Query 006962
Match_columns 623
No_of_seqs 83 out of 85
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 16:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 99.9 1.6E-19 3.4E-24 196.8 49.6 444 68-560 26-521 (522)
2 PF05701 WEMBL: Weak chloropla 99.4 3.6E-08 7.7E-13 108.6 43.0 411 71-520 50-516 (522)
3 PRK02224 chromosome segregatio 99.3 8.3E-06 1.8E-10 93.6 57.0 129 398-529 561-690 (880)
4 KOG0161 Myosin class II heavy 99.0 7.8E-05 1.7E-09 92.7 52.7 239 71-349 1099-1340(1930)
5 KOG0161 Myosin class II heavy 99.0 0.00012 2.5E-09 91.2 52.9 111 435-563 1262-1372(1930)
6 PRK02224 chromosome segregatio 98.9 0.0005 1.1E-08 79.2 53.6 42 436-477 513-554 (880)
7 COG1196 Smc Chromosome segrega 98.8 0.00022 4.8E-09 85.5 44.5 109 505-615 958-1117(1163)
8 PF07888 CALCOCO1: Calcium bin 98.8 9.6E-05 2.1E-09 82.6 38.1 232 204-488 228-459 (546)
9 TIGR02168 SMC_prok_B chromosom 98.8 0.0011 2.4E-08 76.6 58.0 40 386-425 745-784 (1179)
10 PF10174 Cast: RIM-binding pro 98.7 0.0012 2.7E-08 76.8 46.1 69 385-455 469-537 (775)
11 KOG4674 Uncharacterized conser 98.7 0.0036 7.7E-08 77.9 51.3 425 69-541 636-1095(1822)
12 PRK03918 chromosome segregatio 98.6 0.0025 5.5E-08 73.2 56.6 33 500-532 667-699 (880)
13 TIGR00606 rad50 rad50. This fa 98.6 0.0042 9.1E-08 75.7 51.7 59 72-130 573-631 (1311)
14 PF10174 Cast: RIM-binding pro 98.6 0.0031 6.7E-08 73.6 48.6 154 71-226 5-165 (775)
15 TIGR02169 SMC_prok_A chromosom 98.6 0.0031 6.8E-08 73.5 58.8 59 503-561 872-930 (1164)
16 TIGR02168 SMC_prok_B chromosom 98.6 0.0031 6.7E-08 73.1 55.7 22 329-350 675-696 (1179)
17 TIGR02169 SMC_prok_A chromosom 98.6 0.0038 8.2E-08 72.8 44.4 41 79-126 166-206 (1164)
18 COG1196 Smc Chromosome segrega 98.3 0.023 4.9E-07 68.7 56.7 91 386-476 742-837 (1163)
19 PF01576 Myosin_tail_1: Myosin 98.3 1.4E-07 3E-12 109.6 0.0 360 69-477 39-415 (859)
20 KOG4674 Uncharacterized conser 98.1 0.073 1.6E-06 66.9 48.4 97 382-478 1244-1346(1822)
21 PF01576 Myosin_tail_1: Myosin 98.0 1E-06 2.2E-11 102.5 0.0 377 151-560 240-638 (859)
22 TIGR00606 rad50 rad50. This fa 98.0 0.091 2E-06 64.4 54.5 44 306-354 682-725 (1311)
23 PF15070 GOLGA2L5: Putative go 97.9 0.012 2.5E-07 67.4 29.0 252 255-549 25-315 (617)
24 PRK03918 chromosome segregatio 97.7 0.17 3.7E-06 58.6 53.3 40 79-118 189-228 (880)
25 KOG0971 Microtubule-associated 97.7 0.24 5.3E-06 58.9 42.6 56 175-230 255-310 (1243)
26 PF05557 MAD: Mitotic checkpoi 97.7 1.4E-05 3E-10 91.1 1.2 84 383-468 352-435 (722)
27 PF09787 Golgin_A5: Golgin sub 97.5 0.25 5.3E-06 55.2 34.0 135 324-480 281-426 (511)
28 KOG0977 Nuclear envelope prote 97.4 0.11 2.5E-06 58.8 26.9 41 437-477 294-334 (546)
29 PF00038 Filament: Intermediat 97.4 0.23 5.1E-06 50.9 30.9 94 386-479 207-302 (312)
30 PF00038 Filament: Intermediat 97.3 0.26 5.6E-06 50.6 32.6 89 241-355 198-286 (312)
31 KOG0977 Nuclear envelope prote 97.3 0.15 3.3E-06 57.9 26.2 89 386-479 294-382 (546)
32 PF05667 DUF812: Protein of un 97.2 0.24 5.3E-06 56.7 27.3 185 234-453 325-512 (594)
33 PF12128 DUF3584: Protein of u 97.1 1.2 2.6E-05 54.6 53.2 28 329-356 647-674 (1201)
34 PRK11637 AmiB activator; Provi 97.1 0.63 1.4E-05 50.5 27.7 83 177-259 154-240 (428)
35 PF13514 AAA_27: AAA domain 97.1 1.3 2.9E-05 53.7 46.9 110 513-622 940-1084(1111)
36 PF12128 DUF3584: Protein of u 97.0 1.6 3.5E-05 53.6 54.1 190 102-295 311-533 (1201)
37 KOG0994 Extracellular matrix g 96.9 1.9 4.1E-05 53.0 35.0 96 204-299 1512-1610(1758)
38 PRK11637 AmiB activator; Provi 96.8 0.39 8.4E-06 52.1 23.1 82 384-477 169-250 (428)
39 PHA02562 46 endonuclease subun 96.6 1.1 2.4E-05 49.3 25.1 49 245-293 234-282 (562)
40 PF12718 Tropomyosin_1: Tropom 96.5 0.043 9.3E-07 52.1 12.1 112 446-558 21-132 (143)
41 PF05557 MAD: Mitotic checkpoi 96.4 0.015 3.2E-07 66.9 10.1 84 253-352 344-427 (722)
42 KOG0963 Transcription factor/C 96.4 2.8 6E-05 48.6 36.2 253 173-477 119-400 (629)
43 KOG0933 Structural maintenance 96.3 4.1 8.9E-05 49.6 33.3 183 263-466 738-940 (1174)
44 PHA02562 46 endonuclease subun 96.3 1.5 3.3E-05 48.2 24.3 33 445-477 336-368 (562)
45 PF07888 CALCOCO1: Calcium bin 96.2 3.4 7.4E-05 47.4 40.8 135 385-552 322-456 (546)
46 KOG0999 Microtubule-associated 95.9 1.7 3.7E-05 49.9 22.4 176 250-477 6-187 (772)
47 PF09726 Macoilin: Transmembra 95.9 2.3 4.9E-05 49.9 24.0 108 379-548 543-650 (697)
48 PF00261 Tropomyosin: Tropomyo 95.8 2.5 5.4E-05 42.8 23.4 97 378-476 117-213 (237)
49 PRK04863 mukB cell division pr 95.7 9.3 0.0002 48.6 35.2 270 170-474 839-1116(1486)
50 PRK01156 chromosome segregatio 95.6 6.7 0.00014 46.3 54.7 23 326-348 471-493 (895)
51 KOG4643 Uncharacterized coiled 95.6 8.1 0.00017 47.2 40.7 83 218-300 258-342 (1195)
52 TIGR02680 conserved hypothetic 95.4 8.1 0.00017 48.5 27.8 39 67-105 740-778 (1353)
53 PF00261 Tropomyosin: Tropomyo 95.3 3.8 8.3E-05 41.5 26.2 30 332-361 93-122 (237)
54 PRK04863 mukB cell division pr 95.3 13 0.00028 47.4 38.1 180 368-562 419-614 (1486)
55 KOG0612 Rho-associated, coiled 95.2 12 0.00026 46.6 38.3 34 197-230 568-604 (1317)
56 PF04849 HAP1_N: HAP1 N-termin 95.1 4 8.7E-05 43.8 20.7 209 241-462 72-299 (306)
57 PF09726 Macoilin: Transmembra 94.8 11 0.00024 44.5 31.1 24 325-348 630-653 (697)
58 PF09730 BicD: Microtubule-ass 94.7 5.4 0.00012 47.2 22.4 193 68-276 252-457 (717)
59 KOG0996 Structural maintenance 94.7 16 0.00034 45.5 48.5 167 385-551 824-1001(1293)
60 PF05483 SCP-1: Synaptonemal c 94.7 12 0.00026 44.2 51.0 146 78-224 256-426 (786)
61 PRK01156 chromosome segregatio 94.6 13 0.00027 44.1 52.9 26 324-349 476-501 (895)
62 KOG0996 Structural maintenance 94.6 17 0.00037 45.3 49.6 45 489-534 981-1026(1293)
63 KOG4673 Transcription factor T 94.3 15 0.00032 43.6 32.2 212 198-477 404-622 (961)
64 PF13851 GAS: Growth-arrest sp 94.3 0.96 2.1E-05 45.2 13.2 111 376-488 15-128 (201)
65 PF05622 HOOK: HOOK protein; 94.3 0.012 2.7E-07 67.5 0.0 50 244-293 376-425 (713)
66 PF08317 Spc7: Spc7 kinetochor 94.2 8.9 0.00019 40.7 23.3 83 253-354 157-239 (325)
67 KOG0999 Microtubule-associated 94.1 8.9 0.00019 44.4 21.4 106 327-457 110-219 (772)
68 PRK04778 septation ring format 94.1 13 0.00029 42.3 40.8 442 70-584 80-524 (569)
69 COG4942 Membrane-bound metallo 94.1 12 0.00027 41.8 24.5 185 70-274 53-246 (420)
70 PF05622 HOOK: HOOK protein; 94.0 0.015 3.2E-07 66.9 0.0 30 444-473 620-649 (713)
71 COG1579 Zn-ribbon protein, pos 93.7 10 0.00022 39.6 22.2 114 172-297 7-120 (239)
72 KOG4643 Uncharacterized coiled 93.5 25 0.00053 43.4 33.6 128 170-297 179-311 (1195)
73 COG1579 Zn-ribbon protein, pos 93.5 1.9 4.2E-05 44.7 14.0 140 329-477 29-173 (239)
74 PRK09039 hypothetical protein; 93.2 14 0.0003 39.9 20.4 77 202-292 122-199 (343)
75 KOG4673 Transcription factor T 93.2 23 0.00051 42.1 38.3 54 335-388 609-662 (961)
76 KOG0971 Microtubule-associated 93.0 28 0.00061 42.6 41.5 103 71-173 226-354 (1243)
77 KOG0964 Structural maintenance 92.9 30 0.00065 42.6 30.9 286 204-545 188-492 (1200)
78 PF07111 HCR: Alpha helical co 92.9 25 0.00055 41.7 48.5 154 325-478 339-567 (739)
79 PRK09039 hypothetical protein; 92.8 13 0.00029 40.0 19.6 28 226-253 160-187 (343)
80 PF09787 Golgin_A5: Golgin sub 92.8 20 0.00044 40.4 29.4 106 325-457 275-380 (511)
81 TIGR03185 DNA_S_dndD DNA sulfu 92.7 23 0.0005 40.9 34.2 39 151-189 273-314 (650)
82 TIGR01005 eps_transp_fam exopo 92.6 9.3 0.0002 44.4 19.4 194 335-545 198-398 (754)
83 PF05911 DUF869: Plant protein 92.6 13 0.00029 44.4 20.7 113 402-549 92-205 (769)
84 TIGR03185 DNA_S_dndD DNA sulfu 91.9 29 0.00063 40.1 29.9 43 435-477 394-438 (650)
85 PF09730 BicD: Microtubule-ass 91.6 36 0.00079 40.6 37.6 94 329-422 364-460 (717)
86 PF13514 AAA_27: AAA domain 91.4 43 0.00093 41.2 47.8 65 499-564 896-966 (1111)
87 KOG0995 Centromere-associated 91.3 34 0.00074 39.8 35.7 70 336-405 458-534 (581)
88 PF10473 CENP-F_leu_zip: Leuci 91.1 7.8 0.00017 37.4 14.0 107 328-468 7-116 (140)
89 KOG0612 Rho-associated, coiled 91.0 53 0.0011 41.4 37.4 19 550-568 912-930 (1317)
90 COG4942 Membrane-bound metallo 90.7 33 0.00072 38.6 29.8 40 332-371 88-127 (420)
91 COG0419 SbcC ATPase involved i 89.9 52 0.0011 39.6 56.0 22 102-123 230-251 (908)
92 KOG0933 Structural maintenance 89.9 60 0.0013 40.3 46.7 149 332-482 678-837 (1174)
93 PRK11281 hypothetical protein; 89.6 66 0.0014 40.3 28.4 28 326-353 194-221 (1113)
94 KOG1029 Endocytic adaptor prot 89.5 58 0.0013 39.6 28.3 128 326-478 439-574 (1118)
95 PLN03188 kinesin-12 family pro 89.5 41 0.00088 42.5 21.1 155 216-426 1064-1235(1320)
96 PF04156 IncA: IncA protein; 88.9 13 0.00028 35.8 13.7 23 70-92 82-104 (191)
97 KOG1029 Endocytic adaptor prot 88.8 65 0.0014 39.2 32.6 71 332-406 480-553 (1118)
98 TIGR01005 eps_transp_fam exopo 88.3 58 0.0013 38.0 21.7 81 217-297 288-369 (754)
99 PF08317 Spc7: Spc7 kinetochor 88.1 19 0.00041 38.3 15.5 82 388-477 173-254 (325)
100 PRK10246 exonuclease subunit S 87.9 78 0.0017 39.0 51.9 101 364-476 707-807 (1047)
101 PF05667 DUF812: Protein of un 87.2 67 0.0015 37.5 20.2 75 329-426 445-522 (594)
102 PF06008 Laminin_I: Laminin Do 86.9 39 0.00085 34.6 27.5 219 219-477 26-244 (264)
103 PF07798 DUF1640: Protein of u 86.8 32 0.0007 33.5 16.0 26 214-239 3-28 (177)
104 TIGR01843 type_I_hlyD type I s 86.6 31 0.00067 36.3 16.0 66 155-220 204-270 (423)
105 KOG0994 Extracellular matrix g 86.6 1E+02 0.0022 39.1 43.0 76 69-144 1194-1272(1758)
106 PF08614 ATG16: Autophagy prot 86.4 3.1 6.8E-05 40.9 8.0 66 384-458 119-184 (194)
107 PF10473 CENP-F_leu_zip: Leuci 86.0 35 0.00075 33.1 16.1 78 386-479 8-92 (140)
108 PF05483 SCP-1: Synaptonemal c 85.9 87 0.0019 37.5 50.6 94 384-477 509-625 (786)
109 PF12718 Tropomyosin_1: Tropom 85.6 35 0.00075 32.7 16.5 121 395-546 21-141 (143)
110 COG1842 PspA Phage shock prote 85.5 40 0.00087 34.7 15.6 143 217-385 31-181 (225)
111 smart00787 Spc7 Spc7 kinetocho 85.4 57 0.0012 35.1 23.5 84 253-355 152-235 (312)
112 PRK10884 SH3 domain-containing 84.8 12 0.00027 37.9 11.4 60 69-131 93-152 (206)
113 TIGR03017 EpsF chain length de 84.7 44 0.00096 36.1 16.4 124 333-477 173-299 (444)
114 KOG0250 DNA repair protein RAD 84.7 1.2E+02 0.0025 38.0 29.9 29 327-355 326-354 (1074)
115 KOG2991 Splicing regulator [RN 84.3 64 0.0014 34.7 20.9 97 346-478 214-310 (330)
116 PF06818 Fez1: Fez1; InterPro 84.0 54 0.0012 33.6 15.6 94 173-276 8-104 (202)
117 PF11559 ADIP: Afadin- and alp 82.9 42 0.00091 31.6 13.7 30 375-404 120-149 (151)
118 TIGR01000 bacteriocin_acc bact 82.4 85 0.0018 34.7 18.3 35 509-550 287-321 (457)
119 KOG0976 Rho/Rac1-interacting s 82.0 1.4E+02 0.003 36.8 43.0 28 387-414 416-443 (1265)
120 PF12325 TMF_TATA_bd: TATA ele 81.8 29 0.00064 32.7 11.9 24 332-355 62-85 (120)
121 KOG0962 DNA repair protein RAD 81.0 1.7E+02 0.0038 37.3 42.2 120 222-355 787-909 (1294)
122 KOG0976 Rho/Rac1-interacting s 81.0 1.5E+02 0.0032 36.5 41.0 192 199-402 255-470 (1265)
123 PF12325 TMF_TATA_bd: TATA ele 80.8 36 0.00078 32.1 12.1 93 71-189 18-110 (120)
124 PF10186 Atg14: UV radiation r 80.8 64 0.0014 32.5 14.9 28 403-430 21-48 (302)
125 PF15619 Lebercilin: Ciliary p 79.2 75 0.0016 32.1 22.3 126 251-411 67-194 (194)
126 KOG0963 Transcription factor/C 78.8 1.5E+02 0.0032 35.2 25.8 191 101-300 193-438 (629)
127 PF12777 MT: Microtubule-bindi 78.6 37 0.00081 36.3 13.0 121 438-565 4-131 (344)
128 KOG0288 WD40 repeat protein Ti 78.5 31 0.00067 38.9 12.5 64 398-477 9-72 (459)
129 KOG4807 F-actin binding protei 78.4 1.3E+02 0.0028 34.3 19.0 72 450-538 509-583 (593)
130 PF15290 Syntaphilin: Golgi-lo 76.9 62 0.0014 34.9 13.7 29 162-190 110-139 (305)
131 TIGR03007 pepcterm_ChnLen poly 76.7 1.3E+02 0.0027 33.3 17.4 21 265-285 354-374 (498)
132 PF08614 ATG16: Autophagy prot 76.4 8.7 0.00019 37.8 7.1 42 384-425 91-132 (194)
133 TIGR00634 recN DNA repair prot 75.2 1.6E+02 0.0034 33.7 24.8 196 71-282 156-376 (563)
134 PF07798 DUF1640: Protein of u 74.3 90 0.002 30.5 14.1 82 384-479 76-157 (177)
135 PF09755 DUF2046: Uncharacteri 74.1 1.4E+02 0.003 32.6 22.7 229 253-538 21-254 (310)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.0 77 0.0017 29.6 12.9 119 387-528 2-120 (132)
137 PF06548 Kinesin-related: Kine 73.8 1.7E+02 0.0038 33.5 20.2 206 165-426 219-465 (488)
138 PF10498 IFT57: Intra-flagella 73.7 68 0.0015 35.2 13.5 110 71-185 236-345 (359)
139 PF06160 EzrA: Septation ring 73.5 1.8E+02 0.0039 33.5 43.9 411 70-547 76-492 (560)
140 TIGR02977 phageshock_pspA phag 73.1 1.1E+02 0.0023 30.9 18.3 40 220-259 34-73 (219)
141 PRK10476 multidrug resistance 72.9 81 0.0017 33.2 13.5 47 241-287 124-173 (346)
142 TIGR03007 pepcterm_ChnLen poly 72.6 1.6E+02 0.0034 32.6 18.7 22 103-124 167-188 (498)
143 TIGR01843 type_I_hlyD type I s 72.3 1.3E+02 0.0029 31.6 19.2 27 522-548 248-274 (423)
144 COG0419 SbcC ATPase involved i 72.1 2.3E+02 0.005 34.3 54.6 81 144-224 358-438 (908)
145 PF08826 DMPK_coil: DMPK coile 71.6 31 0.00068 29.2 8.1 44 80-130 15-58 (61)
146 PF15070 GOLGA2L5: Putative go 71.0 2.2E+02 0.0048 33.6 38.7 116 69-189 50-174 (617)
147 PRK04778 septation ring format 70.3 2.1E+02 0.0045 32.9 42.5 66 71-143 107-172 (569)
148 PF11570 E2R135: Coiled-coil r 69.7 1.1E+02 0.0025 29.7 12.9 90 242-355 12-101 (136)
149 PF10168 Nup88: Nuclear pore c 69.5 84 0.0018 37.5 14.0 15 149-163 634-648 (717)
150 PF00769 ERM: Ezrin/radixin/mo 68.9 1.5E+02 0.0033 30.8 15.3 25 71-95 7-31 (246)
151 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.7 1E+02 0.0022 28.8 13.8 75 384-477 55-129 (132)
152 TIGR02680 conserved hypothetic 68.2 3.5E+02 0.0075 34.7 33.4 96 201-297 295-392 (1353)
153 PRK10698 phage shock protein P 67.7 1.5E+02 0.0032 30.3 17.7 57 328-384 124-180 (222)
154 PF12761 End3: Actin cytoskele 66.8 27 0.00059 35.6 8.1 95 52-146 85-195 (195)
155 KOG0993 Rab5 GTPase effector R 66.7 1.9E+02 0.004 33.1 15.0 48 192-239 27-74 (542)
156 PF10146 zf-C4H2: Zinc finger- 66.2 1.3E+02 0.0028 31.3 13.0 72 254-348 34-106 (230)
157 TIGR02977 phageshock_pspA phag 65.1 1.6E+02 0.0035 29.7 19.6 147 74-230 29-179 (219)
158 PF05911 DUF869: Plant protein 65.0 3.3E+02 0.007 33.2 28.4 150 101-274 21-170 (769)
159 PRK11281 hypothetical protein; 64.9 3.8E+02 0.0082 34.0 37.2 49 353-405 289-337 (1113)
160 PF05335 DUF745: Protein of un 64.1 1.7E+02 0.0037 29.7 16.7 121 177-297 40-168 (188)
161 PRK10361 DNA recombination pro 64.0 2.7E+02 0.0059 32.0 19.2 22 503-524 377-398 (475)
162 PF08826 DMPK_coil: DMPK coile 64.0 23 0.0005 30.0 5.9 45 510-554 15-59 (61)
163 KOG0979 Structural maintenance 62.4 4.1E+02 0.0088 33.5 18.6 168 369-547 161-345 (1072)
164 KOG4809 Rab6 GTPase-interactin 62.2 3.3E+02 0.0071 32.3 22.3 106 172-282 328-433 (654)
165 KOG0250 DNA repair protein RAD 62.0 4.2E+02 0.0091 33.5 48.5 44 72-115 210-253 (1074)
166 COG5185 HEC1 Protein involved 60.7 3.3E+02 0.0071 31.8 23.5 44 377-421 372-415 (622)
167 KOG0995 Centromere-associated 60.6 3.4E+02 0.0075 32.0 29.5 76 325-420 302-378 (581)
168 PF04111 APG6: Autophagy prote 60.6 61 0.0013 34.7 9.8 87 383-478 45-131 (314)
169 COG2433 Uncharacterized conser 59.4 44 0.00095 39.3 9.0 39 435-473 470-508 (652)
170 PRK10884 SH3 domain-containing 59.1 50 0.0011 33.6 8.4 37 436-472 122-158 (206)
171 PF15619 Lebercilin: Ciliary p 58.9 2.1E+02 0.0045 29.0 20.6 33 430-462 162-194 (194)
172 PF04012 PspA_IM30: PspA/IM30 58.5 2E+02 0.0043 28.6 19.0 51 72-122 26-76 (221)
173 PRK12704 phosphodiesterase; Pr 58.1 3.5E+02 0.0075 31.2 17.6 43 535-578 182-231 (520)
174 KOG4403 Cell surface glycoprot 57.5 1.5E+02 0.0033 34.0 12.3 20 335-354 306-325 (575)
175 KOG1962 B-cell receptor-associ 57.4 1E+02 0.0022 32.1 10.3 40 438-477 171-210 (216)
176 COG2433 Uncharacterized conser 56.6 1.2E+02 0.0027 35.9 11.8 55 512-566 473-545 (652)
177 KOG0946 ER-Golgi vesicle-tethe 56.5 4.8E+02 0.01 32.4 22.7 71 327-399 754-824 (970)
178 KOG1937 Uncharacterized conser 56.2 3.8E+02 0.0082 31.1 28.4 250 118-426 244-519 (521)
179 PF05266 DUF724: Protein of un 56.1 1.3E+02 0.0029 30.3 10.8 17 332-348 80-96 (190)
180 KOG4360 Uncharacterized coiled 55.5 4.1E+02 0.0088 31.3 18.7 131 327-465 162-301 (596)
181 PF15290 Syntaphilin: Golgi-lo 55.1 52 0.0011 35.5 8.1 82 267-366 69-159 (305)
182 KOG0962 DNA repair protein RAD 55.1 5.9E+02 0.013 33.0 31.4 95 69-163 740-849 (1294)
183 PF04102 SlyX: SlyX; InterPro 54.1 43 0.00093 28.3 6.0 49 69-124 4-52 (69)
184 PF04849 HAP1_N: HAP1 N-termin 53.8 3.3E+02 0.0072 29.8 19.8 81 204-284 161-245 (306)
185 PF13094 CENP-Q: CENP-Q, a CEN 52.7 1E+02 0.0022 29.4 9.1 63 55-117 4-68 (160)
186 PF07795 DUF1635: Protein of u 51.9 39 0.00085 34.9 6.4 46 72-117 15-60 (214)
187 PF03148 Tektin: Tektin family 51.8 3.6E+02 0.0079 29.6 32.9 144 329-477 213-362 (384)
188 PF10481 CENP-F_N: Cenp-F N-te 50.6 1.7E+02 0.0037 31.7 10.9 102 370-480 25-129 (307)
189 KOG0978 E3 ubiquitin ligase in 50.4 5.4E+02 0.012 31.2 43.9 42 494-535 554-595 (698)
190 PF06810 Phage_GP20: Phage min 50.1 1.4E+02 0.003 29.1 9.5 42 128-169 50-91 (155)
191 PF13870 DUF4201: Domain of un 50.0 2.5E+02 0.0054 27.2 15.8 85 201-287 89-173 (177)
192 PRK10698 phage shock protein P 50.0 3E+02 0.0065 28.1 18.9 149 77-236 32-184 (222)
193 TIGR03752 conj_TIGR03752 integ 49.7 76 0.0017 36.3 8.7 36 445-480 58-93 (472)
194 PRK12704 phosphodiesterase; Pr 49.5 4.1E+02 0.0088 30.7 14.5 29 447-475 111-139 (520)
195 PF04111 APG6: Autophagy prote 49.4 2.3E+02 0.005 30.5 11.9 43 435-477 46-88 (314)
196 PF08172 CASP_C: CASP C termin 49.4 1.1E+02 0.0025 31.9 9.4 44 325-379 94-137 (248)
197 PRK11546 zraP zinc resistance 49.3 64 0.0014 31.5 7.1 65 384-464 50-114 (143)
198 TIGR01010 BexC_CtrB_KpsE polys 48.9 3.1E+02 0.0068 29.2 12.9 91 387-477 169-259 (362)
199 PF15294 Leu_zip: Leucine zipp 48.6 3.8E+02 0.0083 28.9 14.4 177 317-535 46-244 (278)
200 PRK00846 hypothetical protein; 48.4 72 0.0016 28.2 6.6 49 69-124 13-61 (77)
201 PRK00736 hypothetical protein; 47.8 77 0.0017 27.0 6.6 49 69-124 5-53 (68)
202 KOG0980 Actin-binding protein 46.9 6.8E+02 0.015 31.3 26.0 58 176-233 463-524 (980)
203 KOG2418 Microtubule-associated 46.7 34 0.00073 38.1 5.3 38 54-99 267-304 (448)
204 TIGR03319 YmdA_YtgF conserved 46.6 4.1E+02 0.009 30.6 14.0 43 535-578 176-225 (514)
205 TIGR03319 YmdA_YtgF conserved 46.6 5.1E+02 0.011 29.9 17.8 25 448-472 106-130 (514)
206 KOG1853 LIS1-interacting prote 46.2 4.2E+02 0.0091 28.8 13.0 84 339-426 53-157 (333)
207 TIGR00634 recN DNA repair prot 46.1 5.1E+02 0.011 29.7 21.6 74 327-404 212-289 (563)
208 KOG4809 Rab6 GTPase-interactin 45.3 6E+02 0.013 30.3 21.8 87 213-299 327-413 (654)
209 smart00787 Spc7 Spc7 kinetocho 45.3 4.3E+02 0.0093 28.6 18.3 29 132-160 182-210 (312)
210 KOG1899 LAR transmembrane tyro 45.3 6.4E+02 0.014 30.6 16.4 47 522-570 276-322 (861)
211 PRK00295 hypothetical protein; 44.7 1E+02 0.0022 26.3 6.8 49 69-124 5-53 (68)
212 PF10498 IFT57: Intra-flagella 44.3 4.8E+02 0.01 28.9 16.5 40 150-189 216-255 (359)
213 PF13851 GAS: Growth-arrest sp 44.3 3.5E+02 0.0076 27.3 19.0 111 167-295 19-129 (201)
214 PRK04406 hypothetical protein; 44.3 94 0.002 27.1 6.7 48 69-123 11-58 (75)
215 PRK02119 hypothetical protein; 44.0 89 0.0019 27.0 6.4 49 69-124 9-57 (73)
216 KOG0946 ER-Golgi vesicle-tethe 43.8 7.4E+02 0.016 30.9 23.8 20 208-227 756-775 (970)
217 PF00769 ERM: Ezrin/radixin/mo 43.4 4E+02 0.0087 27.7 13.4 108 263-404 16-126 (246)
218 PF14662 CCDC155: Coiled-coil 43.0 4E+02 0.0086 27.5 22.2 105 169-294 5-109 (193)
219 PF09789 DUF2353: Uncharacteri 42.7 5E+02 0.011 28.6 18.8 13 465-477 194-206 (319)
220 PRK03598 putative efflux pump 42.4 4.2E+02 0.0092 27.7 13.9 39 255-293 134-172 (331)
221 PF06548 Kinesin-related: Kine 42.1 6.1E+02 0.013 29.4 26.3 142 326-478 311-466 (488)
222 KOG4593 Mitotic checkpoint pro 42.1 7.2E+02 0.016 30.2 46.3 53 70-122 120-172 (716)
223 PRK04325 hypothetical protein; 41.3 1.1E+02 0.0024 26.4 6.7 49 69-124 9-57 (74)
224 PF12329 TMF_DNA_bd: TATA elem 41.0 1.8E+02 0.004 25.1 7.9 18 249-266 9-26 (74)
225 COG5185 HEC1 Protein involved 40.8 6.6E+02 0.014 29.5 31.2 89 386-479 485-577 (622)
226 KOG0982 Centrosomal protein Nu 40.1 6.5E+02 0.014 29.2 16.3 192 325-549 216-418 (502)
227 PF05010 TACC: Transforming ac 40.0 4.4E+02 0.0095 27.2 22.6 115 266-403 69-183 (207)
228 PF11932 DUF3450: Protein of u 39.9 3.3E+02 0.0072 27.8 11.0 77 70-146 43-119 (251)
229 KOG0239 Kinesin (KAR3 subfamil 39.8 6.3E+02 0.014 30.3 14.5 136 229-403 174-315 (670)
230 PRK10476 multidrug resistance 39.4 4.8E+02 0.01 27.5 15.1 22 73-94 83-104 (346)
231 PF04156 IncA: IncA protein; 39.4 3.6E+02 0.0078 26.0 15.5 46 79-131 77-122 (191)
232 PRK10246 exonuclease subunit S 39.1 8.6E+02 0.019 30.3 54.3 50 72-122 226-275 (1047)
233 PRK02793 phi X174 lysis protei 38.5 1.3E+02 0.0029 25.8 6.7 48 69-123 8-55 (72)
234 PLN03229 acetyl-coenzyme A car 38.5 3.9E+02 0.0084 32.6 12.4 13 71-83 103-115 (762)
235 PF04977 DivIC: Septum formati 38.3 77 0.0017 26.0 5.1 32 447-478 18-49 (80)
236 KOG4074 Leucine zipper nuclear 37.9 1.4E+02 0.0031 32.8 8.2 17 540-556 204-220 (383)
237 PF07989 Microtub_assoc: Micro 37.8 1.3E+02 0.0028 26.2 6.5 21 406-426 4-24 (75)
238 KOG1962 B-cell receptor-associ 37.7 1E+02 0.0022 32.0 6.9 58 414-477 132-189 (216)
239 PRK15178 Vi polysaccharide exp 37.2 6.8E+02 0.015 28.6 15.9 72 433-511 315-388 (434)
240 PF02403 Seryl_tRNA_N: Seryl-t 36.6 3E+02 0.0066 24.3 9.2 74 256-356 26-99 (108)
241 KOG4360 Uncharacterized coiled 35.8 8.1E+02 0.017 29.0 15.7 42 373-414 260-301 (596)
242 PF08580 KAR9: Yeast cortical 35.8 8.5E+02 0.018 29.3 18.9 150 235-407 106-268 (683)
243 PF06428 Sec2p: GDP/GTP exchan 35.7 39 0.00084 31.0 3.2 77 384-482 11-87 (100)
244 KOG0972 Huntingtin interacting 35.5 5.8E+02 0.013 28.3 12.1 102 82-186 219-326 (384)
245 PF05529 Bap31: B-cell recepto 35.3 1.5E+02 0.0032 29.0 7.4 36 437-472 152-187 (192)
246 PF04201 TPD52: Tumour protein 35.3 2E+02 0.0043 28.9 8.1 47 434-480 31-82 (162)
247 PF07106 TBPIP: Tat binding pr 35.3 2.1E+02 0.0046 27.5 8.3 17 389-405 73-89 (169)
248 KOG0980 Actin-binding protein 35.2 1E+03 0.022 29.9 36.3 218 72-347 329-549 (980)
249 KOG2991 Splicing regulator [RN 35.0 5.2E+02 0.011 28.1 11.5 78 386-470 182-274 (330)
250 PF06785 UPF0242: Uncharacteri 34.1 3.7E+02 0.0081 30.1 10.6 70 408-477 74-151 (401)
251 PF12001 DUF3496: Domain of un 34.1 2.1E+02 0.0045 27.1 7.6 54 69-122 7-68 (111)
252 TIGR00998 8a0101 efflux pump m 34.1 5.5E+02 0.012 26.6 15.7 52 71-122 75-126 (334)
253 PF10234 Cluap1: Clusterin-ass 33.9 1.9E+02 0.0042 30.9 8.3 59 228-286 159-217 (267)
254 PF06810 Phage_GP20: Phage min 33.7 4.6E+02 0.01 25.6 10.5 28 335-362 55-82 (155)
255 KOG0978 E3 ubiquitin ligase in 33.7 9.5E+02 0.021 29.2 45.1 188 332-547 448-641 (698)
256 COG1340 Uncharacterized archae 33.5 6.7E+02 0.015 27.4 29.2 208 71-297 36-252 (294)
257 PF07106 TBPIP: Tat binding pr 33.5 2.6E+02 0.0057 26.8 8.6 39 438-476 71-109 (169)
258 PF06156 DUF972: Protein of un 33.1 1.1E+02 0.0024 28.3 5.7 43 435-477 11-53 (107)
259 PRK00888 ftsB cell division pr 32.4 1E+02 0.0022 28.2 5.4 52 447-512 28-79 (105)
260 PF14182 YgaB: YgaB-like prote 32.2 3.8E+02 0.0083 24.2 8.8 61 255-354 3-63 (79)
261 PF05276 SH3BP5: SH3 domain-bi 31.9 6.3E+02 0.014 26.6 23.6 77 84-169 15-96 (239)
262 KOG0249 LAR-interacting protei 31.4 1.1E+03 0.024 29.2 16.5 33 522-554 225-257 (916)
263 PLN03188 kinesin-12 family pro 31.1 1.3E+03 0.029 30.1 31.2 141 325-478 1080-1236(1320)
264 cd07666 BAR_SNX7 The Bin/Amphi 30.9 5.3E+02 0.011 27.2 10.8 43 79-121 159-201 (243)
265 PF05278 PEARLI-4: Arabidopsis 30.7 7.2E+02 0.016 26.9 15.2 128 162-297 123-252 (269)
266 PF11172 DUF2959: Protein of u 30.6 6.3E+02 0.014 26.2 21.7 78 74-162 26-111 (201)
267 PF04880 NUDE_C: NUDE protein, 30.5 31 0.00066 34.3 1.8 52 403-460 1-52 (166)
268 TIGR02231 conserved hypothetic 30.4 5.4E+02 0.012 29.1 11.6 31 447-477 72-102 (525)
269 PF05529 Bap31: B-cell recepto 30.4 2.7E+02 0.0058 27.3 8.2 62 70-131 119-188 (192)
270 KOG0288 WD40 repeat protein Ti 30.3 3.7E+02 0.008 30.8 10.0 43 384-426 30-72 (459)
271 PF12795 MscS_porin: Mechanose 30.3 6E+02 0.013 25.8 21.0 49 215-264 16-64 (240)
272 TIGR00998 8a0101 efflux pump m 29.5 6.5E+02 0.014 26.0 13.7 32 255-286 135-166 (334)
273 PRK13729 conjugal transfer pil 29.5 90 0.002 35.8 5.4 45 433-477 77-121 (475)
274 PF08647 BRE1: BRE1 E3 ubiquit 29.5 3.9E+02 0.0085 23.9 8.4 46 508-553 26-71 (96)
275 PF14662 CCDC155: Coiled-coil 29.4 6.5E+02 0.014 26.0 22.0 46 71-116 10-55 (193)
276 PF11365 DUF3166: Protein of u 28.8 2.3E+02 0.005 26.2 6.9 78 383-460 3-90 (96)
277 PF06120 Phage_HK97_TLTM: Tail 28.7 8E+02 0.017 26.8 12.6 97 431-534 66-162 (301)
278 PF05384 DegS: Sensor protein 28.5 5.9E+02 0.013 25.3 15.7 31 325-355 85-115 (159)
279 COG5302 Post-segregation antit 27.9 82 0.0018 28.3 3.7 46 531-584 32-78 (80)
280 PF04645 DUF603: Protein of un 27.3 2.1E+02 0.0046 29.1 6.9 56 408-463 104-162 (181)
281 PF09755 DUF2046: Uncharacteri 27.3 8.7E+02 0.019 26.8 34.3 34 325-358 223-256 (310)
282 PF06156 DUF972: Protein of un 27.3 1.5E+02 0.0033 27.5 5.5 43 435-477 4-46 (107)
283 PF12329 TMF_DNA_bd: TATA elem 26.4 2.8E+02 0.0061 24.0 6.7 31 435-465 36-66 (74)
284 PF07139 DUF1387: Protein of u 26.2 4.1E+02 0.0089 29.1 9.3 104 352-477 170-283 (302)
285 PF12795 MscS_porin: Mechanose 26.1 7.1E+02 0.015 25.3 21.8 89 203-295 113-207 (240)
286 TIGR00999 8a0102 Membrane Fusi 25.4 2.6E+02 0.0057 27.6 7.3 56 71-126 18-76 (265)
287 KOG0249 LAR-interacting protei 25.2 1.3E+03 0.028 28.5 13.6 56 241-297 94-149 (916)
288 PF01166 TSC22: TSC-22/dip/bun 25.2 82 0.0018 26.8 3.1 33 445-477 13-45 (59)
289 PF04728 LPP: Lipoprotein leuc 25.1 3.7E+02 0.0081 22.7 6.9 30 440-476 4-33 (56)
290 PF05335 DUF745: Protein of un 25.1 7.4E+02 0.016 25.2 14.8 80 218-297 61-140 (188)
291 KOG0972 Huntingtin interacting 25.1 5.1E+02 0.011 28.7 9.7 102 71-185 243-352 (384)
292 PF00418 Tubulin-binding: Tau 25.1 41 0.00088 25.3 1.2 18 571-588 12-30 (31)
293 TIGR01010 BexC_CtrB_KpsE polys 24.6 8.8E+02 0.019 25.9 17.0 31 100-130 173-203 (362)
294 PF11365 DUF3166: Protein of u 23.3 6E+02 0.013 23.5 9.8 82 241-348 4-86 (96)
295 PRK13169 DNA replication intia 23.2 2.4E+02 0.0053 26.4 6.1 44 435-478 11-54 (110)
296 PF02183 HALZ: Homeobox associ 23.0 1.4E+02 0.0031 23.8 3.9 34 444-477 3-36 (45)
297 PRK03598 putative efflux pump 22.8 8.9E+02 0.019 25.3 14.5 17 271-287 112-128 (331)
298 PF02403 Seryl_tRNA_N: Seryl-t 22.6 5.4E+02 0.012 22.8 8.6 61 212-273 28-88 (108)
299 PF05266 DUF724: Protein of un 22.6 8.1E+02 0.018 24.8 13.3 26 163-188 84-109 (190)
300 PF13870 DUF4201: Domain of un 22.5 7.1E+02 0.015 24.1 21.5 117 221-355 60-176 (177)
301 PF14282 FlxA: FlxA-like prote 22.5 3.8E+02 0.0082 24.5 7.1 54 68-124 18-71 (106)
302 COG2900 SlyX Uncharacterized p 22.4 2.2E+02 0.0047 25.3 5.2 56 69-131 8-63 (72)
303 PF10267 Tmemb_cc2: Predicted 22.3 1.2E+03 0.025 26.5 17.3 18 172-189 273-290 (395)
304 PF04380 BMFP: Membrane fusoge 22.1 5.3E+02 0.011 22.5 7.8 47 495-541 31-78 (79)
305 PRK08475 F0F1 ATP synthase sub 22.1 7.4E+02 0.016 24.1 13.2 44 74-117 51-94 (167)
306 PRK10869 recombination and rep 22.0 1.3E+03 0.028 26.8 26.1 66 213-281 302-370 (553)
307 PF14197 Cep57_CLD_2: Centroso 21.7 5.3E+02 0.011 22.2 8.2 50 73-122 2-51 (69)
308 PRK10929 putative mechanosensi 21.6 1.8E+03 0.039 28.4 31.7 298 76-378 58-390 (1109)
309 PRK15136 multidrug efflux syst 21.3 1.1E+03 0.024 25.8 13.6 122 72-215 95-216 (390)
310 KOG0804 Cytoplasmic Zn-finger 21.1 1.1E+03 0.024 27.4 11.7 42 384-425 371-412 (493)
311 PF10146 zf-C4H2: Zinc finger- 20.9 9.7E+02 0.021 25.0 14.1 103 170-279 6-109 (230)
312 PF06005 DUF904: Protein of un 20.8 5.6E+02 0.012 22.3 8.9 37 238-274 4-40 (72)
313 COG3883 Uncharacterized protei 20.7 1.1E+03 0.023 25.5 21.8 201 234-501 34-234 (265)
314 KOG4343 bZIP transcription fac 20.7 1.4E+02 0.003 35.1 4.7 41 442-482 298-338 (655)
315 PRK15178 Vi polysaccharide exp 20.4 1.3E+03 0.029 26.4 14.9 123 165-299 215-340 (434)
316 PF12711 Kinesin-relat_1: Kine 20.2 6.6E+02 0.014 22.8 8.2 61 329-402 22-84 (86)
317 PF04728 LPP: Lipoprotein leuc 20.2 3.9E+02 0.0084 22.6 6.1 37 71-114 12-48 (56)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.91 E-value=1.6e-19 Score=196.79 Aligned_cols=444 Identities=25% Similarity=0.311 Sum_probs=281.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHhhhhHHHHHHHHHH-
Q 006962 68 PSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE---SQKQLQELSASEEARAVELQK- 143 (623)
Q Consensus 68 ~~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLee---sQkQ~~e~Sa~e~sr~~Elqk- 143 (623)
+.|..+++.+|.++|+|+.++|+||..+|..|.++..+|+.+|+-+.+++.+|+. .+++...++.+.+||+.|+++
T Consensus 26 ~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~ 105 (522)
T PF05701_consen 26 LERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQG 105 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhh
Confidence 4788899999999999999999999999999999999999999999999999996 478999999999999999987
Q ss_pred HhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHH
Q 006962 144 VSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMK 223 (623)
Q Consensus 144 ~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lK 223 (623)
+.......|+.||+.++.||+.+++.|.++..||++|+.++.++.++++.|+++|++|..-.+.-...+.+--.-|..+|
T Consensus 106 ~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lk 185 (522)
T PF05701_consen 106 IAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALK 185 (522)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778999999999999999999999999999999999999999999999999999533322222222222222222
Q ss_pred HHhhHhhhhHH-----------HHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 006962 224 NQLRESKESET-----------QAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 292 (623)
Q Consensus 224 s~l~e~keSeA-----------qa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskL 292 (623)
-.+.....+.. +-...+..+...|+.+...++.|+.+. .....|...|+.+...+..|...+...
