Query 006961
Match_columns 623
No_of_seqs 308 out of 1258
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f48_A Diphosphate--fructose-6 100.0 5E-133 2E-137 1112.6 46.8 527 27-568 11-554 (555)
2 2hig_A 6-phospho-1-fructokinas 100.0 2.3E-85 7.8E-90 717.4 37.7 420 15-534 19-451 (487)
3 3hno_A Pyrophosphate-dependent 100.0 3.9E-84 1.3E-88 700.1 36.0 341 94-500 3-361 (419)
4 1zxx_A 6-phosphofructokinase; 100.0 5E-81 1.7E-85 654.8 36.4 302 95-500 2-304 (319)
5 1pfk_A Phosphofructokinase; tr 100.0 8.2E-81 2.8E-85 653.4 36.1 301 95-499 3-305 (320)
6 4a3s_A 6-phosphofructokinase; 100.0 7.1E-78 2.4E-82 632.1 34.5 302 95-500 2-304 (319)
7 3o8l_A 6-phosphofructokinase, 100.0 3.3E-73 1.1E-77 649.0 30.7 321 92-500 13-356 (762)
8 3o8o_B 6-phosphofructokinase s 100.0 3.4E-72 1.2E-76 641.0 38.4 319 94-499 3-345 (766)
9 3o8o_A 6-phosphofructokinase s 100.0 3.9E-72 1.3E-76 640.3 35.1 319 93-499 4-345 (787)
10 3o8l_A 6-phosphofructokinase, 100.0 6E-72 2.1E-76 638.6 34.4 315 92-497 398-728 (762)
11 3opy_B 6-phosphofructo-1-kinas 100.0 6.7E-72 2.3E-76 644.9 33.7 322 92-500 179-524 (941)
12 3opy_A 6-phosphofructo-1-kinas 100.0 1.9E-71 6.4E-76 639.4 34.9 321 92-500 208-551 (989)
13 3o8o_A 6-phosphofructokinase s 100.0 1E-69 3.6E-74 620.4 34.7 317 92-498 391-745 (787)
14 3opy_B 6-phosphofructo-1-kinas 100.0 4.2E-69 1.5E-73 621.6 33.0 318 92-499 569-912 (941)
15 3o8o_B 6-phosphofructokinase s 100.0 7E-69 2.4E-73 613.7 33.3 317 92-498 391-735 (766)
16 3opy_A 6-phosphofructo-1-kinas 100.0 7.7E-68 2.6E-72 609.4 32.7 293 92-468 596-894 (989)
17 2an1_A Putative kinase; struct 93.4 0.098 3.3E-06 53.2 6.3 89 95-224 6-94 (292)
18 3m9w_A D-xylose-binding peripl 88.7 15 0.0005 36.3 16.7 105 94-244 2-106 (313)
19 2i2c_A Probable inorganic poly 88.2 0.37 1.3E-05 48.7 4.5 47 176-225 16-69 (272)
20 3g1w_A Sugar ABC transporter; 83.3 35 0.0012 33.2 18.5 132 93-271 3-134 (305)
21 1z0s_A Probable inorganic poly 83.2 0.47 1.6E-05 48.6 2.3 53 188-258 68-122 (278)
22 3gbv_A Putative LACI-family tr 77.5 43 0.0015 32.3 14.4 111 92-244 6-117 (304)
23 3l49_A ABC sugar (ribose) tran 75.4 59 0.002 31.2 17.9 154 93-298 4-163 (291)
24 3l6u_A ABC-type sugar transpor 73.1 24 0.00081 34.1 11.2 107 92-244 6-112 (293)
25 1u0t_A Inorganic polyphosphate 72.9 2.4 8E-05 43.5 3.9 33 187-224 74-106 (307)
26 1oj7_A Hypothetical oxidoreduc 72.8 4.4 0.00015 43.1 6.1 55 173-227 91-161 (408)
27 3tb6_A Arabinose metabolism tr 72.5 20 0.00067 34.7 10.4 105 95-244 16-121 (298)
28 3jy6_A Transcriptional regulat 72.1 44 0.0015 32.0 12.8 103 92-244 5-107 (276)
29 3ksm_A ABC-type sugar transpor 71.9 28 0.00097 33.1 11.3 106 95-244 1-107 (276)
30 3egc_A Putative ribose operon 71.3 11 0.00037 36.8 8.2 104 92-244 6-109 (291)
31 3k4h_A Putative transcriptiona 70.8 18 0.00062 34.9 9.7 105 92-244 6-115 (292)
32 3uhj_A Probable glycerol dehyd 69.7 7.4 0.00025 41.3 7.0 49 173-226 91-139 (387)
33 3pfn_A NAD kinase; structural 69.5 2.7 9.1E-05 44.7 3.4 122 91-257 35-162 (365)
34 3iv7_A Alcohol dehydrogenase I 69.3 7.1 0.00024 41.1 6.7 52 173-230 73-124 (364)
35 3brq_A HTH-type transcriptiona 68.7 39 0.0013 32.5 11.5 104 92-244 17-123 (296)
36 1jq5_A Glycerol dehydrogenase; 68.7 10 0.00035 39.6 7.7 48 174-226 72-119 (370)
37 8abp_A L-arabinose-binding pro 68.1 86 0.0029 30.3 14.0 87 94-223 2-88 (306)
38 3jzd_A Iron-containing alcohol 67.8 8.1 0.00028 40.6 6.7 50 173-227 74-123 (358)
39 3hl0_A Maleylacetate reductase 67.4 9.9 0.00034 39.8 7.3 50 173-227 72-121 (353)
40 1o2d_A Alcohol dehydrogenase, 66.8 6.2 0.00021 41.4 5.6 58 173-230 83-153 (371)
41 3ox4_A Alcohol dehydrogenase 2 66.3 11 0.00036 39.9 7.3 58 173-230 73-143 (383)
42 1yt5_A Inorganic polyphosphate 66.1 2.1 7.3E-05 42.8 1.7 32 187-224 40-71 (258)
43 3l8m_A Probable thiamine pyrop 66.0 24 0.00082 34.3 9.3 81 125-209 21-115 (212)
44 3afo_A NADH kinase POS5; alpha 65.5 2.4 8.1E-05 45.4 2.1 54 187-257 113-169 (388)
45 1rrm_A Lactaldehyde reductase; 64.7 11 0.00039 39.5 7.1 56 173-228 73-143 (386)
46 3rot_A ABC sugar transporter, 64.4 47 0.0016 32.3 11.3 107 94-244 3-112 (297)
47 3uug_A Multiple sugar-binding 64.1 59 0.002 31.9 12.0 104 94-243 3-107 (330)
48 3dbi_A Sugar-binding transcrip 64.1 46 0.0016 33.1 11.4 105 92-244 59-165 (338)
49 3s4y_A Thiamin pyrophosphokina 62.6 28 0.00096 34.7 9.2 105 93-210 19-149 (247)
50 3kjx_A Transcriptional regulat 61.4 71 0.0024 31.9 12.2 88 92-223 66-153 (344)
51 3rf7_A Iron-containing alcohol 61.3 9.9 0.00034 40.2 5.9 55 173-227 91-161 (375)
52 2qv7_A Diacylglycerol kinase D 61.3 7.7 0.00026 39.9 5.0 48 182-232 74-121 (337)
53 3bfj_A 1,3-propanediol oxidore 59.8 17 0.0006 38.1 7.5 55 173-227 77-144 (387)
54 3o1i_D Periplasmic protein TOR 59.8 31 0.001 33.4 8.9 107 93-244 4-115 (304)
55 3o74_A Fructose transport syst 59.5 32 0.0011 32.7 8.8 103 94-244 2-104 (272)
56 3clh_A 3-dehydroquinate syntha 58.6 12 0.00042 38.8 6.0 53 172-227 66-121 (343)
57 3nkl_A UDP-D-quinovosamine 4-d 58.1 41 0.0014 29.2 8.7 98 93-225 3-100 (141)
58 1xah_A Sadhqs, 3-dehydroquinat 57.5 12 0.00042 38.9 5.8 52 173-227 72-126 (354)
59 2bon_A Lipid kinase; DAG kinas 56.6 13 0.00043 38.3 5.6 46 184-232 78-125 (332)
60 1vlj_A NADH-dependent butanol 55.6 18 0.0006 38.4 6.7 55 173-227 86-153 (407)
61 3e3m_A Transcriptional regulat 55.5 69 0.0023 32.2 11.0 87 93-223 69-155 (355)
62 1sg6_A Pentafunctional AROM po 53.8 18 0.00062 38.2 6.4 53 172-227 84-141 (393)
63 3ce9_A Glycerol dehydrogenase; 53.6 11 0.00039 39.0 4.7 52 173-230 74-125 (354)
64 3lm8_A Thiamine pyrophosphokin 53.4 38 0.0013 33.1 8.2 83 126-211 25-121 (222)
65 3s40_A Diacylglycerol kinase; 52.8 12 0.0004 38.0 4.6 50 179-232 55-104 (304)
66 1meo_A Phosophoribosylglycinam 50.2 62 0.0021 31.3 9.1 93 95-207 1-97 (209)
67 3auf_A Glycinamide ribonucleot 48.8 1E+02 0.0036 30.1 10.6 102 90-208 18-120 (229)
68 3okf_A 3-dehydroquinate syntha 47.9 22 0.00074 37.9 5.9 53 172-227 104-159 (390)
69 1ujn_A Dehydroquinate synthase 47.5 23 0.00078 36.8 5.9 52 173-227 66-120 (348)
70 3k94_A Thiamin pyrophosphokina 46.9 65 0.0022 31.5 8.7 72 126-200 24-104 (223)
71 3qbe_A 3-dehydroquinate syntha 46.9 26 0.00091 36.9 6.3 52 173-227 85-139 (368)
72 3brs_A Periplasmic binding pro 45.8 61 0.0021 31.0 8.4 108 93-244 4-113 (289)
73 3c3k_A Alanine racemase; struc 45.4 1.4E+02 0.0049 28.5 11.1 102 93-244 7-108 (285)
74 3cs3_A Sugar-binding transcrip 45.4 1.2E+02 0.0041 28.9 10.5 30 93-122 7-36 (277)
75 1qpz_A PURA, protein (purine n 45.2 2.4E+02 0.0081 27.9 14.0 105 93-244 57-161 (340)
76 2fep_A Catabolite control prot 44.7 1.3E+02 0.0045 28.9 10.7 103 93-244 15-117 (289)
77 1hyq_A MIND, cell division inh 44.6 1.9E+02 0.0067 27.4 11.8 25 196-220 12-36 (263)
78 1kq3_A Glycerol dehydrogenase; 44.1 19 0.00064 37.7 4.6 48 173-226 80-127 (376)
79 3hs3_A Ribose operon repressor 43.9 34 0.0012 33.0 6.2 98 92-244 8-107 (277)
80 2rgy_A Transcriptional regulat 43.7 1.2E+02 0.0042 29.1 10.3 103 93-244 7-112 (290)
81 2fn9_A Ribose ABC transporter, 42.7 1.7E+02 0.006 27.8 11.2 104 95-244 3-107 (290)
82 2iks_A DNA-binding transcripti 42.6 85 0.0029 30.3 8.9 105 92-244 18-122 (293)
83 3av3_A Phosphoribosylglycinami 41.5 93 0.0032 30.0 8.8 98 94-208 3-101 (212)
84 1jkx_A GART;, phosphoribosylgl 41.0 1.2E+02 0.0042 29.2 9.6 97 95-208 1-98 (212)
85 1ta9_A Glycerol dehydrogenase; 40.8 22 0.00077 38.4 4.7 48 173-226 131-178 (450)
86 3p9x_A Phosphoribosylglycinami 40.0 1.3E+02 0.0046 29.1 9.7 99 94-209 2-101 (211)
87 3kke_A LACI family transcripti 39.7 2.7E+02 0.0091 26.9 12.6 103 92-244 13-115 (303)
88 2gru_A 2-deoxy-scyllo-inosose 39.4 33 0.0011 35.9 5.6 52 173-227 76-130 (368)
89 3h5o_A Transcriptional regulat 39.4 2.9E+02 0.0099 27.2 13.5 87 93-223 61-147 (339)
90 2o20_A Catabolite control prot 39.1 2.2E+02 0.0076 28.0 11.6 103 93-244 62-164 (332)
91 2pn1_A Carbamoylphosphate synt 38.7 2.3E+02 0.0079 27.9 11.7 47 173-222 57-103 (331)
92 3k9c_A Transcriptional regulat 38.5 78 0.0027 30.6 7.9 101 92-244 10-110 (289)
93 3d8u_A PURR transcriptional re 38.1 61 0.0021 30.8 6.9 102 94-244 3-104 (275)
94 2dri_A D-ribose-binding protei 36.7 2.8E+02 0.0095 26.2 12.1 104 95-244 2-105 (271)
95 3nxk_A Cytoplasmic L-asparagin 35.1 2.7E+02 0.0091 28.9 11.6 50 173-224 70-122 (334)
96 4ds3_A Phosphoribosylglycinami 35.0 1.4E+02 0.0048 28.8 8.9 96 92-207 5-104 (209)
97 3ihk_A Thiamin pyrophosphokina 34.8 74 0.0025 30.9 6.9 87 98-200 4-100 (218)
98 3gv0_A Transcriptional regulat 33.1 32 0.0011 33.3 4.1 103 93-244 7-111 (288)
99 1iv0_A Hypothetical protein; r 32.9 32 0.0011 29.4 3.5 33 200-232 36-68 (98)
100 3bbl_A Regulatory protein of L 31.8 1.8E+02 0.0061 27.9 9.2 102 94-244 4-109 (287)
101 2vk2_A YTFQ, ABC transporter p 31.7 2.3E+02 0.008 27.3 10.2 105 94-244 2-109 (306)
102 1tjy_A Sugar transport protein 31.6 1.9E+02 0.0067 28.3 9.7 106 94-244 3-109 (316)
103 8abp_A L-arabinose-binding pro 31.3 2.3E+02 0.008 27.1 10.0 48 174-223 180-231 (306)
104 3o1l_A Formyltetrahydrofolate 31.1 2E+02 0.0069 29.3 9.8 97 93-208 104-200 (302)
105 3clk_A Transcription regulator 30.8 2.2E+02 0.0075 27.2 9.7 103 93-244 7-109 (290)
106 2kwv_A RAD30 homolog B, DNA po 30.5 20 0.00069 26.9 1.5 18 372-389 18-35 (48)
107 2h3h_A Sugar ABC transporter, 29.5 2.7E+02 0.0093 26.9 10.3 62 175-244 44-105 (313)
108 3apt_A Methylenetetrahydrofola 29.3 41 0.0014 34.5 4.2 102 114-224 32-150 (310)
109 3jvd_A Transcriptional regulat 28.9 77 0.0026 31.6 6.2 97 92-244 62-158 (333)
110 2fvy_A D-galactose-binding per 28.7 3.9E+02 0.013 25.4 12.3 87 95-223 3-90 (309)
111 2yxb_A Coenzyme B12-dependent 28.3 2.1E+02 0.0073 26.0 8.6 93 93-201 17-111 (161)
112 3fst_A 5,10-methylenetetrahydr 28.2 53 0.0018 33.7 4.8 104 113-224 41-153 (304)
113 3gyb_A Transcriptional regulat 28.0 2E+02 0.0068 27.2 8.8 39 93-133 4-42 (280)
114 3dnf_A ISPH, LYTB, 4-hydroxy-3 27.9 63 0.0022 33.2 5.2 53 174-228 196-248 (297)
115 3lkv_A Uncharacterized conserv 27.4 1.3E+02 0.0046 29.6 7.6 94 92-226 6-99 (302)
116 2x7x_A Sensor protein; transfe 27.3 4.4E+02 0.015 25.6 13.5 106 93-244 5-110 (325)
117 4pga_A Glutaminase-asparaginas 27.1 1.4E+02 0.0047 31.1 7.8 50 173-224 71-124 (337)
118 3e61_A Putative transcriptiona 26.4 80 0.0027 30.0 5.6 99 93-244 7-106 (277)
119 1ccw_A Protein (glutamate muta 26.1 1.2E+02 0.0041 26.9 6.3 88 95-199 4-94 (137)
120 1vdr_A DHFR, dihydrofolate red 26.1 29 0.00098 31.8 2.1 52 176-234 81-132 (162)
121 1o7j_A L-asparaginase; atomic 26.0 4.2E+02 0.014 27.1 11.2 50 173-224 66-119 (327)
122 2rjo_A Twin-arginine transloca 25.8 4.7E+02 0.016 25.4 11.5 92 93-226 4-97 (332)
123 2wlt_A L-asparaginase; hydrola 25.7 4E+02 0.014 27.3 11.0 50 173-224 66-119 (332)
124 3mjf_A Phosphoribosylamine--gl 25.5 53 0.0018 34.8 4.4 43 175-222 54-96 (431)
125 3mel_A Thiamin pyrophosphokina 25.2 68 0.0023 31.3 4.7 91 98-200 4-104 (222)
126 3qk7_A Transcriptional regulat 24.9 61 0.0021 31.5 4.4 102 93-244 5-110 (294)
127 3q12_A Pantoate--beta-alanine 24.8 90 0.0031 31.9 5.6 39 258-296 18-57 (287)
128 3lp6_A Phosphoribosylaminoimid 24.7 81 0.0028 30.0 4.9 47 173-226 47-94 (174)
129 1jak_A Beta-N-acetylhexosamini 24.7 3.3E+02 0.011 29.8 10.6 107 160-272 161-321 (512)
130 3ksm_A ABC-type sugar transpor 24.7 2.6E+02 0.0088 26.1 8.8 104 114-223 112-220 (276)
131 3hut_A Putative branched-chain 24.6 3E+02 0.01 26.9 9.7 32 93-124 3-36 (358)
132 1vp8_A Hypothetical protein AF 24.5 1.2E+02 0.0041 29.4 6.1 47 172-224 27-73 (201)
133 3ot5_A UDP-N-acetylglucosamine 24.4 2.9E+02 0.0099 28.6 9.8 114 95-224 28-145 (403)
134 2v5c_A O-GLCNACASE NAGJ; glyco 24.2 5.8E+02 0.02 28.5 12.6 86 160-257 153-252 (594)
135 2him_A L-asparaginase 1; hydro 24.1 1.6E+02 0.0055 30.8 7.7 52 173-225 84-137 (358)
136 2omk_A Hypothetical protein; s 23.4 2.7E+02 0.0093 27.2 8.7 99 98-210 34-146 (231)
137 2ywr_A Phosphoribosylglycinami 23.4 3E+02 0.01 26.4 9.0 96 95-207 2-98 (216)
138 3fij_A LIN1909 protein; 11172J 23.3 2E+02 0.0067 28.1 7.8 46 145-199 27-72 (254)
139 3szu_A ISPH, 4-hydroxy-3-methy 23.2 1.1E+02 0.0038 31.8 6.1 40 175-216 213-252 (328)
140 3h75_A Periplasmic sugar-bindi 22.8 5.5E+02 0.019 25.2 11.6 30 94-123 3-33 (350)
141 3mxt_A Pantothenate synthetase 22.4 1E+02 0.0036 31.4 5.6 37 259-296 19-56 (285)
142 3miz_A Putative transcriptiona 22.3 1.1E+02 0.0038 29.6 5.8 103 92-244 11-115 (301)
143 2i2x_B MTAC, methyltransferase 22.3 2.5E+02 0.0086 27.5 8.4 93 93-201 122-215 (258)
144 2d6f_A Glutamyl-tRNA(Gln) amid 22.0 1.7E+02 0.0059 31.5 7.5 51 173-225 149-202 (435)
145 2pbq_A Molybdenum cofactor bio 21.8 74 0.0025 29.7 4.1 57 141-199 19-79 (178)
146 4fle_A Esterase; structural ge 21.6 1.1E+02 0.0038 27.4 5.2 79 191-291 4-86 (202)
147 1dbq_A Purine repressor; trans 21.5 4.1E+02 0.014 25.0 9.6 105 93-244 6-110 (289)
148 1agx_A Glutaminase-asparaginas 21.4 1.2E+02 0.0042 31.3 6.0 49 173-223 63-115 (331)
149 3ors_A N5-carboxyaminoimidazol 21.2 80 0.0027 29.7 4.1 84 173-284 43-132 (163)
150 3trh_A Phosphoribosylaminoimid 21.0 79 0.0027 29.9 4.0 47 173-226 46-93 (169)
151 1x60_A Sporulation-specific N- 20.9 2E+02 0.0068 22.6 6.0 46 172-217 18-72 (79)
152 3e61_A Putative transcriptiona 20.9 3.6E+02 0.012 25.2 9.1 25 175-199 108-132 (277)
153 2i4r_A V-type ATP synthase sub 20.7 83 0.0028 27.1 3.8 31 311-342 39-69 (102)
154 2nrr_A Uvrabc system protein C 20.5 92 0.0031 29.2 4.3 94 168-265 52-153 (159)
155 4b4t_W RPN10, 26S proteasome r 20.5 2.3E+02 0.0077 28.5 7.6 50 175-224 89-145 (268)
156 3oow_A Phosphoribosylaminoimid 20.4 1.3E+02 0.0043 28.4 5.3 46 173-225 45-91 (166)
157 2gzm_A Glutamate racemase; enz 20.4 3.2E+02 0.011 26.8 8.8 91 96-223 5-95 (267)
158 1nu0_A Hypothetical protein YQ 20.4 67 0.0023 29.1 3.3 28 204-231 42-69 (138)
159 3h5t_A Transcriptional regulat 20.3 95 0.0032 31.2 4.9 55 178-243 118-172 (366)
160 3kuu_A Phosphoribosylaminoimid 20.3 77 0.0026 30.1 3.8 47 173-226 52-99 (174)
No 1
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=4.6e-133 Score=1112.56 Aligned_cols=527 Identities=37% Similarity=0.688 Sum_probs=500.3
Q ss_pred hcccCCCccCcCCCc--eeeecCCCcccCCCCChhHHhhhCCCcCCCCceeEecCccCCCCcccccCCCceEEEEEecCC
Q 006961 27 LLQMFSFNANMQGTT--VRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGR 104 (623)
Q Consensus 27 ~~~~p~lp~~l~~~~--~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIv~sGG 104 (623)
+..+|+||+.|++.. ++++.|+.++++ .|+++|+++||||||+|.++|++++. + ....+.+||||+||||
T Consensus 11 ~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~p~~~~~~~~~---~---~~~~~~~~igIltsGG 82 (555)
T 2f48_A 11 QKYIPKLPNILKKDFNNISLVYGENTEAI--QDRQALKEFFKNTYGLPIISFTEGES---S---LSFSKALNIGIILSGG 82 (555)
T ss_dssp TTCCCCCCGGGGSCGGGEEEEECCCCCCS--SCHHHHHHHTTTTTTCCCEEEEESCC---C---CSCCSCCEEEEEEBSS
T ss_pred hcCCCCCCHHHhCCccceeeecCCcccCc--cCHHHHHHhCccccCCCcEEEecCCc---c---cccCCCcEEEEECcCC
Confidence 348999999999863 899999999887 99999999999999999999998752 1 1356678999999999
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHH
Q 006961 105 QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTAC 184 (623)
Q Consensus 105 ~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l 184 (623)
|||||||||+|++++++..+++++||||++||+||+++++++|+++.|+.|+++|||++|||+|.++++++++++++++|
T Consensus 83 daPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~l 162 (555)
T 2f48_A 83 PAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVA 162 (555)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999999999559999999998999999999999
Q ss_pred HHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhcc
Q 006961 185 KNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE 264 (623)
Q Consensus 185 ~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~ 264 (623)
++++||+||+||||||+++|+.|++++++++++++||||||||||||+++.+|+|||||||+++++++|++|++||.|++
T Consensus 163 ~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~~ 242 (555)
T 2f48_A 163 KENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTK 242 (555)
T ss_dssp HHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHH
Q 006961 265 KYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVY 344 (623)
Q Consensus 265 k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~ 344 (623)
+||||||||||+||||||+||||+|||+|||||++++++++|++++++|++.|++|+.+||+|+|||||||+++++|+++
T Consensus 243 ~rv~iVEvMGR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~~~~~ 322 (555)
T 2f48_A 243 KYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEVK 322 (555)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHHHH
T ss_pred CcEEEEEeCCcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccccchHH
Confidence 89999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCC----------CccccccCChhhhhhhccChhHHHhhhh---cCCCCCCCcccchhhhHHHHHHHH
Q 006961 345 ALLKEIHSLLRQGVP----------VDNISSQLSPWASALFEFLPPFIKKQLL---LQPESDDSAQLSQIETEKLLAHLV 411 (623)
Q Consensus 345 ~li~el~~~~~~~~~----------~~~~~~~ls~~s~~lf~~lp~~i~~~l~---~~rD~~Gn~~ls~I~te~lL~~lV 411 (623)
.|++|++++++++.. .+.+.++||+|++++|.+||++|++||+ .++|+|||+++++|+||++|+++|
T Consensus 323 ~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~~v 402 (555)
T 2f48_A 323 SLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMI 402 (555)
T ss_dssp HHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHHHH
T ss_pred HHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHHHHH
Confidence 999999998875411 1346788999999999999999999987 689999999999999999999999
Q ss_pred HHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecc
Q 006961 412 EVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAP 491 (623)
Q Consensus 412 ~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vP 491 (623)
+++|++++.+++|++. |++|+|+|||+||||.||+|||.||++||+.||+++++|.||+|++++|++.++|+|++.++|
T Consensus 403 ~~~l~~~~~~~~~~~~-~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~vP 481 (555)
T 2f48_A 403 QSRLNDMKKRGEYKGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVP 481 (555)
T ss_dssp HHHHHHHHTTTCCCSC-CCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEEE
T ss_pred HHHHHHHhcccCcccc-eeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEeee
Confidence 9999999999999887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHHHHhhhccccCcccCCCcccccCCCC--CCCcceeEeccc
Q 006961 492 ITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA--DAKAVTLCVEDR 568 (623)
Q Consensus 492 l~~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~--~~~~~tl~~~~~ 568 (623)
|++|||+|| |+| +.+|+|++++|||+|++|++|+++|++|+++|+|||||||||+||.+ |++++||.||+.
