RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006961
(623 letters)
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 1263 bits (3269), Expect = 0.0
Identities = 517/589 (87%), Positives = 556/589 (94%), Gaps = 2/589 (0%)
Query: 37 MQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIR 96
+QGTTVRVE GD+TT ADPAD H+ISR+FPHTYGQPLAHFLRATAKVPDAQ+ITEHPA+R
Sbjct: 22 LQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVR 81
Query: 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYK 156
VG+VFCGRQSPGGHNV+WGL+DALK HNP S LLGFLGG+EGLFAQKTLE+T ++LSTYK
Sbjct: 82 VGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYK 141
Query: 157 NQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKC 216
NQGGYD+LGRTKDQIRTTEQVNAAL AC+ L LDGLVIIGGVTSNTDAA LAETFAEAKC
Sbjct: 142 NQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKC 201
Query: 217 PTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRR 276
TKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGR+
Sbjct: 202 KTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRK 261
Query: 277 ASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 336
ASHVALEC LQSHPNMVILGEEVAASKLTLFD+TKQICDAVQARAEQDKNHGVIL+PEGL
Sbjct: 262 ASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGL 321
Query: 337 IESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSA 396
IESIPEVYALL+EIH LL+QGV VDNISSQLSPWASALFEFLPPFIKKQLLL PESDDSA
Sbjct: 322 IESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSA 381
Query: 397 QLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVL 456
QLSQIETEKLLA LVE EMNKR KEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVL
Sbjct: 382 QLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVL 441
Query: 457 GHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAIN 516
GHICYHILAAGLNGYMATVTNLK+P NKWRCGAAPIT+MM+VKRWS+ PGAS IG+PAI+
Sbjct: 442 GHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMMSVKRWSRGPGASQIGKPAIH 501
Query: 517 PATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKE 576
PA VD++GKAYELLRQNA+ FL+DDLYRNPGP+QFDGPGADAK +TLCVED+DYMGRIK+
Sbjct: 502 PAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGADAKPITLCVEDQDYMGRIKK 561
Query: 577 LQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASG--GQTTL 623
LQ+YLD+VRTIVKPGCSQEVLKAALS MASVT+VL+ MS+ G T L
Sbjct: 562 LQEYLDKVRTIVKPGCSQEVLKAALSSMASVTDVLTVMSSPSNRGLTPL 610
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 849 bits (2195), Expect = 0.0
Identities = 274/537 (51%), Positives = 356/537 (66%), Gaps = 19/537 (3%)
Query: 37 MQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIR 96
+QG T + D TA AD + FP+TYG P+ F A EH ++
Sbjct: 16 LQGDTANISLEDGEPTAAVADQEELKELFPNTYGLPIITFEPGEASP------DEHQPLK 69
Query: 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYK 156
+G++ G Q+PGGHNV+ GL+DALK NP S L GF+GG GL +E+TKE++ TY+
Sbjct: 70 IGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYR 129
Query: 157 NQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKC 216
N GG+D++G + +I T EQ ALT K L LDGLVIIGG SNT+AA LAE FA+
Sbjct: 130 NTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGL 189
Query: 217 PTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRR 276
T+V+GVP T++GDLKNQF+ET+ GFDT CK+ S+LI N+C DALSA+KY++FIRLMGR
Sbjct: 190 KTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKYWHFIRLMGRS 249
Query: 277 ASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 336
ASH+ALEC LQ+HPN+ I+GEEVAA K+TL LT I D + RA + KN GVIL+PEGL
Sbjct: 250 ASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGL 309
Query: 337 IESIPEVYALLKEIHSLLRQGVPV----DNISSQLSPWASALFEFLPPFIKKQLLLQPES 392
IE IPEV AL+KE+++LL Q V DN+ S+LSP + ALFE LP FI+ QLLL +
Sbjct: 310 IEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDP 369
Query: 393 DDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDY 452
+ Q+SQIETEKLL LV+ E+NKR KEG YKG KF+A+ HFFGY+ R + PS FD DY
Sbjct: 370 HGNVQVSQIETEKLLIELVQTELNKRKKEGEYKG-KFSAVSHFFGYEGRCAFPSNFDSDY 428
Query: 453 AYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGR 512
Y LG+ +LA GL GYM+T+ NL NPA +W G P+T MM ++R +
Sbjct: 429 CYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNMERRHGE------MK 482
Query: 513 PAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPG--ADAKAVTLCVED 567
P I A VD+ GK ++ N ++ L+DLY PGP+Q+ GP D +TL +E
Sbjct: 483 PVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEVCDQPTLTLLLEQ 539
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 593 bits (1532), Expect = 0.0
Identities = 238/523 (45%), Positives = 332/523 (63%), Gaps = 29/523 (5%)
Query: 44 VEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCG 103
++ D T AD ++ FP+TYG P F++ + ++VG++ G
Sbjct: 28 IKIVDGEFTESVADQDELAELFPNTYGLPYVTFVKGSESS--------SKPLKVGVILSG 79
Query: 104 RQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDM 163
Q+PGGHNV+ GL+D LK NP S L GF+GG GL K +E+T+E++ Y+N GG+DM
Sbjct: 80 GQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDM 139
Query: 164 L--GRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVV 221
