RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006961
(623 letters)
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 606 bits (1563), Expect = 0.0
Identities = 189/543 (34%), Positives = 305/543 (56%), Gaps = 26/543 (4%)
Query: 37 MQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIR 96
++ + T D ++ F +TYG P+ F + + + A+
Sbjct: 21 LKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSL------SFSKALN 74
Query: 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYK 156
+GI+ G +PGGHNV+ G++DA+K NP S L GF GG GL +E+T+ ++++Y+
Sbjct: 75 IGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYR 134
Query: 157 NQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKC 216
N GG+D++ + +I T E N AL K NL+ ++IIGG SNT+AA LAE F +
Sbjct: 135 NTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGE 194
Query: 217 PTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRR 276
+V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C DA+S +KY++F++LMGR
Sbjct: 195 NIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRS 254
Query: 277 ASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 336
ASHVALEC L++HPN+ I+ EEV A K TL ++ ++ + R+ N GV+++PEGL
Sbjct: 255 ASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGL 314
Query: 337 IESIPEVYALLKEIHSLLRQGVPV----------DNISSQLSPWASALFEFLPPFIKKQL 386
IE IPEV +L+ E+ + + + ++LS + ++ LP FI+ +L
Sbjct: 315 IEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFEL 374
Query: 387 ---LLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGS 443
+L+ + + +S++ TEKL +++ +N K G YKG F + HFFGY+ R +
Sbjct: 375 IKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG-SFTPVDHFFGYEGRSA 433
Query: 444 LPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQ 503
PS FD DY Y LG+ ++ GL GYM+ + NL W G P+T +M ++
Sbjct: 434 FPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEE--- 490
Query: 504 NPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTL 563
+P I A VD+ G+ ++ +N ++ L++LY PGPVQ+ G +T
Sbjct: 491 ---RYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEITE 547
Query: 564 CVE 566
++
Sbjct: 548 TLK 550
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 97.9 bits (244), Expect = 9e-22
Identities = 62/302 (20%), Positives = 112/302 (37%), Gaps = 21/302 (6%)
Query: 37 MQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIR 96
+ + R EF D T S + A ++I
Sbjct: 43 SKKYSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELA---AARSRIHFNPTETT 99
Query: 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLF---AQKTLEVTKEILS 153
+GIV CG PG ++V+ + ++GF G GL +Q +E+ + ++
Sbjct: 100 IGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVT 159
Query: 154 TYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAE 213
+ GG +LG + R + + + L ++ L +GG + A +++
Sbjct: 160 NIHHYGG-TILGSS----RGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKR 214
Query: 214 AKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLM 273
V GVP T++ DL F GF T + Q I +A+SA ++LM
Sbjct: 215 RGVDISVFGVPKTIDNDL--SFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLM 272
Query: 274 GRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333
GR + +A + + S + L E +++ ++ R VI++
Sbjct: 273 GRDSGFIAAQAAVASAQANICLVPENP------ISE-QEVMSLLERRFCH-SRSCVIIVA 324
Query: 334 EG 335
EG
Sbjct: 325 EG 326
Score = 28.5 bits (64), Expect = 7.2
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 437 GYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 477
Y R PS D + L + H AG G + + +
Sbjct: 379 SYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRH 419
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 78.2 bits (193), Expect = 2e-15
Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 36/254 (14%)
Query: 94 AIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILS 153
+ G++ R+ G + +Y G +G E I +
Sbjct: 21 SAA-GVIEAARKQSG---KIGRIYAGRN---------GIIGALTEDLIDTGQESDAAISA 67
Query: 154 TYKNQGGYDMLGRT----KDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAE 209
+ G K + + + K ++ GG S +++
Sbjct: 68 L-RYTPS-GAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQ 125