T Consensus 482 l~~~~n~ek-~~g-----~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~~ 554 (555)
T 2f48_A 482 LTMLMNMEE-RYG-----EKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEITETLKLELF 554 (555)
T ss_dssp GGGGEEEEE-ETT-----EEEEEECCCCCCTTSHHHHHHHHHHHHHHHSCCCCCCCCCCCSSCHHHHTCCCHHHHHHTC
T ss_pred HHHHhhhhh-hcC-----ccccceeeeeeCCCCHHHHHHHHHHHHhhhcCcccCCCCEeecCccccccCCCceeecccc
Confidence 999999999 999 89999999999999999999999999999999999999999999998 999999999864
No 2
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=2.3e-85 Score=717.43 Aligned_cols=420 Identities=18% Similarity=0.227 Sum_probs=348.1
Q ss_pred cccccchhHHHhhc--ccCCCccCcCCCceeeecCCCcccCCCCChhHHhhhCCCcCC-------CCceeEecCccCCCC
Q 006961 15 FHFWDIALLAIYLL--QMFSFNANMQGTTVRVEFGDSTTTADPADTHSISRSFPHTYG-------QPLAHFLRATAKVPD 85 (623)
Q Consensus 15 ~~~~~~~~~~~~~~--~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~-------~~~~~~~~~~~~~~~ 85 (623)
+.+++||.+.-.++ ..+++|++|+.... .+.. ++ +++..+.++.++... .+..+|.+++ ||
T Consensus 19 ~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~---~~~~---~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ag---pr 88 (487)
T 2hig_A 19 AMLNSVTQEDLKVDRLPGADYPNPSKKYSS---RTEF---RD-KTDYIMYNPRPRDEPSSENPVSVSPLLCELAA---AR 88 (487)
T ss_dssp CSCSSCCTTTTCCEECSCCCEECTTCCGGG---GGGS---BS-SCCEEESCCCBCC-----CCBBSCCCEEEECC---CB
T ss_pred ccccCCCccccccCcCCCCCCCCcccccCC---CCee---eC-CCCEEEEeeeccCCCccccccccchHHHHHcC---Cc
Confidence 67888888865665 34789999955312 1111 11 333343444433221 2235799998 99
Q ss_pred cccccCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhc---CCeeecCHhHHhchhhcCCcc
Q 006961 86 AQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA---QKTLEVTKEILSTYKNQGGYD 162 (623)
Q Consensus 86 ~~~~~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~---~~~~eLt~~~v~~~~n~GG~~ 162 (623)
++++++++.+||||+||||||||||+||+++++++...++..+||||++||+||++ +++++|+++.|+.|+++|||
T Consensus 89 ~~i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGT- 167 (487)
T 2hig_A 89 SRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGT- 167 (487)
T ss_dssp SEESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSC-
T ss_pred ceeeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCC-
Confidence 99999999999999999999999999999999998754555599999999999964 69999999999999999996
Q ss_pred cccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCh
Q 006961 163 MLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGF 242 (623)
Q Consensus 163 ~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GF 242 (623)
+|||+|.+.+ .++++++|++++||+||+||||||+++|+.|++++.++|++++||||||||||||+++| +||||
T Consensus 168 iLGTsR~~~~----~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD--~T~GF 241 (487)
T 2hig_A 168 ILGSSRGPQD----PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSH--RTFGF 241 (487)
T ss_dssp SSCCCCSCCC----HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSS--CCTTH
T ss_pred eeccCCCCCC----HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCC--CCCCH
Confidence 9999999863 35999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcC-CcEEEECCcchhccCCHHHHHHHHHHHHHHHH
Q 006961 243 DTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH-PNMVILGEEVAASKLTLFDLTKQICDAVQARA 321 (623)
Q Consensus 243 dTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~-pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~ 321 (623)
|||+++++++|++|+.||.|++++|||||||||+||||||+||||++ ||+|||||++ ++++ .+++.|++|+
T Consensus 242 dTAv~~~~eaId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p----~~l~----~i~~~i~~r~ 313 (487)
T 2hig_A 242 QTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENP----ISEQ----EVMSLLERRF 313 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSC----CCHH----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCC----CCHH----HHHHHHHHHH
Confidence 99999999999999999999987899999999999999999999999 9999999986 5654 5667778887
Q ss_pred HcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchh
Q 006961 322 EQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQI 401 (623)
Q Consensus 322 ~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I 401 (623)
+ +|+|+|||||||+...+.+ . ...+|++||+++++|
T Consensus 314 ~-~k~~~IIvVaEGag~~~~~----------------------------------~---------~~~~Da~G~~~l~~i 349 (487)
T 2hig_A 314 C-HSRSCVIIVAEGFGQDWGR----------------------------------G---------SGGYDASGNKKLIDI 349 (487)
T ss_dssp T-SCSEEEEEEETTTTGGGCC----------------------------------C-----------CBCTTSCBCCCCH
T ss_pred h-cCCcEEEEEeCCCcccccc----------------------------------c---------ccccccccCcchhHH
Confidence 6 6999999999999532100 0 125799999999985
Q ss_pred hhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 006961 402 ETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNP 481 (623)
Q Consensus 402 ~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~ 481 (623)
+++|++++++++.++..+ ..+|++|+..|||+||||.||+|||.||++||..||+++++|.+|+|++++|.+
T Consensus 350 --~~~l~~~i~~~~~~~g~~----~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~mVgi~~~~-- 421 (487)
T 2hig_A 350 --GVILTEKVKAFLKANKSR----YPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNN-- 421 (487)
T ss_dssp --HHHHHHHHHHHHHTTTTT----SSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESEEEEEETTE--
T ss_pred --HHHHHHHHHHHHhhcCcc----ccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE--
Confidence 467777776666543211 112589999999999999999999999999999999999999999999999974
Q ss_pred CCceeEEecchHhhhhhccccCCCCCCCCCcceeeeeEEcCCChHHHHHHHHh
Q 006961 482 ANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNA 534 (623)
Q Consensus 482 ~~~w~~~~vPl~~~~~~e~~r~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r 534 (623)
+..+||.++++.. ..||.++..++.++..-
T Consensus 422 -----i~~vPl~ev~~~~------------------k~v~~~~~~w~~~~~~~ 451 (487)
T 2hig_A 422 -----YILVPIKVATSVR------------------RVLDLRGQLWRQVREIT 451 (487)
T ss_dssp -----EEEEEHHHHTTEE------------------EEECTTSHHHHHHHHHS
T ss_pred -----EEEEEHHHHHccC------------------CCcCcchHHHHHHHHHh
Confidence 8999999997633 35677888777766553
No 3
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=3.9e-84 Score=700.08 Aligned_cols=341 Identities=17% Similarity=0.245 Sum_probs=291.5
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCC-CCEEEEEccChhhhhcCCeeecCH---hHHhchhhcCCcccccCcCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNP-KSTLLGFLGGSEGLFAQKTLEVTK---EILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~-~~~v~Gf~~G~~GL~~~~~~eLt~---~~v~~~~n~GG~~~lGS~R~ 169 (623)
++||||+|||||||||||||+|+++++..... ..+||||++||+||+++++++|+. ++++.|+++||| +|||+|.
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGt-iLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSG-AFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSC-TTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCc-eecCCCC
Confidence 57999999999999999999999999875432 339999999999999999999854 589999999997 9999999
Q ss_pred CC----CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhH
Q 006961 170 QI----RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 245 (623)
Q Consensus 170 k~----~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA 245 (623)
++ ++++++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||+++| +|||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD--~t~GFdTA 159 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITD--CCPGFGSV 159 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSS--SCTTHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCC--CCCCchHH
Confidence 87 5889999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccC---ceEEEEecCCCccHHHHHhhhh-----cCCcEEEECCcchhccCCHHHHHHHHHHHH
Q 006961 246 CKVNSQLISNVCTDALSAEK---YYYFIRLMGRRASHVALECTLQ-----SHPNMVILGEEVAASKLTLFDLTKQICDAV 317 (623)
Q Consensus 246 ~~~~s~~I~ni~~da~S~~k---~~~fVevMGR~aG~LAL~~aLa-----t~pniilIpEe~~~~~~tL~~iv~~I~~~I 317 (623)
+++++++|+++.+|++|+++ +|||||||||+||||||+|||| ++||+|||||++ +++ +.+++.|
T Consensus 160 ~~~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~----f~~----~~~~~~i 231 (419)
T 3hno_A 160 AKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEIS----FDK----QKFLAKV 231 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSC----CCH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCC----CCH----HHHHHHH
Confidence 99999999999889888765 7999999999999999999999 799999999987 454 4556666
Q ss_pred HHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcc
Q 006961 318 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQ 397 (623)
Q Consensus 318 ~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ 397 (623)
++|+++ ++|+|||||||+.+..+++ +.++ ..+|+|||++
T Consensus 232 ~~~~~~-~~~~iIvVaEG~~~~~g~~--------------------------------------i~~~--~~~D~~G~~~ 270 (419)
T 3hno_A 232 DSCVKK-FGYCSVVVSEGVKGDDGKF--------------------------------------LSDQ--GVRDAFGHAQ 270 (419)
T ss_dssp HHHHHH-HSCEEEEEETTCCCSSSCC------------------------------------------------------
T ss_pred HHHHHh-CCCEEEEEeCCCcccCCcc--------------------------------------hhcc--cccccccCcc
Confidence 777665 6799999999998753321 1111 3589999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEE
Q 006961 398 LSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSL--PSKFDCDYAYVLGHICYHILAAGLNGYMATV 475 (623)
Q Consensus 398 ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~--PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i 475 (623)
++++ +++|+++|++++ | +++|.++|||+||||. ||+|||.||++||..||+++++|.+|+|+++
T Consensus 271 l~gi--~~~la~~i~~~~----------g--~~~R~~~lGh~QRgg~p~ps~~Dr~la~~lG~~Av~~~~~G~~g~mv~~ 336 (419)
T 3hno_A 271 LGGV--APVVASMVKEGL----------G--LKYHWGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPTI 336 (419)
T ss_dssp -CCS--HHHHHHHHHHHH----------C--CCEEEEECTHHHHSCGGGCBHHHHHHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred cCcH--HHHHHHHHHHHh----------C--CceEEcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9996 456666665554 3 7899999999999998 8999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEecchHhhhhhcc
Q 006961 476 TNLKNPANKWRCGAAPITSMMTVKR 500 (623)
Q Consensus 476 ~n~~~~~~~w~~~~vPl~~~~~~e~ 500 (623)
+|++.++|+|++..+||.++++.+|
T Consensus 337 ~~~~~~~y~~~~~~vpl~~~~~~~k 361 (419)
T 3hno_A 337 ERISARPYQWKVGMAQLSQVANVEK 361 (419)
T ss_dssp EEEEC-CCEEEEEEEEHHHHSSCCC
T ss_pred ECCCCCccccEEEEeeHHHHhcccC
Confidence 9999999999999999999999766
No 4
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=5e-81 Score=654.75 Aligned_cols=302 Identities=23% Similarity=0.371 Sum_probs=274.4
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC-CCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 173 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k-~~t 173 (623)
+||||+||||||||||+||+++++++. +.+++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~~ 78 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAI--ANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGT-FLYSARYPEFAE 78 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHH--TTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSC-TTCCCCCGGGTS
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCc-ccccCCCCccCC
Confidence 699999999999999999999999976 46889999999999999999999999999999999996 99999988 668
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 253 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I 253 (623)
++++++++++|++++||+||+||||||+++|++|+++ +++|||||||||||++++| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~ai 150 (319)
T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTD--ATIGYDTACMTAMDAI 150 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCc--CCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999985 5899999999999999988 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 254 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 254 ~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
++++.+|.|++ +|||||||||+||||||+||||++||+|||||++ +++ +++++.|++|+++||+|+|||||
T Consensus 151 d~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~----~~~----~~i~~~i~~~~~~gk~~~iIvva 221 (319)
T 1zxx_A 151 DKIRDTASSHH-RVFIVNVMGRNCGDIAMRVGVACGADAIVIPERP----YDV----EEIANRLKQAQESGKDHGLVVVA 221 (319)
T ss_dssp HHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSC----CCH----HHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhcCCCEEEeCCCC----CCH----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 99988887765 7999999999999999999999999999999986 554 56677788898889999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 334 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 334 EGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
||+.+ ++.+++
T Consensus 222 EG~~~---------------------------------------------------------------------~~~l~~ 232 (319)
T 1zxx_A 222 EGVMT---------------------------------------------------------------------ADQFMA 232 (319)
T ss_dssp TTTCC---------------------------------------------------------------------HHHHHH
T ss_pred CCcCh---------------------------------------------------------------------HHHHHH
Confidence 99842 011233
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchH
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 493 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~ 493 (623)
+++++. | +++|+++|||+||||.||+|||.||++||..||+++++|.+|+|++++|.+ +..+||.
T Consensus 233 ~i~~~~------~--~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~~-------~~~~pl~ 297 (319)
T 1zxx_A 233 ELKKYG------D--FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGK-------VTSHDIL 297 (319)
T ss_dssp HHHHSS------C--CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEETTE-------EEEEEHH
T ss_pred HHHHhh------C--ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEEEHH
Confidence 333331 3 899999999999999999999999999999999999999999999999974 8999999
Q ss_pred hhhhhcc
Q 006961 494 SMMTVKR 500 (623)
Q Consensus 494 ~~~~~e~ 500 (623)
++++.+|
T Consensus 298 ~~~~~~k 304 (319)
T 1zxx_A 298 DLFDESH 304 (319)
T ss_dssp HHTTCCC
T ss_pred HHHhcCC
Confidence 9987544
No 5
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=8.2e-81 Score=653.37 Aligned_cols=301 Identities=23% Similarity=0.378 Sum_probs=273.7
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC-CCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 173 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k-~~t 173 (623)
+||||+||||||||||+||+++++++. +.+++||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~~ 79 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSAL--TEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGT-FLGSARFPEFRD 79 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHH--HTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSC-TTCCCCCGGGGS
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCC-eeccCCCCCCCC
Confidence 699999999999999999999999976 35789999999999999999999999999999999996 99999998 668
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 253 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I 253 (623)
++++++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||++++| +|||||||+++++++|
T Consensus 80 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~ai 151 (320)
T 1pfk_A 80 ENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTD--YTIGFFTALSTVVEAI 151 (320)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCc--CCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999984 5899999999999999988 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 254 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 254 ~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
++++.+|.|++ +|||||||||+||||||+||||++||+|||||++ +++ +++++.|++|+++||+|+|||||
T Consensus 152 d~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~----~~~----~~i~~~i~~~~~~gk~~~iIvva 222 (320)
T 1pfk_A 152 DRLRDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVE----FSR----EDLVNEIKAGIAKGKKHAIVAIT 222 (320)
T ss_dssp HHHHHHHHHHT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSC----CCH----HHHHHHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhcCCCEEEeCCCC----CCH----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 99998888886 6999999999999999999999999999999986 554 56677788888889999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 334 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 334 EGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
||+.. . +.|++.++
T Consensus 223 EG~~~--~---------------------------------------------------------------~~la~~i~- 236 (320)
T 1pfk_A 223 EHMCD--V---------------------------------------------------------------DELAHFIE- 236 (320)
T ss_dssp SSSSC--H---------------------------------------------------------------HHHHHHHH-
T ss_pred CCcch--H---------------------------------------------------------------HHHHHHHH-
Confidence 99842 0 11233333
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchH
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 493 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~ 493 (623)
++. + +++|.++|||+||||.||+|||.||++||..||+++++|.+|+|++++|.+ +..+||.
T Consensus 237 ---~~~------~--~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~~-------~~~~pl~ 298 (320)
T 1pfk_A 237 ---KET------G--RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQ-------LVHHDII 298 (320)
T ss_dssp ---HHH------S--SCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEEEEETTE-------EEEEEHH
T ss_pred ---HHh------C--CeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEEEHH
Confidence 332 3 899999999999999999999999999999999999999999999999974 8999999
Q ss_pred hhh-hhc
Q 006961 494 SMM-TVK 499 (623)
Q Consensus 494 ~~~-~~e 499 (623)
+++ +.+
T Consensus 299 ~~~~~~~ 305 (320)
T 1pfk_A 299 DAIENMK 305 (320)
T ss_dssp HHHHHCC
T ss_pred HHHhhCC
Confidence 998 643
No 6
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=7.1e-78 Score=632.13 Aligned_cols=302 Identities=25% Similarity=0.370 Sum_probs=271.7
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC-CCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ-IRT 173 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k-~~t 173 (623)
+|||||||||||||||+||+++++++. +++.+||||++||+||+++++++|+++.++.++++||| +|||+|.+ +++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~--~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt-~lgtsR~~~~~~ 78 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAI--YHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGT-KLYTARCPEFKT 78 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSC-TTCCCCCHHHHS
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCC-ccccCCCCcccc
Confidence 699999999999999999999999875 56889999999999999999999999999999999997 99999975 678
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHH
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 253 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I 253 (623)
+|++++++++|++++||+||+||||||+++|++|+|+ .++||||||||||||+++| +|||||||+++++++|
T Consensus 79 ~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td--~t~GfdTA~~~~~~ai 150 (319)
T 4a3s_A 79 VEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTD--FTIGFDTALNTVIDAI 150 (319)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCC--CCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999985 4899999999999999988 9999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 006961 254 SNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333 (623)
Q Consensus 254 ~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVIvVs 333 (623)
++++.+|.|++ +|||||+|||+|||||+++|||++||+|||||++ +++ +++++.|+++.++|++|+|||||
T Consensus 151 ~~i~~~a~s~~-rv~ivEvMGR~aG~lA~~a~la~ga~~iliPE~~----~~~----~~~~~~i~~~~~~g~~~~iivva 221 (319)
T 4a3s_A 151 DKIRDTATSHE-RTYVIEVMGRHAGDIALWAGLAGGAESILIPEAD----YDM----HEIIARLKRGHERGKKHSIIIVA 221 (319)
T ss_dssp HHHHHHHHHHT-CEEEEEECCTTCCHHHHHHHHHHTCSEEEBTTBC----CCH----HHHHHHHHHHHTTTCCCEEEEEE
T ss_pred HHHHhhhhccC-CeEEEEeCCcchhHHHHHHHhccCCCEEEecCCC----CCH----HHHHHHHHHHHHcCCCceEEEEE
Confidence 99998888776 5899999999999999999999999999999986 454 45566678888889999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHH
Q 006961 334 EGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEV 413 (623)
Q Consensus 334 EGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~lV~~ 413 (623)
||+.... .+++.++
T Consensus 222 EG~~~~~-----------------------------------------------------------------~~~~~~~- 235 (319)
T 4a3s_A 222 EGVGSGV-----------------------------------------------------------------EFGKRIE- 235 (319)
T ss_dssp TTTCCHH-----------------------------------------------------------------HHHHHHH-
T ss_pred CCCCcch-----------------------------------------------------------------HHHHHHH-
Confidence 9996420 0122222
Q ss_pred HHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEEecchH
Q 006961 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 493 (623)
Q Consensus 414 el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~vPl~ 493 (623)
++. | +++|...|||.||||.||+||+.||++||..||+++++|.+|+|++++|.+ +..+||.
T Consensus 236 ---~~~------g--~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~mv~~~~~~-------~~~~pl~ 297 (319)
T 4a3s_A 236 ---EET------N--LETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGIQNNK-------LVDHDII 297 (319)
T ss_dssp ---HHH------C--CCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSEEEEEETTE-------EEEEEHH
T ss_pred ---HhC------C--ceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEEeHH
Confidence 222 3 789999999999999999999999999999999999999999999999985 8889999
Q ss_pred hhhhhcc
Q 006961 494 SMMTVKR 500 (623)
Q Consensus 494 ~~~~~e~ 500 (623)
++++.+|
T Consensus 298 ~~~~~~k 304 (319)
T 4a3s_A 298 EILETKH 304 (319)
T ss_dssp HHSSSCC
T ss_pred HHHhccC
Confidence 9987544
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=3.3e-73 Score=649.03 Aligned_cols=321 Identities=19% Similarity=0.273 Sum_probs=285.7
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcC--CeeecCHhHHhchhhcCCcccccCcCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GG~~~lGS~R~ 169 (623)
.+.+||||+||||||||||+||+++++.+. +.+.+||||++||+||+++ ++++|++++|+.|+++||| +|||+|.
T Consensus 13 ~~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGT-iLGSsR~ 89 (762)
T 3o8l_A 13 GVGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGT-VIGSARC 89 (762)
T ss_dssp TSSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSC-SSCCCCC
T ss_pred ccCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCc-cccCCCC
Confidence 456899999999999999999999999765 5689999999999999999 8999999999999999996 9999999
Q ss_pred C-CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH-----------------HHhcCCCCeEEEeeecccCCC
Q 006961 170 Q-IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGDL 231 (623)
Q Consensus 170 k-~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~-----------------~~~~g~~i~VIGVPKTIDNDl 231 (623)
+ +++++++++++++|++++||+||+||||||+++|+.|+++ +++++.+++|||||||||||+
T Consensus 90 ~~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl 169 (762)
T 3o8l_A 90 KDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDF 169 (762)
T ss_dssp CGGGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCC
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCC
Confidence 8 5788999999999999999999999999999999988654 345567899999999999999
Q ss_pred CCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHH
Q 006961 232 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTK 311 (623)
Q Consensus 232 ~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~ 311 (623)
+++| +|||||||+++++++|++|+.+|.|++| +||||||||+||||||++|||++||+|||||+++. + +.++
T Consensus 170 ~gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~R-v~iVEvMGR~aG~LAl~aglA~gad~ilIPE~p~~----~-~~~~ 241 (762)
T 3o8l_A 170 CGTD--MTIGTDSALHRITEIVDAITTTAQSHQR-TFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPD----D-NWED 241 (762)
T ss_dssp SSCS--CCBTHHHHHHHHHHHHHHHHTTCCSSCC-EEEEEECCSSCCHHHHHHHHHHTCSBCCCTTSCCC----S-SCHH
T ss_pred CCCc--CCcCchhHHHHHHHHHHHHHHhhhcCcc-EEEEEeCCcchhHHHHHHHHhcCCCEEEecCCCCC----c-chHH
Confidence 9998 9999999999999999999999998875 79999999999999999999999999999998743 2 2368
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCC
Q 006961 312 QICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPE 391 (623)
Q Consensus 312 ~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD 391 (623)
++++.|++|.++||+|+||+||||+.+
T Consensus 242 ~~~~~i~~~~~~gk~~~iVvVaEGa~d----------------------------------------------------- 268 (762)
T 3o8l_A 242 HLCRRLSETRTRGSRLNIIIVAEGAID----------------------------------------------------- 268 (762)
T ss_dssp HHHHHHHHHHHTTCSCCBBCEETTCCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCccC-----------------------------------------------------
Confidence 889999999999999999999999964
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---
Q 006961 392 SDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL--- 468 (623)
Q Consensus 392 ~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~--- 468 (623)
.+|++..+ +.| ++.+++++ | +++|...|||+||||.||+|||.||+.||..||+++++|.
T Consensus 269 ~~G~~i~~-----~~l----~~~i~~~~------g--~~~R~tvLGh~QRgg~Psa~Dr~lat~lG~~AV~~~~~g~~~~ 331 (762)
T 3o8l_A 269 RNGKPITS-----EGV----KDLVVRRL------G--YDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPDT 331 (762)
T ss_dssp SSSCCCCH-----HHH----HHHHHHHT------C--CCEEEECCCSSTTCSCCCHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred CCCCCcHH-----HHH----HHHHHHHh------C--CCcceeecCccccCCCCChHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 24444321 233 44444443 3 8899999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCceeEEecchHhhhhhcc
Q 006961 469 NGYMATVTNLKNPANKWRCGAAPITSMMTVKR 500 (623)
Q Consensus 469 tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~ 500 (623)
+|+|+++++.+ +..+||.++++..+
T Consensus 332 ~~~~v~~~~~~-------i~~~Pl~e~~~~~k 356 (762)
T 3o8l_A 332 PACVVSLSGNQ-------AVRLPLMECVQVTK 356 (762)
T ss_dssp CCEEEEEETTE-------EEEEEHHHHHHHHH
T ss_pred ceEEEEEECCE-------EEEEEHHHHHhccC
Confidence 89999999985 89999999887644
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-72 Score=640.98 Aligned_cols=319 Identities=18% Similarity=0.245 Sum_probs=284.3
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCC---eeecCHhHHhchhhcCCcccccCcCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---TLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~---~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
++||||+||||||||||+||+++++++. +.+.+||||++||+||++++ +.+|++++|+.|+++||| +|||+|.+
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 79 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAI--FKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGT-NIGTARCM 79 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 5799999999999999999999999876 35789999999999999996 789999999999999997 99999987
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHH-----------------HhcCCCCeEEEeeecccCCCC
Q 006961 171 -IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-----------------AEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 171 -~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~-----------------~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+.+++.+.+++++|++++||+||+||||||+++|++|++++ .+++.+++|||||||||||++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~ 159 (766)
T 3o8o_B 80 EFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMS 159 (766)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCC
Confidence 45778899999999999999999999999999999987643 334567999999999999999
Q ss_pred CCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHH
Q 006961 233 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQ 312 (623)
Q Consensus 233 ~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~ 312 (623)
++| +|||||||+++++++|++|+.+|.|++| +||||||||+||||||++|||++||+|||||++ ++++++.++
T Consensus 160 gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~R-vfvVEvMGR~aG~LAl~aglA~gAd~ilIPE~p----~~~~~~~~~ 232 (766)
T 3o8o_B 160 TTD--ATIGAYSALDRICKAIDYVEATANSHSR-AFVVEVMGRNCGWLALLAGIATSADYIFIPEKP----ATSSEWQDQ 232 (766)
T ss_dssp TCS--CCBTHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHHTCSEEECTTCC----CCTTHHHHH
T ss_pred CCC--CCCChhHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhcCCCEEEccCCC----CChHHHHHH
Confidence 998 9999999999999999999999998875 799999999999999999999999999999986 677888999
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCC
Q 006961 313 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPES 392 (623)
Q Consensus 313 I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~ 392 (623)
|++.+++|..+||+|+|||||||+.+..
T Consensus 233 v~~~i~~~~~~gk~~~IVvVaEGa~~~~---------------------------------------------------- 260 (766)
T 3o8o_B 233 MCDIVSKHRSRGKRTTIVVVAEGAIAAD---------------------------------------------------- 260 (766)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTCBCTT----------------------------------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCccccc----------------------------------------------------
Confidence 9999999999999999999999997531
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---
Q 006961 393 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN--- 469 (623)
Q Consensus 393 ~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~t--- 469 (623)
|+.. + ++.++++++++. | +++|...|||.||||.||+|||.+|++||..||+++++|.+
T Consensus 261 -~~~~-----~----~~~l~~~i~~~~------g--~~~R~tvLGh~QRGG~Psa~DR~lAt~~G~~AV~~~~~g~~~~~ 322 (766)
T 3o8o_B 261 -LTPI-----S----PSDVHKVLVDRL------G--LDTRITTLGHVQRGGTAVAYDRILATLQGLEAVNAVLESTPDTP 322 (766)
T ss_dssp -SCBC-----C----HHHHHHHHHHTT------C--CCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred -CCcc-----h----HHHHHHHHHHHh------C--CceeEcccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1110 1 123344444442 4 89999999999999999999999999999999999999987
Q ss_pred ceEEEEecCCCCCCceeEEecchHhhhhhc
Q 006961 470 GYMATVTNLKNPANKWRCGAAPITSMMTVK 499 (623)
Q Consensus 470 G~mv~i~n~~~~~~~w~~~~vPl~~~~~~e 499 (623)
|+|+++++++ +..+||.+.+...
T Consensus 323 ~~mv~~~~~~-------i~~~pl~~~~~~~ 345 (766)
T 3o8o_B 323 SPLIAVNENK-------IVRKPLMESVKLT 345 (766)
T ss_dssp CEEEEESSSC-------EEEEEHHHHHHHH
T ss_pred ceEEEEECCE-------EEEEEHHHHHhcc
Confidence 8999999987 8899999987643
No 9
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-72 Score=640.34 Aligned_cols=319 Identities=17% Similarity=0.247 Sum_probs=282.3
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcC--CeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
+++||||+||||||||||+||+++++++. +.+++||||++||+||+++ ++.+|++++|+.|+++||| +|||+|.+
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 80 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGI--HFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGT-LIGTARSM 80 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 45899999999999999999999999886 4578999999999999998 6999999999999999997 99999987
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHH-----------------HhcCCCCeEEEeeecccCCCC
Q 006961 171 -IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-----------------AEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 171 -~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~-----------------~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+.+++++.+++++|++++||+||+||||||+++|+.|++++ .+++.+++|||||||||||++
T Consensus 81 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 81 EFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp GGGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 46788999999999999999999999999999999887532 234567999999999999999
Q ss_pred CCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHH
Q 006961 233 NQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQ 312 (623)
Q Consensus 233 ~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~ 312 (623)
++| +|||||||+++++++|++|+.+|.|++| |||||||||+||||||++|||++||+|||||++ ++++++.++
T Consensus 161 gTD--~TiGfdTAl~~i~eaid~i~~tA~Sh~R-vfvVEVMGR~aG~LAl~agLA~gAd~ilIPE~p----~~~~~~~~~ 233 (787)
T 3o8o_A 161 GTD--STIGAYSALERICEMVDYIDATAKSHSR-AFVVEVMGRHCGWLALMAGIATGADYIFIPERA----VPHGKWQDE 233 (787)
T ss_dssp TSS--CCEEHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHTTCSEEECGGGC----BCTTTHHHH
T ss_pred CCC--CCCCcHHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhhCCCEEEeCCCC----CChHHHHHH
Confidence 998 9999999999999999999999998765 899999999999999999999999999999986 567778899
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCC
Q 006961 313 ICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPES 392 (623)
Q Consensus 313 I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~ 392 (623)
|++.+++|..+||+|+|||||||+.+..