+ GRTK I T EQ A L K L LDGLVIIGG SNT+AA LAE FA+ C T+V+
Sbjct: 140 IGSGRTK--IETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVI 197
Query: 222 GVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVA 281
GVP T++GDLKN+F+ET+ GFDT K S++I N+ DALSA+KY++FI+LMGR ASH+A
Sbjct: 198 GVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSASHIA 257
Query: 282 LECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIP 341
LEC LQ+HPN+ ++ EEVA K++L D+ I + RA + KN+GVIL+PEGLIE IP
Sbjct: 258 LECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIP 317
Query: 342 EVYALLKEIHSLLRQ------GVPVDN----ISSQLSPWASALFEFLPPFIKKQLLLQPE 391
E+ +L+KE++SLL + G+ + I S+LSP ++ LF+ LP I +QLLL +
Sbjct: 318 EMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRD 377
Query: 392 SDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCD 451
+ Q+S+IETEKLL +V+ E+ K EG YKG F+AI HFFGY+ R + PS FD D
Sbjct: 378 PHGNVQVSKIETEKLLIEMVKKELEKLKPEGKYKG-PFSAISHFFGYEGRSAFPSNFDAD 436
Query: 452 YAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIG 511
Y Y LG+ ++ G GYM+T+ NL +P +W GA P+T MM ++R
Sbjct: 437 YCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPLTMMMNMER------RHGKE 490
Query: 512 RPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGP 554
+P I A VD+ G ++ + + L+D YR PGP+Q+ GP
Sbjct: 491 KPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGP 533
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 477 bits (1230), Expect = e-163
Identities = 216/538 (40%), Positives = 310/538 (57%), Gaps = 28/538 (5%)
Query: 42 VRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVF 101
+++ G +T+ A D ++++ FP TYGQP F VPD + P +++GIV
Sbjct: 28 IKIVEGPATSAA--GDPDALAKLFPGTYGQPSVAF------VPDQDAPSSAPKLKIGIVL 79
Query: 102 CGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGY 161
G Q+PGGHNV+ GL+D LK STL GF GG G+ +E+ E + Y+N GG+
Sbjct: 80 SGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGF 139
Query: 162 DMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVV 221
DM+ + +I T +Q A K L+LD LV+IGG SNT+AA LAE F T+V+
Sbjct: 140 DMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVI 199
Query: 222 GVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVA 281
GVP T++GDLKN+ +ET+ GFDT K+ S+LI NV DA S KY++F++LMGR ASH+A
Sbjct: 200 GVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSASHIA 259
Query: 282 LECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIP 341
LEC L++HPN+ I+ EEV+A K TL ++T + D + RAE N GV+L+PEGLIE IP
Sbjct: 260 LECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIP 319
Query: 342 EVYALLKEIHSLLRQGVPVDN-----------ISSQLSPWASALFEFLPPFIKKQLLLQP 390
EV L+ E++ +L V N + I++QL+L+
Sbjct: 320 EVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLER 379
Query: 391 ESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDC 450
+ + Q+S+IETEKLL +VE + K + G YKG +F HFFGY+ R + PS FD
Sbjct: 380 DPHGNVQVSRIETEKLLIQMVETRLEKMKQAGAYKG-QFMGQSHFFGYEGRCAFPSNFDA 438
Query: 451 DYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSI 510
DY Y LG+ +L +G GY+++V NL P +W G P+T +M ++R
Sbjct: 439 DYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPLTMLMNMERRHGKF----- 493
Query: 511 GRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGP--GADAKAVTLCVE 566
+P I A VD+ G ++ + L + Y PGPVQ+ GP G+D + TL +E
Sbjct: 494 -KPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGPSEGSDELSHTLLLE 550
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 473 bits (1218), Expect = e-161
Identities = 225/530 (42%), Positives = 322/530 (60%), Gaps = 24/530 (4%)
Query: 43 RVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFC 102
++ G ++ A + I++ FP+ +GQP + + A +++G+V
Sbjct: 52 KIVDGPPSSAAGNPE--EIAKLFPNLFGQPSVMLVPSQADALS-----SDQKLKIGVVLS 104
Query: 103 GRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYD 162
G Q+PGGHNV+ G++D L+ H S L GF GG G+ K +E+T E + Y+NQGG+D
Sbjct: 105 GGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFD 164
Query: 163 MLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVG 222
M+ +D+I T EQ A L+LDGLV+IGG SNT+A LAE F T+V+G
Sbjct: 165 MICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIG 224
Query: 223 VPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVAL 282
P T++GDLK++ V T+ GFDT CK+ S++I NV DA S KYY+F+RLMGR ASH+ L
Sbjct: 225 CPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLMGRAASHITL 284
Query: 283 ECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPE 342
EC LQ+HPN+ I+GEEVAA KLTL ++T I D + RAE N+GVIL+PEGLI+ IPE
Sbjct: 285 ECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIPE 344
Query: 343 VYALLKEIHSLLRQGVPVDN---ISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLS 399
V L+ E++ +L V VD +L P + LF+FLP I++QL+L+ + + Q++
Sbjct: 345 VQHLIAELNEILAHDV-VDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVA 403
Query: 400 QIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHI 459
+IETEK+L +VE E+ KR +EG+YKG F HFFGY+ R LP+ FD Y Y LG+
Sbjct: 404 KIETEKMLIQMVETELEKRKQEGSYKG-HFKGQSHFFGYEGRCGLPTNFDATYCYALGYG 462
