICKVNSQL 252 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND-l~~~~-ie~S~GFdTA~~~~s~~ 252 (623)
.+++.++..|-+ ..|.++||||-.|..+ .+|++-+++.+.++-.|-=+.=||-+ +.+.. |-.|=|-.|=-..+.+.
T Consensus 198 ~~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 198 QNRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 456666666654 7999999999998644 57888888777666666666666633 22221 22333444444444444
Q ss_pred HHHH
Q 006961 253 ISNV 256 (623)
Q Consensus 253 I~ni 256 (623)
+..|
T Consensus 276 ~~~l 279 (298)
T PRK01045 276 IARL 279 (298)
T ss_pred HHHH
Confidence 4444
No 182
>CHL00101 trpG anthranilate synthase component 2
Probab=35.39 E-value=52 Score=32.40 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=31.5
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH
Q 006961 184 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247 (623)
Q Consensus 184 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~ 247 (623)
+.+.+.|++|+.||.++-.......+..+....+++|.|| |+|+.-.+.
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI---------------ClG~Qlla~ 87 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV---------------CLGHQSIGY 87 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE---------------chhHHHHHH
Confidence 4567899999999999876533222211111224677775 899886665
No 183
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=35.18 E-value=54 Score=34.83 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEecCC-CccHHHHHhhhhcCCcEEEEC
Q 006961 248 VNSQLISNVCTDALSAEKYYYFIRLMGR-RASHVALECTLQSHPNMVILG 296 (623)
Q Consensus 248 ~~s~~I~ni~~da~S~~k~~~fVevMGR-~aG~LAL~~aLat~pniilIp 296 (623)
+++++-..+. +.+...+++.||=+||- |.||++|--.-...+|.++++
T Consensus 6 ti~~lr~~~~-~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVS 54 (285)
T COG0414 6 TIAELRQAIK-ALRKEGKRVGLVPTMGNLHEGHLSLVRRAKKENDVVVVS 54 (285)
T ss_pred hHHHHHHHHH-HHHHcCCEEEEEcCCcccchHHHHHHHHHhhcCCeEEEE
Confidence 3344444443 67778888999999997 899999877766778877764
No 184
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=35.16 E-value=80 Score=35.88 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
.+++.++..|-+..+|.+|||||-.|-.+ ..|+|-+.++|.+.--|-=|.-|+
T Consensus 349 qeRQdA~~~L~~~~vDlmiVVGG~NSSNT-~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 349 QERQDAMYKLVEEKLDLMLVVGGWNSSNT-SHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHHhCCCEEEECCHHHcC
Confidence 45666777776668999999999988544 568888887776665565566666
No 185
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=35.12 E-value=3.3e+02 Score=26.20 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
++++++++++.+.+- +-++++|-..|...|..++..+...| +.+..++
T Consensus 19 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g--~~~~~~~ 66 (179)
T cd05005 19 DEEELDKLISAILNA--KRIFVYGAGRSGLVAKAFAMRLMHLG--LNVYVVG 66 (179)
T ss_pred CHHHHHHHHHHHHhC--CeEEEEecChhHHHHHHHHHHHHhCC--CeEEEeC
Confidence 567889999988765 67888888778777777777665545 4555443
No 186
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=35.09 E-value=71 Score=35.73 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
+.+.|.++.++.+.... |.+||.|||||.... ..--|++++-..+|--+|.--|
T Consensus 101 d~~gqak~l~e~~~t~~-Dii~VaGGDGT~~eV--VTGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 101 DNQGQAKALAEAVDTQE-DIIYVAGGDGTIGEV--VTGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred CcHHHHHHHHHHhccCC-CeEEEecCCCcHHHh--hHHHHhcccccCceeeccCccc
Confidence 34566777777777666 999999999998764 4455666665667766775554
No 187
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=34.78 E-value=2.9e+02 Score=28.30 Aligned_cols=45 Identities=13% Similarity=0.035 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+.....++.+...++|++++.+-+.+ ......+.+.+.| ++||.+
T Consensus 43 ~~q~~~i~~l~~~~vdgiIi~~~~~~--~~~~~l~~~~~~g--iPvV~~ 87 (302)
T TIGR02637 43 EGQIEVVNSLIAQKVDAIAISANDPD--ALVPALKKAMKRG--IKVVTW 87 (302)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChH--HHHHHHHHHHHCC--CEEEEe
Confidence 34456788898999999999876422 2112224444455 677754
No 188
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=34.65 E-value=2.3e+02 Score=26.01 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=31.2
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 192 LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 192 LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
|++|=||+....-..||+- .++| ++++.|-|+-|+.++.
T Consensus 1 ~~lIR~dn~~K~~~ALaDl-eRh~-~l~i~gkPrii~p~~A 39 (107)
T PF04009_consen 1 LILIRADNYDKILNALADL-ERHG-GLKIRGKPRIIPPEYA 39 (107)
T ss_pred CeEEecCCHHHHHHHHHHH-HHhc-CCeEecCCcccChHHH
Confidence 5788899888888888874 4445 6999999999998874
No 189
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=34.51 E-value=4.7e+02 Score=25.96 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=53.8
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
||||++..-.-|....++.|+-+.++... ..|+ + ++ -++..+.. +.+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~--------~~g~------~-~~---------------l~i~~~~~---~~~ 47 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELK--------KAGL------I-SE---------------FIVTSADG---DVA 47 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhh--------ccCC------e-eE---------------EEEecCCC---CHH
Confidence 57888877777788888888877665320 0011 0 00 01222221 234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
...+.++.+...++|++|+.+.+.... ...+ +.+.++| ++||.+-..+
T Consensus 48 ~~~~~~~~~~~~~vdgiIi~~~~~~~~-~~~l-~~~~~~~--iPvv~~~~~~ 95 (272)
T cd06300 48 QQIADIRNLIAQGVDAIIINPASPTAL-NPVI-EEACEAG--IPVVSFDGTV 95 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhhh-HHHH-HHHHHCC--CeEEEEecCC
Confidence 455677778888999999998763211 1122 3344444 7888775433
No 190
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=34.49 E-value=4.9e+02 Score=27.18 Aligned_cols=47 Identities=21% Similarity=0.150 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 222 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIG 222 (623)
+++..+.+++.++++++|+++. +-|+.....+.+.+.+.+.| +.+++
T Consensus 54 ~~~~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g--~~~~~ 100 (326)
T PRK12767 54 DPNYIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIG--VKVLV 100 (326)
T ss_pred ChhHHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcC--cEEEe
Confidence 3456778889999999996554 55666656666777776665 44443
No 191
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=34.21 E-value=5.4e+02 Score=26.56 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
.+...++++.+...++|++++.+-+.. .....+ +.+.+.+ ++||.+ |.+........+++.|
T Consensus 40 ~~~q~~~i~~l~~~~vDgIIi~~~~~~-~~~~~l-~~~~~~~--iPvV~~----d~~~~~~~~~~~V~~d 101 (302)
T TIGR02634 40 EAKQISQIENLIARGVDVLVIIPQNGQ-VLSNAV-QEAKDEG--IKVVAY----DRLINDADIDFYLSFD 101 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChh-HHHHHH-HHHHHCC--CeEEEe----cCcCCCCCccEEEecC
Confidence 344557889999999999999875532 112223 3444454 788865 4444322222355554
No 192
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=33.93 E-value=3.7e+02 Score=28.38 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=53.2
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+.++||++...-.-|..+.++.|+.+.++... +..+ ++..+. .
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g-~~~~---------------------------------~~~~~~---~ 65 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAP-DVQL---------------------------------LMNDSQ---N 65 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhcC-CeEE---------------------------------EEecCC---C
Confidence 34688888876667777777777777665321 1111 111111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
+.+...+.++.+...++|++++.+.+..... ..+ +.+++.+ ++||.+=.
T Consensus 66 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~g--iPvV~vd~ 114 (330)
T PRK15395 66 DQSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQD--VPVVFFNK 114 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCC--CcEEEEcC
Confidence 2233335677889999999999987653332 223 3344455 67776643
No 193
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=33.82 E-value=5.6e+02 Score=26.61 Aligned_cols=89 Identities=29% Similarity=0.378 Sum_probs=50.6
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
+|||+.+ ++-|....++.|+.+.|+.. |+ .+ +.+++ .+.+.-| +.+
T Consensus 1 ~v~i~~~-~~~~~~~~~~~gf~~~L~~~-----------g~---~~-~~~~~------~~~~a~~------------d~~ 46 (294)
T PF04392_consen 1 KVGILQF-ISHPALDDIVRGFKDGLKEL-----------GY---DE-KNVEI------EYKNAEG------------DPE 46 (294)
T ss_dssp EEEEEES-S--HHHHHHHHHHHHHHHHT-----------T-----C-CCEEE------EEEE-TT-------------HH
T ss_pred CeEEEEE-eccHHHHHHHHHHHHHHHHc-----------CC---cc-ccEEE------EEecCCC------------CHH
Confidence 5888886 47888999999999998743 22 22 22222 1222222 346
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
.+.++++.+...+.|.++.+|.+-+.. +.++.. + .++||.+-.
T Consensus 47 ~~~~~~~~l~~~~~DlIi~~gt~aa~~----~~~~~~--~-~iPVVf~~V 89 (294)
T PF04392_consen 47 KLRQIARKLKAQKPDLIIAIGTPAAQA----LAKHLK--D-DIPVVFCGV 89 (294)
T ss_dssp HHHHHHHHHCCTS-SEEEEESHHHHHH----HHHH-S--S--S-EEEECE
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHHHH----HHHhcC--C-CcEEEEEec
Confidence 677888889999999888887555333 333322 2 167776654
No 194
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=33.54 E-value=3.9e+02 Score=24.63 Aligned_cols=68 Identities=24% Similarity=0.179 Sum_probs=45.1
Q ss_pred ecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecC
Q 006961 195 IGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274 (623)
Q Consensus 195 IGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMG 274 (623)
-||.|.-+-+..|+.++.++|.++.+ +|-|..++.++ . .|.+|-+-+
T Consensus 8 kgg~gkt~~~~~~a~~~~~~~~~~~~------vd~D~~~~~~~--------------------------y-d~VIiD~p~ 54 (139)
T cd02038 8 KGGVGKTNISANLALALAKLGKRVLL------LDADLGLANLD--------------------------Y-DYIIIDTGA 54 (139)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCcEEE------EECCCCCCCCC--------------------------C-CEEEEECCC
Confidence 38899988999999999988754443 67787665532 2 245666654
Q ss_pred CCccHHHHHhhhhcCCcEEEECCc
Q 006961 275 RRASHVALECTLQSHPNMVILGEE 298 (623)
Q Consensus 275 R~aG~LAL~~aLat~pniilIpEe 298 (623)
..++.+..+ ..++|.+++|=+
T Consensus 55 -~~~~~~~~~--l~~aD~vviv~~ 75 (139)
T cd02038 55 -GISDNVLDF--FLAADEVIVVTT 75 (139)
T ss_pred -CCCHHHHHH--HHhCCeEEEEcC
Confidence 566666543 345677777643
No 195
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=33.04 E-value=3.1e+02 Score=29.35 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCC
Q 006961 173 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF 235 (623)
Q Consensus 173 t~e~~~~i~~~l~~~--~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ 235 (623)
+++++.++.+.+++. +.|++||.-|-|||...+.+-..+.+ +...+||-.=.-.--+-.++|
T Consensus 55 t~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~-~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 55 TPEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLD-NLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp -HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEE-S-SSEEEEE--SS-TTSTT-S
T ss_pred CHHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhc-CCCCCEEEeCCcCCCcCCCCc
Confidence 456666666655554 69999999999999986555444443 334677755333333333344
No 196
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=32.97 E-value=2.9e+02 Score=29.04 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC-CcE-EEECCcchhccCCHHHHHHHHHHHHHH
Q 006961 242 FDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH-PNM-VILGEEVAASKLTLFDLTKQICDAVQA 319 (623)
Q Consensus 242 FdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~-pni-ilIpEe~~~~~~tL~~iv~~I~~~I~~ 319 (623)
|+-|++.++.+.+-+. .++. |.+ +.|+..+--..-+-||++ .+. ++-++. .++.++.++-+++...+.+
T Consensus 13 f~~ai~hi~ri~RvL~-----~~~G-h~L-LvG~~GsGr~sl~rLaa~i~~~~~~~i~~--~~~y~~~~f~~dLk~~~~~ 83 (268)
T PF12780_consen 13 FDEAIEHIARISRVLS-----QPRG-HAL-LVGVGGSGRQSLARLAAFICGYEVFQIEI--TKGYSIKDFKEDLKKALQK 83 (268)
T ss_dssp -HHHHHHHHHHHHHHC-----STTE-EEE-EECTTTSCHHHHHHHHHHHTTEEEE-TTT--STTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-----CCCC-CeE-EecCCCccHHHHHHHHHHHhccceEEEEe--eCCcCHHHHHHHHHHHHHH
Confidence 5666666666655542 4444 555 666655444444556654 232 333432 3457788888888887775
Q ss_pred HHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCC
Q 006961 320 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGV 358 (623)
Q Consensus 320 R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~ 358 (623)
---+|+ ..+.++.+--+.. ..+++.+|.+++.|.