T Consensus 234 v~~~i~~~~~~gk~~~IVvVaEGa~~~~---------------------------------------------------- 261 (787)
T 3o8o_A 234 LKEVCQRHRSKGRRNNTIIVAEGALDDQ---------------------------------------------------- 261 (787)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTCBBTT----------------------------------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCCcccc----------------------------------------------------
Confidence 9999999999999999999999997531
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---
Q 006961 393 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN--- 469 (623)
Q Consensus 393 ~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~t--- 469 (623)
|+.. + ++.+++.+++ . | +++|...|||.||||.||+|||.+|++||..||+++++|.+
T Consensus 262 -~~~~-----~----~~~~~~~i~~-~------g--~~~R~tvLGh~QRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~~ 322 (787)
T 3o8o_A 262 -LNPV-----T----ANDVKDALIE-L------G--LDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEFTPETP 322 (787)
T ss_dssp -SCBC-----C----HHHHHHHHHH-H------T--CCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHTCCSSCC
T ss_pred -Ccch-----h----HHHHHHHHHH-h------C--CcceeeccCHhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1110 1 1123334433 2 3 89999999999999999999999999999999999999997
Q ss_pred ceEEEEecCCCCCCceeEEecchHhhhhhc
Q 006961 470 GYMATVTNLKNPANKWRCGAAPITSMMTVK 499 (623)
Q Consensus 470 G~mv~i~n~~~~~~~w~~~~vPl~~~~~~e 499 (623)
|+|+++++.+ +..+||.+.....
T Consensus 323 ~~mVg~~~~~-------i~~~pl~~~~~~~ 345 (787)
T 3o8o_A 323 SPLIGILENK-------IIRMPLVESVKLT 345 (787)
T ss_dssp CEEEEESSSS-------EEEEEHHHHHHHH
T ss_pred CeEEEEECCE-------EEEEEHHHHHhcc
Confidence 7999999987 8899999976543
No 10
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=6e-72 Score=638.63 Aligned_cols=315 Identities=19% Similarity=0.242 Sum_probs=282.0
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+++||||+||||||||||+||+++++++.. .+++||||++||+||+++++++|++++|+.|+++||| +|||+|.++
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~~ 474 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGS-KLGSKRTLP 474 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSC-SSCEECCCS
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCc-eeecCCCCc
Confidence 3568999999999999999999999998863 4799999999999999999999999999999999997 999999876
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-CCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHH
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 250 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g-~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s 250 (623)
++++++++++|++++||+||+||||||+++|.+|++++.+.+ .+++|||||||||||++++| +|||||||+++++
T Consensus 475 --~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 475 --KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSD--FSVGADTALNTIC 550 (762)
T ss_dssp --GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCc--CCCChHHHHHHHH
Confidence 578999999999999999999999999999999999988764 47999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 006961 251 QLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVI 330 (623)
Q Consensus 251 ~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~~gk~~gVI 330 (623)
++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||++ ++++++.+.|+. +.+|.+++++|++|
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~gad~ilIPE~~----~~l~~~~~~i~~-~~~r~~~~~~~~iV 625 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEEP----FTIRDLQANVEH-LVQKMKTTVKRGLV 625 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHTTCSEEECSSSC----CCHHHHHHHHHH-HHHHHTSSCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEECCCC----CCHHHHHHHHHH-HHHHHhcCCCceEE
Confidence 9999999999877788999999999999999999999999999999986 788998887776 56788889999999
Q ss_pred EEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHH
Q 006961 331 LLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHL 410 (623)
Q Consensus 331 vVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~lL~~l 410 (623)
||+||+..... .++++++
T Consensus 626 vvaEga~~~~~--------------------------------------------------------------~~~~~~~ 643 (762)
T 3o8l_A 626 LRNEKCNENYT--------------------------------------------------------------TDFIFNL 643 (762)
T ss_dssp EEETTSCSSSC--------------------------------------------------------------HHHHHHH
T ss_pred EEECCCCccch--------------------------------------------------------------HHHHHHH
Confidence 99999964211 1112222
Q ss_pred HHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC---------------CCceEEEE
Q 006961 411 VEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAG---------------LNGYMATV 475 (623)
Q Consensus 411 V~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G---------------~tG~mv~i 475 (623)
+++ ..+ .| |++|...|||.||||.||+|||.+|++||..|++++.+| .+|+|+++
T Consensus 644 ~~~----~~~----~~--~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~~~~g~~~~~~~~~~~~vg~ 713 (762)
T 3o8l_A 644 YSE----EGK----GI--FDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDSGCVLGM 713 (762)
T ss_dssp HHH----HTT----TT--CEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTBCSSSBCCCSSTTEEEEEE
T ss_pred HHh----hcc----CC--ceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCceEEEEE
Confidence 222 211 13 999999999999999999999999999999999999997 78999999
Q ss_pred ecCCCCCCceeEEecchHhhhh
Q 006961 476 TNLKNPANKWRCGAAPITSMMT 497 (623)
Q Consensus 476 ~n~~~~~~~w~~~~vPl~~~~~ 497 (623)
++.+ +..+||.++.+
T Consensus 714 ~~~~-------i~~~pl~e~~~ 728 (762)
T 3o8l_A 714 RKRA-------LVFQPVTELQN 728 (762)
T ss_dssp ETTE-------EEEEEHHHHGG
T ss_pred ECCE-------EEEEEHHHHhh
Confidence 9986 89999999876
No 11
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=6.7e-72 Score=644.89 Aligned_cols=322 Identities=18% Similarity=0.253 Sum_probs=283.7
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCC---eeecCHhHHhchhhcCCcccccCcC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---TLEVTKEILSTYKNQGGYDMLGRTK 168 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~---~~eLt~~~v~~~~n~GG~~~lGS~R 168 (623)
..++||||+||||||||||+||+++++.+. +.+.+||||++||+||++++ +.+|++++|+.|+++||| +|||+|
T Consensus 179 ~~~krIgIlTsGGdaPGmNAaIRaVVr~a~--~~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGT-iLGSsR 255 (941)
T 3opy_B 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGI--YKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGT-NIGTAR 255 (941)
T ss_dssp -CCCCEEEEECSSCCTTHHHHHHHHHHHHH--HTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSC-SSCCCC
T ss_pred ccCCEEEEEeeCcCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCc-eeccCC
Confidence 346899999999999999999999999876 45789999999999999986 789999999999999997 999999
Q ss_pred CCC-CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHH-----------------HHhcCCCCeEEEeeecccCC
Q 006961 169 DQI-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAET-----------------FAEAKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 169 ~k~-~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~-----------------~~~~g~~i~VIGVPKTIDND 230 (623)
.+. .+++.+.+++++|++++||+||+||||||+++|+.|+++ ..+++.+++|||||||||||
T Consensus 256 ~~~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDND 335 (941)
T 3opy_B 256 CKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDND 335 (941)
T ss_dssp CSGGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCC
Confidence 874 577889999999999999999999999999999988653 34456789999999999999
Q ss_pred CCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHH
Q 006961 231 LKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLT 310 (623)
Q Consensus 231 l~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv 310 (623)
++++| +|||||||+++++++|++|+.+|.|++| +||||||||+||||||++|||++||+|||||++ ++++++.
T Consensus 336 l~gTD--~TiGfdTAv~~i~eaId~I~~tA~Sh~R-vfvVEVMGR~aG~LAl~agLA~GAd~IlIPE~p----~~~~~~~ 408 (941)
T 3opy_B 336 MSSTD--ATIGAFSSLDRICRAIDYIDATANSHSR-AFIVEVMGRHCGWLGLLAGLATSADYILIPEKP----ASSREWQ 408 (941)
T ss_dssp CSSCS--SCEEHHHHHHHHHHHHHHHHSCC-CCSE-EEEEECCCSSCCHHHHHHHHHTTCSEEECTTSC----CCSSCHH
T ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCCcccHHHHHHHHhcCCCEEEECCCC----CChHHHH
Confidence 99998 9999999999999999999999988764 899999999999999999999999999999986 5667788
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCC
Q 006961 311 KQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQP 390 (623)
Q Consensus 311 ~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~r 390 (623)
++|++.+++|..+||+|+|||||||+.+..
T Consensus 409 ~~v~~~i~~~~~~gk~~~IVVVAEGa~~~~-------------------------------------------------- 438 (941)
T 3opy_B 409 DQMCDIVGKHRARGKRKTIVIVAEGAISND-------------------------------------------------- 438 (941)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEECTTCBCTT--------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCccccc--------------------------------------------------
Confidence 999999999988999999999999997531
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC-
Q 006961 391 ESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN- 469 (623)
Q Consensus 391 D~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~t- 469 (623)
|+.. + ++.++++++++. | +++|...|||.||||.||+|||.||++||..||+++++|.+
T Consensus 439 ---~~~i-----~----~~~l~~~i~~~~------g--~d~R~tvLGhiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~ 498 (941)
T 3opy_B 439 ---LSPI-----S----CDQVKDVLVNRL------G--LDTRVTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLECDAD 498 (941)
T ss_dssp ---CCBC-----C----HHHHHHHHHHTS------C--CEEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ---CCcc-----h----HHHHHHHHHHHh------C--CceeecccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCC
Confidence 1111 1 223344554442 4 89999999999999999999999999999999999999997
Q ss_pred --ceEEEEecCCCCCCceeEEecchHhhhhhcc
Q 006961 470 --GYMATVTNLKNPANKWRCGAAPITSMMTVKR 500 (623)
Q Consensus 470 --G~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~ 500 (623)
|+|+++++.+ +..+||.+.+...|
T Consensus 499 ~~g~mVg~~~~~-------iv~~Pl~e~v~~~k 524 (941)
T 3opy_B 499 TPSPMIAIKEDQ-------ITRVPLVDAVELTQ 524 (941)
T ss_dssp SCCEEEEESSSC-------EEEEEHHHHHHHHH
T ss_pred CCceEEEEECCE-------EEEEEHHHHHhccC
Confidence 7999999987 89999999876533
No 12
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.9e-71 Score=639.40 Aligned_cols=321 Identities=17% Similarity=0.226 Sum_probs=282.5
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcC--CeeecCHhHHhchhhcCCcccccCcCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~--~~~eLt~~~v~~~~n~GG~~~lGS~R~ 169 (623)
...+||||+||||||||||+||+++++++. +.+.+||||++||+||+++ ++.+|++++|+.|+++||| +|||+|.
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~--~~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGT-iLGTsR~ 284 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGI--FYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGT-IIGTARC 284 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHH--HTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSC-SSCCCCS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-cccCCCC
Confidence 446899999999999999999999999876 4578999999999999998 5899999999999999996 9999998
Q ss_pred C-CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHH-------H----------hcCCCCeEEEeeecccCCC
Q 006961 170 Q-IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF-------A----------EAKCPTKVVGVPVTLNGDL 231 (623)
Q Consensus 170 k-~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~-------~----------~~g~~i~VIGVPKTIDNDl 231 (623)
+ +++++++++++++|++++||+||+||||||+++|+.|++++ . +++.+++|||||||||||+
T Consensus 285 ~~f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl 364 (989)
T 3opy_A 285 KEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDM 364 (989)
T ss_dssp SSTTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCC
T ss_pred CcccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCC
Confidence 7 46788999999999999999999999999999999998643 2 2346799999999999999
Q ss_pred CCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHH
Q 006961 232 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTK 311 (623)
Q Consensus 232 ~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~ 311 (623)
+++| +|||||||+++++++|++|+.+|.|++ ++||||||||+||||||++|||++||+|||||++ ++++++.+
T Consensus 365 ~gTD--~TiGFdTAl~~i~eaId~I~~TA~Sh~-RvfVVEVMGR~aG~LAl~agLA~GAd~IlIPE~p----f~l~~~~~ 437 (989)
T 3opy_A 365 CGTD--STIGAYSSLERIIELVDYIDATAASHS-RAFVVEVMGRHCGWLGLMSGIATGADYIFIPERP----PSESNWKD 437 (989)
T ss_dssp TTCS--CCEEHHHHHHHHHHHHHHHHSSCCCTT-EEEEEECCCSSCTHHHHHHHHHHTCSEEECTTSC----CCTTTHHH
T ss_pred CCCC--CCCChhhHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCchhHHHHHHHHhcCCCEEEeCCCC----CChHHHHH
Confidence 9998 999999999999999999999998875 5899999999999999999999999999999987 56778889
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCC
Q 006961 312 QICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPE 391 (623)
Q Consensus 312 ~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD 391 (623)
+|++.+++|..+||+|+|||||||+.+..
T Consensus 438 ~l~~~i~k~~~~Gk~~~IVVVAEGa~~~~--------------------------------------------------- 466 (989)
T 3opy_A 438 DLKKVCLRHREKGRRKTTVIVAEGAIDDQ--------------------------------------------------- 466 (989)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTCBCTT---------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCccccc---------------------------------------------------
Confidence 99999999888999999999999997521
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 006961 392 SDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLN-- 469 (623)
Q Consensus 392 ~~Gn~~ls~I~te~lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~t-- 469 (623)
|+. + + ++.+++.+++ . | +++|..++||.||||.||+|||.||++||..||+++++|.+
T Consensus 467 --~~~----i-~----~~~l~~~l~~-~------G--~dtR~tvLGHiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~ 526 (989)
T 3opy_A 467 --LNP----I-T----SEEVKDVLVE-I------G--LDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTPAI 526 (989)
T ss_dssp --SCB----C-C----HHHHHHHHHT-T------T--CEEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred --ccc----c-h----HHHHHHHHHH-h------C--cchhhhhhhHHHcCCCCChhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 111 1 0 1123333432 1 4 89999999999999999999999999999999999999985
Q ss_pred -ceEEEEecCCCCCCceeEEecchHhhhhhcc
Q 006961 470 -GYMATVTNLKNPANKWRCGAAPITSMMTVKR 500 (623)
Q Consensus 470 -G~mv~i~n~~~~~~~w~~~~vPl~~~~~~e~ 500 (623)
|+|+++++.+ +..+||.+.....+
T Consensus 527 ~g~mVgl~~~~-------iv~vPl~e~v~~~k 551 (989)
T 3opy_A 527 PSPVISILENK-------IVRQPLVESVAQTK 551 (989)
T ss_dssp CCEEEEESSSS-------EEEEEHHHHHHHHH
T ss_pred CCeEEEEECCE-------EEEEEHHHHHhccC
Confidence 8999999987 89999999876433
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-69 Score=620.39 Aligned_cols=317 Identities=16% Similarity=0.207 Sum_probs=275.2
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhh-cCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~-~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
.+++||||+||||||||||+||+++++++. +.+++||||++||+||+ ++++++|+++.|+.|+++||| +|||+|.+
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt-~LGTsR~~ 467 (787)
T 3o8o_A 391 SDRLNIGIVHVGAPSAALNAATRAATLYCL--SHGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGS-EIGTNRSV 467 (787)
T ss_dssp SCCCEEEEEEESSCCSSHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-TTCCBCCC
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCc-eeccCCCC
Confidence 456899999999999999999999999876 35799999999999999 899999999999999999996 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-CCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g-~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
+. +++++++++|++++||+||+||||||+++|+.|++++.+.+ ++++||||||||||||+++| +|||||||++++
T Consensus 468 ~~--~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD--~t~GfdTA~~~~ 543 (787)
T 3o8o_A 468 AS--EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTE--YSLGVDTCLNAL 543 (787)
T ss_dssp GG--GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCS--CCBTHHHHHHHH
T ss_pred ch--hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCc--CCCCchHHHHHH
Confidence 63 36889999999999999999999999999999999865443 46999999999999999988 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHH-H--cCCC
Q 006961 250 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARA-E--QDKN 326 (623)
Q Consensus 250 s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~-~--~gk~ 326 (623)
+++|++|+.+|.|++++|||||||||+||||||+||||++||+|||||++ ++++++.+.|....+++. + ++++
T Consensus 544 ~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~iliPE~~----~~~~~~~~~i~~~~~~~~~~~g~~~~ 619 (787)
T 3o8o_A 544 VNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGAVSVYTPEKK----IDLASIREDITLLKENFRHDKGENRN 619 (787)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTTTCSEEECSSSC----CCHHHHHHHHHHHHHHHHHCCSCSSC
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhcCCCEEEeCCCC----CCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999888887788999999999999999999999999999999986 788888777765444322 1 3445
Q ss_pred eEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHH
Q 006961 327 HGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKL 406 (623)
Q Consensus 327 ~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~l 406 (623)
+.+|+++||+..... ...
T Consensus 620 ~~iivvaEg~~~~~~--------------------------------------------------------------~~~ 637 (787)
T 3o8o_A 620 GKLLVRNEQASSVYS--------------------------------------------------------------TQL 637 (787)
T ss_dssp CEEEEEETTSCSSSC--------------------------------------------------------------HHH
T ss_pred ceEEEEeCCccCCCC--------------------------------------------------------------HHH
Confidence 699999999853211 123
Q ss_pred HHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC------------------
Q 006961 407 LAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL------------------ 468 (623)
Q Consensus 407 L~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~------------------ 468 (623)
|++++++++ +. + |++|..+|||.||||.||+|||.+|++||..|++++++|.
T Consensus 638 la~~i~~~~----~~----~--~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~~~~~~~~~~~~~~~~~~~~~ 707 (787)
T 3o8o_A 638 LADIISEAS----KG----K--FGVRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRFKF 707 (787)
T ss_dssp HHHHHHHHH----TT----S--SEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHHHHTCC--------------
T ss_pred HHHHHHHHh----CC----C--ceeEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccccccc
Confidence 444444433 11 3 8999999999999999999999999999999999999876
Q ss_pred ---------------CceEEEEecCCCCCCceeEEecchHhhhhh
Q 006961 469 ---------------NGYMATVTNLKNPANKWRCGAAPITSMMTV 498 (623)
Q Consensus 469 ---------------tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~ 498 (623)
+++|+++++.+ +..+|+.++.+.
T Consensus 708 ~~~~~~~~~~~~~~~~~~~iG~~~~~-------i~~~p~~~~~~~ 745 (787)
T 3o8o_A 708 DTHGEKVPTVEHEDDSAAVICVNGSH-------VSFKPIANLWEN 745 (787)
T ss_dssp ------------CGGGEEEEEEETTE-------EEEEEHHHHTTS
T ss_pred ccccccccccccCCCceEEEEEECCE-------EEEeeHHHHHhh
Confidence 68999999986 889999998754
No 14
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.2e-69 Score=621.61 Aligned_cols=318 Identities=14% Similarity=0.210 Sum_probs=275.0
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhh-cCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~-~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
.+++||||+||||||||||+||+++++++. +.+++||||++||+||+ ++++++|++++|+.|+++||| +|||+|.+
T Consensus 569 ~~~~rIgIltsGGdapGmNaaIravv~~a~--~~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 645 (941)
T 3opy_B 569 EKRKKIAIINVGAPAGGMNSAVYSMATYCM--SRGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGS-EIGTNRTL 645 (941)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-SSCEECCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCc-EeccCCCC
Confidence 356899999999999999999999999876 34799999999999999 799999999999999999996 99999986
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-CCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
+. ++++++++++|++++||+||+||||||+++|..|+++..+. .++++|||||||||||++++| +|||||||++++
T Consensus 646 ~~-~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD--~TiGfdTA~~~i 722 (941)
T 3opy_B 646 PN-DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTE--YSLGSDTCLNSF 722 (941)
T ss_dssp TT-TSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCS--CCBTHHHHHHHH
T ss_pred cc-cchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCC--CCCChHHHHHHH
Confidence 53 34578899999999999999999999999999999876543 246999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHH----cCC
Q 006961 250 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE----QDK 325 (623)
Q Consensus 250 s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~----~gk 325 (623)
+++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||++ ++++++.+.|....+ ++. +++
T Consensus 723 ~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~GAd~ilIPE~~----~~l~~l~~~i~~l~~-~~~~~~g~~~ 797 (941)
T 3opy_B 723 MEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEG----ISLAQLEMDINSLKE-SFANDQGKTK 797 (941)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHHTCSEEECTTTC----CCHHHHHHHHHHHHH-HHHTCTTSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEeCCCC----CCHHHHHHHHHHHHH-HHhhhhcCCC
Confidence 99999999888887788999999999999999999999999999999986 788888777654433 332 456
Q ss_pred CeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHH
Q 006961 326 NHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK 405 (623)
Q Consensus 326 ~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~ 405 (623)
++.+|+++||+..... ..
T Consensus 798 ~~~iIvvaEga~~~~~--------------------------------------------------------------~~ 815 (941)
T 3opy_B 798 SGRLILKSENASKVLT--------------------------------------------------------------TE 815 (941)
T ss_dssp CCEEEEEEGGGCSSSC--------------------------------------------------------------HH
T ss_pred CceEEEEeCCccCCCC--------------------------------------------------------------HH
Confidence 7799999999864211 12
Q ss_pred HHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------
Q 006961 406 LLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL----------------- 468 (623)
Q Consensus 406 lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~----------------- 468 (623)
.|++++++++ +. | |++|..+|||.||||.||+|||.+|++||..||+++.+|.
T Consensus 816 ~la~~i~~~~----~~----g--~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~ 885 (941)
T 3opy_B 816 VISTIIDDEA----SG----R--FDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVSFIERHSDRCQTFKNSISFRQTDE 885 (941)
T ss_dssp HHHHHHHHHH----TT----S--SEEEEECCCTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCHH
T ss_pred HHHHHHHHHh----CC----C--ceeEEccccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccc
Confidence 2444554443 11 3 8999999999999999999999999999999999999998
Q ss_pred ---CceEEEEecCCCCCCceeEEecchHhhhhhc
Q 006961 469 ---NGYMATVTNLKNPANKWRCGAAPITSMMTVK 499 (623)
Q Consensus 469 ---tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~e 499 (623)
+|+|+++++.+ +..+|+.++.+.+
T Consensus 886 ~~~~~~~vG~~~~~-------i~~~pi~e~~~~~ 912 (941)
T 3opy_B 886 ITSTAVVLGIHKSQ-------LRFTPIRQLYDFE 912 (941)
T ss_dssp HHTTEEEEEECC-C-------EEEEEHHHHHHTS
T ss_pred CCCceEEEEEECCE-------EEEEEHHHHHhhc
Confidence 89999999987 8999999987543
No 15
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-69 Score=613.68 Aligned_cols=317 Identities=17% Similarity=0.205 Sum_probs=274.8
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhc-CCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA-QKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~-~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
.+.+||||+||||||||||+||+++++++.. .+++||||++||+||++ +++.+|++++|+.|+++||| +|||+|.+
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~ 467 (766)
T 3o8o_B 391 DKRLKIAIVNVGAPAGGINSAVYSMATYCMS--QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGS-EIGTNRVT 467 (766)
T ss_dssp SCCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSC-TTCCCCCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCc-eEccCCCC
Confidence 3458999999999999999999999998763 47899999999999997 78999999999999999996 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-CCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g-~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
+. .+++++++++|++++||+||+||||||+++|+.|+++..+.+ .+++||||||||||||+++| +|||||||++++
T Consensus 468 ~~-~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~T~GfdTA~~~~ 544 (766)
T 3o8o_B 468 PE-EADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTE--YSLGSDTALNAL 544 (766)
T ss_dssp GG-GGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCS--CCBTHHHHHHHH
T ss_pred Cc-cchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCC--CCCChhHHHHHH
Confidence 53 346789999999999999999999999999999998654332 46999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHH----cCC
Q 006961 250 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE----QDK 325 (623)
Q Consensus 250 s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~----~gk 325 (623)
+++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||++ ++++++.+.|....+ ++. +++
T Consensus 545 ~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~ilIPE~~----~~~~~~~~~i~~~~~-~~~~~~~~~~ 619 (766)
T 3o8o_B 545 MEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEG----ISLEQLSEDIEYLAQ-SFEKAEGRGR 619 (766)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHHTCSEEECTTTC----CCHHHHHHHHHHHHH-HHHHHTTCTT
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhhCCCEEEeCCCC----CCHHHHHHHHHHHHH-HHhhhhccCC
Confidence 99999999988887778999999999999999999999999999999986 678887776654433 332 457
Q ss_pred CeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHH
Q 006961 326 NHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK 405 (623)
Q Consensus 326 ~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~ 405 (623)
++.+|+++||...... ..
T Consensus 620 ~~~iivvaEg~~~~~~--------------------------------------------------------------~~ 637 (766)
T 3o8o_B 620 FGKLILKSTNASKALS--------------------------------------------------------------AT 637 (766)
T ss_dssp CCEEEEEEGGGCSSCC--------------------------------------------------------------HH
T ss_pred CceEEEEeCCcCCCCc--------------------------------------------------------------HH
Confidence 8899999999753211 12
Q ss_pred HHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------
Q 006961 406 LLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL----------------- 468 (623)
Q Consensus 406 lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~----------------- 468 (623)
.|++++++++ +. | |++|..+|||.||||.||+|||.+|++||..|++++++|.
T Consensus 638 ~la~~i~~~~----~~----~--~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~ 707 (766)
T 3o8o_B 638 KLAEVITAEA----DG----R--FDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADD 707 (766)
T ss_dssp HHHHHHHHHH----TT----S--CEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHSSSSSTTCCCC
T ss_pred HHHHHHHHHh----CC----C--ceEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccc
Confidence 2444444432 11 3 8999999999999999999999999999999999999999
Q ss_pred -----CceEEEEecCCCCCCceeEEecchHhhhhh
Q 006961 469 -----NGYMATVTNLKNPANKWRCGAAPITSMMTV 498 (623)
Q Consensus 469 -----tG~mv~i~n~~~~~~~w~~~~vPl~~~~~~ 498 (623)
+++|+++++.+ +..+|+.++.+.
T Consensus 708 ~~~~~~~~~vG~~~~~-------i~~~pi~~~~~~ 735 (766)
T 3o8o_B 708 KTISDTAAVVGVKGSH-------VVYNSIRQLYDY 735 (766)
T ss_dssp HHHHTTSEEEECSSSC-------CEEEEHHHHHHH
T ss_pred ccCCCceEEEEEECCE-------EEEEeHHHHHhh
Confidence 89999999987 888999998754
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=7.7e-68 Score=609.44 Aligned_cols=293 Identities=16% Similarity=0.189 Sum_probs=253.5
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhh-cCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~-~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
.+++||||++|||||||||+||+++++++. +.+++||||++||+||+ ++++++|+++.|+.|+++||| +|||+|.+
T Consensus 596 ~~~~rIgIltsGGdaPGmNAaIravV~~a~--~~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 672 (989)
T 3opy_A 596 SSRLNIAIIHVGAPTSALNPATRVATLNSL--AKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGS-EIGTNRSL 672 (989)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSC-SSCCBCCC
T ss_pred cCCceEEEEecCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCc-EeccCCCC
Confidence 356899999999999999999999999876 45799999999999999 999999999999999999996 99999986
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC-CCCeEEEeeecccCCCCCCCCCCCcChhhHHHHH
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK-CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVN 249 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g-~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~ 249 (623)
. .+++++++++|++++||+||+||||||+++|+.|++++.+.+ ++|+||||||||||||+++| +|||||||++++
T Consensus 673 ~--~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD--~TiGFdTAvn~~ 748 (989)
T 3opy_A 673 P--SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTE--YSLGSDTCLNTL 748 (989)
T ss_dssp G--GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCS--CCBTHHHHHHHH
T ss_pred c--hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCc--CCCChHHHHHHH
Confidence 4 357899999999999999999999999999999999765432 46999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEECCcchhccCCHHHHHHHHHHHHHHHHH--cC--C
Q 006961 250 SQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE--QD--K 325 (623)
Q Consensus 250 s~~I~ni~~da~S~~k~~~fVevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~tL~~iv~~I~~~I~~R~~--~g--k 325 (623)
+++|++|+.+|.|++++|||||||||+|||||+++|||++||+|||||++ ++++++.+.|.... +|+. +| +
T Consensus 749 ~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~GAd~ilIPE~~----f~l~~l~~~i~~l~-~~~~~~~g~~~ 823 (989)
T 3opy_A 749 SGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGALAVYTPENP----INLQTVQEDIELLT-RTYEEDDGKNR 823 (989)
T ss_dssp HHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHHTCSCEECTTSC----CCHHHHHHHHHHHH-HHHTTCC---C
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhcCCCEEEeCCCC----CCHHHHHHHHHHHH-HHHHHhccCCc
Confidence 99999999999887778999999999999999999999999999999986 78888777665433 3443 33 5
Q ss_pred CeEEEEEeCCCCCCChhHHHHHHHHHHhhhcCCCCccccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHH
Q 006961 326 NHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK 405 (623)
Q Consensus 326 ~~gVIvVsEGl~~~ipe~~~li~el~~~~~~~~~~~~~~~~ls~~s~~lf~~lp~~i~~~l~~~rD~~Gn~~ls~I~te~ 405 (623)
++++||++||+.....