Query: 460 CYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPAT 519
+L +G G +++V NL P +W G +TS+M V+R +P I A
Sbjct: 463 AGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMDVER------RHGKFKPVIKKAM 516
Query: 520 VDMRG---KAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVE 566
V++ G K + LR + L + Y +PGP+QF GPG+DA TL +E
Sbjct: 517 VELEGAPFKKFASLRD---EWALKNRYISPGPIQFSGPGSDATNHTLKLE 563
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 401 bits (1031), Expect = e-125
Identities = 198/534 (37%), Positives = 296/534 (55%), Gaps = 27/534 (5%)
Query: 61 ISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDAL 120
+S FP T G L F A + + + PA R+G+V G Q+ GGHNV+ GL +
Sbjct: 72 VSSYFPLTSGNSLVKF-EAISDGSSSW--KKFPARRIGVVLSGGQASGGHNVIAGLMSYI 128
Query: 121 KLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAA 180
KL N S L GFLGG EG+++++ E+T++ ++ NQGG++++ + +I T EQ+ A+
Sbjct: 129 KLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRAS 188
Query: 181 LTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV 240
L C+ L L GLV+IGG SNT+AA LAE F T VVG P T++GDLKN+ +ET+
Sbjct: 189 LEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSF 248
Query: 241 GFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVA 300
G+DT K S+ I ++ + YYF+RLMGR ASH+ LEC LQ+ NM+++GEE+
Sbjct: 249 GYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIK 308
Query: 301 ASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV 360
+L + +I + + R K HG++LLPEGLIE IPE L+KE++ +L +
Sbjct: 309 EENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEFIPEFETLIKELNLILLKTNDR 368
Query: 361 DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLK 420
I LS LF LP ++ QLLL+ + + Q+++I TE+LL H+ + ++ + K
Sbjct: 369 KQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVKK 428
Query: 421 EGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKN 480
+ N H+FGY+ R +LPS FD Y + LGH ++ +GYMA V L
Sbjct: 429 DYILD----NVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSL 484
Query: 481 PANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLD 540
+W P+T MM ++ G S P I VD++G++Y Q + + L+
Sbjct: 485 TPEQWEPAGCPLTYMMNIE---LRKGKSV---PVIKKYLVDLKGQSYLAYCQVRSEWKLN 538
Query: 541 DLYRNPGPVQFDGPGADAKAVTLC---------VEDRD-----YMGRIKELQKY 580
D YRNPGP+QFDGP + + +EDRD + EL +
Sbjct: 539 DYYRNPGPIQFDGPNSGITNYMISPPRVEDLLRMEDRDENKMTHKLCGSELSQN 592
Score = 219 bits (558), Expect = 1e-60
Identities = 153/604 (25%), Positives = 265/604 (43%), Gaps = 91/604 (15%)
Query: 98 GIVFCGRQSPGGHNVVWGLYDALKLHNPK---STLLGFLGGSEGLFAQKTLEVTKEILST 154
G++ +PG NV+ GL + L +L F G + L T E + E
Sbjct: 679 GLILSCLSTPGTQNVICGLVNGLPSLKQLIVFKSLSDFYEG-KALKVDLTSEGSLEFFEN 737
Query: 155 YKNQGGYDMLGRTKDQIRTTEQVNAALT----------------ACKNL----------- 187
N GG + ++ +E+ + T +CK L
Sbjct: 738 SLNSGGCIFPNGVEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLS 797
Query: 188 --NLDGLVIIGGVTSNTDAAYLAE-----TFAEAKCPTKVVGVPVTLNGDLKNQFVETNV 240
N+ + I+G + T A L+E + K VV VPV L + +Q +ET +
Sbjct: 798 FFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCI 857
Query: 241 GFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVA 300
GFD++ K S L+ N+ TD+ SA KY+YF++++G + S+VALE +Q+HPN+V++ E A
Sbjct: 858 GFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQTHPNLVVIPERYA 917
Query: 301 ASKL----------TLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 350
SKL TL D+ +ICD + R+ Q N G +L+ EGL + +VY +E
Sbjct: 918 DSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFD---QVYP-TREY 973
Query: 351 HSLLRQGVPVDNI------------SSQLSPWASALFE-FLPPFIKKQLLLQPESDDSAQ 397
+ + + S LS + + E F F L +S +
Sbjct: 974 RKIFSRFSTQNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRK 1033
Query: 398 LSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLG 457
+ + TE +L+ LV+ E+ R + K N +C F Q R +PS FD + G
Sbjct: 1034 ICDVRTEIILSALVQKELKFRRSKNKIKN-GMNPVCFSFTDQVRACIPSDFDSTLGLMYG 1092
Query: 458 HICYHILAAGL-NGYMATVTNLKNPANKWRCGAAPITSMMT-------VKRWSQNPGASS 509
+ I+ + L GY+ + + + + W A PI+S+MT + N S
Sbjct: 1093 MLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTLNIEGDKIMDSRNNSNLSF 1152
Query: 510 IGRPAINPAT----------------VDMR-GKAYELLRQNATRFLLDDLYRNPGPVQFD 552
+ + +T V+MR +++LL + ++ +D+ Y NPGP+Q+
Sbjct: 1153 ESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQYF 1212
Query: 553 GPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLS 612
+ TL + Y +KE+ + L E++T+ + G +++L + + + ++ +S
Sbjct: 1213 NLFKNLFNRTLFESEYVYTRNLKEMDQILLEIKTLCQLGVEKDILNSTIQHLKAIQNSIS 1272
Query: 613 AMSA 616
MS+
Sbjct: 1273 IMSS 1276
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 365 bits (939), Expect = e-112
Identities = 178/477 (37%), Positives = 293/477 (61%), Gaps = 13/477 (2%)
Query: 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILST 154
+++GI+ G +PGGHNV+ G+YD K +N +S ++GFLGG +GL+++ + +T +++
Sbjct: 178 LKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNR 237
Query: 155 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 214
++N GG++ML + ++R + + A L L+GLVIIGG SN++AA ++E FAE