T Consensus 84 ag~~~~-~~vfll~d~qi~~----~~fLe~in~LL~sGe 117 (268)
T PF12780_consen 84 AGIKGK-PTVFLLTDSQIVD----ESFLEDINSLLSSGE 117 (268)
T ss_dssp HHCS-S--EEEEEECCCSSS----CHHHHHHHHHHHCSS
T ss_pred HhccCC-CeEEEecCcccch----HhHHHHHHHHHhCCC
Confidence 443443 4555666643321 157788899998874
No 197
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=32.68 E-value=5.1e+02 Score=25.75 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
.....++.+...++|++++.+.+.+... ..+ +.+.+.+ ++||.+
T Consensus 44 ~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~-~~~~~~~--ipvV~~ 87 (270)
T cd06308 44 KQVADIENFIRQGVDLLIISPNEAAPLT-PVV-EEAYRAG--IPVILL 87 (270)
T ss_pred HHHHHHHHHHHhCCCEEEEecCchhhch-HHH-HHHHHCC--CCEEEe
Confidence 3445677788899999999876633211 223 2333444 677655
No 198
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=32.39 E-value=50 Score=32.40 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHH
Q 006961 182 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 248 (623)
Q Consensus 182 ~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~ 248 (623)
+.+++++.|++|+-||.++-.......+.++....+++|+|| |+|+..-+..
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI---------------C~G~Qlla~~ 88 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV---------------CLGHQALGQA 88 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE---------------CHHHHHHHHH
Confidence 335677999999999999876543222222221225788876 8888765554
No 199
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=32.16 E-value=1.3e+02 Score=34.24 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=53.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHh---------hccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHH
Q 006961 241 GFDTICKVNSQLISNVCTDAL---------SAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTK 311 (623)
Q Consensus 241 GFdTA~~~~s~~I~ni~~da~---------S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~ 311 (623)
|=.|++++.+....-=+.+|+ ||-..+-+..+-|..-.-+|+.----.+||++++-| |..++++.. ++
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE--PTNNLDIES-ID 741 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE--PTNNLDIES-ID 741 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC--CCCCcchhh-HH
Confidence 335777776654433333332 343446677788887777775433334799999888 355676655 46
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeC
Q 006961 312 QICDAVQARAEQDKNHGVILLPE 334 (623)
Q Consensus 312 ~I~~~I~~R~~~gk~~gVIvVsE 334 (623)
-++++|. .-+-|||+|+-
T Consensus 742 ALaEAIn-----ey~GgVi~VsH 759 (807)
T KOG0066|consen 742 ALAEAIN-----EYNGGVIMVSH 759 (807)
T ss_pred HHHHHHH-----hccCcEEEEec
Confidence 6666665 24668998874
No 200
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=31.58 E-value=2.7e+02 Score=32.59 Aligned_cols=86 Identities=28% Similarity=0.352 Sum_probs=58.4
Q ss_pred HcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccC
Q 006961 186 NLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEK 265 (623)
Q Consensus 186 ~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k 265 (623)
-.-||+++|-+|-=+...|..|-+++-..|+ --|+-=|.||| .|+.+..=|..++.
T Consensus 121 G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~-~yv~fKPGtIe-----------------------qI~svi~IAka~P~ 176 (717)
T COG4981 121 GAPIDGVVISAGIPSLEEAVELIEELGDDGF-PYVAFKPGTIE-----------------------QIRSVIRIAKANPT 176 (717)
T ss_pred CCCcceEEEecCCCcHHHHHHHHHHHhhcCc-eeEEecCCcHH-----------------------HHHHHHHHHhcCCC
Confidence 4579999999999999999999998866664 12333465554 22333223333333
Q ss_pred ceEEEEecCCCc-cH----------HHHHhhhhcCCcEEEE
Q 006961 266 YYYFIRLMGRRA-SH----------VALECTLQSHPNMVIL 295 (623)
Q Consensus 266 ~~~fVevMGR~a-G~----------LAL~~aLat~pniilI 295 (623)
.=.++..-|..| || ||.++.|.+++|++++
T Consensus 177 ~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~ 217 (717)
T COG4981 177 FPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLC 217 (717)
T ss_pred CceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEE
Confidence 235667666555 44 7889999999999887
No 201
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=31.35 E-value=56 Score=37.39 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=76.5
Q ss_pred CCeeecCHh---HHhchhhcCCcccccCcCCCC--CChHHHHHH-HHHHHHcCCCEEEEecCcchHHHHHH--HHHHHHh
Q 006961 142 QKTLEVTKE---ILSTYKNQGGYDMLGRTKDQI--RTTEQVNAA-LTACKNLNLDGLVIIGGVTSNTDAAY--LAETFAE 213 (623)
Q Consensus 142 ~~~~eLt~~---~v~~~~n~GG~~~lGS~R~k~--~t~e~~~~i-~~~l~~~~Id~LviIGGdgS~~~A~~--Lae~~~~ 213 (623)
++|++|.+. .++.+.+.|- -.+.. -++ -+.++++.. .+.+.++ +|+++|-||.|.--..-+ -++|+++
T Consensus 295 GKYv~l~DaY~Sv~EAL~hag~--~~~~~-v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG~RG~eGkI~Ai~yARE 370 (533)
T COG0504 295 GKYVELPDAYKSVIEALKHAGI--ALGVK-VNIKWIDSEDLEEENAAELEKL-VDGILVPGGFGYRGVEGKIAAIRYARE 370 (533)
T ss_pred ECCcCchhHHHHHHHHHHhhhh--hcCCc-eeeEEEccccccccchhhhhhc-CCEEEeCCCCCcCchHHHHHHHHHHHh
Confidence 477777765 3444555443 22221 111 123333321 2234444 999999999996433333 3456666
Q ss_pred cCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhcc----CceEEEEecCCCccHHHHHhhhhcC
Q 006961 214 AKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE----KYYYFIRLMGRRASHVALECTLQSH 289 (623)
Q Consensus 214 ~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~----k~~~fVevMGR~aG~LAL~~aLat~ 289 (623)
++ ++..|| |+|+..|+=.+++-+-.+ .+|.|+. --+-||.+|.-..+---+...+-.|
T Consensus 371 n~--iP~lGI---------------ClGmQ~aviE~ARnv~Gl-~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG 432 (533)
T COG0504 371 NN--IPFLGI---------------CLGMQLAVIEFARNVLGL-EGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLG 432 (533)
T ss_pred cC--CCEEEE---------------chhHHHHHHHHHHHhcCC-ccCcccccCCCCCCceEEeccccccCCcCCceeecc
Confidence 55 677765 999999999999988777 4888863 1135777776654443344444444
Q ss_pred CcEEEE
Q 006961 290 PNMVIL 295 (623)
Q Consensus 290 pniilI 295 (623)
+--|.|
T Consensus 433 ~y~~~l 438 (533)
T COG0504 433 AYPCRL 438 (533)
T ss_pred ceeeec
Confidence 443443
No 202
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=31.35 E-value=4.3e+02 Score=24.77 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEec-CcchHHHHHHHHHHHHhcCCC
Q 006961 173 TTEQVNAALTACKNLN---LDGLVIIG-GVTSNTDAAYLAETFAEAKCP 217 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~---Id~LviIG-GdgS~~~A~~Lae~~~~~g~~ 217 (623)
+.+.+.++++.+++++ +...+++| ++++......+.+++++.+..
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 182 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPD 182 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 4577888899999999 45556666 346888888888888777753
No 203
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=31.11 E-value=8.2e+02 Score=27.70 Aligned_cols=139 Identities=14% Similarity=0.196 Sum_probs=89.9
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
.+||--. ||-=-+||.+.++..+.. +.-| .++-|...|+.+ ||. +. .|+.
T Consensus 13 ~~Gi~SV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVdq~---GGY-------TG-mtP~ 62 (421)
T PRK15052 13 HIGICSV---CSAHPLVIEAALAFDLNS--TRKV--------------LIEATSNQVNQF---GGY-------TG-MTPA 62 (421)
T ss_pred CCceeeE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc-------CC-CCHH
Confidence 3455443 444558999888766532 2222 378888888887 885 22 3566
Q ss_pred HHHH-HHHHHHHcCCCE-EEEecCcc-------------hHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCc
Q 006961 176 QVNA-ALTACKNLNLDG-LVIIGGVT-------------SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV 240 (623)
Q Consensus 176 ~~~~-i~~~l~~~~Id~-LviIGGdg-------------S~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~ 240 (623)
+|.. +.+..++.+++. .+++|||- .|..|..|.+.+.+.|+ .-|++=.|++ .. +...-+
T Consensus 63 dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF--~kIHLD~Sm~--ca--~d~~~L 136 (421)
T PRK15052 63 DFREFVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGF--SKIHLDASMS--CA--DDPIPL 136 (421)
T ss_pred HHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC--ceEEecCCCC--cc--CCCccC
Confidence 6544 456677889998 99999983 56667777766667774 7778777777 11 112567
Q ss_pred ChhhHHHHHHHHHHHHHHHHhh--ccCceEEE
Q 006961 241 GFDTICKVNSQLISNVCTDALS--AEKYYYFI 270 (623)
Q Consensus 241 GFdTA~~~~s~~I~ni~~da~S--~~k~~~fV 270 (623)
.-+|.++-.++++.-.-..+.. ...-+|+|
T Consensus 137 ~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 137 APETVAERAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe
Confidence 7888999999988855443332 22234555
No 204
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.56 E-value=1.5e+02 Score=28.82 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=53.3
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
..+|.++ |+ .| .++..+.+.+++.+|+.++.|..+||-+..+. .+.++.+...+ .+++=.+-..++.
T Consensus 46 ~~~v~ll--G~-~~---~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~------~~i~~~I~~~~-pdiv~vglG~PkQ 112 (171)
T cd06533 46 GLRVFLL--GA-KP---EVLEKAAERLRARYPGLKIVGYHHGYFGPEEE------EEIIERINASG-ADILFVGLGAPKQ 112 (171)
T ss_pred CCeEEEE--CC-CH---HHHHHHHHHHHHHCCCcEEEEecCCCCChhhH------HHHHHHHHHcC-CCEEEEECCCCHH
Confidence 4677766 33 33 35555556677789999999999999873221 12455555444 4676555444433
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecC
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGG 197 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGG 197 (623)
|.- +.++..+++-...+.+||
T Consensus 113 E~~---~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 113 ELW---IARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHH---HHHHHHHCCCCEEEEece
Confidence 322 334445556777777888
No 205
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=30.36 E-value=6.8e+02 Score=26.49 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=60.3
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++.+-..|--+.++.|+.+.+.+. +..++ +.++. .