T Consensus 824 ~~~IIvvaEga~~~~~---------------------------------------------------------------- 839 (989)
T 3opy_A 824 SGKIFIHNEKASKVYT---------------------------------------------------------------- 839 (989)
T ss_dssp CCEEEEEESSSCSSSC----------------------------------------------------------------
T ss_pred cceEEEEeCCCcCCCC----------------------------------------------------------------
Confidence 6789999999864211
Q ss_pred HHHHHHHHHHHHHhhccccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 006961 406 LLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGL 468 (623)
Q Consensus 406 lL~~lV~~el~~~~~~g~y~g~~f~~~~~~lGY~~R~~~PS~fD~~~a~~LG~~Av~li~~G~ 468 (623)
++.++++++++.+. | |++|..+|||.||||.||+|||.+|++||..|++++.++.
T Consensus 840 --~~~la~~i~e~~~~----~--~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~l~~~~ 894 (989)
T 3opy_A 840 --TDLIAAIIGEAGKG----R--FESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDAN 894 (989)
T ss_dssp --HHHHHHHHHHTTTT----T--SCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHHHTCGG
T ss_pred --HHHHHHHHHHhcCC----C--ceeEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 11233444444221 2 8999999999999999999999999999999999999876
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=93.40 E-value=0.098 Score=53.22 Aligned_cols=89 Identities=21% Similarity=0.090 Sum_probs=51.6
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
+||+|+.-.+ .+.....+..+.+.+.+ .+.+++.......++- ..|. ... ..
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~--~g~~v~~~~~~~~~~~-----------------~~~~-------~~~-~~ 57 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD--QGYEVIVEQQIAHELQ-----------------LKNV-------PTG-TL 57 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH--TTCEEEEEHHHHHHTT-----------------CSSC-------CEE-CH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH--CCCEEEEecchhhhcc-----------------cccc-------ccc-ch
Confidence 6899999866 47778888888888874 3566665543322210 0111 001 11
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
+ . ...+.|.+|++|||||+..|+... . +.+++++|||
T Consensus 58 ~-------~-~~~~~D~vi~~GGDGT~l~a~~~~---~--~~~~P~lGI~ 94 (292)
T 2an1_A 58 A-------E-IGQQADLAVVVGGDGNMLGAARTL---A--RYDINVIGIN 94 (292)
T ss_dssp H-------H-HHHHCSEEEECSCHHHHHHHHHHH---T--TSSCEEEEBC
T ss_pred h-------h-cccCCCEEEEEcCcHHHHHHHHHh---h--cCCCCEEEEE
Confidence 1 1 224689999999999999877543 2 2248999998
No 18
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=88.67 E-value=15 Score=36.27 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=67.8
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
+.+|||++..-..|-...++.|+-+.++.. +.++.-+ . +. .+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~--------------------------------~-~~---~~ 43 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFVQ--------------------------------S-AN---GN 43 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--SCEEEEE--------------------------------E-CT---TC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEE--------------------------------C-CC---CC
Confidence 468999999888899999999999888743 3322210 0 10 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.....++.+...++|++|+.+.+.+... ...+.+.+.| ++||.+ |++.....++.++++|-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 106 (313)
T 3m9w_A 44 EETQMSQIENMINRGVDVLVIIPYNGQVLS--NVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDN 106 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSSTTSCH--HHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCH
Confidence 344556788888999999999998765311 1223333344 788754 66665555445788774
No 19
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=88.22 E-value=0.37 Score=48.74 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcC-------CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 176 QVNAALTACKNLN-------LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 176 ~~~~i~~~l~~~~-------Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
-.+++.+.|++.+ .|.+|++|||||+-.|+... .....+++|+|||-
T Consensus 16 ~~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~---~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 16 LRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQY---EERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHT---GGGTTTCEEEEEES
T ss_pred HHHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHH---hhcCCCCCEEEEeC
Confidence 3445555566654 59999999999999877543 22212589999983
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=83.31 E-value=35 Score=33.18 Aligned_cols=132 Identities=11% Similarity=-0.013 Sum_probs=76.3
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+.++||+++.....|=...++.|+-+.+++. +.++.-+ ..+. .
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~--------------------------------~~~~---~ 45 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQAL--NVTVEYR--------------------------------GAAQ---Y 45 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHH--TCEEEEE--------------------------------ECSS---S
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHc--CCEEEEe--------------------------------CCCc---C
Confidence 4579999999999999999999999888753 2332211 1111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 252 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~ 252 (623)
+.+...+.++.+...++|++|+.+.+.+... ...+.+.+.+ ++||.+ |++.++...-.++++|-. +....+
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~ 116 (305)
T 3g1w_A 46 DIQEQITVLEQAIAKNPAGIAISAIDPVELT--DTINKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNA 116 (305)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEECCSSTTTTH--HHHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH--HHHHHHHHCC--CcEEEE----CCCCCCCceeEEECcCHH-HHHHHH
Confidence 3445566788888999999999987765211 1122333344 788754 555554321267787753 222333
Q ss_pred HHHHHHHHhhccCceEEEE
Q 006961 253 ISNVCTDALSAEKYYYFIR 271 (623)
Q Consensus 253 I~ni~~da~S~~k~~~fVe 271 (623)
...+...... ++++.|+-
T Consensus 117 ~~~l~~~~~g-~~~i~~i~ 134 (305)
T 3g1w_A 117 AYKMAELLDG-EGEVAVIT 134 (305)
T ss_dssp HHHHHHHTTT-CEEEEEEE
T ss_pred HHHHHHHhCC-CcEEEEEe
Confidence 3333322222 34455655
No 21
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=83.20 E-value=0.47 Score=48.59 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=38.4
Q ss_pred CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH--HHHHHHHHHHHH
Q 006961 188 NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC--KVNSQLISNVCT 258 (623)
Q Consensus 188 ~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~--~~~s~~I~ni~~ 258 (623)
+.|.+|++|||||+-.|+.... +. ++|+||.. -++||-|.. +.+.+.+..+..
T Consensus 68 ~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~------------G~lGFLt~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 68 NFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT------------GRVGLLTHASPENFEVELKKAVE 122 (278)
T ss_dssp GSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC------------SSSCTTCCBBTTBCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC------------CCCccccccCHHHHHHHHHHHHh
Confidence 6799999999999987775421 33 89999983 278888765 445566666654
No 22
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=77.47 E-value=43 Score=32.28 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=66.4
Q ss_pred CCceEEEEEecCC-CCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 92 HPAIRVGIVFCGR-QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 92 ~~~~~IgIv~sGG-~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
.+..+|||++..- ..|=...++.|+-+.+.+.. +..+. +......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-g~~~~---------------------------------~~~~~~~ 51 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-DFNIS---------------------------------ANITHYD 51 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-GGCEE---------------------------------EEEEEEC
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-hCCeE---------------------------------EEEEcCC
Confidence 3567999999887 88888999999988876430 11111 1000011
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
-.+.+.....++.+...++|++|+.+.+..... .+.+.+.+.+ ++||.+ |++++....-.++++|-
T Consensus 52 ~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 117 (304)
T 3gbv_A 52 PYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK--GFTDALNELG--IPYIYI----DSQIKDAPPLAFFGQNS 117 (304)
T ss_dssp SSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH--HHHHHHHHHT--CCEEEE----SSCCTTSCCSEEEECCH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH--HHHHHHHHCC--CeEEEE----eCCCCCCCceEEEecCh
Confidence 123455667788899999999999998754211 1122333344 677754 55554432125677764
No 23
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=75.44 E-value=59 Score=31.19 Aligned_cols=154 Identities=11% Similarity=0.123 Sum_probs=85.0
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+|||++..-.-|-...++.|+-+++++. +.++.-+ ... .
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~ 45 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--GGTAIAL---------------------------------DAG---R 45 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---T
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEE---------------------------------cCC---C
Confidence 3579999999888888888889998887743 2222111 011 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQL 252 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~ 252 (623)
+.+.....++.+...++|++|+.+.+.+.... ..+.+.+.+ ++||.+ |.+.+... .++++|-. +....+
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~~~~~~--iPvV~~----~~~~~~~~--~~V~~D~~-~~g~~~ 114 (291)
T 3l49_A 46 NDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP--WLQKINDAG--IPLFTV----DTATPHAI--NNTTSNNY-SIGAEL 114 (291)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH--HHHHHHHTT--CCEEEE----SCCCTTCS--EEEEECHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH--HHHHHHHCC--CcEEEe----cCCCCCcC--ceEecChH-HHHHHH
Confidence 23445667888899999999999887543322 233444455 678766 44443322 56777643 222233
Q ss_pred HHHHHHHHhhccCceEEEEecCCCccH------HHHHhhhhcCCcEEEECCc
Q 006961 253 ISNVCTDALSAEKYYYFIRLMGRRASH------VALECTLQSHPNMVILGEE 298 (623)
Q Consensus 253 I~ni~~da~S~~k~~~fVevMGR~aG~------LAL~~aLat~pniilIpEe 298 (623)
...+......+ +++.++ .|..... -+..-+++.++++-++.++
T Consensus 115 ~~~l~~~~~g~-~~i~~i--~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 163 (291)
T 3l49_A 115 ALQMVADLGGK-GNVLVF--NGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPE 163 (291)
T ss_dssp HHHHHHHHTTC-EEEEEE--CSCTTSHHHHHHHHHHHHHHHTCTTEEECSSC
T ss_pred HHHHHHHcCCC-ceEEEE--eCCCCCchHHHHHHHHHHHHHHCCCCEEEeee
Confidence 33333222333 334454 3432211 1123445555666655543
No 24
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=73.13 E-value=24 Score=34.11 Aligned_cols=107 Identities=11% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..+|||++..-.-|=...++.|+-+.+++. +.++.-+. +.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~--- 47 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--KYEALVAT---------------------------------SQ--- 47 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CS---
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--CCEEEEEC---------------------------------CC---
Confidence 34579999999888888888889998887643 33332110 00
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.+...+.++.+...++|++|+.+.+..... .+.+.+.+.+ ++||.+ |.+......-.++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 112 (293)
T 3l6u_A 48 NSRISEREQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAG--IPVFAI----DRMIRSDAVVSSITSNN 112 (293)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTT--CCEEEE----SSCCCCTTCSEEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcC--CCEEEe----cCCCCCCcceeEEecCH
Confidence 12344556778888999999999987765421 1223344444 788766 55554422125677664
No 25
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=72.95 E-value=2.4 Score=43.55 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=25.1
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
.+.|.+|++|||||+-.|+..... . +++|+||+
T Consensus 74 ~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~ 106 (307)
T 1u0t_A 74 DGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVN 106 (307)
T ss_dssp --CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEE
T ss_pred cCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEe
Confidence 478999999999999987765432 2 47999998
No 26
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=72.79 E-value=4.4 Score=43.09 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC----------------CCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK----------------CPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g----------------~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+...+ -.+++|.||-|-
T Consensus 91 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa 161 (408)
T 1oj7_A 91 AYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408)
T ss_dssp BHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence 5678899999999999999999999888888877775432111 358999999664
No 27
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=72.48 E-value=20 Score=34.66 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=66.3
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
.+|||++..-.-|-...++.|+-+.+++. +.++.-+. .. .+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~---~~~ 57 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--GYSMLLTS---------------------------------TN---NNP 57 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CT---TCH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC---CCh
Confidence 79999999988899999999999888743 33332111 01 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHH-HHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNT-DAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~-~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+...+.++.+...++|++|+.+.+.+.. ....+.+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 58 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 121 (298)
T 3tb6_A 58 DNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAA-PSFTLDD 121 (298)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSS-CEEEECH
T ss_pred HHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCC-CEEEeCc
Confidence 4455678888899999999999875421 1112223344444 788754 555544322 4677664
No 28
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=72.10 E-value=44 Score=32.02 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=65.8
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..+|||++..-.-|-...++.|+-+.+.+. +.++.-+. ..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~--- 46 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--GYIGVLFD---------------------------------AN--- 46 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--TCEEEEEE---------------------------------CT---
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC---
Confidence 34579999998888888888889998887632 33332211 00
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.+...+.++.+...++|++|+.+.+. . ...+.+.+.+ ++||.+ |++.....+ .++++|-
T Consensus 47 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~l~~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 107 (276)
T 3jy6_A 47 ADIEREKTLLRAIGSRGFDGLILQSFSN-P----QTVQEILHQQ--MPVVSV----DREMDACPW-PQVVTDN 107 (276)
T ss_dssp TCHHHHHHHHHHHHTTTCSEEEEESSCC-H----HHHHHHHTTS--SCEEEE----SCCCTTCSS-CEEECCH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCc-H----HHHHHHHHCC--CCEEEE----ecccCCCCC-CEEEECh
Confidence 1234445678888999999999999887 2 2223444444 788765 555543332 4666663
No 29
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=71.94 E-value=28 Score=33.08 Aligned_cols=106 Identities=19% Similarity=0.143 Sum_probs=63.8
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
.+|||++..-..|-...++.|+-+.+++. +.++.-+ ..... .+.
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~~~-~~~ 44 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--GVTLLHR---------------------------------STKDD-GDI 44 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--TCEEEEC---------------------------------CCSST-TCH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEE---------------------------------CCCCC-CCH
Confidence 37999999888899999999999888753 2222110 00011 133
Q ss_pred HHHHHHHHHHHHcC-CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 175 EQVNAALTACKNLN-LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 175 e~~~~i~~~l~~~~-Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+...+.++.+.+.+ +|++|+.+-+...... ..+.+.+.+ ++||.+ |++........++++|-
T Consensus 45 ~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~--~~~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d~ 107 (276)
T 3ksm_A 45 AGQIQILSYHLSQAPPDALILAPNSAEDLTP--SVAQYRARN--IPVLVV----DSDLAGDAHQGLVATDN 107 (276)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCSSTTTTHH--HHHHHHHTT--CCEEEE----SSCCSSSCSSEEEECCH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCHHHHHH--HHHHHHHCC--CcEEEE----ecCCCCCCcceEEccCH
Confidence 44556778888888 9999999865332211 122334444 788765 45554433224566663
No 30
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=71.29 E-value=11 Score=36.75 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=65.1
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..+|||++..-.-|=...++.|+-+.+++. +.++.-+. ..
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~--- 47 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--GYSVLLAN---------------------------------TA--- 47 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CT---
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC---
Confidence 34579999998888888888889998887642 33332111 00
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.+...+.++.+...++|++|+.+.+.... +.+.+.+. +++||. +|++.....+ .++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~--~iPvV~----~~~~~~~~~~-~~V~~D~ 109 (291)
T 3egc_A 48 EDIVREREAVGQFFERRVDGLILAPSEGEHD----YLRTELPK--TFPIVA----VNRELRIPGC-GAVLSEN 109 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCT--TSCEEE----ESSCCCCTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhcc--CCCEEE----EecccCCCCC-CEEEECc
Confidence 1234456678889999999999999876322 22233333 478874 5666553332 4666654
No 31
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=70.84 E-value=18 Score=34.94 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=66.3
Q ss_pred CCceEEEEEecC-----CCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccC
Q 006961 92 HPAIRVGIVFCG-----RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGR 166 (623)
Q Consensus 92 ~~~~~IgIv~sG-----G~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS 166 (623)
.+..+|||++.. -.-|-...++.|+.+.+.+. +.++.- ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~ 50 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--GYALYM---------------------------------ST 50 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--TCEEEE---------------------------------CC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--CCEEEE---------------------------------Ee
Confidence 345789999998 78888889999998887643 222211 00
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 167 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 167 ~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.. .+.+.....++.+...++|++|+.+.+.+.. ..+.+.+.+ ++||. +|++......-.++++|-
T Consensus 51 ~~---~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~----~~~~~~~~~~~~~V~~D~ 115 (292)
T 3k4h_A 51 GE---TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVL----IGKPYDRKDEITYVDNDN 115 (292)
T ss_dssp CC---SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEE----ESCCSSCTTTSCEEECCH
T ss_pred CC---CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEE----ECCCCCCCCCCCEEEECc
Confidence 11 1234456678889999999999999876532 223344445 67775 456554432125677664
No 32
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=69.73 E-value=7.4 Score=41.33 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++ ++ + .+++|.||-|
T Consensus 91 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA-~~--~--~~p~i~IPTT 139 (387)
T 3uhj_A 91 CTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVA-ID--T--GARIVIAPTI 139 (387)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHH-HH--T--TCEEEECCSS
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHH-Hh--c--CCCEEEecCc
Confidence 457788999999999999999999988888877777 33 2 4899999988
No 33
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=69.49 E-value=2.7 Score=44.66 Aligned_cols=122 Identities=13% Similarity=0.066 Sum_probs=69.3
Q ss_pred CCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCccc----ccC
Q 006961 91 EHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDM----LGR 166 (623)
Q Consensus 91 ~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~----lGS 166 (623)
....++|+||.= -..|.....+..+++.|... +.+||-=. ++. +.+. +.+.-.+.. ...
T Consensus 35 ~~~~k~I~iv~K-~~~~~~~~~~~~l~~~L~~~--~~~V~ve~---------~~~----~~~~-~~~~~~~~~~~~~~~~ 97 (365)
T 3pfn_A 35 NKSPKSVLVIKK-MRDASLLQPFKELCTHLMEE--NMIVYVEK---------KVL----EDPA-IASDESFGAVKKKFCT 97 (365)
T ss_dssp SSCCCEEEEEEC-TTCGGGHHHHHHHHHHHHHT--SCEEEEEH---------HHH----HSHH-HHHCSTTHHHHHHCEE
T ss_pred CCCCCEEEEEec-CCCHHHHHHHHHHHHHHHHC--CCEEEEeh---------HHh----hhhc-cccccccccccccccc
Confidence 345789999986 35678888899999988753 45554311 110 0000 000000000 000
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHH
Q 006961 167 TKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTIC 246 (623)
Q Consensus 167 ~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~ 246 (623)
.+..... ...+.|.+|++|||||+-.|+.+.. +..++|+||= . -++||-|-.
T Consensus 98 ~~~~~~~-----------~~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN---------~---G~LGFLt~~ 149 (365)
T 3pfn_A 98 FREDYDD-----------ISNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFH---------L---GSLGFLTPF 149 (365)
T ss_dssp ECTTTCC-----------CTTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEE---------S---SSCTTTCCE
T ss_pred cccChhh-----------cccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEc---------C---CCCccceee
Confidence 0001100 1247899999999999998887542 4468999994 1 388887643
Q ss_pred --HHHHHHHHHHH
Q 006961 247 --KVNSQLISNVC 257 (623)
Q Consensus 247 --~~~s~~I~ni~ 257 (623)
+.+.+++..+.
T Consensus 150 ~~~~~~~~l~~vl 162 (365)
T 3pfn_A 150 SFENFQSQVTQVI 162 (365)
T ss_dssp ESTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 34555666554
No 34
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=69.29 E-value=7.1 Score=41.13 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 230 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-. + .+++|.||-|- .|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa-tg 124 (364)
T 3iv7_A 73 PIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY-AG 124 (364)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS-SC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc-cc
Confidence 57889999999999999999999998888888777652 2 48999999887 54
No 35
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=68.68 E-value=39 Score=32.49 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=59.9
Q ss_pred CCceEEEEEecC--CCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC
Q 006961 92 HPAIRVGIVFCG--RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 92 ~~~~~IgIv~sG--G~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~ 169 (623)
.+..+||+++.. -..|-...++.|+-+++.+. +.++. +....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~- 60 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLL---------------------------------LADGK- 60 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEE---------------------------------EECCT-
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC-
Confidence 345789999977 67788888889998877642 22211 10111
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-cCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 170 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-AKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 170 k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~-~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.+.....++.+...++|++|+.+.+.+.. .+ +.+.+ .+ ++||.+ |.+.....+ .++++|-
T Consensus 61 --~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 123 (296)
T 3brq_A 61 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAHS--QPIMVL----NRRLRKNSS-HSVWCDH 123 (296)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTCS--SCEEEE----SCCCSSSGG-GEECCCH
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcCC--CCEEEE----ccccCCCCC-CEEEEch
Confidence 1233445567788889999999998865432 22 33444 44 777765 444332221 4677664
No 36
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=68.66 E-value=10 Score=39.61 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
.+..+++++.+++.+.|.+|-|||--.+..|..+| +++ .+++|.||-|
T Consensus 72 ~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA-~~~----~~p~i~IPTT 119 (370)
T 1jq5_A 72 RNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVA-DEL----DAYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH-HHH----TCEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH-Hhc----CCCEEEeccc
Confidence 45678899999999999999999988888887777 432 4899999988
No 37
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=68.06 E-value=86 Score=30.25 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=56.7
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
+.+||+++..-.-|=...++.|+-+.+++. +.+++ +. .+ .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~--------------------------------~~-~~----~~ 42 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEVI--------------------------------KI-AV----PD 42 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--TEEEE--------------------------------EE-EC----CS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--CCEEE--------------------------------Ee-CC----CC
Confidence 579999998888888888889998887643 21111 11 11 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
.+...+.++.+...++|++|+.+-+..... .+.+.+.+.| ++||.+
T Consensus 43 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 43 GEKTLNAIDSLAASGAKGFVICTPDPKLGS--AIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGHH--HHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCchhhH--HHHHHHHHCC--CcEEEe
Confidence 344556788888899999999997765322 2223344444 788754
No 38
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=67.78 E-value=8.1 Score=40.57 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-. + .+++|.||-|-
T Consensus 74 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 74 PIESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46788899999999999999999998888888777652 2 48999999884
No 39
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=67.37 E-value=9.9 Score=39.78 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-. + .+++|.||-|-
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa 121 (353)
T 3hl0_A 72 PVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY 121 (353)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS
T ss_pred cHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46788999999999999999999998888887777652 2 48999999887
No 40
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=66.83 E-value=6.2 Score=41.45 Aligned_cols=58 Identities=26% Similarity=0.223 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeecccCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~-------------~g~~i~VIGVPKTIDND 230 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+.. ..-.+++|.||-|--.+
T Consensus 83 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtg 153 (371)
T 1o2d_A 83 SFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTG 153 (371)
T ss_dssp BHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchh
Confidence 67889999999999999999999998888888777764331 00358999999775443
No 41
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=66.31 E-value=11 Score=39.90 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeecccCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTLNGD 230 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~-------------g~~i~VIGVPKTIDND 230 (623)
+.+..+++++.+++.+.|.+|-|||--++..|..++-.+... .-.+++|.||-|--.|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 143 (383)
T 3ox4_A 73 TVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTA 143 (383)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCC
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCch
Confidence 568899999999999999999999988888887777654211 1158999999887443
No 42
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=66.05 E-value=2.1 Score=42.75 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=25.7
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
.+.|.+|++|||||+-.|+... . + .++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~---~--~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKA---A--D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTB---C--T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHh---C--C-CCCEEEEE
Confidence 3789999999999998877542 1 2 58999997
No 43
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=66.00 E-value=24 Score=34.25 Aligned_cols=81 Identities=7% Similarity=0.062 Sum_probs=57.1
Q ss_pred CCCEEEEEccChhhhhcC---------CeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEe
Q 006961 125 PKSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 195 (623)
Q Consensus 125 ~~~~v~Gf~~G~~GL~~~---------~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviI 195 (623)
....++|.-+|..=|++. ++=.++++..+.|...| . ++-.... ++..++++|++.+.+++.+-++++
T Consensus 21 ~~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~-i~~~p~e--KD~TD~e~Al~~a~~~~~~~I~i~ 96 (212)
T 3l8m_A 21 KHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-E-INPYNSE--KDDTDLALGIDQAVKRGYRNIDVY 96 (212)
T ss_dssp TTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-B-CCCCC-----CBCHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-c-EEEECCc--CCCCHHHHHHHHHHHCCCCEEEEE
Confidence 456899999998887664 44466778888888776 3 4433222 244578999999999999999999
Q ss_pred cCcch-----HHHHHHHHH
Q 006961 196 GGVTS-----NTDAAYLAE 209 (623)
Q Consensus 196 GGdgS-----~~~A~~Lae 209 (623)
|+-|. +.+...|..
T Consensus 97 Ga~GgR~DH~lani~ll~~ 115 (212)
T 3l8m_A 97 GATGGRLDHFMGALQILEK 115 (212)
T ss_dssp SCSSSCHHHHHHHHHHHTC
T ss_pred cCCCCchhHHHHHHHHHHh
Confidence 99874 445555543
No 44
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=65.48 E-value=2.4 Score=45.38 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=36.1
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHHHhcCCCC-eEEEeeecccCCCCCCCCCCCcChhhHHH--HHHHHHHHHH
Q 006961 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDTICK--VNSQLISNVC 257 (623)
Q Consensus 187 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i-~VIGVPKTIDNDl~~~~ie~S~GFdTA~~--~~s~~I~ni~ 257 (623)
.+.|.+|++|||||+-.|+.... +..+ +|+||+- -++||-|..+ .+.+++..+.
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~------------G~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL------------GTLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC------------SSCCSSCCEEGGGHHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC------------CCcccCCcCChHHHHHHHHHHh
Confidence 35899999999999999876532 2346 7999971 2567766533 3444455543
No 45
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=64.65 E-value=11 Score=39.47 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcC---------------CCCeEEEeeeccc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK---------------CPTKVVGVPVTLN 228 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g---------------~~i~VIGVPKTID 228 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+...+ -.+++|.||-|--
T Consensus 73 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 73 TITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 6788999999999999999999999888888877776542111 1589999997773
No 46
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=64.37 E-value=47 Score=32.28 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=65.0
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
..+|||++..-..|-...++.|+-+++++. +.++. +.... ...+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~-~~~~ 46 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--KVDLQ---------------------------------ILAPP-GAND 46 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EECCS-SSCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--CcEEE---------------------------------EECCC-CcCC
Confidence 478999999888888999999999887743 22221 00000 0123
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCC---CCCCCcChhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ---FVETNVGFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~---~ie~S~GFdT 244 (623)
.+...+.++.+...++|++|+.+.+...... ..+.+.+.| ++||.+ |++.... ..-.++++|-
T Consensus 47 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~--~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~~~V~~D~ 112 (297)
T 3rot_A 47 VPKQVQFIESALATYPSGIATTIPSDTAFSK--SLQRANKLN--IPVIAV----DTRPKDKTKNPYLVFLGSDN 112 (297)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCSSTTHH--HHHHHHHHT--CCEEEE----SCCCSCTTTSCCSCEEECCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH--HHHHHHHCC--CCEEEE----cCCCccccccCcceEEccCh
Confidence 4555678888999999999998876652211 122333344 788765 4444431 1114666653
No 47
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=64.10 E-value=59 Score=31.94 Aligned_cols=104 Identities=14% Similarity=0.010 Sum_probs=65.3
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
..+|||++..-.-|=...++.|+-+.+++. +.++.-+ .+. .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~ 44 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--GYKTDLQ---------------------------------YAD---DD 44 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---TC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--CCEEEEe---------------------------------eCC---CC
Confidence 579999999888888899999998888743 2222211 011 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCC-CCCCCCcChh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKN-QFVETNVGFD 243 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~-~~ie~S~GFd 243 (623)
.+...+.++.+...++|++|+.+-+..... ...+.+.+.| ++||.+ |++.++ .....++|+|
T Consensus 45 ~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~--~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 45 IPNQLSQIENMVTKGVKVLVIASIDGTTLS--DVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSGGGGH--HHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCchhHH--HHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 344456778888899999999987753221 1223344444 788765 555544 2333477766
No 48
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=64.07 E-value=46 Score=33.10 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=64.5
Q ss_pred CCceEEEEEecC--CCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC
Q 006961 92 HPAIRVGIVFCG--RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 92 ~~~~~IgIv~sG--G~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~ 169 (623)
.+..+||+++.. -.-|=...++.|+-+.+... |.++.-+ .+.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~- 102 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLLLA---------------------------------DGK- 102 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT-
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC-
Confidence 345799999987 67777888888888887643 2222211 010
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 170 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 170 k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.+...+.++.+...++|++|+.+.+.+... +.+.+.+.+ ++||. +|.+...... .+++.|-
T Consensus 103 --~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 165 (338)
T 3dbi_A 103 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMV----LNRRLRKNSS-HSVWCDH 165 (338)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEE----ESSCCSSSGG-GEECBCH
T ss_pred --CChHHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEE----EcCCCCCCCC-CEEEECh
Confidence 12334455778889999999999998766432 333344444 67774 4666654332 4566663
No 49
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=62.56 E-value=28 Score=34.66 Aligned_cols=105 Identities=13% Similarity=0.233 Sum_probs=67.4
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhc------C---------CeeecCHhHHhchhh
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFA------Q---------KTLEVTKEILSTYKN 157 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~------~---------~~~eLt~~~v~~~~n 157 (623)
..++-++|+++|+-|- .++.+.+. ..-+++.-+|..=|++ . ++=.++++..+.|..