Query: 210 TFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAE---KY 266
P + + VP T++ DL + GF ++ K + D S
Sbjct: 126 LSGTLGYPIQAIHVPKTVDNDLPI--TDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK 183
Query: 267 YYFIRLMGRRASHVALECTL----QSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAE 322
+ + +MGR A +A L + +VIL E++ FD ++ V + +
Sbjct: 184 VFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEIS------FDK-QKFLAKVDSCVK 236
Query: 323 QDKNHGVILLPEGL 336
+ + +++ EG+
Sbjct: 237 K-FGYCSVVVSEGV 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.4 bits (187), Expect = 2e-14
Identities = 86/615 (13%), Positives = 169/615 (27%), Gaps = 182/615 (29%)
Query: 67 HTYGQPLAHFLRATAK------VPDA--QIIT----EHPAIRVGIVFCGRQSPGGHNVVW 114
+ Y L+ F A V D I++ +H I+ S +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH------II----MSKDAVSGTL 65
Query: 115 GLYDALKLHNPKSTLLGFLGGSE----GLFAQKTLEVTKE---ILSTYKNQGGYDMLGR- 166
L+ L L + + F+ ++ + Y Q D L
Sbjct: 66 RLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYND 122
Query: 167 ----TKDQIRTTEQVNAALTACKNLNLDGLVIIGGV-----TSNTDAAYLAE-------- 209
K + + A L V+I GV T L+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 210 -----TFAEAKCPTKVV----------------------GVPVTLN---GDLKNQFVET- 238
P V+ + + ++ +L+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 239 ---------NV-------GFDTICKVNSQLI----SNVCTDALSAEKYYY---------- 268
NV F+ CK+ L+ V TD LSA +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQV-TDFLSAATTTHISLDHHSMTL 298
Query: 269 --------FIRLMGRRASHVALECTLQSHPNMV-ILGEEVAASKLTLFDLTKQI-CDAVQ 318
++ + R + E L ++P + I+ E + T +D K + CD +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLT 356
Query: 319 ARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQ-LSP-WASALFE 376
E N L P E + + S+ +I + LS W +
Sbjct: 357 TIIESSLNV---LEPA-------EYRKMFDRL-SVFPPSA---HIPTILLSLIWFDVIKS 402
Query: 377 ----FLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAI 432
+ K L+ + + + + I E + E +++ + + Y K
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK---- 457
Query: 433 CHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN-----------LKNP 481
+ + +P D Y Y HI +H+ M +++
Sbjct: 458 ----TFDSDDLIPPYLD-QYFY--SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 482 ANKWRCGAAPITSMMTVKRWSQ----NPGA-----SSIGRPAINPATVDMRGKAYELLR- 531
+ W + + ++ +K + N ++I + K +LLR
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 532 --QNATRFLLDDLYR 544
+ ++ ++
Sbjct: 571 ALMAEDEAIFEEAHK 585
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 64.4 bits (158), Expect = 2e-11
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 39/229 (17%)
Query: 131 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 188
G G GL+ + +++ + +S N+GG LG R + R A+ K
Sbjct: 37 GIYDGYLGLYEDRMVQLDRYSVSDMINRGG-TFLGSARFPE-FRDENIRAVAIENLKKRG 94
Query: 189 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 248
+D LV+IGG S A L E +G+P T++ D+ + + +GF T
Sbjct: 95 IDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDI--KGTDYTIGFFTAL-- 144
Query: 249 NSQLISNVCTDAL-------SAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAA 301
+ +A+ S+ + + +MGR + L + V++ E
Sbjct: 145 ------STVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEV--- 195
Query: 302 SKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 350
F + + + ++A + K H ++ + E + +V L I
Sbjct: 196 ----EFSR-EDLVNEIKAGIAKGKKHAIVAITEHMC----DVDELAHFI 235
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 63.2 bits (155), Expect = 5e-11
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 43/231 (18%)
Query: 131 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 188
G G GL + K ++ + ++GG L R + +T E + K L
Sbjct: 36 GIYNGYAGLISGKIEKLELGSVGDIIHRGG-TKLYTARCPE-FKTVEGREKGIANLKKLG 93
Query: 189 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNV--GFDTIC 246
++GLV+IGG S A L E VGVP T++ D+ T+ GFDT
Sbjct: 94 IEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDI----PGTDFTIGFDTAL 143