T Consensus 186 e~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~ 261 (522)
T PF05701_consen 186 ESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAA 261 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211111 111233555666777777787777776 445566667777666666654444333
Q ss_pred hhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHH
Q 006962 293 EADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQL 372 (623)
Q Consensus 293 q~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~ 372 (623)
...-.... . ...+....+...|.+.+.|+++.+..|..+..... +++..
T Consensus 262 ~~~~l~~~----------------~---~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~------~L~~~------ 310 (522)
T PF05701_consen 262 KESKLEEE----------------A---EAKEKSSELQSSLASAKKELEEAKKELEKAKEEAS------SLRAS------ 310 (522)
T ss_pred HHHHHhhh----------------H---HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH------
Confidence 32111000 0 00011111333344444444444444443322210 00000
Q ss_pred HHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhh-----hhhhhhhHHHHHHhhHHH
Q 006962 373 EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNL-----MCQRESQLNNDLRKLAQA 447 (623)
Q Consensus 373 e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~-----~~~ke~el~~~l~~~~~~ 447 (623)
. .-|..+|.+.+.++..|+.+.-......+++-.+=..++.+|.--. ....-..+...|..+..+
T Consensus 311 ----v------esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~E 380 (522)
T PF05701_consen 311 ----V------ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSE 380 (522)
T ss_pred ----H------HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHH
Confidence 0 0144555566666666666555555555555555555555553100 011224566666666666
Q ss_pred HHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHH--------------
Q 006962 448 VEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLME-------------- 513 (623)
Q Consensus 448 v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~e-------------- 513 (623)
....|......-.++..+..+.+..|..|...+. ....+.-++++||++|.-|+..+..+.+
T Consensus 381 ae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~----rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~ 456 (522)
T PF05701_consen 381 AEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEE----RLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSS 456 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCC
Confidence 6666666666666666666666666666653322 1223444567777777777766654322
Q ss_pred -------HHHH-----------hhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHH
Q 006962 514 -------EADK-----------SNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAA 560 (623)
Q Consensus 514 -------e~~~-----------s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaA 560 (623)
|... ++.|++-...|++++.+...+.-.=|.-+.-..++=|.|-+.|
T Consensus 457 ~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~A 521 (522)
T PF05701_consen 457 KVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEA 521 (522)
T ss_pred CeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2211 3446677777888888877776666666666677767666654
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.35 E-value=3.6e-08 Score=108.60 Aligned_cols=411 Identities=24% Similarity=0.275 Sum_probs=224.9
Q ss_pred hhhhHHHHHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHhh
Q 006962 71 ISELESQVSRLQEDLKKAK-------NQLSSSESWKQQAQQDAEDSKKQLLALS------------SKLQESQKQLQELS 131 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaK-------eQL~~sE~~K~~a~~eleEskkQl~e~S------------skLeesQkQ~~e~S 131 (623)
+...+....++-.||..+| -+|..+...+..|.++.+-++-++.++. .+|+-++.|+....
T Consensus 50 l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~ 129 (522)
T PF05701_consen 50 LEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAV 129 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 3444555556666665544 5676777778888888888888877774 56888999999999
Q ss_pred hhHHHHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---
Q 006962 132 ASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAA------LASALNELQQLKAQFEMVAESEAAQTKNAESAH--- 202 (623)
Q Consensus 132 a~e~sr~~Elqk~~q~~d~~wqsEleavq~qhs~Dsaa------L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~--- 202 (623)
+.+.+.-.||+++.++.+.+..--..+.++...+-+++ ...-..||.+||..|..+.-+-..+..+--...
T Consensus 130 ~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~ 209 (522)
T PF05701_consen 130 AELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAER 209 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887777777766555554 556667788888777776443333333322222
Q ss_pred -HHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHH---HHHHHHHHHHHHHHHhHh-HHHH---HHHhhhHHHHHHhhhHHH
Q 006962 203 -LELQSLKGNLIETISLMENMKNQLRESKESET---QAQALARETLLQLETAKL-SVEA---LRAEGMKAIEAYSSIASE 274 (623)
Q Consensus 203 -~ELe~lk~~laetl~lvE~lKs~l~e~keSeA---qa~aL~~E~~~QLE~aka-tve~---L~adg~Ka~e~~~sl~~e 274 (623)
......+..+.++-.-|+.|+..+...+.-+. .+...+..++.+|..... .++. ...........+.++..+
T Consensus 210 ~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~E 289 (522)
T PF05701_consen 210 EQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKE 289 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHH
Confidence 22223333333333444444444422222221 222223333333333322 1111 122222233334444455
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhh---------hhhhhhhhhHHHHHhhchhhHHHHHH
Q 006962 275 LERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKE---------NQDTMESKHLEEELSSLKSEVGQLRS 345 (623)
Q Consensus 275 Le~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~---------~~~~~e~~~Le~EL~s~ksEIeeLRs 345 (623)
|+..+..++.....++.|+....+...- ....+. ......+..|+.+|..++++++-++
T Consensus 290 Le~ak~~L~~~k~E~~~L~~~vesL~~E-----------Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~- 357 (522)
T PF05701_consen 290 LEEAKKELEKAKEEASSLRASVESLRSE-----------LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK- 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH-
Confidence 5555554444444444444322211100 000000 0000011124444444444443222
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhh
Q 006962 346 ALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 425 (623)
Q Consensus 346 aLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei 425 (623)
..+.+..+....++..+..+..-.+..|.+- .....++.+++.+++..|+.+-.-|..|+.+..+-+.-+---
T Consensus 358 ---~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea----~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasE 430 (522)
T PF05701_consen 358 ---AEEEKAKEAMSELPKALQQLSSEAEEAKKEA----EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASE 430 (522)
T ss_pred ---hhhcchhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333444444444444444444444332 233446678888888888888888888777655544222111
Q ss_pred hhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhH-----------HHHhhHHHhhHHHHHHhchhhccCCccchhhHHHH
Q 006962 426 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKE-----------TELQNISEENEMLKLEISKRELDTPNMNSNLAAEV 494 (623)
Q Consensus 426 ~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke-----------~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~ 494 (623)
. --++.+|+ |-+.+ ..+-.-..|++.|.......+--..+....|.+.|
T Consensus 431 a-------------------~Ala~ik~-l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqv 490 (522)
T PF05701_consen 431 A-------------------LALAEIKA-LSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQV 490 (522)
T ss_pred H-------------------HHHHHHHH-hhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11233333 11111 12334458888888887765555556677888999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhH
Q 006962 495 EAARSAEKEALMKLGLLMEEADKSNR 520 (623)
Q Consensus 495 e~Ak~ae~ea~~kl~~~~ee~~~s~~ 520 (623)
++|++.+.++++||--+..|.+.+..
T Consensus 491 e~ak~se~e~l~kle~~~~e~~~~k~ 516 (522)
T PF05701_consen 491 EAAKASEKEILEKLEEAMKEIEERKE 516 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877653
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.27 E-value=8.3e-06 Score=93.57 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=73.6
Q ss_pred HHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 398 EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 398 eELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.++...+-+...++..+-.+...|..++..-. .-.++..+|..+..++..|+..+-+.+.....+..+...++.+|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~ 637 (880)
T PRK02224 561 AEAEEEAEEAREEVAELNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKR 637 (880)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444456666666666666665332 256777777788888888888777777777777777888888887
Q ss_pred hhhccCC-ccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHH
Q 006962 478 KRELDTP-NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQL 529 (623)
Q Consensus 478 k~e~~~~-~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL 529 (623)
..+.... ...+.+......+...-...-.+++.+..+.+.-..+...+..++
T Consensus 638 ~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~ 690 (880)
T PRK02224 638 ELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL 690 (880)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543211 233334444444444444444444444544444444444433333
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.01 E-value=7.8e-05 Score=92.70 Aligned_cols=239 Identities=21% Similarity=0.308 Sum_probs=147.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHh--
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQET-- 148 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~-- 148 (623)
|.+|++++.-++++|..-+.+.+-+|..+.....++++-+.++.+.. ..... ...+.+.+-.|++++...+
T Consensus 1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~---~~t~~----q~e~~~k~e~e~~~l~~~lee 1171 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQG---GTTAA----QLELNKKREAEVQKLRRDLEE 1171 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777666665551 11111 1222333444445544444
Q ss_pred -HHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 006962 149 -DQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLR 227 (623)
Q Consensus 149 -d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~ 227 (623)
...-...++.+++.|+..++-|...+..+++.|..|.--.. .++..-+++...+..+..-+-.
T Consensus 1172 e~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~--------------~lq~e~~~l~~ev~~~~~~k~~-- 1235 (1930)
T KOG0161|consen 1172 ETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKS--------------DLQREIADLAAELEQLSSEKKD-- 1235 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhcc--
Confidence 44556778889999999999999999999999998875332 2222333332222222221111
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCC
Q 006962 228 ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNC 307 (623)
Q Consensus 228 e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~ 307 (623)
++.-.-...+.+.++..++......+..|-..-.+++.++..+...|+++++.+..+-...+.+...+....
T Consensus 1236 -~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k------- 1307 (1930)
T KOG0161|consen 1236 -LEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELK------- 1307 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 111111112334666777777777777788888899999999999999998888777666666665433111
Q ss_pred CCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHH
Q 006962 308 SGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI 349 (623)
Q Consensus 308 ~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~ 349 (623)
-....+.+.-..|...+..+..|+..|+..++.
T Consensus 1308 ---------~qle~e~r~k~~l~~~l~~l~~e~~~l~e~lee 1340 (1930)
T KOG0161|consen 1308 ---------RQLEEETREKSALENALRQLEHELDLLREQLEE 1340 (1930)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223334444667777777777777777763
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.99 E-value=0.00012 Score=91.22 Aligned_cols=111 Identities=23% Similarity=0.330 Sum_probs=76.4
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHH
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEE 514 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee 514 (623)
++|.....++..++.+|--.|.+.|..+..+...+..+..+|. +.-..++. ..-.=..+-..
T Consensus 1262 ~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle-----------~~k~qle~-------e~r~k~~l~~~ 1323 (1930)
T KOG0161|consen 1262 NDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLE-----------ELKRQLEE-------ETREKSALENA 1323 (1930)
T ss_pred HHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-------HHHHHHHHHHH
Confidence 4466677777777888888888888877777777777777776 22111211 11111112222
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHh
Q 006962 515 ADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM 563 (623)
Q Consensus 515 ~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa~ 563 (623)
+.....-...+.+|++-.+.++.+|.-.+.+..+++.|||+=.+.-..-
T Consensus 1324 l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~ 1372 (1930)
T KOG0161|consen 1324 LRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ 1372 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334778999999999999999999999999999999988766554
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=98.88 E-value=0.0005 Score=79.23 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=23.8
Q ss_pred hHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 436 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 436 el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
++...+..+...++.+...+.+.+..+..+.++.+.|..++.
T Consensus 513 ~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~ 554 (880)
T PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555666666666666666666655554
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.79 E-value=0.00022 Score=85.51 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=69.0
Q ss_pred HHHhhhhH----HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhch-----HHHHHHHHHH---HHhhccCCCCcc
Q 006962 505 LMKLGLLM----EEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQS-----DQWRKAAEAA---ASMLSTGNNGKC 572 (623)
Q Consensus 505 ~~kl~~~~----ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQs-----eQWRKAAeaA---aa~Ls~g~ng~~ 572 (623)
+..||.|. +|.++...|-..+..|++....|...+..-+..+.-.. +=|.+...-= -..|.|||+|.+
T Consensus 958 i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L 1037 (1163)
T COG1196 958 IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAEL 1037 (1163)
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEE
Confidence 55666654 77888899999999999988888888777666654332 2233333322 234556777864
Q ss_pred cccccCCCCCCCC-------------------CC---------------CCCCCCCC--CCcc---hhhhhhccCchhhH
Q 006962 573 MERSGSIDSNYNP-------------------IT---------------GKIPLPYS--DDID---DDLLKKKNGNVLKK 613 (623)
Q Consensus 573 ~er~gs~d~~~~~-------------------~~---------------g~~~sp~~--dd~d---d~~~kkkng~~lk~ 613 (623)
.= +++-| .|++ -| .+..+||+ |+.| |+...++=+++|+.
T Consensus 1038 ~l-~~~dd-~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e 1115 (1163)
T COG1196 1038 EL-TEPDD-PLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKE 1115 (1163)
T ss_pred Ee-CCCCc-hhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHH
Confidence 43 44434 3441 12 26788884 6665 44566767777777
Q ss_pred hh
Q 006962 614 IG 615 (623)
Q Consensus 614 ~g 615 (623)
++
T Consensus 1116 ~s 1117 (1163)
T COG1196 1116 MS 1117 (1163)
T ss_pred hC
Confidence 65
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.77 E-value=9.6e-05 Score=82.64 Aligned_cols=232 Identities=23% Similarity=0.257 Sum_probs=145.1
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHH
Q 006962 204 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 283 (623)
Q Consensus 204 ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~ 283 (623)
++.++++...+--++++.++..-.+.++.+++-+.-+.++..++.....+...+..+...+.+.++.+. .+++
T Consensus 228 di~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q-------e~lq 300 (546)
T PF07888_consen 228 DIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ-------EQLQ 300 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-------HHHH
Confidence 344444444444455566665555556555554433344555544444444444444444444444444 4444
Q ss_pred hHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHH
Q 006962 284 LLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV 363 (623)
Q Consensus 284 ~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~ 363 (623)
.-++.+..|...+.... ..-.+.-++|..++-+..+|+..|.++...+.|.+.+..
T Consensus 301 aSqq~~~~L~~EL~~~~-----------------------~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~- 356 (546)
T PF07888_consen 301 ASQQEAELLRKELSDAV-----------------------NVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWA- 356 (546)
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44444444444332111 011346788999999999999999988888876665443
Q ss_pred HHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHh
Q 006962 364 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK 443 (623)
Q Consensus 364 ~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~ 443 (623)
+.+. -|.......+..|..|+..+--++.-||.=--|+..|..+|++..++. ...|.-
T Consensus 357 qEk~-----------------~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n-----~vqlsE 414 (546)
T PF07888_consen 357 QEKQ-----------------ALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCN-----RVQLSE 414 (546)
T ss_pred HHHH-----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHHHH
Confidence 1111 122223345678889999998888899998889999999998654444 236777
Q ss_pred hHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccch
Q 006962 444 LAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNS 488 (623)
Q Consensus 444 ~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ 488 (623)
...+|.+||+.|-.-.+|-..+..||.+|+-.|.+.+...+++.|
T Consensus 415 ~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 415 NRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888999988777777778889999998888866655444433
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.77 E-value=0.0011 Score=76.62 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=18.0
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhh
Q 006962 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 425 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei 425 (623)
+..++..+...+.++...+-.-+.++..+.++...|...|
T Consensus 745 l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 784 (1179)
T TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443333
No 10
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.72 E-value=0.0012 Score=76.79 Aligned_cols=69 Identities=28% Similarity=0.375 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhh
Q 006962 385 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANL 455 (623)
Q Consensus 385 ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L 455 (623)
-+..+++.++..|..|-..|-|+++.|-.+.++...|-+-..+. .....-|...|.+..+.+..|...|
T Consensus 469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~--~s~i~~l~I~lEk~rek~~kl~~ql 537 (775)
T PF10174_consen 469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK--DSEIERLEIELEKKREKHEKLEKQL 537 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh--hhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35567777777788888888888887777777777766655432 1123345555666666666555544
No 11
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.69 E-value=0.0036 Score=77.89 Aligned_cols=425 Identities=20% Similarity=0.255 Sum_probs=244.5
Q ss_pred CchhhhHHHHHHHHHH----HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh---hhHHHHHHHH
Q 006962 69 SRISELESQVSRLQED----LKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS---ASEEARAVEL 141 (623)
Q Consensus 69 ~r~seLesql~q~Qee----LkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~S---a~e~sr~~El 141 (623)
.++.+|+..+...+.+ ++++.+++.+....+.....++.-..-++.=+..+|+-..+-+.-.- ..+..|-..|
T Consensus 636 ~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l 715 (1822)
T KOG4674|consen 636 KRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNL 715 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444433 34455555555555555555554444444333344443322221111 1222455555
Q ss_pred HHHhHHhHH---hhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcH------
Q 006962 142 QKVSQETDQ---SCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNL------ 212 (623)
Q Consensus 142 qk~~q~~d~---~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~l------ 212 (623)
+..-+..+. ..-+||-++.. -+...-.||..||.+=.+-..++.....--+....+.+.++..+
T Consensus 716 ~~~i~~~~q~~~~~s~eL~~a~~-------k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~ 788 (1822)
T KOG4674|consen 716 QSTISKQEQTVHTLSQELLSANE-------KLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQ 788 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444 23333333222 35566678888888877777777776666666665555555432
Q ss_pred ----------------HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962 213 ----------------IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 276 (623)
Q Consensus 213 ----------------aetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe 276 (623)
..-..|+..+...-..+.+-....+.+-+..-.+|+.+...|+.+..+..++...+.++...++
T Consensus 789 ~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 868 (1822)
T KOG4674|consen 789 KNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIA 868 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222223333444457788888889999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh--
Q 006962 277 RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL-- 354 (623)
Q Consensus 277 ~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~-- 354 (623)
.-+.++..|+.-+........+-+. + +.+.+...+...|.....+|.-|+..|.++....
T Consensus 869 ~le~k~~eL~k~l~~~~~~~~~l~~-------~-----------~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~ 930 (1822)
T KOG4674|consen 869 KLEIKLSELEKRLKSAKTQLLNLDS-------K-----------SSNEDATILEDTLRKELEEITDLKEELTDALSQIRE 930 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhccc-------c-----------chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888877776654331 1 1122333444445555555655555555544433
Q ss_pred -hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 006962 355 -NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQR 433 (623)
Q Consensus 355 -qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~k 433 (623)
++.|. +.=..++++++....=-.++++.++.....|..|.-+|++-+++...++++=. ..++. .-.+
T Consensus 931 yqe~~~-------s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~---~~~k~--~e~~ 998 (1822)
T KOG4674|consen 931 YQEEYS-------SLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELE---LSTKG--KEDK 998 (1822)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccc--hhhh
Confidence 33222 11234566677666666888888999999999999888888888777765532 22211 1112
Q ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHH
Q 006962 434 ESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLME 513 (623)
Q Consensus 434 e~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~e 513 (623)
=..+..++.-+..++..+....-+-...+..+..++...-..++ .|-..-+.=-.--.+...+|+.+.+
T Consensus 999 ~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~-----------~a~~~Ye~el~~ha~~~q~l~kl~e 1067 (1822)
T KOG4674|consen 999 LLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLR-----------KAQSKYESELVQHADLTQKLIKLRE 1067 (1822)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455555555555555555444444444444444333322222 1111111111112345677888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 006962 514 EADKSNRRAARMAEQLEAAQSANCEAEA 541 (623)
Q Consensus 514 e~~~s~~~~ar~~EqL~aaq~a~~elEa 541 (623)
++.+.+.-+-.+..-.+..+.++.+.++
T Consensus 1068 e~~~~~~e~~~Lk~~~~~~~~~l~e~~~ 1095 (1822)
T KOG4674|consen 1068 EFAKCNDELLKLKKSRESRHALLSEQER 1095 (1822)
T ss_pred HHHHHHHHHHHHHhhHHHHHhHHhhccc
Confidence 8888888888888888888877766543
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=98.63 E-value=0.0025 Score=73.23 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHH
Q 006962 500 AEKEALMKLGLLMEEADKSNRRAARMAEQLEAA 532 (623)
Q Consensus 500 ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aa 532 (623)
.-.+.-.+++.+..+++.-......+.++++..
T Consensus 667 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555444
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=0.0042 Score=75.66 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 006962 72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQEL 130 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~ 130 (623)
..|+..+..++.++..+++..+.++..-..+...+.....++..+..+|+.....+...
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~ 631 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV 631 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67888888899999999999988888888888888888888888888888887777743
No 14
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.62 E-value=0.0031 Score=73.56 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=91.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQ-AQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETD 149 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~-a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d 149 (623)
+.+|+.-...++.+|...-.-|.++-+.-+. ...+|+--+....+.+.+|.-.+.|+-..-+--...-.+++.+..++
T Consensus 5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL- 83 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL- 83 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 3344444444555555554445444444333 56677777777777778887777777766665556667788877777
Q ss_pred HhhHHHHHHHhhh------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHH
Q 006962 150 QSCQSELQAIQNQ------HSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMK 223 (623)
Q Consensus 150 ~~wqsEleavq~q------hs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lK 223 (623)
-.+.|+...+.+ +......|.-+-..+.+|..+......-=..--.-.+.++..|+.+++++..+-.-|+.|.
T Consensus 84 -r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~ 162 (775)
T PF10174_consen 84 -RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQ 162 (775)
T ss_pred -HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766665 2211222444555555555554443332222335778888999999999855555555555
Q ss_pred HHh
Q 006962 224 NQL 226 (623)
Q Consensus 224 s~l 226 (623)
..|
T Consensus 163 e~L 165 (775)
T PF10174_consen 163 EML 165 (775)
T ss_pred HHH
Confidence 444
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.62 E-value=0.0031 Score=73.51 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHH
Q 006962 503 EALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAA 561 (623)
Q Consensus 503 ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAa 561 (623)
+.-.++..+.++++........+..+++..+.....++.++..++.+.+++....+..-
T Consensus 872 ~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 930 (1164)
T TIGR02169 872 ELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555666666666666666666666666666666665554433
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.61 E-value=0.0031 Score=73.10 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=9.1
Q ss_pred HHHHHhhchhhHHHHHHHHHHH
Q 006962 329 LEEELSSLKSEVGQLRSALEIA 350 (623)
Q Consensus 329 Le~EL~s~ksEIeeLRsaLe~~ 350 (623)
+..++..+..++..|...+...
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAEL 696 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.55 E-value=0.0038 Score=72.84 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006962 79 SRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQ 126 (623)
Q Consensus 79 ~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ 126 (623)
......++.+.+.| .++.+.+.+.+.++..+...++.++++
T Consensus 166 ~~~~~~~~~~~~~l-------~~~~~~l~el~~~~~~L~~q~~~l~~~ 206 (1164)
T TIGR02169 166 AEFDRKKEKALEEL-------EEVEENIERLDLIIDEKRQQLERLRRE 206 (1164)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 444444455555555544444444333
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.31 E-value=0.023 Score=68.72 Aligned_cols=91 Identities=25% Similarity=0.398 Sum_probs=41.4
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhh-----hhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHH
Q 006962 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN-----LMCQRESQLNNDLRKLAQAVEDLKANLMDKET 460 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~-----~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~ 460 (623)
+..++..+...+.+|.+.+...+..+..+.+.=..|+..+..- .-...-..+..++...+..+..|...+...+.
T Consensus 742 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1163)
T COG1196 742 LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ 821 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455556666666666655555555555421 11123334444444444444444444444433
Q ss_pred HHhhHHHhhHHHHHHh
Q 006962 461 ELQNISEENEMLKLEI 476 (623)
Q Consensus 461 elq~~~~ene~Lk~e~ 476 (623)
.++.+..+.+.+..++
T Consensus 822 ~~~~~~~ei~~l~~~~ 837 (1163)
T COG1196 822 RRERLEQEIEELEEEI 837 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334433333333
No 19
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.29 E-value=1.4e-07 Score=109.56 Aligned_cols=360 Identities=22% Similarity=0.332 Sum_probs=0.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHh
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQET 148 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~ 148 (623)
..|-+|++++.-+++||..-+.--+.+|..|..+..+|++.+.+|.+.... -.....+-+-|=.||.++..++
T Consensus 39 k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~-------t~aq~E~~kkrE~El~~Lrr~L 111 (859)
T PF01576_consen 39 KKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGA-------TQAQIELNKKREAELAKLRRDL 111 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-------HHhhHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999988889999998888888877766554422 1222223334446777777777
Q ss_pred HH---hhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 006962 149 DQ---SCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQ 225 (623)
Q Consensus 149 d~---~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~ 225 (623)
+. .-...+..+++.|...++.|..-+..+++.|..|+-... . +..++.+....|+.+-..
T Consensus 112 Ee~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~---~--------------l~~e~~dL~~~l~~~~k~ 174 (859)
T PF01576_consen 112 EEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKS---Q--------------LEAELDDLQAQLDSLQKA 174 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------HHhHHHHHHHHHHHHHHH
Confidence 64 334668889999999999999999999998887764322 1 222222222222222222
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhcccccccc
Q 006962 226 LRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 305 (623)
Q Consensus 226 l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~ 305 (623)
-.+++...-+...-+.++..+++-...++.-|...-.++...+..|...|+..++.+..|.-..+.|...+......
T Consensus 175 k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~--- 251 (859)
T PF01576_consen 175 KQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQ--- 251 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---
Confidence 22222222222333355666666777777777777777777788888888877777777766666666544322211
Q ss_pred CCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHH---HhhhhhhhhhHHHHh---hH--------HHH
Q 006962 306 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE---TKLNEGQIQSTVKIK---SA--------FEQ 371 (623)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~E---tr~qEE~i~st~~i~---~a--------ye~ 371 (623)
+ ..+...-..|...+..+..++..|+..|++-. ..|+-.+..++.+|. .- ++.
T Consensus 252 -----l--------eeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~Ee 318 (859)
T PF01576_consen 252 -----L--------EEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEE 318 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----H--------HhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHH
Confidence 0 01111222244555555555555555554211 111111111111111 00 122
Q ss_pred HHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHH
Q 006962 372 LEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDL 451 (623)
Q Consensus 372 ~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~L 451 (623)
++..|--...+-.++...|..++..+. --|..-..+..|.+-|.+++.+. ...-..|...-++++..++++
T Consensus 319 lEeaKKkL~~~L~el~e~le~~~~~~~-------~LeK~k~rL~~EleDl~~eLe~~--~~~~~~LeKKqr~fDk~l~e~ 389 (859)
T PF01576_consen 319 LEEAKKKLERKLQELQEQLEEANAKVS-------SLEKTKKRLQGELEDLTSELEKA--QAAAAELEKKQRKFDKQLAEW 389 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHH
Confidence 233333333333333333333332222 22333344555666666666533 222345666666777777777
Q ss_pred HHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 452 KANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 452 Ka~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
|+.+.+.-.++..+..++..+..++.
T Consensus 390 k~~~~~~~~e~d~~q~e~r~~~te~~ 415 (859)
T PF01576_consen 390 KAKVEELQAERDAAQREARELETELF 415 (859)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77666555555555555555555544
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.11 E-value=0.073 Score=66.86 Aligned_cols=97 Identities=26% Similarity=0.355 Sum_probs=73.5
Q ss_pred chHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhh------hhhhhhhhhHHHHHHhhHHHHHHHHHhh
Q 006962 382 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK------NLMCQRESQLNNDLRKLAQAVEDLKANL 455 (623)
Q Consensus 382 RE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~------~~~~~ke~el~~~l~~~~~~v~~LKa~L 455 (623)
|-.||..++.+++.+|+.|.-.|--..++++-++-+++.|..+... .+......--..++.++..+|..||..|
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888888888888888888888777641 1222223344567888888999999999
Q ss_pred hhhHHHHhhHHHhhHHHHHHhch
Q 006962 456 MDKETELQNISEENEMLKLEISK 478 (623)
Q Consensus 456 ~dke~elq~~~~ene~Lk~e~~k 478 (623)
..|++.++.+..++..++..+++
T Consensus 1324 ~~ke~~~~el~~~~~~~q~~~k~ 1346 (1822)
T KOG4674|consen 1324 EEKENLIAELKKELNRLQEKIKK 1346 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888866653
No 21
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.03 E-value=1e-06 Score=102.54 Aligned_cols=377 Identities=24% Similarity=0.292 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHH-HHHHHHHH
Q 006962 151 SCQSELQAIQNQHSIDSAA-------LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIE-TISLMENM 222 (623)
Q Consensus 151 ~wqsEleavq~qhs~Dsaa-------L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~lae-tl~lvE~l 222 (623)
.|.+.|+-++.+....+-. |-..-.++..|+.+|..-.++.+..-.....++.+|..++..+.. +...+
T Consensus 240 ~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~--- 316 (859)
T PF01576_consen 240 SLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRT--- 316 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH---
Confidence 4566666666665544443 444445667777777777777777777777777777777777633 22212
Q ss_pred HHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccc
Q 006962 223 KNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRN 302 (623)
Q Consensus 223 Ks~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~ 302 (623)
.++++++-....-+.++..+++.++..+..|.---.++...+.-+..+|+...+.+..||.-+.++...++.....
T Consensus 317 ----EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 317 ----EELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2233333333334478888899999999999999999999999999999999999999999888887655533311
Q ss_pred cccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhc
Q 006962 303 LSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQS 379 (623)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses 379 (623)
+... .........++..+..++-.++.++++++..++..+..- +.|...++.+ ....
T Consensus 393 --------~~~~-~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q-----------~~~~ 452 (859)
T PF01576_consen 393 --------VEEL-QAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQ-----------LDDA 452 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------HHHH-HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhh-----------hhhh
Confidence 1000 111222334555566777777777777777666555432 4444444322 3344
Q ss_pred ccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh--h------hhhhhhhhhHHHHHHhhHHHHHHH
Q 006962 380 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD--K------NLMCQRESQLNNDLRKLAQAVEDL 451 (623)
Q Consensus 380 ~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~--~------~~~~~ke~el~~~l~~~~~~v~~L 451 (623)
+..-++|+...+.+...+.+|+..|-+-|..|+.. |+..|..++. . ..-..++.++..--+..-..|..|
T Consensus 453 ~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~--E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~l 530 (859)
T PF01576_consen 453 GKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE--EQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESL 530 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHH
Confidence 55668899999999999999999999999999884 4444444432 1 111233444444444444455555
Q ss_pred HHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHH
Q 006962 452 KANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEA 531 (623)
Q Consensus 452 Ka~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~a 531 (623)
.+.|..=-..-..+....--|-.+|+-.+......+ -...-+...-......+.-+.-+++...+--..+.+++..
T Consensus 531 e~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n----~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~ 606 (859)
T PF01576_consen 531 EAELEEERKERAEALREKKKLESDLNELEIQLDHAN----RANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAV 606 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 555532222222333333334444442221111110 0001111111222333334445556655555566666667
Q ss_pred HHHhhHHHHHHHhhhhhchHH---HHHHHHHH
Q 006962 532 AQSANCEAEAELRRLKVQSDQ---WRKAAEAA 560 (623)
Q Consensus 532 aq~a~~elEaElrrLrVQseQ---WRKAAeaA 560 (623)
++.-...|.+|+-.+++..++ =||.||+=
T Consensus 607 ~e~r~~~l~~elee~~~~~~~a~r~rk~aE~e 638 (859)
T PF01576_consen 607 SERRLRALQAELEELREALEQAERARKQAESE 638 (859)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888888775555 56666643
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=0.091 Score=64.44 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=25.5
Q ss_pred CCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh
Q 006962 306 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL 354 (623)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~ 354 (623)
.|.-+|...+. .+.-.++|+..+..+-..+..+...+...+..|
T Consensus 682 LC~R~f~~eee-----~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 725 (1311)
T TIGR00606 682 VCQRVFQTEAE-----LQEFISDLQSKLRLAPDKLKSTESELKKKEKRR 725 (1311)
T ss_pred CCCCCCCChhH-----HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 57777654433 123455566666666556666666666655555
No 23
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.90 E-value=0.012 Score=67.39 Aligned_cols=252 Identities=23% Similarity=0.292 Sum_probs=150.4
Q ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHh
Q 006962 255 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELS 334 (623)
Q Consensus 255 e~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~ 334 (623)
-.+.-....+.+.+..|..+.+..-.+|..||--+++|+..++... .+.|+..+. ..-.+|..++.
T Consensus 25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~--~~~~pa~ps------------e~E~~Lq~E~~ 90 (617)
T PF15070_consen 25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP--PPEPPAGPS------------EVEQQLQAEAE 90 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--Cccccccch------------HHHHHHHHHHH
Confidence 3455556677788888999999999999999999999998776433 223332221 11123556666
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhH-----------------
Q 006962 335 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDI----------------- 397 (623)
Q Consensus 335 s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdI----------------- 397 (623)
.++.|++.|...|.+- . +.|.+++ .+..+...|-.+|+..|.......
T Consensus 91 ~L~kElE~L~~qlqaq-v---~~ne~Ls-----------~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~ 155 (617)
T PF15070_consen 91 HLRKELESLEEQLQAQ-V---ENNEQLS-----------RLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA 155 (617)
T ss_pred HHHHHHHHHHHHHHHH-H---HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 6666665555544421 1 1222222 112222333344444444444433
Q ss_pred -------HHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhH
Q 006962 398 -------EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENE 470 (623)
Q Consensus 398 -------eELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene 470 (623)
.+||..|-.-+.-+-.|+.+|-.|.+.+....- .-.+|...|-.+...+..+|..+.-|+.+++++..++.
T Consensus 156 SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~--~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d 233 (617)
T PF15070_consen 156 SRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQH--VKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD 233 (617)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345555544444444455555444444432222 22578888889999999999999999999999999999
Q ss_pred HHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhh----hHHHH--HHhhHHHH---------HHHHHHHHHHHh
Q 006962 471 MLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGL----LMEEA--DKSNRRAA---------RMAEQLEAAQSA 535 (623)
Q Consensus 471 ~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~----~~ee~--~~s~~~~a---------r~~EqL~aaq~a 535 (623)
.+...+..|.+.- -.-+.|.+++-+=-+ ++..+ +++..++. ...+.|+++-.-
T Consensus 234 q~~~~Lqqy~a~~------------q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qq 301 (617)
T PF15070_consen 234 QYLGHLQQYVAAY------------QQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQ 301 (617)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998764221 222456666655322 22233 22333333 455788888888
Q ss_pred hHHHHHHHhhhhhc
Q 006962 536 NCEAEAELRRLKVQ 549 (623)
Q Consensus 536 ~~elEaElrrLrVQ 549 (623)
|..|.+.|.-+..-
T Consensus 302 NqqL~~qls~~~~~ 315 (617)
T PF15070_consen 302 NQQLQAQLSLMALP 315 (617)
T ss_pred hHHHHHHHHhhcCC
Confidence 88888888766543
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=97.72 E-value=0.17 Score=58.56 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 006962 79 SRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSS 118 (623)
Q Consensus 79 ~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~Ss 118 (623)
..++..++..+.++......-.....++...+.++..+..
T Consensus 189 ~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~ 228 (880)
T PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK 228 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445545555555555555555555555544444443
No 25
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.67 E-value=0.24 Score=58.87 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhh
Q 006962 175 NELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESK 230 (623)
Q Consensus 175 ~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~k 230 (623)
-|++++|.||+-.-+=+++-...-.+-+.+|...|.+.-++...-+.++..+.|.-
T Consensus 255 ~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a 310 (1243)
T KOG0971|consen 255 KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555666677777777777777777777766654
No 26
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.66 E-value=1.4e-05 Score=91.11 Aligned_cols=84 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHH
Q 006962 383 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL 462 (623)
Q Consensus 383 E~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~el 462 (623)
..-|..++....++|..|...+-+-+.++..+..++..++..+... ...-..|+..+.....++.-||+.|-..+++.
T Consensus 352 ~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~--~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 352 NASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEAL--KKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444455555555555555555555555555666666666655422 12234667777777788888888887777766
Q ss_pred hhHHHh
Q 006962 463 QNISEE 468 (623)
Q Consensus 463 q~~~~e 468 (623)
......
T Consensus 430 ~~~~~~ 435 (722)
T PF05557_consen 430 TTMNPS 435 (722)
T ss_dssp ------
T ss_pred ccccCc
Confidence 555433
No 27
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.53 E-value=0.25 Score=55.25 Aligned_cols=135 Identities=28% Similarity=0.389 Sum_probs=83.5
Q ss_pred hhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHH-----
Q 006962 324 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIE----- 398 (623)
Q Consensus 324 ~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIe----- 398 (623)
.+...+.+++..+...|.+|++.+.+.|.++..+...+.-..+.+=.+......- +.++.....++.
T Consensus 281 ~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------e~e~~l~~~el~~~~ee 352 (511)
T PF09787_consen 281 QERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT--------EAELRLYYQELYHYREE 352 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHHHHH
Confidence 3566677788888888888888888888888766655543333222222211111 222222222222
Q ss_pred ------HHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHH
Q 006962 399 ------ELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEML 472 (623)
Q Consensus 399 ------ELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~L 472 (623)
.+-..+.+||+|+|.+ ...+.........++++ .-+..|...|..|.+.|..++-|+..|
T Consensus 353 ~~~~~s~~~~k~~~ke~E~q~l-------r~~l~~~~~~s~~~elE-------~rl~~lt~~Li~KQ~~lE~l~~ek~al 418 (511)
T PF09787_consen 353 LSRQKSPLQLKLKEKESEIQKL-------RNQLSARASSSSWNELE-------SRLTQLTESLIQKQTQLESLGSEKNAL 418 (511)
T ss_pred HHHhcChHHHHHHHHHHHHHHH-------HHHHHHHhccCCcHhHH-------HHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 2335678899998885 44444333233344544 444557778889999999999999999
Q ss_pred HHHhchhh
Q 006962 473 KLEISKRE 480 (623)
Q Consensus 473 k~e~~k~e 480 (623)
..++.+.+
T Consensus 419 ~lqlErl~ 426 (511)
T PF09787_consen 419 RLQLERLE 426 (511)
T ss_pred cccHHHHH
Confidence 98887544
No 28
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.38 E-value=0.11 Score=58.82 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=38.4
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 437 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 437 l~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
...||+.+...|..|+++|-|.|..-..+....+.|+.++.
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD 334 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence 45789999999999999999999999999999999999987
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.35 E-value=0.23 Score=50.88 Aligned_cols=94 Identities=20% Similarity=0.358 Sum_probs=70.5
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhh--hhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN--LMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~--~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
-...+..++.++.+++..+-.-.++|.++-..|..|...|..- .-...-..+...+..++.++..|+..+-..-.+.+
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 4455678888899999999999999999999999999888621 11223345677788888888888888888888888
Q ss_pred hHHHhhHHHHHHhchh
Q 006962 464 NISEENEMLKLEISKR 479 (623)
Q Consensus 464 ~~~~ene~Lk~e~~k~ 479 (623)
.|+.-.-.|-.||..|
T Consensus 287 ~Ll~~K~~Ld~EIatY 302 (312)
T PF00038_consen 287 ELLDVKLALDAEIATY 302 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH
Confidence 8777777776666533
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.32 E-value=0.26 Score=50.59 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=62.7
Q ss_pred HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhh
Q 006962 241 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKEN 320 (623)
Q Consensus 241 ~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~ 320 (623)
.++..+.......+..++.+...+.-.+.+|..+|+.-+++...||..+..++....