T Consensus 19 ~~~~~~lIv~ng~~~~---~~~~~~~~------~~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~ 89 (247)
T 3s4y_A 19 GNLKYCLVILNQPLDN---YFRHLWNK------ALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYAT 89 (247)
T ss_dssp -CCCEEEEECSSCCCT---THHHHHHH------CSCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHH
T ss_pred CCCCEEEEEECCcchH---HHHHHHhh------CCEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHh
Confidence 3456777778888873 33333321 3457899999777766 2 333566777888887
Q ss_pred cCCcccccCcCCCCCChHHHHHHHHHHHHc------CCCEEEEecCcch-----HHHHHHHHHH
Q 006961 158 QGGYDMLGRTKDQIRTTEQVNAALTACKNL------NLDGLVIIGGVTS-----NTDAAYLAET 210 (623)
Q Consensus 158 ~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~------~Id~LviIGGdgS-----~~~A~~Lae~ 210 (623)
.|- .++- ..-++.-++++|++.+.+. +.+-++++|+-|. +.+...|..+
T Consensus 90 ~~~-~i~~---~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lani~lL~~~ 149 (247)
T 3s4y_A 90 KGC-ELIS---TPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQA 149 (247)
T ss_dssp TTC-EEEE---CCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHHHHHHHHG
T ss_pred cCC-EEEE---CCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHHHHHHHHH
Confidence 765 3553 2223455788898887764 7899999999775 3444445443
No 50
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=61.38 E-value=71 Score=31.88 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=57.3
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..+||+++..-.-|=...++.|+-+.+.+ .+.+++-+. +.
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~---------------------------------~~--- 107 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED--TELQPVVGV---------------------------------TD--- 107 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--SSSEEEEEE---------------------------------CT---
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--CCCEEEEEe---------------------------------CC---
Confidence 3457899999887788888888999887753 233332110 00
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
.+.+...+.++.+...++|++|+.+-+.+.. +.+.+.+.+ ++||.+
T Consensus 108 ~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 108 YLPEKEEKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAG--IPVVEI 153 (344)
T ss_dssp TCHHHHHHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCS--SCEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCC--CCEEEE
Confidence 0233445677888899999999998776542 223344455 677766
No 51
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=61.31 E-value=9.9 Score=40.25 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCcchHHHHHHHHHHHHhc-------------CCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLN---LDGLVIIGGVTSNTDAAYLAETFAEA-------------KCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~---Id~LviIGGdgS~~~A~~Lae~~~~~-------------g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+ .|.+|-|||--++..|..++-.+... +-.+++|.||-|-
T Consensus 91 t~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTa 161 (375)
T 3rf7_A 91 TTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVS 161 (375)
T ss_dssp BHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSC
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCC
Confidence 5788999999999998 99999999988888888777543211 1147999999764
No 52
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=61.26 E-value=7.7 Score=39.95 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 182 TACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 182 ~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
+.+...+.|.+|++|||||...+..- +.+.+.++++.+||.==-||+.
T Consensus 74 ~~~~~~~~d~vvv~GGDGTv~~v~~~---l~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 74 ERAMHENYDVLIAAGGDGTLNEVVNG---IAEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHTTTTCSEEEEEECHHHHHHHHHH---HTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHhhcCCCEEEEEcCchHHHHHHHH---HHhCCCCCcEEEecCCcHhHHH
Confidence 33444578999999999998886543 2223557899999976667775
No 53
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=59.82 E-value=17 Score=38.06 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------c------CCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------A------KCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~-------~------g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.... . +-.+++|.||-|-
T Consensus 77 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~ 144 (387)
T 3bfj_A 77 KDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTA 144 (387)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 67889999999999999999999998888888777654211 0 1257999999776
No 54
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=59.79 E-value=31 Score=33.44 Aligned_cols=107 Identities=11% Similarity=0.161 Sum_probs=64.1
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+|||++..-..|-...++.|+-+.+++. +.++.-+. +.. ..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~~---------------------------------~~~-~~ 47 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--GVNLRVLE---------------------------------AGG-YP 47 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--TCEEEEEE---------------------------------CSS-TT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCeEEEEc---------------------------------CCC-CC
Confidence 4579999999888888888999998887754 22222111 111 01
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC-----CCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK-----NQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~-----~~~ie~S~GFdT 244 (623)
+.+...+.++.+...++|++|+.+.+..... ..+ +.+. . +++||. +|++.. ......++++|-
T Consensus 48 ~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-~~~-~~~~-~--~iPvV~----~~~~~~~~~~~~~~~~~~V~~D~ 115 (304)
T 3o1i_D 48 NKSRQEQQLALCTQWGANAIILGTVDPHAYE-HNL-KSWV-G--NTPVFA----TVNQLDLDEEQSTLLKGEVGVDW 115 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSSTTSST-TTH-HHHT-T--TSCEEE----CSSCCCCCTTTGGGEEEECCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-HHH-HHHc-C--CCCEEE----ecCCCcccccCCCceEEEEecCH
Confidence 3445566788888899999999987655111 112 2232 3 478775 455553 111125667663
No 55
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=59.51 E-value=32 Score=32.73 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=64.8
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
..+|||++..-.-|=...++.|+-+.+++. +.++.-+. .. .+
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~---~~ 43 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARAR--GYQLLIAS---------------------------------SD---DQ 43 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CT---TC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC---CC
Confidence 368999999888888888999998887643 33332110 00 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.....++.+...++|++|+.+.+.... . ..+.+.+.+ ++||. +|++.....+ .++++|-
T Consensus 44 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~--~-~~~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~d~ 104 (272)
T 3o74_A 44 PDSERQLQQLFRARRCDALFVASCLPPED--D-SYRELQDKG--LPVIA----IDRRLDPAHF-CSVISDD 104 (272)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSC--C-HHHHHHHTT--CCEEE----ESSCCCTTTC-EEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccH--H-HHHHHHHcC--CCEEE----EccCCCcccc-CEEEEch
Confidence 34455678888999999999998874321 1 223344444 67774 5666654432 4666663
No 56
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=58.62 E-value=12 Score=38.82 Aligned_cols=53 Identities=13% Similarity=0.301 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 172 RTTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
++.+..+++.+.+++.++ |.+|-|||--.+..|..+|-.+ .+ .+++|.||-|.
T Consensus 66 k~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 121 (343)
T 3clh_A 66 KNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-FR--GIDFINIPTTL 121 (343)
T ss_dssp CSHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEeCCch
Confidence 356889999999999999 9999999987777776666432 23 48999999885
No 57
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=58.14 E-value=41 Score=29.19 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=58.4
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+.+++.|+=+|+.+ ..+.+.+.. +++.++.||.+--. .... ....|..++| .
T Consensus 3 ~~~~vlIiGaG~~g-------~~l~~~l~~-~~g~~vvg~~d~~~------------~~~g--~~i~g~pV~g--~---- 54 (141)
T 3nkl_A 3 AKKKVLIYGAGSAG-------LQLANMLRQ-GKEFHPIAFIDDDR------------KKHK--TTMQGITIYR--P---- 54 (141)
T ss_dssp CCEEEEEECCSHHH-------HHHHHHHHH-SSSEEEEEEECSCG------------GGTT--CEETTEEEEC--G----
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHh-CCCcEEEEEEECCc------------ccCC--CEecCeEEEC--H----
Confidence 35678877655432 334444443 45889999875211 1000 0013433443 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
+ ...+.++++++|.+++--+..+......+.+.+.+.| +.|.-+|-
T Consensus 55 --~---~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~g--v~v~~vP~ 100 (141)
T 3nkl_A 55 --K---YLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLH--VEVLTIPN 100 (141)
T ss_dssp --G---GHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTT--CEEEECCC
T ss_pred --H---HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcC--CeEEECCC
Confidence 1 2345677899999888777766667778888887776 67888884
No 58
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=57.55 E-value=12 Score=38.86 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++.+.+++.++ |.+|-|||--.+..|..+|-.+ .+ .+++|.||-|.
T Consensus 72 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~r--gip~i~IPTT~ 126 (354)
T 1xah_A 72 TFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LR--GVHFIQVPTTI 126 (354)
T ss_dssp SHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECST
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEECCcc
Confidence 66889999999999999 8999999987777777666432 23 48999999765
No 59
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=56.56 E-value=13 Score=38.28 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHcCCCEEEEecCcchHHHHHHHHHHHHhc--CCCCeEEEeeecccCCCC
Q 006961 184 CKNLNLDGLVIIGGVTSNTDAAYLAETFAEA--KCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 184 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~--g~~i~VIGVPKTIDNDl~ 232 (623)
+...+.|.+|++|||||+..+..-. .+. +.++++..||.==-||+.
T Consensus 78 ~~~~~~d~vvv~GGDGTl~~v~~~l---~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 78 ARKFGVATVIAGGGDGTINEVSTAL---IQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHTCSEEEEEESHHHHHHHHHHH---HHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHhcCCCEEEEEccchHHHHHHHHH---hhcccCCCCeEEEecCcCHHHHH
Confidence 3345789999999999998865432 212 456888889975556664
No 60
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=55.60 E-value=18 Score=38.43 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHh-------------cCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE-------------AKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~-------------~g~~i~VIGVPKTI 227 (623)
+.+..+++++.+++.+.|.+|-|||--.+..|..++-.+.. ..-.+++|.||-|-
T Consensus 86 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTa 153 (407)
T 1vlj_A 86 VLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTIS 153 (407)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 56889999999999999999999998888888777754310 01258999999764
No 61
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=55.50 E-value=69 Score=32.19 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=55.2
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++..-.-|-...++.|+-+.+... |.+++- ..+. .
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~---~ 110 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--GLQLLL---------------------------------GYTA---Y 110 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHT--TCEEEE---------------------------------EECT---T
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCC---C
Confidence 4568999998777777778888888777642 333321 1111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+.+...+.++.+...++|++|+.+.+.+.... +.+.+.+ ++||.+
T Consensus 111 ~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~----~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 111 SPEREEQLVETMLRRRPEAMVLSYDGHTEQTI----RLLQRAS--IPIVEI 155 (355)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEEECSCCCHHHH----HHHHHCC--SCEEEE
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 23344567788889999999999887664322 3344444 788866
No 62
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=53.77 E-value=18 Score=38.20 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHcC--C---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 172 RTTEQVNAALTACKNLN--L---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~--I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
++.+..+++.+.+++.+ + |.+|-+||--....|...|-.+ .+| +++|.||-|.
T Consensus 84 k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 84 KSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp SSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 35688999999999999 9 9999999977777766665433 344 8999999664
No 63
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=53.64 E-value=11 Score=38.98 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 230 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 230 (623)
+.+..+++ +.+++.+.|.+|-|||--.+..|..+| +++ .+++|.||-|.-.|
T Consensus 74 ~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~~----~~p~i~IPTT~~tg 125 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FLR----KLPFISVPTSTSND 125 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HHH----TCCEEEEESCCSSG
T ss_pred CHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hhc----CCCEEEecCcccCC
Confidence 45677888 888889999999999988888777776 442 47999999776543
No 64
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=53.44 E-value=38 Score=33.12 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=58.6
Q ss_pred CCEEEEEccChhhhhcC---------CeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEec
Q 006961 126 KSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIG 196 (623)
Q Consensus 126 ~~~v~Gf~~G~~GL~~~---------~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIG 196 (623)
...++|.-+|..=|++. ++=.++++..+.|...|- .++-.... ++..++++|++.+.+++.+-++++|
T Consensus 25 ~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~-~i~~~p~e--KD~TD~e~Al~~a~~~g~~~I~i~G 101 (222)
T 3lm8_A 25 HTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAP-ALHVYQAE--KDQTDLDLALDWALEKQPDIIQIFG 101 (222)
T ss_dssp TEEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCT-TCEEECCC--SSSCHHHHHHHHHHHHCCSEEEEES
T ss_pred CCEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCC-eEEEeCCC--CCCCHHHHHHHHHHHcCCCEEEEEc
Confidence 35788888888877653 333567778888877653 34433222 2445789999999999999999999
Q ss_pred Ccc-----hHHHHHHHHHHH
Q 006961 197 GVT-----SNTDAAYLAETF 211 (623)
Q Consensus 197 Gdg-----S~~~A~~Lae~~ 211 (623)
+-| ++.+...|..++
T Consensus 102 a~GgR~DH~lani~ll~~~~ 121 (222)
T 3lm8_A 102 ITGGRADHFLGNIQLLYKGV 121 (222)
T ss_dssp CCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHH
Confidence 977 456666666654
No 65
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=52.77 E-value=12 Score=38.04 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 179 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 179 ~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
..++.+.+ +.|.+|++|||||...+.. .+...+.++++-.||.==-||+.
T Consensus 55 ~~~~~~~~-~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 55 KYCQEFAS-KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp HHHHHHTT-TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHhhc-CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHH
Confidence 33444433 8899999999999886532 22233356899999987777775
No 66
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=50.18 E-value=62 Score=31.25 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=50.0
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEc---cChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL---GGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~---~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
+||||+.||.-. ....+++..+....+.+|.++. ....|+ .+...=|-...--...++
T Consensus 1 ~riaVl~SG~Gs-----~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~--------------~~A~~~gIp~~~~~~~~~ 61 (209)
T 1meo_A 1 ARVAVLISGTGS-----NLQALIDSTREPNSSAQIDIVISNKAAVAGL--------------DKAERAGIPTRVINHKLY 61 (209)
T ss_dssp CEEEEEESSSCT-----THHHHHHHHHSTTCSCEEEEEEESSTTCHHH--------------HHHHHTTCCEEECCGGGS
T ss_pred CeEEEEEECCch-----HHHHHHHHHhcCCCCcEEEEEEeCCCChHHH--------------HHHHHcCCCEEEECcccc
Confidence 489999998763 3445555544323356777775 233332 112222322221122334
Q ss_pred CChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHH
Q 006961 172 RTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYL 207 (623)
Q Consensus 172 ~t~e~~-~~i~~~l~~~~Id~LviIGGdgS~~~A~~L 207 (623)
.+.+.+ +.+.+.+++++.|.+|+.| .+-.-....|
T Consensus 62 ~~r~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l 97 (209)
T 1meo_A 62 KNRVEFDSAIDLVLEEFSIDIVCLAG-FMRILSGPFV 97 (209)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEES-CCSCCCHHHH
T ss_pred CchhhhhHHHHHHHHhcCCCEEEEcc-hhhhCCHHHH
Confidence 454444 4577889999999777776 4433333344
No 67
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=48.81 E-value=1e+02 Score=30.11 Aligned_cols=102 Identities=12% Similarity=0.138 Sum_probs=53.8
Q ss_pred cCCCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC
Q 006961 90 TEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 90 ~~~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~ 169 (623)
....++||+|+.||... ....+++++.+...+.+|.++.--.. + ..+..+...=|-...--...
T Consensus 18 ~~~~~~rI~~l~SG~g~-----~~~~~l~~l~~~~~~~~I~~Vvt~~~-----~------~~~~~~A~~~gIp~~~~~~~ 81 (229)
T 3auf_A 18 FQGHMIRIGVLISGSGT-----NLQAILDGCREGRIPGRVAVVISDRA-----D------AYGLERARRAGVDALHMDPA 81 (229)
T ss_dssp CBTTCEEEEEEESSCCH-----HHHHHHHHHHTTSSSEEEEEEEESST-----T------CHHHHHHHHTTCEEEECCGG
T ss_pred ccCCCcEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEcCCC-----c------hHHHHHHHHcCCCEEEECcc
Confidence 33456899999999852 24455555543222457766652110 0 01122222333233322333
Q ss_pred CCCChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 006961 170 QIRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLA 208 (623)
Q Consensus 170 k~~t~e~~-~~i~~~l~~~~Id~LviIGGdgS~~~A~~La 208 (623)
++++.+.+ +.+++.+++++.|.+|+.| .+-.-....|.
T Consensus 82 ~~~~r~~~~~~~~~~l~~~~~Dliv~ag-y~~IL~~~~l~ 120 (229)
T 3auf_A 82 AYPSRTAFDAALAERLQAYGVDLVCLAG-YMRLVRGPMLT 120 (229)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCSEEEESS-CCSCCCHHHHH
T ss_pred cccchhhccHHHHHHHHhcCCCEEEEcC-hhHhCCHHHHh
Confidence 44454444 3567889999999776664 55544444444
No 68
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=47.95 E-value=22 Score=37.92 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 172 RTTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
++.+..+++.+.+++.++ |.+|-+||--....|..+|-.+ .+ .+++|.||-|.
T Consensus 104 kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~-~r--gip~I~IPTTl 159 (390)
T 3okf_A 104 KTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY-QR--GVDFIQIPTTL 159 (390)
T ss_dssp CBHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred chHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh-cC--CCCEEEeCCCC
Confidence 356789999999999999 6999999987777776665332 23 48999999886
No 69
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=47.54 E-value=23 Score=36.84 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+-+..+++.+.++++++ |.+|-|||--....|...|-.+ .+ .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 120 (348)
T 1ujn_A 66 SLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LR--GVAYLAFPTTT 120 (348)
T ss_dssp SHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcH
Confidence 56788999999999998 8999999987777777666432 23 48999999764
No 70
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=46.92 E-value=65 Score=31.50 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=51.9
Q ss_pred CCEEEEEccChhhhhcC---------CeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEec
Q 006961 126 KSTLLGFLGGSEGLFAQ---------KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIG 196 (623)
Q Consensus 126 ~~~v~Gf~~G~~GL~~~---------~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIG 196 (623)
...++|.-+|..=|++. ++=.++++..+.|...|- .++-.... ++..++++|++.+.+++.+-++++|
T Consensus 24 ~~~~i~~Dgga~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~~-~i~~~p~e--KD~TD~e~Al~~a~~~g~~~I~i~G 100 (223)
T 3k94_A 24 DVCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQAFP-DLDVWPAE--KDKTDMEIALDWAVEQTARCIRLFG 100 (223)
T ss_dssp TEEEEEETTHHHHHHHHTCCCSEEESCGGGSCHHHHHHHHHHCT-TCCEECCB--TTBCHHHHHHHHHHTTCCSEEEEES
T ss_pred CCEEEEECHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCC-eEEECCCc--CCCCHHHHHHHHHHHcCCCEEEEEc
Confidence 45788888888877653 333667777777877653 34432222 2455789999999999999999999
Q ss_pred Ccch
Q 006961 197 GVTS 200 (623)
Q Consensus 197 GdgS 200 (623)
+-|.
T Consensus 101 a~GG 104 (223)
T 3k94_A 101 ATGG 104 (223)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 9875
No 71
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=46.91 E-value=26 Score=36.92 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++.+.+++.++ |.+|-+||--.+..|..+|..+ .+| +++|.||-|.
T Consensus 85 t~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 139 (368)
T 3qbe_A 85 DLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LRG--VSIVHLPTTL 139 (368)
T ss_dssp BHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-ccC--CcEEEECCCC
Confidence 56788999999999875 9999999988877777666533 244 8999999775
No 72
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=45.76 E-value=61 Score=31.04 Aligned_cols=108 Identities=13% Similarity=0.022 Sum_probs=61.3
Q ss_pred CceEEEEEecCCC--CCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 93 PAIRVGIVFCGRQ--SPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 93 ~~~~IgIv~sGG~--aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
+..+|||++..-. .|-...++.|+-+.+++. +.++. +......
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~~ 48 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--EIKLE---------------------------------FMAPEKE 48 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------ECCCSST
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EecCCCC
Confidence 3468999998766 777888888888877643 22211 1000001
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |.+.+....-.++++|-
T Consensus 49 -~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 113 (289)
T 3brs_A 49 -EDYLVQNELIEEAIKRKPDVILLAAADYEKTY-DAA-KEIKDAG--IKLIVI----DSGMKQDIADITVATDN 113 (289)
T ss_dssp -TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTH-HHH-TTTGGGT--CEEEEE----SSCCSSCCCSEEEECCH
T ss_pred -CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHCC--CcEEEE----CCCCCCCcceEEEeeCh
Confidence 12344456778888899999999987654211 112 2233334 788765 44443321114677664
No 73
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=45.44 E-value=1.4e+02 Score=28.52 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=60.6
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++..-..|-...++.|+-+.+++. +.++. +.... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 48 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--GYRIL---------------------------------LCNTE---S 48 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 4568999998767777778888888877642 22221 00000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.....++.+...++|++|+.+.+.+.. .+ +.+. . +++||.+ |.+.....+ .++++|-
T Consensus 49 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~-~--~iPvV~~----~~~~~~~~~-~~V~~D~ 108 (285)
T 3c3k_A 49 DLARSRSCLTLLSGKMVDGVITMDALSELP---EL-QNII-G--AFPWVQC----AEYDPLSTV-SSVSIDD 108 (285)
T ss_dssp CHHHHHHHTHHHHTTCCSEEEECCCGGGHH---HH-HHHH-T--TSSEEEE----SSCCTTSSS-CEEECCH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHh-c--CCCEEEE----ccccCCCCC-CEEEECh
Confidence 223344567788889999999998765432 22 2333 3 4788865 444432221 4677664
No 74
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=45.38 E-value=1.2e+02 Score=28.88 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=25.1
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHh
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKL 122 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~ 122 (623)
+..+|||++..-..|-...++.|+-+.+++
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~ 36 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLAL 36 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHT
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHH
Confidence 456899999887788888999999988764
No 75
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=45.22 E-value=2.4e+02 Score=27.85 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=61.5
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++..-..|-...++.|+-+.+... +.++. +..+. .
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~ 98 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI---------------------------------LGNAW---N 98 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 4568999998777777778888888877642 22221 10010 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.....++.+...++|++|+.+.+.+.... +.+.+. .+++||.+ |++........++++|-
T Consensus 99 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~----~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~D~ 161 (340)
T 1qpz_A 99 NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLL----AMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNA 161 (340)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHH----HHHHTT-TTSCEEEE----EESSCCCSSSEEEECCH
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhh-CCCCEEEE----ecccCCCCCCCEEEECH
Confidence 23444566788888999999999877553222 223221 24777765 33333222113677663
No 76
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=44.73 E-value=1.3e+02 Score=28.90 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=61.3
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+|||++..-..|-...++.|+-+.+++. +.++. +.... .
T Consensus 15 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~ 56 (289)
T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATMY--KYNII---------------------------------LSNSD---Q 56 (289)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---C
Confidence 4568999998777777788888888877642 22221 00000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+...+.++.+...++|++|+.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 57 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 117 (289)
T 2fep_A 57 NMEKELHLLNTMLGKQVDGIVFMGGNITDEH---V-AEFKRSP--VPIVLA----ASVEEQEET-PSVAIDY 117 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCHHH---H-HHHHHSS--SCEEEE----SCCCTTCCS-CEEECCH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCHHH---H-HHHHhcC--CCEEEE----ccccCCCCC-CEEEECc
Confidence 2334456778888899999999987654222 2 2333444 788766 444332221 4677663
No 77
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=44.56 E-value=1.9e+02 Score=27.41 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=19.8
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCeE
Q 006961 196 GGVTSNTDAAYLAETFAEAKCPTKV 220 (623)
Q Consensus 196 GGdgS~~~A~~Lae~~~~~g~~i~V 220 (623)
||.|.-+.|..||.++.++|.++-+
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~Vll 36 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLGHDVTI 36 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 7888888899999999888765444
No 78
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=44.12 E-value=19 Score=37.73 Aligned_cols=48 Identities=25% Similarity=0.211 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+.+..+++.+.+++ +.|.+|-|||--.+..|..+| ++ + .+++|.||-|
T Consensus 80 ~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA-~~--~--~~p~i~IPTT 127 (376)
T 1kq3_A 80 SDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVA-YK--L--KKPVVIVPTI 127 (376)
T ss_dssp BHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHH-HH--T--TCCEEEEESS
T ss_pred CHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHH-Hh--c--CCCEEEecCc
Confidence 34678888888888 999999999988888877777 33 2 4899999988
No 79
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=43.88 E-value=34 Score=33.01 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=61.5
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCE-EEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST-LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~-v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
.+..+|||++..-.-|-...++.|+-+.+.+. |.+ +.-+ .+.
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~~-- 50 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--GYTALISF---------------------------------STN-- 50 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CSS--
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--CCCEEEEE---------------------------------eCC--
Confidence 34579999998877888888888888877643 333 2211 111
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCC-CCCCCCCCCcChhh
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD-LKNQFVETNVGFDT 244 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND-l~~~~ie~S~GFdT 244 (623)
.+.+...+.++.+...++|++|+.+ .. + +.+. ..+++||. +|++ +....+ ++++|-
T Consensus 51 -~~~~~~~~~~~~l~~~~vdgiIi~~--~~------~-~~~~--~~~iPvV~----~~~~~~~~~~~--~V~~D~ 107 (277)
T 3hs3_A 51 -SDVKKYQNAIINFENNNVDGIITSA--FT------I-PPNF--HLNTPLVM----YDSANINDDIV--RIVSNN 107 (277)
T ss_dssp -CCHHHHHHHHHHHHHTTCSEEEEEC--CC------C-CTTC--CCSSCEEE----ESCCCCCSSSE--EEEECH
T ss_pred -CChHHHHHHHHHHHhCCCCEEEEcc--hH------H-HHHH--hCCCCEEE----EcccccCCCCE--EEEECh
Confidence 1234445678889999999999998 11 1 1222 23477774 5666 655443 666663
No 80
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=43.70 E-value=1.2e+02 Score=29.12 Aligned_cols=103 Identities=12% Similarity=0.025 Sum_probs=60.0
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++..-..|=...++.|+-+.+++. +.++.- ......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~~~-- 49 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--HRHVVV---------------------------------ATGCGE-- 49 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--TCEEEE---------------------------------ECCCSS--
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEEE---------------------------------EeCCCc--
Confidence 3568999998766777778888888877642 222210 001111
Q ss_pred ChHHHHH---HHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNA---ALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~---i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.... .++.+...++|++|+.+.+.+.... +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 50 -~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 112 (290)
T 2rgy_A 50 -STPREQALEAVRFLIGRDCDGVVVISHDLHDEDL----DELHRMH--PKMVFL----NRAFDALPD-ASFCPDH 112 (290)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHH----HHHHHHC--SSEEEE----SSCCTTSGG-GEECCCH
T ss_pred -hhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHH----HHHhhcC--CCEEEE----ccccCCCCC-CEEEeCc
Confidence 112234 6778888999999999987653222 2333344 678765 444433221 4677664
No 81
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=42.74 E-value=1.7e+02 Score=27.80 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=60.2
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
.+|||++..-..|-...++.|+-+.++.. +.++. +..+. .+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 44 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--GYEAT---------------------------------IFDSQ---NDT 44 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---TCH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CCH
Confidence 58999998777777888888888877642 22211 00011 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCC-cChhh
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETN-VGFDT 244 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S-~GFdT 244 (623)
+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |++.+......+ +++|.