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~--g~~l~---------------------------------i~~~~---~ 65 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVF---------------------------------VQSAN---G 65 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---C
Confidence 4689999999999999999999999887642 23222 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+++...+.++.+...++|++++.+.+.+.. ...+ +.+.+.+ ++||.+-..+
T Consensus 66 ~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~-~~~l-~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 66 NEETQMSQIENMINRGVDVLVIIPYNGQVL-SNVI-KEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhH-HHHH-HHHHHCC--CeEEEECCCC
Confidence 234555678889999999999997653311 1223 3344444 7888774444
No 206
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.30 E-value=3.9e+02 Score=26.54 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=19.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALK 121 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~ 121 (623)
+||||...-..|=...++.|+.+.++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~ 26 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAK 26 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHH
Confidence 47777776677777777777777765
No 207
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=30.30 E-value=3.2e+02 Score=26.83 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=59.4
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHH
Q 006961 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 176 (623)
Q Consensus 97 IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~ 176 (623)
|||+...-..|-...++.|+.+++... +..+.-+ .. . .+++.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~~---------------------------------~~--~-~~~~~ 43 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAH--GYQVLVC---------------------------------NS--D-NDPEK 43 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHc--CCEEEEE---------------------------------cC--C-CCHHH
Confidence 678887777888888999998887642 2333210 00 0 12233
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
....++.+...++|++++.+.+.... .+ +.+.+.+ ++||.+ |.++....+ .++|.|-
T Consensus 44 ~~~~~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d~ 100 (267)
T cd06283 44 EKEYLESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGV-DTVTLDN 100 (267)
T ss_pred HHHHHHHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCC-CEEEecc
Confidence 44677788889999999998765422 23 3333344 677764 555543221 4677664
No 208
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=30.26 E-value=88 Score=30.31 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
++++.+.+.++++++.+.+.+|.+-|-.. .=+-.++-. ...+|||||-
T Consensus 39 R~p~~l~~~~~~~~~~~~~viIa~AG~~a-~Lpgvva~~-----t~~PVIgvP~ 86 (150)
T PF00731_consen 39 RTPERLLEFVKEYEARGADVIIAVAGMSA-ALPGVVASL-----TTLPVIGVPV 86 (150)
T ss_dssp TSHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHH-----SSS-EEEEEE
T ss_pred CCHHHHHHHHHHhccCCCEEEEEECCCcc-cchhhheec-----cCCCEEEeec
Confidence 46778888888888888887777666532 223344432 3579999993
No 209
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.23 E-value=2.5e+02 Score=27.96 Aligned_cols=86 Identities=22% Similarity=0.139 Sum_probs=52.3
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHH
Q 006961 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 176 (623)
Q Consensus 97 IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~ 176 (623)
||||+..-..|-...++.|+-+.+++. +.+++- ..+. .+++.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~---------------------------------~~~~---~~~~~ 43 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQY--GYTVLL---------------------------------CNTY---RGGVS 43 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCC---CChHH
Confidence 788888777888888888888877632 232221 0011 12344
Q ss_pred HHHHHHHHHHcCCCEEEEecCcch-H-HHHHHHHHHHHhcCCCCeEEEe
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTS-N-TDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS-~-~~A~~Lae~~~~~g~~i~VIGV 223 (623)
..+.++.+...++|++++.+..-. . ..+..+ +.+.++| ++||.+
T Consensus 44 ~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i-~~~~~~~--ipvV~i 89 (273)
T cd06292 44 EADYVEDLLARGVRGVVFISSLHADTHADHSHY-ERLAERG--LPVVLV 89 (273)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcccchhHHH-HHHHhCC--CCEEEE
Confidence 556789999999999999985422 2 122223 3344444 677765
No 210
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=30.05 E-value=3.7e+02 Score=26.83 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
+...+.++.+...++|++++...+.. .....+. .+.+ +++||.+ |++......-.++++|
T Consensus 42 ~~~~~~i~~l~~~~vDgiIi~~~~~~-~~~~~l~-~~~~---~ipvV~~----~~~~~~~~~~~~V~~D 101 (271)
T cd06314 42 NAQLRMLEDLIAEGVDGIAISPIDPK-AVIPALN-KAAA---GIKLITT----DSDAPDSGRYVYIGTD 101 (271)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCChh-HhHHHHH-HHhc---CCCEEEe----cCCCCccceeEEEccC
Confidence 34456778889999999999986521 1222333 3333 4677765 4444321111356665
No 211
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=30.01 E-value=3.1e+02 Score=26.90 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=49.8
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHH
Q 006961 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 176 (623)
Q Consensus 97 IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~ 176 (623)
||||+..-..|-.+..+.|+-+.+... |.++. +..+. .+++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYEN--GYQML---------------------------------LMNTN---FSIEK 43 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---CCHHH
Confidence 788887777787777888887776532 22221 11111 12334
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
..+.++.+...++|++|+.+.+.+.. +.+.+.+.+ ++||.+
T Consensus 44 ~~~~i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~--ipvv~~ 84 (259)
T cd01542 44 EIEALELLARQKVDGIILLATTITDE----HREAIKKLN--VPVVVV 84 (259)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEE
Confidence 45566778889999999998764422 223334444 667665
No 212
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.91 E-value=51 Score=32.27 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=37.0
Q ss_pred HHHHHHHHHHH---cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 006961 176 QVNAALTACKN---LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 176 ~~~~i~~~l~~---~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 230 (623)
+..-+++.++- .++|.++++-||+=++- |++.++++|..+-++|+|+....+
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~ 144 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPGFSTA 144 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCCChHH
Confidence 44555555544 69999999999998765 556667789888888877544333
No 213
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=29.89 E-value=2.1e+02 Score=28.68 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCCEEEEec
Q 006961 179 AALTACKNLNLDGLVIIG 196 (623)
Q Consensus 179 ~i~~~l~~~~Id~LviIG 196 (623)
.+.+.+++.+.|.+|+.|
T Consensus 71 ~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 71 ALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHhCcCEEEhHH
Confidence 456778888888766543
No 214
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=29.83 E-value=1.2e+02 Score=33.29 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=67.3
Q ss_pred EecCCCCCc-hHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCC---eeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 100 VFCGRQSPG-GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---TLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 100 v~sGG~aPG-~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~---~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
+.+||-+.| ++.+ .+.+.+++..++.+++|.-++ ++-+.- ..+++.-.+.++. ..+.. -+.--.
T Consensus 9 ~i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~v~G~~-----~~l~~---~~~~~~ 76 (385)
T TIGR00215 9 ALVAGEASGDILGA--GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELSVMGLR-----EVLGR---LGRLLK 76 (385)
T ss_pred EEEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhhhccHH-----HHHHH---HHHHHH
Confidence 344444444 6655 778888776778888886532 111111 1122221222111 01110 011123
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE-eeecccCCCCCCCCCCCcChhhHHHHHHHHHH
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG-VPVTLNGDLKNQFVETNVGFDTICKVNSQLIS 254 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIG-VPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ 254 (623)
-+.++.+.+++.+.|.+|.+||-+-+-. ++...+..| ++++. ||-.+ | +.. .-+.+.++..++
T Consensus 77 ~~~~~~~~l~~~kPd~vi~~g~~~~~~~---~a~aa~~~g--ip~v~~i~P~~-w---------aw~-~~~~r~l~~~~d 140 (385)
T TIGR00215 77 IRKEVVQLAKQAKPDLLVGIDAPDFNLT---KELKKKDPG--IKIIYYISPQV-W---------AWR-KWRAKKIEKATD 140 (385)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccHH---HHHHHhhCC--CCEEEEeCCcH-h---------hcC-cchHHHHHHHHh
Confidence 4567889999999999999998553322 323333344 45542 33221 1 112 113677777777
Q ss_pred HHHHHH
Q 006961 255 NVCTDA 260 (623)
Q Consensus 255 ni~~da 260 (623)
.+....
T Consensus 141 ~v~~~~ 146 (385)
T TIGR00215 141 FLLAIL 146 (385)
T ss_pred HhhccC
Confidence 776433
No 215
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=29.72 E-value=1.3e+02 Score=31.51 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCCEEEEec-----CcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 179 AALTACKNLNLDGLVIIG-----GVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 179 ~i~~~l~~~~Id~LviIG-----GdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
.+++.+-.+|.|-.|.|- |-|+..+|..|++++++.++++-+.|- .|+|+|-.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~tg 128 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYAQ 128 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCCC
Confidence 456677788999888874 569999999999999988888888886 78888864
No 216
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=29.63 E-value=83 Score=33.52 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=30.1
Q ss_pred HHHhhccCceEEEEecCC-CccHHHHHhhhhcCCcEEEEC
Q 006961 258 TDALSAEKYYYFIRLMGR-RASHVALECTLQSHPNMVILG 296 (623)
Q Consensus 258 ~da~S~~k~~~fVevMGR-~aG~LAL~~aLat~pniilIp 296 (623)
...+...+.+.||=+||- |.||++|--.-..+.|+++++
T Consensus 15 ~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~~~d~vVVS 54 (280)
T PF02569_consen 15 RAWRKAGKTIGFVPTMGALHEGHLSLIRRARAENDVVVVS 54 (280)
T ss_dssp HHHHHTTSSEEEEEE-SS--HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHHcCCeEEEECCCchhhHHHHHHHHHHHhCCCEEEEE
Confidence 444455778999999997 899999988888888888873
No 217
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=29.58 E-value=1.1e+02 Score=35.37 Aligned_cols=52 Identities=27% Similarity=0.343 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~---Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++.+.+.+.+ -|.+|-|||--++..|..+|..+ .+| +++|-||-|+
T Consensus 251 sl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl 305 (542)
T PRK14021 251 TIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL 305 (542)
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH
Confidence 4567788888888884 89999999988888877776532 234 8999999886
No 218
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=29.21 E-value=4.1e+02 Score=27.00 Aligned_cols=112 Identities=18% Similarity=0.056 Sum_probs=59.0
Q ss_pred EEEEEecCCC-CCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 96 RVGIVFCGRQ-SPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 96 ~IgIv~sGG~-aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
||++|....+ ..|+..+++.+.+.+.+......++....+......... .++...+ .+. ..
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~-------------~~~~~~~--~~~---~~ 62 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGE-------------QEVVRVI--VLD---NP 62 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCc-------------ccceeee--ecC---Cc
Confidence 5788877766 779999999999998765444445444333221111100 0111111 111 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHH--HHHHHHHHHhcCCCCeEEEeeecc
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTD--AAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~--A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
..+..+.+.+++.+.|.+++--..+.... ...+.... +..++++|...-..
T Consensus 63 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~h~~ 115 (366)
T cd03822 63 LDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLL--RGLGIPVVVTLHTV 115 (366)
T ss_pred hhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHH--hhcCCCEEEEEecC
Confidence 34456677788999998777543332211 11121111 23357777665444
No 219
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.92 E-value=1.9e+02 Score=30.27 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=57.6
Q ss_pred EEEEEccChhhhhcCCeeecCHhHHhchhhcCCccccc--CcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchH----
Q 006961 128 TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN---- 201 (623)
Q Consensus 128 ~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lG--S~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~---- 201 (623)
..+-+-+|..|-. ..-|-.....+++.-|...+- ++|+ .+..+++..+..+..+||+.+++++||-+.
T Consensus 30 d~isvT~~~~~~~----~~~t~~~a~~l~~~~g~~~i~Hlt~r~--~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~ 103 (272)
T TIGR00676 30 DFVSVTYGAGGST----RDRTVRIVRRIKKETGIPTVPHLTCIG--ATREEIREILREYRELGIRHILALRGDPPKGEGT 103 (272)
T ss_pred CEEEeccCCCCCc----HHHHHHHHHHHHHhcCCCeeEEeeecC--CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCC
Confidence 4566666666522 222334455566554544332 3455 367788899999999999999999999872
Q ss_pred ------HHHHHHHHHHHhc--CCCCeEEEee
Q 006961 202 ------TDAAYLAETFAEA--KCPTKVVGVP 224 (623)
Q Consensus 202 ------~~A~~Lae~~~~~--g~~i~VIGVP 224 (623)
..|..|-+..++. ...+-+.+.|
T Consensus 104 ~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~P 134 (272)
T TIGR00676 104 PTPGGFNYASELVEFIRNEFGDFDIGVAAYP 134 (272)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCeeEEEEeCC
Confidence 3466677776654 2344555555
No 220
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.82 E-value=1.3e+02 Score=33.61 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 230 (623)
..+++.++..|-+.++|.++||||--|.. ..+|++-+++.+.++-.|-=+.=||-+
T Consensus 274 T~~RQ~A~~~La~~~vD~miVVGG~nSSN-T~rL~eia~~~g~~ty~Ie~~~eL~~~ 329 (387)
T PRK13371 274 TQERQDAMFSLVEEPLDLMVVIGGYNSSN-TTHLQEIAIERGIPSYHIDSPERILSG 329 (387)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCCCCcc-HHHHHHHHHhcCCCEEEECCHHHcCCc
Confidence 35677777777667899999999998854 467999888877666666666666653
No 221
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=28.60 E-value=1.1e+02 Score=32.54 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=63.2
Q ss_pred EEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHH-HHH
Q 006961 128 TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTD-AAY 206 (623)
Q Consensus 128 ~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~-A~~ 206 (623)
++.-+.|-..| +++....-.+....+...|.. ... ..+. ...+..++++.+...+.|.+|+.|||||... ++-
T Consensus 4 ~~~~i~Np~sG--~~~~~~~~~~~~~~l~~~g~~-~~~-~~t~--~~g~a~~~a~~a~~~~~D~via~GGDGTv~eving 77 (301)
T COG1597 4 KALLIYNPTSG--KGKAKKLLREVEELLEEAGHE-LSV-RVTE--EAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANG 77 (301)
T ss_pred eEEEEEccccc--ccchhhHHHHHHHHHHhcCCe-EEE-EEee--cCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 45566666666 333333333444455555553 221 1111 1124556677777779999999999999885 445
Q ss_pred HHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh-HHHHHHHHHH
Q 006961 207 LAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT-ICKVNSQLIS 254 (623)
Q Consensus 207 Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT-A~~~~s~~I~ 254 (623)
|++ .+... +--||.===||+. .++|.-. ....+.+.|.
