Query 006962
Match_columns 623
No_of_seqs 83 out of 85
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006962.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006962hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 54.6 40 0.0029 26.1 9.5 44 511-554 135-178 (185)
2 d2fqma1 d.378.1.1 (A:107-171) 33.1 7.8 0.00057 30.0 1.5 14 547-560 26-39 (65)
3 d1vf7a_ f.46.1.1 (A:) Multidru 19.2 1.4E+02 0.0099 25.1 7.4 56 71-126 48-106 (237)
4 d1seta1 a.2.7.1 (A:1-110) Sery 17.6 2E+02 0.014 22.5 7.6 31 326-356 66-96 (110)
5 d1seta1 a.2.7.1 (A:1-110) Sery 14.6 2.3E+02 0.017 22.0 7.3 66 384-464 31-96 (110)
6 d1ab4a_ e.11.1.1 (A:) DNA Gyra 13.1 3E+02 0.022 27.1 9.2 59 418-477 427-485 (493)
7 d1czan2 c.55.1.3 (N:223-465) M 12.9 10 0.00076 35.1 -2.0 19 563-581 7-25 (243)
8 d1czan4 c.55.1.3 (N:671-913) M 12.5 12 0.00084 34.7 -1.8 19 563-581 7-25 (243)
9 d2ncda_ c.37.1.9 (A:) Kinesin 12.1 1.2E+02 0.0089 28.6 5.5 42 69-110 3-44 (368)
10 d1nkpa_ a.38.1.1 (A:) Myc prot 11.4 1.5E+02 0.011 22.4 5.0 38 440-477 46-83 (88)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=54.64 E-value=40 Score=26.11 Aligned_cols=44 Identities=7% Similarity=0.071 Sum_probs=23.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHH
Q 006962 511 LMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWR 554 (623)
Q Consensus 511 ~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWR 554 (623)
+...+.........+.+++.........++.++..+.-...+|.
T Consensus 135 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 178 (185)
T d2ap3a1 135 LFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQ 178 (185)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555556666666666666665555555554443
No 2
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=33.09 E-value=7.8 Score=30.02 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=12.2
Q ss_pred hhchHHHHHHHHHH
Q 006962 547 KVQSDQWRKAAEAA 560 (623)
Q Consensus 547 rVQseQWRKAAeaA 560 (623)
+||++||+|--+|-
T Consensus 26 ~~Q~~QW~~TIeav 39 (65)
T d2fqma1 26 GEQKSQWMLTIKAV 39 (65)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 68999999998864
No 3
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.18 E-value=1.4e+02 Score=25.06 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006962 71 ISELESQVSRLQEDLKKAKNQLSSSESWK---QQAQQDAEDSKKQLLALSSKLQESQKQ 126 (623)
Q Consensus 71 ~seLesql~q~QeeLkkaKeQL~~sE~~K---~~a~~eleEskkQl~e~SskLeesQkQ 126 (623)
-++|+.++.+++-++..++.++......- ...+.++..++.++..+...|+.++.+
T Consensus 48 ~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~~a~~~ 106 (237)
T d1vf7a_ 48 PATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARIN 106 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHHHHhhh
Confidence 47788888888888888777764333211 113344444444444444444444433
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.64 E-value=2e+02 Score=22.49 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=23.1
Q ss_pred hhhHHHHHhhchhhHHHHHHHHHHHHHhhhh
Q 006962 326 SKHLEEELSSLKSEVGQLRSALEIAETKLNE 356 (623)
Q Consensus 326 ~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qE 356 (623)
...+.++++.++.+|..|-..+...+.++++
T Consensus 66 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 66 KEALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447778888888888888888777776653
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=14.57 E-value=2.3e+02 Score=22.05 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962 384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463 (623)
Q Consensus 384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq 463 (623)
.+|..+.+.+...++.|++.- ..+..+|.+. ....-.++..+.+.+..+|..|...+-..+.++.
T Consensus 31 ~~ld~~rr~l~~~~e~l~~~r--------------N~~sk~i~k~-~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 31 LALDREVQELKKRLQEVQTER--------------NQVAKRVPKA-PPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666642 2233445421 1122234555555555555555554444444443
Q ss_pred h
Q 006962 464 N 464 (623)
Q Consensus 464 ~ 464 (623)
.
T Consensus 96 ~ 96 (110)
T d1seta1 96 A 96 (110)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=13.14 E-value=3e+02 Score=27.12 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=45.7
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 418 NEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 418 NE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
|-.|.|.|. ++......+|..|+..+..++.+|+.-|-+.+.-...+..|...++...+
T Consensus 427 ~~IL~MrL~-~LT~le~~kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~EL~~lk~kfg 485 (493)
T d1ab4a_ 427 QAILDLRLQ-KLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFG 485 (493)
T ss_dssp HHHHTCCGG-GGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 556777775 34445568899999999999999998887777777778788888877764
No 7
>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.91 E-value=10 Score=35.05 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=16.3
Q ss_pred hhccCCCCcccccccCCCC
Q 006962 563 MLSTGNNGKCMERSGSIDS 581 (623)
Q Consensus 563 ~Ls~g~ng~~~er~gs~d~ 581 (623)
+|++|.|+.++|++..+.+
T Consensus 7 IlGTGtNacy~e~~~~i~~ 25 (243)
T d1czan2 7 IIGTGTNACYMEELRHIDL 25 (243)
T ss_dssp EESSSEEEEEEEEGGGCTT
T ss_pred EEeCCceEEEEeEcccCCc
Confidence 6789999999999887765
No 8
>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.45 E-value=12 Score=34.73 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.0
Q ss_pred hhccCCCCcccccccCCCC
Q 006962 563 MLSTGNNGKCMERSGSIDS 581 (623)
Q Consensus 563 ~Ls~g~ng~~~er~gs~d~ 581 (623)
+|++|.|+.++|++..+.+
T Consensus 7 IlGTGtNacY~e~~~~i~k 25 (243)
T d1czan4 7 IVGTGSNACYMEEMKNVEM 25 (243)
T ss_dssp EESSSEEEEEEEETTTCTT
T ss_pred EEeCCceEEEEEEcccCcc
Confidence 6889999999999877654
No 9
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.05 E-value=1.2e+02 Score=28.56 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 006962 69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSK 110 (623)
Q Consensus 69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEsk 110 (623)
.++.||...+.|+.-++..+++||......++++..++.+.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 44 (368)
T d2ncda_ 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 44 (368)
T ss_dssp SSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 467889999999999999999999888888887777776644
No 10
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.41 E-value=1.5e+02 Score=22.45 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=29.2
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962 440 DLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477 (623)
Q Consensus 440 ~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~ 477 (623)
=|..-.+.|..|+..+-....++..+..+|..|..++.
T Consensus 46 iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677888888777777788888888888888776
Done!