T Consensus 45 ~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~~V~~D~ 107 (290)
T 2fn9_A 45 AKESAHFDAIIAAGYDAIIFNPTDADGSI-ANV-KRAKEAG--IPVFCV----DRGINARGLAVAQIYSDN 107 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSCSSSSSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCChHHHH-HHH-HHHHHCC--CeEEEE----ecCCCCCCceEEEEeCCH
Confidence 33445677788889999999987654211 112 3344444 677765 444433221134 77764
No 82
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=42.56 E-value=85 Score=30.27 Aligned_cols=105 Identities=11% Similarity=0.157 Sum_probs=62.1
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..+||+++.....|=...++.|+-+.+.+. +.++. +....
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~--- 59 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR--GYQLL---------------------------------IACSE--- 59 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEcCC---
Confidence 34578999998777777788888888877642 22221 10111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.+.....++.+...++|++|+.+.+.+.. .+.+.+.+. +++||.+ |.+.....+ .++++|-
T Consensus 60 ~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~--~iPvV~~----~~~~~~~~~-~~V~~d~ 122 (293)
T 2iks_A 60 DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEH---PFYQRWAND--PFPIVAL----DRALDREHF-TSVVGAD 122 (293)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSSCTTC---HHHHTTTTS--SSCEEEE----ESCCCTTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcH---HHHHHHHhC--CCCEEEE----CCccCcCCC-CEEEecC
Confidence 1233345567888889999999998765431 122333333 4777765 444433222 4676664
No 83
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=41.52 E-value=93 Score=29.99 Aligned_cols=98 Identities=10% Similarity=0.081 Sum_probs=51.4
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
.+||+|++||... ....+.+++....-+.+|.++.--.. + ..+..+...=|-...--.+.++.+
T Consensus 3 m~ki~vl~sG~g~-----~~~~~l~~l~~~~l~~~I~~Vit~~~-----~------~~v~~~A~~~gIp~~~~~~~~~~~ 66 (212)
T 3av3_A 3 MKRLAVFASGSGT-----NFQAIVDAAKRGDLPARVALLVCDRP-----G------AKVIERAARENVPAFVFSPKDYPS 66 (212)
T ss_dssp CEEEEEECCSSCH-----HHHHHHHHHHTTCCCEEEEEEEESST-----T------CHHHHHHHHTTCCEEECCGGGSSS
T ss_pred CcEEEEEEECCcH-----HHHHHHHHHHhCCCCCeEEEEEeCCC-----C------cHHHHHHHHcCCCEEEeCcccccc
Confidence 3699999999843 23344455443222456666552110 0 122222333343333223334445
Q ss_pred hHHHH-HHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 006961 174 TEQVN-AALTACKNLNLDGLVIIGGVTSNTDAAYLA 208 (623)
Q Consensus 174 ~e~~~-~i~~~l~~~~Id~LviIGGdgS~~~A~~La 208 (623)
.+.++ ..++.+++++.|.+|+.| .+-.-....|.
T Consensus 67 ~~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l~ 101 (212)
T 3av3_A 67 KAAFESEILRELKGRQIDWIALAG-YMRLIGPTLLS 101 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEch-hhhhCCHHHHh
Confidence 55554 567889999999777664 55544444443
No 84
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=41.02 E-value=1.2e+02 Score=29.16 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=52.7
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
+||+|+.||.-+ ....++++++....+.+|.++.--.. + ..+..+...=|-...--.+.++.+.
T Consensus 1 ~ri~vl~Sg~gs-----nl~ali~~~~~~~~~~~i~~Vis~~~-----~------~~~~~~A~~~gIp~~~~~~~~~~~r 64 (212)
T 1jkx_A 1 MNIVVLISGNGS-----NLQAIIDACKTNKIKGTVRAVFSNKA-----D------AFGLERARQAGIATHTLIASAFDSR 64 (212)
T ss_dssp CEEEEEESSCCH-----HHHHHHHHHHTTSSSSEEEEEEESCT-----T------CHHHHHHHHTTCEEEECCGGGCSSH
T ss_pred CEEEEEEECCcH-----HHHHHHHHHHcCCCCceEEEEEeCCC-----c------hHHHHHHHHcCCcEEEeCcccccch
Confidence 489999999763 25666666554333467776662110 0 0112222233333333333344454
Q ss_pred HHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 006961 175 EQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLA 208 (623)
Q Consensus 175 e~~-~~i~~~l~~~~Id~LviIGGdgS~~~A~~La 208 (623)
+.+ +.+.+.+++++.|.+|+. |.+-.-....|.
T Consensus 65 ~~~~~~~~~~l~~~~~Dliv~a-gy~~il~~~~l~ 98 (212)
T 1jkx_A 65 EAYDRELIHEIDMYAPDVVVLA-GFMRILSPAFVS 98 (212)
T ss_dssp HHHHHHHHHHHGGGCCSEEEES-SCCSCCCHHHHH
T ss_pred hhccHHHHHHHHhcCCCEEEEe-ChhhhCCHHHHh
Confidence 444 356788999999977666 455444444444
No 85
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=40.76 E-value=22 Score=38.40 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+.+..+++.+.+++ +.|.+|-|||--.+..|..+| ++ + .+++|.||-|
T Consensus 131 ~~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA-~~--~--giP~I~IPTT 178 (450)
T 1ta9_A 131 SLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIA-HS--M--NLPSIICPTT 178 (450)
T ss_dssp CHHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHH-HH--T--TCCEEEEESS
T ss_pred CHHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHH-Hh--c--CCCEEEEeCC
Confidence 34678888888888 999999999988888887777 33 2 4899999988
No 86
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=39.99 E-value=1.3e+02 Score=29.09 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=52.3
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
.+||+|+.||+ | +| ...++++.+.-.-..+|.++.- ++- ...+..+-..=|-...--.+..+.+
T Consensus 2 m~riavl~Sg~---G-sn-l~ali~~~~~~~l~~eI~~Vis-------n~~----~a~v~~~A~~~gIp~~~~~~~~~~~ 65 (211)
T 3p9x_A 2 MKRVAIFASGS---G-TN-AEAIIQSQKAGQLPCEVALLIT-------DKP----GAKVVERVKVHEIPVCALDPKTYPS 65 (211)
T ss_dssp -CEEEEECCTT---C-HH-HHHHHHHHHTTCCSSEEEEEEE-------SCS----SSHHHHHHHTTTCCEEECCGGGSSS
T ss_pred CCEEEEEEeCC---c-hH-HHHHHHHHHcCCCCcEEEEEEE-------CCC----CcHHHHHHHHcCCCEEEeChhhcCc
Confidence 36999999995 4 22 5666666543222346666552 110 0122222223332222222333445
Q ss_pred hHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHHHH
Q 006961 174 TEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 209 (623)
Q Consensus 174 ~e~~-~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae 209 (623)
.+.+ +.+++.+++++.|.+|+.| .+-.-....|..
T Consensus 66 r~~~d~~~~~~l~~~~~Dliv~ag-y~~Il~~~~l~~ 101 (211)
T 3p9x_A 66 KEAYEIEVVQQLKEKQIDFVVLAG-YMRLVGPTLLGA 101 (211)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEeC-chhhcCHHHHhh
Confidence 5444 4567899999999777775 554444455543
No 87
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.74 E-value=2.7e+02 Score=26.88 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=63.2
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..+|||++..-.-|=...++.|+-+.+.+. |.+++-+ .+..
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~~-- 55 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--STDVLLG---------------------------------QIDA-- 55 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--TCCEEEE---------------------------------ECCS--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCCC--
Confidence 44578999999888888889999998887643 2222211 1111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+...+.++.+...++||+|+.+.+.+.. ..+ +.+.+ +++||.+ |++... .+ .++++|-
T Consensus 56 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~--~~~-~~l~~---~iPvV~i----~~~~~~-~~-~~V~~D~ 115 (303)
T 3kke_A 56 -PPRGTQQLSRLVSEGRVDGVLLQRREDFDD--DML-AAVLE---GVPAVTI----NSRVPG-RV-GSVILDD 115 (303)
T ss_dssp -TTHHHHHHHHHHHSCSSSEEEECCCTTCCH--HHH-HHHHT---TSCEEEE----SCCCTT-CC-CEEEECH
T ss_pred -ChHHHHHHHHHHHhCCCcEEEEecCCCCcH--HHH-HHHhC---CCCEEEE----CCcCCC-CC-CEEEECc
Confidence 223445678889999999999999876643 122 33333 4788765 444443 21 4677663
No 88
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=39.42 E-value=33 Score=35.87 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecc
Q 006961 173 TTEQVNAALTACKNLNL---DGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTL 227 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~I---d~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTI 227 (623)
+.+..+++.+.+++.++ |.+|-+||--....|...|-.+ .+| +++|.||-|.
T Consensus 76 ~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 130 (368)
T 2gru_A 76 TLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FRG--IALIHVPTTF 130 (368)
T ss_dssp SHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 56788899999999995 8999999977777766665432 234 8999999875
No 89
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=39.39 E-value=2.9e+02 Score=27.19 Aligned_cols=87 Identities=15% Similarity=0.044 Sum_probs=55.9
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++..-.-|-...++.|+-+.+.+. |.++.-+ .+. .
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~ 102 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--GYQMLIG---------------------------------NSH---Y 102 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--TCEEEEE---------------------------------ECT---T
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---C
Confidence 4568999998888888888999998887642 3333211 010 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+.+...+.++.+...++||+|+.+-+.+... .+.+.+.+ ++||.+
T Consensus 103 ~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~ 147 (339)
T 3h5o_A 103 DAGQELQLLRAYLQHRPDGVLITGLSHAEPF----ERILSQHA--LPVVYM 147 (339)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEEECSCCCTTH----HHHHHHTT--CCEEEE
T ss_pred ChHHHHHHHHHHHcCCCCEEEEeCCCCCHHH----HHHHhcCC--CCEEEE
Confidence 2334456778888999999999997655322 23333444 677766
No 90
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.09 E-value=2.2e+02 Score=27.97 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=60.6
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++..-..|-...++.|+-+.+... +.++. +..+. .
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 103 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMY--KYNMI---------------------------------LANSD---N 103 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEECC---C
Confidence 4568999998766777778888888877642 22221 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.....++.+...++|++|+.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 104 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 164 (332)
T 2o20_A 104 DVEKEEKVLETFLSKQVDGIVYMGSSLDEKI---R-TSLKNSR--TPVVLV----GTIDGDKEI-PSVNIDY 164 (332)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECSSCCCHHH---H-HHHHHHC--CCEEEE----SCCCTTSCS-CEEECCH
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCCCCHHH---H-HHHHhCC--CCEEEE----ccccCCCCC-CEEEeCh
Confidence 2333455678888899999999987654322 2 2233344 677765 443332221 4676663
No 91
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=38.71 E-value=2.3e+02 Score=27.90 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 222 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIG 222 (623)
+++..+.+++.++++++|.++. +-+.....++.+++.+.+.| ++++|
T Consensus 57 ~~~~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g--~~~~~ 103 (331)
T 2pn1_A 57 EVEYIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIG--VTVIV 103 (331)
T ss_dssp STTHHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTT--CEECC
T ss_pred ChhHHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCC--cEEec
Confidence 3445788889999999998765 43444445555677776555 44443
No 92
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=38.51 E-value=78 Score=30.61 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=60.1
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..+|||++ .-.-|-...++.|+-+.+.+. +.++.-+. ....
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~~~- 52 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRR--GYDVMLSA---------------------------------VAPS- 52 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------EBTT-
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CCCC-
Confidence 3457899999 777777888888988887643 33332111 0111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+ ..+.++.+...++|++|+.+.+.+.. .+ +.+.+ +++||. +|++.....+ .++++|-
T Consensus 53 --~~-~~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~~~~---~iPvV~----i~~~~~~~~~-~~V~~D~ 110 (289)
T 3k9c_A 53 --RA-EKVAVQALMRERCEAAILLGTRFDTD---EL-GALAD---RVPALV----VARASGLPGV-GAVRGDD 110 (289)
T ss_dssp --BC-HHHHHHHHTTTTEEEEEEETCCCCHH---HH-HHHHT---TSCEEE----ESSCCSSTTS-EEEEECH
T ss_pred --HH-HHHHHHHHHhCCCCEEEEECCCCCHH---HH-HHHHc---CCCEEE----EcCCCCCCCC-CEEEeCh
Confidence 11 23467778889999999999877642 22 23332 478875 4555543332 4666663
No 93
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=38.09 E-value=61 Score=30.79 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=61.3
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
..+||+++..-..|-...++.|+-+.+++. +.++ ++..+. .+
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~---------------------------------~~~~~~---~~ 44 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--GYQL---------------------------------LLGYSD---YS 44 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--SCEE---------------------------------CCEECT---TC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--CCEE---------------------------------EEEcCC---CC
Confidence 358999998777777788888888877642 2211 111111 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+...+.++.+...++|++|+.+.+.+.... +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 45 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 104 (275)
T 3d8u_A 45 IEQEEKLLSTFLESRPAGVVLFGSEHSQRTH----QLLEASN--TPVLEI----AELSSKASY-LNIGVDH 104 (275)
T ss_dssp HHHHHHHHHHHHTSCCCCEEEESSCCCHHHH----HHHHHHT--CCEEEE----SSSCSSSSS-EEECBCH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE----eeccCCCCC-CEEEECh
Confidence 3344567788888999999999877653222 2333344 688765 444433222 4677774
No 94
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=36.70 E-value=2.8e+02 Score=26.19 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=60.0
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
++|||++..-..|-...++.|+-+.++.. +.+++ +..+. .+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 43 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLV---------------------------------VLDSQ---NNP 43 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TCH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHc--CcEEE---------------------------------EeCCC---CCH
Confidence 58999998777777788888888877643 22221 11111 122
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+...+.++.+...++|++|+.+.+..... . ..+.+.+.+ ++||.+ |++........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~-~~~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~ 105 (271)
T 2dri_A 44 AKELANVQDLTVRGTKILLINPTDSDAVG-N-AVKMANQAN--IPVITL----DRQATKGEVVSHIASDN 105 (271)
T ss_dssp HHHHHHHHHHTTTTEEEEEECCSSTTTTH-H-HHHHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChHHHH-H-HHHHHHHCC--CcEEEe----cCCCCCCceeEEEecCh
Confidence 33345677888899999999876543211 1 123334444 677754 55554322223677663
No 95
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=35.06 E-value=2.7e+02 Score=28.86 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 173 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 173 t~e~~~~i~~~l~~~---~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+.. +...+||-.=
T Consensus 70 ~~~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTG 122 (334)
T 3nxk_A 70 CDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTI--KSDKPVVLVG 122 (334)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHc--CCCCCEEEEC
Confidence 567777777777664 7999999999999977554444443 4456676553
No 96
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=34.98 E-value=1.4e+02 Score=28.81 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=49.4
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEcc---ChhhhhcCCeeecCHhHHhchhhcCCcccccCcC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLG---GSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK 168 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~---G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R 168 (623)
..++||+|+.||.. -| ...+++++....-..+|.++.- ...|+ + +-..=|-...--.+
T Consensus 5 m~~~ri~vl~SG~g---sn--l~all~~~~~~~l~~~I~~Visn~~~a~~l-------------~-~A~~~gIp~~~~~~ 65 (209)
T 4ds3_A 5 MKRNRVVIFISGGG---SN--MEALIRAAQAPGFPAEIVAVFSDKAEAGGL-------------A-KAEAAGIATQVFKR 65 (209)
T ss_dssp -CCEEEEEEESSCC---HH--HHHHHHHHTSTTCSEEEEEEEESCTTCTHH-------------H-HHHHTTCCEEECCG
T ss_pred CCCccEEEEEECCc---HH--HHHHHHHHHcCCCCcEEEEEEECCcccHHH-------------H-HHHHcCCCEEEeCc
Confidence 44689999999983 22 3445555432222346666652 11221 1 11112322222223
Q ss_pred CCCCChHHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHH
Q 006961 169 DQIRTTEQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYL 207 (623)
Q Consensus 169 ~k~~t~e~~-~~i~~~l~~~~Id~LviIGGdgS~~~A~~L 207 (623)
..+.+.+.+ +.+++.+++++.|.+|+.| .+-.-....|
T Consensus 66 ~~~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l 104 (209)
T 4ds3_A 66 KDFASKEAHEDAILAALDVLKPDIICLAG-YMRLLSGRFI 104 (209)
T ss_dssp GGSSSHHHHHHHHHHHHHHHCCSEEEESS-CCSCCCHHHH
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEec-cccCcCHHHH
Confidence 334444444 4677899999999877775 4443333334
No 97
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=34.75 E-value=74 Score=30.89 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=59.0
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCC---------eeecCHhHHhchhhcCCcccccCcC
Q 006961 98 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK---------TLEVTKEILSTYKNQGGYDMLGRTK 168 (623)
Q Consensus 98 gIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~---------~~eLt~~~v~~~~n~GG~~~lGS~R 168 (623)
++|++||+.|-.- .....++|.-+|..=|++.. +=.++++.++.|...|- .++-...
T Consensus 4 ~~I~~gG~~~~~~-------------~~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~-~i~~~~~ 69 (218)
T 3ihk_A 4 VALFSGGDLTYFT-------------RDFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAK-KLVMAPA 69 (218)
T ss_dssp EEEECSSCCSCCC-------------CCCSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCS-SEEECCS
T ss_pred EEEEECCCCccCc-------------ccCCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCC-eEEECCC
Confidence 5677788876321 11357888988888877643 33566777777776643 3443222
Q ss_pred CCCCChHHHHHHHHHHHHc-CCCEEEEecCcch
Q 006961 169 DQIRTTEQVNAALTACKNL-NLDGLVIIGGVTS 200 (623)
Q Consensus 169 ~k~~t~e~~~~i~~~l~~~-~Id~LviIGGdgS 200 (623)
. ++.-++++|++.+.++ +.+-++++|+-|.
T Consensus 70 e--KD~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 70 E--KNDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp S--CSSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred C--CCCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 2 2445789999998887 7999999999886
No 98
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=33.12 E-value=32 Score=33.34 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=59.8
Q ss_pred CceEEEEEecCCCC--CchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 93 PAIRVGIVFCGRQS--PGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 93 ~~~~IgIv~sGG~a--PG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
+..+|||++..-.- |=...++.|+-+.+.+ .+.++.-+. ..+
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~------------------------~~~---------- 50 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST--TQYHLVVTP------------------------HIH---------- 50 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--SSCEEEECC------------------------BSS----------
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH--cCCEEEEec------------------------CCc----------
Confidence 45789999987554 7788888888877653 233322110 000
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+....+.+.+...++|++|+.+.+.+.... +.+.+.+ ++||. +|++.....+ .++++|-
T Consensus 51 --~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~----i~~~~~~~~~-~~V~~D~ 111 (288)
T 3gv0_A 51 --AKDSMVPIRYILETGSADGVIISKIEPNDPRV----RFMTERN--MPFVT----HGRSDMGIEH-AFHDFDN 111 (288)
T ss_dssp --GGGTTHHHHHHHHHTCCSEEEEESCCTTCHHH----HHHHHTT--CCEEE----ESCCCSSCCC-EEEEECH
T ss_pred --chhHHHHHHHHHHcCCccEEEEecCCCCcHHH----HHHhhCC--CCEEE----ECCcCCCCCC-cEEEeCc
Confidence 01112345566788999999999866443222 3344444 78874 5665544332 4666664
No 99
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=32.85 E-value=32 Score=29.40 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEeeecccCCCC
Q 006961 200 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232 (623)
Q Consensus 200 S~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~ 232 (623)
.......|.+.+++.+...-|||.|++.||...
T Consensus 36 ~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 36 LEEDVEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 344556677777777777788888888887653
No 100
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=31.76 E-value=1.8e+02 Score=27.88 Aligned_cols=102 Identities=11% Similarity=0.027 Sum_probs=58.7
Q ss_pred ceEEEEEecC-C---CCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCC
Q 006961 94 AIRVGIVFCG-R---QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKD 169 (623)
Q Consensus 94 ~~~IgIv~sG-G---~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~ 169 (623)
..+||+++.. - ..|-...++.|+-+.+++. +.++. +..+..
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~ 48 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--NYFVL---------------------------------PFPFSE 48 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--TCEEE---------------------------------ECCCCS
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCCC
Confidence 4689999876 4 6778888889998887642 22221 000001
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 170 QIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 170 k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
... ...+.++.+...++|++|+.+.+.+.. ..+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 49 ~~~---~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 109 (287)
T 3bbl_A 49 DRS---QIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQK--FPFVAF----GRSNPDWDF-AWVDIDG 109 (287)
T ss_dssp STT---CCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTT--CCEEEE----SCCSTTCCC-CEEEECH
T ss_pred chH---HHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcC--CCEEEE----CCcCCCCCC-CEEEecc
Confidence 111 112456778889999999998765422 123344444 778765 444432221 4677663
No 101
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=31.68 E-value=2.3e+02 Score=27.29 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=61.0
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
+.+||+++.....|-...++.|+-+.+... +.++. +..+. .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~l~---------------------------------~~~~~---~~ 43 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLK---------------------------------IADGQ---QK 43 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CC
Confidence 468999998877787888888888877643 22211 10111 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCC---CCCCcChhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQF---VETNVGFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~---ie~S~GFdT 244 (623)
.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |++....+ .-.++++|-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~~~~V~~D~ 109 (306)
T 2vk2_A 44 QENQIKAVRSFVAQGVDAIFIAPVVATGWE-PVL-KEAKDAE--IPVFLL----DRSIDVKDKSLYMTTVTADN 109 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSSSSCH-HHH-HHHHHTT--CCEEEE----SSCCCCSCGGGSSEEEECCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhHH-HHH-HHHHHCC--CCEEEe----cCCCCCCCccceEEEEecCH
Confidence 333445678888899999999987654211 112 2333344 678765 44443221 114666663
No 102
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=31.63 E-value=1.9e+02 Score=28.27 Aligned_cols=106 Identities=12% Similarity=-0.028 Sum_probs=60.3
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 94 ~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
..+||+++..-..|=...++.|+-+.+++. +.++. +...+. .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~~~---~d 45 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKAL--GIDVT--------------------------------YDGPTE---PS 45 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHH--TCEEE--------------------------------ECCCSS---CC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHh--CCEEE--------------------------------EECCCC---CC
Confidence 368999987766677777778887776643 11111 111111 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCc-Chhh
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV-GFDT 244 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~-GFdT 244 (623)
.+.....++.+...++|+||+.+-+.+... ..+ +.+.+.| ++||.+ |.++........+ ++|-
T Consensus 46 ~~~q~~~i~~li~~~vdgiii~~~~~~~~~-~~~-~~a~~~g--ipvV~~----d~~~~~~~~~~~v~~~D~ 109 (316)
T 1tjy_A 46 VSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-PAL-KRAMQRG--VKILTW----DSDTKPECRSYYINQGTP 109 (316)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSSSTTH-HHH-HHHHHTT--CEEEEE----SSCCCGGGCSEEEESCCH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-HHH-HHHHHCc--CEEEEe----cCCCCCCCceEEEecCCH
Confidence 344455678888899999999887654211 122 2333444 788876 4444322212456 6764
No 103
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=31.28 E-value=2.3e+02 Score=27.06 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHc-CCCEEEEecCcchHHHHHHHHHHHHhcCC---CCeEEEe
Q 006961 174 TEQVNAALTACKNL-NLDGLVIIGGVTSNTDAAYLAETFAEAKC---PTKVVGV 223 (623)
Q Consensus 174 ~e~~~~i~~~l~~~-~Id~LviIGGdgS~~~A~~Lae~~~~~g~---~i~VIGV 223 (623)
++.++.+.+.++++ ++++++|++.+|.+... ..+.+++.|. ++.|+|.
T Consensus 180 ~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g--~~~al~~~g~~v~di~vvG~ 231 (306)
T 8abp_A 180 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG--GVRATEGQGFKAADIIGIGI 231 (306)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEECSSHHHHHH--HHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCcHHHHH--HHHHHHHcCCCCCceEEEEe
Confidence 44555666666654 79998888888876543 3355667776 4667764
No 104
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=31.07 E-value=2e+02 Score=29.32 Aligned_cols=97 Identities=8% Similarity=0.012 Sum_probs=48.7
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
.++||+|+.||.- + ....+.++.+.-.-..+|.++.---.. +..+...-|-...--...+..
T Consensus 104 ~~~ri~vl~Sg~g----~-nl~~ll~~~~~g~l~~~I~~Visn~~~-------------~~~~A~~~gIp~~~~~~~~~~ 165 (302)
T 3o1l_A 104 QKKRVVLMASRES----H-CLADLLHRWHSDELDCDIACVISNHQD-------------LRSMVEWHDIPYYHVPVDPKD 165 (302)
T ss_dssp SCCEEEEEECSCC----H-HHHHHHHHHHTTCSCSEEEEEEESSST-------------THHHHHTTTCCEEECCCCSSC
T ss_pred CCcEEEEEEeCCc----h-hHHHHHHHHHCCCCCcEEEEEEECcHH-------------HHHHHHHcCCCEEEcCCCcCC
Confidence 4689999999982 2 255555554432223566665521111 111222223222221112222
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA 208 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~La 208 (623)
.++.-+++++.+++++.|.+|+.| .+-.-....|.
T Consensus 166 r~~~~~~~~~~l~~~~~DliVlag-ym~IL~~~~l~ 200 (302)
T 3o1l_A 166 KEPAFAEVSRLVGHHQADVVVLAR-YMQILPPQLCR 200 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS-CCSCCCTTHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEHhH-hhhhcCHHHHh
Confidence 233345678999999999766654 54433333443
No 105
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=30.77 E-value=2.2e+02 Score=27.18 Aligned_cols=103 Identities=8% Similarity=0.094 Sum_probs=55.2
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++..-..|=...++.|+-+.+++. +.++.-+. +..+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~-----------------------~~~~------------ 49 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKN--GYNLIIVY-----------------------SGSA------------ 49 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTT--TCEEEEEC---------------------------------------
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCeEEEEe-----------------------CCCC------------
Confidence 4568999998888888888999998887632 33222110 0000
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.....++.+...++|++|+.+.+.+. . ..+.+.+. +++||.+- .+.... -.++++|-
T Consensus 50 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~-~~~~l~~~--~iPvV~~~----~~~~~~--~~~V~~D~ 109 (290)
T 3clk_A 50 DPEEQKHALLTAIERPVMGILLLSIALTD---D-NLQLLQSS--DVPYCFLS----MGFDDD--RPFISSDD 109 (290)
T ss_dssp ------CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEES----CC--CC--SCEEECCH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecccCCH---H-HHHHHHhC--CCCEEEEc----CCCCCC--CCEEEeCh
Confidence 01112235667778899999999877542 1 22334333 47887663 333322 14667664
No 106
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=30.55 E-value=20 Score=26.87 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.4
Q ss_pred hhhhccChhHHHhhhhcC
Q 006961 372 SALFEFLPPFIKKQLLLQ 389 (623)
Q Consensus 372 ~~lf~~lp~~i~~~l~~~ 389 (623)
.++|+.||..||++|+..
T Consensus 18 ~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGGTTTSCHHHHHHHTTC
T ss_pred HHHHHHCcHHHHHHHHhc
Confidence 579999999999998753
No 107
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=29.46 E-value=2.7e+02 Score=26.92 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+ |++.+....-.++++|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~ 105 (313)
T 2h3h_A 44 NAQLQMLESFIAEGVNGIAIAPSDPTAVI-PTI-KKALEMG--IPVVTL----DTDSPDSGRYVYIGTDN 105 (313)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCTTSCCSCEEECCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChHHHH-HHH-HHHHHCC--CeEEEe----CCCCCCcceeEEECcCH
Confidence 44455677788889999999887654211 112 3333444 788765 55544321125677664
No 108
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=29.32 E-value=41 Score=34.53 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCccccc--CcCCCCCChHHHHHHHHHHHHcCCCE
Q 006961 114 WGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDG 191 (623)
Q Consensus 114 ~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lG--S~R~k~~t~e~~~~i~~~l~~~~Id~ 191 (623)
+...+.+....+ .-+-+-+|..|-... -|.+....++..|= ..+- ++|+ .+.+.++..+..++.+||+.
