BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006963
(623 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578347|ref|XP_002530040.1| ATP binding protein, putative [Ricinus communis]
gi|223530456|gb|EEF32340.1| ATP binding protein, putative [Ricinus communis]
Length = 710
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/585 (72%), Positives = 477/585 (81%), Gaps = 16/585 (2%)
Query: 51 SNGTSLRH-VTRTLSNDDEPPAAGSP-MVSSASAVASAIRRTSTSPIEFLQTIETDQKRC 108
+N +SL H VTRTL N EP + P M+SSASAVASAIR TS SPIEF+Q +E K
Sbjct: 130 NNTSSLLHRVTRTLPNG-EPELSSPPEMLSSASAVASAIRNTSNSPIEFVQKMEKSDK-S 187
Query: 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV-NAT 167
LVLPS DF+RLC+EQL LFRRIVDPDA+LSVYVRPAGSYVMDRLELRRV SYPG+ +A+
Sbjct: 188 KLVLPSLDFRRLCIEQLDLFRRIVDPDAILSVYVRPAGSYVMDRLELRRVTSYPGIISAS 247
Query: 168 DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMEL- 226
D+V+LVG FN+P GLRAAEAAL+SQQV VP+ RAVVFPMVKHPFVVGFLVAELP MEL
Sbjct: 248 DVVILVGTFNIPTGLRAAEAALASQQVNFVPDHRAVVFPMVKHPFVVGFLVAELPTMELV 307
Query: 227 ------QMCGTEEPDAAIGFQSSEEVYAFPPSFDT-ESHAIESFDHERMRVYKFSADQRL 279
Q G E + + FQS EE Y P S D +S I++ + E R+Y FSA+QRL
Sbjct: 308 PSYENVQTKGHE--NDLVPFQSPEEAYPLPSSPDNNKSWTIQTLNDESFRMYNFSAEQRL 365
Query: 280 NAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR 339
NAINI RSLAMAYVMDQK+MLLQQSSWQNN RMSNLVEQIRGPLSSIQTLSKMLS H+KR
Sbjct: 366 NAINISRSLAMAYVMDQKAMLLQQSSWQNNVRMSNLVEQIRGPLSSIQTLSKMLSTHLKR 425
Query: 340 SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRS 399
SEISYDIVEDIMVQGDRLR TLQELQDAV LTKANI+RYNEE L++++NS Y H ES+ S
Sbjct: 426 SEISYDIVEDIMVQGDRLRDTLQELQDAVHLTKANIMRYNEEALQRIHNSNYHHHESLGS 485
Query: 400 QLSNNFSRE-NSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
LS+N R+ + N L NS KP SL+ P D+EMPMPP+ALAPL+Q GIRPCNV +VL D
Sbjct: 486 HLSDNIPRDADDSNNLHNSGKPHSLNVPLDDLEMPMPPMALAPLQQYGIRPCNVYEVLSD 545
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L AV+PL QQR + LSELSQSL VA+EE ALRQALSNLIEGAL+RT+VGGKVEIV
Sbjct: 546 LVGAVQPLTFKQQRNIVLSELSQSLQVAIEEQALRQALSNLIEGALLRTRVGGKVEIVCT 605
Query: 519 AAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 578
APAG ALV+IDDDGPDMHYMTQMHSL PFG+EL SENM+EDNMTWNFVAGLTVARE+LE
Sbjct: 606 EAPAGGALVIIDDDGPDMHYMTQMHSLAPFGAELLSENMIEDNMTWNFVAGLTVAREILE 665
Query: 579 SYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNET 623
SYGCVVR+ISP TDAALG+GGT++ELWLPS A LSDLN +ET
Sbjct: 666 SYGCVVRIISPRITDAALGTGGTQIELWLPSFAALSDLNDIVHET 710
>gi|225424657|ref|XP_002282396.1| PREDICTED: uncharacterized protein LOC100249068 [Vitis vinifera]
gi|296081359|emb|CBI16792.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/633 (66%), Positives = 489/633 (77%), Gaps = 33/633 (5%)
Query: 7 TAVTPKTPLSKDHT------CCLLFCPNYHP--KFCA--SLNPKPL--TTSPKSLS---- 50
+AVTP+T + + C LL CPN H FC KPL T S SL+
Sbjct: 4 SAVTPQTLVGNSGSNTTSSNCNLLVCPNNHKVHSFCRPNGFTQKPLILTNSSNSLANNTS 63
Query: 51 ------SNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETD 104
SN +LRH + T S++ E MV+SASAVASAIRR STSP++F+Q IE +
Sbjct: 64 QLQNPNSNSKTLRHDSLTDSDETE-----GAMVASASAVASAIRRASTSPVDFIQRIEKN 118
Query: 105 QKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV 164
QK LVLPSPDFQRLC+EQL LF RIVDP+A+LSVYVRPAGSYVMDRLELRRV YPGV
Sbjct: 119 QKN-GLVLPSPDFQRLCLEQLDLFHRIVDPNALLSVYVRPAGSYVMDRLELRRVTFYPGV 177
Query: 165 NATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLM 224
N DIV+LVGNF++P G R AEAALS+QQ +V+PE RAVVFPMVKHPFVVGFLVAELP++
Sbjct: 178 NGADIVILVGNFSIPTGFRVAEAALSNQQAEVIPECRAVVFPMVKHPFVVGFLVAELPMV 237
Query: 225 ELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINI 284
E + E S +E YA PP D + I++ + E ++ YKF+ +QRLNAINI
Sbjct: 238 EDE----RERHPVTHCTSPDESYALPPQSDMKLGEIQALEEEGLKSYKFTEEQRLNAINI 293
Query: 285 CRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISY 344
RSLAMAYVMDQK+MLLQQSSWQNN RMS+LVEQIRGPLSSI+TLSKMLSLHMKRSEI+
Sbjct: 294 SRSLAMAYVMDQKAMLLQQSSWQNNVRMSDLVEQIRGPLSSIRTLSKMLSLHMKRSEIAN 353
Query: 345 DIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNN 404
DIVEDI+VQGDR+R LQ+LQDAV LTKANIVRYNEETLKKM S Y+H +S+ +QLS+N
Sbjct: 354 DIVEDIVVQGDRMRDALQQLQDAVHLTKANIVRYNEETLKKMYKSTYAHADSV-NQLSDN 412
Query: 405 FSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVR 464
F RE S +K + S +PLSL + A D++MP PPLALA + Q+GIRPCNV D+L DL AV+
Sbjct: 413 FWRETSSSKAEESGEPLSLTSAANDLDMPTPPLALARVSQHGIRPCNVYDILADLVGAVK 472
Query: 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
PLAH QQR+VEL SQ+L VAVEEPALRQALSNLIEGAL+RT+VGGKVEI+S PAG
Sbjct: 473 PLAHKQQREVELIGRSQTLQVAVEEPALRQALSNLIEGALLRTRVGGKVEILSTGTPAGG 532
Query: 525 ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
A VVIDDDGPDMHYMTQMHSLTPFG++LFS+NM+EDNMTWNFVAGLTVA E+LESYGCVV
Sbjct: 533 AFVVIDDDGPDMHYMTQMHSLTPFGADLFSDNMLEDNMTWNFVAGLTVACEILESYGCVV 592
Query: 585 RVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 617
VISP TDAALG+GGTRV++ LPS SDLN
Sbjct: 593 HVISPRSTDAALGAGGTRVKILLPSLDAASDLN 625
>gi|449434987|ref|XP_004135277.1| PREDICTED: uncharacterized protein LOC101223159 [Cucumis sativus]
gi|449520695|ref|XP_004167369.1| PREDICTED: uncharacterized LOC101223159 [Cucumis sativus]
Length = 627
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/563 (65%), Positives = 447/563 (79%), Gaps = 20/563 (3%)
Query: 54 TSLRHVTRTL--SNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLV 111
T LRHV+ T+ ++DD GS MV SASAVASAI + STSP++F+ IE Q LV
Sbjct: 62 TLLRHVSHTVRDTHDD-----GS-MVPSASAVASAILKASTSPVDFVHRIENSQN-TGLV 114
Query: 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV 171
LPSPDFQRLC+EQL LFRRIVDPDA+LSVYVRPAGSYVMDRLELRRV S+PGVN TD+V+
Sbjct: 115 LPSPDFQRLCIEQLDLFRRIVDPDALLSVYVRPAGSYVMDRLELRRVASFPGVNVTDVVI 174
Query: 172 LVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMC-- 229
LVGNF++P GLRAAEAA SSQQV+V+ E +A+VFPMVKHPFVVGFLVAELP +E++ C
Sbjct: 175 LVGNFSVPTGLRAAEAAFSSQQVEVISEHKAIVFPMVKHPFVVGFLVAELPNLEMETCLD 234
Query: 230 ---GTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICR 286
+P + S E A +H + + ++ Y F+AD + NA +I R
Sbjct: 235 MQSADRDP---WSYSSPHEAGALVAGSGISTHGFHNATNGSLKTYMFNADSQENAFHISR 291
Query: 287 SLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDI 346
SLAMAYVMDQK+MLLQQSSWQNN RM+NLV+QIRG LSSIQ+LSKMLS+HMK++EI+Y+I
Sbjct: 292 SLAMAYVMDQKAMLLQQSSWQNNLRMTNLVDQIRGSLSSIQSLSKMLSVHMKKNEIAYEI 351
Query: 347 VEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFS 406
+EDI++QGD +R TLQ+LQDAV+LTKANIV YNEETLKKM S+ ES+++QL +NF
Sbjct: 352 LEDILLQGDYMRNTLQQLQDAVYLTKANIVHYNEETLKKMYKSSNPLSESVKNQL-DNFP 410
Query: 407 RENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466
+ S +++ +S + +D+EMPMPP LAP+++ GIR CNVSDVL DL EAV+PL
Sbjct: 411 TDASNPRMKGGL--VSSNNTVRDMEMPMPPTILAPIQRQGIRSCNVSDVLIDLVEAVKPL 468
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
A QQR VELSE + S+ +AVEE +LRQALSNLIEGAL+RT+VGGKVEI+S AAPAG AL
Sbjct: 469 ARKQQRIVELSEQACSMQIAVEESSLRQALSNLIEGALLRTRVGGKVEIISTAAPAGGAL 528
Query: 527 VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV 586
+V+DDDGPDMHYMTQMHSLTPFG++L S+ VEDNMTWNFVAGLTVA E+LESYGCVVRV
Sbjct: 529 IVVDDDGPDMHYMTQMHSLTPFGADLLSKERVEDNMTWNFVAGLTVACEILESYGCVVRV 588
Query: 587 ISPWKTDAALGSGGTRVELWLPS 609
ISP +DAALGSGGTR+ELWLPS
Sbjct: 589 ISPRCSDAALGSGGTRLELWLPS 611
>gi|18408874|ref|NP_564908.1| chloroplast sensor kinase [Arabidopsis thaliana]
gi|332196584|gb|AEE34705.1| chloroplast sensor kinase [Arabidopsis thaliana]
Length = 611
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/608 (63%), Positives = 465/608 (76%), Gaps = 31/608 (5%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTE---EPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ + E +P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S ++ V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRVK-----LPSVKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQIRGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHL 368
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N + H E+ RS+ + ++ + Q S LSL + D
Sbjct: 369 TKANIVRHNEEALKKINKT---HNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 421
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP 490
EMPMPPLALAPL+ + IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEP
Sbjct: 422 EMPMPPLALAPLQMHSIRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEP 481
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDDDGPDM YMTQMHSLTPFG+
Sbjct: 482 ALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFGA 541
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS- 609
EL SENMVEDNMTWNFVAGLTVARE+LESYGCV+RVISP +DAALG+GGTRVELWLP+
Sbjct: 542 ELLSENMVEDNMTWNFVAGLTVAREILESYGCVIRVISPRSSDAALGAGGTRVELWLPAF 601
Query: 610 PAPLSDLN 617
PA +S+ N
Sbjct: 602 PAAVSEAN 609
>gi|297838533|ref|XP_002887148.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp.
lyrata]
gi|297332989|gb|EFH63407.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp.