T Consensus 78 l~~----~~~~~-LgilP~GT~NdfA-----r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 78 LAG----TDDPP-LGILPGGTANDFA-----RALGIPLDDIEAALELIK 116 (301)
T ss_pred Hhc----CCCCc-eEEecCCchHHHH-----HHcCCCchhHHHHHHHHH
Confidence 544 33222 6667877778875 5666665 2444444443
No 222
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.42 E-value=5.8e+02 Score=25.07 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=52.9
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
.||||+.+-..|-...++.|+-+.+++. +..+.-+ .+.. .+.+
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~--~~~~~~~--------------------------------~~~~---~~~~ 43 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAAREA--GYAVTLS--------------------------------MLAE---ADEE 43 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHHC--CCeEEEE--------------------------------eCCC---CchH
Confidence 3788888888888888888888877642 2332211 1111 1123
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
...+.++.+.+.++|++++.+-+.+.. + +.+ +.+.| ++||.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~--ipvv~~ 85 (264)
T cd01574 44 ALRAAVRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPAD--VPVVFV 85 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcC--CCEEEE
Confidence 445677888899999999988765543 2 222 23344 677766
No 223
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=28.28 E-value=1.5e+02 Score=31.88 Aligned_cols=102 Identities=25% Similarity=0.312 Sum_probs=59.0
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+...||++..--..|=-..++.|+-+.+... +.. .++..+..
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~--gy~---------------------------------~~l~~~~~--- 98 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREA--GYS---------------------------------LLLANTDD--- 98 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCE---------------------------------EEEECCCC---
Confidence 4456777766444566666666666655422 111 24444443
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
+++..+.+++.+...++||+|+.| ..+... +.+.+.+.+ +++|-+=.+.+ |.. . .++++|
T Consensus 99 ~~~~e~~~~~~l~~~~vdGiIi~~-~~~~~~---~~~~l~~~~--~P~V~i~~~~~-~~~--~--~~V~~D 158 (333)
T COG1609 99 DPEKEREYLETLLQKRVDGLILLG-ERPNDS---LLELLAAAG--IPVVVIDRSPP-GLG--V--PSVGID 158 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec-CCCCHH---HHHHHHhcC--CCEEEEeCCCc-cCC--C--CEEEEC
Confidence 466778899999999999999999 222222 222333344 56666544444 221 1 466665
No 224
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.20 E-value=1.3e+02 Score=27.30 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 222 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIG 222 (623)
.++....+++.|.++++.+++++.|.. ...+.+.+++.| ++++|
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~----~~~~~~~a~~~g--i~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAE----SEELIEAAREAG--IRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS------HHHHHHHHHTT---EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchH----HHHHHHHHHHcC--CEEEe
Confidence 356778899999999999999999932 234445555555 67876
No 225
>PLN02335 anthranilate synthase
Probab=27.02 E-value=90 Score=31.75 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=34.0
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHH
Q 006961 184 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247 (623)
Q Consensus 184 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~ 247 (623)
+..++.|++|+-||-++-......-+..++.+-+++|.|| |+||.--+.
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI---------------ClG~QlLa~ 106 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV---------------CMGLQCIGE 106 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe---------------cHHHHHHHH
Confidence 3456899999999999887654333444444445777775 999985444
No 226
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=26.52 E-value=5.4e+02 Score=26.38 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=70.0
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+| +|.+.|.++.-+.|..+.++..+|+.+++...- |+ +.
T Consensus 119 ~t~kVG~I-~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~~------------------------------g~----~~ 163 (258)
T cd06353 119 KTNKVGYV-AAFPIPEVVRGINAFALGARSVNPDATVKVIWT------------------------------GS----WF 163 (258)
T ss_pred cCCcEEEE-cCcccHHHHHHHHHHHHHHHHHCCCcEEEEEEe------------------------------cC----CC
Confidence 34578888 456778888888888888876777766653211 11 11
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 252 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~ 252 (623)
++..-.++.+.+...+.|.++-.+ ++ .++. +.++++| +.+||+-.--+.+-+..- -.|+++-....
T Consensus 164 D~~~a~~~a~~l~~~G~DvI~~~~--~~-~g~~---~aa~~~g--~~~IG~d~dq~~~~~~~v------ltS~v~~~~~~ 229 (258)
T cd06353 164 DPAKEKEAALALIDQGADVIYQHT--DS-PGVI---QAAEEKG--VYAIGYVSDMSKFAPKAV------LTSAVWNWGPY 229 (258)
T ss_pred CcHHHHHHHHHHHHCCCcEEEecC--CC-hHHH---HHHHHhC--CEEEeeccchhhhCCCCE------EEEEeeehHHH
Confidence 233335566777788999888886 11 2332 2333455 788888533333333211 23455555555
Q ss_pred HHHHHHHHhh
Q 006961 253 ISNVCTDALS 262 (623)
Q Consensus 253 I~ni~~da~S 262 (623)
+.++..++..
T Consensus 230 ~~~~~~~~~~ 239 (258)
T cd06353 230 YVAAVKAVLD 239 (258)
T ss_pred HHHHHHHHHc
Confidence 5555555443
No 227
>PRK07591 threonine synthase; Validated
Probab=26.20 E-value=1.9e+02 Score=32.28 Aligned_cols=145 Identities=19% Similarity=0.171 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC------CCCCCCCCCc-ChhhHHHHHH
Q 006961 178 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD------LKNQFVETNV-GFDTICKVNS 250 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND------l~~~~ie~S~-GFdTA~~~~s 250 (623)
.-++..+++.+.+.++ .+..| |++ ..||-+++..|++ .+|.||.++... ..|-.+...- .||.|.+...
T Consensus 126 ~~~v~~A~~~g~~~vv-~aSsG-N~g-~alA~~aa~~Gl~-~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~ 201 (421)
T PRK07591 126 SVALTAARELGFTTVA-CASTG-NLA-NSVAAHAARAGLD-SCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCS 201 (421)
T ss_pred HHHHHHHHHcCCCEEE-EeCCC-HHH-HHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHH
Confidence 3445667778888875 44443 443 4578888888875 556699866521 1122221222 2566655554
Q ss_pred HHHHHH-HHHHhhccCceEEEEecCCCccHHHHHhhhhcC---CcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcC--
Q 006961 251 QLISNV-CTDALSAEKYYYFIRLMGRRASHVALECTLQSH---PNMVILGEEVAASKLTLFDLTKQICDAVQARAEQD-- 324 (623)
Q Consensus 251 ~~I~ni-~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~---pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~g-- 324 (623)
+...+. ..-..+....-|++| | .+-++.|..-|.+ ||.+++|=-. -..+-.+...+++..+.|
T Consensus 202 ~~~~~~~~~~~~n~~~~p~~ie--G--~~Tia~Ei~eQl~~~~pD~iv~pvG~-------Gg~~~Gv~~g~kel~~~g~i 270 (421)
T PRK07591 202 ELANEHEGWGFVNINLRPYYAE--G--SKTLGYEVAEQLGWRLPDQVVAPLAS-------GSLLTKIDKGFQELIKVGLV 270 (421)
T ss_pred HHHHhcCCEEEecCCCCccccc--c--hHHHHHHHHHHcCCCCCCEEEEeCCc-------hHHHHHHHHHHHHHHhcCCc
Confidence 443321 000000001123333 2 2558899999874 8999998432 122445555555443221
Q ss_pred --C-CeEEEEEeCCCC
Q 006961 325 --K-NHGVILLPEGLI 337 (623)
Q Consensus 325 --k-~~gVIvVsEGl~ 337 (623)
+ -.-+.|=+||.-
T Consensus 271 ~~~~prii~Vq~~g~~ 286 (421)
T PRK07591 271 EDKPVRVFGAQAEGCS 286 (421)
T ss_pred cCCCceEEEEecCCCC
Confidence 2 255667778763
No 228
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=26.11 E-value=2.2e+02 Score=27.27 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=68.7
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCee-ecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTL-EVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 97 IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~-eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
|-++.-||+.. ...+-.++.....+.+++.+...+.=++..-+. .-..+....|...|| ||- -...|.+
T Consensus 3 VLL~n~G~P~~-----~~~v~~yL~~~~~d~~vi~~p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~----~SP-L~~~t~~ 72 (159)
T cd03411 3 VLLVNLGGPES-----LEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKIGG----GSP-LNEITRA 72 (159)
T ss_pred EEEEeCCCCCC-----HHHHHHHHHHHcCCCCcccCCHHHHHHHHHHhcccccHHHHHHHHHcCC----CCc-cHHHHHH
Confidence 55666788887 566777777767777887766554222222222 123456778998887 332 2123677
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
+.+++.+.|.+...+..|.+|=.=+.-.....-+.+.+.|+ -++|.+|
T Consensus 73 q~~~l~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~-~~iivlP 120 (159)
T cd03411 73 QAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGV-DRIVVLP 120 (159)
T ss_pred HHHHHHHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCC-CEEEEEE
Confidence 77888888877665666666521111112222234555664 6888899
No 229
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.80 E-value=8.5e+02 Score=26.58 Aligned_cols=106 Identities=8% Similarity=0.015 Sum_probs=62.2
Q ss_pred EEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec------ccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhc-
Q 006961 191 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT------LNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSA- 263 (623)
Q Consensus 191 ~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT------IDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~- 263 (623)
-+++-||.|-.-..+.|++++++++.++.++|+-.. ++-..+...+ ...||....+.+..+...+. .+...
T Consensus 8 i~i~aGgtsGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l-~v~G~~~~l~~~~~~~~~~~-~~~~~l 85 (385)
T TIGR00215 8 IALVAGEASGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEEL-SVMGLREVLGRLGRLLKIRK-EVVQLA 85 (385)
T ss_pred EEEEeCCccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHh-hhccHHHHHHHHHHHHHHHH-HHHHHH
Confidence 356667777766655999999988888999998642 1111222222 46788666666666555444 22221
Q ss_pred -cCceEEEEecCCCccHHHH--HhhhhcCCcEEEECCc
Q 006961 264 -EKYYYFIRLMGRRASHVAL--ECTLQSHPNMVILGEE 298 (623)
Q Consensus 264 -~k~~~fVevMGR~aG~LAL--~~aLat~pniilIpEe 298 (623)
...--+|=.+|--+..+.+ .+....-|-+.+||-+
T Consensus 86 ~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~ 123 (385)
T TIGR00215 86 KQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQ 123 (385)
T ss_pred HhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCc
Confidence 1124577788854435333 4444444777776643
No 230
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=25.77 E-value=1.3e+02 Score=34.31 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHH-HHHH-HHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTD-AAYL-AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 251 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~-A~~L-ae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~ 251 (623)
+..+.++-+.++ +-|+++|-||.|+--. ...+ ++|+++++ ++..|| |+|..-|+=.++.
T Consensus 351 ~~~~~~aW~~l~--~adGilvPGGFG~RGveG~i~Aak~ARen~--iP~LGi---------------CLGmQ~AvIEfaR 411 (585)
T KOG2387|consen 351 PRKYHAAWQKLK--SADGILVPGGFGDRGVEGKILAAKWARENK--IPFLGI---------------CLGMQLAVIEFAR 411 (585)
T ss_pred hhHHHHHHHHhc--cCCeEEeCCcccccchhHHHHHHHHHHhcC--CCeEee---------------ehhhhHHHHHHHH
Confidence 455677777666 7899999999998543 2333 45555544 566654 9999999999999
Q ss_pred HHHHHHHHHhhcc
Q 006961 252 LISNVCTDALSAE 264 (623)
Q Consensus 252 ~I~ni~~da~S~~ 264 (623)
.+-.+. ||.|..
T Consensus 412 nvLg~~-dAnStE 423 (585)
T KOG2387|consen 412 NVLGLK-DANSTE 423 (585)
T ss_pred HhhCCC-CCCccc
Confidence 988884 888864
No 231
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=25.73 E-value=1.4e+02 Score=28.99 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=33.0
Q ss_pred HHcCCCEEEEecCcchHHH---HHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHH
Q 006961 185 KNLNLDGLVIIGGVTSNTD---AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 251 (623)
Q Consensus 185 ~~~~Id~LviIGGdgS~~~---A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~ 251 (623)
...+.|++|+-||.++... ...+.+++.+++ ++|.|| |.|+...+..+.-
T Consensus 36 ~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI---------------C~G~Q~l~~~~Gg 88 (178)
T cd01744 36 LKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI---------------CLGHQLLALALGA 88 (178)
T ss_pred hhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE---------------CHHHHHHHHHcCC
Confidence 4458999999999876433 233444444443 677775 8888877766643
No 232
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=25.66 E-value=51 Score=32.03 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCC
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFV 236 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~i 236 (623)
.++.+++.++.. .+-++||||-.-+..+..+++ ++-+--|+++.+.|...+.+
T Consensus 79 s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~~~d-------~l~lT~I~~~~~~D~~fP~~ 131 (161)
T PF00186_consen 79 SLEEALELAKDK-DEEIFVIGGAEIYEQFLPYAD-------RLYLTRIDGDFEGDTFFPEI 131 (161)
T ss_dssp SHHHHHHHHTTS-ESEEEEEE-HHHHHHHHHGES-------EEEEEEESSESTTSEECSSC
T ss_pred CHHHHHHHhhcc-CCcEEEECCHHHHHHHHHhCC-------eEEEEEEcCccccceECCCC
Confidence 456677755555 899999999998887766443 46777889999999877754
No 233
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=25.66 E-value=45 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 180 ALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 180 i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
+.+.+.+...|.++++-||+-+.-+. +.++++|.++-|++.|....