T Consensus 32 ~~~~~~L~~~~p--d~vsVT~~~~g~~r~----~t~~~a~~i~~~g~-~~i~Hltc~~--~~~~~l~~~L~~~~~~GI~n 102 (310)
T 3apt_A 32 FRTLEELKAFRP--AFVSITYGAMGSTRE----RSVAWAQRIQSLGL-NPLAHLTVAG--QSRKEVAEVLHRFVESGVEN 102 (310)
T ss_dssp HHHHHHHGGGCC--SEEEECCCSTTCSHH----HHHHHHHHHHHTTC-CBCEEEECTT--SCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHhcCCC--CEEEEecCCCCCcch----hHHHHHHHHHHhCC-CeEEEeecCC--CCHHHHHHHHHHHHHCCCCE
Confidence 334455544332 345566666653221 23444555553332 2221 3555 46788999999999999999
Q ss_pred EEEecCcch------------HHHHHHHHHHHHhc-C--CCCeEEEee
Q 006961 192 LVIIGGVTS------------NTDAAYLAETFAEA-K--CPTKVVGVP 224 (623)
Q Consensus 192 LviIGGdgS------------~~~A~~Lae~~~~~-g--~~i~VIGVP 224 (623)
++++.||-. +..|..|-++.++. | ..+-|.+-|
T Consensus 103 iLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 103 LLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp EEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred EEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 999999932 44688888887776 4 344444444
No 109
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.91 E-value=77 Score=31.59 Aligned_cols=97 Identities=11% Similarity=0.086 Sum_probs=57.9
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..+||+++..-.-|-...++.|+-+.+... |.++.-+. ...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~~-- 104 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--GYQMLVAE---------------------------------ANS-- 104 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEEEEE---------------------------------CCS--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--CCEEEEEC---------------------------------CCC--
Confidence 34578999998877788888889998887643 33332110 111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
.+.....++.+...++|++|+.+. + +.+.+. +++||.+ |++.....+ .++++|-
T Consensus 105 --~~~~~~~~~~l~~~~vdGiIi~~~---------~-~~~~~~--~iPvV~~----~~~~~~~~~-~~V~~D~ 158 (333)
T 3jvd_A 105 --VQAQDVVMESLISIQAAGIIHVPV---------V-GSIAPE--GIPMVQL----TRGELGPGF-PRVLCDD 158 (333)
T ss_dssp --HHHHHHHHHHHHHHTCSEEEECCC---------T-TCCC-C--CSCEEEE----CC----CCS-CEEEECH
T ss_pred --hHHHHHHHHHHHhCCCCEEEEcch---------H-HHHhhC--CCCEEEE----CccCCCCCC-CEEEECh
Confidence 233456788888999999999987 1 222223 4777754 555543222 4667663
No 110
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=28.72 E-value=3.9e+02 Score=25.42 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=53.9
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCC-EEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKS-TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRT 173 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~-~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t 173 (623)
.+|||++..-..|-...++.|+-+.+... +. ++. +..+. .+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~---------------------------------~~~~~---~~ 44 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--PDVQLL---------------------------------MNDSQ---ND 44 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--TTEEEE---------------------------------EEECT---TC
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--CCeEEE---------------------------------EecCC---CC
Confidence 68999998777787888888988887632 21 111 10011 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
.+.....++.+...++|++|+.+.+.+... ...+.+.+.+ ++||.+
T Consensus 45 ~~~~~~~~~~~~~~~vdgiii~~~~~~~~~--~~~~~~~~~~--iPvV~~ 90 (309)
T 2fvy_A 45 QSKQNDQIDVLLAKGVKALAINLVDPAAAG--TVIEKARGQN--VPVVFF 90 (309)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSGGGHH--HHHHHHHTTT--CCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcchhH--HHHHHHHHCC--CcEEEe
Confidence 333445678888899999999987765221 1223344444 788765
No 111
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.31 E-value=2.1e+02 Score=26.00 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=57.5
Q ss_pred CceEEEEEecCCCCCchH-HHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~n-nVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
...+|-+.+.||+.--+- ++++.+++ ..|++|+-. | ...+.+.+-.....-+.+++|-|-..-
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~-----~~G~eVi~l--G---------~~~p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALR-----DAGFEVVYT--G---------LRQTPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHH-----HTTCEEECC--C---------SBCCHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHH-----HCCCEEEEC--C---------CCCCHHHHHHHHHhcCCCEEEEEeech
Confidence 456888888898775443 34444433 236777511 1 114555443333333447777665544
Q ss_pred CChHHHHHHHHHHHHcCC-CEEEEecCcchH
Q 006961 172 RTTEQVNAALTACKNLNL-DGLVIIGGVTSN 201 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~I-d~LviIGGdgS~ 201 (623)
.+.+.+.+.++.|++.+. +..|++||.-..
T Consensus 81 ~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~ 111 (161)
T 2yxb_A 81 AHLHLMKRLMAKLRELGADDIPVVLGGTIPI 111 (161)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCEEEEECCCH
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Confidence 456788899999999887 688999996543
No 112
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=28.19 E-value=53 Score=33.73 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccc--cCcCCCCCChHHHHHHHHHHHHcCCC
Q 006961 113 VWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDML--GRTKDQIRTTEQVNAALTACKNLNLD 190 (623)
Q Consensus 113 I~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~l--GS~R~k~~t~e~~~~i~~~l~~~~Id 190 (623)
++..++.+...+| ..+-+-.|..|..... |.+....+.+.=|...+ =+||+ .+.+.++..+..+..+||+
T Consensus 41 l~~~~~~l~~l~p--~fvsVT~gagg~~r~~----t~~~a~~i~~~~g~~~v~Hltc~~--~~~~~l~~~L~~~~~~GI~ 112 (304)
T 3fst_A 41 LWNSIDRLSSLKP--KFVSVTYGANSGERDR----THSIIKGIKDRTGLEAAPHLTCID--ATPDELRTIARDYWNNGIR 112 (304)
T ss_dssp HHHHHHHHHTTCC--SEEEECCCTTSSCHHH----HHHHHHHHHHHHCCCEEEEEESTT--SCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC--CEEEEeeCCCCcchhH----HHHHHHHHHHHhCCCeeEEeecCC--CCHHHHHHHHHHHHHCCCC
Confidence 4445566664444 3466777777643222 33344555553332222 13555 3678899999999999999
Q ss_pred EEEEecCcc------hHHHHHHHHHHHHhc-CCCCeEEEee
Q 006961 191 GLVIIGGVT------SNTDAAYLAETFAEA-KCPTKVVGVP 224 (623)
Q Consensus 191 ~LviIGGdg------S~~~A~~Lae~~~~~-g~~i~VIGVP 224 (623)
.++++.||- ....|..|-+++++. +..+.|.+-|
T Consensus 113 nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 113 HIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp EEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred EEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 999999984 344478888877664 3445555555
No 113
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=27.98 E-value=2e+02 Score=27.22 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=31.3
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEc
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFL 133 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~ 133 (623)
+..+|||++..-..|=...++.|+-+.+++. +.++.-+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~ 42 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--GYRLSVID 42 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--TCEEEEEC
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--CCEEEEEe
Confidence 4579999999888899999999999988754 56666554
No 114
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=27.88 E-value=63 Score=33.22 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeeccc
Q 006961 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLN 228 (623)
Q Consensus 174 ~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTID 228 (623)
...++.+++.|-+ ..|.++||||-.|. |..+|+|-+++.+.+.-.|-=+.=||
T Consensus 196 T~~RQ~av~~la~-~~D~miVVGg~nSS-NT~rL~eia~~~~~~ty~Ie~~~el~ 248 (297)
T 3dnf_A 196 TSLRQESVKKLAP-EVDVMIIIGGKNSG-NTRRLYYISKELNPNTYHIETAEELQ 248 (297)
T ss_dssp HHHHHHHHHHHGG-GSSEEEEESCTTCH-HHHHHHHHHHHHCSSEEEESSGGGCC
T ss_pred HHHHHHHHHHHHh-hCCEEEEECCCCCc-hhHHHHHHHHhcCCCEEEeCChHHCC
Confidence 3556666666665 59999999997764 34679998888775433333344444
No 115
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=27.36 E-value=1.3e+02 Score=29.63 Aligned_cols=94 Identities=27% Similarity=0.210 Sum_probs=58.9
Q ss_pred CCceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~ 171 (623)
.+..||||+..- +-|.++++-.|+.+.|++. || .+++-+++. +.|..|
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~~-----------G~---~~g~nv~~~------~~~a~g----------- 53 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKAK-----------GY---EEGKNLEFD------YKTAQG----------- 53 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHHT-----------TC---CBTTTEEEE------EEECTT-----------
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHhh-----------Cc---ccCCcEEEE------EEeCCC-----------
Confidence 456799999874 6799999999999998753 22 233323331 233333
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+......+++.+...+.|.+|.||..- +..++.. ..+++||.+-.|
T Consensus 54 -d~~~~~~~~~~l~~~~~DlIiai~t~a----a~a~~~~----~~~iPVVf~~v~ 99 (302)
T 3lkv_A 54 -NPAIAVQIARQFVGENPDVLVGIATPT----AQALVSA----TKTIPIVFTAVT 99 (302)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEESHHH----HHHHHHH----CSSSCEEEEEES
T ss_pred -CHHHHHHHHHHHHhcCCcEEEEcCCHH----HHHHHhh----cCCCCeEEEecC
Confidence 345567788889999999888876321 2222222 235788766543
No 116
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=27.25 E-value=4.4e+02 Score=25.61 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=58.3
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+|||++.. ..|=...++.|+-+.+... .+.++. +..+. .
T Consensus 5 ~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~-~g~~l~---------------------------------i~~~~---~ 46 (325)
T 2x7x_A 5 PHFRIGVAQCS-DDSWRHKMNDEILREAMFY-NGVSVE---------------------------------IRSAG---D 46 (325)
T ss_dssp -CCEEEEEESC-CSHHHHHHHHHHHHHHTTS-SSCEEE---------------------------------EEECT---T
T ss_pred CCeEEEEEecC-CCHHHHHHHHHHHHHHHHc-CCcEEE---------------------------------EeCCC---C
Confidence 35689999876 5566666777777765421 022221 10010 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.....++.+...++|++|+.+.+.+... ...+.+.+.+ ++||.+ |++......-.++++|-
T Consensus 47 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 110 (325)
T 2x7x_A 47 DNSKQAEDVHYFMDEGVDLLIISANEAAPMT--PIVEEAYQKG--IPVILV----DRKILSDKYTAYIGADN 110 (325)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSSHHHHH--HHHHHHHHTT--CCEEEE----SSCCSSSCSSEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH--HHHHHHHHCC--CeEEEe----CCCCCCcceeEEEecCH
Confidence 2334445677888899999999987654211 1223444444 678765 44443321124677664
No 117
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=27.14 E-value=1.4e+02 Score=31.09 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHH----cCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 173 TTEQVNAALTACKN----LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 173 t~e~~~~i~~~l~~----~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
+++++.++.+.+++ .+.|++||.=|-|||.-.+.+-.+.. +...+||-.=
T Consensus 71 t~~~w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTG 124 (337)
T 4pga_A 71 TNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQ--KTDKPIVVVG 124 (337)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHHHHc--CCCCCEEEeC
Confidence 56777777777776 47999999999999977554444443 4556777553
No 118
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=26.45 E-value=80 Score=30.03 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=54.8
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+|||++..-.-|=...++.|+-+.+.+. +.++.-+ ... .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~---~ 48 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--GYQVLIG---------------------------------NSD---N 48 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--TCCEEEE---------------------------------ECT---T
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---C
Confidence 4568999998877788888888888877643 2322211 000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHH-HHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE-TFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae-~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.....++.+...++|++|+.+.+. .. .+ .+.+.+ ++||. +|++..... ++++|-
T Consensus 49 ~~~~~~~~~~~l~~~~~dgiIi~~~~~--~~----~~~~l~~~~--iPvV~----~~~~~~~~~---~V~~D~ 106 (277)
T 3e61_A 49 DIKKAQGYLATFVSHNCTGMISTAFNE--NI----IENTLTDHH--IPFVF----IDRINNEHN---GISTNH 106 (277)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECGGGH--HH----HHHHHHHC---CCEEE----GGGCC------------H
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCh--HH----HHHHHHcCC--CCEEE----EeccCCCCC---eEEech
Confidence 234455678889999999999998321 11 23 344444 67764 566665433 666663
No 119
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.08 E-value=1.2e+02 Score=26.88 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=49.3
Q ss_pred eEEEEEecCCCCCchH-HHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhH-HhchhhcCCcccccCcCCCCC
Q 006961 95 IRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEI-LSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~n-nVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~-v~~~~n~GG~~~lGS~R~k~~ 172 (623)
.+|-+-+.||+.=-.- ++++.+++ ..|++|+-. + ...+.+. ++.....+- ++++.|-..-.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~-----~~G~~Vi~l---------G--~~~p~e~~v~~a~~~~~-d~v~lS~~~~~ 66 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFT-----NAGFNVVNI---------G--VLSPQELFIKAAIETKA-DAILVSSLYGQ 66 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHH-----HTTCEEEEE---------E--EEECHHHHHHHHHHHTC-SEEEEEECSST
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHH-----HCCCEEEEC---------C--CCCCHHHHHHHHHhcCC-CEEEEEecCcC
Confidence 4677778888632222 23333332 235666521 1 1344443 333443333 67666654444
Q ss_pred ChHHHHHHHHHHHHcCC-CEEEEecCcc
Q 006961 173 TTEQVNAALTACKNLNL-DGLVIIGGVT 199 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~I-d~LviIGGdg 199 (623)
+.+.+.+.++.|++.++ +..|++||.-
T Consensus 67 ~~~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 67 GEIDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp HHHHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred cHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 55667778888888877 6778888854
No 120
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=26.05 E-value=29 Score=31.82 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCC
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ 234 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~ 234 (623)
+.+.+++.+++.+.+-++||||-.-.+.+..+.+ ++.+--+|..+++|-.-+
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~Fp 132 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYYP 132 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEECC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEECC
Confidence 4567788888878889999999877666654332 478888999998886443
No 121
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=26.03 E-value=4.2e+02 Score=27.14 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 173 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 173 t~e~~~~i~~~l~~~----~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ ...+||-.=
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTG 119 (327)
T 1o7j_A 66 TGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVK--SDKPVVFVA 119 (327)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEeC
Confidence 567777777776665 79999999999999875544445443 445776543
No 122
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=25.84 E-value=4.7e+02 Score=25.45 Aligned_cols=92 Identities=14% Similarity=-0.012 Sum_probs=55.0
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+|||++..-..|-...++.|+-+.+++. |+. + ++..+. .
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----------g~~------l------------------~~~~~~---~ 45 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV-----------GLP------Y------------------VPLTTE---G 45 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH-----------TCC------E------------------EEEECT---T
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc-----------CCE------E------------------EEecCC---C
Confidence 3468999998777777888888888877642 211 1 010111 1
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLN--LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~--Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+.+.....++.+...+ +|++|+.+.+.+.. ..+.+.+.+.+ ++||.+-..
T Consensus 46 ~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~ 97 (332)
T 2rjo_A 46 SSEKGIADIRALLQKTGGNLVLNVDPNDSADA--RVIVEACSKAG--AYVTTIWNK 97 (332)
T ss_dssp CHHHHHHHHHHHHHHTTTCEEEEECCSSHHHH--HHHHHHHHHHT--CEEEEESCC
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHH--HHHHHHHHHCC--CeEEEECCC
Confidence 2334445677777888 99999998765421 11223333344 788876433
No 123
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=25.66 E-value=4e+02 Score=27.31 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 173 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 173 t~e~~~~i~~~l~~~----~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ ...+||-.=
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTG 119 (332)
T 2wlt_A 66 NEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLH--STKPVVLVG 119 (332)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHHHHHHHCC--CSSCEEEEC
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEEC
Confidence 567777777776664 79999999999999875544445443 445777543
No 124
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=25.50 E-value=53 Score=34.80 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEE
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 222 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIG 222 (623)
.+.+.+++.++++++|.++ +|.++.. +..+++.+.+.| ++++|
T Consensus 54 ~d~~~l~~~a~~~~id~vv-~g~e~~l--~~~~~~~l~~~G--i~~~G 96 (431)
T 3mjf_A 54 TDIAGLLAFAQSHDIGLTI-VGPEAPL--VIGVVDAFRAAG--LAIFG 96 (431)
T ss_dssp TCHHHHHHHHHHTTEEEEE-ECSHHHH--HTTHHHHHHHTT--CCEES
T ss_pred CCHHHHHHHHHHhCcCEEE-ECCchHH--HHHHHHHHHhcC--CCeeC
Confidence 3456777888888888654 4544432 244566666655 45554
No 125
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=25.21 E-value=68 Score=31.29 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=60.3
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCe---------eecCHhHHhchhhcCCcccccCcC
Q 006961 98 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKT---------LEVTKEILSTYKNQGGYDMLGRTK 168 (623)
Q Consensus 98 gIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~---------~eLt~~~v~~~~n~GG~~~lGS~R 168 (623)
++|++||+.|-... ... .....++|.-+|..=|++..+ =.++++.++.|...|= .++--..
T Consensus 4 ~~I~~gG~~~~~~~-------~~~--~~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~-~~~~~~~ 73 (222)
T 3mel_A 4 VLLVAGGNPSDWPT-------IEP--ATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTE-TLIQAPA 73 (222)
T ss_dssp EEEECSSCGGGCCC-------CCG--GGCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCS-SEEECCS
T ss_pred EEEEECCCCccchh-------HHh--hcCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCC-cEEECCc
Confidence 56777888763210 011 123578999999988877543 3456677777776653 2332222
Q ss_pred CCCCChHHHHHHHHHHHHcCCC-EEEEecCcch
Q 006961 169 DQIRTTEQVNAALTACKNLNLD-GLVIIGGVTS 200 (623)
Q Consensus 169 ~k~~t~e~~~~i~~~l~~~~Id-~LviIGGdgS 200 (623)
. ++..++++|++.+.+++-+ -++++||.|.
T Consensus 74 e--KD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 74 E--KDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp S--CSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred c--CCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 2 3456789999999999987 9999999874
No 126
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=24.91 E-value=61 Score=31.50 Aligned_cols=102 Identities=9% Similarity=0.025 Sum_probs=59.3
Q ss_pred CceEEEEEec----CCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcC
Q 006961 93 PAIRVGIVFC----GRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK 168 (623)
Q Consensus 93 ~~~~IgIv~s----GG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R 168 (623)
+..+|||++. .-.-|=...++.|+-+.+.+. |.++.-+. ..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~ 49 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--GLDLLLIP---------------------------------DE 49 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------EC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC
Confidence 3568999997 445566677788888777642 33332111 00
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 169 DQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 169 ~k~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
. . +......+.+...++||+|+.+.+.+.... +.+.+.+ ++||. +|.+.....+ .++++|-
T Consensus 50 ~-~---~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 110 (294)
T 3qk7_A 50 P-G---EKYQSLIHLVETRRVDALIVAHTQPEDFRL----QYLQKQN--FPFLA----LGRSHLPKPY-AWFDFDN 110 (294)
T ss_dssp T-T---CCCHHHHHHHHHTCCSEEEECSCCSSCHHH----HHHHHTT--CCEEE----ESCCCCSSCC-EEEEECH
T ss_pred C-h---hhHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhCC--CCEEE----ECCCCCCCCC-CEEEcCh
Confidence 1 0 112346777888999999999987654222 3344444 67774 4555443332 4666663
No 127
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=24.77 E-value=90 Score=31.94 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=30.8
Q ss_pred HHHhhccCceEEEEecCC-CccHHHHHhhhhcCCcEEEEC
Q 006961 258 TDALSAEKYYYFIRLMGR-RASHVALECTLQSHPNMVILG 296 (623)
Q Consensus 258 ~da~S~~k~~~fVevMGR-~aG~LAL~~aLat~pniilIp 296 (623)
...+...+.+.||=+||- |.||++|--.-...+|.++++
T Consensus 18 ~~~r~~g~~IgfVPTMG~LH~GHlsLv~~Ar~~~d~vVVS 57 (287)
T 3q12_A 18 RRWRQEGKRIALVPTMGNLHEGHMTLVDEAKTRADVVVVT 57 (287)
T ss_dssp HHHHHTTCCEEEEEECSSCCHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHcCCeEEEEcCCCcccHHHHHHHHHHHHhCCEEEEE
Confidence 344455677999999996 889999887777778887775
No 128
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=24.74 E-value=81 Score=29.98 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecC-cchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGG-VTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGG-dgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+++.+.+.+++.++.+++.+|.+.| .+.+-+ .++- ....+|||||-.
T Consensus 47 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~~ 94 (174)
T 3lp6_A 47 TPEAMFSYARGAAARGLEVIIAGAGGAAHLPG--MVAA-----ATPLPVIGVPVP 94 (174)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEEESSCCHHH--HHHH-----HCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCchhhhHH--HHHh-----ccCCCEEEeeCC
Confidence 6788888999999999996665544 333333 2332 235899999953
No 129
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=24.72 E-value=3.3e+02 Score=29.78 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=69.2
Q ss_pred CcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEe------------------------------cCcchHHHHHHHHH
Q 006961 160 GYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII------------------------------GGVTSNTDAAYLAE 209 (623)
Q Consensus 160 G~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviI------------------------------GGdgS~~~A~~Lae 209 (623)
|+ ||-.+|.-+ +.+.+++.++.+-.+++|.|..= ||-=|......|.+
T Consensus 161 G~-mLD~aR~f~-~~~~ik~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~ 238 (512)
T 1jak_A 161 SA-MLDVSRHFF-GVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVR 238 (512)
T ss_dssp EE-EEECSSSCC-CHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHH
T ss_pred ce-eeccCCCCC-CHHHHHHHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHH
Confidence 53 888888754 67889999999999999998632 34447788888999
Q ss_pred HHHhcCCCCeEEE--------------eeeccc-CC-------CCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCce
Q 006961 210 TFAEAKCPTKVVG--------------VPVTLN-GD-------LKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYY 267 (623)
Q Consensus 210 ~~~~~g~~i~VIG--------------VPKTID-ND-------l~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~ 267 (623)
|++++| |.||= -|.=-. +. .....-..+++-+.+.+++.++++.+. +... .+|+
T Consensus 239 yA~~rg--I~VIPEID~PGH~~a~l~aypeL~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~-~lFp-~~~i 314 (512)
T 1jak_A 239 YAASRH--LEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELA-ALTP-GRYL 314 (512)
T ss_dssp HHHHTT--CEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHH-HTCC-SSEE
T ss_pred HHHHcC--CEEEEccCCCchHHHHHHhCHHhcCcCCCCccccccCcCCcccCCCCHHHHHHHHHHHHHHH-HhCC-CCeE
Confidence 999888 56651 111100 00 000001145677788888888888886 3333 2567
Q ss_pred EEE--Ee
Q 006961 268 YFI--RL 272 (623)
Q Consensus 268 ~fV--ev 272 (623)
|+= |+
T Consensus 315 HiGgDE~ 321 (512)
T 1jak_A 315 HIGGDEA 321 (512)
T ss_dssp ECCCCCC
T ss_pred EECCccc
Confidence 664 55
No 130
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=24.66 E-value=2.6e+02 Score=26.15 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCC--CCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHc-CCC
Q 006961 114 WGLYDALKLHNP--KSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNL-NLD 190 (623)
Q Consensus 114 ~gl~~~l~~~~~--~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~-~Id 190 (623)
+.+.+++.+..+ +.+=+++..|..+..... +-..-..+.+...+|..+..........++.++.+.+.++++ +++
T Consensus 112 ~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~--~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (276)
T 3ksm_A 112 QLAARALLATLDLSKERNIALLRLRAGNASTD--QREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTID 189 (276)
T ss_dssp HHHHHHHHHHSCTTSCEEEEECBCCTTCHHHH--HHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCCchhHH--HHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCce
Confidence 455666665555 788889998764321100 000112222333345433322222333345566666777776 788
Q ss_pred EEEEecCcchHHHHHHHHHHHHhcCC--CCeEEEe
Q 006961 191 GLVIIGGVTSNTDAAYLAETFAEAKC--PTKVVGV 223 (623)
Q Consensus 191 ~LviIGGdgS~~~A~~Lae~~~~~g~--~i~VIGV 223 (623)
++++. +|.+ |.-+.+.+++.|. ++.|+|.
T Consensus 190 ai~~~--~d~~--a~g~~~al~~~g~p~di~vig~ 220 (276)
T 3ksm_A 190 GLFTP--NEST--TIGALVAIRQSGMSKQFGFIGF 220 (276)
T ss_dssp EEECC--SHHH--HHHHHHHHHHTTCTTSSEEEEE
T ss_pred EEEEC--Cchh--hhHHHHHHHHcCCCCCeEEEEe
Confidence 87654 3332 2223355666674 4666664
No 131
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=24.59 E-value=3e+02 Score=26.94 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=22.2
Q ss_pred CceEEEEEec--CCCCCchHHHHHHHHHHHHhcC
Q 006961 93 PAIRVGIVFC--GRQSPGGHNVVWGLYDALKLHN 124 (623)
Q Consensus 93 ~~~~IgIv~s--GG~aPG~nnVI~gl~~~l~~~~ 124 (623)
.+.+||+++. |..+|-+..+..|+-.++...|
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n 36 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFN 36 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHH
Confidence 4689999986 4455666777777776665544
No 132
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=24.54 E-value=1.2e+02 Score=29.40 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
.|++-++.+++..++++|+.+||---.|. +|.++.+.+ .| +++|.|.
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~--TA~k~~e~~--~~--i~lVvVT 73 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGD--TAMKALEMA--EG--LEVVVVT 73 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSH--HHHHHHHHC--TT--CEEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCCh--HHHHHHHHh--cC--CeEEEEe
Confidence 46788999999999999999999877665 778888866 34 7888887
No 133
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=24.44 E-value=2.9e+02 Score=28.64 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=61.8
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCC-CCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcc--cccCcCCCC
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNP-KSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD--MLGRTKDQI 171 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~-~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~--~lGS~R~k~ 171 (623)
+||.+|+ |-.|+.--. +.+++++++. + +.+++-+..|-. + ++..+.++.+.-..-.+ +.+.+-...
T Consensus 28 ~kI~~v~--Gtr~~~~~~-a~li~~l~~~-~~~~~~~~~~tG~h------~-~m~~~~~~~~~i~~~~~l~v~~~~~~~~ 96 (403)
T 3ot5_A 28 IKVMSIF--GTRPEAIKM-APLVLALEKE-PETFESTVVITAQH------R-EMLDQVLEIFDIKPDIDLDIMKKGQTLA 96 (403)
T ss_dssp EEEEEEE--CSHHHHHHH-HHHHHHHHTC-TTTEEEEEEECC------------CHHHHHHTTCCCSEECCCCC-CCCHH
T ss_pred ceEEEEE--ecChhHHHH-HHHHHHHHhC-CCCCcEEEEEecCc------H-HHHHHHHHhcCCCCCcccccCCCCCCHH
Confidence 4787777 677776555 7788888753 4 677766666643 0 23333333322222111 111111101
Q ss_pred -CChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 172 -RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 172 -~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
.+-.-+.++.+.+++.+-|.++++|+-.+.-.++..+. .. +|+|+.+-
T Consensus 97 ~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~---~~--~IPv~h~~ 145 (403)
T 3ot5_A 97 EITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATF---YQ--QKMLGHVE 145 (403)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHH---HT--TCEEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHH---Hh--CCCEEEEE
Confidence 12345667788899999999999987655443333332 23 47888764
No 134
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=24.21 E-value=5.8e+02 Score=28.49 Aligned_cols=86 Identities=14% Similarity=0.015 Sum_probs=57.7
Q ss_pred CcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcc-----------h---HHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 160 GYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT-----------S---NTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 160 G~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdg-----------S---~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
|+ |++.+|..+ +.+.+.+.++.+..+++|.|..==-|| + ......|.+|++++| |.||-.