T Consensus 198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~----------------------- 254 (312)
T PF00038_consen 198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD----------------------- 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH-----------------------
Confidence 555555556666677777777777777777777777777777777777777776443
Q ss_pred hhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962 321 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 321 ~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
.+...+...+..+..+|.+||..+..--..|+
T Consensus 255 ---~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 255 ---EEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 12333566777788888888888877777775
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.27 E-value=0.15 Score=57.85 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=70.4
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhH
Q 006962 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI 465 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~ 465 (623)
...||++....|..|++.|-|-|+.-+.+...-+.|+..+... -.-.+..|..++..|..++...-..-.|||.|
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~-----~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDED-----QRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhh-----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4478999999999999999999998888888888887777643 23456677777778888888777777788888
Q ss_pred HHhhHHHHHHhchh
Q 006962 466 SEENEMLKLEISKR 479 (623)
Q Consensus 466 ~~ene~Lk~e~~k~ 479 (623)
+.=+-+|-.||..|
T Consensus 369 lD~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 369 LDTKISLDAEIAAY 382 (546)
T ss_pred hchHhHHHhHHHHH
Confidence 88888888777643
No 32
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.20 E-value=0.24 Score=56.74 Aligned_cols=185 Identities=21% Similarity=0.240 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccc
Q 006962 234 TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDL 313 (623)
Q Consensus 234 Aqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~ 313 (623)
.+.+.+ .++..+|+.....|+.+..+...+...+.++..++++.+.....||..+.-.. .+. ++
T Consensus 325 ~~~~el-~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~-k~~--------------~l 388 (594)
T PF05667_consen 325 EQEQEL-EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK-KTV--------------EL 388 (594)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------------HH
Confidence 445555 88888899999999999999999999999999999999999888887776333 222 01
Q ss_pred hhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHH---HHHHH
Q 006962 314 GQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVE---LEAEL 390 (623)
Q Consensus 314 ~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~E---LeaEL 390 (623)
...+.. -...|+.=+.....-+..|....+....-+-+||..+-. ..+.++.+ .-.++
T Consensus 389 L~d~e~-----ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~--------------~~~~~~~e~~~~~~~i 449 (594)
T PF05667_consen 389 LPDAEE-----NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKE--------------KASNRESESKQKLQEI 449 (594)
T ss_pred hcCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHhhcchHHHHHHHHH
Confidence 111111 124466666677777777777777777766666665532 22222222 34678
Q ss_pred HhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHH
Q 006962 391 QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKA 453 (623)
Q Consensus 391 Kk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa 453 (623)
+.+...+.++...+-.||-....+..+++.+.-.+....=+.|..|+.+-++|-+.+|...=.
T Consensus 450 k~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~ 512 (594)
T PF05667_consen 450 KELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILS 512 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999988888899999999999998887776433
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.12 E-value=1.2 Score=54.61 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=14.6
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhhhh
Q 006962 329 LEEELSSLKSEVGQLRSALEIAETKLNE 356 (623)
Q Consensus 329 Le~EL~s~ksEIeeLRsaLe~~Etr~qE 356 (623)
...++...+..+..|+......+.++.+
T Consensus 647 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 674 (1201)
T PF12128_consen 647 AEQELKQAEQDLQRLKNEREQLKQEIEE 674 (1201)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555543
No 34
>PRK11637 AmiB activator; Provisional
Probab=97.06 E-value=0.63 Score=50.52 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHH----HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHh
Q 006962 177 LQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETIS----LMENMKNQLRESKESETQAQALARETLLQLETAKL 252 (623)
Q Consensus 177 iq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~----lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~aka 252 (623)
+.++-.-+.....+....+..-..+..+|...+..+...+. ++..+..+..++.....+-+.++..+..++..-.+
T Consensus 154 ~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~ 233 (428)
T PRK11637 154 GERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQ 233 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555566666666666666665543333 22233333333333333333333444333333333
Q ss_pred HHHHHHH
Q 006962 253 SVEALRA 259 (623)
Q Consensus 253 tve~L~a 259 (623)
.+..|..
T Consensus 234 ~l~~l~~ 240 (428)
T PRK11637 234 QLSELRA 240 (428)
T ss_pred HHHHHHH
Confidence 3333333
No 35
>PF13514 AAA_27: AAA domain
Probab=97.05 E-value=1.3 Score=53.71 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=62.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhc-hHHHHHHHHHHHHhhccCC-CCc-----------ccccccCC
Q 006962 513 EEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQ-SDQWRKAAEAAASMLSTGN-NGK-----------CMERSGSI 579 (623)
Q Consensus 513 ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQ-seQWRKAAeaAaa~Ls~g~-ng~-----------~~er~gs~ 579 (623)
++...-.....++.++.-+...|..-|+.-+++.|-. -+.=-+.|....+.|++|. .|- +|.|++..
T Consensus 940 ~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G~Y~~l~~d~d~~~~~l~~~~~~G~ 1019 (1111)
T PF13514_consen 940 QEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASEYFSRLTGGRYSRLRVDEDGDKPVLVVVRADGE 1019 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCCceeeeccccCcccceEEecCCe
Confidence 3444444555566666667777777888888888753 2455556777788887775 111 12222111
Q ss_pred CCCCC--C------------------C-CCCCCCCC-CCCcchhhhhhccCchhhHhhhhhcCCC
Q 006962 580 DSNYN--P------------------I-TGKIPLPY-SDDIDDDLLKKKNGNVLKKIGVLWKKPQ 622 (623)
Q Consensus 580 d~~~~--~------------------~-~g~~~sp~-~dd~dd~~~kkkng~~lk~~g~LWKK~~ 622 (623)
--+.+ + + .+...-|| +||..--|--.|-..||+.|+.|=++.|
T Consensus 1020 ~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~Q 1084 (1111)
T PF13514_consen 1020 RVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQ 1084 (1111)
T ss_pred EeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCe
Confidence 10000 0 1 12344455 3766655666667788888888765543
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.98 E-value=1.6 Score=53.57 Aligned_cols=190 Identities=21% Similarity=0.281 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHH------------
Q 006962 102 AQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAA------------ 169 (623)
Q Consensus 102 a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~wqsEleavq~qhs~Dsaa------------ 169 (623)
...++-..+..+.....+|+..+.+...+- ...+-++.+. ..+.-.|+.+++.++.++..=...
T Consensus 311 ~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye---~~~i~~~~~~-~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~ 386 (1201)
T PF12128_consen 311 LNKELSALNADLARIKSELDEIEQQKKDYE---DADIEQLIAR-VDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLK 386 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777788887766655542 2223333332 234567888888877765432222
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHH------------HHHHhhhcHHHHHHHHHHHHHHhhHhhhhH-
Q 006962 170 --LASAL-NELQQLKAQFEMVAESEAAQTKNAESAHL------------ELQSLKGNLIETISLMENMKNQLRESKESE- 233 (623)
Q Consensus 170 --L~sal-~Eiq~LK~qL~~~~esea~al~~Ae~a~~------------ELe~lk~~laetl~lvE~lKs~l~e~keSe- 233 (623)
|.... ..+..+..++....+..+......+.... .++.++.........+..++.++.......
T Consensus 387 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e 466 (1201)
T PF12128_consen 387 QKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEE 466 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHH
Confidence 11111 12333344444444444444333333321 112222222222223333333333222111
Q ss_pred -----HHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962 234 -----TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 295 (623)
Q Consensus 234 -----Aqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~ 295 (623)
..+..-++....++..+...+..++.+...+.........+|...+.++..++..+..|+.-
T Consensus 467 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 467 EKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222224444555566666677777777777777777777777777777777777777743
No 37
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.90 E-value=1.9 Score=53.01 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=63.7
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHH---HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Q 006962 204 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALA---RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT 280 (623)
Q Consensus 204 ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~---~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~ 280 (623)
||+.|-..|.+.++-+-+.-..|...+-.-++|..|. ....+.-+..+.++++.+.-...+..+++-....+.++-+
T Consensus 1512 qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~ 1591 (1758)
T KOG0994|consen 1512 QIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADR 1591 (1758)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6666777776666655555555666665556665554 3334444555666677777777777777777788888777
Q ss_pred HHHhHHHHHHHHhhhhhcc
Q 006962 281 RINLLEGLVSKLEADTSNA 299 (623)
Q Consensus 281 r~~~LE~lvskLq~~~a~~ 299 (623)
-+.-.++++.+++..++.+
T Consensus 1592 ~~~~a~~~l~kv~~~t~~a 1610 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAA 1610 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777788888888766643
No 38
>PRK11637 AmiB activator; Provisional
Probab=96.77 E-value=0.39 Score=52.10 Aligned_cols=82 Identities=18% Similarity=0.322 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
.++-.+++.....+...++.|-++-.+|+.+..+.+.-+ .+|..........+..|+.++-..+.+|.
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k------------~~L~~~k~e~~~~l~~L~~~~~~~~~~l~ 236 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQ------------QKLEQARNERKKTLTGLESSLQKDQQQLS 236 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444444443333322 33344444444555666666666666666
Q ss_pred hHHHhhHHHHHHhc
Q 006962 464 NISEENEMLKLEIS 477 (623)
Q Consensus 464 ~~~~ene~Lk~e~~ 477 (623)
.+..+...|...|.
T Consensus 237 ~l~~~~~~L~~~I~ 250 (428)
T PRK11637 237 ELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655554
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.55 E-value=1.1 Score=49.30 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=22.4
Q ss_pred HHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHh
Q 006962 245 LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 293 (623)
Q Consensus 245 ~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq 293 (623)
.+++.-+..+..|..+.....+.++.+..++...+..+..++....-+.
T Consensus 234 ~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 234 AEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333334444433333344444455555555555555555554443
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.50 E-value=0.043 Score=52.10 Aligned_cols=112 Identities=23% Similarity=0.353 Sum_probs=76.9
Q ss_pred HHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH
Q 006962 446 QAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM 525 (623)
Q Consensus 446 ~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~ 525 (623)
..+..|...+..+|.++.+|..-|..|-.++.+.+.......+.+...-.....+| -.--|+..|.+|++.+..+....
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666666666666666665544433322222221111222223 56678999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHH
Q 006962 526 AEQLEAAQSANCEAEAELRRLKVQSDQWRKAAE 558 (623)
Q Consensus 526 ~EqL~aaq~a~~elEaElrrLrVQseQWRKAAe 558 (623)
+++|+-+...-+.+|-=++.|--+.++|=+=-+
T Consensus 100 ~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 100 TEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999966444
No 41
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.41 E-value=0.015 Score=66.93 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHH
Q 006962 253 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE 332 (623)
Q Consensus 253 tve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~E 332 (623)
.+..|+-+-..+.+.++++.+++..-+..+..|+..+.++........... .. .......|+--
T Consensus 344 ~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~--------------~~--~~~~~~RLerq 407 (722)
T PF05557_consen 344 ALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASL--------------EA--LKKLIRRLERQ 407 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH--HHHHHHHHHHH
Confidence 345666666777777777777777777777777776666664433222111 00 11122335555
Q ss_pred HhhchhhHHHHHHHHHHHHH
Q 006962 333 LSSLKSEVGQLRSALEIAET 352 (623)
Q Consensus 333 L~s~ksEIeeLRsaLe~~Et 352 (623)
..-+.-||+-||+-|..-++
T Consensus 408 ~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 408 KALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 66666788888888886444
No 42
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.40 E-value=2.8 Score=48.56 Aligned_cols=253 Identities=25% Similarity=0.309 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhH-----hhhhHHHHHHHH----HHH
Q 006962 173 ALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRE-----SKESETQAQALA----RET 243 (623)
Q Consensus 173 al~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e-----~keSeAqa~aL~----~E~ 243 (623)
+-.|+++||.+|.... ..+.+-.--+..+..|+..+.+...+++...-+... |.+.-+...+.+ ..+
T Consensus 119 ~~~e~~~lk~~lee~~----~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~ 194 (629)
T KOG0963|consen 119 ASEENEELKEELEEVN----NELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNL 194 (629)
T ss_pred hhhhHHHHHHHHHHHH----HHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888777644 355566666678888888888877777665543332 333333333333 556
Q ss_pred HHHHHHhHhHHHHHHH------------------hhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhcccccccc
Q 006962 244 LLQLETAKLSVEALRA------------------EGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 305 (623)
Q Consensus 244 ~~QLE~akatve~L~a------------------dg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~ 305 (623)
..|++.+..+|..|.+ +..--.+.|+-+-.+|+.+..|+..||..+..|...++.+..+..+
T Consensus 195 ~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~ 274 (629)
T KOG0963|consen 195 QEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL 274 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 6777777777755522 1333345788888999999999999999999998766544322100
Q ss_pred CCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHH
Q 006962 306 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVE 385 (623)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~E 385 (623)
....+++.+..-|++..++|.+|=..+.--++-++++...+-.+|. .
T Consensus 275 ---------------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~------------------~ 321 (629)
T KOG0963|consen 275 ---------------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQIS------------------A 321 (629)
T ss_pred ---------------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 1123556677777888888888888888888888888877776665 5
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhh--HHHHHHHHHhhhhhHHHHh
Q 006962 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKL--AQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~--~~~v~~LKa~L~dke~elq 463 (623)
|+.+|+.+++.|++|+..| ++-++=++ |+++++.=+.-++-.---.. ++.+.-|--.|.+|+..||
T Consensus 322 le~~l~~~~~~leel~~kL-------~~~sDYee-----IK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq 389 (629)
T KOG0963|consen 322 LEKELKAKISELEELKEKL-------NSRSDYEE-----IKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQ 389 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH-------hhhccHHH-----HHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhh
Confidence 8899999999999998654 44333332 33332222222222000000 0334455566777777655
Q ss_pred hHHHhhHHHHHHhc
Q 006962 464 NISEENEMLKLEIS 477 (623)
Q Consensus 464 ~~~~ene~Lk~e~~ 477 (623)
.||..|+..-.
T Consensus 390 ---~e~a~Lr~~n~ 400 (629)
T KOG0963|consen 390 ---NENASLRVANS 400 (629)
T ss_pred ---HHHHHHhcccc
Confidence 46666755443
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=4.1 Score=49.59 Aligned_cols=183 Identities=22% Similarity=0.277 Sum_probs=111.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhH-------HHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhh
Q 006962 263 KAIEAYSSIASELERSRTRINLL-------EGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSS 335 (623)
Q Consensus 263 Ka~e~~~sl~~eLe~S~~r~~~L-------E~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s 335 (623)
+..+.|..+..+++.++.++... +..+++++.++..... ...+..+.|+.+++.
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~-------------------~re~rlkdl~keik~ 798 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA-------------------NRERRLKDLEKEIKT 798 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-------------------hhHhHHHHHHHHHHH
Confidence 44555555555555555555544 4555566655543321 123467779999999
Q ss_pred chhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhcccch---HHHH-------HHHHhhhhhHHHHHH
Q 006962 336 LKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQSGLRE---VELE-------AELQKAKSDIEELKA 402 (623)
Q Consensus 336 ~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses~qRE---~ELe-------aELKk~ksdIeELKA 402 (623)
++..+++-+..++-.+-.| +=|.++++-.|.+.--++++.....+.=+ ++|. ...+++-+.|.+.|+
T Consensus 799 ~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~ 878 (1174)
T KOG0933|consen 799 AKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKA 878 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 9999999999999999888 35556666666665555555554333222 2233 345566677888899
Q ss_pred hhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHH
Q 006962 403 NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS 466 (623)
Q Consensus 403 ~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~ 466 (623)
+++|--|++-++.-.-+.+..++... .-.-..|..++.++..+-+..+..+..+..+..-|.
T Consensus 879 k~~~~dt~i~~~~~~~e~~~~e~~~~--~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 879 KQRDIDTEISGLLTSQEKCLSEKSDG--ELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHhhhHHHhhhhhHHHHHHHHhhcc--cchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 99999999988888777777776411 112234455555555555555554444444444333
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.30 E-value=1.5 Score=48.23 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 445 AQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 445 ~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
...+.+++..+-.....+..+..++..|+.+|.
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~ 368 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIE 368 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.17 E-value=3.4 Score=47.36 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=80.2
Q ss_pred HHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhh
Q 006962 385 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN 464 (623)
Q Consensus 385 ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~ 464 (623)
..-++|-.+.-+.+.|+..|.|-..+|+.- .+=.. ..++ -|........+.|..|+..+..++.-||.
T Consensus 322 rt~aeLh~aRLe~aql~~qLad~~l~lke~----~~q~~-------qEk~-~l~~~~e~~k~~ie~L~~el~~~e~~lqE 389 (546)
T PF07888_consen 322 RTMAELHQARLEAAQLKLQLADASLELKEG----RSQWA-------QEKQ-ALQHSAEADKDEIEKLSRELQMLEEHLQE 389 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHH-------HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888888766655331 10011 1111 12222223347889999999999999999
Q ss_pred HHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHh
Q 006962 465 ISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELR 544 (623)
Q Consensus 465 ~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElr 544 (623)
=-.|+..|..+|++ +.+-+.| .+ .| .-..-.|+..+-+.+..=+|||. .-+-+|=-.|+
T Consensus 390 er~E~qkL~~ql~k-e~D~n~v------ql-------sE----~~rel~Elks~lrv~qkEKEql~---~EkQeL~~yi~ 448 (546)
T PF07888_consen 390 ERMERQKLEKQLGK-EKDCNRV------QL-------SE----NRRELQELKSSLRVAQKEKEQLQ---EEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHH-hhhhhHH------HH-------HH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 99999999999984 2211111 11 11 11222345555555556667774 36777888888
Q ss_pred hhhhchHH
Q 006962 545 RLKVQSDQ 552 (623)
Q Consensus 545 rLrVQseQ 552 (623)
+|+--.+.
T Consensus 449 ~Le~r~~~ 456 (546)
T PF07888_consen 449 RLEQRLDK 456 (546)
T ss_pred HHHHHHHH
Confidence 88755543
No 46
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=1.7 Score=49.94 Aligned_cols=176 Identities=24% Similarity=0.260 Sum_probs=104.6
Q ss_pred hHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhH
Q 006962 250 AKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHL 329 (623)
Q Consensus 250 akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~L 329 (623)
+..+|+.|+.+...+...|.+...+ .++.-+|=+.-|..... -...+++|
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e------~~qaAeyGL~lLeeK~~------------------------Lkqq~eEl 55 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEE------KIQAAEYGLELLEEKED------------------------LKQQLEEL 55 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH------------------------HHHHHHHH
Confidence 4567889999988888777655443 44444554444443222 12256679
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHhhh------hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHh
Q 006962 330 EEELSSLKSEVGQLRSALEIAETKLN------EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 403 (623)
Q Consensus 330 e~EL~s~ksEIeeLRsaLe~~Etr~q------EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~ 403 (623)
++++..++.|+++++.+|--.-+..+ +++..+-++--.|-| -.|.++-.+|+.+||++...+.
T Consensus 56 eaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE------~~yl~kI~eleneLKq~r~el~----- 124 (772)
T KOG0999|consen 56 EAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKE------EYYLQKILELENELKQLRQELT----- 124 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHH-----
Confidence 99999999999999999986655553 566655544322221 2455666777888877766555
Q ss_pred hcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 404 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 404 LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
++.+||+.|-........+. .-++.+-.++.++|.++|-+=--.=.+.--+.+||=.|.++..
T Consensus 125 ---------~~q~E~erl~~~~sd~~e~~--~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs 187 (772)
T KOG0999|consen 125 ---------NVQEENERLEKVHSDLKESN--AAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS 187 (772)
T ss_pred ---------HHHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 44556665544332211111 3344555666777777775322222233445667766666654
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.86 E-value=2.3 Score=49.93 Aligned_cols=108 Identities=24% Similarity=0.361 Sum_probs=61.4
Q ss_pred cccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006962 379 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK 458 (623)
Q Consensus 379 s~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk 458 (623)
+.+|..+|+.|++++..++...-..++.-|.++|.+-.-+ +....|+..|-.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~-----------------------~e~~~~~e~L~~----- 594 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE-----------------------KESEKDTEVLMS----- 594 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhhhhhHHHHHH-----
Confidence 3457788888887776665555555554444443221110 111234444544
Q ss_pred HHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 006962 459 ETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE 538 (623)
Q Consensus 459 e~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~e 538 (623)
.|+.+.+.|..|.+-|.- .+.++= +-+.-||- ..-||+-++...-.
T Consensus 595 --aL~amqdk~~~LE~sLsa----EtriKl--------------dLfsaLg~--------------akrq~ei~~~~~~~ 640 (697)
T PF09726_consen 595 --ALSAMQDKNQHLENSLSA----ETRIKL--------------DLFSALGD--------------AKRQLEIAQGQLRK 640 (697)
T ss_pred --HHHHHHHHHHHHHHhhhH----HHHHHH--------------HHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 788888999988776650 011111 11222221 23578888888888
Q ss_pred HHHHHhhhhh
Q 006962 539 AEAELRRLKV 548 (623)
Q Consensus 539 lEaElrrLrV 548 (623)
-|.|+.-||-
T Consensus 641 ~d~ei~~lk~ 650 (697)
T PF09726_consen 641 KDKEIEELKA 650 (697)
T ss_pred HHHHHHHHHH
Confidence 8999999983
No 48
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.81 E-value=2.5 Score=42.79 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=42.9
Q ss_pred hcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhh
Q 006962 378 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD 457 (623)
Q Consensus 378 es~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~d 457 (623)
+..+|-.-++..|.++..-++.+-..+.+-|.+|..+. |..=.+++.....+.++..+...++.+...+.+.-.....
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~--~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~ 194 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG--NNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEF 194 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH--HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555541 2222333333333444444444444444444444444444
Q ss_pred hHHHHhhHHHhhHHHHHHh
Q 006962 458 KETELQNISEENEMLKLEI 476 (623)
Q Consensus 458 ke~elq~~~~ene~Lk~e~ 476 (623)
-|..+..+..++..|..+|
T Consensus 195 aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 195 AERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.70 E-value=9.3 Score=48.57 Aligned_cols=270 Identities=19% Similarity=0.225 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcH-------HHH-HHHHHHHHHHhhHhhhhHHHHHHHHH
Q 006962 170 LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNL-------IET-ISLMENMKNQLRESKESETQAQALAR 241 (623)
Q Consensus 170 L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~l-------aet-l~lvE~lKs~l~e~keSeAqa~aL~~ 241 (623)
|..+-..+..+-.+|.....-.-++..++..+.-.|..|+.=+ .+| -.-|+.+..++..+.++..-+... .
T Consensus 839 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~-~ 917 (1486)
T PRK04863 839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQH-G 917 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 6666666777777777776666666666666666666666543 222 245677888888899888887777 7
Q ss_pred HHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhh
Q 006962 242 ETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQ 321 (623)
Q Consensus 242 E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 321 (623)
....+||..-..++.-..+-.-+...|.+....+.+...++-.|.+++..-.- -.|.+....-. .
T Consensus 918 ~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~y~~~~~~l~-~ 982 (1486)
T PRK04863 918 NALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAH--------------FSYEDAAEMLA-K 982 (1486)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHhHhh-c
Confidence 77777777766666555555555556666666666666777776666554331 11332211000 0
Q ss_pred hhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHH
Q 006962 322 DTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELK 401 (623)
Q Consensus 322 ~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELK 401 (623)
.+.-...|+..+..+..+-..+|..+..++..|+.=+... ..+.++|. .+...|+.++..+.+|=
T Consensus 983 ~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l-~slksslq--------------~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 983 NSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVL-ASLKSSYD--------------AKRQMLQELKQELQDLG 1047 (1486)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------------HHHHHHHHHHHHHHHcC
Confidence 1112223566666666666666666666665554221111 11111111 22222333333222221
Q ss_pred HhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHH
Q 006962 402 ANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKL 474 (623)
Q Consensus 402 A~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~ 474 (623)
-. .|-..|.+--+.. +.|...+.. .-.+-..|...+.....+|..|+.+|.+.+.++..+.++...+|.
T Consensus 1048 ~~-~~~~~~~~~~~~~-~~l~~~l~~--~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~ 1116 (1486)
T PRK04863 1048 VP-ADSGAEERARARR-DELHARLSA--NRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116 (1486)
T ss_pred CC-CCccHHHHHHHhH-HHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1222222222222 333333332 234567888888888999999999999999999888888887776
No 50
>PRK01156 chromosome segregation protein; Provisional
Probab=95.62 E-value=6.7 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=11.0
Q ss_pred hhhHHHHHhhchhhHHHHHHHHH
Q 006962 326 SKHLEEELSSLKSEVGQLRSALE 348 (623)
Q Consensus 326 ~~~Le~EL~s~ksEIeeLRsaLe 348 (623)
.+.++.+++.+..++.+|+..+.
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~ 493 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVK 493 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555554443
No 51
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.61 E-value=8.1 Score=47.23 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=60.0
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHH--HHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962 218 LMENMKNQLRESKESETQAQALARETLLQLETAKLSV--EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 295 (623)
Q Consensus 218 lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatv--e~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~ 295 (623)
-++-||..+.++++.-+--.+-.+=+.-||+--++.- -+|.++-.+++--+.-++++.+.=+.+...|-...++|+..
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455888888888774433333344555665444433 56778888888888889999999999999999999999976
Q ss_pred hhccc
Q 006962 296 TSNAN 300 (623)
Q Consensus 296 ~a~~~ 300 (623)
.++.+
T Consensus 338 ~eqL~ 342 (1195)
T KOG4643|consen 338 KEQLD 342 (1195)
T ss_pred HHHhh
Confidence 66544
No 52
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.41 E-value=8.1 Score=48.48 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=33.3
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006962 67 RPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQD 105 (623)
Q Consensus 67 r~~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~e 105 (623)
|..||.+|+.+|..+...+..+..++......+..+..+
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556799999999999999999999998887777766655
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.30 E-value=3.8 Score=41.49 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=18.8
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhhhhhhhh
Q 006962 332 ELSSLKSEVGQLRSALEIAETKLNEGQIQS 361 (623)
Q Consensus 332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~s 361 (623)
.|..+...+.+.+..+.+++.+|.|=.-.+
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl 122 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEVERKL 122 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666677777777777776544433
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.28 E-value=13 Score=47.44 Aligned_cols=180 Identities=21% Similarity=0.245 Sum_probs=89.1
Q ss_pred HHHHHHHHhhhc---ccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhh----hhhh--h---
Q 006962 368 AFEQLEQIKHQS---GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM----CQRE--S--- 435 (623)
Q Consensus 368 aye~~e~~Kses---~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~----~~ke--~--- 435 (623)
+...++.++.-+ .--..+|...|....+.+.++...+-+.|.+|..+....+.+......-.. +.+. .
T Consensus 419 ~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~ 498 (1486)
T PRK04863 419 AVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVA 498 (1486)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 334556666655 455566777777777777777777777777777776666666655432111 1110 0
Q ss_pred -hH---HHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhh
Q 006962 436 -QL---NNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL 511 (623)
Q Consensus 436 -el---~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~ 511 (623)
++ -.+++-+...+.-|++.|-+.+..|+.-..-+ .|-.+.+++- . ....++...+.. ..+.++
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~---~~~~~~------- 565 (1486)
T PRK04863 499 RELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAE-RLLAEFCKRL-G-KNLDDEDELEQL---QEELEA------- 565 (1486)
T ss_pred HHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-C-CCCCCHHHHHHH---HHHHHH-------
Confidence 11 11233444555666666666666444332222 2223333211 0 122222221111 112222
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 006962 512 MEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAAS 562 (623)
Q Consensus 512 ~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa 562 (623)
+++.-+.-.+.+.++....+.--.+|-..+.+|.-+..+|.+|=+|..-
T Consensus 566 --~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~ 614 (1486)
T PRK04863 566 --RLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR 614 (1486)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH
Confidence 2222222333334444444444556777777777777777777666554
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.17 E-value=12 Score=46.56 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHhhh---cHHHHHHHHHHHHHHhhHhh
Q 006962 197 NAESAHLELQSLKG---NLIETISLMENMKNQLRESK 230 (623)
Q Consensus 197 ~Ae~a~~ELe~lk~---~laetl~lvE~lKs~l~e~k 230 (623)
|..+...+|+...- .+.+++.+++..+..+....
T Consensus 568 ~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~ 604 (1317)
T KOG0612|consen 568 HSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKEN 604 (1317)
T ss_pred hhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 45555566666665 57888888888877766543
No 56
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.06 E-value=4 Score=43.82 Aligned_cols=209 Identities=20% Similarity=0.230 Sum_probs=107.8
Q ss_pred HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHh----hhh----hccccccccCCC----
Q 006962 241 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE----ADT----SNANRNLSQNCS---- 308 (623)
Q Consensus 241 ~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq----~~~----a~~~~~~~~~~~---- 308 (623)
++..+-|+.|-.-.-+|..--..+.+.+..+.-.|..+.-.|.-|--.|+.-- +-+ -+..++.++.+-
T Consensus 72 eEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~ 151 (306)
T PF04849_consen 72 EEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNE 151 (306)
T ss_pred HHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccc
Confidence 45555555554444555555555555555565566555555555444433211 100 011111111000
Q ss_pred CCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHH
Q 006962 309 GDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEA 388 (623)
Q Consensus 309 ~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELea 388 (623)
........+-...-++-+..|+.|-..++.|..+|+..-...|-+.|-=...+.=++.. .+..-+.|..
T Consensus 152 ~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~-----------An~qia~Lse 220 (306)
T PF04849_consen 152 SSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSE-----------ANQQIASLSE 220 (306)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----------cchhHHHHHH
Confidence 00000011111223334555777888888888888765443333222111112112222 2222233444
Q ss_pred HH-------HhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHH
Q 006962 389 EL-------QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE 461 (623)
Q Consensus 389 EL-------Kk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~e 461 (623)
+| .+--.+|.-|-+.+.|.+..++.++-||+.|...+.....+ ...|.++|.-+.+--++.-+-|.+-..+
T Consensus 221 ELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~--Q~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 221 ELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKES--QRQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34566899999999999999999999999999999744333 3557777666655555555544444333
Q ss_pred H
Q 006962 462 L 462 (623)
Q Consensus 462 l 462 (623)
|
T Consensus 299 l 299 (306)
T PF04849_consen 299 L 299 (306)
T ss_pred H
Confidence 3
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.85 E-value=11 Score=44.46 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=16.1
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHH
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALE 348 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe 348 (623)
..+-++..+.....||.+||+.|.
T Consensus 630 q~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 630 QLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567777778888888665
No 58
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.74 E-value=5.4 Score=47.18 Aligned_cols=193 Identities=22% Similarity=0.243 Sum_probs=109.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHH
Q 006962 68 PSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQE 147 (623)
Q Consensus 68 ~~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~ 147 (623)
|+-+++|=|-|.- -|.+|++.||...|..|......|.++|+||.-....|...+.+...+.+- +.=|.++...
T Consensus 252 ~~lv~DLfSEl~~--~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~----l~aL~~l~~~ 325 (717)
T PF09730_consen 252 PSLVSDLFSELNL--SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQ----LDALRKLQED 325 (717)
T ss_pred Ccccchhhhhcch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhccc
Confidence 4557777777653 478899999999999999999999999999988887777665555544422 3333332221
Q ss_pred hHHh--hHHHHHHH----hhhhhccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHH
Q 006962 148 TDQS--CQSELQAI----QNQHSIDSAA-------LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIE 214 (623)
Q Consensus 148 ~d~~--wqsEleav----q~qhs~Dsaa-------L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~lae 214 (623)
.+.. -.++-... -..|..|.-. +..+..|+..||.+|-....--+..-.++......+
T Consensus 326 ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~--------- 396 (717)
T PF09730_consen 326 KEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRL--------- 396 (717)
T ss_pred hhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1110 00000000 1112233211 445666666666666543321111111222221111
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962 215 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 276 (623)
Q Consensus 215 tl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe 276 (623)
..-+..|..++..++++--+.++.+..+...|.++...+.--.+....+++++-.+.-+|-
T Consensus 397 -~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLA 457 (717)
T PF09730_consen 397 -ESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELA 457 (717)
T ss_pred -HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2334555556666666555556666777777777777666666666666666666666654
No 59
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=16 Score=45.52 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=77.8
Q ss_pred HHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhH-----
Q 006962 385 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKE----- 459 (623)
Q Consensus 385 ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke----- 459 (623)
.+.++.+.....|+.|+-.+..-|.....+...++.|+..-+.-..-.+|-+-..+=..+...|..|+..++..-
T Consensus 824 ~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q 903 (1293)
T KOG0996|consen 824 KLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQ 903 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhH
Confidence 345555666666666666666666666666666665552221100011111111011111344444544444332
Q ss_pred ---HHHhhHHHhhHHHHHHhchhhccCCc---cchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 006962 460 ---TELQNISEENEMLKLEISKRELDTPN---MNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQ 533 (623)
Q Consensus 460 ---~elq~~~~ene~Lk~e~~k~e~~~~~---~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq 533 (623)
..+..+.+....|...|.+......+ --.-+.-.+.-....-.+.--++-.|++++..-..+++-+...+..++
T Consensus 904 ~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~ 983 (1293)
T KOG0996|consen 904 AQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAE 983 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 23444445555555555443322110 000111122223233334444555667777666666666666677777
Q ss_pred HhhHHHHHHHhhhhhchH
Q 006962 534 SANCEAEAELRRLKVQSD 551 (623)
Q Consensus 534 ~a~~elEaElrrLrVQse 551 (623)
++..++-.++.-++-+-+
T Consensus 984 ~~~~E~k~~~~~~k~~~e 1001 (1293)
T KOG0996|consen 984 ESLKEIKKELRDLKSELE 1001 (1293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 766666666666555443
No 60
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.69 E-value=12 Score=44.19 Aligned_cols=146 Identities=21% Similarity=0.336 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH-------HHhHHhHH
Q 006962 78 VSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQ-------KVSQETDQ 150 (623)
Q Consensus 78 l~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elq-------k~~q~~d~ 150 (623)
+..+.-+|.+..++++..+-.+..-..-|.+|+..-..+-++|++++.-+...-..-...--+|+ ++-++.|-
T Consensus 256 ~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~ 335 (786)
T PF05483_consen 256 IKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEA 335 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45667777788888888888888778888888888888888888765544443333332222333 34444432
Q ss_pred hhHHHHHHHhhhhhccHHHHHHHHHHHHHH-HHHHHHHHHHH-------------HHHHh----hhhhhHHHHHHhhhcH
Q 006962 151 SCQSELQAIQNQHSIDSAALASALNELQQL-KAQFEMVAESE-------------AAQTK----NAESAHLELQSLKGNL 212 (623)
Q Consensus 151 ~wqsEleavq~qhs~DsaaL~sal~Eiq~L-K~qL~~~~ese-------------a~al~----~Ae~a~~ELe~lk~~l 212 (623)
---|+-.++.+|+.+++-|-.|+..++.| ..+...+...+ +.-+. .-....++|+.|+..|
T Consensus 336 -~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L 414 (786)
T PF05483_consen 336 -QMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKIL 414 (786)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 23477888999999999877776655432 11111111111 11111 1112236888899998
Q ss_pred HHHHHHHHHHHH
Q 006962 213 IETISLMENMKN 224 (623)
Q Consensus 213 aetl~lvE~lKs 224 (623)
.+.-++++..+.
T Consensus 415 ~e~qkll~ekk~ 426 (786)
T PF05483_consen 415 AEKQKLLDEKKQ 426 (786)
T ss_pred HHHHHHHHHHHH
Confidence 887777776655
No 61
>PRK01156 chromosome segregation protein; Provisional
Probab=94.62 E-value=13 Score=44.09 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=15.6
Q ss_pred hhhhhHHHHHhhchhhHHHHHHHHHH
Q 006962 324 MESKHLEEELSSLKSEVGQLRSALEI 349 (623)
Q Consensus 324 ~e~~~Le~EL~s~ksEIeeLRsaLe~ 349 (623)
.+.+.++.+++.++.++..|+..+..
T Consensus 476 ~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 476 EKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665553
No 62
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=17 Score=45.25 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhH-HHHHHHHHHHHHHH
Q 006962 489 NLAAEVEAARSAEKEALMKLGLLMEEADKSNR-RAARMAEQLEAAQS 534 (623)
Q Consensus 489 ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~-~~ar~~EqL~aaq~ 534 (623)
++...+.-++..=.+....++.+.+..++-++ |.. +.-++++.-.
T Consensus 981 e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~ 1026 (1293)
T KOG0996|consen 981 EAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAING 1026 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHH
Confidence 55555555665556666666666666655555 333 5555544433
No 63
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.32 E-value=15 Score=43.64 Aligned_cols=212 Identities=23% Similarity=0.263 Sum_probs=130.1
Q ss_pred hhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHH-HHHHhHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962 198 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL-QLETAKLSVEALRAEGMKAIEAYSSIASELE 276 (623)
Q Consensus 198 Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~-QLE~akatve~L~adg~Ka~e~~~sl~~eLe 276 (623)
+++++--|.+|-..+--..+-=+++|.+...+++.=| ..+.+ .|-...--|+.|-++|.|+.-
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela------~~l~~DeLaEkdE~I~~lm~EGEkLSK---------- 467 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELA------AALLKDELAEKDEIINQLMAEGEKLSK---------- 467 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHhHH----------
Confidence 3344444444444443334444555555555543311 11111 122233457899999999862
Q ss_pred HHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHH--hh
Q 006962 277 RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAET--KL 354 (623)
Q Consensus 277 ~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Et--r~ 354 (623)
-.++- ..+|.||.+..--++ +... .+..-+..+-+|...|++-|.++|. ++
T Consensus 468 ---~ql~q-s~iIkKLRAk~ke~e----------------------tl~~-K~ge~i~~L~sE~~~lk~il~~Kee~Ek~ 520 (961)
T KOG4673|consen 468 ---KQLAQ-SAIIKKLRAKIKEAE----------------------TLEE-KKGELITKLQSEENKLKSILRDKEETEKL 520 (961)
T ss_pred ---HHHHH-HHHHHHHHHHhhhhh----------------------HHHH-HhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 23333 567777775422111 0011 1223444666777888888887764 22
Q ss_pred hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 006962 355 NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRE 434 (623)
Q Consensus 355 qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke 434 (623)
+-|+| +.+.+++++-+.+..++++..-|+|..+..|.--|..++..+.+. ..-+.
T Consensus 521 ~~E~I------------------------~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~-nrlkQ 575 (961)
T KOG4673|consen 521 LQETI------------------------EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKE-NRLKQ 575 (961)
T ss_pred HHHHH------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-hhhhh
Confidence 33333 668899999999999999999999999999999999999977422 11234
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhHHHHh----hHHHhhHHHHHHhc
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMDKETELQ----NISEENEMLKLEIS 477 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~dke~elq----~~~~ene~Lk~e~~ 477 (623)
.++..+-..+-..|.+|+..|--+|..+. -+-.||+.|..-+.
T Consensus 576 dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlq 622 (961)
T KOG4673|consen 576 DEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQ 622 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667788888888888876653 46677777766554
No 64
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.27 E-value=0.96 Score=45.22 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=83.2
Q ss_pred hhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHH---HHHHHH
Q 006962 376 KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQ---AVEDLK 452 (623)
Q Consensus 376 Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~---~v~~LK 452 (623)
|.=|+.-=..-=.-++.+|.+|.++|.+....+..++.|+-||..|.--+.+.. ..-.+|...|..... .+..+|
T Consensus 15 K~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~--~e~~eL~k~L~~y~kdK~~L~~~k 92 (201)
T PF13851_consen 15 KNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAE--EEVEELRKQLKNYEKDKQSLQNLK 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344457899999999999999999999999999999998887431 222566666665554 445678
Q ss_pred HhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccch
Q 006962 453 ANLMDKETELQNISEENEMLKLEISKRELDTPNMNS 488 (623)
Q Consensus 453 a~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ 488 (623)
+.+...+.+|..+.-+++.|.....+.+.++...+.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998876655544433
No 65
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.26 E-value=0.012 Score=67.49 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHh
Q 006962 244 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 293 (623)
Q Consensus 244 ~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq 293 (623)
..++......++.|.-+...+.+.+..+..+-+........|.+.+..|+
T Consensus 376 e~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 376 EQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334444555555555555555555554544444444444444443
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.22 E-value=8.9 Score=40.69 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=54.3
Q ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHH
Q 006962 253 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE 332 (623)
Q Consensus 253 tve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~E 332 (623)
+++.|..|...+......+..-+...+.+++.|+..+..|+...... +.+...+.+.+..+
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~-------------------~~~D~~eL~~lr~e 217 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI-------------------ESCDQEELEALRQE 217 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hhcCHHHHHHHHHH
Confidence 34556666666666666777777777788888888888888754421 12234456667777
Q ss_pred HhhchhhHHHHHHHHHHHHHhh
Q 006962 333 LSSLKSEVGQLRSALEIAETKL 354 (623)
Q Consensus 333 L~s~ksEIeeLRsaLe~~Etr~ 354 (623)
|...+.+|+.+|..|...+.++
T Consensus 218 L~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776554444
No 67
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=8.9 Score=44.41 Aligned_cols=106 Identities=24% Similarity=0.353 Sum_probs=56.2
Q ss_pred hhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHH---h
Q 006962 327 KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA---N 403 (623)
Q Consensus 327 ~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA---~ 403 (623)
-.|+.||+.++.++..-++.++.-+...|+.... =..++.+-.+++++|-++|- .