lyrata]
Length = 610
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/567 (65%), Positives = 448/567 (79%), Gaps = 17/567 (2%)
Query: 56 LRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSP 115
LR+V RT+SN++ P G MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSP
Sbjct: 54 LRYVNRTVSNEESEPGGGETMVASASAIASAIRGASTTPVEFTQIIEKDHLKTKIILPSP 113
Query: 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGN 175
DFQRLC+EQL LFR+IVDP+AVLS+YVRPAGSYVMDRLELRRV YP VN D+V+LVGN
Sbjct: 114 DFQRLCLEQLDLFRQIVDPNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNTGDVVILVGN 173
Query: 176 FNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEE-- 233
F +PAGLRAAEA+LSSQQV++V + RA VFPMVKHPFVVGFLVAELP+ + E+
Sbjct: 174 FGIPAGLRAAEASLSSQQVELVNKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEKEE 233
Query: 234 --PDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMA 291
P F S EE YA P S +T+S ++ V F+A+QR AINI R+LAMA
Sbjct: 234 EKPHGLKHFPSPEEAYALPASANTKSPKVK-----LPSVKVFTAEQRSYAINISRTLAMA 288
Query: 292 YVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIM 351
YVMDQK+MLLQQSSWQNN RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++
Sbjct: 289 YVMDQKTMLLQQSSWQNNVRMSKLVEQIRGPLSTMRTLSKMLSSHTKRNQISHDIVEDLI 348
Query: 352 VQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSG 411
VQGD+++ TL+ELQDAV LTKANIVR+NEE LKK+N + H E+ RS N+ +++
Sbjct: 349 VQGDQIKDTLEELQDAVHLTKANIVRHNEEALKKINKT---HNETRRS----NYEQKDPI 401
Query: 412 NKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQ 471
+ + LSL + + D E+PMPPLALAPL+ + IRPC++S+VL D+ E VRPLA QQ
Sbjct: 402 DGSKIPSIRLSLGSGSDDSEIPMPPLALAPLQTHNIRPCDISNVLLDMVETVRPLALTQQ 461
Query: 472 RQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531
R VEL E S SL VAVEE ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDD
Sbjct: 462 RVVELGENSASLQVAVEESALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDD 521
Query: 532 DGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWK 591
DGPDM YMTQMHSLTPFG+EL SENMVEDNMTWNFVAGLTVARE+LESYGCV+RVISP
Sbjct: 522 DGPDMRYMTQMHSLTPFGAELLSENMVEDNMTWNFVAGLTVAREILESYGCVIRVISPRS 581
Query: 592 TDAALGSGGTRVELWLPS-PAPLSDLN 617
+DAALG+GGTRVELWLP PA +S+ N
Sbjct: 582 SDAALGAGGTRVELWLPPFPAAVSEAN 608
>gi|147860581|emb|CAN81865.1| hypothetical protein VITISV_010592 [Vitis vinifera]
Length = 608
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/645 (61%), Positives = 461/645 (71%), Gaps = 76/645 (11%)
Query: 7 TAVTPKTPLSKDHT------CCLLFCPNYHP--KFCA----SLNPKPLTTSPKSLS---- 50
+AVTP+T + + C LL CPN H FC + P LT S SL+
Sbjct: 4 SAVTPQTLVGNSGSNTTSSNCNLLVCPNNHKVHSFCRPNGFTQKPLILTNSSNSLANNTS 63
Query: 51 ------SNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETD 104
SN +LRH + T S++ E MV+SASAVASAIRR STSP++F+Q IE +
Sbjct: 64 QLQNPNSNSKTLRHDSLTDSDETE-----GAMVASASAVASAIRRASTSPVDFIQRIEKN 118
Query: 105 QKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV 164
QK LVLPSPDFQRLC+EQL LF RIVDP+A+LSVYVRPAGSYVMDRLELRRV YPGV
Sbjct: 119 QKN-GLVLPSPDFQRLCLEQLDLFHRIVDPNALLSVYVRPAGSYVMDRLELRRVTFYPGV 177
Query: 165 NATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLM 224
N DIV+LVGNF++P G R AEAALS+QQ +V+PE RAVVFPMVKHPFVVGFLVAELP++
Sbjct: 178 NGADIVILVGNFSIPTGFRVAEAALSNQQAEVIPECRAVVFPMVKHPFVVGFLVAELPMV 237
Query: 225 ELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINI 284
E + E S +E YA PP D I++ + E ++ YKF+ +QRLNAINI
Sbjct: 238 EDE----RERHPVTHCTSPDESYALPPQSDMXLGEIQALEEEGLKSYKFTEEQRLNAINI 293
Query: 285 CRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISY 344
RSLAMAYVMDQK+MLLQQSSWQNN RMS+LVEQIRGPLSSI+TLSKMLSLHMKRSE
Sbjct: 294 SRSLAMAYVMDQKAMLLQQSSWQNNVRMSDLVEQIRGPLSSIRTLSKMLSLHMKRSE--- 350
Query: 345 DIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNN 404
ANIVRYNEETLKKM S Y+H +S+ +QLS+N
Sbjct: 351 ----------------------------ANIVRYNEETLKKMYKSTYAHADSV-NQLSDN 381
Query: 405 FSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI------------RPCNV 452
F RE S +K + S +PLSL + A D++MP PPLALA + Q+GI RPCNV
Sbjct: 382 FWRETSSSKAEESGEPLSLTSAANDLDMPTPPLALARVSQHGISSLLLMSLFMSGRPCNV 441
Query: 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGK 512
D+L DL AV+PLAH QQR+VEL SQ+L VAVEEPALRQALSNLIEGAL+RT+VGGK
Sbjct: 442 YDILADLVGAVKPLAHKQQREVELIGRSQTLQVAVEEPALRQALSNLIEGALLRTRVGGK 501
Query: 513 VEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTV 572
VEI+S PAG A VVIDDDGPDMHYMTQMHSLTPFG++LFS+NM+EDNMTWNFVAGLTV
Sbjct: 502 VEILSTGTPAGGAFVVIDDDGPDMHYMTQMHSLTPFGADLFSDNMLEDNMTWNFVAGLTV 561
Query: 573 ARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 617
A E+LESYGCVV VISP TDAALG+GGTRV++ LPS SDLN
Sbjct: 562 ACEILESYGCVVHVISPRSTDAALGAGGTRVKILLPSLDAASDLN 606
>gi|224110864|ref|XP_002315662.1| predicted protein [Populus trichocarpa]
gi|222864702|gb|EEF01833.1| predicted protein [Populus trichocarpa]
Length = 473
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/478 (72%), Positives = 401/478 (83%), Gaps = 11/478 (2%)
Query: 150 MDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPM 207
MDRLELRRV SYPGVNA+ DIV+LV NFN+P GLRAAEAA SS+Q + V E RAVVFPM
Sbjct: 1 MDRLELRRVTSYPGVNASSSDIVILVANFNIPTGLRAAEAAFSSKQAECVAEHRAVVFPM 60
Query: 208 VKHPFVVGFLVAELPLMELQM-CGTEEPDAAIGFQSSEEVYAFP-PSFD-TESHAIESFD 264
VKHPFVVGFLVAELP+ME+ + C E D S EE YA P SF ++S +I++ +
Sbjct: 61 VKHPFVVGFLVAELPMMEMDISCANGESD----LISPEEAYASPSASFKKSKSWSIQTLN 116
Query: 265 HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLS 324
E +R++ F+A+QRLNAINI +LAMAYVMDQK++LLQQSSWQNN RM+ LVEQIRGPLS
Sbjct: 117 DEPLRMFNFTAEQRLNAINISHTLAMAYVMDQKALLLQQSSWQNNVRMTTLVEQIRGPLS 176
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384
SI+TLSKMLS+H KRSEI+YDIVEDI+VQGD +R LQELQDAV+LTKANIVRYNEETL
Sbjct: 177 SIRTLSKMLSIHTKRSEIAYDIVEDIIVQGDSVRDALQELQDAVYLTKANIVRYNEETLM 236
Query: 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ 444
K++NSAY+HPES+RSQL +F ++S +KLQ KP L+ +KD+EMPMPPLAL+PL+Q
Sbjct: 237 KIHNSAYAHPESMRSQLPEDFLNDSS-DKLQTPGKPRFLNPASKDMEMPMPPLALSPLQQ 295
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+GIRPCNVS+VL DL EA PLA+ QQR +EL ELSQSL VA+EEPALRQALSNLIEGAL
Sbjct: 296 HGIRPCNVSEVLSDLVEAAIPLANKQQRILELGELSQSLQVAIEEPALRQALSNLIEGAL 355
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564
+RT VGGKVEIVS APAG ALVVIDDDGPDMHYMTQM SL PFG+ELFSENMVEDNMTW
Sbjct: 356 LRTHVGGKVEIVSTGAPAGGALVVIDDDGPDMHYMTQMRSLIPFGAELFSENMVEDNMTW 415
Query: 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNE 622
NFVAGLTVARE+LE+YGCVVRVISP +DAALG+GGTR+ELWLPS A SD N ++E
Sbjct: 416 NFVAGLTVAREILENYGCVVRVISPRVSDAALGTGGTRIELWLPSFAS-SDQNDLAHE 472
>gi|356511068|ref|XP_003524253.1| PREDICTED: uncharacterized protein LOC100792515 [Glycine max]
Length = 612
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/552 (65%), Positives = 428/552 (77%), Gaps = 9/552 (1%)
Query: 77 VSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
V SA+AVA+AIR+ STSP++F Q +E ++++ LVLPS DF RLC+ QLHLFRRIV P+A
Sbjct: 63 VPSAAAVAAAIRKASTSPVQFTQQLE-NERQSGLVLPSTDFHRLCLHQLHLFRRIV-PEA 120
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPG-VNATDIVVLVGNFNMPAGLRAAEAALSSQQVQ 195
+LSVYVRPAGSYVMDRLELRRV YPG A IV+LVG+FN+PAGLRAAEA LS+ QV
Sbjct: 121 LLSVYVRPAGSYVMDRLELRRVALYPGDAEAEGIVILVGHFNIPAGLRAAEATLSNSQVN 180
Query: 196 VVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPP--SF 253
VVPE +AVV PMVKHPFVVGFLVAELPL+E + C + D S EE Y+FPP
Sbjct: 181 VVPECKAVVLPMVKHPFVVGFLVAELPLVEQEQCQKSQSDGPENLMSVEEPYSFPPFLDL 240
Query: 254 DTESHAIESFD--HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR 311
D +S I++ +E + ++ F+++QR NA+NI +SLAMAYVMDQK+MLLQQS+WQNN R
Sbjct: 241 DKKSREIQNLQVKNEAVGMHNFTSEQRSNAVNISQSLAMAYVMDQKAMLLQQSTWQNNVR 300
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
M NLVEQIRGPLSSIQTLSK+LS KR++IS+DIVED++VQGDRLR LQ+LQDAV+LT
Sbjct: 301 MGNLVEQIRGPLSSIQTLSKILSTQTKRTQISHDIVEDLLVQGDRLRDVLQQLQDAVYLT 360
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
K NIVRYNEE +KKMN S + ES RSQL ++ + S NK++ S + LSL +DIE
Sbjct: 361 KTNIVRYNEEAIKKMNGSTHILAESSRSQLLDSSPGDVSANKMKKSSESLSLSAAVQDIE 420
Query: 432 MPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQV-ELSELSQSLLVAVEEP 490
M P Q+GIR CNVS+VL DL ++VRPLA Q+R V S LL AVEEP
Sbjct: 421 M-PLPPLALAPLQHGIRSCNVSEVLADLVDSVRPLAQGQKRVVELSELSSSPLLAAVEEP 479
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
ALRQA SNLIEGAL+RT VGGKVEIVS AAPAG LV+IDDDGPDMHYMTQMHSLTP+G
Sbjct: 480 ALRQAFSNLIEGALLRTHVGGKVEIVSTAAPAGGTLVLIDDDGPDMHYMTQMHSLTPYGQ 539
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
EL S+NM+EDNMTWNFVAGLTVARE+LESYGCVVR++SP DA LG+GGTRVELWLPS
Sbjct: 540 ELLSDNMIEDNMTWNFVAGLTVAREILESYGCVVRIVSPRIKDAPLGAGGTRVELWLPSS 599
Query: 611 APLSDLNGKSNE 622
SDL+ + E
Sbjct: 600 IVQSDLSSHAQE 611
>gi|11072033|gb|AAG28912.1|AC008113_28 F12A21.3 [Arabidopsis thaliana]
Length = 610
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/608 (60%), Positives = 448/608 (73%), Gaps = 32/608 (5%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTE---EPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ + E +P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S ++ V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRVK-----LPSVKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQ++ S+Q ++ + S SY D++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQVQATHLSLQLAFVAGNVILPES-CSYRTDLDLIVQGDQIKDTLEELQDAVHL 367
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N + H E+ RS+ + ++ + Q S LSL + D
Sbjct: 368 TKANIVRHNEEALKKINKT---HNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 420
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP 490
EMPMPPLALAPL+ + IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEP
Sbjct: 421 EMPMPPLALAPLQMHSIRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEP 480
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDDDGPDM YMTQMHSLTPFG+
Sbjct: 481 ALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFGA 540
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS- 609
EL SENMVEDNMTWNFVAGLTVARE+LESYGCV+RVISP +DAALG+GGTRVELWLP+
Sbjct: 541 ELLSENMVEDNMTWNFVAGLTVAREILESYGCVIRVISPRSSDAALGAGGTRVELWLPAF 600
Query: 610 PAPLSDLN 617
PA +S+ N
Sbjct: 601 PAAVSEAN 608
>gi|109676316|gb|ABG37640.1| ATP-binding protein [Populus trichocarpa]
Length = 771