T Consensus 87 ~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s 132 (146)
T PF01936_consen 87 ILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSAS 132 (146)
T ss_dssp HHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-
T ss_pred HHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCC
Confidence 34445445679999999998876654 45566788888888644443
No 234
>COG4683 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.59 E-value=43 Score=30.69 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=38.2
Q ss_pred ccCCCccCcCCCceeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecCCCCCc
Q 006961 29 QMFSFNANMQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPG 108 (623)
Q Consensus 29 ~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG 108 (623)
+=|+||.++.+. +.| +....++++=|.--|.|+--+.. -.+.|.||+++||.-.|
T Consensus 36 ~Gp~L~~Py~dk----Vn~--------Sr~knMkELR~q~~G~piRilfA-------------FDP~R~AIlL~~GnKag 90 (120)
T COG4683 36 EGPTLGRPYVDK----VNG--------SRHKNMKELRPQGQGTPIRILFA-------------FDPARQAILLLGGNKAG 90 (120)
T ss_pred hCCCCCCccccc----ccc--------cchhhHHHhCccCCCCeEEEEEe-------------cChHhHHHhhhccCccC
Confidence 458888887543 223 33567888888887866544433 34679999999998766
Q ss_pred h
Q 006961 109 G 109 (623)
Q Consensus 109 ~ 109 (623)
.
T Consensus 91 ~ 91 (120)
T COG4683 91 N 91 (120)
T ss_pred c
Confidence 3
No 235
>PRK11096 ansB L-asparaginase II; Provisional
Probab=25.45 E-value=1.5e+02 Score=32.55 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHH--cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 006961 173 TTEQVNAALTACKN--LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 222 (623)
Q Consensus 173 t~e~~~~i~~~l~~--~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIG 222 (623)
+++++.++.+.+++ .+.|++||.-|-|||...+.+-.++. +...+||-
T Consensus 83 t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~Ls~~~--~~~kPVVl 132 (347)
T PRK11096 83 NDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTV--KCDKPVVL 132 (347)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHHHHhc--cCCCCEEE
Confidence 56777777777766 57999999999999998665544443 33445553
No 236
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.40 E-value=5.3e+02 Score=25.27 Aligned_cols=55 Identities=27% Similarity=0.297 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 178 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
.+.++.+...++|++++.+.+.+-. . .+.+.+.| ++||.+ |.|.....+ .++|+|
T Consensus 44 ~~~i~~~~~~~vdgiii~~~~~~~~---~-~~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 98 (266)
T cd06278 44 DAALRQLLQYRVDGVIVTSGTLSSE---L-AEECRRNG--IPVVLI----NRYVDGPGV-DAVCSD 98 (266)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHH---H-HHHHhhcC--CCEEEE----CCccCCCCC-CEEEEC
Confidence 4566778889999999988764321 1 23344444 688776 444432222 456666
No 237
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=25.32 E-value=9.1e+02 Score=26.35 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHH-HHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHH
Q 006961 178 NAALTACKNLNLDGLVIIGGVTSNTD-AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNV 256 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIGGdgS~~~-A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni 256 (623)
+++-+.+++++.+-+++|.+...... ...+.+.+++.|.++.++.+| ++|.+.-++++.+.+..+..
T Consensus 12 ~~l~~~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~----------~~e~~k~~~~v~~~~~~~~~-- 79 (355)
T cd08197 12 DSVLGYLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVP----------SGEEHKTLSTLSDLVERALA-- 79 (355)
T ss_pred HHHHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeC----------CCCCCCCHHHHHHHHHHHHH--
Confidence 34455567777666666666554433 345777777777665555444 22345555555554443332
Q ss_pred HHHHhhccCceEEEEecCCCccHHHHHhhhh--cCCcEEEECC
Q 006961 257 CTDALSAEKYYYFIRLMGRRASHVALECTLQ--SHPNMVILGE 297 (623)
Q Consensus 257 ~~da~S~~k~~~fVevMGR~aG~LAL~~aLa--t~pniilIpE 297 (623)
.. ..|.-.+|=+=|.+.+.+|=.+|.. .+..++.||=
T Consensus 80 ---~~-~dr~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 80 ---LG-ATRRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred ---cC-CCCCcEEEEECCcHHHHHHHHHHHHhccCCCEEEecC
Confidence 22 2334579999999999999555432 4678888885
No 238
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.16 E-value=1.2e+02 Score=28.07 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 178 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
-.+++...+.++|.+|++.||+-+.-+. +.++++|.++-|++.+
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccC
Confidence 3456666777999999999999777654 3455678878888777
No 239
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=25.13 E-value=2e+02 Score=30.42 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCEEEEec-----CcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 176 QVNAALTACKNLNLDGLVIIG-----GVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIG-----GdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+-+.++..+-..|.|-.+.|= |.++..+|..|++..++.+..+-+.|- -|||+|-.
T Consensus 67 ~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~-qa~D~~t~ 127 (260)
T COG2086 67 QAEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGK-QAIDGDTG 127 (260)
T ss_pred hhHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEec-ccccCCcc
Confidence 445667778889999999887 899999999999999988877666666 57788863
No 240
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.05 E-value=1.8e+02 Score=30.44 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
..++-++.|++.++|++++. |=....+..+.+.++++|+..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46678899999999999995 66788888888999888875555555644
No 241
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=24.94 E-value=6.6e+02 Score=24.58 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=50.1
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHH
Q 006961 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 176 (623)
Q Consensus 97 IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~ 176 (623)
||||..--..|-...++.|+-+.++.. +.++ .+.... .+++.
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~--g~~v---------------------------------~~~~~~---~~~~~ 43 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKEL--GYEL---------------------------------TVLDAQ---NDAAK 43 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHc--CceE---------------------------------EecCCC---CCHHH
Confidence 677777677888888888888877632 1221 111111 13344
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
..++++.+...++|++++.+ .++......|.+ +.+++ ++||.+
T Consensus 44 ~~~~~~~~~~~~~dgii~~~-~~~~~~~~~l~~-l~~~~--ipvv~~ 86 (268)
T cd06323 44 QLNDIEDLITRGVDAIIINP-TDSDAVVPAVKA-ANEAG--IPVFTI 86 (268)
T ss_pred HHHHHHHHHHcCCCEEEEcC-CChHHHHHHHHH-HHHCC--CcEEEE
Confidence 55677778888999999865 443322223333 33344 677766
No 242
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.82 E-value=3.2e+02 Score=29.02 Aligned_cols=115 Identities=9% Similarity=0.035 Sum_probs=54.3
Q ss_pred CChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccC
Q 006961 56 ADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGG 135 (623)
Q Consensus 56 ~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G 135 (623)
.+.+.+++.|..+...-.+.+.- .....++||+|+.||+ ..-+.+.| ++.+...-+.+|.++.--
T Consensus 61 ~~~~~L~~~L~~l~~~l~l~i~l----------~~~~~~~ri~vl~Sg~-gsnl~al~----~~~~~~~~~~~i~~visn 125 (286)
T PRK06027 61 FNLETLRADFAALAEEFEMDWRL----------LDSAERKRVVILVSKE-DHCLGDLL----WRWRSGELPVEIAAVISN 125 (286)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEE----------cccccCcEEEEEEcCC-CCCHHHHH----HHHHcCCCCcEEEEEEEc
Confidence 34567777776554332222211 1224568999999999 33444444 433322223555554421
Q ss_pred hhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHH-HHHHHHHHHcCCCEEEEecCcch
Q 006961 136 SEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQV-NAALTACKNLNLDGLVIIGGVTS 200 (623)
Q Consensus 136 ~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~-~~i~~~l~~~~Id~LviIGGdgS 200 (623)
.. .+..+...=|-...--.+.+ .+.+.+ .++.+.+++++.|.+|+.| ..-
T Consensus 126 ~~-------------~~~~lA~~~gIp~~~~~~~~-~~~~~~~~~~~~~l~~~~~Dlivlag-y~~ 176 (286)
T PRK06027 126 HD-------------DLRSLVERFGIPFHHVPVTK-ETKAEAEARLLELIDEYQPDLVVLAR-YMQ 176 (286)
T ss_pred Ch-------------hHHHHHHHhCCCEEEeccCc-cccchhHHHHHHHHHHhCCCEEEEec-chh
Confidence 11 22222222232222111111 122223 3467889999999655544 443
No 243
>PRK12342 hypothetical protein; Provisional
Probab=24.45 E-value=1.8e+02 Score=30.49 Aligned_cols=52 Identities=10% Similarity=-0.036 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCEEEEe-----cCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 180 ALTACKNLNLDGLVII-----GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 180 i~~~l~~~~Id~LviI-----GGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
.++.+-..|.|-.|.| +|.|+..+|..|+.++++.++.+-+.|- .|+|+|-.
T Consensus 69 l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~-~s~D~~tg 125 (254)
T PRK12342 69 VRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGE-GSGDLYAQ 125 (254)
T ss_pred HHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcC-CcccCCCC
Confidence 3455677899998888 4679999999999999988888877774 78888863
No 244
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.33 E-value=2.1e+02 Score=27.28 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=37.1
Q ss_pred ecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 272 LMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 272 vMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
+-|...=-+++..||+..|+++++=|- ...++... .+.+.+.+++..++ +..+|+++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEP--t~~LD~~~-~~~l~~~l~~~~~~--g~tiii~t 152 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEP--TSGLDPES-RREFWELLRELKKE--GKTILLSS 152 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCC--ccCCCHHH-HHHHHHHHHHHHHC--CCEEEEEC
Confidence 333333458899999999999999983 33355333 56677777765443 45566655
No 245
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=24.17 E-value=7.3e+02 Score=27.27 Aligned_cols=139 Identities=7% Similarity=-0.010 Sum_probs=73.3
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEc--cChhh---hhcCCeeecCHhHHhchhhcCCcccccCcCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL--GGSEG---LFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~--~G~~G---L~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~ 169 (623)
.+.=|+.+|.++|..+ ..+.+.+. ..|..|.+-- .|.+. .++..-=.+ ....+.|.+.+-. .++..
T Consensus 232 ~~~RIl~tG~~~~~~~---~k~~~~iE--~~G~~VV~dd~c~g~r~~~~~v~e~~dp~-~aLA~~Yl~~~~~---c~~~~ 302 (380)
T TIGR02263 232 DNCRVIICGMFCEQPP---LNLIKSIE--LSGCYIVDDDFIIVHRFENNDVALAGDPL-QNLALAFLHDSIS---TAAKY 302 (380)
T ss_pred CCCEEEEECcCCCCch---HHHHHHHH--HCCCEEEEecCCccchhhhccCCCCCCHH-HHHHHHHhhCCCC---Ccccc
Confidence 4566888897776664 44444333 2366777653 23332 232110000 1234445322110 01112
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEec--CcchHHH-HHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcC-hhhH
Q 006961 170 QIRTTEQVNAALTACKNLNLDGLVIIG--GVTSNTD-AAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVG-FDTI 245 (623)
Q Consensus 170 k~~t~e~~~~i~~~l~~~~Id~LviIG--GdgS~~~-A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~G-FdTA 245 (623)
....+.-.+.+.+.++++++||+|..- |-++... ...|.+++++.| |+++.| |... +. ..++ +-|+
T Consensus 303 ~~~~~~R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~G--IP~L~i------d~~~-~~-~~~~q~~t~ 372 (380)
T TIGR02263 303 DDDEADKGKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHG--IPQIAF------KYAE-NS-GQMQPIREQ 372 (380)
T ss_pred CCChhhHHHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCC--CCEEEE------EecC-cc-chHHHHHHH
Confidence 222233667888999999999999863 4444444 556678886665 788877 3322 10 1222 4567
Q ss_pred HHHHHHH
Q 006961 246 CKVNSQL 252 (623)
Q Consensus 246 ~~~~s~~ 252 (623)
+++++|.
T Consensus 373 ~~~f~e~ 379 (380)
T TIGR02263 373 AGTFADS 379 (380)
T ss_pred HHHHHhh
Confidence 7766665
No 246
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=24.14 E-value=8.2e+02 Score=25.36 Aligned_cols=88 Identities=24% Similarity=0.266 Sum_probs=55.6
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+...||+++..-..|-.+.++.|+.+++... +..++ +..+. .