T Consensus 110 ~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~----------------------~~~~E~qR~rlr~elKe~KfRE~R 167 (772)
T KOG0999|consen 110 LELENELKQLRQELTNVQEENERLEKVHSDLKES----------------------NAAVEDQRRRLRDELKEYKFREAR 167 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------------------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 3377777777777766666555444444432211 12234444556666665552 3
Q ss_pred hcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-HHHHHHhhHHHHHHHHHhhhh
Q 006962 404 LMDKETELQGISEENEGLHMQLDKNLMCQRESQ-LNNDLRKLAQAVEDLKANLMD 457 (623)
Q Consensus 404 LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~e-l~~~l~~~~~~v~~LKa~L~d 457 (623)
|+- +---+-|||=+|+..+-.-..++-|.| |+-+++++.+++.-|+-.+.|
T Consensus 168 lls---eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 168 LLS---EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred HHH---HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 222234677777666654444454443 556666666666666655544
No 68
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.09 E-value=13 Score=42.26 Aligned_cols=442 Identities=17% Similarity=0.225 Sum_probs=192.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhH
Q 006962 70 RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETD 149 (623)
Q Consensus 70 r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d 149 (623)
++++++.++..+.+.+.+-+ + .+|...+.++...+..+...+......+.++-.++..--.++..++.. =
T Consensus 80 ~~~~ie~~l~~ae~~~~~~~--f-------~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~-y 149 (569)
T PRK04778 80 SLPDIEEQLFEAEELNDKFR--F-------RKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDL-Y 149 (569)
T ss_pred hhhhHHHHHHHHHHHHhccc--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45666666666666654322 1 345555555555555555555555555555555555544454444332 2
Q ss_pred HhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHh
Q 006962 150 QSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRES 229 (623)
Q Consensus 150 ~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~ 229 (623)
+..+..+-+-+++-..=...|..-+..|+..=.+......+ +-=..|.--|..++..+..--..|+.+-..+.+|
T Consensus 150 ~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~-----Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~ 224 (569)
T PRK04778 150 RELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTES-----GDYVEAREILDQLEEELAALEQIMEEIPELLKEL 224 (569)
T ss_pred HHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454555554444555777777777666666553331 1112222333334433333333333333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCC
Q 006962 230 KESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSG 309 (623)
Q Consensus 230 keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~ 309 (623)
. ..+=.||+.-+.....|..+|-.+.. -.+..++..-+.++......+..|+.+.+....
T Consensus 225 ~----------~~~P~ql~el~~gy~~m~~~gy~~~~--~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~-------- 284 (569)
T PRK04778 225 Q----------TELPDQLQELKAGYRELVEEGYHLDH--LDIEKEIQDLKEQIDENLALLEELDLDEAEEKN-------- 284 (569)
T ss_pred H----------HHhhHHHHHHHHHHHHHHHcCCCCCC--CChHHHHHHHHHHHHHHHHHHHhcChHHHHHHH--------
Confidence 3 22223555555555555555544332 122333333333333333333333322221110
Q ss_pred CccchhhhhhhhhhhhhhhHHHHH---hhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHH
Q 006962 310 DYDLGQKIKENQDTMESKHLEEEL---SSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVEL 386 (623)
Q Consensus 310 ~~~~~~~~~~~~~~~e~~~Le~EL---~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~EL 386 (623)
. .-...+++|..-| ..++..|+.....+...=....+.+..+.. .+++++..|...+.++
T Consensus 285 -----~-----~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~-------Ei~~l~~sY~l~~~e~ 347 (569)
T PRK04778 285 -----E-----EIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE-------EIDRVKQSYTLNESEL 347 (569)
T ss_pred -----H-----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHccccCchhH
Confidence 0 0001111111111 123444554444444444444444444432 3445666555444443
Q ss_pred HHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHH
Q 006962 387 EAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS 466 (623)
Q Consensus 387 eaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~ 466 (623)
. ..+.+..++.+|...+-+-+..+-........+..++..- ..+-.++..+...+...|..|+..-.+-...|+.+.
T Consensus 348 ~-~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel--~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~ 424 (569)
T PRK04778 348 E-SVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI--LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR 424 (569)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2333333444444333322222222222222222222111 112234455555555555555555555555555555
Q ss_pred HhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006962 467 EENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRL 546 (623)
Q Consensus 467 ~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrL 546 (623)
.....+|..+.+ ...+.+++.-......+.. ++..+..+++...=+.. |.+..-.+...-+..|
T Consensus 425 ~~L~~ikr~l~k--~~lpgip~~y~~~~~~~~~-------~i~~l~~~L~~g~VNm~-------ai~~e~~e~~~~~~~L 488 (569)
T PRK04778 425 NKLHEIKRYLEK--SNLPGLPEDYLEMFFEVSD-------EIEALAEELEEKPINME-------AVNRLLEEATEDVETL 488 (569)
T ss_pred HHHHHHHHHHHH--cCCCCCcHHHHHHHHHHHH-------HHHHHHHHhccCCCCHH-------HHHHHHHHHHHHHHHH
Confidence 555555555543 2233444444434433321 22222222222222222 2222233344455566
Q ss_pred hhchHHHHHHHHHHHHhhccCCCCcccccccCCCCCCC
Q 006962 547 KVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYN 584 (623)
Q Consensus 547 rVQseQWRKAAeaAaa~Ls~g~ng~~~er~gs~d~~~~ 584 (623)
.-|++.-..+|.-+--++.-|| ||......++.+|+
T Consensus 489 ~~q~~dL~~~a~~lE~~Iqy~n--Rfr~~~~~V~~~f~ 524 (569)
T PRK04778 489 EEETEELVENATLTEQLIQYAN--RYRSDNEEVAEALN 524 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccCCCCHHHHHHHH
Confidence 6666666777766666665555 56555555554443
No 69
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.06 E-value=12 Score=41.77 Aligned_cols=185 Identities=16% Similarity=0.208 Sum_probs=96.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhH
Q 006962 70 RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETD 149 (623)
Q Consensus 70 r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d 149 (623)
+|.+-.-+..+++.+|+..+..+++.+..-.+...++.+..+++.++...|...+.|..+....+ ...++
T Consensus 53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L----------a~~L~ 122 (420)
T COG4942 53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL----------AEQLA 122 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 35555555667777777777777777777888888888888888888888888877772222221 12221
Q ss_pred HhhHH---H--HHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHH----HHHHHHH
Q 006962 150 QSCQS---E--LQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLI----ETISLME 220 (623)
Q Consensus 150 ~~wqs---E--leavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~la----etl~lvE 220 (623)
-..++ . ..-+...++.++ .++.+.+.-+..+-..++.+-..+..+|...++.++ +--.++-
T Consensus 123 A~~r~g~~p~~~ll~~~eda~~~----------~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~ 192 (420)
T COG4942 123 ALQRSGRNPPPALLVSPEDAQRS----------VRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS 192 (420)
T ss_pred HHHhccCCCCchhhcChhhhhHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 0 000111111111 233333444444444444444444445555555541 1112222
Q ss_pred HHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHH
Q 006962 221 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASE 274 (623)
Q Consensus 221 ~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~e 274 (623)
..+.+...+......=+.+...+...|.......+.|+..-..+...+.++..+
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333333333445555566666666677777777777666665533
No 70
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.05 E-value=0.015 Score=66.94 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhHHHHhhHHHhhHHHH
Q 006962 444 LAQAVEDLKANLMDKETELQNISEENEMLK 473 (623)
Q Consensus 444 ~~~~v~~LKa~L~dke~elq~~~~ene~Lk 473 (623)
...+|..||..|.+++..+..+..+++..|
T Consensus 620 ~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 620 SSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp ------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445556666666666666666655555444
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.73 E-value=10 Score=39.57 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhH
Q 006962 172 SALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAK 251 (623)
Q Consensus 172 sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~ak 251 (623)
.++-.|+.|-.++....-=....-+-...+.++++.++..+.+..-.++.|++++...+.--..++.= .
T Consensus 7 ~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r-----------~ 75 (239)
T COG1579 7 KSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER-----------I 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 34455666666665555544455666677788888999988888888888888887765322222221 1
Q ss_pred hHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006962 252 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297 (623)
Q Consensus 252 atve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a 297 (623)
...+-.. .+++=+..|+.|..++...+-+..+||..+..|.....
T Consensus 76 ~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 76 KRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222 66677788999999999999999999998888876433
No 72
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.51 E-value=25 Score=43.36 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHH---HHHHHHHHH
Q 006962 170 LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQ---ALARETLLQ 246 (623)
Q Consensus 170 L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~---aL~~E~~~Q 246 (623)
|+..-.-|-.|+++|+.-.+-=-.--.--++..+++..++++..+.+..--.++--..+++...-+|. .-+.+-.+.
T Consensus 179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmD 258 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMD 258 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhh
Confidence 33333446667777766543211222233455578888888888877766555555555555444333 334666777
Q ss_pred HHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHH--HhHHHHHHHHhhhhh
Q 006962 247 LETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI--NLLEGLVSKLEADTS 297 (623)
Q Consensus 247 LE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~--~~LE~lvskLq~~~a 297 (623)
++--+..|+-|+.|..-+.++..-|.-.|..-|+|- .+||-.+-+++.+++
T Consensus 259 s~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~ 311 (1195)
T KOG4643|consen 259 SDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLD 311 (1195)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 777788888888888888877777776676666655 555655555554433
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.48 E-value=1.9 Score=44.67 Aligned_cols=140 Identities=25% Similarity=0.327 Sum_probs=90.2
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962 329 LEEELSSLKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 405 (623)
Q Consensus 329 Le~EL~s~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LM 405 (623)
....|..++++++.++-++.+.++++ ..+..+....|+.+-+.++....-. --.--..++..+..++.-++-+.-
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~ak~r~~ 106 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIAKERIN 106 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888887 5677778888887777764433211 112223345578888888888888
Q ss_pred chhhhhhhhhhhhhhhhhhhhh--hhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 406 DKETELQGISEENEGLHMQLDK--NLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 406 DKEtELQ~IsEENE~L~~ei~~--~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
+.+.+|..+.++-+.|..+|.. ..-..-+..+......++..|..+.. +.+.+..+-+.|+..+.
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e-------~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE-------EGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcC
Confidence 8888899888888888877751 11122233333333333333333333 56666667777776666
No 74
>PRK09039 hypothetical protein; Validated
Probab=93.20 E-value=14 Score=39.89 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=49.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHH
Q 006962 202 HLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR 281 (623)
Q Consensus 202 ~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r 281 (623)
..+|...+...++.-..|..|+.++..++.--+...+.+. .+...+.....-+..+...|+..-++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~--------------~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD--------------ASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888877765444444433 33334444444455555555555554
Q ss_pred -HHhHHHHHHHH
Q 006962 282 -INLLEGLVSKL 292 (623)
Q Consensus 282 -~~~LE~lvskL 292 (623)
+++|+...+.+
T Consensus 188 ~~~~l~~~~~~~ 199 (343)
T PRK09039 188 RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHhHHHH
Confidence 77877777777
No 75
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.16 E-value=23 Score=42.09 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=34.4
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHH
Q 006962 335 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEA 388 (623)
Q Consensus 335 s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELea 388 (623)
-.+-||++|.-.|.++|.|.+|=-.+..--++-.+-++|.+.---+++=.-++.
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawer 662 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWER 662 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHH
Confidence 457799999999999999987644444444454455555555444444444443
No 76
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.99 E-value=28 Score=42.57 Aligned_cols=103 Identities=24% Similarity=0.347 Sum_probs=67.8
Q ss_pred hhhhHHHHHHHHHHH-----------------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh-
Q 006962 71 ISELESQVSRLQEDL-----------------KKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSA- 132 (623)
Q Consensus 71 ~seLesql~q~QeeL-----------------kkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa- 132 (623)
--+|..|+.++-|.| .+.|-|+.+++-||-++.+.--+.++++...--+++++|-+-+..-.
T Consensus 226 e~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~e 305 (1243)
T KOG0971|consen 226 EEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEE 305 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446888988887755 45567888899999999888888888888888777776544433222
Q ss_pred ----hHHHHHHHHHH-HhHHhHHhhHHHHHHHhhh---hhccHHHHHHH
Q 006962 133 ----SEEARAVELQK-VSQETDQSCQSELQAIQNQ---HSIDSAALASA 173 (623)
Q Consensus 133 ----~e~sr~~Elqk-~~q~~d~~wqsEleavq~q---hs~DsaaL~sa 173 (623)
+..--|-=|.| ...+|-.+.|-|+++.+-- -..|.++|-+-
T Consensus 306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaE 354 (1243)
T KOG0971|consen 306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAE 354 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333334 6677777888888877643 33444444433
No 77
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.92 E-value=30 Score=42.64 Aligned_cols=286 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHH-HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHH
Q 006962 204 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALA-RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI 282 (623)
Q Consensus 204 ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~-~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~ 282 (623)
+|..+=+-|.+.|+.+|.=|..+..+.+-.-.=+.|= +=--..|..+..-++.|..+.+.+.+.-+++..+|+..+..+
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~ 267 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDES 267 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhH
Q 006962 283 NLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST 362 (623)
Q Consensus 283 ~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st 362 (623)
..+...+..|...+. -++.|-++|.+. +++.......+.
T Consensus 268 ~~~~~~i~ele~~l~-------------------------------------~l~~ekeq~~a~----~t~~~k~kt~le 306 (1200)
T KOG0964|consen 268 EDLKCEIKELENKLT-------------------------------------NLREEKEQLKAR----ETKISKKKTKLE 306 (1200)
T ss_pred HHHHhHHHHHHHHHH-------------------------------------HHHHHHHHHHHH----HHHHHHHhhhhh
Q ss_pred HHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhh------------
Q 006962 363 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM------------ 430 (623)
Q Consensus 363 ~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~------------ 430 (623)
|+|+ .+-+++-...-+|-..|. .|.+.++.|.+-+-.|---+-.-+.+.++-..++..|..-..
T Consensus 307 l~~k---dlq~~i~~n~q~r~~~l~-~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~ 382 (1200)
T KOG0964|consen 307 LKIK---DLQDQITGNEQQRNLALH-VLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRY 382 (1200)
T ss_pred hhhH---HHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc
Q ss_pred ------hhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHH
Q 006962 431 ------CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEA 504 (623)
Q Consensus 431 ------~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea 504 (623)
-.|..=+..++..+..-|+..|.+-.-+-+++..+..+....-.+|+ +....+.--+..-++.
T Consensus 383 sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~-----------~l~~si~e~~~r~~~~ 451 (1200)
T KOG0964|consen 383 SQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIK-----------ELESSINETKGRMEEF 451 (1200)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhhhHHHHH
Q ss_pred HHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006962 505 LMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 545 (623)
Q Consensus 505 ~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrr 545 (623)
..+.--+..+.|+.-.+---+--.=.+-+..-..++..+.+
T Consensus 452 ~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 452 DAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 78
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.89 E-value=25 Score=41.73 Aligned_cols=154 Identities=24% Similarity=0.340 Sum_probs=93.4
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHHHhh-----------------hhhhhhhHHHHhhHHHHHHHHhhhc-------c
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALEIAETKL-----------------NEGQIQSTVKIKSAFEQLEQIKHQS-------G 380 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~-----------------qEE~i~st~~i~~aye~~e~~Kses-------~ 380 (623)
-+..|+.++-+...|-.=|--.|.|+++++ |+++....-++.++-+++..+..-- .
T Consensus 339 qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~ 418 (739)
T PF07111_consen 339 QVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLE 418 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466677766667777777788888877 4677777777777777765554311 1
Q ss_pred cchHHHHHHHHhhhh-----------------------hHHHHHH--------hhcchhhhhhhhhhhhhhhhhhhhhhh
Q 006962 381 LREVELEAELQKAKS-----------------------DIEELKA--------NLMDKETELQGISEENEGLHMQLDKNL 429 (623)
Q Consensus 381 qRE~ELeaELKk~ks-----------------------dIeELKA--------~LMDKEtELQ~IsEENE~L~~ei~~~~ 429 (623)
-..++++..+.++.+ .+..|+- .-+|-..|||.+-+|-..|-+++.-..
T Consensus 419 s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa 498 (739)
T PF07111_consen 419 SQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSA 498 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 133444443333222 1112211 123778899999999998888864210
Q ss_pred h--------------------hhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006962 430 M--------------------CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478 (623)
Q Consensus 430 ~--------------------~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k 478 (623)
. +..-..|...|......+..+..+|..-+.-++....+-..|..++..
T Consensus 499 ~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~ 567 (739)
T PF07111_consen 499 RLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQ 567 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 0 112245566666666677777777777777777777777777777664
No 79
>PRK09039 hypothetical protein; Validated
Probab=92.85 E-value=13 Score=40.03 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=12.4
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHhHhH
Q 006962 226 LRESKESETQAQALARETLLQLETAKLS 253 (623)
Q Consensus 226 l~e~keSeAqa~aL~~E~~~QLE~akat 253 (623)
+.+++.-.+..+.-+..+...|+.+.+.
T Consensus 160 L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 160 LDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444445555555555433
No 80
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.76 E-value=20 Score=40.38 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=57.8
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhh
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 404 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~L 404 (623)
+.++|..|....+.+|..|+-.|..-.+..|+.-.++..+.. -+...++.+..-+..+...
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~- 335 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQE------------------SFREQPQELSQQLEPELTT- 335 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHHHhch-
Confidence 456688888888888888888887777777654444432222 1222223333333333222
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhh
Q 006962 405 MDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD 457 (623)
Q Consensus 405 MDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~d 457 (623)
|.++.....|=--+..+. ...-..+...++..+.+|..|+..|..
T Consensus 336 ---e~e~~l~~~el~~~~ee~-----~~~~s~~~~k~~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 336 ---EAELRLYYQELYHYREEL-----SRQKSPLQLKLKEKESEIQKLRNQLSA 380 (511)
T ss_pred ---HHHHHHHHHHHHHHHHHH-----HHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 444333333322222222 223356677777778888888885544
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.74 E-value=23 Score=40.88 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=24.7
Q ss_pred hhHHHHHHHhhhh---hccHHHHHHHHHHHHHHHHHHHHHHH
Q 006962 151 SCQSELQAIQNQH---SIDSAALASALNELQQLKAQFEMVAE 189 (623)
Q Consensus 151 ~wqsEleavq~qh---s~DsaaL~sal~Eiq~LK~qL~~~~e 189 (623)
.|+.++...+++- ..+..-|.-+...|.+++.|+.....
T Consensus 273 ~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~ 314 (650)
T TIGR03185 273 EIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQ 314 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444442 33444467777999999999988654
No 82
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.62 E-value=9.3 Score=44.39 Aligned_cols=194 Identities=14% Similarity=0.173 Sum_probs=106.2
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhh
Q 006962 335 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGI 414 (623)
Q Consensus 335 s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~I 414 (623)
=+...+.+||..|..+|.+++.=.....+ -..+...-....|..+...+...++++++.++.++.+
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk~~~~l--------------~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYRAQSDL--------------LMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------cccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888899999998888532222111 0112222233667788888888888888888888776
Q ss_pred hhhhhhhhh--hhhhhhhh-----hhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccc
Q 006962 415 SEENEGLHM--QLDKNLMC-----QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMN 487 (623)
Q Consensus 415 sEENE~L~~--ei~~~~~~-----~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~ 487 (623)
...-..-.. .+-..... ....+|..++..+...+.+|....-++=-.++.+..+.+.|+.+|.. +..++.
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~---e~~~~~ 340 (754)
T TIGR01005 264 KKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS---ELQKIT 340 (754)
T ss_pred HHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 432111000 00000111 33455566666666666666666666666666777777777777652 122222
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006962 488 SNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 545 (623)
Q Consensus 488 ~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrr 545 (623)
.....++..|++.+......+..+...+..-.....++..=-.-++.++.-.+.=|.|
T Consensus 341 ~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 341 KSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTN 398 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566666655556666665555555555554444444444444444444433
No 83
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.57 E-value=13 Score=44.37 Aligned_cols=113 Identities=27% Similarity=0.357 Sum_probs=59.6
Q ss_pred HhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhc
Q 006962 402 ANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKREL 481 (623)
Q Consensus 402 A~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~ 481 (623)
+.|.+...+|....-||..|..-+... ..-..+|.......+.++..|++ .|+++..||..||-++.-
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~--~~~i~~l~~~~~~~e~~~~~l~~-------~l~~~eken~~Lkye~~~--- 159 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEK--EKLIAELSEEKSQAEAEIEDLMA-------RLESTEKENSSLKYELHV--- 159 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHH---
Confidence 444444445555555666555444211 12234455555566677777777 566677777777777651
Q ss_pred cCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH-HHHHHHHHHhhHHHHHHHhhhhhc
Q 006962 482 DTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM-AEQLEAAQSANCEAEAELRRLKVQ 549 (623)
Q Consensus 482 ~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~-~EqL~aaq~a~~elEaElrrLrVQ 549 (623)
..+ -|.+-++|-+=|.+-|.-. +.+|+.+. .-.-||||-+|||.=
T Consensus 160 ---------~~k-------------eleir~~E~~~~~~~ae~a~kqhle~vk-kiakLEaEC~rLr~l 205 (769)
T PF05911_consen 160 ---------LSK-------------ELEIRNEEREYSRRAAEAASKQHLESVK-KIAKLEAECQRLRAL 205 (769)
T ss_pred ---------HHH-------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 111 1222333433332222222 24555554 235699999999974
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.85 E-value=29 Score=40.06 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=20.2
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhh--hHHHHhhHHHhhHHHHHHhc
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMD--KETELQNISEENEMLKLEIS 477 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~d--ke~elq~~~~ene~Lk~e~~ 477 (623)
..+..++..+..+++.|..+|.. -+..++.+..+-..+..++.
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555543 12344444444444444444
No 85
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.56 E-value=36 Score=40.59 Aligned_cols=94 Identities=24% Similarity=0.251 Sum_probs=63.9
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHh---hhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962 329 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIK---HQSGLREVELEAELQKAKSDIEELKANLM 405 (623)
Q Consensus 329 Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~K---ses~qRE~ELeaELKk~ksdIeELKA~LM 405 (623)
...|+..++.|+..||+.+...+.+|.++..++--.+...-+.+.... -+...|-.+|+.+|+.+..-..+-.+.|.
T Consensus 364 av~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~Ln 443 (717)
T PF09730_consen 364 AVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLN 443 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345666777777777777777777887776655555554444443332 24455778899999988888888887777
Q ss_pred chhhhhhhhhhhhhhhh
Q 006962 406 DKETELQGISEENEGLH 422 (623)
Q Consensus 406 DKEtELQ~IsEENE~L~ 422 (623)
--=.+|..++|+=-.|-
T Consensus 444 sAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 444 SAQDELVTFSEELAQLY 460 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777654443
No 86
>PF13514 AAA_27: AAA domain
Probab=91.44 E-value=43 Score=41.19 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHH------hhHHHHHHHhhhhhchHHHHHHHHHHHHhh
Q 006962 499 SAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQS------ANCEAEAELRRLKVQSDQWRKAAEAAASML 564 (623)
Q Consensus 499 ~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~------a~~elEaElrrLrVQseQWRKAAeaAaa~L 564 (623)
..-.+....+..+..+.+.-..+.+++..+|.+... +..+.+.-..+|+-..++|.. ...|..+|
T Consensus 896 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~-~~la~~lL 966 (1111)
T PF13514_consen 896 AELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAA-LRLAAELL 966 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334455566666777777777777777777766543 344445555556666788864 33444444
No 87
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.28 E-value=34 Score=39.77 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=44.8
Q ss_pred chhhHHHHHHHHHHHHHhh-------hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962 336 LKSEVGQLRSALEIAETKL-------NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 405 (623)
Q Consensus 336 ~ksEIeeLRsaLe~~Etr~-------qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LM 405 (623)
+++.++.+...|-.++.+| +|+..-+-.+|..-|+.+-..+..+..-..+....++...-...++.+..+
T Consensus 458 ~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~ 534 (581)
T KOG0995|consen 458 KIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGE 534 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555 466777777777777777777777777777777667666666665555554
No 88
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.13 E-value=7.8 Score=37.38 Aligned_cols=107 Identities=29% Similarity=0.371 Sum_probs=68.5
Q ss_pred hHHHHHhhchhhHHHHHHHHHHHHHhhh---hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhh
Q 006962 328 HLEEELSSLKSEVGQLRSALEIAETKLN---EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 404 (623)
Q Consensus 328 ~Le~EL~s~ksEIeeLRsaLe~~Etr~q---EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~L 404 (623)
+...+|+.++++-.-|.-.+..-|+.+. +++....+ ..+.++++++ .++..|..+-.+|
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~------------daEn~k~eie------~L~~el~~lt~el 68 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLIL------------DAENSKAEIE------TLEEELEELTSEL 68 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3556777777777777777776666662 22222221 2344444444 6788888888888
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHh
Q 006962 405 MDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEE 468 (623)
Q Consensus 405 MDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~e 468 (623)
=|-+.+|..++.|++.|... |.++...|.+|.....+...-|+.+..+
T Consensus 69 ~~L~~EL~~l~sEk~~L~k~----------------lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 69 NQLELELDTLRSEKENLDKE----------------LQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88889999988888755444 4455566666666666666666655555
No 89
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.97 E-value=53 Score=41.37 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHhhccCC
Q 006962 550 SDQWRKAAEAAASMLSTGN 568 (623)
Q Consensus 550 seQWRKAAeaAaa~Ls~g~ 568 (623)
.-||-.+.++..|-+..-+
T Consensus 912 hRqe~~~k~~t~ac~~e~~ 930 (1317)
T KOG0612|consen 912 HRQELTCKDCTLACLEETN 930 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3499999999988886544
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.70 E-value=33 Score=38.58 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHH
Q 006962 332 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQ 371 (623)
Q Consensus 332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~ 371 (623)
.+..++..|..+...|..-+.+..+..-.++..+..+|-+
T Consensus 88 ~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 88 DLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555555555567777788777777764
No 91
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.89 E-value=52 Score=39.57 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 006962 102 AQQDAEDSKKQLLALSSKLQES 123 (623)
Q Consensus 102 a~~eleEskkQl~e~SskLees 123 (623)
...+++....++.++....+..
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~ 251 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERL 251 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666444443
No 92
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.88 E-value=60 Score=40.28 Aligned_cols=149 Identities=21% Similarity=0.299 Sum_probs=100.2
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHH-------HHHHhh-hcccchHHHHHHHHhhhhhHHHHHHh
Q 006962 332 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQ-------LEQIKH-QSGLREVELEAELQKAKSDIEELKAN 403 (623)
Q Consensus 332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~-------~e~~Ks-es~qRE~ELeaELKk~ksdIeELKA~ 403 (623)
.|+....++..-++.|.+.|..++.=+.++. +.+.-+.+ +...+. --..-.+.+-..++....+|.+++..
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~-kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~ 756 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQSQ-KFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQ 756 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHH
Confidence 4455555666666677777776643222211 11111111 111111 11122345778899999999999999
Q ss_pred hcchhhhhhhhhhhhhhhhhhhhhhhhhh---hhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhh
Q 006962 404 LMDKETELQGISEENEGLHMQLDKNLMCQ---RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE 480 (623)
Q Consensus 404 LMDKEtELQ~IsEENE~L~~ei~~~~~~~---ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e 480 (623)
+-+++--+....++-.+|-..++.- ... +=.+|.++|+.....+.+-...+.-++.+.+.|.-|-+.|+.++...+
T Consensus 757 Ike~~~~~k~~~~~i~~lE~~~~d~-~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k 835 (1174)
T KOG0933|consen 757 IKEKERALKKCEDKISTLEKKMKDA-KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLK 835 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888632 223 335677888888888888888899999999999888888888877555
Q ss_pred cc
Q 006962 481 LD 482 (623)
Q Consensus 481 ~~ 482 (623)
..
T Consensus 836 ~~ 837 (1174)
T KOG0933|consen 836 QQ 837 (1174)
T ss_pred HH
Confidence 43
No 93
>PRK11281 hypothetical protein; Provisional
Probab=89.56 E-value=66 Score=40.28 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=19.4
Q ss_pred hhhHHHHHhhchhhHHHHHHHHHHHHHh
Q 006962 326 SKHLEEELSSLKSEVGQLRSALEIAETK 353 (623)
Q Consensus 326 ~~~Le~EL~s~ksEIeeLRsaLe~~Etr 353 (623)
...|++|+..++.++..+|-.|.....+
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l 221 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQL 221 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3447888888888777777777655444
No 94
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=58 Score=39.56 Aligned_cols=128 Identities=24% Similarity=0.327 Sum_probs=94.9
Q ss_pred hhhHHHHHhhchhhHHHHHHHHHHHHHhhh---hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHH
Q 006962 326 SKHLEEELSSLKSEVGQLRSALEIAETKLN---EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 402 (623)
Q Consensus 326 ~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q---EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA 402 (623)
..+|+-||+-++.-+.+|--.|-|.+.++. .+....| .+ +|| ..++|..|++
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~-----------------~q--~e~------~isei~qlqa 493 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVT-----------------KQ--REL------MISEIDQLQA 493 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhh-----------------hH--HHH------HHHHHHHHHH
Confidence 345778888888888888888887777663 2222222 12 222 2455666666
Q ss_pred hhcchhhhhhhhhhhhhhhhhhhhhhhh-----hhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 403 NLMDKETELQGISEENEGLHMQLDKNLM-----CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 403 ~LMDKEtELQ~IsEENE~L~~ei~~~~~-----~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.|-.--..|+.+.-|--.|+-.++..+. +.+-.+|.+.+.+.+.-+.-||..|...++|..+-..+..+++++++
T Consensus 494 rikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlk 573 (1118)
T KOG1029|consen 494 RIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLK 573 (1118)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6655556677788887788888874433 45678999999999999999999999999999999999999999998
Q ss_pred h
Q 006962 478 K 478 (623)
Q Consensus 478 k 478 (623)
+
T Consensus 574 e 574 (1118)
T KOG1029|consen 574 E 574 (1118)
T ss_pred H
Confidence 3
No 95
>PLN03188 kinesin-12 family protein; Provisional
Probab=89.49 E-value=41 Score=42.47 Aligned_cols=155 Identities=24% Similarity=0.290 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962 216 ISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 295 (623)
Q Consensus 216 l~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~ 295 (623)
+++.|.||..+. + -+.|++++.+.|++-|.-.+-|.--.-.||. ++.++ || +|..||+.--.|-.+
T Consensus 1064 islteelr~ele------s-~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~--ghar~-~e----~ya~l~ek~~~ll~~ 1129 (1320)
T PLN03188 1064 ISLAEELRTELD------A-SRALAEKQKHELDTEKRCAEELKEAMQMAME--GHARM-LE----QYADLEEKHIQLLAR 1129 (1320)
T ss_pred eechHHHHHHHH------H-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHH-HH----HHHHHHHHHHHHHHH
Confidence 556677776543 3 5678899999999999998888887777772 33322 22 566666544433321
Q ss_pred ----------------hhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh-hhhh
Q 006962 296 ----------------TSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL-NEGQ 358 (623)
Q Consensus 296 ----------------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~-qEE~ 358 (623)
-|+..+ .+.+=+| .+-+||.-||..-+ +|.+| .+||
T Consensus 1130 hr~i~egi~dvkkaaakag~kg-------------------~~~~f~~-------alaae~s~l~~ere-ker~~~~~en 1182 (1320)
T PLN03188 1130 HRRIQEGIDDVKKAAARAGVRG-------------------AESKFIN-------ALAAEISALKVERE-KERRYLRDEN 1182 (1320)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-------------------chHHHHH-------HHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 121111 1233455 44455555555444 67777 7999
Q ss_pred hhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh
Q 006962 359 IQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 426 (623)
Q Consensus 359 i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~ 426 (623)
..+-+|+|-..|-|.-. +||=.-||-+...+.--+.+-||-|- ||+.|+.+|.
T Consensus 1183 k~l~~qlrdtaeav~aa--------gellvrl~eaeea~~~a~~r~~~~eq-------e~~~~~k~~~ 1235 (1320)
T PLN03188 1183 KSLQAQLRDTAEAVQAA--------GELLVRLKEAEEALTVAQKRAMDAEQ-------EAAEAYKQID 1235 (1320)
T ss_pred HHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 99999999887777544 78888888888888878888887664 6777777664
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.89 E-value=13 Score=35.84 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=14.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhhh
Q 006962 70 RISELESQVSRLQEDLKKAKNQL 92 (623)
Q Consensus 70 r~seLesql~q~QeeLkkaKeQL 92 (623)
.+++++.++.++++++......+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERI 104 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666655555
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=65 Score=39.17 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=41.4
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhh---hcccchHHHHHHHHhhhhhHHHHHHhhcc
Q 006962 332 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH---QSGLREVELEAELQKAKSDIEELKANLMD 406 (623)
Q Consensus 332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Ks---es~qRE~ELeaELKk~ksdIeELKA~LMD 406 (623)
-+....+||.+|.+.|- +||+-+++++.+-.---.++.++.+ .-++|-.+|.+.+.+....+--||..|-.
T Consensus 480 q~e~~isei~qlqarik----E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqlde 553 (1118)
T KOG1029|consen 480 QRELMISEIDQLQARIK----ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDE 553 (1118)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888876 5666666666544433344444443 34556666666666666555555555543
No 98
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.29 E-value=58 Score=38.05 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhH-HHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962 217 SLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK-AIEAYSSIASELERSRTRINLLEGLVSKLEAD 295 (623)
Q Consensus 217 ~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~K-a~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~ 295 (623)
..+-.|+.++.+++...++...-++..--++-..++.++.|+..-.. ...-..++..+++..+.+.+.|+..+..++.+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~ 367 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAA 367 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665544444443322222233333333333332111 12223455667888888888888888888876
Q ss_pred hh
Q 006962 296 TS 297 (623)
Q Consensus 296 ~a 297 (623)
..
T Consensus 368 ~~ 369 (754)
T TIGR01005 368 SA 369 (754)
T ss_pred HH
Confidence 55
No 99
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.13 E-value=19 Score=38.26 Aligned_cols=82 Identities=23% Similarity=0.296 Sum_probs=55.4
Q ss_pred HHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHH
Q 006962 388 AELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISE 467 (623)
Q Consensus 388 aELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ 467 (623)
..|......+.+.++.|+..-+.|+.+..+=+ ..+...=..+..+|.....+|..+|..|.+.+.+++.+..
T Consensus 173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~--------~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 173 EQLDELLPKLRERKAELEEELENLKQLVEEIE--------SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666677766666666655411 1122333567778888888888888888888888888888
Q ss_pred hhHHHHHHhc
Q 006962 468 ENEMLKLEIS 477 (623)
Q Consensus 468 ene~Lk~e~~ 477 (623)
..+.+..++.
T Consensus 245 ~i~~~~~~k~ 254 (325)
T PF08317_consen 245 KIEELEEQKQ 254 (325)
T ss_pred HHHHHHHHHH
Confidence 8888777776
No 100
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.85 E-value=78 Score=38.99 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=45.6
Q ss_pred HHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHh
Q 006962 364 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK 443 (623)
Q Consensus 364 ~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~ 443 (623)
+++..|+............-..+...|..+...+..+.+.+......+.....+. ++ ..+..+ ..+..
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~f----------~~~~~~-~~~~~ 774 (1047)
T PRK10246 707 LPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQAS-VF----------DDQQAF-LAALL 774 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------CCHHHH-HHHcC
Confidence 3344444444444444444445555555555555555555554444333322111 00 011111 22234
Q ss_pred hHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHh
Q 006962 444 LAQAVEDLKANLMDKETELQNISEENEMLKLEI 476 (623)
Q Consensus 444 ~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~ 476 (623)
...++..|...+.+.+..++.+......++..+
T Consensus 775 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l 807 (1047)
T PRK10246 775 DEETLTQLEQLKQNLENQRQQAQTLVTQTAQAL 807 (1047)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655555444443333
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.19 E-value=67 Score=37.54 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=45.0
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962 329 LEEELSSLKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 405 (623)
Q Consensus 329 Le~EL~s~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LM 405 (623)
.-.+++.++.++.++-..+..+|-.| ..+|..++=.+ -.+.|.+|--|.-.-++|=+.||.
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~---------~Rs~Yt~RIlEIv~NI~KQk~eI~------- 508 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV---------NRSAYTRRILEIVKNIRKQKEEIE------- 508 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHHhHHHHHHHHH-------
Confidence 33455555556655555555555544 23333332111 145778888888888888888876
Q ss_pred chhhhhhhhhhhhhhhhhhhh
Q 006962 406 DKETELQGISEENEGLHMQLD 426 (623)
Q Consensus 406 DKEtELQ~IsEENE~L~~ei~ 426 (623)
.|...+..|+.+|+
T Consensus 509 -------KIl~DTr~lQkeiN 522 (594)
T PF05667_consen 509 -------KILSDTRELQKEIN 522 (594)
T ss_pred -------HHHHHHHHHHHHHH
Confidence 45566666777775
No 102
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=86.94 E-value=39 Score=34.61 Aligned_cols=219 Identities=19% Similarity=0.248 Sum_probs=117.9
Q ss_pred HHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhc
Q 006962 219 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 298 (623)
Q Consensus 219 vE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~ 298 (623)
++.+..++.............+..+..++..-...++.|...+.++..-...+....+....+.+.|...|..+....-.
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333334444444444555555555555555555666666666666666666666666643211
Q ss_pred cccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhh
Q 006962 299 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQ 378 (623)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kse 378 (623)
.-.-...+.. +...-....|...|..+..=+.++|.. -|.-.....+-+.+-|+.++.+|+..
T Consensus 106 l~~~~~~l~~-----------~~~~~~~~~l~~~l~ea~~mL~emr~r------~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 106 LIEQVESLNE-----------NGDQLPSEDLQRALAEAQRMLEEMRKR------DFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHhCc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000000000 000000111233333333333333322 24455566778888999999999999
Q ss_pred cccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006962 379 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK 458 (623)
Q Consensus 379 s~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk 458 (623)
...+..+.+.=+......+.+.-++|||-..-|+...+- .+..+.--..-..+|.+-
T Consensus 169 ~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~-----------------------~~ea~~ln~~n~~~l~~~ 225 (264)
T PF06008_consen 169 FQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNK-----------------------TREAEDLNRANQKNLEDL 225 (264)
T ss_pred HhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHH
Confidence 999999988877888999999999999887777663211 011111122233445555
Q ss_pred HHHHhhHHHhhHHHHHHhc
Q 006962 459 ETELQNISEENEMLKLEIS 477 (623)
Q Consensus 459 e~elq~~~~ene~Lk~e~~ 477 (623)
+...+.|.+.+......|.
T Consensus 226 ~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 226 EKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665
No 103
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=86.80 E-value=32 Score=33.51 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhHhhhhHHHHHHH
Q 006962 214 ETISLMENMKNQLRESKESETQAQAL 239 (623)
Q Consensus 214 etl~lvE~lKs~l~e~keSeAqa~aL 239 (623)
||++.|..|...=..-++|++-+..+
T Consensus 3 DT~~~v~~Le~~Gft~~QAe~i~~~l 28 (177)
T PF07798_consen 3 DTHKFVKRLEAAGFTEEQAEAIMKAL 28 (177)
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 56777777765555555555555555
No 104
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.62 E-value=31 Score=36.31 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=27.2
Q ss_pred HHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHhhhcHHHHHHHHH
Q 006962 155 ELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEA-AQTKNAESAHLELQSLKGNLIETISLME 220 (623)
Q Consensus 155 Eleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea-~al~~Ae~a~~ELe~lk~~laetl~lvE 220 (623)
++...+.....--+.|..+-..+..++.++........ ........+..++..++..+...-..++
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333344444555555555444332221 1112234444555555555544333333
No 105
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.56 E-value=1e+02 Score=39.08 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=55.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQL---SSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKV 144 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL---~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~ 144 (623)
+=+.-+.|....+++-|+..|.-| +.+...=.++...+++.++|+.++...|-.....++....+..+.-.+|.-|
T Consensus 1194 Gv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesL 1272 (1758)
T KOG0994|consen 1194 GVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESL 1272 (1758)
T ss_pred cCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHH
Confidence 345566777777888888888777 3455666778888999999999999888777777776666666555555443
No 106
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.37 E-value=3.1 Score=40.87 Aligned_cols=66 Identities=32% Similarity=0.506 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK 458 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk 458 (623)
.+|..++..+...|..|...|=.|..-++.+.+|.-.|+.+.. -++..+.++..+=.+|=..+|++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~---------~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN---------MLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777777776677766777666666666653 23444444444444444444443
No 107
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.96 E-value=35 Score=33.06 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=50.9
Q ss_pred HHHHHHhhhhh-------HHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006962 386 LEAELQKAKSD-------IEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK 458 (623)
Q Consensus 386 LeaELKk~ksd-------IeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk 458 (623)
...+||..++. |..|-+.|-.-++.+..+.-+|++-+.+ +-.+..+|..+..+|-+.
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e----------------ie~L~~el~~lt~el~~L 71 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE----------------IETLEEELEELTSELNQL 71 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence 44455555544 4444555555555555555555544433 445667788888888888
Q ss_pred HHHHhhHHHhhHHHHHHhchh
Q 006962 459 ETELQNISEENEMLKLEISKR 479 (623)
Q Consensus 459 e~elq~~~~ene~Lk~e~~k~ 479 (623)
+.+|.++..|++.|-.++.+.
T Consensus 72 ~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 72 ELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998888743
No 108
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.87 E-value=87 Score=37.54 Aligned_cols=94 Identities=22% Similarity=0.399 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh--hhhhhhhhhhHHHHH--------------------
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD--KNLMCQRESQLNNDL-------------------- 441 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~--~~~~~~ke~el~~~l-------------------- 441 (623)
.....+||+...||..-|+.=+--=.+.+++-+.|--|+-+++ +..-.++-.++.-.|
T Consensus 509 ~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq 588 (786)
T PF05483_consen 509 SDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQ 588 (786)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHH
Confidence 3456667777777776665443333344445555544444432 111111112333333
Q ss_pred -HhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 442 -RKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 442 -~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
+-+...+..|+.+...|.+-+..+-.+|..||+++.