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/598 (61%), Positives = 433/598 (72%), Gaps = 75/598 (12%)
Query: 40 KPLTTSPKSLS---SNGT---SLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTS 93
KPL +P + S SNG + HVT +LS+DDE GS +VSSASAVASAIRR S+S
Sbjct: 233 KPLLRAPSASSLTASNGNLENPIHHVTHSLSDDDEEAGGGSGLVSSASAVASAIRRGSSS 292
Query: 94 PIEFLQTIETDQK----RCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYV 149
+EF+Q IE Q + LVLPSPDFQRLCV+QL LF RIVDPDA+LSVYVRPAGSYV
Sbjct: 293 SVEFVQRIEKGQNNNDNKTKLVLPSPDFQRLCVQQLDLFHRIVDPDAILSVYVRPAGSYV 352
Query: 150 MDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPM 207
MDRLELRRV SYPGVNA+ DIV+LV NFN+P GLRAAEAA SS+Q + V E RAVVFPM
Sbjct: 353 MDRLELRRVTSYPGVNASSSDIVILVANFNIPTGLRAAEAAFSSKQAECVAEHRAVVFPM 412
Query: 208 VKHPFVVGFLVAELPLMELQM-CGTEEPDAAIGFQSSEEVYAFP-PSFD-TESHAIESFD 264
VKHPFVVGFLVAELP+ME+ + C E D S EE YA P SF ++S +I++ +
Sbjct: 413 VKHPFVVGFLVAELPMMEMDISCANGESD----LISPEEAYASPSASFKKSKSWSIQTLN 468
Query: 265 HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLS 324
E +R++ F+A+QRLNAINI +LAMAYVMDQK++LLQQS
Sbjct: 469 DEPLRMFNFTAEQRLNAINISHTLAMAYVMDQKALLLQQS-------------------- 508
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384
S Q +M +L + +ANIVRYNEETL
Sbjct: 509 SWQNNVRMTTL----------------------------------VEQANIVRYNEETLM 534
Query: 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ 444
K++NSAY+HPES+RSQL +F +S +KLQ KP L+ +KD+EMPMPPLAL+PL+Q
Sbjct: 535 KIHNSAYAHPESMRSQLPEDF-LNDSSDKLQTPGKPRFLNPASKDMEMPMPPLALSPLQQ 593
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+GIRPCNVS+VL DL EA PLA+ QQR +EL ELSQSL VA+EEPALRQALSNLIEGAL
Sbjct: 594 HGIRPCNVSEVLSDLVEAAIPLANKQQRILELGELSQSLQVAIEEPALRQALSNLIEGAL 653
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564
+RT VGGKVEIVS APAG ALVVIDDDGPDMHYMTQM SL PFG+ELFSENMVEDNMTW
Sbjct: 654 LRTHVGGKVEIVSTGAPAGGALVVIDDDGPDMHYMTQMRSLIPFGAELFSENMVEDNMTW 713
Query: 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNE 622
NFVAGLTVARE+LE+YGCVVRVISP +DAALG+GGTR+ELWLPS A SD N ++E
Sbjct: 714 NFVAGLTVAREILENYGCVVRVISPRVSDAALGTGGTRIELWLPSFAS-SDQNDLAHE 770
>gi|226494793|ref|NP_001148109.1| LOC100281717 [Zea mays]
gi|195615846|gb|ACG29753.1| ATP binding protein [Zea mays]
gi|223942835|gb|ACN25501.1| unknown [Zea mays]
gi|414886403|tpg|DAA62417.1| TPA: ATP binding protein [Zea mays]
Length = 619
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 322/613 (52%), Positives = 400/613 (65%), Gaps = 50/613 (8%)
Query: 25 FCPNYHPKFCAS---LNPKPLT-TSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSS- 79
+CP + K S LNP P S ++ + LRHV D+E G V
Sbjct: 17 YCP--YSKLSVSIPTLNPLPRGPLSRRACACAHRYLRHVAS--PADEEEAGYGEGSVEGD 72
Query: 80 ------ASAVASAIRRTST-SPIEFL----QTIETDQKRCNLVLPSPDFQRLCVEQLHLF 128
A+AVA+ IRR S+ SP+ F + +E + L PSPDF+RLC EQL +F
Sbjct: 73 DLGPASAAAVAATIRRASSASPVRFRCVLGEAVEEPRGEEGLADPSPDFRRLCAEQLEIF 132
Query: 129 RRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVN---ATDIVVLVGNFNMPAGLRAA 185
R ++ DAVLSVYVRPAGSY+MD+LELRRV YPG+N D VLV NF++ +GLRAA
Sbjct: 133 RVLISRDAVLSVYVRPAGSYIMDQLELRRVALYPGINNLSEKDTPVLVCNFSISSGLRAA 192
Query: 186 EAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP------LMELQMCGTEEPDAAIG 239
EA L QQ++V+ E A+V PMVKHPFVVGFLV ELP M TE P
Sbjct: 193 EAFLVKQQMEVIREFGAIVLPMVKHPFVVGFLVVELPELHGGRAMNSYTADTELPPNTFM 252
Query: 240 FQSSEEVYAFPPSFDTESHA---IESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296
+SS D H I+++ + + + + +A+ I R+LAMAYVMDQ
Sbjct: 253 DKSS----------DVTPHTAWDIQTYGDQAKGYSQLVNEWKNSALMISRTLAMAYVMDQ 302
Query: 297 KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDR 356
K+ LLQQ+SWQNN RMS LVEQI GPLSSI+ L+KMLS H KRSEI YDI+ED++ QGD
Sbjct: 303 KAYLLQQTSWQNNVRMSGLVEQIWGPLSSIRALAKMLSFHTKRSEIPYDIIEDMLTQGDH 362
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
++ LQ++QDAV+LTKANIVR NEETLK + S HP S + GN Q
Sbjct: 363 MKDALQQIQDAVYLTKANIVRSNEETLKTIQRS--PHPSRTLSDY-----KSVPGNDSQK 415
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL 476
L+L + D+ MPMPPL LAPL+ RPC++ DVL DL PLA+ QQR ++L
Sbjct: 416 LDPVLALSSDGYDMVMPMPPLWLAPLQHQYDRPCDLCDVLKDLVAGALPLAYKQQRTLDL 475
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+E+S L VAVEE ALR+ALSNLIEGAL+RTQ GG V+I + APAG ALVVIDDDGPDM
Sbjct: 476 TEISHPLHVAVEESALRKALSNLIEGALLRTQHGGVVQICAVEAPAGGALVVIDDDGPDM 535
Query: 537 HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAAL 596
YMTQM SL PFGS+L ++ M+EDNMTWNF+AGLTVARELLE YGCV+RVISP +TDA +
Sbjct: 536 QYMTQMRSLAPFGSDL-ADGMLEDNMTWNFIAGLTVARELLEEYGCVLRVISPRRTDAVI 594
Query: 597 GSGGTRVELWLPS 609
G+GG+RVE+WLPS
Sbjct: 595 GTGGSRVEIWLPS 607
>gi|218186700|gb|EEC69127.1| hypothetical protein OsI_38049 [Oryza sativa Indica Group]
Length = 598
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/606 (50%), Positives = 391/606 (64%), Gaps = 62/606 (10%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR +V DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSADFRRLCGEQLEMFRVVVSRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQK+ LLQQ
Sbjct: 243 DKSSDITPYTKGEAWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQKAYLLQQ 302
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
+SWQNN RMS LVEQIRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 303 ASWQNNIRMSGLVEQIRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 362
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 363 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 414
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL 483
D+ D+ +PMPPL LAPL+ RPC++S VL DL A +PLA QQR ++++ +S L
Sbjct: 415 DSDNGDMVIPMPPLWLAPLQPQDTRPCDLSVVLEDLVGAAQPLAFRQQRTLDVTGISHPL 474
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
VAVEE ALRQALSNLIEGAL+RTQ+GG+V+I + APAG LVVIDDDGPDM YMTQMH
Sbjct: 475 QVAVEESALRQALSNLIEGALLRTQLGGRVQIYAGEAPAGGILVVIDDDGPDMQYMTQMH 534
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 603
L PFGS+L GLTVARE+LE+YGCV+RVISP + DA +G+GG+R+
Sbjct: 535 CLAPFGSDLAD--------------GLTVAREILENYGCVLRVISPRRPDAIIGTGGSRI 580
Query: 604 ELWLPS 609
E+WLP+
Sbjct: 581 EIWLPT 586
>gi|15146206|gb|AAK83586.1| At1g67840/F12A21_3 [Arabidopsis thaliana]
gi|21360445|gb|AAM47338.1| At1g67840/F12A21_3 [Arabidopsis thaliana]
Length = 457
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/413 (64%), Positives = 318/413 (76%), Gaps = 15/413 (3%)
Query: 150 MDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVK 209
MDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQV++V + RA VFPMVK
Sbjct: 1 MDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQVELVSKHRAAVFPMVK 60
Query: 210 HPFVVGFLVAELPLMELQMCGTE---EPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHE 266
HPFVVGFLVAELP+ + E +P F S EE YA P S +T+S ++
Sbjct: 61 HPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALPASANTKSPRVKLPS-- 118
Query: 267 RMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSI 326
V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN RMS LVEQIRGPLS++
Sbjct: 119 ---VKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNVRMSKLVEQIRGPLSTM 175
Query: 327 QTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386
+TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV LTKANI+R+NEE LKK+
Sbjct: 176 RTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHLTKANIMRHNEEALKKI 235
Query: 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNG 446
N + H E+ RS+ + ++ + Q S LSL + D EMPMPPLALAPL+ +
Sbjct: 236 NKT---HNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDSEMPMPPLALAPLQMHS 288
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEPALRQALSNLIEGAL+R
Sbjct: 289 IRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEPALRQALSNLIEGALLR 348
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE 559
T VGGKVEI+S APAG +LVVIDDDGPDM YMTQMHSLTPFG+EL SENMVE
Sbjct: 349 THVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFGAELLSENMVE 401
>gi|125579071|gb|EAZ20217.1| hypothetical protein OsJ_35821 [Oryza sativa Japonica Group]
Length = 576
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 291/606 (48%), Positives = 372/606 (61%), Gaps = 84/606 (13%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR ++ DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSTDFRRLCGEQLEMFRVVISRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQ
Sbjct: 243 DKSSDITPYTKGETWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQ------- 295
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
IRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 296 ---------------IRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 340
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 341 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 392
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL 483
D+ D+ +PMPPL LAPL+ RPC++S VL DL A +PLA QQR ++++ +S L
Sbjct: 393 DSDNGDMVIPMPPLWLAPLQPQDARPCDLSVVLEDLVGAAQPLAFRQQRTLDVTGISHPL 452
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
VAVEE ALRQALSNLIEGAL+RTQ+GG+V+I + APAG LVVIDDDGPDM YMTQMH
Sbjct: 453 QVAVEESALRQALSNLIEGALLRTQLGGRVQIYAGEAPAGGILVVIDDDGPDMQYMTQMH 512
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 603
L PFGS+L GLTVARE+LE+YGCV+RVISP + DA +G+GG+R+
Sbjct: 513 CLAPFGSDLAD--------------GLTVAREILENYGCVLRVISPRRPDAIIGTGGSRI 558
Query: 604 ELWLPS 609
E+WLP+
Sbjct: 559 EIWLPT 564
>gi|42572021|ref|NP_974101.1| chloroplast sensor kinase [Arabidopsis thaliana]
gi|332196583|gb|AEE34704.1| chloroplast sensor kinase [Arabidopsis thaliana]
Length = 445
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 254/438 (57%), Positives = 317/438 (72%), Gaps = 30/438 (6%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPL---MELQMCGTEEPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ E + E+P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S ++ V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRVKLPS-----VKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQIRGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHL 368
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N +H E+ RS+ + ++ + Q S LSL + D
Sbjct: 369 TKANIVRHNEEALKKINK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 421
Query: 431 EMPMPPLALAPLKQNGIR 448
EMPMPPLALAPL+ + IR
Sbjct: 422 EMPMPPLALAPLQMHSIR 439
>gi|217074886|gb|ACJ85803.1| unknown [Medicago truncatula]
Length = 458