Query: 247 KVNSQLISNVCTDAL-------SAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEV 299
N DA+ ++ + Y I +MGR A +AL L +++ E
Sbjct: 144 --------NTVIDAIDKIRDTATSHERTYVIEVMGRHAGDIALWAGLAGGAESILIPEA- 194
Query: 300 AASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEI 350
+D+ +I ++ E+ K H +I++ EG+ K I
Sbjct: 195 ------DYDM-HEIIARLKRGHERGKKHSIIIVAEGVGSG----VEFGKRI 234
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 62.8 bits (154), Expect = 8e-11
Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 24/222 (10%)
Query: 131 GFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKNLN 188
G G GL A + E ++ N G L R + E A + K
Sbjct: 36 GIRYGFAGLVAGDIFPLESEDVAHLINVSG-TFLYSARYPE-FAEEEGQLAGIEQLKKHG 93
Query: 189 LDGLVIIGGVTSNTDAAYL-AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICK 247
+D +V+IGG D +Y A +G+P T++ D+ + + +G+DT C
Sbjct: 94 IDAVVVIGG-----DGSYHGALQLTRHGFN--SIGLPGTIDNDI--PYTDATIGYDTACM 144
Query: 248 VNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLF 307
I + A S + + + +MGR +A+ + + +++ E +
Sbjct: 145 TAMDAIDKIRDTASSHHR-VFIVNVMGRNCGDIAMRVGVACGADAIVIPER-------PY 196
Query: 308 DLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKE 349
D+ ++I + ++ E K+HG++++ EG + + + A LK+
Sbjct: 197 DV-EEIANRLKQAQESGKDHGLVVVAEG-VMTADQFMAELKK 236
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 60.1 bits (146), Expect = 2e-09
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 15/211 (7%)
Query: 128 TLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACK 185
+L G EG + E + + QGG LG RT ++ EQ++A +
Sbjct: 432 RVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGG-SKLGSKRTL-PKKSFEQISANI---T 486
Query: 186 NLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDT 244
N+ GLVIIGG + T L E + V +P T++ ++ + +VG DT
Sbjct: 487 KFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNV--PGSDFSVGADT 544
Query: 245 ICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKL 304
+ A ++ + I MG ++A L + + + EE
Sbjct: 545 ALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEE----PF 600
Query: 305 TLFDLTKQICDAVQARAEQDKNHGVILLPEG 335
T+ DL + + + + + G++L E
Sbjct: 601 TIRDLQANV-EHLVQKMKTTVKRGLVLRNEK 630
Score = 49.3 bits (118), Expect = 3e-06
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 33/203 (16%)
Query: 157 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETF--- 211
GG ++G R KD R E A + L +IGG S T A +
Sbjct: 78 QLGG-TVIGSARCKD-FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDL 135
Query: 212 --------------AEAKCPTKVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 255
A +VG+ ++ D N F T++ G D+ ++++
Sbjct: 136 LSDLQKAGKITAEEATRSSYLNIVGLVGSI--D--NDFCGTDMTIGTDSALHRITEIVDA 191
Query: 256 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 315
+ T A S ++ + + +MGR ++AL +L + V + E + +C
Sbjct: 192 ITTTAQSHQR-TFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDD-----NWEDHLCR 245
Query: 316 AVQARAEQDKNHGVILLPEGLIE 338
+ + +I++ EG I+
Sbjct: 246 RLSETRTRGSRLNIIIVAEGAID 268
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 59.8 bits (145), Expect = 2e-09
Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 50/297 (16%)
Query: 76 FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHN------VVWGLYDALKLHNPKSTL 129
FL + + ++ E + + I+ G + N + L ++
Sbjct: 580 FLSVSKYDDGSYLVPESSRLNIAIIHVGAPTSA-LNPATRVATLNSLAKGHRV------- 631
Query: 130 LGFLGGSEGLFAQKTL-EVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKN 186
G GL + E+ + + N GG +G R+ ++ + +
Sbjct: 632 FAIRNGFAGLIRHGAVRELNWIDVEDWHNTGG-SEIGTNRSL----PSDDMGTVAYYFQQ 686
Query: 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDTI 245
DGL+IIGG + T L A+ + +P T++ ++ E ++G DT
Sbjct: 687 YKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNV--PGTEYSLGSDTC 744
Query: 246 CKVNSQLISNVCTDAL-----SAEKYY---YFIRLMGRRASHVALECTLQSHPNMVILGE 297
N + SA + + + G + ++A L + V E
Sbjct: 745 L--------NTLSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGALAVYTPE 796
Query: 298 EVAASKLTLFDLTKQI---CDAVQARAEQDKNHGVILLPEGLIESIP--EVYALLKE 349
+ L + + I + ++++ + + E + + A++ E