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334455889999999999999999999999999986
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.58 E-value=35 Score=32.70 Aligned_cols=121 Identities=23% Similarity=0.310 Sum_probs=80.9
Q ss_pred hhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHH
Q 006962 395 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKL 474 (623)
Q Consensus 395 sdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~ 474 (623)
..|-.|-..+..+|.++.++.-- -.-|+.+|-++...+..++..+.+.+..... |+.|..
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K----------------~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~r 80 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKK----------------NQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNR 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHh
Confidence 33444444555556555554333 3456677778888889999988888765433 224444
Q ss_pred HhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006962 475 EISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRL 546 (623)
Q Consensus 475 e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrL 546 (623)
.|.-.| -+++.+...=.++.-||..+.--++.+-+++..+-.+.+.-+.-.++|+.-++-+
T Consensus 81 riq~LE-----------eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 81 RIQLLE-----------EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred hHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 444211 2445666666788888888888999999999999888888888888887665543
No 110
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=85.48 E-value=40 Score=34.75 Aligned_cols=143 Identities=24% Similarity=0.303 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHH-hhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962 217 SLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAY-SSIASELERSRTRINLLEGLVSKLEAD 295 (623)
Q Consensus 217 ~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~-~sl~~eLe~S~~r~~~LE~lvskLq~~ 295 (623)
-.|..+...+.+.++.-|++.+..-.+.++|+.....++-+..-...+...= ..|..+.= .+.+.||..+..++..
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al---~~~~~le~~~~~~~~~ 107 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREAL---EEKQSLEDLAKALEAE 107 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3566777777888888888888888888888887777776666555444321 22222221 3666667777766654
Q ss_pred hhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhh-----hhhhhhHH--HHhhH
Q 006962 296 TSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN-----EGQIQSTV--KIKSA 368 (623)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q-----EE~i~st~--~i~~a 368 (623)
....+ .-...|+..+..+...|.++|+-+...-.+++ +-...+.- ..-++
T Consensus 108 ~~~~~-----------------------~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa 164 (225)
T COG1842 108 LQQAE-----------------------EQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSA 164 (225)
T ss_pred HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Confidence 33222 11223444455555555555555555444442 11111111 11467
Q ss_pred HHHHHHHhhhcccchHH
Q 006962 369 FEQLEQIKHQSGLREVE 385 (623)
Q Consensus 369 ye~~e~~Kses~qRE~E 385 (623)
|..+++|+.-...+|..
T Consensus 165 ~~~fer~e~kiee~ea~ 181 (225)
T COG1842 165 MAAFERMEEKIEEREAR 181 (225)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776655555543
No 111
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.42 E-value=57 Score=35.08 Aligned_cols=84 Identities=23% Similarity=0.228 Sum_probs=54.5
Q ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHH
Q 006962 253 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE 332 (623)
Q Consensus 253 tve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~E 332 (623)
+++.|..|...+......+..-+...+.+++.|...+..|+...... ..+...+.+.+.++
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~-------------------~~~d~~eL~~lk~~ 212 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL-------------------EDCDPTELDRAKEK 212 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------------------HhCCHHHHHHHHHH
Confidence 45666666666666666777777777778888888888877643311 12234456667777
Q ss_pred HhhchhhHHHHHHHHHHHHHhhh
Q 006962 333 LSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 333 L~s~ksEIeeLRsaLe~~Etr~q 355 (623)
|.....+|+..+..|+..+.+++
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777765555443
No 112
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.75 E-value=12 Score=37.89 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=43.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS 131 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~S 131 (623)
.|+..|+.++..++.+|..+..+.. ..+...++.+..+..+..++..+....+.++....
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888887776653 55666777777777777777776666666665533
No 113
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.72 E-value=44 Score=36.10 Aligned_cols=124 Identities=18% Similarity=0.223 Sum_probs=68.4
Q ss_pred HhhchhhHHHHHHHHHHHHHhhh---hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhh
Q 006962 333 LSSLKSEVGQLRSALEIAETKLN---EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKET 409 (623)
Q Consensus 333 L~s~ksEIeeLRsaLe~~Etr~q---EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEt 409 (623)
..-+...+.+++..|..+|.+++ +++.-..+. .+-.-....|..+...+....+.+++.+.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~----------------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 236 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD----------------ERLDVERARLNELSAQLVAAQAQVMDASS 236 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC----------------cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888888774 333221110 00011122344555555555566665555
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 410 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 410 ELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.+.+... ...+ ..+ ..+.--..|..+|..+..++..|....-++--.++.+..+.+.|+.+|.
T Consensus 237 ~~~~~~~-~~~~-~~~---~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 237 KEGGSSG-KDAL-PEV---IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHhccCC-cccc-hhh---hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 5543211 1111 111 1112234566777777777777777777777777777777777877776
No 114
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.68 E-value=1.2e+02 Score=38.01 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=19.0
Q ss_pred hhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962 327 KHLEEELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 327 ~~Le~EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
.++..|.+--++||+.+|+.|.+.-.++.
T Consensus 326 ~~~~~e~~~~d~Ei~~~r~~~~~~~re~~ 354 (1074)
T KOG0250|consen 326 GELKDEVDAQDEEIEEARKDLDDLRREVN 354 (1074)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33555566677777777777776665553
No 115
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=84.32 E-value=64 Score=34.68 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=73.9
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhh
Q 006962 346 ALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 425 (623)
Q Consensus 346 aLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei 425 (623)
.||++=.-|++||..+- +.-|.-|-++|+.+|-=-|+.-+|||-+-- .|..-|
T Consensus 214 ~LMAKCR~L~qENeElG-------------~q~s~Gria~Le~eLAmQKs~seElkssq~--------------eL~dfm 266 (330)
T KOG2991|consen 214 MLMAKCRTLQQENEELG-------------HQASEGRIAELEIELAMQKSQSEELKSSQE--------------ELYDFM 266 (330)
T ss_pred HHHHHHHHHHHHHHHHH-------------hhhhcccHHHHHHHHHHHHhhHHHHHHhHH--------------HHHHHH
Confidence 35555555566666554 667889999999999999999999986531 222222
Q ss_pred hhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006962 426 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478 (623)
Q Consensus 426 ~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k 478 (623)
.+|..+...+...|--|-..|..+++++|.+...|+.++.-++-
T Consensus 267 ---------~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 267 ---------EELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred ---------HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35666677777888899999999999999999999999887763
No 116
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.01 E-value=54 Score=33.64 Aligned_cols=94 Identities=26% Similarity=0.253 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHhhhcHHHHHHHHHHHHHHhhHhhhhH-HHHHHHHHHHHHHHHH
Q 006962 173 ALNELQQLKAQFEMVAESEAAQTKNAESAH--LELQSLKGNLIETISLMENMKNQLRESKESE-TQAQALARETLLQLET 249 (623)
Q Consensus 173 al~Eiq~LK~qL~~~~esea~al~~Ae~a~--~ELe~lk~~laetl~lvE~lKs~l~e~keSe-Aqa~aL~~E~~~QLE~ 249 (623)
-..||--||+||-++ |++-++ .+|-.||+.+-++=..++.....+.++..+- ....+| +.+...|..
T Consensus 8 k~GEIsLLKqQLke~---------q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~EL-E~ce~ELqr 77 (202)
T PF06818_consen 8 KSGEISLLKQQLKES---------QAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLEL-EVCENELQR 77 (202)
T ss_pred hhhhHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH-HHhHHHHHH
Confidence 356888889998763 444444 4677777777666666666666666665432 344444 566666666
Q ss_pred hHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962 250 AKLSVEALRAEGMKAIEAYSSIASELE 276 (623)
Q Consensus 250 akatve~L~adg~Ka~e~~~sl~~eLe 276 (623)
.+..++.|+-....+...+..|+.+|.
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 666666666655555554555444444
No 117
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.94 E-value=42 Score=31.56 Aligned_cols=30 Identities=40% Similarity=0.573 Sum_probs=19.4
Q ss_pred HhhhcccchHHHHHHHHhhhhhHHHHHHhh
Q 006962 375 IKHQSGLREVELEAELQKAKSDIEELKANL 404 (623)
Q Consensus 375 ~Kses~qRE~ELeaELKk~ksdIeELKA~L 404 (623)
+++-..++-.-...++++..-+|.-||..|
T Consensus 120 lk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 120 LKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444556667788888888888766
No 118
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.40 E-value=85 Score=34.68 Aligned_cols=35 Identities=6% Similarity=0.209 Sum_probs=20.4
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhch
Q 006962 509 GLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQS 550 (623)
Q Consensus 509 ~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQs 550 (623)
..+..+++....+...+..+|..+ +..+.+..|-+
T Consensus 287 ~~~~~~l~~~~~~l~~~~~~l~~a-------~~~l~~~~I~A 321 (457)
T TIGR01000 287 AKVKQEITDLNQKLLELESKIKSL-------KEDSQKGVIKA 321 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhCCEEEC
Confidence 455666776655555555555544 45667776654
No 119
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=81.96 E-value=1.4e+02 Score=36.77 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=20.1
Q ss_pred HHHHHhhhhhHHHHHHhhcchhhhhhhh
Q 006962 387 EAELQKAKSDIEELKANLMDKETELQGI 414 (623)
Q Consensus 387 eaELKk~ksdIeELKA~LMDKEtELQ~I 414 (623)
..||.++-..+.-+++-|.|-+-+|-+|
T Consensus 416 kneL~~a~ekld~mgthl~mad~Q~s~f 443 (1265)
T KOG0976|consen 416 KNELQEALEKLDLMGTHLSMADYQLSNF 443 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence 4556677666777788888888777665
No 120
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.84 E-value=29 Score=32.65 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=19.5
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhh
Q 006962 332 ELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 332 EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
++.....++..|+..+.+-+.||+
T Consensus 62 ~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 62 ELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888889999988888886
No 121
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=81.00 E-value=1.7e+02 Score=37.34 Aligned_cols=120 Identities=20% Similarity=0.246 Sum_probs=76.4
Q ss_pred HHHHhhHhhhhHHHHHHHHHHHHHHHHH---hHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhc
Q 006962 222 MKNQLRESKESETQAQALARETLLQLET---AKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 298 (623)
Q Consensus 222 lKs~l~e~keSeAqa~aL~~E~~~QLE~---akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~ 298 (623)
+-..-..+.+.+.....+ +..+.+|.. +=.|++-|+.+..+..+.+.-++.+++-++-.+..-+.+++.++..-..
T Consensus 787 ~~~~e~~~~d~~~~~k~i-e~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e 865 (1294)
T KOG0962|consen 787 VTVLERFLKDLKLREKEI-EELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNE 865 (1294)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444554 666666665 3567799999999999999999999999999888888888888853110
Q ss_pred cccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962 299 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
.. ..............+|+..+..+..+|..+.+.+-....+++
T Consensus 866 ~k-------------~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~ 909 (1294)
T KOG0962|consen 866 LK-------------EEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQ 909 (1294)
T ss_pred HH-------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 00 111222223334444666677777777666666666666654
No 122
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.96 E-value=1.5e+02 Score=36.51 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=96.7
Q ss_pred hhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHH-----------HHHHHhhhHHHHH
Q 006962 199 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSV-----------EALRAEGMKAIEA 267 (623)
Q Consensus 199 e~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatv-----------e~L~adg~Ka~e~ 267 (623)
++-++-|+.+...|.|+++.++.-++-|.+-. .+--.+|-+++..|++-+.|. ..|..+.+++...
T Consensus 255 ~E~d~~lq~sak~ieE~m~qlk~kns~L~~El---SqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrq 331 (1265)
T KOG0976|consen 255 EEQDMDLQASAKEIEEKMRQLKAKNSVLGDEL---SQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQ 331 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777766666655432 344455555555555554444 4466666666666
Q ss_pred HhhhHHHHHHHHHHHHhHHHHHHHHhhh----hhccccccccCCCCCccchhhhhhhhhhh---hhhhHH---HHHhhch
Q 006962 268 YSSIASELERSRTRINLLEGLVSKLEAD----TSNANRNLSQNCSGDYDLGQKIKENQDTM---ESKHLE---EELSSLK 337 (623)
Q Consensus 268 ~~sl~~eLe~S~~r~~~LE~lvskLq~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~~~Le---~EL~s~k 337 (623)
.--++-+|-.++-.+..+-.....|+.. ..+++.. .+.. ...+..-++ ...+++ .+++.--
T Consensus 332 kadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i--------~e~k-~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 332 KADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSI--------QEKK-ENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666555554444444421 1111100 0000 000000000 011111 1333333
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhh---hHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHH
Q 006962 338 SEVGQLRSALEIAETKLNEGQIQ---STVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 402 (623)
Q Consensus 338 sEIeeLRsaLe~~Etr~qEE~i~---st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA 402 (623)
+-.+++|-.-+++-.+||+-... +--..--|-.+++++|..+..-++.-...+..-+.=|..+++
T Consensus 403 f~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~ 470 (1265)
T KOG0976|consen 403 FRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRA 470 (1265)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence 34455555555666666543333 333444455677888887777777666555555555666654
No 123
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.82 E-value=36 Score=32.08 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=68.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQ 150 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~ 150 (623)
+.-|.|+|++..-++--+++++...+..|..+.+|+-..-....++.+ .+.+. .
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-------------------------~~~~~-~ 71 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-------------------------LKKEV-E 71 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHH-H
Confidence 778999999999999999999988888888888777654433322211 11111 1
Q ss_pred hhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 006962 151 SCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAE 189 (623)
Q Consensus 151 ~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~e 189 (623)
.++.++..+++.|..=...|=.-..+++.|+..+.++++
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 455667777777777777788888889999988888765
No 124
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.81 E-value=64 Score=32.48 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=20.0
Q ss_pred hhcchhhhhhhhhhhhhhhhhhhhhhhh
Q 006962 403 NLMDKETELQGISEENEGLHMQLDKNLM 430 (623)
Q Consensus 403 ~LMDKEtELQ~IsEENE~L~~ei~~~~~ 430 (623)
.|.++-..|+.+..+|+.|..+|...+.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777888888888775433
No 125
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.19 E-value=75 Score=32.05 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=65.0
Q ss_pred HhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHH
Q 006962 251 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLE 330 (623)
Q Consensus 251 katve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le 330 (623)
...|..|+....+.++-+..+.-.|-.....+..+...+..|+.-+..- +. .+.+
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk----------nL------------~eRe--- 121 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK----------NL------------AERE--- 121 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------Cc------------hhHH---
Confidence 3455666666667776666666666666666666566666555432200 10 0111
Q ss_pred HHHhhchhhHHHHHHHHHHHHHhhhh--hhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchh
Q 006962 331 EELSSLKSEVGQLRSALEIAETKLNE--GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE 408 (623)
Q Consensus 331 ~EL~s~ksEIeeLRsaLe~~Etr~qE--E~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKE 408 (623)
.+-..++.+...|.+++-+.++ =+..++... | .+-=.....+..++..+++.+..+|..|.-.|.+||
T Consensus 122 ----eL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~---~---~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 122 ----ELQRKLSQLEQKLQEKEKKIQELEKQLELENKS---F---RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233344444444444444431 111111110 0 001112234557788888888888888888888887
Q ss_pred hhh
Q 006962 409 TEL 411 (623)
Q Consensus 409 tEL 411 (623)
-+|
T Consensus 192 r~L 194 (194)
T PF15619_consen 192 REL 194 (194)
T ss_pred hcC
Confidence 665
No 126
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=78.79 E-value=1.5e+02 Score=35.19 Aligned_cols=191 Identities=23% Similarity=0.266 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh----HHH-------HHHHHHHHhHHhHHhhHHHHHHHhhhhh-----
Q 006962 101 QAQQDAEDSKKQLLALSSKLQESQKQLQELSAS----EEA-------RAVELQKVSQETDQSCQSELQAIQNQHS----- 164 (623)
Q Consensus 101 ~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~----e~s-------r~~Elqk~~q~~d~~wqsEleavq~qhs----- 164 (623)
..+..++++.+-...+.+.+++.|+++.++-.. -.. .|.||... |+|=...+.|.+..++||+
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~a-q~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDA-QQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344455555555556666666777777766554 111 23444433 4566677888888888854
Q ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHH
Q 006962 165 ------IDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAH-LELQSLKGNLIETISLMENMKNQLRESKESETQAQ 237 (623)
Q Consensus 165 ------~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~-~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~ 237 (623)
.|+.++-.+++-.+++-.+|.+-....-.++.+....+ ++|..+...+..--+.+|.|+.++.. +
T Consensus 272 ~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~--------~ 343 (629)
T KOG0963|consen 272 KKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS--------R 343 (629)
T ss_pred hhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------h
Confidence 45666777777777777777776666666666666555 46777766665555566666555432 2
Q ss_pred HHHHHHHHHHHHh-------------H----hHHHHHHHhhh-HHHHH--------------HhhhHHHHHHHHHHHHhH
Q 006962 238 ALARETLLQLETA-------------K----LSVEALRAEGM-KAIEA--------------YSSIASELERSRTRINLL 285 (623)
Q Consensus 238 aL~~E~~~QLE~a-------------k----atve~L~adg~-Ka~e~--------------~~sl~~eLe~S~~r~~~L 285 (623)
+.+++.+..|-.- . .+.++|..+-. ++..+ +..+..--+++++.+.++
T Consensus 344 sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ 423 (629)
T KOG0963|consen 344 SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQ 423 (629)
T ss_pred ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHH
Confidence 3334433333211 1 12233333222 23333 333333346677778888
Q ss_pred HHHHHHHhhhhhccc
Q 006962 286 EGLVSKLEADTSNAN 300 (623)
Q Consensus 286 E~lvskLq~~~a~~~ 300 (623)
.+.+.+|..|.....
T Consensus 424 ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 424 KELIAKLEQDLLKVQ 438 (629)
T ss_pred HHHHHHHHhhHhhcc
Confidence 888888888766554
No 127
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.63 E-value=37 Score=36.33 Aligned_cols=121 Identities=25% Similarity=0.301 Sum_probs=72.6
Q ss_pred HHHHHhhH---HHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHH
Q 006962 438 NNDLRKLA---QAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEE 514 (623)
Q Consensus 438 ~~~l~~~~---~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee 514 (623)
..-|.|++ ..|..|+..|-.+..+|+.-..+.+.|-.+|.... .++...-..+...|..+..+...+.+.
T Consensus 4 ~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~-------~~a~~~~~~~~~ee~~~~~~~~ei~~~ 76 (344)
T PF12777_consen 4 ENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQ-------EEAEKKKAIVEEEEEEAEKQAKEIEEI 76 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 58999999999999999999999998887775211 011111112333333333444444444
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhHHHH----HHHhhhhhchHHHHHHHHHHHHhhc
Q 006962 515 ADKSNRRAARMAEQLEAAQSANCEAE----AELRRLKVQSDQWRKAAEAAASMLS 565 (623)
Q Consensus 515 ~~~s~~~~ar~~EqL~aaq~a~~elE----aElrrLrVQseQWRKAAeaAaa~Ls 565 (623)
.+......+.+.-.|++|+.|-..+. .|||.++.=..-=+...+|..-+|+
T Consensus 77 ~~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~ 131 (344)
T PF12777_consen 77 KEEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLG 131 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHh
Confidence 45555666666666777766544432 5888887666666777777777773
No 128
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.46 E-value=31 Score=38.89 Aligned_cols=64 Identities=34% Similarity=0.389 Sum_probs=50.8
Q ss_pred HHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 398 EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 398 eELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
-++++.|.|-+++|+. .-++.+.+-+++-.+..+-..++|.|-.+|.+|+-|.+||-.|.-+.-
T Consensus 9 s~~dqr~~~~~~~laq----------------~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQ----------------CEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred hhhhhHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777765 234557788888888999999999999999999999999999865543
No 129
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.38 E-value=1.3e+02 Score=34.25 Aligned_cols=72 Identities=31% Similarity=0.353 Sum_probs=46.6
Q ss_pred HHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCC---ccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHH
Q 006962 450 DLKANLMDKETELQNISEENEMLKLEISKRELDTP---NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMA 526 (623)
Q Consensus 450 ~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~---~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~ 526 (623)
+|--=|-.||.|||.+..|...||-++...--++. ..|-.+-.+++-||+ ++-.-..|++
T Consensus 509 ELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKa-----------------kadcdIsrLK 571 (593)
T KOG4807|consen 509 ELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKA-----------------KADCDISRLK 571 (593)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH-----------------hhhccHHHHH
Confidence 34445678999999999999999999974333221 122233334444542 2344567889
Q ss_pred HHHHHHHHhhHH
Q 006962 527 EQLEAAQSANCE 538 (623)
Q Consensus 527 EqL~aaq~a~~e 538 (623)
|||.+|-+|-.+
T Consensus 572 EqLkaAteALgE 583 (593)
T KOG4807|consen 572 EQLKAATEALGE 583 (593)
T ss_pred HHHHHHHHHhcc
Confidence 999888776544
No 130
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.90 E-value=62 Score=34.95 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=21.3
Q ss_pred hhhccHHH-HHHHHHHHHHHHHHHHHHHHH
Q 006962 162 QHSIDSAA-LASALNELQQLKAQFEMVAES 190 (623)
Q Consensus 162 qhs~Dsaa-L~sal~Eiq~LK~qL~~~~es 190 (623)
||-+.+.. |-.|--||++||+=++.++.+
T Consensus 110 CHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 110 CHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555544 888999999999888776554
No 131
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.74 E-value=1.3e+02 Score=33.34 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=11.6
Q ss_pred HHHHhhhHHHHHHHHHHHHhH
Q 006962 265 IEAYSSIASELERSRTRINLL 285 (623)
Q Consensus 265 ~e~~~sl~~eLe~S~~r~~~L 285 (623)
...|..|.-+.+..+..|..|
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l 374 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQL 374 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666555553
No 132
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.42 E-value=8.7 Score=37.81 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 425 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei 425 (623)
+++...|-.+...+..|.+.+..+...|..+..++..|.-+|
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~ 132 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI 132 (194)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544444444443333
No 133
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.18 E-value=1.6e+02 Score=33.69 Aligned_cols=196 Identities=22% Similarity=0.222 Sum_probs=95.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALS------SKLQESQKQLQELSASEEARAVELQKV 144 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~S------skLeesQkQ~~e~Sa~e~sr~~Elqk~ 144 (623)
+.++.....++..+++.++.+|............+++..+-|+.++. -+.++...++..++-++ ++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e--------~i 227 (563)
T TIGR00634 156 ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLE--------KL 227 (563)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHH--------HH
Confidence 45666677777777777777776666666667777777777766665 12222222222222222 11
Q ss_pred hHHhHHhhHHHHHHHhhh----h-hccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhc-------
Q 006962 145 SQETDQSCQSELQAIQNQ----H-SIDSAALASALNELQQL-KAQFEMVAESEAAQTKNAESAHLELQSLKGN------- 211 (623)
Q Consensus 145 ~q~~d~~wqsEleavq~q----h-s~DsaaL~sal~Eiq~L-K~qL~~~~esea~al~~Ae~a~~ELe~lk~~------- 211 (623)
.+-...+ +...... . ++ ...|..+...++.+ -..+....+.=..+.-..+++..+|......
T Consensus 228 ~~~~~~~----~~~L~~~~~~~~~~~-~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~ 302 (563)
T TIGR00634 228 RELSQNA----LAALRGDVDVQEGSL-LEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPER 302 (563)
T ss_pred HHHHHHH----HHHHhCCccccccCH-HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 1111100 1111111 0 11 12233333333332 2233333333333333344444444333333
Q ss_pred ---HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHH---HHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHH
Q 006962 212 ---LIETISLMENMKNQLRESKESETQAQALARETLLQL---ETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI 282 (623)
Q Consensus 212 ---laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QL---E~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~ 282 (623)
+.+.+..+..++..-.. +-........++..+| +.....++.|..+..++...|..+...|-..|..+
T Consensus 303 L~ele~RL~~l~~LkrKyg~---s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGA---SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444444442 2223333334444444 34456778888999999999998888888776554
No 134
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.28 E-value=90 Score=30.48 Aligned_cols=82 Identities=23% Similarity=0.400 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
..+..+..+++.+|+.|+..|-+- -..|+.+++-.+... -.++..+....+..|.++...+ ++++.
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~e----------i~~l~a~~klD~n~e-K~~~r~e~~~~~~ki~e~~~ki---~~ei~ 141 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREE----------INKLRAEVKLDLNLE-KGRIREEQAKQELKIQELNNKI---DTEIA 141 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 456777778888888888776542 222233332211111 1245555555556666666544 55677
Q ss_pred hHHHhhHHHHHHhchh
Q 006962 464 NISEENEMLKLEISKR 479 (623)
Q Consensus 464 ~~~~ene~Lk~e~~k~ 479 (623)
.+..+.|.+|+++=++
T Consensus 142 ~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 142 NLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777778777654
No 135
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=74.15 E-value=1.4e+02 Score=32.61 Aligned_cols=229 Identities=23% Similarity=0.275 Sum_probs=121.2
Q ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHH
Q 006962 253 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE 332 (623)
Q Consensus 253 tve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~E 332 (623)
|-+.|+.-...+...++.|+.+|+--+.+++.|...+.+|........ ...+.-++ -..|.|=-.
T Consensus 21 t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~-----------~~aEqEEE----~isN~LlKk 85 (310)
T PF09755_consen 21 TREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ-----------AKAEQEEE----FISNTLLKK 85 (310)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH----HHHHHHHHH
Confidence 336666677777777889999999999999999999999987554222 11112122 245555556
Q ss_pred HhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHH----HHhhhhhHHHHHHhhcchh
Q 006962 333 LSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAE----LQKAKSDIEELKANLMDKE 408 (623)
Q Consensus 333 L~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaE----LKk~ksdIeELKA~LMDKE 408 (623)
|..++.|.+.|=-+++. -||+.--+|.-+ |.++..+-..-|.-|+.+ ..++...|..|.+..-.+.
T Consensus 86 l~~l~keKe~L~~~~e~-----EEE~ltn~L~rk-----l~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q 155 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQ-----EEEFLTNDLSRK-----LNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQ 155 (310)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 66666666655333331 255555554433 556666655555555543 3344455555544444444
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccc
Q 006962 409 TELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLA-QAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMN 487 (623)
Q Consensus 409 tELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~-~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~ 487 (623)
++|-.+..|--. |+..|..=. .-|+.|-. ....+..++..|...|.+.-+... -+
T Consensus 156 ~~le~Lr~EKVd----------------lEn~LE~EQE~lvN~L~K-------qm~~l~~eKr~Lq~~l~~~~s~~~-s~ 211 (310)
T PF09755_consen 156 EELERLRREKVD----------------LENTLEQEQEALVNRLWK-------QMDKLEAEKRRLQEKLEQPVSAPP-SP 211 (310)
T ss_pred HHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHccccCCCC-Cc
Confidence 444433222111 111111111 12333333 344467777778877875433322 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 006962 488 SNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE 538 (623)
Q Consensus 488 ~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~e 538 (623)
...+- . +-.-+.. ..++-++..-..-++|+..||-+++....+
T Consensus 212 ~d~~~-~----~~~~Dt~---e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~ 254 (310)
T PF09755_consen 212 RDTVN-V----SEENDTA---ERLSSHIRSLRQEVSRLRQQLAASQQEHSE 254 (310)
T ss_pred chHHh-h----cccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22110 0 0000001 123344555555678899999988876554
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.97 E-value=77 Score=29.57 Aligned_cols=119 Identities=27% Similarity=0.340 Sum_probs=60.7
Q ss_pred HHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHH
Q 006962 387 EAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS 466 (623)
Q Consensus 387 eaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~ 466 (623)
..++..+.+++..++...-|-+..++.+.++.+....-.... +.-...+|.+--++|..|.+ ...+++.+.
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~A-----q~~YE~El~~Ha~~~~~L~~----lr~e~~~~~ 72 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEA-----QQKYERELVKHAEDIKELQQ----LREELQELQ 72 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHH----HHHHHHHHH
Confidence 456777777788888888888888888777666554444322 22344555554444443333 111222232
Q ss_pred HhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHH
Q 006962 467 EENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQ 528 (623)
Q Consensus 467 ~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~Eq 528 (623)
.+...|+.++. .+...+. ..+..--..=..+..|++....|..-|..|
T Consensus 73 ~~~~~l~~~~~-----------~a~~~l~---~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 73 QEINELKAEAE-----------SAKAELE---ESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHH-----------HHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332222 1111111 122223333455667777777777766654
No 137
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=73.77 E-value=1.7e+02 Score=33.55 Aligned_cols=206 Identities=24% Similarity=0.313 Sum_probs=116.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------h---hh----------hhhHHHHHHhhhcH----HHHHHHHH
Q 006962 165 IDSAALASALNELQQLKAQFEMVAESEAAQ-T------K---NA----------ESAHLELQSLKGNL----IETISLME 220 (623)
Q Consensus 165 ~DsaaL~sal~Eiq~LK~qL~~~~esea~a-l------~---~A----------e~a~~ELe~lk~~l----aetl~lvE 220 (623)
.|+.-=..-+.|||.||.||.--.++-..- . . +. +....+|+.-+..- ++-+++.|
T Consensus 219 ~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLte 298 (488)
T PF06548_consen 219 FDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTE 298 (488)
T ss_pred cCcchHHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHH
Confidence 444444455789999999998433322111 0 0 11 11123444333332 34467777
Q ss_pred HHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh-----
Q 006962 221 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD----- 295 (623)
Q Consensus 221 ~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~----- 295 (623)
.||..+...+ .+++.+.+.|+.-|.-.+-|.--.-.++... .++ || +|..|++---.|-..
T Consensus 299 eLR~dle~~r-------~~aek~~~EL~~Ek~c~eEL~~al~~A~~Gh--aR~-lE----qYadLqEk~~~Ll~~Hr~i~ 364 (488)
T PF06548_consen 299 ELRVDLESSR-------SLAEKLEMELDSEKKCTEELDDALQRAMEGH--ARM-LE----QYADLQEKHNDLLARHRRIM 364 (488)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHH-HH----HHHHHHHHHHHHHHHHHHHH
Confidence 7777654432 4556677777777766666665555555322 111 11 455555443333211
Q ss_pred -----------hhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh-hhhhhhhHH
Q 006962 296 -----------TSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL-NEGQIQSTV 363 (623)
Q Consensus 296 -----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~-qEE~i~st~ 363 (623)
-|+.. . .+.+-+| ++-+||.-||..-+ +|.+| .+||..+-+
T Consensus 365 egI~dVKkaAakAg~k------------------G-~~~rF~~-------slaaEiSalr~erE-kEr~~l~~eNk~L~~ 417 (488)
T PF06548_consen 365 EGIEDVKKAAAKAGVK------------------G-AESRFIN-------SLAAEISALRAERE-KERRFLKDENKGLQI 417 (488)
T ss_pred HHHHHHHHHHHHhccc------------------c-chHHHHH-------HHHHHHHHHHHHHH-HHHHHHHHHhHHHHH
Confidence 11111 1 1233455 44455555555433 56666 689999999
Q ss_pred HHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh
Q 006962 364 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 426 (623)
Q Consensus 364 ~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~ 426 (623)
|++...|-|--. +||=.-|+.+...+.--..+-|+-| .||+.++.+|.
T Consensus 418 QLrDTAEAVqAa--------gEllvrl~eaeea~~~a~~r~~~~e-------qe~ek~~kqie 465 (488)
T PF06548_consen 418 QLRDTAEAVQAA--------GELLVRLREAEEAASVAQERAMDAE-------QENEKAKKQIE 465 (488)
T ss_pred HHHhHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 999777766443 6787888888877777777777655 46787777775
No 138
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=73.65 E-value=68 Score=35.23 Aligned_cols=110 Identities=24% Similarity=0.363 Sum_probs=71.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQ 150 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~ 150 (623)
..+..++|..++.|+.++-+.|.+-| +..-..++..-.+...+..+|.+++.+.-..|..=..+-.+|.+|+.+++.
T Consensus 236 ~~~~~~~L~kl~~~i~~~lekI~sRE---k~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 236 LPETKSQLDKLQQDISKTLEKIESRE---KYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888777775544 556667777777777777777777777777777777777777777765443
Q ss_pred hhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Q 006962 151 SCQSELQAIQNQHSIDSAALASALNELQQLKAQFE 185 (623)
Q Consensus 151 ~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~ 185 (623)
. +.+++ -+..--.|.+-|+.-=.=|.+||.++.
T Consensus 313 v-K~eme-erg~~mtD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 313 V-KQEME-ERGSSMTDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred H-HHHHH-HhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 11111 122234455556666666666666654
No 139
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=73.55 E-value=1.8e+02 Score=33.54 Aligned_cols=411 Identities=20% Similarity=0.249 Sum_probs=210.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhH
Q 006962 70 RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETD 149 (623)
Q Consensus 70 r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d 149 (623)
.+++++.++-.+.+.+.+-+ + .+|...+.+...++..+...+......+.++-.+|..--.++..+... =
T Consensus 76 ~~~~ie~~L~~ae~~~~~~r--f-------~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~-y 145 (560)
T PF06160_consen 76 QLPEIEEQLFEAEEYADKYR--F-------KKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEK-Y 145 (560)
T ss_pred hhHHHHHHHHHHHHHHhccc--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 35566666666655543222 2 445566666666666666666666666666666666655555555432 3
Q ss_pred HhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHh
Q 006962 150 QSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRES 229 (623)
Q Consensus 150 ~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~ 229 (623)
+..+..+-+-+..-..-...|..-+..|+..=.+......+ +-=..|.--|..++..+..--..|+.+-..+.+|
T Consensus 146 ~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~-----GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l 220 (560)
T PF06160_consen 146 RELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTEN-----GDYLEAREILEKLKEETDELEEIMEDIPKLYKEL 220 (560)
T ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555555555555555556666666666665555543331 1112233344444444444444455555544444
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCC
Q 006962 230 KESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSG 309 (623)
Q Consensus 230 keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~ 309 (623)
. ..+-.||+.-+.....+..+|-.+.. -.+..++.+-+.++..+-..+..|+.+-+....
T Consensus 221 ~----------~~~P~ql~eL~~gy~~m~~~gy~l~~--~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~-------- 280 (560)
T PF06160_consen 221 Q----------KEFPDQLEELKEGYREMEEEGYYLEH--LDIEEEIEQIEEQLEEALALLKNLELDEVEEEN-------- 280 (560)
T ss_pred H----------HHhHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH--------
Confidence 4 44556666666677777777754442 334555555555555555555555543331110
Q ss_pred CccchhhhhhhhhhhhhhhH----HHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHH
Q 006962 310 DYDLGQKIKENQDTMESKHL----EEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVE 385 (623)
Q Consensus 310 ~~~~~~~~~~~~~~~e~~~L----e~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~E 385 (623)
.. -...+++| +.|+ .++..|.+....+...=..+.+.+..+. ..+++++.-|.--+.|
T Consensus 281 -----~~-----i~~~Id~lYd~le~E~-~Ak~~V~~~~~~l~~~l~~~~~~~~~l~-------~e~~~v~~sY~L~~~e 342 (560)
T PF06160_consen 281 -----EE-----IEERIDQLYDILEKEV-EAKKYVEKNLKELYEYLEHAKEQNKELK-------EELERVSQSYTLNHNE 342 (560)
T ss_pred -----HH-----HHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCCCchH
Confidence 00 01112222 2222 2445555555555444444444444333 3456777777666655
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhh--hhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM--CQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~--~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
+.. .+.+...|..|...+.+-...+ +++..--+.|...+. .+.-.++..+.....+.+..|...-.+--..|.
T Consensus 343 ~~~-~~~l~~~l~~l~~~~~~~~~~i----~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~ 417 (560)
T PF06160_consen 343 LEI-VRELEKQLKELEKRYEDLEERI----EEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQ 417 (560)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHH----HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2344444444444443222221 222222222221111 112234444444455555555555444455566
Q ss_pred hHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 006962 464 NISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAEL 543 (623)
Q Consensus 464 ~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaEl 543 (623)
.+....-..|..+.+ .+.+.+++.-......+ ...+..+...++..-=+...|..+|+-++..-..+..+.
T Consensus 418 ~~~~~l~~ikR~lek--~nLPGlp~~y~~~~~~~-------~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t 488 (560)
T PF06160_consen 418 KLKQKLREIKRRLEK--SNLPGLPEDYLDYFFDV-------SDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT 488 (560)
T ss_pred HHHHHHHHHHHHHHH--cCCCCCCHHHHHHHHHH-------HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666663 34455666655455333 355666677777777777777777777776665555554
Q ss_pred hhhh
Q 006962 544 RRLK 547 (623)
Q Consensus 544 rrLr 547 (623)
-.|-
T Consensus 489 ~~li 492 (560)
T PF06160_consen 489 EELI 492 (560)
T ss_pred HHHH
Confidence 4443
No 140
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=73.13 E-value=1.1e+02 Score=30.88 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=20.9
Q ss_pred HHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 006962 220 ENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRA 259 (623)
Q Consensus 220 E~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~a 259 (623)
..|+..+...+.+-|++.+..-.+..++......+.-+..
T Consensus 34 rem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555544443
No 141
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=72.90 E-value=81 Score=33.22 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHhHH---HHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHH
Q 006962 241 RETLLQLETAKLSV---EALRAEGMKAIEAYSSIASELERSRTRINLLEG 287 (623)
Q Consensus 241 ~E~~~QLE~akatv---e~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~ 287 (623)
.....+++.++.+. ..|...|.-....|......+..+++.+..++.
T Consensus 124 ~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~ 173 (346)
T PRK10476 124 ERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALL 173 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333 445666666666666666666666665555433
No 142
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=72.61 E-value=1.6e+02 Score=32.57 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 006962 103 QQDAEDSKKQLLALSSKLQESQ 124 (623)
Q Consensus 103 ~~eleEskkQl~e~SskLeesQ 124 (623)
.+++.+.+.++.++..+|.+.+
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 143
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.27 E-value=1.3e+02 Score=31.60 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 006962 522 AARMAEQLEAAQSANCEAEAELRRLKV 548 (623)
Q Consensus 522 ~ar~~EqL~aaq~a~~elEaElrrLrV 548 (623)
...+..++..+++....++..|.+..|
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~~~i 274 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQRLII 274 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcEE
Confidence 344455555555555566666666544
No 144
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.11 E-value=2.3e+02 Score=34.26 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=36.0
Q ss_pred HhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHH
Q 006962 144 VSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMK 223 (623)
Q Consensus 144 ~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lK 223 (623)
+.+.+....+..++..+.....+..........+++++..+......-.............+..+...+.+....+..+.
T Consensus 358 ~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~ 437 (908)
T COG0419 358 LLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLE 437 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444434444444445555555555554444444444444444444444444444333333333
Q ss_pred H
Q 006962 224 N 224 (623)
Q Consensus 224 s 224 (623)
.
T Consensus 438 ~ 438 (908)
T COG0419 438 E 438 (908)
T ss_pred H
Confidence 3
No 145
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.57 E-value=31 Score=29.17 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 006962 80 RLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQEL 130 (623)
Q Consensus 80 q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~ 130 (623)
.+|++|.++|.-. ..+...|.+|.++-.++..+++..++++.++
T Consensus 15 ~~~eEL~kvk~~n-------~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 15 AIQEELTKVKSAN-------LAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888888777 7778888888888888888888888877653
No 146
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.02 E-value=2.2e+02 Score=33.59 Aligned_cols=116 Identities=31% Similarity=0.408 Sum_probs=65.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHhhhhHHHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSS---SESWKQQAQQDAEDSKKQLLALSSKLQES---QKQLQELSASEEARAVELQ 142 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~---sE~~K~~a~~eleEskkQl~e~SskLees---QkQ~~e~Sa~e~sr~~Elq 142 (623)
.||.+||.+|..++..+......--. ++.. .+.+.+++..++.+..+..+|++- ..+++....--+.|+.|++
T Consensus 50 ~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E-~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE 128 (617)
T PF15070_consen 50 SRVQELERSLSELKNQMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELE 128 (617)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766655544432211111 1222 356667777777777777777663 3455555555567788877
Q ss_pred HHhHHhHH---hhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 006962 143 KVSQETDQ---SCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAE 189 (623)
Q Consensus 143 k~~q~~d~---~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~e 189 (623)
+..++... ...+=|+.++ .|-+++.-|++--..||.||...-+
T Consensus 129 ~~le~~~e~~~D~~kLLe~lq----sdk~t~SRAlsQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 129 EELERLQEQQEDRQKLLEQLQ----SDKATASRALSQNRELKEQLAELQD 174 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhc----ccchHHHHHHHhHHHHHHHHHHHHH
Confidence 64333221 1222233333 3444567777777889988887654
No 147
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.29 E-value=2.1e+02 Score=32.94 Aligned_cols=66 Identities=26% Similarity=0.323 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQK 143 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk 143 (623)
+.++++.+..+.++.+...+.| .....-=++-+.....+-.+.+.++|.+...+-.--.++..|++
T Consensus 107 ~~~~~~~l~~~e~~~~~i~~~l-------~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~ 172 (569)
T PRK04778 107 INEIESLLDLIEEDIEQILEEL-------QELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEK 172 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHH
Confidence 5555555555555555555555 22332223334444455555666666666666555555555444
No 148
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=69.72 E-value=1.1e+02 Score=29.71 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=68.0
Q ss_pred HHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhh
Q 006962 242 ETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQ 321 (623)
Q Consensus 242 E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 321 (623)
....+|..+...|++|..+-.++.-.|++-+++|+++...|.+ ..+.++. -+.+.|...|
T Consensus 12 ~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~~--------~~a~~P~~~~---------- 71 (136)
T PF11570_consen 12 AARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE--AEIKQDE--------FFANNPPHEY---------- 71 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCC--------CCTT-TTSSC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcccc--------cccCCCcccc----------
Confidence 3456788888999999999999999999999999999999998 3444333 1222233332
Q ss_pred hhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962 322 DTMESKHLEEELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 322 ~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
...+..++.++.-+|.+=...|.++++++.