T Consensus 63 ~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~ 104 (342)
T PRK10014 63 QSGVIGLIVRDLSAPFYAELTAGLTEALEAQ--GRMVF---------------------------------LLQGG---K 104 (342)
T ss_pred CCCEEEEEeCCCccchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 4468999998878888888999998877632 22221 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+.+.....++.+...++|++++.+.+.... .+.+.+.+.+ ++||.+
T Consensus 105 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~--iPvV~~ 150 (342)
T PRK10014 105 DGEQLAQRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKG--IPVVFA 150 (342)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcC--CCEEEE
Confidence 234455678888899999999998765322 1223334444 677754
No 247
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=24.07 E-value=3.4e+02 Score=26.84 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=49.6
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHH
Q 006961 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 176 (623)
Q Consensus 97 IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~ 176 (623)
|||++..-..|=.+.++.|+-+++... +.+++ +..+. .+.+.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQ--GYNLI---------------------------------LCNTE---GDPER 43 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---CChHH
Confidence 778877666677777777777766532 23331 00000 12344
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
..+.++.+...++|++++.+.+........+. ... +++||.+
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~---~~~--~ipvV~i 85 (269)
T cd06275 44 QRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLE---RYR--HIPMVVM 85 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCChHHHHHHH---hcC--CCCEEEE
Confidence 55678889999999999999775532222221 112 4788754
No 248
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.90 E-value=2.8e+02 Score=25.20 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=31.1
Q ss_pred HHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCC-CEEEEecCcchHHH
Q 006961 151 ILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNL-DGLVIIGGVTSNTD 203 (623)
Q Consensus 151 ~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~I-d~LviIGGdgS~~~ 203 (623)
.++.....+- ++++-|-..-...+..+..++.|++.+. +-.+++||......
T Consensus 42 ~~~~a~~~~~-d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 42 IVEAAIQEDV-DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHcCC-CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 3444444444 4555444333456677777888888766 56678888765433
No 249
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.52 E-value=3e+02 Score=34.76 Aligned_cols=108 Identities=15% Similarity=0.056 Sum_probs=60.4
Q ss_pred CCceEEEEEecCCCCCc----hHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCc
Q 006961 92 HPAIRVGIVFCGRQSPG----GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRT 167 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG----~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~ 167 (623)
...++|.|+-||+..-| .-..-..+.++++ ..|.+|+.+..-+.....+. ...+ .
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~--e~G~~vi~v~~np~~~~~d~------~~ad-------------~ 63 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALK--EEGYQVVLVNPNPATIMTDP------APAD-------------T 63 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHH--HcCCEEEEEeCCcchhhcCc------ccCC-------------e
Confidence 34579999998864333 2222234445555 34789998864432221111 0000 0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEE-ecCcchHHHHHHHHH--HHHhcCCCCeEEEee
Q 006961 168 KDQIRTTEQVNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAE--TFAEAKCPTKVVGVP 224 (623)
Q Consensus 168 R~k~~t~e~~~~i~~~l~~~~Id~Lvi-IGGdgS~~~A~~Lae--~~~~~g~~i~VIGVP 224 (623)
.. + .+-..+.+.+.|++.++|+++. +||......|..|++ .+.+.| ++++|.+
T Consensus 64 ~y-~-ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~g--v~l~g~~ 119 (1068)
T PRK12815 64 VY-F-EPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYG--VELLGTN 119 (1068)
T ss_pred eE-E-CCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCC--CEEECCC
Confidence 00 0 1112355677789999999985 588877777776764 344444 6777754
No 250
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=23.43 E-value=86 Score=25.27 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCcchHHHHH
Q 006961 177 VNAALTACKNLNLDGLVIIGGVTSNTDAA 205 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~LviIGGdgS~~~A~ 205 (623)
..++.+.+++++|| +..||+.|+..|+
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 44678999999999 6899999987776
No 251
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.39 E-value=2.3e+02 Score=27.71 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=38.1
Q ss_pred EecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 006961 271 RLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334 (623)
Q Consensus 271 evMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsE 334 (623)
++-|...=-+++..|+..+|+++++=| + ...++... .+.+.+.+++..++ +..+|+++-
T Consensus 129 ~LS~G~~qrl~la~al~~~p~llllDE-P-t~~LD~~~-~~~l~~~l~~~~~~--~~tiii~sh 187 (204)
T PRK13538 129 QLSAGQQRRVALARLWLTRAPLWILDE-P-FTAIDKQG-VARLEALLAQHAEQ--GGMVILTTH 187 (204)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeC-C-CccCCHHH-HHHHHHHHHHHHHC--CCEEEEEec
Confidence 344444456899999999999999988 3 34455443 56666777654332 345666653
No 252
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=23.28 E-value=8.2e+02 Score=25.09 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=45.6
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+...||+|+..-..|-...++.|+-+.+.+. +.+++-+ ....
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~~--- 96 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFER--GYSLVLC---------------------------------NTEG--- 96 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHc--CCEEEEE---------------------------------eCCC---
Confidence 3468999987666777888888888777632 2222110 0101
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcch
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTS 200 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS 200 (623)
+.+...+.++.+...++||+|+.+.+.+
T Consensus 97 ~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 97 DEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 2233446778888899999999987654
No 253
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.19 E-value=4.5e+02 Score=27.87 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCCEEEEec
Q 006961 178 NAALTACKNLNLDGLVIIG 196 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIG 196 (623)
.++++.+++++.|.+|+.|
T Consensus 150 ~~~~~~l~~~~~Dlivlag 168 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAK 168 (280)
T ss_pred HHHHHHHHHhCCCEEEEeC
Confidence 4567889999999666544
No 254
>PLN02735 carbamoyl-phosphate synthase
Probab=22.87 E-value=4.7e+02 Score=33.20 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCcchHHHHHHHHHHHHhcC-------CCCeEEEe
Q 006961 177 VNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAETFAEAK-------CPTKVVGV 223 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~Lvi-IGGdgS~~~A~~Lae~~~~~g-------~~i~VIGV 223 (623)
.+.+++.|++.++|++++ +||+-.+.-|..+.+.+.+++ .++.++|-
T Consensus 638 ~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~ 692 (1102)
T PLN02735 638 VEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGT 692 (1102)
T ss_pred HHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECC
Confidence 677899999999999996 788888888888888766543 13667763
No 255
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.84 E-value=4.3e+02 Score=26.08 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+.....++.+...++|++++++.+.+.... +.+++++ ++||.+
T Consensus 42 ~~~~~~~~~l~~~~vdgiii~~~~~~~~~~----~~l~~~~--iPvv~~ 84 (268)
T cd06273 42 DREYAQARKLLERGVDGLALIGLDHSPALL----DLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 334456777888899999999876543222 2333444 788775
No 256
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.72 E-value=4.1e+02 Score=21.38 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=20.2
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCeEEE
Q 006961 196 GGVTSNTDAAYLAETFAEAKCPTKVVG 222 (623)
Q Consensus 196 GGdgS~~~A~~Lae~~~~~g~~i~VIG 222 (623)
+|.|.-+.+..|+..+++.|.++-++-
T Consensus 8 ~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 8 GGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 567888889999999988776544443
No 257
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=22.57 E-value=2.5e+02 Score=30.27 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 173 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 173 t~e~~~~i~~~l~~~--~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+..+. ..+||-.
T Consensus 61 t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~~--~kPVVlT 111 (323)
T cd00411 61 TDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYFLSLTLEN--DKPVVLT 111 (323)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhcC--CCCEEEE
Confidence 567777776666554 699999999999999866554454443 3455544
No 258
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=22.43 E-value=1.7e+02 Score=32.34 Aligned_cols=38 Identities=37% Similarity=0.393 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET 210 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~ 210 (623)
|...+.++++..++-+.|.+|-|||--++.+|...+-+
T Consensus 112 tv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~ 149 (465)
T KOG3857|consen 112 TVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALL 149 (465)
T ss_pred chhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHh
Confidence 45668889999999999999999999888887766544
No 259
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.36 E-value=1.8e+02 Score=26.52 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=50.6
Q ss_pred cCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcch-HHHHHHHHHHHHhcCC-CC
Q 006961 141 AQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS-NTDAAYLAETFAEAKC-PT 218 (623)
Q Consensus 141 ~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS-~~~A~~Lae~~~~~g~-~i 218 (623)
.++.-++-...+..+...+|+..+-.+-.-+ .+.+++..++.+-|.+++-+-+++ ...+..+.+.+++.+. ++
T Consensus 8 ~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp-----~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i 82 (122)
T cd02071 8 GLDGHDRGAKVIARALRDAGFEVIYTGLRQT-----PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDI 82 (122)
T ss_pred CCChhHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCC
Confidence 3444455556778888899987655443322 235778888999999998887764 4446777888888766 44
Q ss_pred eE
Q 006961 219 KV 220 (623)
Q Consensus 219 ~V 220 (623)
.+
T Consensus 83 ~i 84 (122)
T cd02071 83 LV 84 (122)
T ss_pred EE
Confidence 43
No 260
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=22.24 E-value=1.5e+02 Score=30.84 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=62.8
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
..||||+.--.-|=--.++.|+-+.+++. |..+ ++..+.. +
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~--Gy~l---------------------------------~l~~t~~---~- 42 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREH--GYQL---------------------------------LLCNTGD---D- 42 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHT--TCEE---------------------------------EEEEETT---T-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHc--CCEE---------------------------------EEecCCC---c-
Confidence 46888888777777778888888777632 2222 2222221 1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
++.++.++.|.+.++||+|+.+-..+...-..+.+ . +++||-+=.+.+++.. . .|+..|
T Consensus 43 ~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~--~--~~V~~D 101 (279)
T PF00532_consen 43 EEKEEYIELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEG--V--PSVYID 101 (279)
T ss_dssp HHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCT--S--CEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCccc--C--CEEEEc
Confidence 22338899999999999999976666343333332 2 4899988777776611 1 356666
No 261
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.07 E-value=1.1e+02 Score=32.63 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
.+++.++..|-+ .+|.++||||-.|..+ .+|++-+++.+.++-.|-=+.=||
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT-~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNT-TRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchH-HHHHHHHHHhCCCEEEECChHHCC
Confidence 456666666644 6999999999998644 578898888775555554455454
No 262
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.05 E-value=2.5e+02 Score=26.42 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=35.1
Q ss_pred hHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCC-CEEEEecCcc
Q 006961 150 EILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNL-DGLVIIGGVT 199 (623)
Q Consensus 150 ~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~I-d~LviIGGdg 199 (623)
+.++......- +++|-|----.+.+.+++.++.|++.++ +..|++||.-
T Consensus 41 ~~v~aa~~~~a-diVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 41 EFIDAAIETDA-DAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHcCC-CEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 34555544433 6777555444466788999999999999 8889999984
No 263
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=21.93 E-value=8.8e+02 Score=24.96 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=57.7
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
...||+++..-..|-...++.++-+.+.. .+..++ +..+. .+
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~--~gy~~~---------------------------------i~~~~---~~ 101 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCRE--AGYQLL---------------------------------IACSD---DN 101 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHH--CCCEEE---------------------------------EEeCC---CC
Confidence 46899998766667777777787776653 222222 11111 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
++...+.++.+...++||+|+.+.+..... .+ +.+.+.+ ++||.+ |.+.....+ .+++.|-
T Consensus 102 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~--~~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~dn 162 (327)
T TIGR02417 102 PDQEKVVIENLLARQVDALIVASCMPPEDA--YY-QKLQNEG--LPVVAL----DRSLDDEHF-CSVISDD 162 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCChH--HH-HHHHhcC--CCEEEE----ccccCCCCC-CEEEeCc
Confidence 333456778888999999999886542211 12 2333344 677644 444433221 3566554
No 264
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=21.77 E-value=4.2e+02 Score=27.27 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=41.5
Q ss_pred hhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 006961 155 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 222 (623)
Q Consensus 155 ~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIG 222 (623)
++..|. .+..+.+.... ..++...+..+++.+.+.+++.|. +. .+..+.+.+++.|+..++++
T Consensus 159 ~~~~g~-~v~~~~~~~~~-~~d~~~~l~~i~~~~~~~vi~~~~-~~--~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 159 LKAAGG-KVVAREGTTDG-ATDFSAILTKIKAANPDAVFFGGY-YP--EAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred HHHcCC-EEEEEecCCCC-CccHHHHHHHHHhcCCCEEEEcCc-ch--hHHHHHHHHHHcCCCCcEEe
Confidence 333455 47766555543 456888888899999998876653 32 34446667777887666665
No 265
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.61 E-value=4e+02 Score=28.41 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=42.0
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+++||+|+.||. ++| ...++++.+...-..++.++..--.+ +..+...=|-...--.+.+
T Consensus 91 ~~~~kiavl~Sg~----g~n-l~al~~~~~~~~l~~~i~~visn~~~-------------~~~~A~~~gIp~~~~~~~~- 151 (289)
T PRK13010 91 GQRPKVVIMVSKF----DHC-LNDLLYRWRMGELDMDIVGIISNHPD-------------LQPLAVQHDIPFHHLPVTP- 151 (289)
T ss_pred CCCeEEEEEEeCC----Ccc-HHHHHHHHHCCCCCcEEEEEEECChh-------------HHHHHHHcCCCEEEeCCCc-
Confidence 3467999999997 222 33444444322223566655532221 1222222232222112222
Q ss_pred CChHH-HHHHHHHHHHcCCCEEEEec
Q 006961 172 RTTEQ-VNAALTACKNLNLDGLVIIG 196 (623)
Q Consensus 172 ~t~e~-~~~i~~~l~~~~Id~LviIG 196 (623)
.+.+. -.++.+.|++++.|.+|+.|
T Consensus 152 ~~~~~~~~~~~~~l~~~~~Dlivlag 177 (289)
T PRK13010 152 DTKAQQEAQILDLIETSGAELVVLAR 177 (289)
T ss_pred ccccchHHHHHHHHHHhCCCEEEEeh
Confidence 22222 23578889999999665544
No 266
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.49 E-value=6.2e+02 Score=27.24 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=69.2
Q ss_pred ceEEEEEecCCCCCch-HHHHHHHHHHHHhcCCCCEEEEEccChhhhh--cCCeeecCHhHHhchhhcCCcccccCcCC-
Q 006961 94 AIRVGIVFCGRQSPGG-HNVVWGLYDALKLHNPKSTLLGFLGGSEGLF--AQKTLEVTKEILSTYKNQGGYDMLGRTKD- 169 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~-nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~--~~~~~eLt~~~v~~~~n~GG~~~lGS~R~- 169 (623)
..+|.++ ||.-|.. ...+..+++.+++..++.++-++- ...++ ....-.++++.++.++..|=..+.+++..