Sbjct: 238 FRNLGGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAER 297
Query: 215 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274
+ P ++G+P T++GDLK++ +E + GFDT K S++I N+CTD + Y+ +R+MG
Sbjct: 298 QIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMG 357
Query: 275 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334
R ASHV LEC LQ+ PN+V++GEEV L+L D+ I + + R +KN+GVIL+PE
Sbjct: 358 RSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVILIPE 417
Query: 335 GLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDD 394
GLIE +PE+ L+ E++ +L++G P D + S +++FLP I+ QLL+ ES
Sbjct: 418 GLIEFVPEMKILIGELNVILKEG-PFDASKLKHS---REVWDFLPSIIRDQLLMDRESTG 473
Query: 395 SAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAY 454
Q+ +I TE+L+ LVE E+ K L + + H+ GY+ R ++PS FDC+Y Y
Sbjct: 474 YIQVGKIATERLIIVLVESELAK-LND---NNLNIQFMAHYLGYEGRCAIPSNFDCNYCY 529
Query: 455 VLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPA 514
LG+ ++ GYM+ + NL++ W A P +M V R N G PA
Sbjct: 530 ALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMHVNR--DNTGKEF---PA 584
Query: 515 INPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYM 571
+ VD+ + +L++ + + L DLYR+PGP+QF+G ++++ T+ + +D +
Sbjct: 585 VKRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNGHLSNSRCYTVKIPTKDNL 641
Score = 345 bits (887), Expect = e-104
Identities = 217/605 (35%), Positives = 320/605 (52%), Gaps = 65/605 (10%)
Query: 43 RVEFGDSTTTADPADTHSISRSFPH-TYG-----QPLAHFLRATAKVPDAQIITEHPAIR 96
+V G + DP I ++PH +Y Q + H AT I E I+
Sbjct: 788 KVRAGKQYISNDPYTQKQILSNYPHMSYENKFQIQEIFHDKYATP------ISFE---IK 838
Query: 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYK 156
+GIVF RQ+PG NV+ GLY LKL K + F G GL K + + + ++ +
Sbjct: 839 IGIVFLSRQAPGAMNVLCGLYRRLKLL--KGVCIAFYG-LYGLLNNKYIIIDDDNIAKHV 895
Query: 157 NQGGYDMLGRTKDQ-IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 215
NQGG ++ G + + + E N NL L+GLV+ G + T+AA LAE F E K
Sbjct: 896 NQGGLELTGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKK 955
Query: 216 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGR 275
PT VVG+P+T + +L ++ +ET VGFD+ KV + LI NV TDA+S KY++FIRLMGR
Sbjct: 956 IPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGR 1015
Query: 276 RASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 335
SH LEC LQ+HPNMVI+ EE A+ TL+ + + I D V ARAE KN+G +L+P+
Sbjct: 1016 SPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVLIPDA 1075
Query: 336 LIESIPEVYALLKEIHSLL----RQGVPVD------NIS--------------------- 364
L+ +P + LL EI +L +G V+ N+S
Sbjct: 1076 LLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPL 1135
Query: 365 ------SQLSPWASALFEFLPPFIKKQLLLQPESD-DSAQLSQIETEKLLAHLVEVEMNK 417
S+L+PW+ AL + P FI K+LL D S + ++ETE+LL +V+ E+++
Sbjct: 1136 SASPWVSKLTPWSLALLKTFPQFIIKELL---HVDLRSMRFEKLETEQLLLQMVKEELHQ 1192
Query: 418 RLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 477
R ++G Y G F + HFFGYQ R SLPS+FDC AY GH ++ +GL GY+ ++
Sbjct: 1193 RKQKGKYSG-SFMGLTHFFGYQGRSSLPSEFDCKLAYSYGHAASIVIESGLTGYIVSIRG 1251
Query: 478 LKNPANKWRCGAAPITSMMTVKRWSQNP----GASSIGRPAINPATVDMRGKAYELLRQN 533
L W+ A P S+M + Q AS P I A VD+ GKAY L+
Sbjct: 1252 LCGNIKDWKLFAIPFISLMKILPRGQGSKYLKSASKGDLPVIPSAPVDLNGKAYRSLKIA 1311
Query: 534 ATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCS 593
++ ++D + NPGP+QF+G ++ L E +Y ++ ++ Y + ++ + G S
Sbjct: 1312 LQKWQMEDRFCNPGPIQFEGNASNYYNRILFEEQSEYFEMLRYVECYANILKDTCRFGVS 1371
Query: 594 QEVLK 598
+ LK
Sbjct: 1372 ADYLK 1376
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 207 bits (528), Expect = 2e-61
Identities = 95/406 (23%), Positives = 160/406 (39%), Gaps = 86/406 (21%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 155
++G++ G +PG + + G+ + + G G GL E+ E +S
Sbjct: 2 KIGVLTSGGDAPGMNAAIRGVVRSAIAEG--LEVYGIYEGYAGLVEGDIKELDWESVSDI 59
Query: 156 KNQGGYDMLGRTKDQI-RTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 214
N+GG ++G + + RT E A K +D LV+IGG S T A L E +
Sbjct: 60 INRGGT-IIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSK 118
Query: 215 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274
V+G+P T++ D+K + +GFDT K + I + A S + + + +MG
Sbjct: 119 YQGFNVIGLPGTIDNDIKG--TDYTIGFDTALKTIVEAIDRIRDTASS-HQRTFVVEVMG 175
Query: 275 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334
R +ALE L + +++ + EE AA + +++ D ++ R E+ K HG+++
Sbjct: 176 RHCGDIALEAGLATGADIIFIPEEPAAD-----EWEEEMVDVIKKRRERGKRHGIVI--- 227
Query: 335 GLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDD 394
+ E +F+P
Sbjct: 228 -----VAE------------------------------GAIDFIP--------------- 237
Query: 395 SAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAY 454
+ TEKLLA LVE +RL F+ G+ RG P+ FD A
Sbjct: 238 -----KPITEKLLAKLVE----ERLG--------FDTRATVLGHVQRGGTPTAFDRILAS 280
Query: 455 VLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKR 500
LG +L G G + NL N+ + P+T + + +
Sbjct: 281 RLGAEAVELLLEGTGGTPVGIQNL----NENQVVRHPLTEAVNMTK 322
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 202 bits (515), Expect = 2e-59