T Consensus 153 G~-mlD~~R~~~-~~~~ik~~id~ma~~KlN~~h~Hl~DDq~~~~~wr~~Yp~~~~~~i~elv~yA~~rg--I~vv~~-- 226 (594)
T 2v5c_A 153 GI-VEGFYGTPW-THQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENK--VDFVFG-- 226 (594)
T ss_dssp EE-ECCCCSSCC-CHHHHHHHHHHHHHTTCCEEEECCTTCGGGTTTTTSCCCGGGHHHHHHHHHHHHHTT--CEEEEE--
T ss_pred ce-eeeecCCCC-CHHHHHHHHHHHHHhCCcEEEEecccCcccccccCCCCCHHHHHHHHHHHHHHHHCC--cEEEEe--
Confidence 54 888898654 678999999999999999988654343 1 225777889999888 566521
Q ss_pred cccCCCCCCCCCCCcChhhHHHHHHHHHHHHH
Q 006961 226 TLNGDLKNQFVETNVGFDTICKVNSQLISNVC 257 (623)
Q Consensus 226 TIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~ 257 (623)
| .+.++.+++-+.+-+.|..+...+.
T Consensus 227 -i-----~Pe~d~~~~~~~~~~~~~~l~~k~~ 252 (594)
T 2v5c_A 227 -I-----SPGIDIRFDGDAGEEDFNHLITKAE 252 (594)
T ss_dssp -E-----CGGGTCCCSTHHHHHHHHHHHHHHH
T ss_pred -c-----CCCccccCCCcchHHHHHHHHHHHH
Confidence 1 1223345555666666666666554
No 135
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=24.08 E-value=1.6e+02 Score=30.79 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 173 TTEQVNAALTACKNL--NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 173 t~e~~~~i~~~l~~~--~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.+..+ +...+||-.=.
T Consensus 84 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~-~~~kPVVlTGA 137 (358)
T 2him_A 84 TPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLE-NLGKPVIVTGS 137 (358)
T ss_dssp CHHHHHHHHHHHHHHGGGCSEEEEECCSTTHHHHHHHHHHHEE-TCCSCEEEECC
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHHHHHHh-cCCCCEEEeCC
Confidence 567777777777776 89999999999999775544444432 34567775433
No 136
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=23.38 E-value=2.7e+02 Score=27.18 Aligned_cols=99 Identities=11% Similarity=0.173 Sum_probs=60.1
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCe---------eecCHhHHhchhhcCCcccccCcC
Q 006961 98 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKT---------LEVTKEILSTYKNQGGYDMLGRTK 168 (623)
Q Consensus 98 gIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~---------~eLt~~~v~~~~n~GG~~~lGS~R 168 (623)
++|++||+.|= ....+.+. +. ...++|.-+|..=|++..+ =-++++.++.|.. ++- .
T Consensus 34 v~Iv~~G~~~~-~~~~~~~~---~~---~~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~-----~i~--~ 99 (231)
T 2omk_A 34 AIILANGEYPA-HELPLRLL---AE---AQFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS-----IIL--Q 99 (231)
T ss_dssp EEEECSSSCCC-SHHHHHHH---HH---CSCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG-----GEE--C
T ss_pred EEEEECCCCch-hHHHHHHH---hc---CCEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC-----EEE--e
Confidence 56667887762 22222222 21 2368999999988877543 2345555665551 111 1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCcc-----hHHHHHHHHHH
Q 006961 169 DQIRTTEQVNAALTACKNLNLDGLVIIGGVT-----SNTDAAYLAET 210 (623)
Q Consensus 169 ~k~~t~e~~~~i~~~l~~~~Id~LviIGGdg-----S~~~A~~Lae~ 210 (623)
..-++..+.++|+..+.+++.+-++++|+-| ++.+...|..+
T Consensus 100 ~~~kD~TD~e~Al~~a~~~g~~~I~i~Ga~GgRlDH~laNi~lL~~~ 146 (231)
T 2omk_A 100 ISDQETNDQTKAVHYLQSKGIRKIAIVGATGKREDHTLGNISLLVEY 146 (231)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCCEEEEESCSSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEECccCCchhHHHHHHHHHHHH
Confidence 1122345789999999999999999999966 45666666654
No 137
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=23.36 E-value=3e+02 Score=26.36 Aligned_cols=96 Identities=11% Similarity=0.196 Sum_probs=47.1
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCCh
Q 006961 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT 174 (623)
Q Consensus 95 ~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~ 174 (623)
+||+|+.||... ....+.+++.+.....+|.++.--.. + ..+..+...-|-...--...++.+.
T Consensus 2 ~rI~vl~SG~g~-----~~~~~l~~l~~~~~~~~i~~Vvs~~~-----~------~~~~~~A~~~gIp~~~~~~~~~~~r 65 (216)
T 2ywr_A 2 LKIGVLVSGRGS-----NLQAIIDAIESGKVNASIELVISDNP-----K------AYAIERCKKHNVECKVIQRKEFPSK 65 (216)
T ss_dssp EEEEEEECSCCH-----HHHHHHHHHHTTSSCEEEEEEEESCT-----T------CHHHHHHHHHTCCEEECCGGGSSSH
T ss_pred CEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEeCCC-----C------hHHHHHHHHcCCCEEEeCcccccch
Confidence 689999999862 23444454442211236666652111 0 0111222222322332222334444
Q ss_pred HHH-HHHHHHHHHcCCCEEEEecCcchHHHHHHH
Q 006961 175 EQV-NAALTACKNLNLDGLVIIGGVTSNTDAAYL 207 (623)
Q Consensus 175 e~~-~~i~~~l~~~~Id~LviIGGdgS~~~A~~L 207 (623)
+.+ +.+.+.+++++.|.+|+.| .+-.-....|
T Consensus 66 ~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l 98 (216)
T 2ywr_A 66 KEFEERMALELKKKGVELVVLAG-FMRILSHNFL 98 (216)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHH
T ss_pred hhhhHHHHHHHHhcCCCEEEEeC-chhhCCHHHH
Confidence 444 3567889999999766654 5543333333
No 138
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=23.32 E-value=2e+02 Score=28.08 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=27.5
Q ss_pred eecCHhHHhchhhcCCcccccCcCCCCCChHHHHHHHHHHHHcCCCEEEEecCcc
Q 006961 145 LEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 199 (623)
Q Consensus 145 ~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e~~~~i~~~l~~~~Id~LviIGGdg 199 (623)
.-+..+.++.+...||..++=. ..+++.. .+.+. ++|+||+-||.|
T Consensus 27 ~~~~~~~~~~l~~aG~~pv~lp----~~~~~~~---~~~l~--~~DGlil~GG~~ 72 (254)
T 3fij_A 27 TYTQQRYVDAIQKVGGFPIALP----IDDPSTA---VQAIS--LVDGLLLTGGQD 72 (254)
T ss_dssp ---CHHHHHHHHHHTCEEEEEC----CCCGGGH---HHHHH--TCSEEEECCCSC
T ss_pred hhhhHHHHHHHHHCCCEEEEEe----CCCchHH---HHHHh--hCCEEEECCCCC
Confidence 3467788999999999644321 1122212 22333 799999999965
No 139
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=23.25 E-value=1.1e+02 Score=31.81 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCC
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKC 216 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~ 216 (623)
..++.+++.|-+. .|.++||||-.|. |..+|+|-+++.|.
T Consensus 213 ~~RQ~av~~lA~~-vD~miVVGg~nSS-NT~rL~eia~~~g~ 252 (328)
T 3szu_A 213 TNRQEAVRALAEQ-AEVVLVVGSKNSS-NSNRLAELAQRMGK 252 (328)
T ss_dssp HHHHHHHHHHHHH-CSEEEEECCTTCH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh-CCEEEEeCCCCCc-hHHHHHHHHHHhCC
Confidence 5566666666664 9999999997764 34679998888773
No 140
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=22.75 E-value=5.5e+02 Score=25.15 Aligned_cols=30 Identities=10% Similarity=-0.198 Sum_probs=25.0
Q ss_pred ceEEEEEecCCCC-CchHHHHHHHHHHHHhc
Q 006961 94 AIRVGIVFCGRQS-PGGHNVVWGLYDALKLH 123 (623)
Q Consensus 94 ~~~IgIv~sGG~a-PG~nnVI~gl~~~l~~~ 123 (623)
..+||+++.+-.. |=...++.|+-+++++.
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~ 33 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL 33 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc
Confidence 4689999998777 88889999998888754
No 141
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=22.39 E-value=1e+02 Score=31.41 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=28.6
Q ss_pred HHhhccCceEEEEecCC-CccHHHHHhhhhcCCcEEEEC
Q 006961 259 DALSAEKYYYFIRLMGR-RASHVALECTLQSHPNMVILG 296 (623)
Q Consensus 259 da~S~~k~~~fVevMGR-~aG~LAL~~aLat~pniilIp 296 (623)
..+...+.+.||=+||- |.||++|--.-.. +|.++++
T Consensus 19 ~~~~~g~~Ig~VPTMGaLH~GHlsLv~~Ar~-~d~VVVS 56 (285)
T 3mxt_A 19 DWKSHQLSIGYVPTMGFLHDGHLSLVKHAKT-QDKVIVS 56 (285)
T ss_dssp HHHHTTCCEEEEEECSSCCHHHHHHHHHHTT-SSEEEEE
T ss_pred HHHHcCCeEEEEcCCCcccHHHHHHHHHHHh-CCEEEEE
Confidence 34455677999999996 8999998766666 8877764
No 142
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=22.35 E-value=1.1e+02 Score=29.55 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=62.6
Q ss_pred CCceEEEEEecCCCCCchH-HHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCC
Q 006961 92 HPAIRVGIVFCGRQSPGGH-NVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQ 170 (623)
Q Consensus 92 ~~~~~IgIv~sGG~aPG~n-nVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k 170 (623)
.+..+|||++..-.-|-.. .++.|+-+.+.+. +.++.-+. ..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~-- 53 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--GKTILIAN---------------------------------TG-- 53 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CT--
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--CCEEEEEe---------------------------------CC--
Confidence 4457899999887777777 8889998887643 33332111 00
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCC-CCCCCcChhh
Q 006961 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQ-FVETNVGFDT 244 (623)
Q Consensus 171 ~~t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~-~ie~S~GFdT 244 (623)
.+.+...+.++.+...++||+|+.+.+.+. ..+.+.+. +++||.+ |++.... .+ .++++|-
T Consensus 54 -~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~~--~iPvV~~----~~~~~~~~~~-~~V~~D~ 115 (301)
T 3miz_A 54 -GSSEREVEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGDV--SIPTVMI----NCRPQTRELL-PSIEPDD 115 (301)
T ss_dssp -TCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTTC--CCCEEEE----EEECSSTTSS-CEEEECH
T ss_pred -CChHHHHHHHHHHHhCCCCEEEEecCCccH-----HHHHHHhC--CCCEEEE----CCCCCCCCCC-CEEeeCh
Confidence 123444567888999999999999877543 11223233 4777765 3333322 11 4666663
No 143
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.30 E-value=2.5e+02 Score=27.51 Aligned_cols=93 Identities=12% Similarity=-0.036 Sum_probs=57.0
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHH-hchhhcCCcccccCcCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEIL-STYKNQGGYDMLGRTKDQI 171 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v-~~~~n~GG~~~lGS~R~k~ 171 (623)
...+|-+.+.+|+.=-+-.-+.+.. +. ..|++|+-.= ...+.+.+ +..... +.+++|-|-...
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~--L~--~~G~~Vi~LG-----------~~vp~e~l~~~~~~~-~~d~V~lS~l~~ 185 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTAL--LR--ANGYNVVDLG-----------RDVPAEEVLAAVQKE-KPIMLTGTALMT 185 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHH--HH--HTTCEEEEEE-----------EECCSHHHHHHHHHH-CCSEEEEECCCT
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHH--HH--HCCCEEEECC-----------CCCCHHHHHHHHHHc-CCCEEEEEeecc
Confidence 4568889999988754443333332 12 2366764211 12444433 333333 336776655443
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCcchH
Q 006961 172 RTTEQVNAALTACKNLNLDGLVIIGGVTSN 201 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id~LviIGGdgS~ 201 (623)
.+...+.+.++.|++.+.+.-|++||....
T Consensus 186 ~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~ 215 (258)
T 2i2x_B 186 TTMYAFKEVNDMLLENGIKIPFACGGGAVN 215 (258)
T ss_dssp TTTTHHHHHHHHHHTTTCCCCEEEESTTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEECccCC
Confidence 455678899999999999999999998764
No 144
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=21.97 E-value=1.7e+02 Score=31.52 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 173 TTEQVNAALTACKNL---NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 173 t~e~~~~i~~~l~~~---~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++. +...+||-.=.
T Consensus 149 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l--~~~KPVVlTGA 202 (435)
T 2d6f_A 149 KPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFML--RTPVPVVFTGA 202 (435)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHHHHHHHE--ECSSCEEEECC
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEcCcchHHHHHHHHHHHh--CCCCCEEEECC
Confidence 567777777766665 8999999999999987554444444 44567775433
No 145
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=21.81 E-value=74 Score=29.71 Aligned_cols=57 Identities=7% Similarity=0.120 Sum_probs=32.6
Q ss_pred cCCeeecCHhHHhchhh---cCCcccccCcCCCCCChHHHHHHHHHHHH-cCCCEEEEecCcc
Q 006961 141 AQKTLEVTKEILSTYKN---QGGYDMLGRTKDQIRTTEQVNAALTACKN-LNLDGLVIIGGVT 199 (623)
Q Consensus 141 ~~~~~eLt~~~v~~~~n---~GG~~~lGS~R~k~~t~e~~~~i~~~l~~-~~Id~LviIGGdg 199 (623)
.++..+-+...+..+.. .-|... .. ..-.++.+.+.++++.+.+ .+.|.+|+.||-|
T Consensus 19 ~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~-~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 19 KGIYEDISGKAIIDYLKDVIITPFEV-EY-RVIPDERDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp HTSSCCHHHHHHHHHHHHHBCSCCEE-EE-EEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCeecchHHHHHHHHHHHHhCCCEE-EE-EEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 34555555555555444 334334 22 2224556666666666554 3789999999864
No 146
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=21.64 E-value=1.1e+02 Score=27.36 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=45.6
Q ss_pred EEEEecCcchH---HHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHHHHHHHHHHHhhccCce
Q 006961 191 GLVIIGGVTSN---TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYY 267 (623)
Q Consensus 191 ~LviIGGdgS~---~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~~I~ni~~da~S~~k~~ 267 (623)
.++.+=|.+|. .-+..|++++.+++....|+ .| |+++. | .++.+.+...+... ...+
T Consensus 4 tIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~-~p-----dl~~~------g-~~~~~~l~~~~~~~-----~~~~-- 63 (202)
T 4fle_A 4 TLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQ-IP-----QLPPY------P-AEAAEMLESIVMDK-----AGQS-- 63 (202)
T ss_dssp EEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEE-CC-----CCCSS------H-HHHHHHHHHHHHHH-----TTSC--
T ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEE-Ee-----CCCCC------H-HHHHHHHHHHHHhc-----CCCc--
Confidence 35666664432 23677899998888777876 34 55432 2 23444444443332 1223
Q ss_pred EEEEecCCCcc-HHHHHhhhhcCCc
Q 006961 268 YFIRLMGRRAS-HVALECTLQSHPN 291 (623)
Q Consensus 268 ~fVevMGR~aG-~LAL~~aLat~pn 291 (623)
|=++|+|-| ++|+..|......
T Consensus 64 --i~l~G~SmGG~~a~~~a~~~~~~ 86 (202)
T 4fle_A 64 --IGIVGSSLGGYFATWLSQRFSIP 86 (202)
T ss_dssp --EEEEEETHHHHHHHHHHHHTTCC
T ss_pred --EEEEEEChhhHHHHHHHHHhccc
Confidence 236788875 7777777665543
No 147
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=21.51 E-value=4.1e+02 Score=25.03 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=61.3
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCC
Q 006961 93 PAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIR 172 (623)
Q Consensus 93 ~~~~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~ 172 (623)
+..+||+++..-..|-...++.|+-+.++.. +.++. +.... .
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 47 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI---------------------------------LGNAW---N 47 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCeEE---------------------------------EEcCC---C
Confidence 3468999998777788888888888877642 22211 00000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhh
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDT 244 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdT 244 (623)
+.+.....++.+...++|++|+.+.+.+.... +.+.+. .+++||.+ |.+.+......++++|-
T Consensus 48 ~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~----~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~d~ 110 (289)
T 1dbq_A 48 NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLL----AMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNA 110 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSCCCHHHH----HHHHHT-TTSCEEEE----ECSSCCSSSCEEEEECH
T ss_pred ChHHHHHHHHHHHhCCCCEEEEEeccCCHHHH----HHHHhc-cCCCEEEE----ccCCCccCcCCEEEeCc
Confidence 23445567788888999999999987653222 233321 24788765 34333222113666663
No 148
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=21.39 E-value=1.2e+02 Score=31.28 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 173 TTEQVNAALTACKNL----NLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 173 t~e~~~~i~~~l~~~----~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+ ...+||-.
T Consensus 63 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 115 (331)
T 1agx_A 63 TDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVH--TDKPIVLV 115 (331)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCcchHHHHHHHHHHHcC--CCCCEEEe
Confidence 567777777776665 79999999999999875544445443 44577755
No 149
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.24 E-value=80 Score=29.70 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecC-cchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChhhHHHHHHH
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGG-VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 251 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGG-dgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFdTA~~~~s~ 251 (623)
+++.+.+..++.++.+++.+|.+.| .+.+-+ .++- ....+|||||-... ++. |.|
T Consensus 43 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~~~~-~l~--------G~d-------- 98 (163)
T 3ors_A 43 TPKMMVQFASEARERGINIIIAGAGGAAHLPG--MVAS-----LTTLPVIGVPIETK-SLK--------GID-------- 98 (163)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--HHHH-----HCSSCEEEEEECCT-TTT--------THH--------
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--HHHh-----ccCCCEEEeeCCCC-CCC--------CHH--------
Confidence 5778888888888889996655543 333333 2332 23589999995432 232 333
Q ss_pred HHHHHHHHHhhccCce--EEEEec---CCCccHHHHHh
Q 006961 252 LISNVCTDALSAEKYY--YFIRLM---GRRASHVALEC 284 (623)
Q Consensus 252 ~I~ni~~da~S~~k~~--~fVevM---GR~aG~LAL~~ 284 (623)
.+..-.. ++..+ ..|=+- |.+|+.+|...
T Consensus 99 ---sLlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 99 ---SLLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp ---HHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred ---HHHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHH
Confidence 3333333 55554 444442 67788877654
No 150
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=21.04 E-value=79 Score=29.90 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc-chHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGV-TSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGd-gS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+++.+.+.+++.++.+++.+|.+.|- +.+-+ .++- ....+|||||-.
T Consensus 46 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 46 TPKETVEFVENADNRGCAVFIAAAGLAAHLAG--TIAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEECSSCCHHH--HHHH-----TCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--HHHh-----cCCCCEEEeecC
Confidence 67788888899999999966655443 33322 2332 346899999953
No 151
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.93 E-value=2e+02 Score=22.58 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHcCCC---------EEEEecCcchHHHHHHHHHHHHhcCCC
Q 006961 172 RTTEQVNAALTACKNLNLD---------GLVIIGGVTSNTDAAYLAETFAEAKCP 217 (623)
Q Consensus 172 ~t~e~~~~i~~~l~~~~Id---------~LviIGGdgS~~~A~~Lae~~~~~g~~ 217 (623)
.++++-++..+.|++.+++ +-|.+|...+-..|..+.+.+++.|++
T Consensus 18 ~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 18 KVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 4567777888888888877 457788888888999888888887864
No 152
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=20.89 E-value=3.6e+02 Score=25.25 Aligned_cols=25 Identities=4% Similarity=-0.045 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCcc
Q 006961 175 EQVNAALTACKNLNLDGLVIIGGVT 199 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id~LviIGGdg 199 (623)
+.-..+.+.|.+++-.-+.+|+|..
T Consensus 108 ~~g~~a~~~L~~~G~~~i~~i~~~~ 132 (277)
T 3e61_A 108 KGGQLQAEVVRKGKGKNVLIVHENL 132 (277)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCT
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCC
Confidence 3445555666666666666665543
No 153
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=20.74 E-value=83 Score=27.08 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCCChh
Q 006961 311 KQICDAVQARAEQDKNHGVILLPEGLIESIPE 342 (623)
Q Consensus 311 ~~I~~~I~~R~~~gk~~gVIvVsEGl~~~ipe 342 (623)
+++.+.+++ +.+.++||||+|.|.+.+.+++
T Consensus 39 ee~~~~~~~-l~~~~digIIlIte~ia~~i~~ 69 (102)
T 2i4r_A 39 EEIVKAVED-VLKRDDVGVVIMKQEYLKKLPP 69 (102)
T ss_dssp HHHHHHHHH-HHHCSSEEEEEEEGGGSTTSCH
T ss_pred HHHHHHHHH-HhhCCCeEEEEEeHHHHHHHHH
Confidence 445555554 3346899999999999988874
No 154
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=20.50 E-value=92 Score=29.15 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCCCCC--hHHHHHHHHHHHHc-C----CCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCc
Q 006961 168 KDQIRT--TEQVNAALTACKNL-N----LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV 240 (623)
Q Consensus 168 R~k~~t--~e~~~~i~~~l~~~-~----Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~ 240 (623)
|+++++ .+++....+.+.+. . =|-++|=||-|=...|...-+ +.|..++|||+-|- ...+..+.-...+
T Consensus 52 rf~I~~~g~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~---elg~~i~v~glAK~-~e~l~~~~~~i~L 127 (159)
T 2nrr_A 52 RYKIEQDHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALK---EIGKDCPVVGLAKK-EETVVFENREIHL 127 (159)
T ss_dssp EEEC-----CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHH---HTTCCCCEEEEC-----CEEETTEEECC
T ss_pred eeecCCCCCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHH---HcCCCccEEEEEcC-CcEEEeCCCeeec
Confidence 345554 36788888887765 2 366666688888877776544 45788999999993 1112111101222
Q ss_pred Chhh-HHHHHHHHHHHHHHHHhhccC
Q 006961 241 GFDT-ICKVNSQLISNVCTDALSAEK 265 (623)
Q Consensus 241 GFdT-A~~~~s~~I~ni~~da~S~~k 265 (623)
--++ +....+++=+..++=|.+.++
T Consensus 128 ~~~s~~l~llqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 128 PHDHPVLRLLVQIRDETHRFAVSYHR 153 (159)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233 567777777777777776554
No 155
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.49 E-value=2.3e+02 Score=28.48 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCC-----EEEEecCc--chHHHHHHHHHHHHhcCCCCeEEEee
Q 006961 175 EQVNAALTACKNLNLD-----GLVIIGGV--TSNTDAAYLAETFAEAKCPTKVVGVP 224 (623)
Q Consensus 175 e~~~~i~~~l~~~~Id-----~LviIGGd--gS~~~A~~Lae~~~~~g~~i~VIGVP 224 (623)
..++.+.+.++...-. -++++||+ ++-.....|++.++++|+.+.|||+=
T Consensus 89 ~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 89 TALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 4677788888754332 35566765 35566788899999999989999885
No 156
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=20.42 E-value=1.3e+02 Score=28.42 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc-chHHHHHHHHHHHHhcCCCCeEEEeee
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGGV-TSNTDAAYLAETFAEAKCPTKVVGVPV 225 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGGd-gS~~~A~~Lae~~~~~g~~i~VIGVPK 225 (623)
+++.+.+.+++.++.+++.+|.+.|- +.+-+ .++- ....+|||||-
T Consensus 45 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~ 91 (166)
T 3oow_A 45 TPDKMFDYAETAKERGLKVIIAGAGGAAHLPG--MVAA-----KTTLPVLGVPV 91 (166)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--HHHH-----TCSSCEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCcchhhHH--HHHh-----ccCCCEEEeec
Confidence 67788888888888889877766443 33333 2332 34689999994
No 157
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=20.39 E-value=3.2e+02 Score=26.76 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=51.5
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhcCCCCEEEEEccChhhhhcCCeeecCHhHHhchhhcCCcccccCcCCCCCChH
Q 006961 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE 175 (623)
Q Consensus 96 ~IgIv~sGG~aPG~nnVI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GG~~~lGS~R~k~~t~e 175 (623)
.|||.=|| -|+-+|.+.+.+. .|+..++-|-+-- .-.|.+-+++.+. +
T Consensus 5 ~IgvfDSG---vGGltv~~~i~~~----lP~~~~iy~~D~~----~~Pyg~~s~~~i~---------------------~ 52 (267)
T 2gzm_A 5 AIGVIDSG---VGGLTVAKELIRQ----LPKERIIYLGDTA----RCPYGPRSREEVR---------------------Q 52 (267)
T ss_dssp CEEEEESS---STTHHHHHHHHHH----CTTSCEEEEECTT----TCCCTTSCHHHHH---------------------H
T ss_pred cEEEEeCC---ccHHHHHHHHHHH----CCCCCEEEecCCC----CCCCCCCCHHHHH---------------------H
Confidence 69999998 6777888888754 4555444333210 0001111222211 2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEe
Q 006961 176 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGV 223 (623)
Q Consensus 176 ~~~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGV 223 (623)
...++++.+.+.+.|++|+-....|......|.+ .++++||||
T Consensus 53 ~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~-----~~~iPvigi 95 (267)
T 2gzm_A 53 FTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQK-----QLPIPVVGV 95 (267)
T ss_dssp HHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHH-----HCSSCEEES
T ss_pred HHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHH-----hCCCCEEee
Confidence 2456678888899999887655444223333333 236899996
No 158
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=20.38 E-value=67 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCCeEEEeeecccCCC
Q 006961 204 AAYLAETFAEAKCPTKVVGVPVTLNGDL 231 (623)
Q Consensus 204 A~~Lae~~~~~g~~i~VIGVPKTIDNDl 231 (623)
...|.+.+.+.+...-|||.|++.||..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 69 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTE 69 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCB
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCc
Confidence 4556666666677889999999999854
No 159
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.35 E-value=95 Score=31.21 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcChh
Q 006961 178 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFD 243 (623)
Q Consensus 178 ~~i~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~~~ie~S~GFd 243 (623)
.+.++.+...++||+|+.+-..+..... .+.+.+ ++||.+ |.+.....+ .++++|
T Consensus 118 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~----~l~~~~--iPvV~i----~~~~~~~~~-~~V~~D 172 (366)
T 3h5t_A 118 VSAQQLVNNAAVDGVVIYSVAKGDPHID----AIRARG--LPAVIA----DQPAREEGM-PFIAPN 172 (366)
T ss_dssp HHHHHHHHTCCCSCEEEESCCTTCHHHH----HHHHHT--CCEEEE----SSCCSCTTC-CEEEEC
T ss_pred HHHHHHHHhCCCCEEEEecCCCChHHHH----HHHHCC--CCEEEE----CCccCCCCC-CEEEeC
Confidence 4568889999999999998754433222 333344 678754 555433322 456665
No 160
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=20.27 E-value=77 Score=30.12 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecC-cchHHHHHHHHHHHHhcCCCCeEEEeeec
Q 006961 173 TTEQVNAALTACKNLNLDGLVIIGG-VTSNTDAAYLAETFAEAKCPTKVVGVPVT 226 (623)
Q Consensus 173 t~e~~~~i~~~l~~~~Id~LviIGG-dgS~~~A~~Lae~~~~~g~~i~VIGVPKT 226 (623)
+++.+.+.+++.++.+++.+|.+.| .+.+-+ .++- ....+|||||-.
T Consensus 52 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 52 TPDRLFSFAEQAEANGLHVIIAGNGGAAHLPG--MLAA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CHHHHHHHHHHTTTTTCSEEEEEEESSCCHHH--HHHH-----TCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--HHHh-----ccCCCEEEeeCC
Confidence 5778888888888899996655543 333333 2332 346899999954
Done!