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/407 (59%), Positives = 301/407 (73%), Gaps = 11/407 (2%)
Query: 64 SNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVE 123
S+DD + + +SS A+ASAIR+ TSP+EF Q +E R LVLPSPDF RLC++
Sbjct: 44 SDDDHRNNSTTLTLSSTRALASAIRKVPTSPVEFTQRLEK-HPRNGLVLPSPDFHRLCLQ 102
Query: 124 QLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATD----IVVLVGNFNMP 179
QL LFRRIV P++ LSVYVRPAGSYVMD+LELRRV YPG +A I +LV +FN+P
Sbjct: 103 QLQLFRRIV-PESFLSVYVRPAGSYVMDQLELRRVAVYPGGDAESEEEGIAILVSHFNVP 161
Query: 180 AGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIG 239
AGLR+AE ALS QV+VVPE +AVV PMVKHPFVVGFLVAELPL+EL+ C + D
Sbjct: 162 AGLRSAETALSELQVKVVPECKAVVLPMVKHPFVVGFLVAELPLVELETCVKGQSDGLNN 221
Query: 240 FQSSEEVYAFPPSFDTESHAIE----SFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295
S +E Y+ PP D + + E E + + F+ADQR NA++I +SLAMAYVMD
Sbjct: 222 HVSGKEDYSLPPFLDLDKKSWEIQTLRMKDEPVGMCNFTADQRSNAVDISQSLAMAYVMD 281
Query: 296 QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGD 355
QK+MLLQQS+WQNN RM+NLVEQIRGPLSSIQTL K+LS K+SEISYDIVEDI+ GD
Sbjct: 282 QKAMLLQQSTWQNNIRMNNLVEQIRGPLSSIQTLGKILSTQTKKSEISYDIVEDILALGD 341
Query: 356 RLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQ 415
RL LQ+LQDAV+LTK NI+RYNEE++KKMN S + ES++SQL + R+ S NK+
Sbjct: 342 RLSDVLQQLQDAVYLTKGNILRYNEESIKKMNGSNHIFSESVKSQLLDGSPRDGSVNKMH 401
Query: 416 NSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462
S +PLSL A+DIEMP+PPLALAPL+ +GIR CNVS+VL DL +
Sbjct: 402 KSSEPLSLGAAAQDIEMPLPPLALAPLR-HGIRSCNVSEVLADLVDT 447
>gi|77554696|gb|ABA97492.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862513|gb|ABG21976.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862514|gb|ABG21977.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862515|gb|ABG21978.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|215694022|dbj|BAG89221.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 442
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 211/445 (47%), Positives = 270/445 (60%), Gaps = 48/445 (10%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR ++ DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSTDFRRLCGEQLEMFRVVISRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQK+ LLQQ
Sbjct: 243 DKSSDITPYTKGETWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQKAYLLQQ 302
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
+SWQNN RMS LVEQIRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 303 ASWQNNIRMSGLVEQIRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 362
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 363 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 414
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIR 448
D+ D+ +PMPPL LAPL+ R
Sbjct: 415 DSDNGDMVIPMPPLWLAPLQPQDAR 439
>gi|294461995|gb|ADE76553.1| unknown [Picea sitchensis]
Length = 316
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 169/317 (53%), Positives = 230/317 (72%), Gaps = 9/317 (2%)
Query: 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQ 353
MDQ+++LLQQ+SWQ RMSNL+EQI GPLS+I+TLSKML H+KRSEI +D++E+I+VQ
Sbjct: 1 MDQRALLLQQTSWQKGVRMSNLMEQIHGPLSNIRTLSKMLIPHLKRSEIPHDLLENILVQ 60
Query: 354 GDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNK 413
G+ ++G LQELQDA + TKAN++ + EE L ++ S+P S+L + FS + K
Sbjct: 61 GEHMKGLLQELQDAFYYTKANLMHFREEDLNRIQR-VRSNP---FSRLGHAFSDYDYNAK 116
Query: 414 LQNSCKPLSLDTPAK-DIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQR 472
SL + + D+E+PMPPLALA L+Q+ +RPCNVS +L DL A LAH QQ+
Sbjct: 117 ----STAFSLGSTVREDLELPMPPLALAALQQSNVRPCNVSKLLSDLVNAGDALAHSQQQ 172
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
++L E + L A+EE ALRQALSNL++ AL+R GG V++ + AP G LVVIDD+
Sbjct: 173 TLQLIECTPLLQAAIEETALRQALSNLLDSALLRVPGGGWVKVEATEAPGGGVLVVIDDN 232
Query: 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 592
GPDM MTQ HSL PFGSEL E+ +DN+ WNFVAG+T+ARE+LE YG V+R++SP+
Sbjct: 233 GPDMSLMTQTHSLAPFGSELSLEDRAQDNVAWNFVAGITIAREILEHYGSVLRMLSPYLP 292
Query: 593 DAALGSGGTRVELWLPS 609
+A LG+GGT +E+WLP+
Sbjct: 293 NALLGAGGTHIEIWLPA 309
>gi|414886402|tpg|DAA62416.1| TPA: hypothetical protein ZEAMMB73_581571 [Zea mays]
Length = 450
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 210/452 (46%), Positives = 266/452 (58%), Gaps = 49/452 (10%)
Query: 25 FCPNYHPKFCAS---LNPKPLT-TSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSS- 79
+CP + K S LNP P S ++ + LRHV D+E G V
Sbjct: 17 YCP--YSKLSVSIPTLNPLPRGPLSRRACACAHRYLRHVAS--PADEEEAGYGEGSVEGD 72
Query: 80 ------ASAVASAIRRTST-SPIEFL----QTIETDQKRCNLVLPSPDFQRLCVEQLHLF 128
A+AVA+ IRR S+ SP+ F + +E + L PSPDF+RLC EQL +F
Sbjct: 73 DLGPASAAAVAATIRRASSASPVRFRCVLGEAVEEPRGEEGLADPSPDFRRLCAEQLEIF 132
Query: 129 RRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVN---ATDIVVLVGNFNMPAGLRAA 185
R ++ DAVLSVYVRPAGSY+MD+LELRRV YPG+N D VLV NF++ +GLRAA
Sbjct: 133 RVLISRDAVLSVYVRPAGSYIMDQLELRRVALYPGINNLSEKDTPVLVCNFSISSGLRAA 192
Query: 186 EAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP------LMELQMCGTEEPDAAIG 239
EA L QQ++V+ E A+V PMVKHPFVVGFLV ELP M TE P
Sbjct: 193 EAFLVKQQMEVIREFGAIVLPMVKHPFVVGFLVVELPELHGGRAMNSYTADTELPPNTFM 252
Query: 240 FQSSEEVYAFPPSFDTESHA---IESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296
+SS D H I+++ + + + + +A+ I R+LAMAYVMDQ
Sbjct: 253 DKSS----------DVTPHTAWDIQTYGDQAKGYSQLVNEWKNSALMISRTLAMAYVMDQ 302
Query: 297 KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDR 356
K+ LLQQ+SWQNN RMS LVEQI GPLSSI+ L+KMLS H KRSEI YDI+ED++ QGD
Sbjct: 303 KAYLLQQTSWQNNVRMSGLVEQIWGPLSSIRALAKMLSFHTKRSEIPYDIIEDMLTQGDH 362
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
++ LQ++QDAV+LTKANIVR NEETLK + S HP S + GN Q
Sbjct: 363 MKDALQQIQDAVYLTKANIVRSNEETLKTIQRSP--HPSRTLSDY-----KSVPGNDSQK 415
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448
L+L + D+ MPMPPL LAPL+ R
Sbjct: 416 LDPVLALSSDGYDMVMPMPPLWLAPLQHQYDR 447
>gi|168038002|ref|XP_001771491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677218|gb|EDQ63691.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 601
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 170/521 (32%), Positives = 268/521 (51%), Gaps = 64/521 (12%)
Query: 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLV 173
S +F LC EQL L + IV A +VY+RPA SY +LE + YP +V+
Sbjct: 120 SAEFLALCTEQLGLCQDIVGTPARFTVYIRPAESYSTGQLEFHCIAVYPSHQDELLVLKQ 179
Query: 174 GNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEE 233
+ +P L AEA L +Q+V V A++ PMVK F++GF+V E + + +
Sbjct: 180 SDTLVPISL--AEAKLINQEVVEVANGSAILLPMVKDLFLIGFIVVEG--VTTRSSTSSS 235
Query: 234 PDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAIN-ICRSLAMAY 292
P AA + + V+ PP ER V + Q+L+ ++ I +LA+A
Sbjct: 236 PKAA-KLKPIKPVW--PPK------------KERSPVAIPLSKQQLSELSKIALTLALAC 280
Query: 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMV 352
V+DQ+++LLQ+S+ + ++ L+EQ + PL +I+TLS+++ KR EIS D++EDI+V
Sbjct: 281 VVDQRALLLQKSNMKKVEQIDGLLEQAQAPLQAIRTLSQLMLPQFKRGEISRDLIEDILV 340
Query: 353 QGDRLRGTLQELQDAVFLTK-------------ANIVRYNEETLKKMNNSAYSHPESIRS 399
QG R++ LQ+LQ+ +TK N+ E L N +SH E+
Sbjct: 341 QGARMKDVLQQLQN---VTKSGPSIIQSSQDWEGNVEELPESKLASENRRLHSHGEN--- 394
Query: 400 QLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGD 458
++N R+ S P + D+E PMPPL LAP+ + I RPC+V+ VL
Sbjct: 395 --TDNIRRQGS--------LPAAHSDGRADVEAPMPPLTLAPVPEYDISRPCDVAKVLKQ 444
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L EA LA+ + + ++++ S L AV +L + S+++E AL GG V +
Sbjct: 445 LGEAANGLANKRGQNLQITSCS-PLHAAVNSASLHRVCSHILETALQHAPRGGYVRANAM 503
Query: 519 AAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 578
AP G L++I+D D+ + GS+L + ED + FV +++++
Sbjct: 504 RAPGGGVLIIIEDG--DLSTKGFNSARAWRGSDLEYALLGED---FRFV------QKIVK 552
Query: 579 SYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL-NG 618
G V+RV++P + D LG GGT VE+WLP+ D NG
Sbjct: 553 QEGGVLRVLAPVQKDLPLG-GGTYVEIWLPAVPNFEDFQNG 592
>gi|224110868|ref|XP_002315663.1| predicted protein [Populus trichocarpa]
gi|222864703|gb|EEF01834.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Query: 56 LRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQ----KRCNLV 111
+ HVT +LS+DDE GS +VSSASAVASAIRR S+S +EF+Q IE Q + LV
Sbjct: 21 IHHVTHSLSDDDEEAGGGSGLVSSASAVASAIRRGSSSSVEFVQRIEKGQNNNDNKTKLV 80
Query: 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLS 139
LPSPDFQRLCV+QL LF RIVDPDA+LS
Sbjct: 81 LPSPDFQRLCVQQLDLFHRIVDPDAILS 108
>gi|255574672|ref|XP_002528245.1| hypothetical protein RCOM_0590050 [Ricinus communis]
gi|223532331|gb|EEF34130.1| hypothetical protein RCOM_0590050 [Ricinus communis]
Length = 117
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 51 SNGTSLRHVTRTLSNDDEPPAAGSP-MVSSASAVASAIRRTSTSPIEFLQTIETDQKRCN 109
+N +SL H + + EP P MVS A AVASAIR+TS SPIEF+Q +E K
Sbjct: 31 NNTSSLLHRVTCMLPNGEPELTSPPEMVSFALAVASAIRKTSNSPIEFVQKMEKSDKS-K 89
Query: 110 LVLPSPDFQRLCVEQLHLFRRIVDPDA 136
LVL S DF +LC+EQL LFRRIVDPDA
Sbjct: 90 LVLASLDFHKLCIEQLDLFRRIVDPDA 116
>gi|434394076|ref|YP_007129023.1| histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428265917|gb|AFZ31863.1| histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 445
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 68/343 (19%)
Query: 283 NICRSLAMAYVMDQK-----SMLLQQSSWQNNAR--MSNLVEQIRGPLSSIQTLSKMLSL 335
++ ++LA+A V+D++ L QQ S R + NL+ Q+R PL++++T K+L
Sbjct: 148 HVAQTLALARVLDKRREWYEQQLTQQQSLMQTQRDLLDNLLHQLRNPLTALRTFGKLLIK 207
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + E+I+ + DR++ L++ + LT + P+
Sbjct: 208 RFVPGDTNRKVAENIVRESDRIQELLKQFDRIIELTPQ------------------TEPD 249
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+S S PL L+ + +E PL L P I PC+V D+
Sbjct: 250 PEKSL----------------SVTPLVLE---RTVEPVTKPLVLLPNVGENIEPCSVVDI 290
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L L + +A + V+ S++ L LV ALR+ SNL++ AL T GG++
Sbjct: 291 LEPLLASANAIAQERNLNVQ-SDIPADLPLVYANRVALREVFSNLLDNALKYTPAGGQIY 349
Query: 515 IVSAAAPAGDAL-VVIDDDGP-----DMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFV 567
I P D + I D GP D+ +M + H S++ +
Sbjct: 350 I--QVEPKEDFQGIAISDTGPGIPAQDLEHMFERHYRGVQAASQIPGTGL---------- 397
Query: 568 AGLTVARELLESYGCVVRVISPWK--TDAALGSGGTRVELWLP 608
GL +A++L+E ++V SP K T +A+ + GT +WLP
Sbjct: 398 -GLAIAKDLVEQMQGRIQVFSPAKHFTHSAVNNPGTTFVVWLP 439