Identities = 94/410 (22%), Positives = 152/410 (37%), Gaps = 84/410 (20%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 155
++ I+ G +PG + V+ + + G G GL +T+E +
Sbjct: 4 KIAILTSGGDAPGMNAVIRAVVRTAIKEG--LEVFGIYNGYLGLLEGDIKPLTREDVDDL 61
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 215
N+GG + + +T E A K L +D LV+IGG S T AA LAE
Sbjct: 62 INRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG---- 117
Query: 216 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGR 275
VVGVP T++ D+ + +GFDT + + I N+ D S+ + + + +MGR
Sbjct: 118 -GIPVVGVPKTIDNDIS--GTDFTIGFDTALETAVEAIDNLR-DTASSHERIFIVEVMGR 173
Query: 276 RASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 335
A +AL L + +++++ EE A L + +L +I +AR K H +I++ EG
Sbjct: 174 HAGWLALAAGLATGADIILIPEEPA--DLIIEELIAEIKAKREARG---KKHAIIVVAEG 228
Query: 336 LIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDS 395
I+ I ++
Sbjct: 229 AIDQIG----------------------------------------------------EN 236
Query: 396 AQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYV 455
E+LLA F G+ RG PS FD A
Sbjct: 237 GAELLAAIEELLAL-----------------GDFETRVTVLGHIQRGGTPSAFDRVLASR 279
Query: 456 LGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNP 505
LG +L G GYM + N K AP+ +M+++ ++
Sbjct: 280 LGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAPLKMVMSLEEPDRSI 329
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 70.8 bits (174), Expect = 2e-13
Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 20/243 (8%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 155
++GI+ G +PG + + + H + + G G +GL K + + +S
Sbjct: 1 KIGILTSGGDAPGMNAAIRAVVRTAIYHGFE--VYGIRRGYKGLINGKIEPLESKNVSGI 58
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 215
++GG + + +T E A+ K L ++GLV+IGG S T A L E
Sbjct: 59 IHRGGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGG--- 115
Query: 216 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGR 275
V+G+P T++ D+ + +GFDT + + A S E+ + I +MGR
Sbjct: 116 --IPVIGLPGTIDNDI--PGTDYTIGFDTALNTIIDAVDKIRDTATSHER-AFVIEVMGR 170
Query: 276 RASHVALECTLQSHPNMVILGEEVAASKLTLFDLT-KQICDAVQARAEQDKNHGVILLPE 334
A +AL + + ++I+ E FD ++ ++ + E K H +I++ E
Sbjct: 171 HAGDLALYAGIATGAEIIIIPE---------FDYDIDELIQRLKEQHEAGKKHSIIIVAE 221
Query: 335 GLI 337
G I
Sbjct: 222 GNI 224
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 68.9 bits (169), Expect = 3e-12
Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 15/241 (6%)
Query: 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILST 154
++ GIV CG PG + V+ L L + T+ G G +GL+ + +++ + + T
Sbjct: 88 VKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKT 147
Query: 155 YKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 214
GG +LG + R + ++ L +GG ++ A + +
Sbjct: 148 IHRLGG-TILGSS----RGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRR 202
Query: 215 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274
K VVG+P T++ D+ ++ + GF T + I +A SA+ ++LMG
Sbjct: 203 KLNISVVGIPKTIDNDIP--IIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMG 260
Query: 275 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334
R + +AL ++ S V L E L + + + ++ R ++ H VI++ E
Sbjct: 261 RDSGFIALHASVASADVNVCLIPEFD------IPL-EGVLEYIEQRLQKKG-HCVIVVAE 312
Query: 335 G 335
G
Sbjct: 313 G 313
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 61.8 bits (151), Expect = 5e-10
Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 21/247 (8%)
Query: 95 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL---FAQKTLEVTKEI 151
++ IV CG PG ++V+ + L H +LG G +GL + +E+T E+
Sbjct: 81 VKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEV 140
Query: 152 LSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 211
++ GG +LG ++ E V+ +N++ L +IGG + A+ +AE
Sbjct: 141 VADIHEFGG-TILGSSRGPQDPEEIVDTLE----RMNINILFVIGGDGTLRGASAIAEEI 195
Query: 212 AEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIR 271
V+G+P T++ D+ F++ + GF+T + ++ I +A A ++
Sbjct: 196 ERRGLKISVIGIPKTIDNDIN--FIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVK 253
Query: 272 LMGRRASHVALECTL-QSHPNMVILGEEVAASKLTLFDLTKQ--ICDAVQARAEQDKNHG 328
LMGR + +A L N V++ E FDL + A++ R ++ H
Sbjct: 254 LMGRHSGFIAAYAALASKDVNFVLIPE-------VPFDLEGPNGLLAALEKRL-AERGHA 305
Query: 329 VILLPEG 335
VI++ EG
Sbjct: 306 VIVVAEG 312
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 60.1 bits (146), Expect = 1e-09
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 18/218 (8%)
Query: 75 HFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNV----VWGLYDALKLHNPKSTLL 130
HF RA P ++ E +R IV CG PG + V V GL + +L
Sbjct: 71 HFRRAG---PRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTR----IL 123
Query: 131 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLD 190
G GG G +++ T+ +T ++++ +GG +LG ++ T++ V++ ++ ++
Sbjct: 124 GIDGGYRGFYSRNTIPLTPKVVNDIHKRGG-TILGTSRGGHDTSKIVDS----IQDRGIN 178
Query: 191 GLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNS 250
+ IIGG + A+ + E V G+P T++ D+ ++ + GFDT +