Sbjct: 797 N----PINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKASKVYTTDLIAAIIGE 849
Score = 52.1 bits (125), Expect = 5e-07
Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 34/221 (15%)
Query: 157 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 214
+ GG ++G R K+ R A + +D LV+ GG S T A + + E
Sbjct: 273 SIGG-TIIGTARCKE-FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPEL 330
Query: 215 KCPT-----------------KVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 255
+VG+ ++ D N T+ G + + +L+
Sbjct: 331 IKELLGEDKITKEQYETHRNLTIVGLVGSI--D--NDMCGTDSTIGAYSSLERIIELVDY 386
Query: 256 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 315
+ A S + + + +MGR + L + + + + + E + + +
Sbjct: 387 IDATAASHSR-AFVVEVMGRHCGWLGLMSGIATGADYIFIPER----PPSESNWKDDLKK 441
Query: 316 AVQARAEQDKNHGVILLPEGLI--ESIPEVYALLKEIHSLL 354
E+ + +++ EG I + P +K++ +
Sbjct: 442 VCLRHREKGRRKTTVIVAEGAIDDQLNPITSEEVKDVLVEI 482
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 58.5 bits (142), Expect = 4e-09
Identities = 51/301 (16%), Positives = 100/301 (33%), Gaps = 58/301 (19%)
Query: 76 FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHN------VVWGLYDALKLHNPKSTL 129
FL T K ++++ + +GIV G S N ++ L
Sbjct: 375 FLSTTVKDDGSELLPVSDRLNIGIVHVGAPSAA-LNAATRAATLYCLSHGH-------KP 426
Query: 130 LGFLGGSEGLF-AQKTLEVTKEILSTYKNQGGYDMLG--RTKDQIRTTEQVNAALTACKN 186
+ G GL + E++ + + N GG +G R+ +E + +
Sbjct: 427 YAIMNGFSGLIQTGEVKELSWIDVENWHNLGG-SEIGTNRSV----ASEDLGTIAYYFQK 481
Query: 187 LNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNGDLKNQFVETNVGFDTI 245
LDGL+I+GG L + + + +P T++ ++ E ++G DT
Sbjct: 482 NKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNV--PGTEYSLGVDTC 539
Query: 246 CKVNSQLISNVCTDAL-----SAEKYY---YFIRLMGRRASHVALECTLQSHPNMVILGE 297
N + SA + + G + ++A L + V E
Sbjct: 540 L--------NALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGAVSVYTPE 591
Query: 298 EVAASKLTLFDLTKQICDAVQARAEQ-------DKNHGVILLPEGLIE--SIPEVYALLK 348
+ DL I + + E ++N +++ E S + ++
Sbjct: 592 KK-------IDL-ASIREDITLLKENFRHDKGENRNGKLLVRNEQASSVYSTQLLADIIS 643
Query: 349 E 349
E
Sbjct: 644 E 644
Score = 51.6 bits (124), Expect = 6e-07
Identities = 35/217 (16%), Positives = 80/217 (36%), Gaps = 34/217 (15%)
Query: 157 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 214
++GG ++G R+ + R E A + +D LV+ GG S T A +
Sbjct: 68 SEGG-TLIGTARSME-FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSL 125
Query: 215 KCPT-----------------KVVGVPVTLNGDLKNQFVETN--VGFDTICKVNSQLISN 255
+VG+ ++ D N T+ +G + + +++
Sbjct: 126 VDELVAEGRFTKEEVAPYKNLSIVGLVGSI--D--NDMSGTDSTIGAYSALERICEMVDY 181
Query: 256 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 315
+ A S + + + +MGR +AL + + + + + E + ++ +
Sbjct: 182 IDATAKSHSR-AFVVEVMGRHCGWLALMAGIATGADYIFIPER----AVPHGKWQDELKE 236
Query: 316 AVQARAEQDKNHGVILLPEGLI--ESIPEVYALLKEI 350
Q + + + I++ EG + + P +K+
Sbjct: 237 VCQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDA 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 1e-08
Identities = 86/523 (16%), Positives = 166/523 (31%), Gaps = 174/523 (33%)
Query: 5 FLFNPSDPQSFHFWDIALLAIYLLQMF--SFNANMQGTTVRVEFGDSTTTADPADTHSIS 62
++ + +P +D L L F + ++G D H+++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNL--CLTEFENCY---LEGN----------------DIHALA 105
Query: 63 RSFPHTYGQPLA---HFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDA 119
L ++ A+I+ + P + S L+ A
Sbjct: 106 AKLLQENDTTLVKTKELIKNYIT---ARIMAKRPFDK------KSNSA--------LFRA 148
Query: 120 LKLHNPKSTLLGFLGG---SEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQ 176
+ + L+ GG ++ F +E+ Y+ Y +L D I+ + +
Sbjct: 149 VG--EGNAQLVAIFGGQGNTDDYF--------EELRDLYQT---YHVL--VGDLIKFSAE 193
Query: 177 VNAALTA----CKNLNLDGLVIIG---GVTSNTDAAYLAETFAEAKCP------------ 217
+ L + + GL I+ ++ D YL CP
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS--IPISCPLIGVIQLAHYVV 251
Query: 218 -TKVVGV-PVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCT-DALSAEKYYYFIRLMG 274
K++G P G+L++ T + L++ V + S E ++ +R