>gi|297729087|ref|NP_001176907.1| Os12g0292900 [Oryza sativa Japonica Group]
gi|255670236|dbj|BAH95635.1| Os12g0292900, partial [Oryza sativa Japonica Group]
Length = 96
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 169 IVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP 222
+++LVGNF + AGLRAAEA L Q++++ E AVV PMVKHPFVVGFLVAELP
Sbjct: 39 VLILVGNFTISAGLRAAEAFLVKHQMEIITEFGAVVLPMVKHPFVVGFLVAELP 92
>gi|220905649|ref|YP_002480960.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7425]
gi|219862260|gb|ACL42599.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7425]
Length = 437
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 178/429 (41%), Gaps = 119/429 (27%)
Query: 197 VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256
+P+ +V P++ + V+GFLV G E+ P +D E
Sbjct: 95 LPQVEQIVLPLIHNNLVLGFLV----------VGREDR----------------PWWDWE 128
Query: 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR----- 311
+E H +LA+A ++DQ+ L+QS +Q +
Sbjct: 129 QQQLEQVAH---------------------TLAIACLLDQRHQWLEQSHYQQRSMQQQQY 167
Query: 312 --MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF 369
++NL+ QIR PLS+I+TL K+L + + ++ I+ + +RL+G LQ+ A+
Sbjct: 168 SLLANLLHQIRNPLSTIRTLGKLLLKRFLPEDPNRNLASSIVQESERLQGLLQQFDQAID 227
Query: 370 LTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKD 429
L +A + E+ +++S L TP +
Sbjct: 228 LGEAAL--------------------------------EDLALPIESS----RLTTPTQQ 251
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQ----RQVELSELSQSLLV 485
I +P P + ++PC+++++L L + +A Q Q+E L V
Sbjct: 252 ILLPAAPTT----GELQLQPCSLAELLTPLLLSATAIAQANQLDLQTQIETGPLPP---V 304
Query: 486 AVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA-GDALVVIDDDGP-----DMHYM 539
V+ AL++ALSNLI+ AL T GGKV I + PA + I D GP D+ ++
Sbjct: 305 TVDPQALKEALSNLIDNALKYTPAGGKVVIKLSRDPAQQQQCLTISDSGPGIPAQDLPHI 364
Query: 540 TQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG 599
+ H + E + + GL +AR L+E + VISP + + +
Sbjct: 365 FERH---------YRGVQAEGKLPGTGL-GLAIARHLIEQMQGRIEVISPARPHES--AA 412
Query: 600 GTRVELWLP 608
GT ++LP
Sbjct: 413 GTMFMVFLP 421
>gi|186684154|ref|YP_001867350.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
PCC 73102]
gi|186466606|gb|ACC82407.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
PCC 73102]
Length = 448
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 153/343 (44%), Gaps = 69/343 (20%)
Query: 283 NICRSLAMAYVMDQK-----SMLLQQSSWQNNAR--MSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A ++DQ+ L +Q Q R + NL+ Q R PL++++T K+L
Sbjct: 154 QIAQTLAIACILDQRRAWFEQQLREQQILQEKQRDLLDNLLHQFRNPLTALRTFGKLLLK 213
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ I+ + DRL+ LQ+ + LT+ ++ + H
Sbjct: 214 RLRPGDSNRDVANSIVRESDRLQELLQQFDQVIDLTETDLAPLH----------LPEHEV 263
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ + +Q KP PL L P + C+++D+
Sbjct: 264 FVEA-------------TIQKDAKP---------------PLLL-PGTGDKAVDCSLADI 294
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A Q+R+++L +E+ + S LV ALR+ L+N+I+ AL T GGK+
Sbjct: 295 LEPLLISAKAIA--QERKLKLITEIQENSPLVRANIKALREVLTNIIDNALKYTPTGGKI 352
Query: 514 EIVSAAAPAGDALVVIDDDGP-----DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
I + A + I D+GP D+ ++ + H + + + +
Sbjct: 353 LIQAGQEKANFQGIAISDNGPGIPPEDLEHLGERH---------YRGVQAQTEIPGTGL- 402
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLP 608
GL +A++L+E + V SP ++ L S GT +WLP
Sbjct: 403 GLAIAKQLIEQMQGKIEVFSP-AINSKLTSPNAPGTTFIIWLP 444
>gi|440681255|ref|YP_007156050.1| GAF sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428678374|gb|AFZ57140.1| GAF sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 450
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 152/345 (44%), Gaps = 76/345 (22%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +++A+A ++DQ+ L+Q Q + NL+ Q R PL++I+T K+L
Sbjct: 158 IAQTIAIACILDQRRAWLEQQLHQQQIFQEAQRDLLDNLLHQFRNPLTAIRTFGKLLFKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ + + D+ I+ + DRL+ LQ+ + L++A++
Sbjct: 218 LRPGDTNRDVATSIVRESDRLQELLQQFDQVIDLSEADL--------------------- 256
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSL---DTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453
KP+SL ++ + PL L P + C+++
Sbjct: 257 ----------------------KPISLRESQVVEASVQKDVKPLLLLPGTGEKVIDCSLT 294
Query: 454 DVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGG 511
D+L L + + +A Q+R ++L +++ ++L LV AL++ LSN+I+ AL T GG
Sbjct: 295 DLLIPLLISTQAIA--QERNLDLIADIPENLPLVRANIKALQEVLSNIIDNALKYTPAGG 352
Query: 512 KVEIVSAAAPAGDALVVIDDDGP-----DMHYMTQMHSL-TPFGSELFSENMVEDNMTWN 565
K+ I + + I D+GP D+ ++ + H +E+ +
Sbjct: 353 KIWIQAGQKRTNFQGIAISDNGPGIPPEDLEHLGERHYRGVQAQTEIPGTGL-------- 404
Query: 566 FVAGLTVARELLESYGCVVRVISPW--KTDAALGSGGTRVELWLP 608
G+ +A++L+E + V SP +L + GT+ +WLP
Sbjct: 405 ---GIAIAKQLIEQMQGEIEVFSPAFNLNMNSLANPGTKFIIWLP 446
>gi|17231474|ref|NP_488022.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
gi|17133117|dbj|BAB75681.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
Length = 454
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 149/346 (43%), Gaps = 75/346 (21%)
Query: 283 NICRSLAMAYVMDQK-------SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
+ ++LA+A ++DQ+ Q Q + NL+ Q R PL++++T K+L
Sbjct: 158 KVGQTLAIACILDQRRAWLQHQLHQQQILQEQQQDLLDNLLHQFRNPLTALRTFGKLLLK 217
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR--------YNEETLKKMN 387
++ + + D+ E+I+ + DRL+ LQ+ + + T+A++ R + E T++K
Sbjct: 218 RLRPGDPNRDVGENIVRESDRLKELLQKFEQVIDWTEADLSRLVLPEKEGFVEATVQKEA 277
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
A P +G +L +
Sbjct: 278 KPALLLP--------------GTGEQLTD------------------------------- 292
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALM 505
C V D+L L + + +A Q R ++L +++SQ L LV V AL++ LSN+I+ AL
Sbjct: 293 --CAVVDLLTPLLMSAKAIA--QDRHIKLKADISQDLPLVRVNIKALQEVLSNIIDNALK 348
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
T GGK+ I + + I D+GP + +H G + + +
Sbjct: 349 YTPQGGKIYIQAGQEKLNFQGIAISDNGPGIPQEDLVH----LGERHYRGVQAQTEIPGT 404
Query: 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLP 608
+ GL +A++L+E + + SP ++ L S GT +WLP
Sbjct: 405 GL-GLAIAKQLIEQMQGEIEIFSP-AINSKLTSPNTPGTTFIIWLP 448
>gi|75907940|ref|YP_322236.1| histidine kinase [Anabaena variabilis ATCC 29413]
gi|75701665|gb|ABA21341.1| histidine kinase [Anabaena variabilis ATCC 29413]
Length = 454
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 148/346 (42%), Gaps = 75/346 (21%)
Query: 283 NICRSLAMAYVMDQK-------SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
+ ++LA+A ++DQ+ Q Q + NL+ Q R PL++++T K+L
Sbjct: 158 KVGQTLAIACILDQRRAWLQHQLHQQQILQEQQQDLLDNLLHQFRNPLTALRTFGKLLLK 217
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR--------YNEETLKKMN 387
++ + + D+ E+I+ + DRL+ LQ+ + + T+A++ R + E T++K
Sbjct: 218 RLRPGDPNRDVGENIVRESDRLKELLQKFEQVIDWTEADLSRLVLPEKEGFVEATVQKEA 277
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
A P +G +L +
Sbjct: 278 KPALLLP--------------GTGEQLTD------------------------------- 292
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALM 505
C V D+L L + + +A Q R ++L +++SQ L LV V AL++ L+N+I+ AL
Sbjct: 293 --CAVIDLLTPLLMSAKAIA--QDRHIKLKADISQDLPLVRVNIKALQEVLTNIIDNALK 348
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
T GGK+ I + + I D+GP + L G + + +
Sbjct: 349 YTPQGGKIYIQAGQEKLNFQGIAISDNGPGIP----QEDLAHLGERHYRGVQAQTEIPGT 404
Query: 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLP 608
+ GL +A++L+E + + SP ++ L S GT +WLP
Sbjct: 405 GL-GLAIAKQLIEQMQGEIEIFSP-AINSKLTSPNTPGTTFIIWLP 448
>gi|427734983|ref|YP_007054527.1| histidine kinase [Rivularia sp. PCC 7116]
gi|427370024|gb|AFY53980.1| histidine kinase [Rivularia sp. PCC 7116]
Length = 437
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 146/330 (44%), Gaps = 57/330 (17%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQK-----SMLLQQSSWQNNAR--MSNLVEQIRG 321
R +K S +R N+ +SLA+A +MD++ S L Q Q M NL+ Q R
Sbjct: 131 RAWKES--ERTQIENVAQSLAIACIMDRRRAWLASQLHQHQIMQEKQLDLMDNLLHQFRN 188
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++++T K+L+ + + + ++ I+ + DRL+ LQ+ +A+ LT
Sbjct: 189 PLTALRTFGKLLTKRLLPKDANSEVALSIVRESDRLKELLQKFDEAIDLT---------- 238
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
PE + L P + +E P L L
Sbjct: 239 ------------PEDL----------------LPAKLLPKNQVEVEATVEENKPLLLLNG 270
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
+Q I ++++VL L + + +A Q+R ++L +E+ ++ LV ALR+ LSN+
Sbjct: 271 AEQE-IFEFDLNEVLQPLLISAKAIA--QERSLKLITEIDNTVFLVRGNSQALREVLSNI 327
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE 559
++ AL T GGK+ I S A + + I D+GP + L G + E
Sbjct: 328 VDNALKYTPAGGKILIESIKDKANFSGIAISDNGPGIPK----KDLDHLGERGYRGVQAE 383
Query: 560 DNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ + + GL +A++L+E + V SP
Sbjct: 384 TEIPGSGL-GLAIAKQLIEQMQGEMEVFSP 412
>gi|332705417|ref|ZP_08425495.1| signal transduction histidine kinase [Moorea producens 3L]
gi|332355777|gb|EGJ35239.1| signal transduction histidine kinase [Moorea producens 3L]
Length = 473
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 136/325 (41%), Gaps = 49/325 (15%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
+I R+LA+AYV++Q+ +Q Q+ + +L+ Q R PL +++T K+L
Sbjct: 149 SIARTLAIAYVIEQRQGWFEQQLTQHRRLQAKQRDMLDDLLHQFRNPLMALRTFGKLLLK 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + +Y + I+ + DRL+ LQ+ + + + TL A S PE
Sbjct: 209 RLVPGDKNYPVASSIIRESDRLQELLQQFDACLDMNQTGTASL---TLPVATAEACSSPE 265
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
S L + +S +P S TP E P+ PL+ ++ DV
Sbjct: 266 S--DDLGEIYPTSHS--------EPHS--TPG---EFPLLTDKTLPLQLFAVK-----DV 305
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L L + + ++ S LV ALR+ LSNLI+ AL T GGK++I
Sbjct: 306 LEPLLISADAITQEANLELHCSIAPDLPLVKGNPKALREVLSNLIDNALKYTPAGGKIDI 365
Query: 516 ---VSAAAPAGDAL-VVIDDDGP-----DMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
V GDA+ + I D GP D+ ++ + H + +
Sbjct: 366 QVGVGQWLDHGDAIAIAISDTGPGIAPEDLDHLFERH----------YRGVQANGPIPGT 415
Query: 567 VAGLTVARELLESYGCVVRVISPWK 591
GL +A+EL+ + V SP K
Sbjct: 416 GLGLAIAKELMAYMQGDIEVFSPAK 440
>gi|414077476|ref|YP_006996794.1| two-component sensor histidine kinase [Anabaena sp. 90]
gi|413970892|gb|AFW94981.1| two-component sensor histidine kinase [Anabaena sp. 90]