T Consensus 72 ----~~~wqlkvr~a~~dv~nkq~~l~AA~~~l~ 101 (136)
T PF11570_consen 72 ----GRGWQLKVRRAQKDVQNKQNKLKAAQKELN 101 (136)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122446777889999999999999999984
No 149
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.53 E-value=84 Score=37.52 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=12.4
Q ss_pred HHhhHHHHHHHhhhh
Q 006962 149 DQSCQSELQAIQNQH 163 (623)
Q Consensus 149 d~~wqsEleavq~qh 163 (623)
|+.|.+||+.++.+.
T Consensus 634 Er~~~~EL~~~~~~l 648 (717)
T PF10168_consen 634 EREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788889998888874
No 150
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.85 E-value=1.5e+02 Score=30.75 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhh
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSS 95 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~s 95 (623)
-.+|+-+|.|++++.+++...|.-+
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~ 31 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEES 31 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888877333
No 151
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.71 E-value=1e+02 Score=28.78 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
++.-..|..++.++..++..+-.-.+++..+.......... ...+-..+..+|.+++. .+.
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s------------w~~qk~~le~e~~~~~~-------r~~ 115 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS------------WEEQKEQLEKELSELEQ-------RIE 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHH-------HHH
Confidence 44555555666666655555554444444443333322222 22223333444444444 555
Q ss_pred hHHHhhHHHHHHhc
Q 006962 464 NISEENEMLKLEIS 477 (623)
Q Consensus 464 ~~~~ene~Lk~e~~ 477 (623)
.|...|..|=.+|.
T Consensus 116 dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 116 DLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHh
Confidence 56778888888775
No 152
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=68.17 E-value=3.5e+02 Score=34.70 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=55.6
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHH--HHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHH
Q 006962 201 AHLELQSLKGNLIETISLMENMKNQLRESKESETQ--AQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS 278 (623)
Q Consensus 201 a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAq--a~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S 278 (623)
+..++..+...+.....-++.++..+.+++.+.+- +..+ .++..++......++...........-+.++.-+++..
T Consensus 295 ~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL-~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~ 373 (1353)
T TIGR02680 295 AREEERELDARTEALEREADALRTRLEALQGSPAYQDAEEL-ERARADAEALQAAAADARQAIREAESRLEEERRRLDEE 373 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445556666666666666643 4555 45556666665566555555566666677777777777
Q ss_pred HHHHHhHHHHHHHHhhhhh
Q 006962 279 RTRINLLEGLVSKLEADTS 297 (623)
Q Consensus 279 ~~r~~~LE~lvskLq~~~a 297 (623)
..++..++..+......+.
T Consensus 374 ~~r~~~~~~~l~~~~~el~ 392 (1353)
T TIGR02680 374 AGRLDDAERELRAAREQLA 392 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766666555554444333
No 153
>PRK10698 phage shock protein PspA; Provisional
Probab=67.71 E-value=1.5e+02 Score=30.31 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=30.2
Q ss_pred hHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchH
Q 006962 328 HLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREV 384 (623)
Q Consensus 328 ~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ 384 (623)
.|+..+..++..-..|.+..-.++++.+=-.....+.+-+++..++++..--.+-|+
T Consensus 124 ~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea 180 (222)
T PRK10698 124 ELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 355555566666666666666777666433333344445555555554443333333
No 154
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.84 E-value=27 Score=35.60 Aligned_cols=95 Identities=22% Similarity=0.262 Sum_probs=59.2
Q ss_pred ccCCCCCCCCCCccCCCCc-hhhhHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHH-------------
Q 006962 52 VIDRRSPRSPVSERKRPSR-ISELESQVSRLQEDLKKA-KNQLSSSESWKQQAQQDAEDSKKQLLAL------------- 116 (623)
Q Consensus 52 v~dRrspr~p~~ekKr~~r-~seLesql~q~QeeLkka-KeQL~~sE~~K~~a~~eleEskkQl~e~------------- 116 (623)
-+|=.+|+..--+..|..| +.+|+..+..++...... ..-=....--|.+..+=|+==+.|+.++
T Consensus 85 gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~ 164 (195)
T PF12761_consen 85 GTDFSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKS 164 (195)
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHH
Confidence 3444445555556666655 999999999999888762 0000111122344444444444444443
Q ss_pred -hHHHHHHHHHHHHhhhhHHHHHHHHHHHhH
Q 006962 117 -SSKLQESQKQLQELSASEEARAVELQKVSQ 146 (623)
Q Consensus 117 -SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q 146 (623)
..-|+-+..|...+-.-+..|=.||++|.|
T Consensus 165 v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 165 VREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366777889999999999999999888754
No 155
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.70 E-value=1.9e+02 Score=33.14 Aligned_cols=48 Identities=25% Similarity=0.258 Sum_probs=35.2
Q ss_pred HHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q 006962 192 AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQAL 239 (623)
Q Consensus 192 a~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL 239 (623)
.....+-..++-+|--|+..|.+++.-||++|....-++-+.+.|.+-
T Consensus 27 ~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~a 74 (542)
T KOG0993|consen 27 KRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSA 74 (542)
T ss_pred HhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 344455556667888899999999999999998877766665555443
No 156
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.17 E-value=1.3e+02 Score=31.28 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=48.2
Q ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 006962 254 VEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEEL 333 (623)
Q Consensus 254 ve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL 333 (623)
|.-++.+...+..++....-+|-+-...++.||.++..+...... ....+..++.|+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~-----------------------~~~~i~r~~eey 90 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK-----------------------RQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 344444555555566666666777777777888888877754221 123556688899
Q ss_pred hhchhhHHHHHHH-HH
Q 006962 334 SSLKSEVGQLRSA-LE 348 (623)
Q Consensus 334 ~s~ksEIeeLRsa-Le 348 (623)
..++.+|.++|.. |-
T Consensus 91 ~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 91 KPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999887 44
No 157
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.11 E-value=1.6e+02 Score=29.70 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHhhH
Q 006962 74 LESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQ 153 (623)
Q Consensus 74 Lesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~wq 153 (623)
|.--+..+.++|.+++..++..-+.++.+..++.+.+..+.....+-+.+-+.=.++-| +..-.+-...+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLA----------r~Al~~k~~~~ 98 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLA----------RAALIEKQKAQ 98 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----------HHHHHHHHHHH
Confidence 55556788889999999998888888888888888888877777666554332222221 11122334445
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh----hhcHHHHHHHHHHHHHHhhHh
Q 006962 154 SELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSL----KGNLIETISLMENMKNQLRES 229 (623)
Q Consensus 154 sEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~l----k~~laetl~lvE~lKs~l~e~ 229 (623)
..+...+.++..-...+...-.-|..|+.++.++..-+..-......|+++...- ...+..+...++.|+..+...
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ 178 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDEL 178 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence 5566666666666666777778888888888887666554444444444433221 123466677777777775444
Q ss_pred h
Q 006962 230 K 230 (623)
Q Consensus 230 k 230 (623)
+
T Consensus 179 e 179 (219)
T TIGR02977 179 E 179 (219)
T ss_pred H
Confidence 4
No 158
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.01 E-value=3.3e+02 Score=33.22 Aligned_cols=150 Identities=18% Similarity=0.206 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHH
Q 006962 101 QAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQL 180 (623)
Q Consensus 101 ~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~L 180 (623)
+|..|+--.|+||.++..+=-...-++.-+-.+++.+|.-|+....+.|.-.+ .+++..+.|.+++
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~--------------~~~~~~s~e~e~~ 86 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIH--------------EAVAKKSKEWEKI 86 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH--------------HHHHHHhHHHHHH
Confidence 45555666677766666555556667778888999999998888777665332 3567778888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHh
Q 006962 181 KAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAE 260 (623)
Q Consensus 181 K~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~ad 260 (623)
+.+|+. ...++..+|..++.+-.---..+..--..+.++.+..++|.+=+..+...|+.....+-+|+-+
T Consensus 87 ~~~le~----------~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye 156 (769)
T PF05911_consen 87 KSELEA----------KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYE 156 (769)
T ss_pred HHHHHH----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888874 1223333455554443222222233334566677777888888788888888888888777777
Q ss_pred hhHHHHHHhhhHHH
Q 006962 261 GMKAIEAYSSIASE 274 (623)
Q Consensus 261 g~Ka~e~~~sl~~e 274 (623)
.--+..++.=-..|
T Consensus 157 ~~~~~keleir~~E 170 (769)
T PF05911_consen 157 LHVLSKELEIRNEE 170 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666544433333
No 159
>PRK11281 hypothetical protein; Provisional
Probab=64.86 E-value=3.8e+02 Score=33.96 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=24.5
Q ss_pred hhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962 353 KLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 405 (623)
Q Consensus 353 r~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LM 405 (623)
+|.++.++.|-++...-....++|+...+ +..-+...+..|.-|+.+++
T Consensus 289 ~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~----~~q~~~~i~eqi~~l~~s~~ 337 (1113)
T PRK11281 289 QLSQRLLKATEKLNTLTQQNLRVKNWLDR----LTQSERNIKEQISVLKGSLL 337 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccHH
Confidence 34455555555544444444444443322 33335556666666666666
No 160
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=64.08 E-value=1.7e+02 Score=29.65 Aligned_cols=121 Identities=18% Similarity=0.192 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHH-------HHHHHHHHHHH
Q 006962 177 LQQLKAQFEMVAESEAAQTKNAESAH-LELQSLKGNLIETISLMENMKNQLRESKESETQAQ-------ALARETLLQLE 248 (623)
Q Consensus 177 iq~LK~qL~~~~esea~al~~Ae~a~-~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~-------aL~~E~~~QLE 248 (623)
=+++|.+|.+-+-.-+.+..-|=.-. .-++.|.+++-|+-..|+..+..|......-.-|. ..+.-+..-|+
T Consensus 40 a~~vk~~lA~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~ 119 (188)
T PF05335_consen 40 AQQVKNQLADKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALK 119 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888775442222222111111 35777888888888888888877777665443333 33355555556
Q ss_pred HhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006962 249 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297 (623)
Q Consensus 249 ~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a 297 (623)
.++.++.....-...+.-.+.....-|+.++.||..|..-+.....|..
T Consensus 120 ~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 120 AAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777788899999999998777777666544
No 161
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=64.01 E-value=2.7e+02 Score=32.03 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=11.1
Q ss_pred HHHHHhhhhHHHHHHhhHHHHH
Q 006962 503 EALMKLGLLMEEADKSNRRAAR 524 (623)
Q Consensus 503 ea~~kl~~~~ee~~~s~~~~ar 524 (623)
+..-|++.+.+++++-.....+
T Consensus 377 ~Lydkl~~f~~~~~klG~~L~~ 398 (475)
T PRK10361 377 KLYDKMRLFVDDMSAIGQSLDK 398 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665544333333
No 162
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.96 E-value=23 Score=29.96 Aligned_cols=45 Identities=29% Similarity=0.389 Sum_probs=37.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHH
Q 006962 510 LLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWR 554 (623)
Q Consensus 510 ~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWR 554 (623)
.|.+|+.+-..---....+|..|+.-|.+|++|+.+|+-+.+.-|
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888775555566679999999999999999999999988765
No 163
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.42 E-value=4.1e+02 Score=33.48 Aligned_cols=168 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHH-HHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhh----------------hhhh
Q 006962 369 FEQL-EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK----------------NLMC 431 (623)
Q Consensus 369 ye~~-e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~----------------~~~~ 431 (623)
|++| +-.|+-...--..---+|+.+..+-..|--++--+...|+.+.++++.|.-.++. .++-
T Consensus 161 i~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~ 240 (1072)
T KOG0979|consen 161 IELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKW 240 (1072)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhh
Q 006962 432 QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL 511 (623)
Q Consensus 432 ~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~ 511 (623)
..=.....+..........+|.++-+++.+.+.+..-.+.|+++.. +..+.+..+..-=.++..|+-.+
T Consensus 241 v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~-----------et~~~~s~~~~~~~e~~~k~~~~ 309 (1072)
T KOG0979|consen 241 VEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKK-----------ETRSKISQKQRELNEALAKVQEK 309 (1072)
T ss_pred cchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHH-----------hHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 006962 512 MEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLK 547 (623)
Q Consensus 512 ~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLr 547 (623)
.+.++.--.++.+..-+|+....+..-....+-+.|
T Consensus 310 ~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~ 345 (1072)
T KOG0979|consen 310 FEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAK 345 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 164
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.23 E-value=3.3e+02 Score=32.29 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhH
Q 006962 172 SALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAK 251 (623)
Q Consensus 172 sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~ak 251 (623)
..+.+|+..+.++-+.++--++-..--.++..++-+++-.++--.+.++++-+.|.+++.+=-+-++-+..+..||-.|.
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666644444443445556777777777777777777778888877777666777777778877765
Q ss_pred hHHHHHHHhhhHHHHHHhhhHHHHHHHHHHH
Q 006962 252 LSVEALRAEGMKAIEAYSSIASELERSRTRI 282 (623)
Q Consensus 252 atve~L~adg~Ka~e~~~sl~~eLe~S~~r~ 282 (623)
... |.+.+-.++.-+.-.||-..++|
T Consensus 408 ~~~-----ddar~~pe~~d~i~~le~e~~~y 433 (654)
T KOG4809|consen 408 NIE-----DDARMNPEFADQIKQLEKEASYY 433 (654)
T ss_pred Hhh-----HhhhcChhhHHHHHHHHHHHHHH
Confidence 543 22233333444444444444444
No 165
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=62.00 E-value=4.2e+02 Score=33.50 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006962 72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLA 115 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e 115 (623)
..+..-+...-+-+..++++|..-+....-...++++.+..+..
T Consensus 210 ~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~ 253 (1074)
T KOG0250|consen 210 EQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDN 253 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33334445556667777788866666666666666666655543
No 166
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=60.67 E-value=3.3e+02 Score=31.82 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=34.8
Q ss_pred hhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhh
Q 006962 377 HQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGL 421 (623)
Q Consensus 377 ses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L 421 (623)
.+-..|| +|-.+|.+.+..+.+|.....|.+-+.|++-++=+.+
T Consensus 372 ~mn~Ere-~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~ 415 (622)
T COG5185 372 LMNQERE-KLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKT 415 (622)
T ss_pred HHHHHHH-HHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334443 5888999999999999999999999999988776543
No 167
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.63 E-value=3.4e+02 Score=32.04 Aligned_cols=76 Identities=25% Similarity=0.410 Sum_probs=40.6
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHHHhhh-hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHh
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALEIAETKLN-EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 403 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q-EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~ 403 (623)
++..-++|+..++.++..||.-++-. .|. ++-.+++.+ | -+|..+|.+...+++.|.-.
T Consensus 302 Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--~iS~~dve~mn~E-----------------r-~~l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 302 EIEEKEEEIEKLQKENDELKKQIELQ--GISGEDVERMNLE-----------------R-NKLKRELNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHHHHH
Confidence 44445566667777777777666522 111 222222222 1 23556666666666666666
Q ss_pred hcchhhhhhhhhhhhhh
Q 006962 404 LMDKETELQGISEENEG 420 (623)
Q Consensus 404 LMDKEtELQ~IsEENE~ 420 (623)
..+-+-+.|+.-++=++
T Consensus 362 vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 362 VWELKLEIEDFFKELEK 378 (581)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 66666655555555443
No 168
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.58 E-value=61 Score=34.73 Aligned_cols=87 Identities=24% Similarity=0.354 Sum_probs=50.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHH
Q 006962 383 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL 462 (623)
Q Consensus 383 E~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~el 462 (623)
..++..+|+.++.+..+|.+.|..-|.+-..+..|-..|..+. ..+..+-...-.+.+.+.-.++....++
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~---------~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL---------EELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666555554444433333333322 2233333344556677777777777788
Q ss_pred hhHHHhhHHHHHHhch
Q 006962 463 QNISEENEMLKLEISK 478 (623)
Q Consensus 463 q~~~~ene~Lk~e~~k 478 (623)
+++.....-...++.+
T Consensus 116 ~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777777777764
No 169
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.43 E-value=44 Score=39.30 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=29.0
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHH
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK 473 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk 473 (623)
.-...++..++..|..|.-+|+++.+....|....+.|+
T Consensus 470 ~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 470 VRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777888888898888888888877776666664
No 170
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.12 E-value=50 Score=33.63 Aligned_cols=37 Identities=8% Similarity=0.158 Sum_probs=15.7
Q ss_pred hHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHH
Q 006962 436 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEML 472 (623)
Q Consensus 436 el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~L 472 (623)
++...+..++..|.+|+........+|+.+..+|..|
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333333444444444333
No 171
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=58.88 E-value=2.1e+02 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=25.7
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHH
Q 006962 430 MCQRESQLNNDLRKLAQAVEDLKANLMDKETEL 462 (623)
Q Consensus 430 ~~~ke~el~~~l~~~~~~v~~LKa~L~dke~el 462 (623)
...+-.++..++..+..+|..|...|.+||.+|
T Consensus 162 e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 162 EKKKHKEAQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 355667888888888888888888888888764
No 172
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=58.47 E-value=2e+02 Score=28.57 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006962 72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE 122 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLee 122 (623)
.-|+--+..+++.+.+++..++..-+.+..+..++.+....+.....+.+.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~ 76 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAEL 76 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778888888888888888887787777777777766555554443
No 173
>PRK12704 phosphodiesterase; Provisional
Probab=58.07 E-value=3.5e+02 Score=31.24 Aligned_cols=43 Identities=30% Similarity=0.400 Sum_probs=26.4
Q ss_pred hhHHHHHHHhhhhhchHHHHHHHHHHHHh----hccCC---CCcccccccC
Q 006962 535 ANCEAEAELRRLKVQSDQWRKAAEAAASM----LSTGN---NGKCMERSGS 578 (623)
Q Consensus 535 a~~elEaElrrLrVQseQWRKAAeaAaa~----Ls~g~---ng~~~er~gs 578 (623)
|+.+.+.+-|++=+++=| |=|++-++-- +.-.| =|||.+|-|-
T Consensus 182 ~~~~a~~~a~~i~~~a~q-r~a~~~~~e~~~~~v~lp~d~mkgriigreGr 231 (520)
T PRK12704 182 AKEEADKKAKEILAQAIQ-RCAADHVAETTVSVVNLPNDEMKGRIIGREGR 231 (520)
T ss_pred HHHHHHHHHHHHHHHHHH-hhcchhhhhhceeeeecCCchhhcceeCCCcc
Confidence 555666677777776666 4455544433 22233 6899999884
No 174
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=57.47 E-value=1.5e+02 Score=34.01 Aligned_cols=20 Identities=50% Similarity=0.607 Sum_probs=17.6
Q ss_pred hchhhHHHHHHHHHHHHHhh
Q 006962 335 SLKSEVGQLRSALEIAETKL 354 (623)
Q Consensus 335 s~ksEIeeLRsaLe~~Etr~ 354 (623)
..+.|+++||-+|.-||.+|
T Consensus 306 ~~rkelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 306 TSRKELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44469999999999999998
No 175
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.44 E-value=1e+02 Score=32.11 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 438 NNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 438 ~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
..+|.+.+.++..|+-+..++-.|...+.+||..|..+|.
T Consensus 171 ~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 171 QKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 4566677778888888888888888888888888888875
No 176
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.64 E-value=1.2e+02 Score=35.86 Aligned_cols=55 Identities=22% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhh--------------hchHHHHHH----HHHHHHhhcc
Q 006962 512 MEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLK--------------VQSDQWRKA----AEAAASMLST 566 (623)
Q Consensus 512 ~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLr--------------VQseQWRKA----AeaAaa~Ls~ 566 (623)
.-|+..--++..+|.-.|.-...--++|+.+|.+|| .+-++.++- ||..+.+..|
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~gik~G 545 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEG 545 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhccccC
Confidence 344555566777888888777777888888888888 666666654 4666666544
No 177
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.51 E-value=4.8e+02 Score=32.38 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=40.1
Q ss_pred hhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHH
Q 006962 327 KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEE 399 (623)
Q Consensus 327 ~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeE 399 (623)
+-+..+|+..++.|++.++.-.+++..---.+....-+ ..+.|+... -++-+.|..++..++++.+.+|..
T Consensus 754 ~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~q-eqv~El~~~-l~e~~~~l~~~q~e~~~~keq~~t 824 (970)
T KOG0946|consen 754 ELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQ-EQVIELLKN-LSEESTRLQELQSELTQLKEQIQT 824 (970)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhH-HHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777766655432111111111 112233333 445566778888888888877653
No 178
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.21 E-value=3.8e+02 Score=31.10 Aligned_cols=250 Identities=22% Similarity=0.225 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006962 118 SKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKN 197 (623)
Q Consensus 118 skLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~ 197 (623)
.+|.+-++|+.+...+.+++-.- =+.-.||++...+-|.-=+.+|.....=+++|..+|.... +.
T Consensus 244 eel~ae~kqh~v~~~ales~~sq--------~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~-------~~ 308 (521)
T KOG1937|consen 244 EELQAEYKQHLVEYKALESKRSQ--------FEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELN-------KQ 308 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHH-------HH
Confidence 44455555555544444332111 1223456666666666666667777777777777776533 23
Q ss_pred hhhhHHHHHHhhhcH-HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHH-------HHHHhhhHHHHHHh
Q 006962 198 AESAHLELQSLKGNL-IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVE-------ALRAEGMKAIEAYS 269 (623)
Q Consensus 198 Ae~a~~ELe~lk~~l-aetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve-------~L~adg~Ka~e~~~ 269 (623)
..+-+.+.+.-+..+ ..-+.+-+.++++=-+.++ -+.+ .+|..-|++.-..|+ .|+++..++-..+.
T Consensus 309 ~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e----~~~I-qeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~ 383 (521)
T KOG1937|consen 309 MEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE----IRRI-QELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ 383 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH----HHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH
Confidence 444445666666665 3445555555554333332 2333 555555555444443 23333222222111
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHh-------hchhhHHH
Q 006962 270 SIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELS-------SLKSEVGQ 342 (623)
Q Consensus 270 sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~-------s~ksEIee 342 (623)
+..+. -|++++=+.+.|...|..-. ..++.+|.-+.+ +.=+=+.+
T Consensus 384 --rk~yt---qrikEi~gniRKq~~DI~Ki-----------------------l~etreLqkq~ns~se~L~Rsfavtde 435 (521)
T KOG1937|consen 384 --RKVYT---QRIKEIDGNIRKQEQDIVKI-----------------------LEETRELQKQENSESEALNRSFAVTDE 435 (521)
T ss_pred --HHHHH---HHHHHHHhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 11121 25566666666666554310 112222333333 32222222
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccch------HHHHHHHHhhhh--hHHHHHHhhcchhh---hh
Q 006962 343 LRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLRE------VELEAELQKAKS--DIEELKANLMDKET---EL 411 (623)
Q Consensus 343 LRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE------~ELeaELKk~ks--dIeELKA~LMDKEt---EL 411 (623)
| =+++-.- -...|.||.++-++-.-+.+-- +-+..+..-+.. +++++|+-||.-|- -+
T Consensus 436 l---------lf~sakh--ddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dy 504 (521)
T KOG1937|consen 436 L---------LFMSAKH--DDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKLHQDY 504 (521)
T ss_pred H---------HHHHhcc--CHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 1 0111111 1235567777766655333211 112222222223 34558888877663 57
Q ss_pred hhhhhhhhhhhhhhh
Q 006962 412 QGISEENEGLHMQLD 426 (623)
Q Consensus 412 Q~IsEENE~L~~ei~ 426 (623)
|-|..+|..|..+|.
T Consensus 505 qairqen~~L~~~iR 519 (521)
T KOG1937|consen 505 QAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888999999998885
No 179
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.12 E-value=1.3e+02 Score=30.27 Aligned_cols=17 Identities=41% Similarity=0.354 Sum_probs=14.5
Q ss_pred HHhhchhhHHHHHHHHH
Q 006962 332 ELSSLKSEVGQLRSALE 348 (623)
Q Consensus 332 EL~s~ksEIeeLRsaLe 348 (623)
+|..-..+|.-|++.|.
T Consensus 80 ~LE~~GFnV~~l~~RL~ 96 (190)
T PF05266_consen 80 ELEEHGFNVKFLRSRLN 96 (190)
T ss_pred HHHHcCCccHHHHHHHH
Confidence 56678889999999997
No 180
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.48 E-value=4.1e+02 Score=31.29 Aligned_cols=131 Identities=25% Similarity=0.316 Sum_probs=71.4
Q ss_pred hhHHHHHhhchhhHHHHHHHHHH--HHHhhhhhhhhhHHHHhhHHHHHH------HHhhhcccch-HHHHHHHHhhhhhH
Q 006962 327 KHLEEELSSLKSEVGQLRSALEI--AETKLNEGQIQSTVKIKSAFEQLE------QIKHQSGLRE-VELEAELQKAKSDI 397 (623)
Q Consensus 327 ~~Le~EL~s~ksEIeeLRsaLe~--~Etr~qEE~i~st~~i~~aye~~e------~~Kses~qRE-~ELeaELKk~ksdI 397 (623)
+-|...|+.++.|+.+||+.-|- .|+=.-++..+.++ -++. +++.-+.+.| .-+..+|-+.-.++
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y------~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLY------GDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33667889999999999998773 23333455554442 1100 0111111111 11223344444455
Q ss_pred HHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhH
Q 006962 398 EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI 465 (623)
Q Consensus 398 eELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~ 465 (623)
--|-+-|-|+-.++.-|+-||+-|..-+. ...+...++.+|+.-+.+.-+++-+++.+-|-+|+.+
T Consensus 236 skLlsql~d~qkk~k~~~~Ekeel~~~Lq--~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKIKYLRHEKEELDEHLQ--AYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555665566666666665555443 3345556677777777776666666666666666554
No 181
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.14 E-value=52 Score=35.50 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=44.0
Q ss_pred HHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHH--HHhhchhhHHHHH
Q 006962 267 AYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEE--ELSSLKSEVGQLR 344 (623)
Q Consensus 267 ~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~--EL~s~ksEIeeLR 344 (623)
++++|+.-|-.++.+++.=|-.|-.|..-++--. ..-+++ +|...|+ -|+.++-||.|||
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr-------------EDWIEE-----ECHRVEAQLALKEARkEIkQLk 130 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMR-------------EDWIEE-----ECHRVEAQLALKEARKEIKQLK 130 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665444111 111233 4444554 3455555666665
Q ss_pred -------HHHHHHHHhhhhhhhhhHHHHh
Q 006962 345 -------SALEIAETKLNEGQIQSTVKIK 366 (623)
Q Consensus 345 -------saLe~~Etr~qEE~i~st~~i~ 366 (623)
+.|+++..-.|-=.+-.|+|.+
T Consensus 131 QvieTmrssL~ekDkGiQKYFvDINiQN~ 159 (305)
T PF15290_consen 131 QVIETMRSSLAEKDKGIQKYFVDINIQNK 159 (305)
T ss_pred HHHHHHHhhhchhhhhHHHHHhhhhhhHh
Confidence 5666666655655555555555
No 182
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=55.06 E-value=5.9e+02 Score=32.98 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=49.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHhhhhHHH------
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALS------SKLQESQKQLQELSASEEA------ 136 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~S------skLeesQkQ~~e~Sa~e~s------ 136 (623)
.++.++..++.-..+|+-+.+.++.-.+.....+--+...+..-...+. ..++...++....+...-+
T Consensus 740 ~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~ 819 (1294)
T KOG0962|consen 740 KEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIR 819 (1294)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 3567777777777777777777765555544433322222222111111 3344456666666665555
Q ss_pred HHHHHHHHhHH---hHHhhHHHHHHHhhhh
Q 006962 137 RAVELQKVSQE---TDQSCQSELQAIQNQH 163 (623)
Q Consensus 137 r~~Elqk~~q~---~d~~wqsEleavq~qh 163 (623)
.+.|+++-+.. .-.....+++..++..
T Consensus 820 t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~ 849 (1294)
T KOG0962|consen 820 TVDELRKEKSKKQESLDKLRKEIECLQKEV 849 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543222 1234556666666653
No 183
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.07 E-value=43 Score=28.32 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=40.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQ 124 (623)
.||.+||+++....+-+..+++.+ .+-+.++...++++..+..+|.+..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v-------~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVV-------TEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999 8888899999999999999998865
No 184
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=53.77 E-value=3.3e+02 Score=29.76 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=52.0
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhh----HhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHH
Q 006962 204 ELQSLKGNLIETISLMENMKNQLR----ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR 279 (623)
Q Consensus 204 ELe~lk~~laetl~lvE~lKs~l~----e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~ 279 (623)
.++.|...+-.--.--..||.+.. +....+-+.+.|+..|+.||-.|+..|..|-.+.++=.+.+..-.-++-.=-
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665222222233444444 4447778888999999999999999999998888887776554444444333
Q ss_pred HHHHh
Q 006962 280 TRINL 284 (623)
Q Consensus 280 ~r~~~ 284 (623)
+++..
T Consensus 241 sqivd 245 (306)
T PF04849_consen 241 SQIVD 245 (306)
T ss_pred HHHHH
Confidence 33333
No 185
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.66 E-value=1e+02 Score=29.37 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCCCCCCCCccCCC--CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 006962 55 RRSPRSPVSERKRP--SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALS 117 (623)
Q Consensus 55 Rrspr~p~~ekKr~--~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~S 117 (623)
||-|+.|+|+.++- .-+.-|-....++..-|.-..+||...+....+....++-....+..|.
T Consensus 4 ~~l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le 68 (160)
T PF13094_consen 4 RRLARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELE 68 (160)
T ss_pred hhCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888885521 1122222222333333344445554444444555555555444444433
No 186
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=51.94 E-value=39 Score=34.95 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 006962 72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALS 117 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~S 117 (623)
-|||+.+-.+++++++-++|+.....-=+.|.+|-.||+.|+.-+=
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999998888888899999999999887655
No 187
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=51.78 E-value=3.6e+02 Score=29.62 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=96.0
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchh
Q 006962 329 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE 408 (623)
Q Consensus 329 Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKE 408 (623)
-+.++..+..=-+.+...|+.+=..++......+.-++.-...+...|.+-----.+...++.....+|..|+..+.||+
T Consensus 213 a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~ 292 (384)
T PF03148_consen 213 AEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKE 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444445555555555555555554455555666666666655666677888899999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhh----hh--hhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 409 TELQGISEENEGLHMQLDKNLM----CQ--RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 409 tELQ~IsEENE~L~~ei~~~~~----~~--ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.=|.-+-- .++.....+ |. -..-|..|+..+...|..|..+|..-+..++.|..--..|-.+|.
T Consensus 293 ~~lkvaqT-----RL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 293 GPLKVAQT-----RLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred hhHHHHHH-----HHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86654311 111111111 11 245688899999999999999999999999999888777777765
No 188
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.62 E-value=1.7e+02 Score=31.74 Aligned_cols=102 Identities=27% Similarity=0.373 Sum_probs=79.0
Q ss_pred HHHHHHhhhcccchHH---HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHH
Q 006962 370 EQLEQIKHQSGLREVE---LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQ 446 (623)
Q Consensus 370 e~~e~~Kses~qRE~E---LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~ 446 (623)
-+++.+|-+-.||..- |++.|.|-+..+++=|.+.-.---|.|+|+|.-+.|...- .-|..+|.-.+.
T Consensus 25 ~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~r---------qKlshdlq~Ke~ 95 (307)
T PF10481_consen 25 QQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTR---------QKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH---------HHhhHHHhhhHH
Confidence 3455556666666543 6899999999999999999988899999988777553221 346677777888
Q ss_pred HHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhh
Q 006962 447 AVEDLKANLMDKETELQNISEENEMLKLEISKRE 480 (623)
Q Consensus 447 ~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e 480 (623)
.|.-|-+.|----+.+..+..|+--+|.++.+-.
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888899999999999887644
No 189
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=50.45 E-value=5.4e+02 Score=31.19 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHh
Q 006962 494 VEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSA 535 (623)
Q Consensus 494 ~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a 535 (623)
++.-+..-.++...+-++..+++++.+..-++.+++......
T Consensus 554 le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~e 595 (698)
T KOG0978|consen 554 LEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELE 595 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556667888888899999999999988888888776543
No 190
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.11 E-value=1.4e+02 Score=29.12 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=26.6
Q ss_pred HHhhhhHHHHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHH
Q 006962 128 QELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAA 169 (623)
Q Consensus 128 ~e~Sa~e~sr~~Elqk~~q~~d~~wqsEleavq~qhs~Dsaa 169 (623)
..+.+.....+.+|+.--.+....|+.++..++.-++++.++
T Consensus 50 ~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al 91 (155)
T PF06810_consen 50 AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSAL 91 (155)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566555666777888888888777666654
No 191
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=50.04 E-value=2.5e+02 Score=27.20 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=53.9
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Q 006962 201 AHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT 280 (623)
Q Consensus 201 a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~ 280 (623)
...++..++.+|.+.-..+..++..+..++.-...+.....++.. ..+.-.+-.|..|-.+.++.+..+...+..=+.
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~--~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~r 166 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ--QGGLLGVPALLRDYDKTKEEVEELRKEIKELER 166 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777777777777788888877777777777666555433 333344556666666666666666666555555
Q ss_pred HHHhHHH
Q 006962 281 RINLLEG 287 (623)
Q Consensus 281 r~~~LE~ 287 (623)
++..|+.
T Consensus 167 k~~~l~~ 173 (177)
T PF13870_consen 167 KVEILEM 173 (177)
T ss_pred HHHHHHH
Confidence 5555443
No 192
>PRK10698 phage shock protein PspA; Provisional
Probab=49.98 E-value=3e+02 Score=28.15 Aligned_cols=149 Identities=13% Similarity=0.207 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHhhHHHH
Q 006962 77 QVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSEL 156 (623)
Q Consensus 77 ql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~wqsEl 156 (623)
=+...++++-+++..++..-+.++.+..++.+.+........+-+-+-..=.++ |=+..-.+-..+...+
T Consensus 32 ~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~Ed----------LAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 32 MIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKED----------LARAALIEKQKLTDLI 101 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888888888877776665554432221111 2222223344455666
Q ss_pred HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--HHHhhh--cHHHHHHHHHHHHHHhhHhhhh
Q 006962 157 QAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLE--LQSLKG--NLIETISLMENMKNQLRESKES 232 (623)
Q Consensus 157 eavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~E--Le~lk~--~laetl~lvE~lKs~l~e~keS 232 (623)
...+.++......+..-...|.+|+..|..+..=...-......|+++ +...-. +...+++.++.|...+.+.+ +
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~E-a 180 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQME-A 180 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH-H
Confidence 677777777667777777788888888877655444433333333332 222211 22566777777777776655 3
Q ss_pred HHHH
Q 006962 233 ETQA 236 (623)
Q Consensus 233 eAqa 236 (623)
+|+|
T Consensus 181 ~aea 184 (222)
T PRK10698 181 EAES 184 (222)
T ss_pred HHhH
Confidence 3333
No 193
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.68 E-value=76 Score=36.31 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhh
Q 006962 445 AQAVEDLKANLMDKETELQNISEENEMLKLEISKRE 480 (623)
Q Consensus 445 ~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e 480 (623)
.+.|..|=+++-+.+++++.+..+|+.|+.|..+..
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777788888888888888887776443
No 194
>PRK12704 phosphodiesterase; Provisional
Probab=49.47 E-value=4.1e+02 Score=30.69 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhHHHHhhHHHhhHHHHHH
Q 006962 447 AVEDLKANLMDKETELQNISEENEMLKLE 475 (623)
Q Consensus 447 ~v~~LKa~L~dke~elq~~~~ene~Lk~e 475 (623)
.+.....+|..++.+|+....+.+.+..+
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~ 139 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEE 139 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 195
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=49.44 E-value=2.3e+02 Score=30.46 Aligned_cols=43 Identities=33% Similarity=0.452 Sum_probs=23.1
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
..+..+|..+..+...|...|...|.+...+..|...|..+..
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666555555555555555555544443
No 196
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.41 E-value=1.1e+02 Score=31.92 Aligned_cols=44 Identities=23% Similarity=0.458 Sum_probs=32.8
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhc
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQS 379 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses 379 (623)
...+||+|+.....+|..||..+. .++-.|+.+ ||-+..+.+-.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~----~L~~DN~kL-------YEKiRylqSY~ 137 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVE----SLRADNVKL-------YEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHhhCc
Confidence 455699999999999999999888 455555544 66666666644
No 197
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.33 E-value=64 Score=31.49 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
..+..=.++..++...||..|+.|.+||+.++.-+. .-...+.++-.+|..|+.+|+++-..+.
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~----------------pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANP----------------PDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555578889999999999999999998754443 3344566666777888887777655444
Q ss_pred h
Q 006962 464 N 464 (623)
Q Consensus 464 ~ 464 (623)
.
T Consensus 114 ~ 114 (143)
T PRK11546 114 I 114 (143)
T ss_pred H
Confidence 3
No 198
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=48.91 E-value=3.1e+02 Score=29.20 Aligned_cols=91 Identities=13% Similarity=0.212 Sum_probs=53.2
Q ss_pred HHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHH
Q 006962 387 EAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS 466 (623)
Q Consensus 387 eaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~ 466 (623)
...+.-++..|.+++.+|.+-|..|+.....|-.+.-+-........-.+|..+|..++.+++.|....-+.-=.++.+.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~ 248 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQ 248 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHH
Confidence 34556677888888888888899898888888776543332222333444555555555555555444333334444444
Q ss_pred HhhHHHHHHhc
Q 006962 467 EENEMLKLEIS 477 (623)
Q Consensus 467 ~ene~Lk~e~~ 477 (623)
.+...|+.+|.
T Consensus 249 ~~i~~l~~~i~ 259 (362)
T TIGR01010 249 ARIKSLRKQID 259 (362)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 199
>PF15294 Leu_zip: Leucine zipper
Probab=48.58 E-value=3.8e+02 Score=28.94 Aligned_cols=177 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh-hhhhhhhHHHHhhHHHHH-HHHhhhcccch-----------
Q 006962 317 IKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL-NEGQIQSTVKIKSAFEQL-EQIKHQSGLRE----------- 383 (623)
Q Consensus 317 ~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~-qEE~i~st~~i~~aye~~-e~~Kses~qRE----------- 383 (623)
.+.+.+.+-.| ....-|-.||--+..+|.-| ...-..+.++-+...|++ +.-+.+.+..=
T Consensus 46 v~~~vesEL~N-------~~htn~lllrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL 118 (278)
T PF15294_consen 46 VKSEVESELIN-------TSHTNVLLLRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKL 118 (278)
T ss_pred HHHHHHHHHHh-------HHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccc
Q ss_pred ----HH-----HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHh
Q 006962 384 ----VE-----LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKAN 454 (623)
Q Consensus 384 ----~E-----LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~ 454 (623)
.. |..|..+++.+-+-||..|++-|..-=...+|+..|+..|+.-........-...+.-...++..|-..
T Consensus 119 ~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k 198 (278)
T PF15294_consen 119 EPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENK 198 (278)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHH
Q ss_pred hhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 006962 455 LMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQS 534 (623)
Q Consensus 455 L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~ 534 (623)
+.....+++.-....+....-+. +.+..+..-.-++.++|..++.
T Consensus 199 ~a~lK~e~ek~~~d~~~~~k~L~-----------------------------------e~L~~~KhelL~~QeqL~~aek 243 (278)
T PF15294_consen 199 MAALKSELEKALQDKESQQKALE-----------------------------------ETLQSCKHELLRVQEQLSLAEK 243 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHhcchhhhcchh
Q ss_pred h
Q 006962 535 A 535 (623)
Q Consensus 535 a 535 (623)
.
T Consensus 244 e 244 (278)
T PF15294_consen 244 E 244 (278)
T ss_pred h
No 200
>PRK00846 hypothetical protein; Provisional
Probab=48.40 E-value=72 Score=28.23 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=42.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQ 124 (623)
.||.+||+++.....=+..+++.+ .+-+..+..-+.|+.-+..+|.+++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v-------~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEAL-------ADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999998888888888888 6777888888999999999998876
No 201
>PRK00736 hypothetical protein; Provisional
Probab=47.81 E-value=77 Score=26.99 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=40.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQ 124 (623)
.||.+||.++.....-+..+++.+ .+-+.++...++|+.-+..+|.+++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v-------~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQL-------AEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999988888888888 6777778888888888888887653
No 202
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=46.86 E-value=6.8e+02 Score=31.33 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHH----HHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhH
Q 006962 176 ELQQLKAQFEMVAE----SEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESE 233 (623)
Q Consensus 176 Eiq~LK~qL~~~~e----sea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSe 233 (623)
++.+.+.+|.+.-+ +.-.+....++--..++.+++++.-.+--++.+...+.-+.++.