Sbjct: 179 QVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQ 236
Query: 251 QLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQS 288
+ I+ +A S E ++LMGR + +A+ TL S
Sbjct: 237 RAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLAS 274
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 56.5 bits (137), Expect = 1e-08
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 40/252 (15%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKT-----LEVTKE 150
R+G++ G PG + V+ G+ + ++G G GL T LE +
Sbjct: 1 RIGVLTGGGDCPGLNAVIRGVVRR-AIAEYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRG 59
Query: 151 ILSTYKNQGGYDMLGRT-----KDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAA 205
IL +GG +LG + K + +++ A K L LD L+ IGG
Sbjct: 60 ILP----RGG-TILGSSRTNPFKYEEDGDDKIVAN---LKELGLDALIAIGG----DGTL 107
Query: 206 YLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISNVCTDALSA 263
+A A+ P VVGVP T++ DL+ T+ GFDT ++ ++ + + T A S
Sbjct: 108 GIARRLADKGLP--VVGVPKTIDNDLE----ATDYTFGFDTAVEIATEALDRLHTTAESH 161
Query: 264 EKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQ 323
+ + +MGR A +AL + + VIL E+ FD+ +C+ V+ R +
Sbjct: 162 HR-VMVVEVMGRHAGWIALHSGIAGGAD-VILIPEIP------FDI-DSVCEKVRERFAR 212
Query: 324 DKNHGVILLPEG 335
K ++++ EG
Sbjct: 213 GKRFAIVVVAEG 224
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 55.9 bits (136), Expect = 2e-08
Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 55/251 (21%)
Query: 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILS 153
AIR +V G V G+YD G+ G EG + L+ +I+
Sbjct: 19 AIR-AVVRTAISE--GLEVY-GIYD------------GYAGLLEGDIVKLDLKSVSDII- 61
Query: 154 TYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF 211
N+GG +LG R + + E A+ K L +D LV+IGG S A L E
Sbjct: 62 ---NRGG-TILGSARFP-EFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE-- 114
Query: 212 AEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDAL-------SAE 264
P V+G+P T++ D+ + +GFDT N +A+ S+
Sbjct: 115 --HGIP--VIGLPGTIDNDIA--GTDYTIGFDTAL--------NTAVEAIDRLRDTASSH 160
Query: 265 KYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQD 324
+ + + +MGR A +AL + ++++ E FD+ +++C ++ E+
Sbjct: 161 ERVFIVEVMGRHAGDLALHAGIAGGAEVILIPEV-------PFDI-EELCAKIKKGRERG 212
Query: 325 KNHGVILLPEG 335
K H +I++ EG
Sbjct: 213 KKHAIIVVAEG 223
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 56.4 bits (136), Expect = 2e-08
Identities = 49/207 (23%), Positives = 103/207 (49%), Gaps = 10/207 (4%)
Query: 84 PDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQ- 142
P +I E ++ IV CG PG ++V+ + L+++ K+ ++G G G F +
Sbjct: 43 PRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEIYGVKN-IVGIPFGYRGFFEKG 101
Query: 143 -KTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN 201
+ ++++++ GG +LG ++ +T++ V++ + ++ L ++GG ++
Sbjct: 102 LSEMPLSRKVVQNIHLSGG-SLLGVSRGGAKTSDIVDSI----EARGINMLFVLGGNGTH 156
Query: 202 TDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDAL 261
A + + K VVGVP T++ D+ ++ GFDT + + I++ +A
Sbjct: 157 AGANAIHNECRKRKMKVSVVGVPKTIDNDI--LLMDKTFGFDTAVEEAQRAINSAYIEAH 214
Query: 262 SAEKYYYFIRLMGRRASHVALECTLQS 288
SA ++LMGR + +A+ +L S
Sbjct: 215 SAYHGIGLVKLMGRSSGFIAMHASLAS 241
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 52.8 bits (127), Expect = 2e-07
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 25/258 (9%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 155
R+G++ G +PG + + G+ + G G GL A + + + +S
Sbjct: 2 RIGVLTSGGDAPGMNAAIRGV--VRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDI 59
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAEA 214
N+GG + + + E A+ K +D LV+IGG D +Y+ A E
Sbjct: 60 INRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGG-----DGSYMGAMRLTEH 114
Query: 215 KCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 274
P VG+P T++ D+ + +GFDT + I + D S+ + + +MG
Sbjct: 115 GFP--CVGLPGTIDNDIPG--TDYTIGFDTALNTVVEAIDRI-RDTSSSHQRISVVEVMG 169
Query: 275 RRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE 334
R +AL + +++ E FD +++ + ++A E+ K H ++++ E
Sbjct: 170 RHCGDIALAAGIAGGAEFIVIPEAE-------FDR-EEVANRIKAGIERGKKHAIVVVAE 221
Query: 335 GLIESIPEVYALLKEIHS 352
G+ +V L KEI
Sbjct: 222 GVY----DVDELAKEIEE 235
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 51.6 bits (124), Expect = 5e-07
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 22/215 (10%)
Query: 135 GSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNL---NLDG 191
G GL A ++ E +S +GG +G + + A +NL +D
Sbjct: 39 GYAGLVAGNIKQLDWESVSDIIQRGG-TFIGSARCPEFREREGRLK--AAENLKKHGIDA 95
Query: 192 LVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 251
LV+IGG S T A L VG+P T++ D+ + +GFDT +
Sbjct: 96 LVVIGGDGSYTGADLLTSEH-----GFNCVGLPGTIDNDICG--TDYTIGFDTALNTIVE 148
Query: 252 LISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTK 311
I + A S ++ + + +MGR +AL + + + + E F +
Sbjct: 149 AIDRIRDTASSHQRTF-VVEVMGRHCGDLALVAGIAGGADYIFIPEAP-------FW-EE 199
Query: 312 QICDAVQARAEQDKNHGVILLPEGLIESIPEVYAL 346
++C+ ++ E+ K H ++++ EG I+ I +
Sbjct: 200 ELCNRLKRGRERGKRHNIVIVAEGAIDPITSEFVK 234