Length = 451
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 122/274 (44%), Gaps = 55/274 (20%)
Query: 284 ICRSLAMAYVMDQK-------SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++DQ+ Q + + NL+ Q+R PL++I+T K+L
Sbjct: 159 IAKTLAIACIIDQRRAWLQHQLQQEQILQERQRDLLDNLLHQLRNPLTAIRTFGKLLFKR 218
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
M+ + + ++ I+ + DRL+ LQ+ + L A++ + PES
Sbjct: 219 MRPVDPNREVATSIVRESDRLQELLQQFDQVIDLNTADL-------------APLPLPES 265
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+ ++ N ++ P+ P L P + C ++D+L
Sbjct: 266 -KVVINEN-------------------------VQKPVKPALLLPGTGEQLTDCCLADLL 299
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + ++ Q+R ++L +E+S L LV V E AL + LSN+I+ AL T GGK+
Sbjct: 300 APLLISAQAIS--QERNLQLITEISHYLPLVKVNEKALTEVLSNIIDNALKYTPPGGKIL 357
Query: 515 IVSAAAPAGDALVVIDDDGP-----DMHYMTQMH 543
+ + I D GP D+ ++ + H
Sbjct: 358 VQCGQQKGNLQGIAISDTGPGIPPEDLEHLGERH 391
>gi|428226317|ref|YP_007110414.1| histidine kinase [Geitlerinema sp. PCC 7407]
gi|427986218|gb|AFY67362.1| histidine kinase [Geitlerinema sp. PCC 7407]
Length = 474
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 152/371 (40%), Gaps = 86/371 (23%)
Query: 284 ICRSLAMAYVMDQKSMLLQQ-------SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
+ ++LA V+D++S Q Q + + LV Q R PL++++T K+L
Sbjct: 147 VAKTLAAGCVLDRRSHWFQSHYHQQQDVQRQQHETLDTLVHQFRNPLTALRTFGKLLLRR 206
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + D+ I+ + DRL+ L ++ +TL+ +A P +
Sbjct: 207 LGMGDPNRDVASSIVRESDRLQELLVQIG---------------QTLQPTPGTAL--PRT 249
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEM---PMPPL--ALAPLKQNGIRPCN 451
I S P +LD A+ E P P L + L +RPC
Sbjct: 250 IAP-----------------SPDPEALDVVAQRTEQQEAPQPQLLPSTGWLSAADVRPCE 292
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQV 509
+ +VL L + + +A Q+RQ+ L + ++ V ALR+ LSNL++ AL T
Sbjct: 293 ILEVLEPLLMSTQAIA--QERQITLHIVLPDVIQPVLANPQALREVLSNLLDNALKYTPP 350
Query: 510 GGKVEIVSAAAPAGDA----LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
GG+V++ A + + + I D GP + Q LF + +
Sbjct: 351 GGRVQLEVGATRSTETGLQQAIAITDTGPGIPLADQ--------GRLFERHYRGVQAQGS 402
Query: 566 FVA---GLTVARELLESYGCVVRVISP-----WKTDA---------------ALGSGGTR 602
GL + +EL+E V + SP W T+A A+ S GT
Sbjct: 403 IPGSGLGLAIVKELIEQMQGSVELHSPAIASLWLTEADASELPDANGAEGDPAIASPGTT 462
Query: 603 VELWLP-SPAP 612
+++WLP +P P
Sbjct: 463 LQIWLPIAPLP 473
>gi|427729398|ref|YP_007075635.1| histidine kinase [Nostoc sp. PCC 7524]
gi|427365317|gb|AFY48038.1| histidine kinase [Nostoc sp. PCC 7524]
Length = 443
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 149/340 (43%), Gaps = 63/340 (18%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSL 335
NI ++LA+A ++DQ+ LQ Q + NL+ Q R PL++++T K+L
Sbjct: 150 NIGQTLAIACILDQRRAWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTALRTFGKLLLK 209
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ E+I+ + DRL+ LQ+ + + + V + E L N +
Sbjct: 210 RLRPGDPNRDVGENIVRESDRLKELLQKFDEVI-----DWVDADSELLSLPKNEIFVE-- 262
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSL--DTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453
+Q KP L T ++I+ C+++
Sbjct: 263 ----------------ATVQREAKPALLLPGTGEQEID------------------CSLA 288
Query: 454 DVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGG 511
D+L L + + +A Q++ +EL +++ ++L LV AL++ LSN+++ A+ T GG
Sbjct: 289 DLLAPLLVSAQAIA--QEKNLELIADIPRNLPLVKANIKALQEVLSNIMDNAIKYTPPGG 346
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+ I A + I D GP + H G + + + + G+
Sbjct: 347 NIYIQLGREKANLQGIAISDTGPGIPPEDLAH----LGERHYRGVQAQTEIPGTGL-GIA 401
Query: 572 VARELLESYGCVVRVISP---WKTDAALGSGGTRVELWLP 608
+A++L+E + V SP W A+ + GT V +WLP
Sbjct: 402 IAKQLIEQMQGEIEVFSPAINWAI-ASPDAPGTTVIIWLP 440
>gi|428318024|ref|YP_007115906.1| histidine kinase [Oscillatoria nigro-viridis PCC 7112]
gi|428241704|gb|AFZ07490.1| histidine kinase [Oscillatoria nigro-viridis PCC 7112]
Length = 463
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 153/358 (42%), Gaps = 85/358 (23%)
Query: 283 NICRSLAMAYVMDQKSMLLQQ---SSWQNNAR----MSNLVEQIRGPLSSIQTLSKMLSL 335
I R+LA+A ++DQ+S +QQ +S Q A+ M NL+ Q + PL++++T K+L+
Sbjct: 156 QIARTLALACILDQRSQWMQQELGTSRQIQAQVYDTMHNLLHQFKSPLTALRTFGKLLAR 215
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + ++ I+ + DRL+ L + V +A++ + + K M S E
Sbjct: 216 RLVPEDKNRNVAFSIVRESDRLQELLGQFDRTVDTGEAHLKLRSGTSEKAM-----SKVE 270
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SIR PLSL +PA ++E C V++V
Sbjct: 271 SIRH-------------------SPLSL-SPAANLE----------------ESCFVAEV 294
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + +A +R ++L ++ L V+ + ALR+ LSNLI+ AL T G ++
Sbjct: 295 LKPLLISAEAIA--SERNLKLVADIEANLPPVSANDRALREVLSNLIDNALKYTPAGRQI 352
Query: 514 EI-VSAAAPAGD---------ALVVIDDDGP-----DMHYMTQMHSLTPFGSELFSENMV 558
I V A GD V + D G D+ ++ + H + E +
Sbjct: 353 YIKVRYKAADGDRAGYSQLPAIAVAVSDTGSGIPPQDLEHLFERH----YRGEKAQTEIP 408
Query: 559 EDNMTWNFVAGLTVARELLESYGCVVRVISP----W----KTDAALGSGGTRVELWLP 608
+ GL +AR+L+ + V SP W +T GT +WLP
Sbjct: 409 GTGL------GLAIARDLVRQMQGEIEVFSPVNPEWLPSSETHLYPTDRGTTFVVWLP 460
>gi|428298468|ref|YP_007136774.1| histidine kinase [Calothrix sp. PCC 6303]
gi|428235012|gb|AFZ00802.1| histidine kinase [Calothrix sp. PCC 6303]
Length = 456
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 56/315 (17%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ LQQ Q + NL+ Q R PL++++T K+L
Sbjct: 164 IAQTLAIACILDRQRTWLQQQLHQQQIFQEKQLDLLDNLLHQFRNPLTALRTFGKLLLKR 223
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ E + ++ I+ + DRL+ LQ+ +A+ LT +++
Sbjct: 224 LRAGEANREVATSIVRESDRLQELLQKFDEAIDLTGEDLIPL------------------ 265
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+RSQ + ++ S +PL P L P C++ +VL
Sbjct: 266 LRSQ---------TEVVVEASVQPLK-------------PKLLLPGSDEIETDCDLMEVL 303
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L ++ +A Q+R +EL +E L LV + +LR+ +SN+++ +L T GGKV
Sbjct: 304 QPLLDSAYAIA--QERNLELITEFPLKLPLVRINHKSLREVISNILDNSLKYTPNGGKVL 361
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAR 574
+ + G + I D+GP + H G + + + GL +A+
Sbjct: 362 VQTGLEKPGFQGIAISDNGPGIPQQDIKH----LGERHYRGVQAATQIPGTGL-GLAIAK 416
Query: 575 ELLESYGCVVRVISP 589
+LLE + V SP
Sbjct: 417 QLLEQMQGNLEVFSP 431
>gi|282898289|ref|ZP_06306280.1| Histidine Kinase [Raphidiopsis brookii D9]
gi|281196820|gb|EFA71725.1| Histidine Kinase [Raphidiopsis brookii D9]
Length = 469
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 140/342 (40%), Gaps = 58/342 (16%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ + LQ Q A + +L+ Q R PL++I+T K+L
Sbjct: 168 IATTLAIACILDQRQVWLQHQLQQEKALQKEQGDLLDSLLHQFRNPLTAIRTFGKLLLKR 227
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ ++ +I+ Q DRL+ LQ+ D V +K
Sbjct: 228 LRSNDTDREVAINIINQSDRLQELLQKF-DQVLDSK------------------------ 262
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLD-TPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SR+ + + S L+++ +P K + +P P C + D+
Sbjct: 263 ---------SRDTTAIPILGSA--LTVEASPDKTAPLLLPGTGEEPTS------CYLKDI 305
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L + + + LA + Q+ + + V ALR+ SN+I+ AL T GGK+ I
Sbjct: 306 LVPILASAQVLAQEKTIQLLIDIPNHLPPVKANTKALREVFSNIIDNALKYTPAGGKISI 365
Query: 516 VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 575
S + I D GP + L G + ++ + G+ +A++
Sbjct: 366 QSLQKNTEIQGIAISDTGPGI----PKEDLERLGERHYRGVQANSSIPGTGL-GMAIAKQ 420
Query: 576 LLESYGCVVRVISPWKT--DAALGSGGTRVELWLPS-PAPLS 614
L+ + V SP A+ GT +WLP P PL+
Sbjct: 421 LIAQMQGEIEVFSPAVEFDRASFSLPGTSFIVWLPQLPYPLN 462
>gi|218247819|ref|YP_002373190.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8801]
gi|218168297|gb|ACK67034.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8801]
Length = 434
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 138/338 (40%), Gaps = 78/338 (23%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ Q+ Q R+ +L Q+R PL++++ SK+L
Sbjct: 151 IAKTLAIAGLLDRRQNWYQEQLRQQQGLKVQERDRLDDLFHQLRNPLTALRIFSKLLLKR 210
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+K E S IV+ I+ + D L QEL A F + V N K + S S P +
Sbjct: 211 LKSDEKSRSIVDSIIRESDHL----QELIQA-FEGDQDTVTLN----AKASLSCASLPSA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
LS P N+ DVL
Sbjct: 262 TSRTLS----------------------------------------------PVNIKDVL 275
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L +++ +A Q++Q++L +++ + L V ALR+ L+NLI+ A+ T GG+V
Sbjct: 276 DPLLISIKSIA--QEKQIDLKADIPRDLPSVYANSQALREVLNNLIDNAIKYTPKGGQVR 333
Query: 515 I----VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
+ +S ++I+D G + Q H + +E + GL
Sbjct: 334 VELGLISIIDQKTYQGILIEDTGYGIPLEDQAHIFDRHYRGIQAEGDISGTGL-----GL 388
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+ ++L+ ++ V SP A GTR +WLP
Sbjct: 389 AIVKDLVNQMEGIIEVFSPIN---AKQKKGTRFMVWLP 423
>gi|257060861|ref|YP_003138749.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8802]
gi|256591027|gb|ACV01914.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8802]
Length = 434
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 138/338 (40%), Gaps = 78/338 (23%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ Q+ Q R+ +L Q+R PL++++ SK+L
Sbjct: 151 IAKTLAIAGLLDRRQNWYQEQLRQQQGLKVQERDRLDDLFHQLRNPLTALRIFSKLLLKR 210
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+K E S IV+ I+ + D L QEL A F + V N K + S S P +
Sbjct: 211 LKSDEKSRSIVDSIIRESDHL----QELIQA-FEGDQDTVTLN----AKASLSCASLPSA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
LS P N+ DVL
Sbjct: 262 TSRTLS----------------------------------------------PVNIKDVL 275
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L +++ +A Q++Q++L +++ + L V ALR+ L+NLI+ A+ T GG+V
Sbjct: 276 DPLLISIKSIA--QEKQIDLKADIPRDLPSVYANSQALREVLNNLIDNAIKYTPKGGQVR 333
Query: 515 I----VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
+ +S ++I+D G + Q H + +E + GL
Sbjct: 334 VELGLISIIDQKTYQGILIEDTGYGIPLEDQAHIFDRHYRGIQAEGDISGTGL-----GL 388
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+ ++L+ ++ V SP A GTR +WLP
Sbjct: 389 AIVKDLVNQMEGIIEVFSPIN---AKQKKGTRFMVWLP 423
>gi|300863788|ref|ZP_07108715.1| histidine kinase [Oscillatoria sp. PCC 6506]
gi|300338216|emb|CBN53861.1| histidine kinase [Oscillatoria sp. PCC 6506]
Length = 478