Sbjct: 252 TAKLLGFTP----GELRSYLKGA-----TGH--SQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 275 RRASHVALECTLQSHPNMVI----------LGEEVAASKLTLFDLTKQICDAVQARAEQD 324
+ + C +++PN + E V + L++ +LT+ + VQ +
Sbjct: 301 TVLFFIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ---EQVQDYVNKT 356
Query: 325 KNHGVILLPEGLIESI--------------PE-VYALLKEIHSL-----LRQG-VPVDNI 363
+H LP G I P+ +Y L + L Q +P
Sbjct: 357 NSH----LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP---- 408
Query: 364 SSQLSPWASALFEFLP---PF-----------IKKQLLLQPESDDSAQLS---------- 399
S+ S FLP PF I K L+ S ++ +
Sbjct: 409 FSERKLKFSN--RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 400 --QIETEKLLAHLVEVEMNKRLK-EGTYKGKKFNAICHF--FG 437
++ + + +V+ + +K E T +F A H FG
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETT---TQFKAT-HILDFG 505
Score = 55.4 bits (133), Expect = 5e-08
Identities = 59/337 (17%), Positives = 94/337 (27%), Gaps = 131/337 (38%)
Query: 54 DPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVV 113
+ AD H F TYG + I+ +P + + I F G G +
Sbjct: 1647 NRADNH-----FKDTYGFSILD------------IVINNP-VNLTIHFGG---EKGKRIR 1685
Query: 114 WGLYDALKLH----------------NPKSTLLGFLGGSEGL-----FAQ---KTLEVTK 149
Y A+ N ST F +GL F Q +E
Sbjct: 1686 -ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGLLSATQFTQPALTLMEKA- 1742
Query: 150 EILSTYKNQGGYDM--------LGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSN 201
K++G LG E AAL + V S
Sbjct: 1743 -AFEDLKSKGLIPADATFAGHSLG---------E--YAALASL-----------ADVMSI 1779
Query: 202 TDAAYL----AETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 257
+ T A VP G +N G + +N ++
Sbjct: 1780 ESLVEVVFYRGMTMQVA--------VPRDELG-------RSNYG---MIAINPGRVAASF 1821
Query: 258 TDALSAEKYYYFIRLMGRRASHVALE-----CTLQSHPNM--VILGEEVAASKLTLFDLT 310
+ E Y + +G+R + +E N V G+ A +T
Sbjct: 1822 SQ----EALQYVVERVGKRTGWL-VEIVNYNV-----ENQQYVAAGDLRALDTVT----- 1866
Query: 311 KQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALL 347
+ + ++ + +I L + L S+ EV L
Sbjct: 1867 -NVLNFIKL-----QKIDIIELQKSL--SLEEVEGHL 1895
Score = 44.7 bits (105), Expect = 9e-05
Identities = 60/332 (18%), Positives = 110/332 (33%), Gaps = 99/332 (29%)
Query: 287 QSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEV--- 343
Q M G ++ + + + + RA D H + SI ++
Sbjct: 1627 QE-QGM---GMDLYKT----SKAAQDVWN----RA--DN-H----FKDTYGFSILDIVIN 1667
Query: 344 YALLKEIHSLLRQGVPV-DNISS---QLSPWASALFEFLPPFIKKQLLLQPESDDSAQLS 399
+ IH +G + +N S+ + E + I + + LS
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 400 QIETEK----LLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYV 455
T+ L +E + LK +G +P+ A
Sbjct: 1728 A--TQFTQPALTL--MEKAAFEDLKS-------------------KGLIPAD-----ATF 1759
Query: 456 LGH----ICYHILAAGLNGYMATVTNLKNPAN--KWRCGAAPITSMMTVKRWSQNPGASS 509
GH Y LA+ +A V ++++ +R G +T + V R G S+
Sbjct: 1760 AGHSLGE--YAALAS-----LADVMSIESLVEVVFYR-G---MTMQVAVPRDEL--GRSN 1806
Query: 510 IGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPG----PVQFDGPGA------DAK 559
G AINP V Q A +++++ + + G V ++ D +
Sbjct: 1807 YGMIAINPGRVAAS------FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 560 AVTLCVEDRDYMG--RIK--ELQK--YLDEVR 585
A+ +++ +I ELQK L+EV
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 37.3 bits (86), Expect = 0.016
Identities = 48/284 (16%), Positives = 69/284 (24%), Gaps = 109/284 (38%)
Query: 351 HSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPE---SDDSAQLSQIETEKLL 407
H L + V + AS L E F K L +P + D + E L+
Sbjct: 13 HGSLEHVLLV---PTASFFIASQLQEQ---FNKI--LPEPTEGFAADDEPTTPAE---LV 61
Query: 408 AHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSK--------------FDCDYA 453
F GY + PSK F+ Y
Sbjct: 62 GK-------------------------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY- 95
Query: 454 YVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRP 513
L H LAA L T K IT+ + KR S++ R
Sbjct: 96 --LEGNDIHALAAKLLQENDT----TLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRA 148
Query: 514 AINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGR 573
G A L F G G +D