T Consensus 87 ~~~i~l~--gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t--~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~ 162 (343)
T TIGR03551 87 ATEVCIQ--GGIHPDLDGDFYLDILRAVKEEVPGMHIHAFS--PMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEI 162 (343)
T ss_pred CCEEEEE--eCCCCCCCHHHHHHHHHHHHHHCCCceEEecC--HHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhh
Confidence 3455555 6666754 345578888888766666665542 11110 01111245666777776653224433321
Q ss_pred -------CC---C-ChHHHHHHHHHHHHcCCCE--EEEecCcchHHHHHHHHHHHHhcC
Q 006961 170 -------QI---R-TTEQVNAALTACKNLNLDG--LVIIGGVTSNTDAAYLAETFAEAK 215 (623)
Q Consensus 170 -------k~---~-t~e~~~~i~~~l~~~~Id~--LviIGGdgS~~~A~~Lae~~~~~g 215 (623)
++ + +.++.-++++.++++||.. -+++|=.+|..........+++.+
T Consensus 163 ~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~ 221 (343)
T TIGR03551 163 LDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ 221 (343)
T ss_pred cCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh
Confidence 11 1 4567778999999987754 778894478877777777776554
No 267
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=21.46 E-value=7.7e+02 Score=24.08 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=52.5
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
.|||++..-..|-...++.|+.+.++.. +.++.-+. +. .+.+
T Consensus 1 ~igvv~~~~~~~~~~~~~~~i~~~~~~~--g~~~~~~~---------------------------------~~---~~~~ 42 (266)
T cd06282 1 TVGVVLPSLANPVFAECVQGIQEEARAA--GYSLLLAT---------------------------------TD---YDAE 42 (266)
T ss_pred CeEEEeCCCCcchHHHHHHHHHHHHHHC--CCEEEEee---------------------------------CC---CCHH
Confidence 3788887777888899999998887642 33333211 01 1123
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
...++++.+...++|++|+..++.... . ..+.+.++| ++||.+
T Consensus 43 ~~~~~~~~l~~~~vdgiii~~~~~~~~--~-~~~~~~~~~--ipvV~~ 85 (266)
T cd06282 43 READAVETLLRQRVDGLILTVADAATS--P-ALDLLDAER--VPYVLA 85 (266)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCch--H-HHHHHhhCC--CCEEEE
Confidence 344667778889999999987765322 1 223444455 666655
No 268
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=21.41 E-value=5.5e+02 Score=25.07 Aligned_cols=112 Identities=9% Similarity=0.113 Sum_probs=58.6
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCccccc------
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG------ 165 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lG------ 165 (623)
+......|++.|++..|=..++..+...+. .++++-++.+.+..++..-= .+..
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~-------------------~~~~v~i~~D~~r~~~p~~~-~~~~~~~~~~ 70 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG-------------------GGGIVVIDADEFRQFHPDYD-ELLKADPDEA 70 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT--------------------TT-SEEE-GGGGGGGSTTHH-HHHHHHCCCT
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc-------------------CCCeEEEehHHHHHhccchh-hhhhhhhhhh
Confidence 446788999999999999988888865431 33445555555444431100 0000
Q ss_pred CcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 166 RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 166 S~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
+...........+++++.+.+.+.+-++ =|--.+...+..+.+.+++.|+.+.|+.|-
T Consensus 71 ~~~~~~~a~~~~~~~~~~a~~~~~nii~-E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~ 128 (199)
T PF06414_consen 71 SELTQKEASRLAEKLIEYAIENRYNIIF-EGTLSNPSKLRKLIREAKAAGYKVELYYVA 128 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT--EEE-E--TTSSHHHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEE-ecCCCChhHHHHHHHHHHcCCceEEEEEEE
Confidence 0000001123456677888888887554 333333344555778888899988887764
No 269
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.36 E-value=8.6e+02 Score=25.11 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=44.0
Q ss_pred CHhHHhchhhcCCcccccCcCC-----CC-----CChHHHHHHHHHHHHcCCCE-EEEecCcchHHHHH-HH---HHHHH
Q 006961 148 TKEILSTYKNQGGYDMLGRTKD-----QI-----RTTEQVNAALTACKNLNLDG-LVIIGGVTSNTDAA-YL---AETFA 212 (623)
Q Consensus 148 t~~~v~~~~n~GG~~~lGS~R~-----k~-----~t~e~~~~i~~~l~~~~Id~-LviIGGdgS~~~A~-~L---ae~~~ 212 (623)
+.+.+..+.+.|. .++--.|. .+ ++.+....+.+.|.+.|-.- +.+|||+.+...+. ++ -+.++
T Consensus 68 ~~~~l~~~~~~~i-PvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~ 146 (279)
T PF00532_consen 68 DDEELRRLIKSGI-PVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALK 146 (279)
T ss_dssp TCHHHHHHHHTTS-EEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCC-CEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHH
Confidence 3456777777743 44433333 12 13455667888899999988 88888876655433 33 34555
Q ss_pred hcCCCCeEEEe
Q 006961 213 EAKCPTKVVGV 223 (623)
Q Consensus 213 ~~g~~i~VIGV 223 (623)
+.|..+.-.-|
T Consensus 147 ~~Gl~~~~~~i 157 (279)
T PF00532_consen 147 EAGLPIDEEWI 157 (279)
T ss_dssp HTTSCEEEEEE
T ss_pred HcCCCCCcccc
Confidence 66754444333
No 270
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=21.36 E-value=84 Score=28.56 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+.+++++.+++.++++ +.||-|-+.-...|++.+.+.| +.+||-
T Consensus 62 ~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~g--i~fiGp 105 (110)
T PF00289_consen 62 NIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAG--IIFIGP 105 (110)
T ss_dssp SHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred cHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCC--CEEECc
Confidence 4567888889987666 6699999999999999998777 577663
No 271
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=21.26 E-value=1.2e+02 Score=29.91 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 182 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 182 ~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
+.+++++.|++|+-||-|+-..+....+.++....+++|.|| |+|+..-+..+
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI---------------ClG~Q~la~a~ 89 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV---------------CLGHQAMAQAF 89 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE---------------CHHHHHHHHHc
Confidence 345567899999999999987764433333322234677775 89987665554
No 272
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=21.24 E-value=3.4e+02 Score=27.35 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=27.7
Q ss_pred hcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCc
Q 006961 140 FAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGV 198 (623)
Q Consensus 140 ~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGd 198 (623)
-...+.-+....++.+...||..++=.. . .+++.++.. ++ .+|+|++-||.
T Consensus 18 ~~~~~~~i~~~Yv~~i~~aG~~pv~ip~-~--~~~~~~~~~---l~--~idGlll~GG~ 68 (217)
T PF07722_consen 18 PGYPRSYIAASYVKAIEAAGGRPVPIPY-D--ADDEELDEL---LD--RIDGLLLPGGG 68 (217)
T ss_dssp HHC-SEEEEHHHHHHHHHTT-EEEEE-S-S----HHHHHHH---HH--CSSEEEE---S
T ss_pred CchhHHHHhHHHHHHHHHcCCEEEEEcc-C--CCHHHHHHH---Hh--hcCEEEEcCCc
Confidence 3445556778889999999996443111 1 133443333 33 79999999999
No 273
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.15 E-value=3.5e+02 Score=25.67 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=41.4
Q ss_pred cCH-hHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCC-CEEEEecCcchHHH--HHHHHHHHHhcC
Q 006961 147 VTK-EILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNL-DGLVIIGGVTSNTD--AAYLAETFAEAK 215 (623)
Q Consensus 147 Lt~-~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~I-d~LviIGGdgS~~~--A~~Lae~~~~~g 215 (623)
.+. +.++.....+- +++|-|----.+.+.+++.++.|++.++ +-.+++||.-.... .....+.+++.|
T Consensus 39 v~~e~~v~aa~~~~a-diVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~G 110 (134)
T TIGR01501 39 SPQEEFIKAAIETKA-DAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMG 110 (134)
T ss_pred CCHHHHHHHHHHcCC-CEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcC
Confidence 443 45555555544 6777554333466788999999999999 45577899654322 222233455556
No 274
>PRK10481 hypothetical protein; Provisional
Probab=21.14 E-value=9.2e+02 Score=24.86 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=85.2
Q ss_pred CChhHHhhhCCCcCC-CCceeEecCccCC--------CCccc---ccCCCceEEEEEecCCCCCchHH----------HH
Q 006961 56 ADTHSISRSFPHTYG-QPLAHFLRATAKV--------PDAQI---ITEHPAIRVGIVFCGRQSPGGHN----------VV 113 (623)
Q Consensus 56 ~~~~~i~~~fp~~~~-~~~~~~~~~~~~~--------~~~~~---~~~~~~~~IgIv~sGG~aPG~nn----------VI 113 (623)
-+.++|.+.|+-.-| ...++-.+.+..+ |+-+. .-+.....+-|+.|=|+-||+++ .|
T Consensus 40 l~~~ei~~~~ap~~~~~~lvtrL~dG~~v~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i 119 (224)
T PRK10481 40 LSREEIMAAYAPEAGEDVLVTRLNDGQQVHVSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRIL 119 (224)
T ss_pred CCHHHHHHhcCCCCCCceeEEEecCCCEEEEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhH
Confidence 457888666655545 4566666665321 00000 11223357778888888888776 23
Q ss_pred HHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccc--cCcCCCCCChHHHHHHHHHHHHcCCCE
Q 006961 114 WGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDML--GRTKDQIRTTEQVNAALTACKNLNLDG 191 (623)
Q Consensus 114 ~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~l--GS~R~k~~t~e~~~~i~~~l~~~~Id~ 191 (623)
.+++.++ ..+ +=+|+.-=+ .+......+.|+.. |+... +.+.. ..+++.+.++.+.|+..+.|.