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 47/242 (19%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I SLA+A V+DQ+S +QQ + Q M NL+ Q + PL++++T K+L
Sbjct: 157 IAHSLAIACVLDQRSQWMQQQAGQQQQLQLQQYDTMHNLLHQFKSPLTALRTFGKLLMKR 216
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + ++ I+ + DRL LQ++ V + + N++
Sbjct: 217 LLVEDKNREVAVSIVRESDRLSELLQQIDRTVDIGEKNLI-------------------- 256
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEM-PMPPLALAPLKQNGIRPCNVSDV 455
+ SQL E K+QNS + +E+ P + L P N PC+V++V
Sbjct: 257 LPSQLEPTSKSE----KIQNS----------RLVEISEFPAVELLP-AANFSEPCSVAEV 301
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L E+ R +A +R ++L +E+ +L LV ALR+ LSNL++ AL TQ G ++
Sbjct: 302 LNPLLESARAIA--DERHLKLQAEIPNNLPLVQANAKALREVLSNLLDNALKYTQAGRQI 359
Query: 514 EI 515
I
Sbjct: 360 YI 361
>gi|255087546|ref|XP_002505696.1| predicted protein [Micromonas sp. RCC299]
gi|226520966|gb|ACO66954.1| predicted protein [Micromonas sp. RCC299]
Length = 695
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 121/316 (38%), Gaps = 66/316 (20%)
Query: 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYP-------------- 162
FQ C Q+ L R + A +Y+R A S D L+L V S+P
Sbjct: 89 FQEFCDAQVELVGRALGRGARCMLYLRSA-SADGDALQLAEVASFPRSSRSSSGNDGAGP 147
Query: 163 ----------------GVNATDIVVLVGN------------------------FNMPAGL 182
G AT V L GN + +
Sbjct: 148 AGAWEVGGALRESDDFGAAATSFVELAGNEASTSGRGSSGSPRGSGTGGPGQAITLSGSI 207
Query: 183 -------RAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQ-MCGTEEP 234
AAEA L Q+V +P A+V P+ + +VG LV E+P + E
Sbjct: 208 DDSDGQSTAAEALLVKQRVFALPSANALVVPLSRDDTLVGLLVGEMPEGRVSSRVRKERV 267
Query: 235 DAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINIC-RSLAMAYV 293
AA G EV + S T + + +F D+R A+ +S+ A+
Sbjct: 268 KAASGGDVEVEVLS-AASAHTGEGEEKEKEAAADTAAQF-GDRRQAALTAAAKSIVAAWT 325
Query: 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQ 353
M +++ ++ Q + R++ + PL+ ++TL MLS H+K S D+ + I+ Q
Sbjct: 326 MHRRANYATAAAVQQDRRVAGFAYAAKEPLTVLRTLGGMLSSHLKPDTPSRDMADAIVAQ 385
Query: 354 GDRLRGTLQELQDAVF 369
GD L + L+ A++
Sbjct: 386 GDVLVSLSEALESALY 401
>gi|434405618|ref|YP_007148503.1| histidine kinase [Cylindrospermum stagnale PCC 7417]
gi|428259873|gb|AFZ25823.1| histidine kinase [Cylindrospermum stagnale PCC 7417]
Length = 459
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 153/373 (41%), Gaps = 85/373 (22%)
Query: 264 DHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLV 316
DHE+ + + I +++A+A ++DQ+ LQQ + + NL+
Sbjct: 149 DHEQGEIQR-----------IAQTMAIACILDQRRAWLQQQLHQQQIFQEKQRDLLDNLL 197
Query: 317 EQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIV 376
Q R PL++++T K+L ++ ++ + D+ I+ + DRL+ L + + + LT+A++
Sbjct: 198 HQFRNPLTAVRTFGKLLLKRLRPADPNRDVGTSIVRESDRLKELLIQFDEVIDLTEADL- 256
Query: 377 RYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP 436
L+K+ PES + + +F Q KP L
Sbjct: 257 -----ALRKL-------PES-KVFVEASF---------QKDAKPALL------------- 281
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L G + + V A Q+R ++L + L V V ALR+
Sbjct: 282 -----LPGTGEKTADCLLADLLDPLLVSAKAIAQERNLQLMANIPADLPPVQVNIKALRE 336
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP-----DMHYMTQMHSLTPFG 549
LSN+I+ AL T GGK+ I A + I D GP D+ ++ + H
Sbjct: 337 VLSNIIDNALKYTNSGGKILIQVGQKRANFQGIAISDTGPGIPPEDLEHLGERH------ 390
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELW 606
+ G+ +A++LLE + V SP D+A+ S GT V +W
Sbjct: 391 ----YRGVQAQTAIPGTGLGMAIAKQLLEQMQGEIEVFSP-AIDSAITSPHTPGTTVIIW 445
Query: 607 LP-----SPAPLS 614
LP SP P S
Sbjct: 446 LPEVGAGSPRPSS 458
>gi|282901470|ref|ZP_06309395.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
gi|281193749|gb|EFA68721.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
Length = 466
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 135/334 (40%), Gaps = 55/334 (16%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ + LQ Q A + NL+ Q R PL++I+T K+L
Sbjct: 168 IATTLAIACILDQRQVWLQHQLQQEKALQKEQGDLLDNLLHQFRNPLTAIRTFGKLLLKR 227
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ + ++ +I+ Q DRL+ LQ ++ L N + P
Sbjct: 228 LRSNDTNREVAINIINQSDRLQELLQNF---------------DQVLDSKNRDTTAIPT- 271
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
L + E S P K + +P P C++ D+L
Sbjct: 272 ----LGLALTVEAS---------------PQKTAPLLLPGTGEEPTS------CHLKDIL 306
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
L + + LA + Q+ + + V AL + SN+I+ A+ T VGGK+ I
Sbjct: 307 LPLLASAQVLAQEKTIQLLIDIPNHLPPVKANIKALTEVFSNIIDNAIKYTPVGGKISIQ 366
Query: 517 SAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 576
S + I D GP + L G + ++ + G+ +A++L
Sbjct: 367 SLQKNTDFQGIAISDTGPGIP----KEDLDRLGERNYRGVQANTDIPGTGL-GMAIAKQL 421
Query: 577 LESYGCVVRVISPW-KTDAALGS-GGTRVELWLP 608
+ + V SP + D+A S GT +WLP
Sbjct: 422 IAQMQGEIEVFSPAVEFDSASSSLPGTSFIVWLP 455
>gi|354568914|ref|ZP_08988075.1| histidine kinase [Fischerella sp. JSC-11]
gi|353539426|gb|EHC08913.1| histidine kinase [Fischerella sp. JSC-11]
Length = 438
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 138/345 (40%), Gaps = 52/345 (15%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQ-------QSSWQNNARMSNLVEQIRGPLSS 325
++ +R +I R+LA+A ++DQ+ L+ + + NL+ Q R PL++
Sbjct: 133 WNEQERSRIESIARTLAIACILDQRRTWLEVQLHQQQILQEKQQDLLDNLLHQFRNPLTA 192
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
++T K+L ++ + + ++ E I+ + DRL+ L++ + + L N+
Sbjct: 193 LRTFGKLLLKRLRPGDPNREVAESIVRESDRLQELLKKFDEVIDLGVENL---------- 242
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
+ PE + +E+ PPL L P
Sbjct: 243 ---APLKLPEQEEIFVEATVEKEHK------------------------PPL-LLPGTGE 274
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
C ++D+L L + + +A + Q+ + S LV AL + SN+I+ AL
Sbjct: 275 KEADCYITDILQPLLISAQAIAQERNLQLTANIPSDLPLVRANRKALTEVFSNIIDNALK 334
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
T GGKV I + V I D GP + H G + + +
Sbjct: 335 YTPAGGKVLIEAGQQKDNLQGVAITDTGPGIPPEDLAH----LGERHYRGVQAQTEIPGT 390
Query: 566 FVAGLTVARELLESYGCVVRVISPWKTDAALG--SGGTRVELWLP 608
+ G+ +A++L+E + V SP A + GT +WLP
Sbjct: 391 GL-GIAIAKQLIEQMHGEIEVKSPALNLAITSPQTPGTTFIVWLP 434
>gi|298491547|ref|YP_003721724.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
0708]
gi|298233465|gb|ADI64601.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
0708]
Length = 458
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 149/336 (44%), Gaps = 57/336 (16%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I + LA+A ++DQ+ LQQ + + NL+ Q R PL++I+T K+L
Sbjct: 158 IAKILAIACILDQRRAWLQQQLHQQQVLQEEQRDLLDNLLHQFRNPLTAIRTFGKLLFKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ + D+ I+ + DRL+ LQ+ + LT +++ +A PES
Sbjct: 218 LRPADQNRDVATSIVRESDRLQELLQQFDQVIDLTSSDL-------------TAIPLPES 264
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
S++ AK PPL L P + C ++D+L
Sbjct: 265 -------------------KVVVEASVEKDAK------PPL-LLPGTGEDVTDCYLTDLL 298
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + +A Q+R +EL +++ ++L LV ALR+ LSN+I+ AL T GG +
Sbjct: 299 LPLLISAQAIA--QERNLELIADIPENLPLVKANIKALREVLSNIIDNALKYTPAGGSIW 356
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAR 574
I + A + I+D+GP + H G + + + + G+ +A+
Sbjct: 357 IQAGQKKANFQGIAINDNGPGIPAEDLQH----LGERRYRGVQAQTEIPGTGL-GIAIAK 411
Query: 575 ELLESYGCVVRVISPWKTD--AALGSGGTRVELWLP 608
+L+ + V SP +++ GT +WLP
Sbjct: 412 QLIAQMHGEIEVFSPAFNSNISSVQHPGTTFIIWLP 447
>gi|334121190|ref|ZP_08495264.1| histidine kinase [Microcoleus vaginatus FGP-2]
gi|333455476|gb|EGK84125.1| histidine kinase [Microcoleus vaginatus FGP-2]
Length = 463
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 152/359 (42%), Gaps = 86/359 (23%)
Query: 283 NICRSLAMAYVMDQKSMLLQQ---SSWQNNAR----MSNLVEQIRGPLSSIQTLSKMLSL 335
I R+LA+A ++DQ+S +QQ +S Q A+ M NL+ Q + PL++++T K+L+
Sbjct: 155 QIARTLALACILDQRSQWMQQELGTSRQIQAQVYDTMHNLLHQFKSPLTALRTFGKLLAR 214
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + ++ I+ + DRL+ L + V +A++ + + A S+ E
Sbjct: 215 RLVPEDKNRNVAFSIVRESDRLQELLGQFDRTVDTGEAHL-----KLRSGTSEKAISNVE 269
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SIR PLSL +PA +++ C V++V
Sbjct: 270 SIRH-------------------SPLSL-SPAANLQ----------------ESCFVAEV 293
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + +A +R ++L ++L L V + ALR+ LSNLI+ AL T G ++
Sbjct: 294 LKPLLISAEAMA--SERNLKLVADLEADLPPVRANDRALREVLSNLIDNALKYTPAGRQI 351
Query: 514 EI-VSAAAPAGD---------ALVVIDDDGP-----DMHYMTQMHSLTPFGSELFSENMV 558
I V A GD V + D G D+ ++ + H + E +
Sbjct: 352 YIKVRYKAADGDRAGYSQLPAIAVAVSDTGSGIPPQDLEHLFERH----YRGEKAQTEIP 407
Query: 559 EDNMTWNFVAGLTVARELLESYGCVVRVISP----WKTDAALG-----SGGTRVELWLP 608
+ GL +AR+L+ + V SP W A GT +WLP
Sbjct: 408 GTGL------GLAIARDLVRQMQGEIEVFSPVNPEWLPSAETNLLYPTDRGTTFVVWLP 460
>gi|428214173|ref|YP_007087317.1| histidine kinase [Oscillatoria acuminata PCC 6304]
gi|428002554|gb|AFY83397.1| histidine kinase [Oscillatoria acuminata PCC 6304]
Length = 475
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 143/353 (40%), Gaps = 64/353 (18%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLVEQIRGPLSS 325
++ +R+ +I +++A+A ++D++ L Q + + + NL+ Q+R PL++
Sbjct: 167 WTDRERMQIESIAQTIAIACILDRRQRWLSQQLRQHQRLQAEQHDLLDNLLHQVRSPLTA 226
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
++T K+L ++ + + DI I+ + DR++ LQ++ A+
Sbjct: 227 LRTFGKLLLKRLREPDPNRDIAGSILRESDRVQELLQQMNLAI----------------- 269
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
PE I + L+ L L PA D+E
Sbjct: 270 -------EPEEIAGVPEVQTEVPSETPMLEKRSPQLLL--PAFDVE-------------- 306
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEP-ALRQALSNLIEGA 503
PC++ VL L + + +A +R +EL +++ L + + P ALR+ LSNLI+ A
Sbjct: 307 ---PCDILTVLEPLLISAQAIAS--ERHLELTTQIPAELPLVLASPKALREVLSNLIDNA 361
Query: 504 LMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
L T GGK+ + + + ++ D L + + ++
Sbjct: 362 LKYTPSGGKIYVKVGDQHQIEGVTLMATAISDTGIGIPPQDLEQLFQRYYRGVKAQSDIP 421
Query: 564 WNFVAGLTVARELLESYGCVVRVISP---------WKTDAALGSGGTRVELWL 607
+ GL +AREL+ + V SP W+ + GT +WL
Sbjct: 422 GTGL-GLAIARELITQMQGKIEVFSPTPPQWQDPNWQNQPSSNHPGTTFIVWL 473
>gi|412990732|emb|CCO18104.1| predicted protein [Bathycoccus prasinos]
Length = 461
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Query: 185 AEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSE 244
AE L +++ +P A+V P+ ++G LV ELPL ++ T P A G