Sbjct: 149 V-------GEGNA--------------QLV-----AIFGGQGN--------TDD------ 168
Query: 574 IKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSAS 617
Y +E+R + + ++ + A L +
Sbjct: 169 ------YFEELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLD 204
Score = 33.5 bits (76), Expect = 0.29
Identities = 63/400 (15%), Positives = 124/400 (31%), Gaps = 117/400 (29%)
Query: 278 SHVALECTL----QSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLP 333
SH +LE L S L E+ F K + + + A D+ P
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQ--------F--NKILPEPTEGFAADDE-------P 54
Query: 334 EGLIESIPEVYA-LLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIK--------K 384
+ E+ L + SL+ + L EF +++
Sbjct: 55 T----TPAELVGKFLGYVSSLVEPS----KVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 385 QLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKR----LKEGTYKGK-KFNAICHFFGYQ 439
+LL + ++ I+ + + +K+ L +G + AI FG Q
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI---FGGQ 163
Query: 440 ARGSLPSKFD------CDYAYVLGHICYHILAAGLNGYMATVTN--------------LK 479
G+ F+ Y ++G + A L+ + T + L+
Sbjct: 164 --GNTDDYFEELRDLYQTYHVLVGDLI-KFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 480 NPANK----WRCGAAPITSM------------MTVKRWSQNP--------GASSIGR--- 512
NP+N + + PI S +T K P GA+ +
Sbjct: 221 NPSNTPDKDYLL-SIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 513 PAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQ--FDGPGADAKAVTLCVEDRD- 569
A+ A D + +R+ A L R + + +E+ +
Sbjct: 279 TAVAIAETDSWESFFVSVRK-AITVLFFIGVR----CYEAYPNTSLPPSILEDSLENNEG 333
Query: 570 ---YM----G-RIKELQKYLDEVRTIVKPGCSQEVLKAAL 601
M +++Q Y+++ + + G + ++ +L
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAG---KQVEISL 370
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 56.1 bits (136), Expect = 2e-08
Identities = 44/305 (14%), Positives = 99/305 (32%), Gaps = 47/305 (15%)
Query: 67 HTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPG---------------GHN 111
+ + L +F+ + + + + +++ IV G + G GH
Sbjct: 366 TEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMSQGHR 425
Query: 112 VVWGLYDALKLHNPKSTLLGFLGGSEGLFAQK-TLEVTKEILSTYKNQGGYDMLGRTKDQ 170
+Y+ G+ G + + + ++GG +G T
Sbjct: 426 PY-AIYN------------GWSGLARHESVRSLNWKDMLGWQ----SRGG-SEIG-TNRV 466
Query: 171 IRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPT-KVVGVPVTLNG 229
+ + DGL+I+GG + L +V +P TL+
Sbjct: 467 TPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSN 526
Query: 230 DLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSH 289
++ E ++G DT + V A S + + G + ++A +L
Sbjct: 527 NV--PGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVG 584
Query: 290 PNMVILGEEVAASKLTLFDLTKQI---CDAVQARAEQDKNHGVILLPEGL--IESIPEVY 344
+ + EE ++L L++ I + + + + +IL S ++
Sbjct: 585 AQVSYVPEE----GISLEQLSEDIEYLAQSFEKAEGRGRFGKLILKSTNASKALSATKLA 640
Query: 345 ALLKE 349
++
Sbjct: 641 EVITA 645
Score = 47.3 bits (113), Expect = 1e-05
Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 32/200 (16%)
Query: 157 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 214
+GG +G R + + E +D L++ GG S T A +
Sbjct: 67 AEGG-TNIGTARCME-FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 215 KCPT-----------------KVVGVPVTLNGDLKNQFVETNV--GFDTICKVNSQLISN 255
+ G ++ D N T+ G + + I
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSI--D--NDMSTTDATIGAYSALDRICKAIDY 180
Query: 256 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 315
V A S + + + +MGR +AL + + + + + E+ T + Q+CD
Sbjct: 181 VEATANSHSR-AFVVEVMGRNCGWLALLAGIATSADYIFIPEK----PATSSEWQDQMCD 235
Query: 316 AVQARAEQDKNHGVILLPEG 335
V + K ++++ EG
Sbjct: 236 IVSKHRSRGKRTTIVVVAEG 255
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 52.0 bits (125), Expect = 5e-07
Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 36/195 (18%)
Query: 157 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYL-AETFAE 213
+ GG +G RT + + DGL+++GG A++
Sbjct: 633 SLGG-SEIGTNRTLPNDADIGMIAYFF---EKYGFDGLILVGG-----FEAFISLHQLER 683