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 47.8 bits (114), Expect = 9e-06
Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 54/230 (23%)
Query: 130 LGFLGGSEGLFAQ--KTLEVTKEILSTYKNQGGYDMLGRT---------------KDQIR 172
+G ++GL A+ + +E+ + + GG +LG T +D R
Sbjct: 39 IGIRDATQGLMARPPQYIELDLDQVDDLLRMGG-TILGTTNKGDPFAFPMPDGSLRD--R 95
Query: 173 TTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLK 232
+ E ++ +L LD L+ IGG S LA+ + +VG+P T++ D+
Sbjct: 96 SQEIIDGY----HSLGLDALIGIGGDGSLAILRRLAQ-----QGGINLVGIPKTIDNDVG 146
Query: 233 NQFVETNVGFDTICKVNSQLISNVCTDAL-----SAEKYYYFIRL--MGRRASHVALECT 285
E ++GFDT N+ T+AL +A + + L MGR A H+AL
Sbjct: 147 --ATEVSIGFDTA--------VNIATEALDRLHFTAASHNRVMILEVMGRDAGHIALAAG 196
Query: 286 LQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 335
+ + VIL E+ + + +C ++ R E+ KN ++++ E
Sbjct: 197 IAGGAD-VILIPEIPYT-------LENVCKKIRERQEEGKNFCLVVVSEA 238
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 40.4 bits (95), Expect = 0.003
Identities = 56/286 (19%), Positives = 118/286 (41%), Gaps = 26/286 (9%)
Query: 73 LAHFLRATAKVPDAQII-TEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKS-TLL 130
L FL + D +++ +E +R+ I+ G + G + A++ + T++
Sbjct: 367 LETFLFLSIPDDDKKLVPSEASRLRIAIIHVGAPAGGMNAAT---RSAVRYALARGHTVI 423
Query: 131 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTA--CKNLN 188
G GL E+T + + +GG LG T R+ + A +
Sbjct: 424 AIHNGFSGLARHDVRELTWSDVEGWVGEGG-SELG-TN---RSLPGDDLGTIAYYFQQHK 478
Query: 189 LDGLVIIGGVTSNTDAAYLA---ETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTI 245
+DGL+IIGG + L E + + P V +P T++ ++ E ++G DT
Sbjct: 479 IDGLIIIGGFEAFEALYQLDAAREKYPAFRIPM--VVIPATISNNVPG--TEYSLGSDTA 534
Query: 246 CKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLT 305
++ N+ A ++++ + + MG + ++A L + + + EE ++
Sbjct: 535 LNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEE----GIS 590
Query: 306 LFDLTKQICDAVQARAEQDKNHGVILLPEGLIESI--PEVYALLKE 349
L DL + I + ++ + + +IL E + + ++ E
Sbjct: 591 LKDLQEDI-EHLKETFAEGRAGKLILRNEKASKVYTTDFIARIISE 635
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 38.8 bits (91), Expect = 0.007
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 125 PKSTLLGFLGGSEGLFAQKTLEVTKEILSTY---KNQGGYDM------LGRTKDQIR--- 172
P+ ++ + G +GL ++E+T + + GG + L D ++
Sbjct: 34 PEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLTNVADCVKRGL 93
Query: 173 TTEQVNAALTACKNLNLDGLVI---IGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNG 229
E N A + L DG+ I IGG +NT AA LA AE VVG+P T++
Sbjct: 94 VKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDN 153
Query: 230 D 230
D
Sbjct: 154 D 154
>gnl|CDD|200574 cd10950, CE4_BsYlxY_like, Putative catalytic NodB homology domain
of uncharacterized protein YlxY from Bacillus subtilis
and its bacterial homologs. The Bacillus subtilis
genome contains six polysaccharide deacetylase gene
homologs: pdaA, pdaB (previously known as ybaN), yheN,
yjeA, yxkH and ylxY. This family is represented by
Bacillus subtilis putative polysaccharide deacetylase
BsYlxY, encoded by the ylxY gene, which is a member of
the carbohydrate esterase 4 (CE4) superfamily. Although
its biological function still remains unknown, BsYlxY
shows high sequence homology to the catalytic domain of
Bacillus subtilis pdaB gene encoding a putative
polysaccharide deacetylase (BsPdaB), which is essential
for the maintenance of spores after the late stage of
sporulation and is highly conserved in spore-forming
bacteria. However, disruption of the ylxY gene in B.
subtilis did not cause any sporulation defect. Moreover,
the Asp residue in the classical His-His-Asp
zinc-binding motif of CE4 esterases is mutated to a Val
residue in this family. Other catalytically relevant
residues of CE4 esterases are also not conserved, which
suggest that members of this family may be inactive.
Length = 188
Score = 31.5 bits (72), Expect = 0.76
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 28/91 (30%)
Query: 111 NVVWG------LYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQG----- 159
NV WG + L+ H+ K+T FL G +A+K ++ ++I G
Sbjct: 13 NVAWGEEYLPAMLTILEKHDVKATF--FLEGR---WAKKNPDLVRKI----AKDGHEIGN 63
Query: 160 -GY---DML----GRTKDQIRTTEQVNAALT 182
GY D + +++IR T ++ +T
Sbjct: 64 HGYSHPDPSQLSYEQNREEIRKTNEIIEEIT 94
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 29.6 bits (67), Expect = 2.2
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 519 TVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYM-GRIKEL 577
++ +A +L+ +N RF + ++ V +G +A L D ++ G L
Sbjct: 48 AIERNPEALDLIERNLRRFGVSNI------VIVEGDAPEAPEDLLPDPDAVFVGGSGGLL 101
Query: 578 QKYLDEVRTIVKPG 591
Q+ L+ V ++PG
Sbjct: 102 QEILEAVERRLRPG 115
>gnl|CDD|219974 pfam08696, Dna2, DNA replication factor Dna2. Dna2 is a DNA
replication factor with single-stranded DNA-dependent
ATPase, ATP-dependent nuclease, ( 5'-flap endonuclease)
and helicase activities. It is required for Okazaki
fragment processing and is involved in DNA repair
pathways.