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~ 524 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSH 524 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44455544444444 33333333444445677778887666666666666665555554
No 203
>KOG2418 consensus Microtubule-associated protein TAU [Cytoskeleton]
Probab=46.67 E-value=34 Score=38.14 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=21.3
Q ss_pred CCCCCCCCCCccCCCCchhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 006962 54 DRRSPRSPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWK 99 (623)
Q Consensus 54 dRrspr~p~~ekKr~~r~seLesql~q~QeeLkkaKeQL~~sE~~K 99 (623)
-|.+|++|...|.. |. +.+--=|||..|-.|-+..+-|
T Consensus 267 vrtppkSps~~k~l--r~------~p~p~pdlkNVKSKIGSt~NiK 304 (448)
T KOG2418|consen 267 VRTPPKSPSIDKVL--RM------TPKPNPDLKNVKSKIGSTTNIK 304 (448)
T ss_pred eecCCCCCCccchh--cc------cCCCCchhhhhhhhcccccccc
Confidence 47777787776521 10 1233446666666666665544
No 204
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.60 E-value=4.1e+02 Score=30.59 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=24.6
Q ss_pred hhHHHHHHHhhhhhchHHHHHHHHHHHH----hhccCC---CCcccccccC
Q 006962 535 ANCEAEAELRRLKVQSDQWRKAAEAAAS----MLSTGN---NGKCMERSGS 578 (623)
Q Consensus 535 a~~elEaElrrLrVQseQWRKAAeaAaa----~Ls~g~---ng~~~er~gs 578 (623)
|+.+.+..-|++=+++=| |=|++-++= ++.-.| =|||.+|-|-
T Consensus 176 ~~~~a~~~a~~i~~~aiq-r~a~~~~~e~~~~~v~lp~d~~kgriigreGr 225 (514)
T TIGR03319 176 AKEEADKKAKEILATAIQ-RYAGDHVAETTVSVVNLPNDEMKGRIIGREGR 225 (514)
T ss_pred HHHHHHHHHHHHHHHHHH-hccchhhhhheeeeEEcCChhhhccccCCCcc
Confidence 445555555666666555 444444433 332233 6899999884
No 205
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.57 E-value=5.1e+02 Score=29.85 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=10.3
Q ss_pred HHHHHHhhhhhHHHHhhHHHhhHHH
Q 006962 448 VEDLKANLMDKETELQNISEENEML 472 (623)
Q Consensus 448 v~~LKa~L~dke~elq~~~~ene~L 472 (623)
+......|..++.+|+.+..+...+
T Consensus 106 Le~ke~~L~~re~eLee~~~e~~~~ 130 (514)
T TIGR03319 106 LEKKEKELSNKEKNLDEKEEELEEL 130 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 206
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.25 E-value=4.2e+02 Score=28.76 Aligned_cols=84 Identities=29% Similarity=0.291 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhh-----------------hhHHHHH
Q 006962 339 EVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAK-----------------SDIEELK 401 (623)
Q Consensus 339 EIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~k-----------------sdIeELK 401 (623)
++.+|...+-+.+++ |.++|.+...--|-+|....++-+.+.-|+-.|-.+. ++++--|
T Consensus 53 qL~q~etrnrdl~t~----nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 53 QLDQLETRNRDLETR----NQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh
Confidence 334444444444443 3455554444445555555555555555555544444 4444333
Q ss_pred H----hhcchhhhhhhhhhhhhhhhhhhh
Q 006962 402 A----NLMDKETELQGISEENEGLHMQLD 426 (623)
Q Consensus 402 A----~LMDKEtELQ~IsEENE~L~~ei~ 426 (623)
- .|-|-|..|-..-|-|-.|-+++.
T Consensus 129 Rati~sleDfeqrLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 129 RATIYSLEDFEQRLNQAIERNAFLESELD 157 (333)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 234555555555555555555553
No 207
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=46.11 E-value=5.1e+02 Score=29.69 Aligned_cols=74 Identities=22% Similarity=0.188 Sum_probs=34.7
Q ss_pred hhHHHHHhhchhhHHHHHHHHHHHHHhhhhh-h--h-hhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHH
Q 006962 327 KHLEEELSSLKSEVGQLRSALEIAETKLNEG-Q--I-QSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 402 (623)
Q Consensus 327 ~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE-~--i-~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA 402 (623)
++|+.+.+.+. ..+.++..+..+-.-|.++ + . ...-.|..+...+..+ .+..=.++...|..+-..++++-.
T Consensus 212 e~L~~e~~~L~-n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~---~d~~~~~~~~~l~~~~~~l~d~~~ 287 (563)
T TIGR00634 212 EALEAEQQRLS-NLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASV---IDGSLRELAEQVGNALTEVEEATR 287 (563)
T ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHh---hhHhHHHHHHHHHHHHHHHHHHHH
Confidence 34666666654 4566666666665545332 1 1 2233444455555444 232333444444444444444443
Q ss_pred hh
Q 006962 403 NL 404 (623)
Q Consensus 403 ~L 404 (623)
.|
T Consensus 288 ~l 289 (563)
T TIGR00634 288 EL 289 (563)
T ss_pred HH
Confidence 33
No 208
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.35 E-value=6e+02 Score=30.26 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 006962 213 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 292 (623)
Q Consensus 213 aetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskL 292 (623)
-+.+--||.++-...++++--.+++.-..+-..+|-+-+--.-+|.+-|.+....+.++...||+-+-.+--+|..+.+.
T Consensus 327 rE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 327 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999988777776556667777777777889999999999999999999999999888888888888
Q ss_pred hhhhhcc
Q 006962 293 EADTSNA 299 (623)
Q Consensus 293 q~~~a~~ 299 (623)
+...-.+
T Consensus 407 h~~~dda 413 (654)
T KOG4809|consen 407 HNIEDDA 413 (654)
T ss_pred HHhhHhh
Confidence 8654433
No 209
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.34 E-value=4.3e+02 Score=28.61 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHhHHhHHhhHHHHHHHh
Q 006962 132 ASEEARAVELQKVSQETDQSCQSELQAIQ 160 (623)
Q Consensus 132 a~e~sr~~Elqk~~q~~d~~wqsEleavq 160 (623)
......+..|++++.+.+.-=+.||..++
T Consensus 182 ~~L~~e~~~L~~~~~e~~~~d~~eL~~lk 210 (312)
T smart00787 182 DALEEELRQLKQLEDELEDCDPTELDRAK 210 (312)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHHHHHHHH
Confidence 33333334444444433333333333333
No 210
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=45.31 E-value=6.4e+02 Score=30.59 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHhhccCCCC
Q 006962 522 AARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNG 570 (623)
Q Consensus 522 ~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa~Ls~g~ng 570 (623)
-.+++--|+..=.||+.-+.=+--||-=.++++|-|+-- |+.-|--|
T Consensus 276 d~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv--~i~qg~~~ 322 (861)
T KOG1899|consen 276 DNTLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQIV--RILQGEPS 322 (861)
T ss_pred HHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhh--hhhcCCCc
Confidence 336666777777899999988889999999999999854 55545533
No 211
>PRK00295 hypothetical protein; Provisional
Probab=44.65 E-value=1e+02 Score=26.25 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=40.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQ 124 (623)
.||.+||.++....+-+..+++.+ .+-+.++...++|+..+..+|.+..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v-------~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVL-------VEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 479999999999998888888888 7777778888888888877777653
No 212
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.33 E-value=4.8e+02 Score=28.87 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=28.5
Q ss_pred HhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 006962 150 QSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAE 189 (623)
Q Consensus 150 ~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~e 189 (623)
+.|.+=++++++.+..=...+..+-.-+.+|-.++..+-+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~le 255 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLE 255 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4788888888887777777777777777777666665443
No 213
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.30 E-value=3.5e+02 Score=27.30 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHH
Q 006962 167 SAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQ 246 (623)
Q Consensus 167 saaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~Q 246 (623)
..+...-+..|..||.++.....=+...-+...+...+...+..-|.....-++.|+.++.....
T Consensus 19 ndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k--------------- 83 (201)
T PF13851_consen 19 NDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK--------------- 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 34466778899999999998777665555555555566666665565555555555555554433
Q ss_pred HHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962 247 LETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 295 (623)
Q Consensus 247 LE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~ 295 (623)
++.....+++-...+...+..|..+-++-.-++..++.....|...
T Consensus 84 ---dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 84 ---DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333444445555555555556666666666666543
No 214
>PRK04406 hypothetical protein; Provisional
Probab=44.26 E-value=94 Score=27.09 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=40.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQES 123 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLees 123 (623)
.||.+||+++.....-+..+++.+ .+-+.++..-++|+..+..+|.+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v-------~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDAL-------SQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999998899888888 777777888888888887777664
No 215
>PRK02119 hypothetical protein; Provisional
Probab=44.02 E-value=89 Score=27.01 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=40.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQ 124 (623)
.||.+||.++.....-+..+++.+ .+-+.++..-++|+..+..+|.+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v-------~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQAL-------IEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 489999999999998899888888 7777777788888888877776643
No 216
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.77 E-value=7.4e+02 Score=30.87 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=11.3
Q ss_pred hhhcHHHHHHHHHHHHHHhh
Q 006962 208 LKGNLIETISLMENMKNQLR 227 (623)
Q Consensus 208 lk~~laetl~lvE~lKs~l~ 227 (623)
+-.++......++.+|+...
T Consensus 756 l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 756 LTKELNKKNADIESFKATQR 775 (970)
T ss_pred HHHHHHhhhHHHHHHHHHHh
Confidence 44555555566666665544
No 217
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=43.39 E-value=4e+02 Score=27.69 Aligned_cols=108 Identities=25% Similarity=0.311 Sum_probs=55.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHH
Q 006962 263 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQ 342 (623)
Q Consensus 263 Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIee 342 (623)
.+.+.+.....+|..+..++..|++....++.... .|.....+.++
T Consensus 16 q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~----------------------------------~Le~k~~eaee 61 (246)
T PF00769_consen 16 QMEEEMRRAQEALEESEETAEELEEKLKQAEEEAE----------------------------------ELEQKRQEAEE 61 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHH
Confidence 44445555556666666677666666555553111 22233344444
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHH---HHHHHHhhhhhHHHHHHhh
Q 006962 343 LRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVE---LEAELQKAKSDIEELKANL 404 (623)
Q Consensus 343 LRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~E---LeaELKk~ksdIeELKA~L 404 (623)
....|...=....+|+.++--+|.-+...+.++..++..++.| |..+|..+..+...-+..|
T Consensus 62 ~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 62 EKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444556777777777776667777777777777765 4555555555555555555
No 218
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.04 E-value=4e+02 Score=27.52 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHH
Q 006962 169 ALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLE 248 (623)
Q Consensus 169 aL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE 248 (623)
-|.+.+..++-=...|.+=...=...+.++++..+.|.. -+..|+.++..+.++--.|.+|
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~----------e~~~L~~q~~s~Qqal~~aK~l--------- 65 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAE----------EITDLRKQLKSLQQALQKAKAL--------- 65 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---------
Confidence 366666666666666665444444444445444443321 1334444444443332233332
Q ss_pred HhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhh
Q 006962 249 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 294 (623)
Q Consensus 249 ~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~ 294 (623)
+-.++.|+.....+.+.+++|-....+.+..-++|...|-+||.
T Consensus 66 --~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 66 --EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345566666666666666666666666677776666666663
No 219
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.72 E-value=5e+02 Score=28.58 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=6.7
Q ss_pred HHHhhHHHHHHhc
Q 006962 465 ISEENEMLKLEIS 477 (623)
Q Consensus 465 ~~~ene~Lk~e~~ 477 (623)
+..||--|+-.|.
T Consensus 194 Li~ENRyL~erl~ 206 (319)
T PF09789_consen 194 LIMENRYLKERLK 206 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 220
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=42.45 E-value=4.2e+02 Score=27.70 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=27.7
Q ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHh
Q 006962 255 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 293 (623)
Q Consensus 255 e~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq 293 (623)
..|...|.-....|.....++..++++++.++..+..++
T Consensus 134 ~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 172 (331)
T PRK03598 134 QGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYR 172 (331)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777888888887777665555444
No 221
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=42.11 E-value=6.1e+02 Score=29.44 Aligned_cols=142 Identities=28% Similarity=0.362 Sum_probs=92.5
Q ss_pred hhhHHHHHhhchhhHHHHHHHHHHHH----------HhhhhhhhhhHHHHhhHHHHHHHHhhhcc---cchHHHHHHHHh
Q 006962 326 SKHLEEELSSLKSEVGQLRSALEIAE----------TKLNEGQIQSTVKIKSAFEQLEQIKHQSG---LREVELEAELQK 392 (623)
Q Consensus 326 ~~~Le~EL~s~ksEIeeLRsaLe~~E----------tr~qEE~i~st~~i~~aye~~e~~Kses~---qRE~ELeaELKk 392 (623)
++.++.||..=|--.++|.-||.-|= +.|||-|+.+--.-+...+-++-||..-. -|=++.. =.+.
T Consensus 311 aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~r-F~~s 389 (488)
T PF06548_consen 311 AEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESR-FINS 389 (488)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-HHHH
Confidence 44466777777777778887776552 33488889888887777788877776332 2222211 1233
Q ss_pred hhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh-hhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHH
Q 006962 393 AKSDIEELKANLMDKETELQGISEENEGLHMQLD-KNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEM 471 (623)
Q Consensus 393 ~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~-~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~ 471 (623)
+-++|--||+ ++|.|-..+.+||.+|+..++ ..--++---||-.-|+--++.+..-..+-|+ +.+||+.
T Consensus 390 laaEiSalr~---erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~-------~eqe~ek 459 (488)
T PF06548_consen 390 LAAEISALRA---EREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMD-------AEQENEK 459 (488)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4455555555 599999999999999999998 3333555566666677666655555554444 4566777
Q ss_pred HHHHhch
Q 006962 472 LKLEISK 478 (623)
Q Consensus 472 Lk~e~~k 478 (623)
|+.||.|
T Consensus 460 ~~kqiek 466 (488)
T PF06548_consen 460 AKKQIEK 466 (488)
T ss_pred HHHHHHH
Confidence 7777763
No 222
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.07 E-value=7.2e+02 Score=30.24 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=34.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006962 70 RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE 122 (623)
Q Consensus 70 r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLee 122 (623)
+-..|+.|+-..+.+.+...+-+..+-..+-....++.....++..--++++.
T Consensus 120 ~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~ 172 (716)
T KOG4593|consen 120 QEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQW 172 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766666655555555555566666667777777777766666665
No 223
>PRK04325 hypothetical protein; Provisional
Probab=41.34 E-value=1.1e+02 Score=26.40 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=40.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQ 124 (623)
.||.+||.++.....-+..+++.+ .+-+.++..-++|+.-+..+|.+..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv-------~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATV-------ARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999988888888888 6777777888888888888877653
No 224
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.97 E-value=1.8e+02 Score=25.06 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=12.5
Q ss_pred HhHhHHHHHHHhhhHHHH
Q 006962 249 TAKLSVEALRAEGMKAIE 266 (623)
Q Consensus 249 ~akatve~L~adg~Ka~e 266 (623)
.=-..|..|..+|-++..
T Consensus 9 EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334567888888888774
No 225
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.80 E-value=6.6e+02 Score=29.50 Aligned_cols=89 Identities=25% Similarity=0.359 Sum_probs=49.8
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHH----HHhhhhhHHH
Q 006962 386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDL----KANLMDKETE 461 (623)
Q Consensus 386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~L----Ka~L~dke~e 461 (623)
|+.-.+.++++|.||--.|=--|.+|-.+-.+-+.++-.-... -.-...|..+++.++..| +.++.+-|.-
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e-----~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~ 559 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERE-----LVAQRIEIEKLEKELNDLNLLSKTSILDAEQL 559 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHhhhhccchHhhHHHH
Confidence 4455556666666665555444444433322222222111110 111234455555555555 5788899999
Q ss_pred HhhHHHhhHHHHHHhchh
Q 006962 462 LQNISEENEMLKLEISKR 479 (623)
Q Consensus 462 lq~~~~ene~Lk~e~~k~ 479 (623)
+|+..-+-..++..++.+
T Consensus 560 vqs~~i~ld~~~~~~n~~ 577 (622)
T COG5185 560 VQSTEIKLDELKVDLNRK 577 (622)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 999988888888888743
No 226
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.06 E-value=6.5e+02 Score=29.15 Aligned_cols=192 Identities=28% Similarity=0.303 Sum_probs=94.4
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHH---HhhhhhhhhhHHHHhhHHHHH-HHHhhhcccchHHHHHHHHhhhhhHHHH
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALEIAE---TKLNEGQIQSTVKIKSAFEQL-EQIKHQSGLREVELEAELQKAKSDIEEL 400 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe~~E---tr~qEE~i~st~~i~~aye~~-e~~Kses~qRE~ELeaELKk~ksdIeEL 400 (623)
.-+.+.-.+.-++-.|.+|--.--+++ +++--||.++ .--|-+| |++|-.-..++--|..+=++-+ +|.-
T Consensus 216 ~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqL----vhR~h~LEEq~reqElraeE~l~Ee~rrhr-Eil~- 289 (502)
T KOG0982|consen 216 ERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQL----VHRYHMLEEQRREQELRAEESLSEEERRHR-EILI- 289 (502)
T ss_pred hhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHH----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHH-
Confidence 334466777777777777643222222 2222333333 2335555 4444333333333333333322 2221
Q ss_pred HHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhh
Q 006962 401 KANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE 480 (623)
Q Consensus 401 KA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e 480 (623)
.|.+|..|+ ||.|++.+. -|..+-..+...|+.||..-...+.+.|...+..+.|..++.--.
T Consensus 290 ---k~eReasle-----~Enlqmr~q---------qleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq 352 (502)
T KOG0982|consen 290 ---KKEREASLE-----KENLQMRDQ---------QLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQ 352 (502)
T ss_pred ---HHHHHHHHH-----HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 233444332 455666653 344455566677778888777777788888888888877776211
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHH------HHh-hHHHHHHHhhhhhc
Q 006962 481 LDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAA------QSA-NCEAEAELRRLKVQ 549 (623)
Q Consensus 481 ~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aa------q~a-~~elEaElrrLrVQ 549 (623)
-....|.+- ..-. -.++++.-- |+||+.++--++-+.. |..+ ..| -.+|+.|++|||--
T Consensus 353 ~l~~rm~d~-Lrrf----q~ekeatqE---Lieelrkelehlr~~k--l~~a~p~rgrsSaRe~eleqevkrLrq~ 418 (502)
T KOG0982|consen 353 KLRVRMNDI-LRRF----QEEKEATQE---LIEELRKELEHLRRRK--LVLANPVRGRSSAREIELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHH-HHHH----HHhhHHHHH---HHHHHHHHHHHHHHHH--HHhhccccCchhHHHHHHHHHHHHhccc
Confidence 111111111 1111 122233222 4566666555554433 2222 113 35699999999853
No 227
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=40.02 E-value=4.4e+02 Score=27.17 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=58.4
Q ss_pred HHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHH
Q 006962 266 EAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRS 345 (623)
Q Consensus 266 e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRs 345 (623)
..+..+-.+.++..+.+.++|--.+.|..+..... . .++.+..-=..++..|.+...
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K---------------~--------vi~~~k~NEE~Lkk~~~ey~~ 125 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQK---------------E--------VIEGYKKNEETLKKCIEEYEE 125 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHH---------------H--------HHHHHHHhHHHHHHHHHHHHH
Confidence 34455555666666677777766666665422111 0 111111111244555666666
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHh
Q 006962 346 ALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 403 (623)
Q Consensus 346 aLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~ 403 (623)
.|.--+.||+-=.....-+|..|=+-++++.+.....-.-|.+.|++..-.|.-|-..
T Consensus 126 ~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~ 183 (207)
T PF05010_consen 126 RLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEES 183 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665333333334445555555555555555555566666655555544433
No 228
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.88 E-value=3.3e+02 Score=27.81 Aligned_cols=77 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhH
Q 006962 70 RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQ 146 (623)
Q Consensus 70 r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q 146 (623)
|+..+.-+...+..+++.++.|+...+.-..+....+..-++.+.++..+++....-..+.......-+..|+....
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 229
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=39.84 E-value=6.3e+02 Score=30.30 Aligned_cols=136 Identities=24% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHH---HHHHHHHhHHHHHHHHhhhhhcccccccc
Q 006962 229 SKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE---RSRTRINLLEGLVSKLEADTSNANRNLSQ 305 (623)
Q Consensus 229 ~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe---~S~~r~~~LE~lvskLq~~~a~~~~~~~~ 305 (623)
++++......+ ..+..+|+....+++.+......++.+-..+...+- ..+..++.|+.+.........
T Consensus 174 ~k~~~~~~~~~-~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-------- 244 (670)
T KOG0239|consen 174 LKESLKLESDL-GDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQ-------- 244 (670)
T ss_pred HHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHH--------
Q ss_pred CCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhcccc
Q 006962 306 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQSGLR 382 (623)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses~qR 382 (623)
.+..++..|+..+....... +.++...--.++.-...|.....+.-.+
T Consensus 245 -----------------------------~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~ 295 (670)
T KOG0239|consen 245 -----------------------------ALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEK 295 (670)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhhhhHHHHHHh
Q 006962 383 EVELEAELQKAKSDIEELKAN 403 (623)
Q Consensus 383 E~ELeaELKk~ksdIeELKA~ 403 (623)
+ .=..+-+++...|.+||.|
T Consensus 296 ~-~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 296 K-KEKEERRKLHNEILELKGN 315 (670)
T ss_pred H-HHHHHHHHHHHHHHHhhcC
No 230
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=39.44 E-value=4.8e+02 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhh
Q 006962 73 ELESQVSRLQEDLKKAKNQLSS 94 (623)
Q Consensus 73 eLesql~q~QeeLkkaKeQL~~ 94 (623)
+++.++.+++-++..++.+|..
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~ 104 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMT 104 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655543
No 231
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.40 E-value=3.6e+02 Score=26.01 Aligned_cols=46 Identities=35% Similarity=0.536 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 006962 79 SRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS 131 (623)
Q Consensus 79 ~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~S 131 (623)
.+.+.++.+.+.++ .....++.+-+....++...+...+.....+.
T Consensus 77 ~~~~~e~~~~~~~l-------~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 77 PRLQGELSELQQQL-------QQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhhhhHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 46677777777777 66666666666666666666666555444443
No 232
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=39.14 E-value=8.6e+02 Score=30.33 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006962 72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE 122 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLee 122 (623)
..+..+...++..++.+..++.-.... .....++.+.+.++..+....++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~ 275 (1047)
T PRK10246 226 QVLTDEEKQLLTAQQQQQQSLNWLTRL-DELQQEASRRQQALQQALAAEEK 275 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444322221 23444555666655555544444
No 233
>PRK02793 phi X174 lysis protein; Provisional
Probab=38.53 E-value=1.3e+02 Score=25.83 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=38.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQES 123 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLees 123 (623)
.||.+||.++.....-+..+++.+ .+-+.++..-++++..+..+|.+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v-------~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTV-------TAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999888888888888 666777777777777777777664
No 234
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=38.49 E-value=3.9e+02 Score=32.61 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHH
Q 006962 71 ISELESQVSRLQE 83 (623)
Q Consensus 71 ~seLesql~q~Qe 83 (623)
|.||+.++..+..
T Consensus 103 i~ele~ki~el~~ 115 (762)
T PLN03229 103 LVDLEKKIVDVRK 115 (762)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766554
No 235
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.25 E-value=77 Score=26.03 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006962 447 AVEDLKANLMDKETELQNISEENEMLKLEISK 478 (623)
Q Consensus 447 ~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k 478 (623)
.+..++..+-+.+++++.+..+|..|+.++..
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666888889999999988884
No 236
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=37.95 E-value=1.4e+02 Score=32.79 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=13.6
Q ss_pred HHHHhhhhhchHHHHHH
Q 006962 540 EAELRRLKVQSDQWRKA 556 (623)
Q Consensus 540 EaElrrLrVQseQWRKA 556 (623)
.-++.||++|||=||--
T Consensus 204 ~Eq~erl~iqcdVWrsK 220 (383)
T KOG4074|consen 204 DEQSERLRIQCDVWRSK 220 (383)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 34567999999999953
No 237
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=37.81 E-value=1.3e+02 Score=26.23 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=17.5
Q ss_pred chhhhhhhhhhhhhhhhhhhh
Q 006962 406 DKETELQGISEENEGLHMQLD 426 (623)
Q Consensus 406 DKEtELQ~IsEENE~L~~ei~ 426 (623)
|-|..+..+.-||=.|+++|.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~ 24 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIY 24 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 457778888899999999995
No 238
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.66 E-value=1e+02 Score=32.02 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=45.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 414 ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 414 IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.+++|+.|+....... .++.+......+...|+..|..+.++|.....++..|++|..
T Consensus 132 ~~~~~~~lk~~~~~~~------~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 132 AMKENEALKKQLENSS------KLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred HHHHHHHHHHhhhccc------chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456676666665321 177888888888888999999999999999999999999987
No 239
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=37.21 E-value=6.8e+02 Score=28.60 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=44.1
Q ss_pred hhhhHHHHHHhhHHHHHHHHHhhhhhH--HHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhh
Q 006962 433 RESQLNNDLRKLAQAVEDLKANLMDKE--TELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGL 510 (623)
Q Consensus 433 ke~el~~~l~~~~~~v~~LKa~L~dke--~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~ 510 (623)
+-..|...+..++..|+.++++|-... .-+.....+.+.|..+.. + -.+.+.-|.+.++.|+ -||.-+.-|
T Consensus 315 qV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~e--f--Ae~~y~sAlaaLE~AR---~EA~RQ~~Y 387 (434)
T PRK15178 315 LIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSE--I--AKARWESALQTLQQGK---LQALRERQY 387 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHH---HHHHhhhhh
Confidence 456778888888888999888875321 145567777888877765 1 1233444555555554 444444444
Q ss_pred h
Q 006962 511 L 511 (623)
Q Consensus 511 ~ 511 (623)
|
T Consensus 388 L 388 (434)
T PRK15178 388 L 388 (434)
T ss_pred e
Confidence 3
No 240
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.56 E-value=3e+02 Score=24.34 Aligned_cols=74 Identities=27% Similarity=0.313 Sum_probs=50.7
Q ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhh
Q 006962 256 ALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSS 335 (623)
Q Consensus 256 ~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s 335 (623)
.+..+...+...++.+..+++.-+++.+.+-..|.++...- .++..|.++.+.
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~---------------------------~~~~~l~~e~~~ 78 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG---------------------------EDAEELKAEVKE 78 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT---------------------------CCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc---------------------------ccHHHHHHHHHH
Confidence 34445556677778888888888888777655555554311 244557788888
Q ss_pred chhhHHHHHHHHHHHHHhhhh
Q 006962 336 LKSEVGQLRSALEIAETKLNE 356 (623)
Q Consensus 336 ~ksEIeeLRsaLe~~Etr~qE 356 (623)
++.+|..|...+...+.+++.
T Consensus 79 lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 79 LKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877776653
No 241
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=35.84 E-value=8.1e+02 Score=29.02 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=35.6
Q ss_pred HHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhh
Q 006962 373 EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGI 414 (623)
Q Consensus 373 e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~I 414 (623)
..+=..+.+++..+.+|++...+.-+|+.++|-.-|.+|+++
T Consensus 260 ~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 260 DEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333446678889999999999999999999999999999885
No 242
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=35.79 E-value=8.5e+02 Score=29.30 Aligned_cols=150 Identities=24% Similarity=0.279 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHhHhH---HHHHHHhhhHHHHHHhhhHHHHHHHH--------HHHHhHHHHHHHHhh--hhhcccc
Q 006962 235 QAQALARETLLQLETAKLS---VEALRAEGMKAIEAYSSIASELERSR--------TRINLLEGLVSKLEA--DTSNANR 301 (623)
Q Consensus 235 qa~aL~~E~~~QLE~akat---ve~L~adg~Ka~e~~~sl~~eLe~S~--------~r~~~LE~lvskLq~--~~a~~~~ 301 (623)
+++......+.|+|.|--= .+....+...-++.+-.+..++++=| .-.-.||.+|.++.+ ...+..-
T Consensus 106 ~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~ 185 (683)
T PF08580_consen 106 DVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRF 185 (683)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCc
Confidence 5555556667777766111 12222333333444455555555333 234578999999962 1111111
Q ss_pred ccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhccc
Q 006962 302 NLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGL 381 (623)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~q 381 (623)
+.| . | +..-+.|...|-.+.+-|.=||+.|+.-=.|+.+=+.++..-+-.|.+.|+.
T Consensus 186 ~lP--t---F-----------~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~------- 242 (683)
T PF08580_consen 186 SLP--T---F-----------SPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELED------- 242 (683)
T ss_pred CCC--C---C-----------CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence 111 0 0 0111225667888899999999999888888876666665555555555543
Q ss_pred chHHHHHHHHhhhhhHHHHHHhhcch
Q 006962 382 REVELEAELQKAKSDIEELKANLMDK 407 (623)
Q Consensus 382 RE~ELeaELKk~ksdIeELKA~LMDK 407 (623)
|-..|...-+.+..+++.||..|-|+
T Consensus 243 r~~~L~~k~~~L~~e~~~LK~ELied 268 (683)
T PF08580_consen 243 RYERLEKKWKKLEKEAESLKKELIED 268 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33447788888888888888888865
No 243
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=35.73 E-value=39 Score=31.00 Aligned_cols=77 Identities=27% Similarity=0.345 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
.+++........+|++|=++||+ +.|.|-...-. +-..+...+..|+..|.+++..|.
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFe---------EAN~MVa~ar~-------------e~~~~e~k~~~le~~l~e~~~~l~ 68 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFE---------EANKMVADARR-------------ERAALEEKNEQLEKQLKEKEALLE 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-------------HHHHHHHHHHHHHHCTTHHCHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999995 44554422221 223344556789999999999999
Q ss_pred hHHHhhHHHHHHhchhhcc
Q 006962 464 NISEENEMLKLEISKRELD 482 (623)
Q Consensus 464 ~~~~ene~Lk~e~~k~e~~ 482 (623)
++..+...||.-+......
T Consensus 69 ~lq~qL~~LK~v~~~~~~~ 87 (100)
T PF06428_consen 69 SLQAQLKELKTVMESMESE 87 (100)
T ss_dssp HCTSSSSHHHHCTTT----
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 9999999999888755443
No 244
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=35.49 E-value=5.8e+02 Score=28.31 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHh--hHHHHHHH
Q 006962 82 QEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQS--CQSELQAI 159 (623)
Q Consensus 82 QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~--wqsEleav 159 (623)
..|.|.-+--|..-+.-+.-..+.+..+.-+|.-++++. -+-++..++-|++--++|.-+.|+--++ --||+.-.
T Consensus 219 k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~ei---t~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~ 295 (384)
T KOG0972|consen 219 KQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEI---TKALEKIASREKSLNNQLASLMQKFRRATDTLSELREK 295 (384)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777778888888888888888888765 4566777777887777777776664443 35888888
Q ss_pred hhhhhccHHH----HHHHHHHHHHHHHHHHH
Q 006962 160 QNQHSIDSAA----LASALNELQQLKAQFEM 186 (623)
Q Consensus 160 q~qhs~Dsaa----L~sal~Eiq~LK~qL~~ 186 (623)
.+|-+.++.. |...|.||+++|++.+.
T Consensus 296 y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 296 YKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988876 88889999999998875
No 245
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.34 E-value=1.5e+02 Score=29.01 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=23.1
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHH
Q 006962 437 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEML 472 (623)
Q Consensus 437 l~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~L 472 (623)
...+.++...+|..||..|..++.++..+..+.+.|
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888887766666666554444444
No 246
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=35.32 E-value=2e+02 Score=28.89 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=38.9
Q ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHh-----hHHHHHHhchhh
Q 006962 434 ESQLNNDLRKLAQAVEDLKANLMDKETELQNISEE-----NEMLKLEISKRE 480 (623)
Q Consensus 434 e~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~e-----ne~Lk~e~~k~e 480 (623)
..+|..||.+.+++|.-|+.=|..||+...-|-.. ...||..|.+.-
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~ 82 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGW 82 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHh
Confidence 47899999999999999999999999999888766 345677776543
No 247
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.32 E-value=2.1e+02 Score=27.48 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=7.9
Q ss_pred HHHhhhhhHHHHHHhhc
Q 006962 389 ELQKAKSDIEELKANLM 405 (623)
Q Consensus 389 ELKk~ksdIeELKA~LM 405 (623)
+|..++.+|.+|+..|.
T Consensus 73 el~~ld~ei~~L~~el~ 89 (169)
T PF07106_consen 73 ELAELDAEIKELREELA 89 (169)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444554444444
No 248
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.16 E-value=1e+03 Score=29.95 Aligned_cols=218 Identities=20% Similarity=0.241 Sum_probs=110.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHh
Q 006962 72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQS 151 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~ 151 (623)
...+-++.++-.+..-.+-|| +..+..|.--....+-|+.++.-.|.+.|+...+.-+
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l---~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~------------------- 386 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQL---ENLKEEARRRIEQYENQLLALEGELQEQQREAQENRE------------------- 386 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------------------
Confidence 566677777777777666776 4455555555666666666666666655544433221
Q ss_pred hHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhh
Q 006962 152 CQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKE 231 (623)
Q Consensus 152 wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~ke 231 (623)
|.|+|+.++.--.-+ -...+.++.=++.+.-...-.-.-.+++|-....+.+
T Consensus 387 ------------------------e~eqLr~elaql~a~----r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~ 438 (980)
T KOG0980|consen 387 ------------------------EQEQLRNELAQLLAS----RTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQ 438 (980)
T ss_pred ------------------------HHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222211100 0011111111222222222233455666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCc
Q 006962 232 SETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDY 311 (623)
Q Consensus 232 SeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~ 311 (623)
--+....=+...++||+.+..+++.+.-.-.-+-+-+..+.-+.++.++++.++...+..+...++....- +
T Consensus 439 ~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e--------~ 510 (980)
T KOG0980|consen 439 EHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIE--------L 510 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------H
Confidence 66666666777888888887777755555555555566666666666666655555555554333311100 0
Q ss_pred cchh---hhhhhhhhhhhhhHHHHHhhchhhHHHHHHHH
Q 006962 312 DLGQ---KIKENQDTMESKHLEEELSSLKSEVGQLRSAL 347 (623)
Q Consensus 312 ~~~~---~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaL 347 (623)
.... ..-..+.+....+|+..++....+...++..+
T Consensus 511 ~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 511 EELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0000 00111222344456666666666666666665
No 249
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=35.01 E-value=5.2e+02 Score=28.15 Aligned_cols=78 Identities=29% Similarity=0.377 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhHHHHHH---------------hhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHH
Q 006962 386 LEAELQKAKSDIEELKA---------------NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED 450 (623)
Q Consensus 386 LeaELKk~ksdIeELKA---------------~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~ 450 (623)
|..+|+.++..|+++.- .||-|=--|| .||+ +|.+..+..+.++|+.+|..-...-.+
T Consensus 182 lK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~---qENe----ElG~q~s~Gria~Le~eLAmQKs~seE 254 (330)
T KOG2991|consen 182 LKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQ---QENE----ELGHQASEGRIAELEIELAMQKSQSEE 254 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHH---HHHH----HHHhhhhcccHHHHHHHHHHHHhhHHH
Confidence 45556666666666654 4676655555 4777 667777788999999999888888888
Q ss_pred HHHhhhhhHHHHhhHHHhhH
Q 006962 451 LKANLMDKETELQNISEENE 470 (623)
Q Consensus 451 LKa~L~dke~elq~~~~ene 470 (623)
||-+-.....=++.+.++-|
T Consensus 255 lkssq~eL~dfm~eLdedVE 274 (330)
T KOG2991|consen 255 LKSSQEELYDFMEELDEDVE 274 (330)
T ss_pred HHHhHHHHHHHHHHHHHHHh
Confidence 88765544444444444433
No 250
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=34.11 E-value=3.7e+02 Score=30.10 Aligned_cols=70 Identities=24% Similarity=0.392 Sum_probs=47.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhh--------hhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 408 ETELQGISEENEGLHMQLDKNLMCQ--------RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 408 EtELQ~IsEENE~L~~ei~~~~~~~--------ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
++..+-|.|-||+|+.=-..-...+ .-..|.++|-...+-+..-|+..--.|.-+.-+.+||..|..+++
T Consensus 74 q~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4555666666776653211100011 113577788888888888888888889999999999999998887
No 251
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=34.10 E-value=2.1e+02 Score=27.07 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=32.8
Q ss_pred CchhhhHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006962 69 SRISELESQVSRLQ--------EDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE 122 (623)
Q Consensus 69 ~r~seLesql~q~Q--------eeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLee 122 (623)
-||-+||+.++.++ -+|++-|+.-..--..+.-...+|.-+.+.+++++.+|--
T Consensus 7 lrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl~ 68 (111)
T PF12001_consen 7 LRIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLLV 68 (111)
T ss_pred HHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 36889999988766 3455555554433344444555666666666666666543
No 252
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=34.05 E-value=5.5e+02 Score=26.55 Aligned_cols=52 Identities=23% Similarity=0.156 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE 122 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLee 122 (623)
-++++.++.+++..+..+..|+...+......+.++..++.++..+...+..
T Consensus 75 ~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~ 126 (334)
T TIGR00998 75 PTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQ 126 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888666666555555555555555444444443
No 253
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.94 E-value=1.9e+02 Score=30.86 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHH
Q 006962 228 ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE 286 (623)
Q Consensus 228 e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE 286 (623)
|..+-+...+..+..+..+++..+..++.|.+|-..+..-++....|||.++.|+++|.
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 254
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.74 E-value=4.6e+02 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=20.1
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhhH
Q 006962 335 SLKSEVGQLRSALEIAETKLNEGQIQST 362 (623)
Q Consensus 335 s~ksEIeeLRsaLe~~Etr~qEE~i~st 362 (623)
.++..|+.|++....+...|+.+.....
T Consensus 55 eLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 55 ELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877777776665554
No 255
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.70 E-value=9.5e+02 Score=29.22 Aligned_cols=188 Identities=23% Similarity=0.276 Sum_probs=90.0
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhh
Q 006962 332 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETEL 411 (623)
Q Consensus 332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtEL 411 (623)
..+++-+|..---+|.++ +||.|++++++.+ +..++=..|=.+.-++...+-.|+..+---++..
T Consensus 448 ~~k~ll~e~~t~gsA~ed----~Qeqn~kL~~el~-----------ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i 512 (698)
T KOG0978|consen 448 NFKCLLSEMETIGSAFED----MQEQNQKLLQELR-----------EKDDKNFKLMSERIKANQKHKLLREEKSKLEEQI 512 (698)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455554 6888888887755 2233333444444455555555555554445555
Q ss_pred hhhhhhhhhhhhhhhhh-----hhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCcc
Q 006962 412 QGISEENEGLHMQLDKN-----LMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNM 486 (623)
Q Consensus 412 Q~IsEENE~L~~ei~~~-----~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~ 486 (623)
+.+..-+..+...|.+. .-+..+.-+..+|+.+-.-+..+|- ..+.+...-+.|+.++.+.+.....+
T Consensus 513 ~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk-------~~~e~~~~~~~Lq~~~ek~~~~le~i 585 (698)
T KOG0978|consen 513 LTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKK-------KAQEAKQSLEDLQIELEKSEAKLEQI 585 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666532 1233344455555555544444444 44444455555555555333221111
Q ss_pred chhhHHHHHHHHHHH-HHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 006962 487 NSNLAAEVEAARSAE-KEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLK 547 (623)
Q Consensus 487 ~~ea~~~~e~Ak~ae-~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLr 547 (623)
-.. + ++...| ....-|+..+.||..+-++++.|+.--=- ...+-.-|.-|++..|
T Consensus 586 ~~~----~-~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~-~~s~d~~L~EElk~yK 641 (698)
T KOG0978|consen 586 QEQ----Y-AELELELEIEKFKRKRLEEELERLKRKLERLKKEES-GASADEVLAEELKEYK 641 (698)
T ss_pred HHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccHHHHHHHHHHH
Confidence 111 1 111111 22233456667777776666666542211 1223344555666554
No 256
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=33.51 E-value=6.7e+02 Score=27.40 Aligned_cols=208 Identities=15% Similarity=0.231 Sum_probs=117.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHH------HHHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEAR------AVELQKV 144 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr------~~Elqk~ 144 (623)
++.+-++...+-...+...++..+.-..+.....+..+-+.-..+++++|.+.-+.+........-+ +-.|++.
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~ 115 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLERE 115 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence 4555555556666666666666666666666777777777666666666666433332222211111 1111221
Q ss_pred hHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---HHHHHhhhcHHHHHHHHHH
Q 006962 145 SQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAH---LELQSLKGNLIETISLMEN 221 (623)
Q Consensus 145 ~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~---~ELe~lk~~laetl~lvE~ 221 (623)
-+ .|+-.+.......+-=-.-...|.+|..+|..... ++.+..+++ +++..++....+----|..
T Consensus 116 i~--------~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k----~~e~~~~~~el~aei~~lk~~~~e~~eki~~ 183 (294)
T COG1340 116 IE--------RLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK----ALEENEKLKELKAEIDELKKKAREIHEKIQE 183 (294)
T ss_pred HH--------HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12223333333333322334555567777776554 233333333 4555555444332223333
Q ss_pred HHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006962 222 MKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297 (623)
Q Consensus 222 lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a 297 (623)
|-+++.++. .-..++....+.-+.-++.+..+.++.......+.-++......+..++..+..|.+...
T Consensus 184 la~eaqe~h-------e~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~ 252 (294)
T COG1340 184 LANEAQEYH-------EEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEK 252 (294)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322221 112556666667788889999999999999999999999999999999998888887655
No 257
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.47 E-value=2.6e+02 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=24.0
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHh
Q 006962 438 NNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEI 476 (623)
Q Consensus 438 ~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~ 476 (623)
..+|..++.+|..|+..|.....++..+..+...|.+.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456788888888888855555555555555544444433
No 258
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.07 E-value=1.1e+02 Score=28.32 Aligned_cols=43 Identities=30% Similarity=0.409 Sum_probs=26.0
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
..++..|..+-.+|..||..+...-.|=+.|.-||..|+..|.