Query: 214 AKCPT-----KVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDAL-----SA 263
A+ +V +P T++ ++ E ++G DT N + SA
Sbjct: 684 ARINYPSLRIPLVLIPATISNNV--PGTEYSLGSDTCL--------NSFMEYCDVIKQSA 733
Query: 264 EKYY---YFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQAR 320
+ + + G + ++A L + + EE + D+ + ++
Sbjct: 734 AATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGISLAQLEMDI-NSLKESFAND 792
Query: 321 AEQDKNHGVILLPEG 335
+ K+ +IL E
Sbjct: 793 QGKTKSGRLILKSEN 807
Score = 48.2 bits (115), Expect = 7e-06
Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 28/198 (14%)
Query: 157 NQGGYDMLG--RTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEA 214
+GG +G R K+ R A ++ +D L++ GG S T A +
Sbjct: 245 VEGG-TNIGTARCKE-FRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSL 302
Query: 215 KCPT-----------------KVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 257
+ G +++ D+ + +G + + I +
Sbjct: 303 IEELLQTEQISQQQFNTHQNLNICGAVGSIDNDM--SSTDATIGAFSSLDRICRAIDYID 360
Query: 258 TDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAV 317
A S + + + +MGR + L L + + +++ E+ + + Q+CD V
Sbjct: 361 ATANSHSR-AFIVEVMGRHCGWLGLLAGLATSADYILIPEK----PASSREWQDQMCDIV 415
Query: 318 QARAEQDKNHGVILLPEG 335
+ K ++++ EG
Sbjct: 416 GKHRARGKRKTIVIVAEG 433
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.4
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 382 IKK-QLLLQPESDDSA-QL---SQIE 402
+KK Q L+ +DDSA L + +E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 2.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 116 LYDALKLHNPKSTLLGFLGGSEGLFAQKTLE 146
L +LKL+ S + L + T+E
Sbjct: 25 LQASLKLYADDS--------APALAIKATME 47
Score = 28.8 bits (63), Expect = 3.1
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 574 IKELQKYLDEVRTIVKPGCSQEVLKAALSVMASV 607
+K+LQ L + + AL++ A++
Sbjct: 22 LKKLQASL----KLYADDSA-----PALAIKATM 46
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 29.5 bits (66), Expect = 2.6
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 520 VDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVE-DRDYMGRIKELQ 578
++ ++ L +N ++D + D + DR MG +
Sbjct: 154 IEKDPYTFKFLVENIHLNKVED--------RMSAYNMDNRDFPGENIADRILMGYVVRTH 205
Query: 579 KYLDEVRTIVKPGC 592
+++ + +I K G
Sbjct: 206 EFIPKALSIAKDGA 219
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta,
beta alpha domain; 1.90A {Geobacillus kaustophilus}
Length = 161
Score = 28.7 bits (65), Expect = 3.9
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 14/59 (23%)
Query: 182 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 229
L G++I G + D+A + A CP K V + G
Sbjct: 78 QIACERGLAGVIIHGCI---RDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGG 133
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 28.6 bits (63), Expect = 4.1
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 47 GDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCG 103
G + A+ H T + + R I ++HP R+G+ CG
Sbjct: 98 GWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCG 154
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Thermus thermophilus} SCOP:
c.8.7.1
Length = 164
Score = 28.3 bits (64), Expect = 4.4
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 14/59 (23%)
Query: 182 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 229
G+V+ G V D L E A A P K V VP+ + G
Sbjct: 79 RRAWEKGWAGVVVHGAV---RDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLG 134
>2lcu_A BC28.1; alpha-barrel, protein binding; NMR {Babesia canis}
Length = 223
Score = 28.8 bits (63), Expect = 4.7
Identities = 8/61 (13%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 371 ASALFEFLPPFIKKQLLLQPESDDSAQL-SQIETEKLLAHLVEVEMNKRLKEGTYKGKKF 429
A ++ L ++ L+ + D+ ++ + + K++ ++ + N +K +
Sbjct: 105 AISMLYVLSITHRELSSLKNKIDEWKKVKASEDGTKVIQNIKDDRTNTWFVAHGFKVAEL 164
Query: 430 N 430
N
Sbjct: 165 N 165
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 28.9 bits (65), Expect = 4.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 286 LQSHPNMVILGEEVAASKLTL 306
LQ H N +I+ ++ A +L +
Sbjct: 250 LQLHKNAIIVSDKNATYELKV 270