T Consensus 120 ~~lv~Al---~~g-~riGVitP~--------~~qi~~~~~kw~~~-G~~v~~~~aspy-~~~~~~l~~aa~~L~~~gaD~ 185 (224)
T PRK10481 120 PPLVAAI---VGG-HQVGVIVPV--------EEQLAQQAQKWQVL-QKPPVFALASPY-HGSEEELIDAGKELLDQGADV 185 (224)
T ss_pred HHHHHHh---cCC-CeEEEEEeC--------HHHHHHHHHHHHhc-CCceeEeecCCC-CCCHHHHHHHHHHhhcCCCCE
Confidence 4444432 223 334444211 12234466778888 66532 22222 356677888889999999999
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEE
Q 006961 192 LVIIGGVTSNTDAAYLAETFAEAKCPTKVV 221 (623)
Q Consensus 192 LviIGGdgS~~~A~~Lae~~~~~g~~i~VI 221 (623)
+|.-+.+=+...+..|.+.+ +++||
T Consensus 186 Ivl~C~G~~~~~~~~le~~l-----g~PVI 210 (224)
T PRK10481 186 IVLDCLGYHQRHRDLLQKAL-----DVPVL 210 (224)
T ss_pred EEEeCCCcCHHHHHHHHHHH-----CcCEE
Confidence 99888877776666665543 46776
No 275
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.94 E-value=2.4e+02 Score=28.06 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+...+.+.+...++|++++.+.+.. . . .+.+.+.+ ++||.+ |.+.+
T Consensus 46 ~~~~~~~~l~~~~vdgiii~~~~~~-~---~-~~~l~~~~--ipvV~~----~~~~~ 91 (268)
T cd06277 46 EEFELPSFLEDGKVDGIILLGGIST-E---Y-IKEIKELG--IPFVLV----DHYIP 91 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCh-H---H-HHHHhhcC--CCEEEE----ccCCC
Confidence 3445677788899999999986543 1 1 23344444 788854 55543
No 276
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=20.89 E-value=8e+02 Score=27.46 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCC---CCcChhhHHH
Q 006961 174 TEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVE---TNVGFDTICK 247 (623)
Q Consensus 174 ~e~~~~i~~~l~~~---~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie---~S~GFdTA~~ 247 (623)
.+-+.++......+ ++..+-|-|-+|-=|++..|+.-+.+.| ..++...|+.|.+.+..++ .|+.--|..+
T Consensus 77 ~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g---~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~ 153 (460)
T PRK00139 77 RKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLG---EKTALIGTLGNGIGGELIPSGLTTPDALDLQR 153 (460)
T ss_pred HHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcC---CCEEEECCcccccCCeecccCCCCcCHHHHHH
Confidence 34445555444433 6677788888898888999999888877 4456777777776553322 1221111111
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECC
Q 006961 248 VNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGE 297 (623)
Q Consensus 248 ~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpE 297 (623)
++. ......-.+.++|+ |+..+....-. ++.|++.+|--
T Consensus 154 ----~l~----~~~~~~~~~~VlE~-~s~~~~~~~l~--~~~p~iaViTn 192 (460)
T PRK00139 154 ----LLA----ELVDAGVTYAAMEV-SSHALDQGRVD--GLKFDVAVFTN 192 (460)
T ss_pred ----HHH----HHHHCCCCEEEEEc-chhhHhhchhc--CCcCCEEEEcC
Confidence 111 11112223689997 43322222222 25799888853
No 277
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.76 E-value=8.1e+02 Score=24.10 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=47.9
Q ss_pred EEEEecCC-CCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 97 VGIVFCGR-QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 97 IgIv~sGG-~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
||||...- ..|-...++.|+-+.+... +.++ .+..++. +.+
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~--g~~~---------------------------------~~~~~~~---~~~ 43 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEED--GVEV---------------------------------IVLDANG---DVA 43 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhc--CCEE---------------------------------EEEcCCc---CHH
Confidence 67777553 6777888888888776531 1111 1111111 233
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
...+.++.+...++|++++.+.+.+... ..+ +.+.+++ ++||.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~~--iPvV~~ 87 (275)
T cd06317 44 RQAAQVEDLIAQKVDGIILWPTDGQAYI-PGL-RKAKQAG--IPVVIT 87 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCccccH-HHH-HHHHHCC--CcEEEe
Confidence 3445677788889999999887643211 122 3344444 677743
No 278
>PHA02728 uncharacterized protein; Provisional
Probab=20.72 E-value=52 Score=30.89 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=12.3
Q ss_pred EeeecccCCCCCCC
Q 006961 222 GVPVTLNGDLKNQF 235 (623)
Q Consensus 222 GVPKTIDNDl~~~~ 235 (623)
-||-|+|||++++.
T Consensus 43 lvpytvdndlpnpn 56 (184)
T PHA02728 43 LVPYTVDNDLPNPN 56 (184)
T ss_pred ccceeccCCCCCCC
Confidence 38999999999885
No 279
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=20.57 E-value=2.6e+02 Score=29.82 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCccccc--CcCCCCCChHHHHHHHHHHHHcC
Q 006961 111 NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 188 (623)
Q Consensus 111 nVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lG--S~R~k~~t~e~~~~i~~~l~~~~ 188 (623)
..++..++.++..++. .+-+-.|..|-.... +.+.+..+++.-|...+- ++|+. +..+++..+..+..+|
T Consensus 39 ~~l~~~~~~l~~~~p~--fvsVT~~~~~~~~~r----~~~~a~~i~~~~g~~~i~Hltcr~~--n~~~l~~~L~~~~~~G 110 (296)
T PRK09432 39 QTLWNSIDRLSSLKPK--FVSVTYGANSGERDR----THSIIKGIKKRTGLEAAPHLTCIDA--TPDELRTIAKDYWNNG 110 (296)
T ss_pred HHHHHHHHHHHhcCCC--EEEEecCCCCcHHHH----HHHHHHHHHHHhCCCeeeecccCCC--CHHHHHHHHHHHHHCC
Confidence 3455556777766554 656666766643333 333345554554544332 35653 6788999999999999
Q ss_pred CCEEEEecCcc
Q 006961 189 LDGLVIIGGVT 199 (623)
Q Consensus 189 Id~LviIGGdg 199 (623)
|+.+++++||-
T Consensus 111 I~niLaLrGD~ 121 (296)
T PRK09432 111 IRHIVALRGDL 121 (296)
T ss_pred CCEEEEeCCCC
Confidence 99999999993
No 280
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=20.50 E-value=2.7e+02 Score=27.38 Aligned_cols=59 Identities=15% Similarity=0.352 Sum_probs=37.2
Q ss_pred ecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 006961 272 LMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334 (623)
Q Consensus 272 vMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsE 334 (623)
+-|...=-+++..||+..|+++++=|- ...++... .+.+.+.+.+..+ ..+-.||+++=
T Consensus 141 LS~G~~qrv~la~al~~~p~lllLDEP--~~~LD~~~-~~~l~~~l~~~~~-~~~~tii~~sH 199 (218)
T cd03255 141 LSGGQQQRVAIARALANDPKIILADEP--TGNLDSET-GKEVMELLRELNK-EAGTTIVVVTH 199 (218)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCC--cccCCHHH-HHHHHHHHHHHHH-hcCCeEEEEEC
Confidence 334444458999999999999999983 33354332 5666666665433 12456666663
No 281
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.46 E-value=3e+02 Score=26.49 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=38.6
Q ss_pred EEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 270 IRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 270 VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
-++-|..-=-+++..||..+|+++++=| |...++... .+.+.+.+.+..+ ++..||+++
T Consensus 126 ~~LS~G~~qrv~laral~~~p~llllDE--Pt~~LD~~~-~~~~~~~l~~~~~--~~~tili~s 184 (190)
T TIGR01166 126 HCLSGGEKKRVAIAGAVAMRPDVLLLDE--PTAGLDPAG-REQMLAILRRLRA--EGMTVVIST 184 (190)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcC--CcccCCHHH-HHHHHHHHHHHHH--cCCEEEEEe
Confidence 3454444555889999999999999998 334455433 5666677765433 345666665
No 282
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.28 E-value=2.9e+02 Score=28.52 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=56.6
Q ss_pred ecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHH-hhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhcc
Q 006961 225 VTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDA-LSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASK 303 (623)
Q Consensus 225 KTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da-~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~ 303 (623)
-|+.-|+.... ...|..-+ + +.+.+..+.... .+..+.+..-++-|..-=-+|+.++||.+|+++++=|- ...
T Consensus 95 ~tV~~evafg~--~n~g~~~~-e-~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEP--ta~ 168 (235)
T COG1122 95 PTVEDEVAFGL--ENLGLPRE-E-IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEP--TAG 168 (235)
T ss_pred CcHHHHHhhch--hhcCCCHH-H-HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCC--CCC
Confidence 46666666444 56777665 2 333333333222 23334467889999999999999999999999999993 333
Q ss_pred CCHHHHHHHHHHHHHH
Q 006961 304 LTLFDLTKQICDAVQA 319 (623)
Q Consensus 304 ~tL~~iv~~I~~~I~~ 319 (623)
++... .+++.+.+.+
T Consensus 169 LD~~~-~~~l~~~l~~ 183 (235)
T COG1122 169 LDPKG-RRELLELLKK 183 (235)
T ss_pred CCHHH-HHHHHHHHHH
Confidence 55433 4566666654
No 283
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.26 E-value=5.3e+02 Score=32.51 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCcchHHHHHHHHHHHHhcCCCCeEEEe-eecccC
Q 006961 177 VNAALTACKNLNLDGLVI-IGGVTSNTDAAYLAETFAEAKCPTKVVGV-PVTLNG 229 (623)
Q Consensus 177 ~~~i~~~l~~~~Id~Lvi-IGGdgS~~~A~~Lae~~~~~g~~i~VIGV-PKTIDN 229 (623)
.+.+++.+++.++|++++ +||+-.. .+++.+.+.| ++++|- |.+|+.
T Consensus 618 ~e~v~~i~~~e~~dgVi~~~g~~~~~----~la~~le~~G--i~ilg~s~~ai~~ 666 (1066)
T PRK05294 618 LEDVLEIIEKEKPKGVIVQFGGQTPL----KLAKALEAAG--VPILGTSPDAIDL 666 (1066)
T ss_pred HHHHHHHHHHcCCCEEEEEeCchhHH----HHHHHHHHCC--CceeCCCHHHHHH
Confidence 567888899999999998 6766544 4555555555 677775 467763
No 284
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.24 E-value=5.9e+02 Score=26.82 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=45.2
Q ss_pred HHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 006961 151 ILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 222 (623)
Q Consensus 151 ~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIG 222 (623)
..+.+...|+ .+..+.+.... ..++...+..+++.+-|.+++.+... .+..+.+.+++.|+++++++
T Consensus 158 ~~~~~~~~G~-~v~~~~~~~~~-~~d~s~~i~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 158 LTAALAARGL-KPVAVEWFNWG-DKDMTAQLLRAKAAGADAIIIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHHHHcCC-eeEEEeeecCC-CccHHHHHHHHHhCCCCEEEEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 3344555676 47766666553 45677888889999999988877433 33446677777887766665
No 285
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.19 E-value=4e+02 Score=25.81 Aligned_cols=106 Identities=15% Similarity=0.297 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcC
Q 006961 109 GHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 188 (623)
Q Consensus 109 ~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~ 188 (623)
+...+..+++.+. .++.++| +.+|-.+.++.-.-.|.... +|..+.|+....+ ++++.+++++.+++.+
T Consensus 33 g~dl~~~l~~~~~--~~~~~if-llG~~~~~~~~~~~~l~~~y-------P~l~ivg~~~g~f-~~~~~~~i~~~I~~~~ 101 (172)
T PF03808_consen 33 GSDLFPDLLRRAE--QRGKRIF-LLGGSEEVLEKAAANLRRRY-------PGLRIVGYHHGYF-DEEEEEAIINRINASG 101 (172)
T ss_pred HHHHHHHHHHHHH--HcCCeEE-EEeCCHHHHHHHHHHHHHHC-------CCeEEEEecCCCC-ChhhHHHHHHHHHHcC
Q ss_pred CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 189 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 189 Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
-|.|++ |-|+=..-.-++++..+-+.. -++||-.++|
T Consensus 102 pdiv~v--glG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 102 PDIVFV--GLGAPKQERWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred CCEEEE--ECCCCHHHHHHHHHHHHCCCC-EEEEECchhh
No 286
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=20.06 E-value=2.6e+02 Score=29.79 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=50.5
Q ss_pred CeeecCHhHHhchhhc-CCc-ccc-cCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcch--------HHHHHHHHHHH
Q 006961 143 KTLEVTKEILSTYKNQ-GGY-DML-GRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTS--------NTDAAYLAETF 211 (623)
Q Consensus 143 ~~~eLt~~~v~~~~n~-GG~-~~l-GS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS--------~~~A~~Lae~~ 211 (623)
...+.|...+..++.. +|. .+. =++|+. +...++..++.+.++||..++.++||-. ...|..|-+..
T Consensus 59 ~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~--n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~li 136 (291)
T COG0685 59 GTPRRTSVAAAALLKRTGGIEPIPHLTCRDR--NRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELI 136 (291)
T ss_pred CCCcccHHHHHHHHHhcCCCccceeecccCC--CHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHH
Confidence 4556676666666544 454 221 135554 6788999999999999999999999984 34667777777
Q ss_pred HhcC
Q 006961 212 AEAK 215 (623)
Q Consensus 212 ~~~g 215 (623)
++.+
T Consensus 137 k~~~ 140 (291)
T COG0685 137 KKMR 140 (291)
T ss_pred HHhc
Confidence 7554
Done!