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777555555555555555555555554
No 259
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.43 E-value=1e+02 Score=28.16 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhH
Q 006962 447 AVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLM 512 (623)
Q Consensus 447 ~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ 512 (623)
....++..+.+.+.+++.+..+|..|+.+|...... . -.-|+-|..+||++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~-----~---------dyiEe~AR~~Lg~vk 79 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG-----Q---------EAIEERARNELGMVK 79 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-----H---------HHHHHHHHHHcCCCC
Confidence 345566666667778999999999999999843321 1 123455667788765
No 260
>PF14182 YgaB: YgaB-like protein
Probab=32.18 E-value=3.8e+02 Score=24.16 Aligned_cols=61 Identities=31% Similarity=0.453 Sum_probs=47.5
Q ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHh
Q 006962 255 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELS 334 (623)
Q Consensus 255 e~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~ 334 (623)
|-|.++-.+.|+.+=-|-++|| |++..|.....++. +++|.
T Consensus 3 ~~LV~eQm~tMD~LL~LQsElE----RCqeIE~eL~~l~~-----------------------------------ea~l~ 43 (79)
T PF14182_consen 3 DKLVSEQMKTMDKLLFLQSELE----RCQEIEKELKELER-----------------------------------EAELH 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----------------------------------HHhHH
Confidence 5677888888998888899998 99998887777763 34566
Q ss_pred hchhhHHHHHHHHHHHHHhh
Q 006962 335 SLKSEVGQLRSALEIAETKL 354 (623)
Q Consensus 335 s~ksEIeeLRsaLe~~Etr~ 354 (623)
+...||.+.|-.|..-..-|
T Consensus 44 ~i~~EI~~mkk~Lk~Iq~~F 63 (79)
T PF14182_consen 44 SIQEEISQMKKELKEIQRVF 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887555555
No 261
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=31.90 E-value=6.3e+02 Score=26.60 Aligned_cols=77 Identities=26% Similarity=0.386 Sum_probs=49.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHhhhhHHHHH-HHHHHHhHHhHHhhHHHHHH
Q 006962 84 DLKKAKNQLSSSESWKQQAQQDAEDSKKQ----LLALSSKLQESQKQLQELSASEEARA-VELQKVSQETDQSCQSELQA 158 (623)
Q Consensus 84 eLkkaKeQL~~sE~~K~~a~~eleEskkQ----l~e~SskLeesQkQ~~e~Sa~e~sr~-~Elqk~~q~~d~~wqsElea 158 (623)
.|-.+=+.||..|. +|+++++. +.+++.+|.+.-+.+. +.++++|. .|......+.-...|.=...
T Consensus 15 ~LN~atd~IN~lE~-------~L~~ar~~fr~~l~e~~~kL~~~~kkLg--~~I~karPYyea~~~a~~aq~e~q~Aa~~ 85 (239)
T PF05276_consen 15 KLNQATDEINRLEN-------ELDEARATFRRLLSESTKKLNELAKKLG--SCIEKARPYYEARRKAKEAQQEAQKAALQ 85 (239)
T ss_pred HHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456655554 55555543 4566778888777777 56787775 46666666666666666666
Q ss_pred HhhhhhccHHH
Q 006962 159 IQNQHSIDSAA 169 (623)
Q Consensus 159 vq~qhs~Dsaa 169 (623)
..+.++++.+|
T Consensus 86 yerA~~~h~aA 96 (239)
T PF05276_consen 86 YERANSMHAAA 96 (239)
T ss_pred HHHHHHHHHHH
Confidence 77777777666
No 262
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.39 E-value=1.1e+03 Score=29.20 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHH
Q 006962 522 AARMAEQLEAAQSANCEAEAELRRLKVQSDQWR 554 (623)
Q Consensus 522 ~ar~~EqL~aaq~a~~elEaElrrLrVQseQWR 554 (623)
.+.++.||++++.++.-+-...-+||-+-+|-|
T Consensus 225 ~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 225 LESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345677888888888888888888888888888
No 263
>PLN03188 kinesin-12 family protein; Provisional
Probab=31.14 E-value=1.3e+03 Score=30.09 Aligned_cols=141 Identities=23% Similarity=0.310 Sum_probs=96.9
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHH----------HhhhhhhhhhHHHHhhHHHHHHHHhhhcc---c--chHHHHHH
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALEIAE----------TKLNEGQIQSTVKIKSAFEQLEQIKHQSG---L--REVELEAE 389 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe~~E----------tr~qEE~i~st~~i~~aye~~e~~Kses~---q--RE~ELeaE 389 (623)
-++.|+.||..-|.=.++|..||.-|= +.|||-|+++--+-|...|-++-||..-. . .+..+.
T Consensus 1080 l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~-- 1157 (1320)
T PLN03188 1080 LAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFI-- 1157 (1320)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH--
Confidence 455688888888888888988886542 34488999988887877788888876332 2 233332
Q ss_pred HHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh-hhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHh
Q 006962 390 LQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD-KNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEE 468 (623)
Q Consensus 390 LKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~-~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~e 468 (623)
+.+-++|--|| .++|.|-+.+.+||..|+..++ ..--++---||-.-|+--++-+..-+.+-|+ +.+|
T Consensus 1158 -~alaae~s~l~---~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~-------~eqe 1226 (1320)
T PLN03188 1158 -NALAAEISALK---VEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMD-------AEQE 1226 (1320)
T ss_pred -HHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 33345555555 4799999999999999999998 3333555566666677666655555555454 4567
Q ss_pred hHHHHHHhch
Q 006962 469 NEMLKLEISK 478 (623)
Q Consensus 469 ne~Lk~e~~k 478 (623)
|+.|+++|.|
T Consensus 1227 ~~~~~k~~~k 1236 (1320)
T PLN03188 1227 AAEAYKQIDK 1236 (1320)
T ss_pred HHHHHHHHHH
Confidence 7777777763
No 264
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.89 E-value=5.3e+02 Score=27.16 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006962 79 SRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQ 121 (623)
Q Consensus 79 ~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLe 121 (623)
.++|.++++..+.++...+.|.++..+.++...+...+|..+.
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k 201 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALK 201 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888777777777777777777777765544
No 265
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.67 E-value=7.2e+02 Score=26.87 Aligned_cols=128 Identities=22% Similarity=0.211 Sum_probs=82.0
Q ss_pred hhhccHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q 006962 162 QHSIDSAALASALNELQQLK-AQFEMVAESEAA-QTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQAL 239 (623)
Q Consensus 162 qhs~DsaaL~sal~Eiq~LK-~qL~~~~esea~-al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL 239 (623)
-.++-.+.|...+++++.-- .+|....=.+.. .+.-.++|...+.=|+..|.+.+-.++.+. ..+.....-
T Consensus 123 ~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~-------~~~~~e~ek 195 (269)
T PF05278_consen 123 FRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYD-------QHETREEEK 195 (269)
T ss_pred HHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 34555666777777776521 355554433322 234445555566666666666554444442 122222222
Q ss_pred HHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006962 240 ARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297 (623)
Q Consensus 240 ~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a 297 (623)
+....+|+..+...+.+..+..+....+.-+.--+..-+.|+..||...+++.....
T Consensus 196 -e~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 196 -EEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888888888888888888888888888888888888886544
No 266
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.60 E-value=6.3e+02 Score=26.24 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 006962 74 LESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAE--------DSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVS 145 (623)
Q Consensus 74 Lesql~q~QeeLkkaKeQL~~sE~~K~~a~~ele--------EskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~ 145 (623)
|=.++..+.+-++.+++|+ ..|.+.+. +.+..-..++.+.+.+.+.....+ .|+..++...
T Consensus 26 lvdrVe~Ardsq~eaqeQF-------~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~----~RI~~vE~Va 94 (201)
T PF11172_consen 26 LVDRVEDARDSQQEAQEQF-------KSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVS----DRIDAVEDVA 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 5556677888888888888 44444443 334555666666766666554443 5777788888
Q ss_pred HHhHHhhHHHHHHHhhh
Q 006962 146 QETDQSCQSELQAIQNQ 162 (623)
Q Consensus 146 q~~d~~wqsEleavq~q 162 (623)
.-+=.+|+.||....+.
T Consensus 95 ~ALF~EWe~EL~~Y~~~ 111 (201)
T PF11172_consen 95 DALFDEWEQELDQYSNA 111 (201)
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 88889999999998765
No 267
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=30.53 E-value=31 Score=34.34 Aligned_cols=52 Identities=31% Similarity=0.472 Sum_probs=25.5
Q ss_pred hhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHH
Q 006962 403 NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKET 460 (623)
Q Consensus 403 ~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~ 460 (623)
+|-|-|..|-..-|.|=.|-.||... ..|..++++|.+++-+||-.|..+++
T Consensus 1 SLeD~EsklN~AIERnalLE~ELdEK------E~L~~~~QRLkDE~RDLKqEl~V~ek 52 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESELDEK------ENLREEVQRLKDELRDLKQELIVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHCH-------------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36688888888899999999998422 34888888888888888886655544
No 268
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.43 E-value=5.4e+02 Score=29.09 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 447 AVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 447 ~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.|..|++.|...+.++..+..+...+..++.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555555555554443
No 269
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.40 E-value=2.7e+02 Score=27.27 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=42.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhHHHH--------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 006962 70 RISELESQVSRLQEDLKKAKNQLSSSESWK--------QQAQQDAEDSKKQLLALSSKLQESQKQLQELS 131 (623)
Q Consensus 70 r~seLesql~q~QeeLkkaKeQL~~sE~~K--------~~a~~eleEskkQl~e~SskLeesQkQ~~e~S 131 (623)
|+--+-.++.++++.++.++.|..+..... .....|+++.++++.....+++..++|...+.
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888876553322 34567777777777777777777777766543
No 270
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.33 E-value=3.7e+02 Score=30.80 Aligned_cols=43 Identities=33% Similarity=0.407 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 426 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~ 426 (623)
..+-+++-...++-.-++|.+--+|.+|+.+.+||-.|+-+.-
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777788888899999999999999999999998877653
No 271
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=30.27 E-value=6e+02 Score=25.82 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHH
Q 006962 215 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKA 264 (623)
Q Consensus 215 tl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka 264 (623)
.-.+|+.|..-+.-+++....-... ..+...+..+...+..|+.....+
T Consensus 16 ~~~~i~~l~~al~~L~~~~~~~~~~-~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 16 QKALIQDLQQALSFLDEIKKQKKRA-AEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3455556665555555554444444 555666666665555555444433
No 272
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=29.53 E-value=6.5e+02 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=18.1
Q ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHH
Q 006962 255 EALRAEGMKAIEAYSSIASELERSRTRINLLE 286 (623)
Q Consensus 255 e~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE 286 (623)
..|...|.-....|......+..+++.+..+.
T Consensus 135 ~~L~~~g~is~~~~~~a~~~~~~a~~~l~~~~ 166 (334)
T TIGR00998 135 VPLFKKGLISREELDHARKALLSAKAALNAAI 166 (334)
T ss_pred HHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666666666666555543
No 273
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.49 E-value=90 Score=35.78 Aligned_cols=45 Identities=11% Similarity=0.327 Sum_probs=40.0
Q ss_pred hhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 433 RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 433 ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
+-.+|+.+|..+..++.++.+.+.+.+..|..+..||..|+.+++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 557888899999889999999999999999999999999998884
No 274
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=29.48 E-value=3.9e+02 Score=23.91 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=33.3
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHH
Q 006962 508 LGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQW 553 (623)
Q Consensus 508 l~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQW 553 (623)
+..+.+-.-+-...-++...+.-++......|..|+++|++|...=
T Consensus 26 ~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 26 LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3344444455555556667778888889999999999999987643
No 275
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.43 E-value=6.5e+02 Score=26.00 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLAL 116 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~ 116 (623)
|.+|+..-..++++-.+.+..+..++-.=.+...++.+.++|+..+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778888888888888888888888888888888877655
No 276
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=28.79 E-value=2.3e+02 Score=26.18 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhh----------hhhhhhhhhHHHHHHhhHHHHHHHH
Q 006962 383 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK----------NLMCQRESQLNNDLRKLAQAVEDLK 452 (623)
Q Consensus 383 E~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~----------~~~~~ke~el~~~l~~~~~~v~~LK 452 (623)
.+||.-.|.=.+.+-+=|+-+|.+-|.+=+.+..|=..++++... ..++.++.++..+|+.-..+|+.|.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls 82 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS 82 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 467777788888888888888887777666666666556655531 1124467789999999999999999
Q ss_pred HhhhhhHH
Q 006962 453 ANLMDKET 460 (623)
Q Consensus 453 a~L~dke~ 460 (623)
..+|..+-
T Consensus 83 ~kv~eLq~ 90 (96)
T PF11365_consen 83 GKVMELQY 90 (96)
T ss_pred hHHHHHhh
Confidence 98886553
No 277
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=28.68 E-value=8e+02 Score=26.79 Aligned_cols=97 Identities=12% Similarity=0.220 Sum_probs=54.6
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhh
Q 006962 431 CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGL 510 (623)
Q Consensus 431 ~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~ 510 (623)
.+--.+|.+.+.++...|.+.+..+.|.+.++..+......+...+.... ...+... +... ..-.++.-++..
T Consensus 66 ~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~----~~~~~~~--~n~~-~~~~~~t~~la~ 138 (301)
T PF06120_consen 66 EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG----ITENGYI--INHL-MSQADATRKLAE 138 (301)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCcchHH--HHHH-HHHHHHHHHHHH
Confidence 33446788888888888888888888877788877777766666555221 1111111 1111 112344555555
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHH
Q 006962 511 LMEEADKSNRRAARMAEQLEAAQS 534 (623)
Q Consensus 511 ~~ee~~~s~~~~ar~~EqL~aaq~ 534 (623)
++.++..-..+..++..++...|.
T Consensus 139 ~t~~L~~~~~~l~q~~~k~~~~q~ 162 (301)
T PF06120_consen 139 ATRELAVAQERLEQMQSKASETQA 162 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566655555555555555444443
No 278
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.55 E-value=5.9e+02 Score=25.25 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=26.9
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
.+.++...|-..+....+||..-++-|.++.
T Consensus 85 ~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~ 115 (159)
T PF05384_consen 85 EAHELQVRLAMLREREKQLRERRDELERRLR 115 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666888999999999999999999998884
No 279
>COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]
Probab=27.90 E-value=82 Score=28.28 Aligned_cols=46 Identities=33% Similarity=0.567 Sum_probs=33.2
Q ss_pred HHHHhhHHHHHHHhhhhhchHHHHHH-HHHHHHhhccCCCCcccccccCCCCCCC
Q 006962 531 AAQSANCEAEAELRRLKVQSDQWRKA-AEAAASMLSTGNNGKCMERSGSIDSNYN 584 (623)
Q Consensus 531 aaq~a~~elEaElrrLrVQseQWRKA-AeaAaa~Ls~g~ng~~~er~gs~d~~~~ 584 (623)
-+-.+-+.|-+|+|+. ++++|+-- +|+-|. || .||+++|+.+-.|-
T Consensus 32 iS~~~et~ia~e~~k~--~t~~WqeEN~EaiA~----~n--~~vd~~G~~~a~~R 78 (80)
T COG5302 32 ISALAETAIAAELRKS--ATDRWQEENAEAIAT----GN--RFVDVNGLFLAKYR 78 (80)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHH----Hh--hhhhhcCChhhhcc
Confidence 3445677899999976 58999976 665443 34 58999998775553
No 280
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=27.33 E-value=2.1e+02 Score=29.09 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=24.9
Q ss_pred hhhhhhhhhhhhhhhhhhhh---hhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 408 ETELQGISEENEGLHMQLDK---NLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 408 EtELQ~IsEENE~L~~ei~~---~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
.-+|-+|-.+-+.|..+|.. ...+.+...+..+|.-+.-++++++-.-.++||+|=
T Consensus 104 ~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeLy 162 (181)
T PF04645_consen 104 NLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMELY 162 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555531 112223333334444444444555554455555543
No 281
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=27.27 E-value=8.7e+02 Score=26.76 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=27.8
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhh
Q 006962 325 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ 358 (623)
Q Consensus 325 e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~ 358 (623)
.+..+.+-+..++.||..||.-|-.++..+.+..
T Consensus 223 t~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~ 256 (310)
T PF09755_consen 223 TAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKM 256 (310)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788899999999999999999998885433
No 282
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.25 E-value=1.5e+02 Score=27.46 Aligned_cols=43 Identities=30% Similarity=0.425 Sum_probs=36.1
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.+|-..|..+...+..|=+.+...-..+..+.+||..|+.|-.
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888889999988877765
No 283
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=26.44 E-value=2.8e+02 Score=23.97 Aligned_cols=31 Identities=26% Similarity=0.560 Sum_probs=17.0
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhHHHHhhH
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMDKETELQNI 465 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~dke~elq~~ 465 (623)
.-|.+..+.++..|..|+..+.+.+.++..+
T Consensus 36 KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666555555555444
No 284
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=26.19 E-value=4.1e+02 Score=29.08 Aligned_cols=104 Identities=26% Similarity=0.280 Sum_probs=0.0
Q ss_pred Hhh----hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhh
Q 006962 352 TKL----NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK 427 (623)
Q Consensus 352 tr~----qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~ 427 (623)
+|| .||-..+.-.|+.+|.-| .+--..||..|-+||.+.|.+-+++=-.=--+--+|.. .-..--
T Consensus 170 ~RYr~~lkee~d~S~k~ik~~F~~l---~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkr--------ltd~A~ 238 (302)
T PF07139_consen 170 TRYRVVLKEEMDSSIKKIKQTFAEL---QSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKR--------LTDRAS 238 (302)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHh
Q ss_pred hhhhhhhhhHHHHHH------hhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 428 NLMCQRESQLNNDLR------KLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 428 ~~~~~ke~el~~~l~------~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.|+-.+-.||.++++ +.|++|...-- +.=+.+.|+..|.
T Consensus 239 ~MsE~Ql~ELRadIK~fvs~rk~de~lg~~~r-----------f~~d~~~l~~~i~ 283 (302)
T PF07139_consen 239 QMSEEQLAELRADIKHFVSERKYDEELGRAAR-----------FTCDPEQLKKSIM 283 (302)
T ss_pred hcCHHHHHHHHHHHHHHhhhhhhHHHHhHhhh-----------cccCHHHHHHHHH
No 285
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.11 E-value=7.1e+02 Score=25.31 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=48.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhHh------hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962 203 LELQSLKGNLIETISLMENMKNQLRES------KESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 276 (623)
Q Consensus 203 ~ELe~lk~~laetl~lvE~lKs~l~e~------keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe 276 (623)
.-.+.+...+++....+..+.+.+... .-+.|+- ..+...+..-...+++|+.+....----.-+....+
T Consensus 113 ~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~----~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrd 188 (240)
T PF12795_consen 113 TRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQR----WLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRD 188 (240)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHH----HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 344555555666666666666666653 2222222 233334444455666666655544443344444455
Q ss_pred HHHHHHHhHHHHHHHHhhh
Q 006962 277 RSRTRINLLEGLVSKLEAD 295 (623)
Q Consensus 277 ~S~~r~~~LE~lvskLq~~ 295 (623)
-...+++-++..+..|+..
T Consensus 189 l~~~~~~~l~~~l~~Lq~~ 207 (240)
T PF12795_consen 189 LLKARIQRLQQQLQALQNL 207 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777753
No 286
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=25.44 E-value=2.6e+02 Score=27.62 Aligned_cols=56 Identities=11% Similarity=0.225 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQ---QAQQDAEDSKKQLLALSSKLQESQKQ 126 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~---~a~~eleEskkQl~e~SskLeesQkQ 126 (623)
+...++++.+++..+..++.++...+.... -...+++.++.++..+..+++..+.+
T Consensus 18 ~~~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 76 (265)
T TIGR00999 18 LAKMAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSE 76 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888777777755444322 24455566655555555555544443
No 287
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=25.21 E-value=1.3e+03 Score=28.54 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006962 241 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297 (623)
Q Consensus 241 ~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a 297 (623)
.++.-+|..-.+.+..++.-...+.+.+....-.|-+|-. .-.|++.-++|+.+.+
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~ 149 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNA 149 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHH
Confidence 3333444444445555555566666666677777777766 7777888888887655
No 288
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=25.21 E-value=82 Score=26.85 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 445 AQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 445 ~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
.++|..||....+.+.....+..||..||.-+.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 357888888888888899999999999998765
No 289
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.11 E-value=3.7e+02 Score=22.74 Aligned_cols=30 Identities=17% Similarity=0.471 Sum_probs=14.8
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHh
Q 006962 440 DLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEI 476 (623)
Q Consensus 440 ~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~ 476 (623)
.+..|..+|..|.. .+..|..+...|+.++
T Consensus 4 kid~Ls~dVq~L~~-------kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 4 KIDQLSSDVQTLNS-------KVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34445555555555 4444444444454444
No 290
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=25.07 E-value=7.4e+02 Score=25.20 Aligned_cols=80 Identities=11% Similarity=0.210 Sum_probs=61.4
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006962 218 LMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297 (623)
Q Consensus 218 lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a 297 (623)
.+.+=...+..++..--.+..+|.+-...|..+..+++.-..-...+...++.|..-|..++..+...+..+...+.++.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~ 140 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA 140 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666777888888899999999998888888888888888888888888888877777777776554
No 291
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=25.06 E-value=5.1e+02 Score=28.69 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----hhhhHHHHHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESW----KQQAQQDAEDSKKQLLALSSKLQESQKQLQE----LSASEEARAVELQ 142 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~----K~~a~~eleEskkQl~e~SskLeesQkQ~~e----~Sa~e~sr~~Elq 142 (623)
+.+-..+|..+..|.-++=+.|+|-|+. =+-+.++..++.-++ +++++.++|+.+ -.+.+.--+.||+
T Consensus 243 ~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~l----se~~e~y~q~~~gv~~rT~~L~eVm~e~E 318 (384)
T KOG0972|consen 243 VGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTL----SELREKYKQASVGVSSRTETLDEVMDEIE 318 (384)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666554432 123334444444443 444555666544 4556677788999
Q ss_pred HHhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Q 006962 143 KVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFE 185 (623)
Q Consensus 143 k~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~ 185 (623)
+++|+-++ |.+...|-+-|+---.-|-+||.+..
T Consensus 319 ~~KqemEe---------~G~~msDGaplvkIkqavsKLk~et~ 352 (384)
T KOG0972|consen 319 QLKQEMEE---------QGAKMSDGAPLVKIKQAVSKLKEETQ 352 (384)
T ss_pred HHHHHHHH---------hcccccCCchHHHHHHHHHHHHHHHH
Confidence 99998877 56667777777776666777776654
No 292
>PF00418 Tubulin-binding: Tau and MAP protein, tubulin-binding repeat; InterPro: IPR001084 Microtubules consist of tubulins as well as a group of additional proteins collectively known as the Microtubule Associated Proteins (MAP). MAP's have been classified into two classes: high molecular weight MAP's and Tau protein. The Tau proteins promote microtubule assembly and stabilise microtubules. The C-terminal region of these proteins contains three or four tandem repeats of a conserved domain of about thirty amino acid residues which is implicated in tubulin-binding and which seems to have a stiffening effect on microtubules.; GO: 0007026 negative regulation of microtubule depolymerization
Probab=25.06 E-value=41 Score=25.34 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=12.1
Q ss_pred cccccccCCCC-CCCCCCC
Q 006962 571 KCMERSGSIDS-NYNPITG 588 (623)
Q Consensus 571 ~~~er~gs~d~-~~~~~~g 588 (623)
++.-+|||+|+ .+-|.||
T Consensus 12 ~v~SK~GS~~N~~H~PGGG 30 (31)
T PF00418_consen 12 NVQSKCGSLDNIKHKPGGG 30 (31)
T ss_pred cccccccccccccccCCCC
Confidence 45678999997 3444554
No 293
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.65 E-value=8.8e+02 Score=25.90 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 006962 100 QQAQQDAEDSKKQLLALSSKLQESQKQLQEL 130 (623)
Q Consensus 100 ~~a~~eleEskkQl~e~SskLeesQkQ~~e~ 130 (623)
.-+.+++.++++++.++-.+|.+.+.++-..
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~ 203 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVF 203 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4455666666666666666666665555443
No 294
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=23.26 E-value=6e+02 Score=23.51 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=55.6
Q ss_pred HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHh-hhhhccccccccCCCCCccchhhhhh
Q 006962 241 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE-ADTSNANRNLSQNCSGDYDLGQKIKE 319 (623)
Q Consensus 241 ~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq-~~~a~~~~~~~~~~~~~~~~~~~~~~ 319 (623)
.++..||+=+.-..+.||--.+++.+....|..+|. +|++ +.- .+.. +.++.+.+++
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~----kyk~------~~g~~d~~-~~~~~g~~~~----------- 61 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELN----KYKS------KYGDLDSL-AKLSEGGSPS----------- 61 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH------hcCCCccc-ccCCCCCCCc-----------
Confidence 678899999999999999999999998888888887 3444 110 0000 0001011000
Q ss_pred hhhhhhhhhHHHHHhhchhhHHHHHHHHH
Q 006962 320 NQDTMESKHLEEELSSLKSEVGQLRSALE 348 (623)
Q Consensus 320 ~~~~~e~~~Le~EL~s~ksEIeeLRsaLe 348 (623)
.....++.+|+..+-+|..|.-.++
T Consensus 62 ----~~~~~l~~eLk~a~~qi~~Ls~kv~ 86 (96)
T PF11365_consen 62 ----GREAELQEELKLAREQINELSGKVM 86 (96)
T ss_pred ----cccHHHHHHHHHHHHHHHHHhhHHH
Confidence 1122488999999999999998887
No 295
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.19 E-value=2.4e+02 Score=26.41 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=28.6
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006962 435 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478 (623)
Q Consensus 435 ~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k 478 (623)
..|+..|..+-.++..||..+...-.|=+.|.-||.-|+.-+.+
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777778876666666666666666666666653
No 296
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.96 E-value=1.4e+02 Score=23.75 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 444 LAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 444 ~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
++.|-+.||++-...-.+-.++..||+.|+.++.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666688888888888888876
No 297
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=22.80 E-value=8.9e+02 Score=25.33 Aligned_cols=17 Identities=0% Similarity=0.182 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHhHHH
Q 006962 271 IASELERSRTRINLLEG 287 (623)
Q Consensus 271 l~~eLe~S~~r~~~LE~ 287 (623)
....+..+++.+...+.
T Consensus 112 ~~~~l~~ak~~l~~a~~ 128 (331)
T PRK03598 112 ARAAVKQAQAAYDYAQN 128 (331)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 298
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.64 E-value=5.4e+02 Score=22.75 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHH
Q 006962 212 LIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIAS 273 (623)
Q Consensus 212 laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~ 273 (623)
+.+-+.+-+.+|.....++.-.++-+.+ ++-..++-.+...++.|..++..+...+..+..
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~-sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNEL-SKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777776666 444444444444455566655555543333333
No 299
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.64 E-value=8.1e+02 Score=24.79 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=20.7
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHH
Q 006962 163 HSIDSAALASALNELQQLKAQFEMVA 188 (623)
Q Consensus 163 hs~DsaaL~sal~Eiq~LK~qL~~~~ 188 (623)
|..|+..|.+.++++=.+|.......
T Consensus 84 ~GFnV~~l~~RL~kLL~lk~~~~~~~ 109 (190)
T PF05266_consen 84 HGFNVKFLRSRLNKLLSLKDDQEKLL 109 (190)
T ss_pred cCCccHHHHHHHHHHHHHHHhHHHHH
Confidence 88999999999999887777665433
No 300
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.50 E-value=7.1e+02 Score=24.08 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=80.6
Q ss_pred HHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccc
Q 006962 221 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 300 (623)
Q Consensus 221 ~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~ 300 (623)
.=...+..++..-.....+++-..-+|.........++.+.......+..++.+|...+..-..+.....+|+.......
T Consensus 60 ERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~ 139 (177)
T PF13870_consen 60 ERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLG 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444445554444555555888888888888888888888888888999999999888888888888888876433111
Q ss_pred cccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962 301 RNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN 355 (623)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q 355 (623)
.|.-- .+.....+++..++..|..|+..+.+++.+++
T Consensus 140 ----~P~ll--------------~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 140 ----VPALL--------------RDYDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred ----CcHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11110 12233455666788888888888888887765
No 301
>PF14282 FlxA: FlxA-like protein
Probab=22.46 E-value=3.8e+02 Score=24.48 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=30.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006962 68 PSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124 (623)
Q Consensus 68 ~~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQ 124 (623)
...|..|+-|+..|++.|+.+...-......| .......+.|+..+...|...|
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k---~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQK---QQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888887776422222222 2333444455555555544443
No 302
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=2.2e+02 Score=25.27 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=41.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS 131 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~S 131 (623)
.||.+||.++.---.=+..+.++| ..-+..++--+.|+.-+-.+|.++|-+.-...
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~l-------aEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~~ 63 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDAL-------AEQQLVIDKLQAQLRLLTEKLKDLQPSAIASP 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 488999999876556677778888 55556677778888888888888876655443
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.35 E-value=1.2e+03 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006962 172 SALNELQQLKAQFEMVAE 189 (623)
Q Consensus 172 sal~Eiq~LK~qL~~~~e 189 (623)
.-.+||..||++|+.+-+
T Consensus 273 lHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 273 LHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 345899999999987554
No 304
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.15 E-value=5.3e+02 Score=22.46 Aligned_cols=47 Identities=36% Similarity=0.373 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhhH-HHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 006962 495 EAARSAEKEALMKLGLLM-EEADKSNRRAARMAEQLEAAQSANCEAEA 541 (623)
Q Consensus 495 e~Ak~ae~ea~~kl~~~~-ee~~~s~~~~ar~~EqL~aaq~a~~elEa 541 (623)
..+++.=+.++.||++|+ ||.|--....++..++|++-++--.+||+
T Consensus 31 ~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 31 KNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667788999999996 67799999999999999998887777764
No 305
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=22.13 E-value=7.4e+02 Score=24.11 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 006962 74 LESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALS 117 (623)
Q Consensus 74 Lesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~S 117 (623)
|+.+-..+.+++..+.+....++..+.++...+.+++++..++-
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii 94 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIV 94 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777776666666666666666666554443
No 306
>PRK10869 recombination and repair protein; Provisional
Probab=21.96 E-value=1.3e+03 Score=26.81 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHH---HHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHH
Q 006962 213 IETISLMENMKNQLRESKESETQAQALARETLLQ---LETAKLSVEALRAEGMKAIEAYSSIASELERSRTR 281 (623)
Q Consensus 213 aetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~Q---LE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r 281 (623)
.+.|..+-.|+.+-.- +-..+.....++..+ |+.....++.|.....++...|..++..|-..|.+
T Consensus 302 e~Rl~~l~~L~rKyg~---~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 302 EQRLSKQISLARKHHV---SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666552 222333333333433 45667778899999999999999999888766665
No 307
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.67 E-value=5.3e+02 Score=22.24 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006962 73 ELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE 122 (623)
Q Consensus 73 eLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLee 122 (623)
.|++.+..+|.+|.-+-.++...+...+.+..|=.-+-.++..+.....+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~ 51 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNK 51 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999888888888877777777766666544333
No 308
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.59 E-value=1.8e+03 Score=28.39 Aligned_cols=298 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 006962 76 SQVSRLQEDLKKAKNQLSSSESWKQQAQQD----------------AEDSKKQLLALSSKLQESQKQLQELSASEEARAV 139 (623)
Q Consensus 76 sql~q~QeeLkkaKeQL~~sE~~K~~a~~e----------------leEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~ 139 (623)
.++...+++.+..+.++..+.+..+.++.+ +.+-.+++...++.|.+.|+++.....-......
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~ 137 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISD 137 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred HHHHHhHHhHHhhHHHHHHHhhh--------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhc
Q 006962 140 ELQKVSQETDQSCQSELQAIQNQ--------HSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGN 211 (623)
Q Consensus 140 Elqk~~q~~d~~wqsEleavq~q--------hs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~ 211 (623)
-++.+-|.- -+-+..+..++++ .+..-+....--.|...++.++.+-.-.-..+...-+-++++.+-++..
T Consensus 138 ~l~~~pq~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~ 216 (1109)
T PRK10929 138 SLSQLPQQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKR 216 (1109)
T ss_pred HHhhchhhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHH-HHHHHhHhHH-------HHHHHhhhHHHHHHhhhHHHHHHHHHHHH
Q 006962 212 LIETISLMENMKNQLRESKESETQAQALARETL-LQLETAKLSV-------EALRAEGMKAIEAYSSIASELERSRTRIN 283 (623)
Q Consensus 212 laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~-~QLE~akatv-------e~L~adg~Ka~e~~~sl~~eLe~S~~r~~ 283 (623)
+...-..++.|++.+..-...+++...--.+.. .+.......+ ..|-......-...+.+..+-.+.+..+.
T Consensus 217 ~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~ 296 (1109)
T PRK10929 217 SQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTL 296 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhch---hhHHHHHHHHHHHHHhhhhhhhh
Q 006962 284 LLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLK---SEVGQLRSALEIAETKLNEGQIQ 360 (623)
Q Consensus 284 ~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~k---sEIeeLRsaLe~~Etr~qEE~i~ 360 (623)
.+.+..+.++....-..+|. .-.--...+....-...-..+|..++..++ .++++.|-.+-+-..-.++....
T Consensus 297 ~~~q~~~~i~eQi~~l~~S~----~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdlRl~~f~~~q~~~~l~~i~~~~~~~~~~ 372 (1109)
T PRK10929 297 QVRQALNTLREQSQWLGVSN----ALGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQADGQP 372 (1109)
T ss_pred HHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccCC
Q ss_pred hHHHHhhHHHHHHHHhhh
Q 006962 361 STVKIKSAFEQLEQIKHQ 378 (623)
Q Consensus 361 st~~i~~aye~~e~~Kse 378 (623)
.|-..+.+++.+=....+
T Consensus 373 ~t~~~~~~l~~ll~~rr~ 390 (1109)
T PRK10929 373 LTAEQNRILDAQLRTQRE 390 (1109)
T ss_pred CCHHHHHHHHHHHHHHHH
No 309
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=21.34 E-value=1.1e+03 Score=25.78 Aligned_cols=122 Identities=18% Similarity=0.109 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHh
Q 006962 72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQS 151 (623)
Q Consensus 72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~ 151 (623)
.+++.++.+++.+|..++.++......-..++..+..++.++..+...++-.++-+.....+..
T Consensus 95 ~~~~~~l~~A~a~l~~a~~~~~~~~~~~~~~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~---------------- 158 (390)
T PRK15136 95 TDAEQAFEKAKTALANSVRQTHQLMINSKQYQANIELQKTALAQAQSDLNRRVPLGNANLIGRE---------------- 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHH----------------
Q ss_pred hHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHH
Q 006962 152 CQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIET 215 (623)
Q Consensus 152 wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laet 215 (623)
+++..+.+...--+.+..+...+...+.++.........++.. +.++++.++.++..+
T Consensus 159 ---~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~v~~---a~a~l~~a~~~L~~t 216 (390)
T PRK15136 159 ---ELQHARDAVASAQAQLDVAIQQYNANQAMILNTPLEDQPAVQQ---AATEVRNAWLALQRT 216 (390)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH---HHHHHHHHHHHHhCC
No 310
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.09 E-value=1.1e+03 Score=27.44 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 425 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei 425 (623)
..++++-+....-...|-..+-+=..+|+.+-|+|..|....
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444444555555555666666667777776544
No 311
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.86 E-value=9.7e+02 Score=25.02 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Q 006962 170 LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLET 249 (623)
Q Consensus 170 L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~ 249 (623)
|-.-+.+++++|..|-...++-..--.+..++..+...|. .|..+++|.||.--.|...- ..++.......+.
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~---~Er~~h~eeLrqI~~DIn~l----E~iIkqa~~er~~ 78 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELL---QERMAHVEELRQINQDINTL----ENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3445667777777776544433333333333333333332 33334444444333333221 1222233333344
Q ss_pred hHhHHHHHHHhhhHHHHHHhhhHHH-HHHHH
Q 006962 250 AKLSVEALRAEGMKAIEAYSSIASE-LERSR 279 (623)
Q Consensus 250 akatve~L~adg~Ka~e~~~sl~~e-Le~S~ 279 (623)
....|..|..+...+++.++.++.+ |..+.
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4556677777888888888888877 65554
No 312
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.80 E-value=5.6e+02 Score=22.26 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHH
Q 006962 238 ALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASE 274 (623)
Q Consensus 238 aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~e 274 (623)
.+++.+..+..++--||..|+-+...+++.+.++..+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e 40 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEE 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3456666666677777777777777777666665533
No 313
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.73 E-value=1.1e+03 Score=25.49 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccc
Q 006962 234 TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDL 313 (623)
Q Consensus 234 Aqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~ 313 (623)
.....-+.++...+.....-|+.|-......+.-...+.-+.+++...++.|+..+..+..+..
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~---------------- 97 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV---------------- 97 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q ss_pred hhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhh
Q 006962 314 GQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKA 393 (623)
Q Consensus 314 ~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ 393 (623)
..+...+ .++|+.-+..-+-+ ||..-+.=+|--+++.++-.-+.==.++
T Consensus 98 -------~r~~~l~-------------~raRAmq~nG~~t~---Yidvil~SkSfsD~IsRvtAi~~iv~aD-------- 146 (265)
T COG3883 98 -------ERQELLK-------------KRARAMQVNGTATS---YIDVILNSKSFSDLISRVTAISVIVDAD-------- 146 (265)
T ss_pred -------HHHHHHH-------------HHHHHHHHcCChhH---HHHHHHccCcHHHHHHHHHHHHHHHHHh--------
Q ss_pred hhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHH
Q 006962 394 KSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK 473 (623)
Q Consensus 394 ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk 473 (623)
+.-|+.+|..=-+-|+.=..+-+.++.|..-+ .++...+..|+....+++.-++..=........|-..|.
T Consensus 147 k~ile~qk~dk~~Le~kq~~l~~~~e~l~al~---------~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 147 KKILEQQKEDKKSLEEKQAALEDKLETLVALQ---------NELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHhchhhccCCccchhhHHHHHHHHHHH
Q 006962 474 LEISKRELDTPNMNSNLAAEVEAARSAE 501 (623)
Q Consensus 474 ~e~~k~e~~~~~~~~ea~~~~e~Ak~ae 501 (623)
.+-. .+.+....++..+
T Consensus 218 ~qka-----------~a~a~a~~~a~~~ 234 (265)
T COG3883 218 EQKA-----------LAEAAAAEAAKQE 234 (265)
T ss_pred HHHH-----------HHHHHHHHHHHhh
No 314
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.68 E-value=1.4e+02 Score=35.09 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhcc
Q 006962 442 RKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 482 (623)
Q Consensus 442 ~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~ 482 (623)
||..+.+.-|+++|-..+.|-+.|..||.+||.+|.-...|
T Consensus 298 kKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 298 KKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 45567888999999999999999999999999999855554
No 315
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=20.43 E-value=1.3e+03 Score=26.40 Aligned_cols=123 Identities=18% Similarity=0.125 Sum_probs=75.5
Q ss_pred ccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhh--hhHHHHHHHHH
Q 006962 165 IDSAALASA-LNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESK--ESETQAQALAR 241 (623)
Q Consensus 165 ~DsaaL~sa-l~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~k--eSeAqa~aL~~ 241 (623)
.|+-.+..+ +.+=+++=++|..-. +-.....|..|+..+...+.++-..+-.|++.-.-++ ..-.-...+++
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~ra-----r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~ 289 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARM-----QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIA 289 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHH
Confidence 344444333 344556666665422 2233445667888888888888888888988765554 22222234557
Q ss_pred HHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhcc
Q 006962 242 ETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 299 (623)
Q Consensus 242 E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~ 299 (623)
.+..||-..++....|++-..--- -.+-+-+.++..||..+.....++.+.
T Consensus 290 ~Le~qLa~~~aeL~~L~~~~~p~s-------PqV~~l~~rI~aLe~QIa~er~kl~~~ 340 (434)
T PRK15178 290 GFETQLAEAKAEYAQLMVNGLDQN-------PLIPRLSAKIKVLEKQIGEQRNRLSNK 340 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCC-------CchhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777777777777777755321111 124455678888999998888887643
No 316
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.25 E-value=6.6e+02 Score=22.84 Aligned_cols=61 Identities=31% Similarity=0.373 Sum_probs=38.7
Q ss_pred HHHHHhhchhhHHHHHHHHHH--HHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHH
Q 006962 329 LEEELSSLKSEVGQLRSALEI--AETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 402 (623)
Q Consensus 329 Le~EL~s~ksEIeeLRsaLe~--~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA 402 (623)
+..+...++.||.-||..++- -=|||--||+++. |++.+.++-+.++|-|. +-..|.+|+.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~-------ee~rrl~~f~~~gerE~------l~~eis~L~~ 84 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLR-------EELRRLQSFYVEGEREM------LLQEISELRD 84 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHH------HHHHHHHHHh
Confidence 344456788888888887763 2356666666554 66667788777666663 3345555553
No 317
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.22 E-value=3.9e+02 Score=22.62 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLL 114 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~ 114 (623)
|+.|-+++.|++.|..-++-.+ ..|.+|+.-+-..+.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v-------~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV-------QAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 5666677777777777666655 566666666655544
Done!