Length = 209
Score = 30.3 bits (69), Expect = 2.3
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 346 LLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEK 405
L K + L G D + ++ A+ + ++KK P S+ + E E
Sbjct: 123 LEKYLEELYLLGESQDEVREEVMEHLPAIEGWAEQYVKK----SPSSESISVSGTGEKET 178
Query: 406 L-LAHLVEVEMN 416
L ++ L+++E N
Sbjct: 179 LSISKLLDIEEN 190
>gnl|CDD|225379 COG2823, OsmY, Predicted periplasmic or secreted lipoprotein
[General function prediction only].
Length = 196
Score = 30.0 bits (68), Expect = 2.9
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 162 DMLGRTKDQIRTTEQVNAALTACKNLN--------LDGLVIIGGVTSNTDAAYLAETFAE 213
+ GR+ D T +V AAL N+ +G V + G+ + + A AE A
Sbjct: 122 SLGGRSNDT-WITTKVKAALLGDDNVKSSNIKVETENGEVYLSGLVDSQEEAERAEEIAS 180
Query: 214 AKCPTKVVGV 223
KV GV
Sbjct: 181 -----KVSGV 185
>gnl|CDD|232852 TIGR00167, cbbA, ketose-bisphosphate aldolase. This model is under
revision. Proteins found by this model include
fructose-bisphosphate and tagatose-bisphosphate aldolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 288
Score = 30.0 bits (68), Expect = 3.5
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA--ETFAEAK---CPTKVVGVPVTLN 228
E +NA L A VII SN A Y+A + GVPV L+
Sbjct: 28 LETINAVLEAAAEEK--SPVIIQ--FSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALH 83
Query: 229 GD 230
D
Sbjct: 84 LD 85
>gnl|CDD|218696 pfam05692, Myco_haema, Mycoplasma haemagglutinin. This family
consists of several haemagglutinin sequences from
Mycoplasma synoviae and Mycoplasma gallisepticum. The
major plasma membrane proteins, pMGAs, of Mycoplasma
gallisepticum are cell adhesin (hemagglutinin)
molecules. It has been shown that the genetic
determinants that code for the haemagglutinins are
organised into a large family of genes and that only one
of these genes is predominately expressed in any given
strain.
Length = 437
Score = 30.0 bits (68), Expect = 4.3
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 154 TYKNQGGYDMLGRTKDQIRTTEQVNAALT-ACKNLNL-DGL--VIIGGVTSNTDAAYL 207
T ++ + LG T D TT ++ +T K L L GL ++I G T+N +A Y+
Sbjct: 372 TVLSKNNWTTLG-TFDTATTTTTNSSTVTNNKKTLTLKKGLNKIVISGGTNNGNAPYI 428
>gnl|CDD|184849 PRK14847, PRK14847, hypothetical protein; Provisional.
Length = 333
Score = 28.8 bits (64), Expect = 7.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 304 LTLFDLTKQICDAVQARAEQDKNHGVIL-LPEGLIESIPEVYA 345
L D +++CDAV A +I+ LP + S VYA
Sbjct: 183 LAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYA 225
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 29.1 bits (65), Expect = 7.8
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 230 DLKNQFVETNVGFDTIC--KVNSQLISNVC-TDALSAEKYYYFIRLMGRRASHVALECTL 286
L+++ VET TI + ++ + + DAL FI+++G+ AS V L
Sbjct: 213 SLRDRVVETQKLNSTIQLDQQHTAYLDLLANADAL-------FIQVLGQTASTVTLHQLS 265
Query: 287 ----------QSHPNMVILGEEVAASKLTLFDLTKQICDA--VQARAEQDKNHGVILLPE 334
SHP V +E+ A L +K++ +A A ++ + ++ +
Sbjct: 266 DELDAIGHNDLSHPITVDGRDEIGAQSEQLILYSKKVEEAFRTNALSQIGNSQQQLITCD 325
Query: 335 GLIESIPEVYALLKEIHSLL 354
G IES L + SL
Sbjct: 326 GQIESANPSAGALILLESLA 345
>gnl|CDD|235405 PRK05320, PRK05320, rhodanese superfamily protein; Provisional.
Length = 257
Score = 28.8 bits (65), Expect = 7.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 292 MVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILL-PEGL-------IESIPEV 343
M I+ +AA K D + + V AR E G ILL PEG+ E+I
Sbjct: 1 MQIV--NIAAYKFVSLDDPETLRPLVLARCEALGLKGTILLAPEGINLFLAGTREAIDAF 58
Query: 344 YALLK 348
YA L+
Sbjct: 59 YAWLR 63
>gnl|CDD|224205 COG1286, CvpA, Uncharacterized membrane protein, required for
colicin V production [General function prediction only].
Length = 182
Score = 28.4 bits (64), Expect = 9.0
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 335 GLIESIPEVYALLKEIHSLLRQGVPV--DNISSQLSPWAS----ALFEFLPPFIKKQLLL 388
G + + + +L + + G D + S L P AL +LP +++
Sbjct: 106 GALRGVLILAIVLFFLAGI--TGFKDTPDWLQSSLYPLLLPPIEALQNYLPSSSVALIII 163
Query: 389 QPESDDSAQLSQIETEKL 406
S L + T+ L
Sbjct: 164 FHTPKLSNFLQNLWTQNL 181
>gnl|CDD|182652 PRK10693, PRK10693, response regulator of RpoS; Provisional.
Length = 303
Score = 28.4 bits (64), Expect = 10.0
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 14/48 (29%)
Query: 323 QDKNHGVI-----------LLPEGLIE---SIPEVYALLKEIHSLLRQ 356
+ ++GV+ LL E L +PE+ ALLK+++ LLRQ
Sbjct: 173 RAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQ 220
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,565,836
Number of extensions: 3101264
Number of successful extensions: 3013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2951
Number of HSP's successfully gapped: 52
Length of query: 623
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 520
Effective length of database: 6,369,140
Effective search space: 3311952800
Effective search space used: 3311952800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)