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 28.9 bits (65), Expect = 5.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 286 LQSHPNMVILGEEVAASKLTL 306
Q HP V + +E A +L +
Sbjct: 229 FQQHPRTVFVCDEDATLELKV 249
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone
methyltransferase; beta/BETA/alpha domain, structural
genomics, PSI; HET: TLA; 1.90A {Mycobacterium
tuberculosis} SCOP: c.8.7.1
Length = 183
Score = 28.4 bits (64), Expect = 5.2
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 182 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 229
++ GL++ G V DAA L A P K V +TL G
Sbjct: 109 ELARSTGWTGLIVHGAV---RDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGG 164
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium
bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Length = 899
Score = 29.2 bits (64), Expect = 5.4
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 525 KAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAV 561
Y+L+ + +L+ P Q DG + V
Sbjct: 740 TTYQLVELQLKNAMYANLFDYHAPFQIDGNFGNTSGV 776
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E
regulater, hydrolase regulator; HET: PGE PG4; 1.90A
{Pseudomonas aeruginosa}
Length = 162
Score = 27.9 bits (63), Expect = 5.5
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 182 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTKV-------VGVPVTLNG 229
+G+V+ G + D +A+T A A P K + V VT G
Sbjct: 80 EKAAKNGWEGIVVYGCI---RDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGG 135
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 28.5 bits (64), Expect = 6.0
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 286 LQSHPNMVILGEEVAASKLTL 306
LQ HP +++ +E + +L +
Sbjct: 229 LQLHPKAIMVCDEPSTMELKV 249
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni}
Length = 357
Score = 28.5 bits (64), Expect = 6.3
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 174 TEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLA-------------ETFAEAKCPTKV 220
T+ +NA L A K +N VII SN A + A K
Sbjct: 42 TDSINAVLEAAKKVNSP--VIIQ--FSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKA 97
Query: 221 VGVPVTLNGD 230
GVPV L+ D
Sbjct: 98 YGVPVILHTD 107
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics,
unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Length = 174
Score = 28.0 bits (63), Expect = 6.5
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 182 TACKNLNLDGLVIIGGVTSNTDAAYLAET----FAEAKCPTK-------VVGVPVTLNG 229
+ +G++I G V D ++E A P K V V +T+
Sbjct: 83 ILAIKNDWEGVIIYGAV---RDVVAMSEMDLGIKALGTSPFKTEKRGAGQVNVTLTMQN 138
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 28.3 bits (63), Expect = 7.8
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 520 VDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQK 579
+D+ A ELL++N L+ P+ +D + V + +R M K K
Sbjct: 222 IDINPHAIELLKKNIKLNKLEHKII---PIL-----SDVREVDVK-GNRVIMNLPKFAHK 272
Query: 580 YLDEVRTIVKPGC 592
++D+ IV+ G
Sbjct: 273 FIDKALDIVEEGG 285
>3u24_A Putative lipoprotein; COG4805, DUF885, structural genomics,
PSI-biology, midwest C structural genomics, MCSG, lipid
BIND protein; 2.25A {Shewanella oneidensis}
Length = 572
Score = 28.4 bits (63), Expect = 8.2
Identities = 9/87 (10%), Positives = 21/87 (24%), Gaps = 9/87 (10%)
Query: 514 AINPATVDMRGK-AYELLRQNATRFLLD-----DLYRNPGPVQFDG--PGADAKAVTLCV 565
++ Y L+ + D +P G +
Sbjct: 80 QFELKSLTSNETIDYHLIDNLLSSMAWDITRFKSWQWDPSSYNVAGGFAQIINENFAPLD 139
Query: 566 ED-RDYMGRIKELQKYLDEVRTIVKPG 591
+ R + R++ + Y R +
Sbjct: 140 DRLRSVLARMENIPAYYAAARGNISQP 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,480,485
Number of extensions: 585346
Number of successful extensions: 1275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1237
Number of HSP's successfully gapped: 53
Length of query: 623
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 524
Effective length of database: 3,937,614
Effective search space: 2063309736
Effective search space used: 2063309736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.6 bits)