Sbjct: 62 AETLLLNKEYFFLPSTNAMVVPLTLEGLLIGLLVGELPLPDIS---TNSPAAGFGSSGGG 118
Query: 245 EVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQS 304
+ S + + R +F +R N + + M ++++LL +
Sbjct: 119 KGKGK-----NRSKRRMNLNQNVDREEQFGERERQCLKNGAEAFVPVWAMQKRAVLLMKK 173
Query: 305 SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEIS--YDIVEDIMVQGDRLRGTLQ 362
++ + + + R PLS+++T++ ML ++K E S D+ + IM QGD L Q
Sbjct: 174 TYAQEQNVGDYLYDSRVPLSALRTMTGMLKTYLKADEESPAGDMADAIMAQGDILATLSQ 233
Query: 363 ELQDAVF 369
+L+DA++
Sbjct: 234 QLEDALY 240
>gi|428771937|ref|YP_007163725.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
gi|428686216|gb|AFZ46076.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
Length = 420
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 142/339 (41%), Gaps = 73/339 (21%)
Query: 284 ICRSLAMAYVMDQKSMLLQQ--SSWQN-----NARMSNLVEQIRGPLSSIQTLSKMLSLH 336
+ +++ A ++DQK + ++ +Q+ N + + Q+R PL++I+T K+L
Sbjct: 139 VAQTITFARLLDQKQQVSEEQLKRYQSLQKLQNDHLDDFFHQLRNPLTAIRTFGKLLIKR 198
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + +Y I E I+ +GDRL+ +Q+ + + + + ++N + ES
Sbjct: 199 LLGDDQNYTIAEGIVREGDRLKDLIQDFSE------------DWKVVNNISNPSLEQTES 246
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
L+ N R + +++ ++
Sbjct: 247 TSFFLTENIQR---------------------------------------LEKVDLNKLI 267
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV-- 513
L + + +A ++ +S++ + L L++ AL + L+NL++ A+ T GGK+
Sbjct: 268 IPLVQGISTIAK-EKSITFMSDIDEDLPLISTNPKALTEVLNNLLDNAVKYTPDGGKICL 326
Query: 514 EIVS-AAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
EIV + PAG+ LV+ I D G + Q H E + E+ GL
Sbjct: 327 EIVKQKSTPAGEKLVIEISDTGYGIPPEDQKHIF-----ERHYRGVQEEGNIHGTGLGLA 381
Query: 572 VARELLESYGCVVRVISP--WKTDAALGSGGTRVELWLP 608
+ +EL + + + SP W + L GT L++P
Sbjct: 382 IVKELCDKMSIDIELFSPSFWLKNQEL--NGTTFTLFIP 418
>gi|434396688|ref|YP_007130692.1| GAF sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
gi|428267785|gb|AFZ33726.1| GAF sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
Length = 440
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 147/356 (41%), Gaps = 84/356 (23%)
Query: 277 QRLNAI-NICRSLAMAYVMD------QKSMLLQQSSWQ-NNARMSNLVEQIRGPLSSIQT 328
Q L I I ++LA+A +D QK + Q+S Q R+ +L+ QIR PL++++T
Sbjct: 138 QELEQIEKIAQTLALARFLDHRYQWYQKQLAKQESLRQIEQDRLDDLLHQIRNPLTALRT 197
Query: 329 LSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388
SK+L + + + + + I+ + DRL+ L++
Sbjct: 198 FSKLLIKRLLPEDRNQSVAKSILRESDRLQELLEQ------------------------- 232
Query: 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448
F E + +N LS + ++P L P + +
Sbjct: 233 ----------------FETETQQKEEENKALTLSTTSVRLTTDLPQSSHFLLPGNISELE 276
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
++ +VL L +++ +A Q+ ++ ++EL Q+L LV ALR+ L+NLI+ AL T
Sbjct: 277 AVSILEVLKILLISLQEIAAEQEIEL-IAELPQNLPLVIANAKALREVLNNLIDNALKYT 335
Query: 508 QVGGKVEIV---SAAAPAGDAL-VVIDDDGPDM-----------HYM-TQMHSLTPFGSE 551
GGKV I P L + I D G + HY Q S P GS
Sbjct: 336 PTGGKVVIYIIEKQEQPEQSWLGIAISDSGYGIPFEEQPKIFERHYRGIQAQSDIP-GSG 394
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
L GL +A++L+E G + +ISP + GT + +WL
Sbjct: 395 L----------------GLAIAKDLVEKMGGKIEIISPNQLGKNTSLPGTTMIVWL 434
>gi|209525211|ref|ZP_03273754.1| histidine kinase [Arthrospira maxima CS-328]
gi|209494396|gb|EDZ94708.1| histidine kinase [Arthrospira maxima CS-328]
Length = 467
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSETIARTETEEVESFGDPPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLNPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|376002454|ref|ZP_09780287.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
gi|375329194|emb|CCE16040.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
Length = 467
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSETIARTETEEVESFGDPPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLSPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|303281440|ref|XP_003060012.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458667|gb|EEH55964.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 650
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 185 AEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP-------LMELQMCGTEEPDAA 237
AEA L Q+V +P A+V P+ + +VG LV E+P + + + +
Sbjct: 213 AEALLVKQRVFALPSTNALVVPLSRDNALVGLLVGEMPEGGGWKRRVSARTRAKRAKEGS 272
Query: 238 IGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297
IGF+S EV + + A ++ D + F ++ R++ A+ M ++
Sbjct: 273 IGFESEPEVEVL----EEAAGAKDAADTAEV----FGDRRQAALTAAARAIVAAWAMHRR 324
Query: 298 SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRL 357
+ ++ +++ R++ + PL++++TL MLS H+K S D+ E ++ QG+ L
Sbjct: 325 ADYATAAAVRSDRRVAGFTYAAKEPLTALKTLGGMLSSHLKPDTPSRDMAEAMLAQGETL 384
Query: 358 RGTLQELQDAVF 369
+EL+ A++
Sbjct: 385 ASLSEELESALY 396
>gi|359461939|ref|ZP_09250502.1| histidine kinase [Acaryochloris sp. CCMEE 5410]
Length = 431
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 64/322 (19%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
I +LA+A ++DQ+S L + +Q A +SNL+ Q R PL++++TL K+L
Sbjct: 129 QIADTLALACILDQRSQWLANAQYQQRALQSEQHQTLSNLLHQFRNPLTALKTLGKLLHK 188
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + I I+ Q DRL L++ A+ + +A I
Sbjct: 189 RFGEDDNNRKIAASIVEQSDRLEEMLRQFDGAIDIGEAAI-------------------- 228
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
F + G+ Q + L P + E+ + P C D+
Sbjct: 229 -------EPFETDAWGSTPQPTPPALPPSLPLGEDELHLQP-------------CQFRDI 268
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L ++ + ++Q+ ++L+ S L + + ALR+ SNL + AL T GG+V
Sbjct: 269 LQPLIQSA--VGRVEQKDLQLTVRIPSNLPPINADLSALREVCSNLFDNALKYTPAGGEV 326
Query: 514 ------EIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
++ PA +++ D GP + LT + + ++ +
Sbjct: 327 QVEVCRQVTEGRQPA--QFLLVSDSGPGIPQA----DLTRVFERQYRGVQAQTDIPGTGL 380
Query: 568 AGLTVARELLESYGCVVRVISP 589
GL +AR L+E ++ SP
Sbjct: 381 -GLAIARTLMEQMQGDIQAFSP 401
>gi|158334143|ref|YP_001515315.1| histidine kinase [Acaryochloris marina MBIC11017]
gi|158304384|gb|ABW26001.1| histidine kinase, putative [Acaryochloris marina MBIC11017]
Length = 451
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
I +LA+A ++DQ+S L + +Q A +SNL+ Q R PL++++TL K+L
Sbjct: 149 QIADTLALACILDQRSQWLANAQYQQRALQSEQHQTLSNLLHQFRNPLTALKTLGKLLHK 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEET 382
E + I I+ Q DRL L++ A+ L +A I ++ +T
Sbjct: 209 RFGEDENNRKIAASIVEQSDRLEEMLRQFDGAIDLGEAAIEPFDTDT 255
>gi|443662453|ref|ZP_21132942.1| his Kinase A domain protein [Microcystis aeruginosa DIANCHI905]
gi|443332096|gb|ELS46723.1| his Kinase A domain protein [Microcystis aeruginosa DIANCHI905]
Length = 418
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 118/314 (37%), Gaps = 66/314 (21%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q + WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLAEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + + N +P
Sbjct: 193 GNDRAITGILRESDRVRDLIAEFEAQIQQEREN------------------YP------- 227
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
++D P + P L P + + P N+ D+L L
Sbjct: 228 --------------------TVDIPLLQAQSS-PTAFLLPAGSSQLTPINLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIYGEDIALIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDG-----PDMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+V D G D + Q H G ++ + GL +A+E
Sbjct: 326 KNSVEIVFKDTGYGIARSDQERIFQRHYRGVQAGGDIPGTGL-----------GLAIAKE 374
Query: 576 LLESYGCVVRVISP 589
L+ S G + ISP
Sbjct: 375 LITSMGGTIEFISP 388
>gi|423067846|ref|ZP_17056636.1| histidine kinase [Arthrospira platensis C1]
gi|406710589|gb|EKD05796.1| histidine kinase [Arthrospira platensis C1]
Length = 467
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSENIARTETEEVESFGDQPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLSPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|425470883|ref|ZP_18849743.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9701]
gi|389883318|emb|CCI36261.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9701]
Length = 418
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 66/314 (21%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 SNDPAITGILRESDRVRDLIAEFEGQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQSS-PTAFLLPAGSSQLTPIDIHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLERIYGEDIPLIRANIPGLREVFSNLIDNALKYTAAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDG-----PDMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+V D G D + Q H G ++ + GL +A+E
Sbjct: 326 KNSVEIVFKDTGYGIARSDQERIFQRHYRGVQAGGDIPGTGL-----------GLAIAKE 374
Query: 576 LLESYGCVVRVISP 589
L+ S G + ISP
Sbjct: 375 LITSMGGTIEFISP 388
>gi|425448782|ref|ZP_18828626.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
7941]
gi|389769417|emb|CCI05726.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
7941]
Length = 418
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 66/314 (21%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDG-----PDMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+V D G D + Q H G ++ + GL +A+E
Sbjct: 326 KNSVEIVFKDTGYGIARSDQERIFQRHYRGVQAGGDIPGTGL-----------GLAIAKE 374
Query: 576 LLESYGCVVRVISP 589
L+ S G + ISP
Sbjct: 375 LITSMGGTIEFISP 388
>gi|425462136|ref|ZP_18841610.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9808]
gi|389824896|emb|CCI25775.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9808]
Length = 418
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 66/314 (21%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDG-----PDMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+V D G D + Q H G ++ + GL +A+E
Sbjct: 326 KNSVEIVFKDTGYGIARSDQERIFQRHYRGVQAGGDIPGTGL-----------GLAIAKE 374
Query: 576 LLESYGCVVRVISP 589
L+ S G + ISP
Sbjct: 375 LITSMGGTIEFISP 388
>gi|440752108|ref|ZP_20931311.1| his Kinase A domain protein [Microcystis aeruginosa TAIHU98]
gi|440176601|gb|ELP55874.1| his Kinase A domain protein [Microcystis aeruginosa TAIHU98]
Length = 418
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 66/314 (21%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVQNV 325
Query: 522 AGDALVVIDDDG-----PDMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+V D G D + Q H G ++ + GL +A+E
Sbjct: 326 KNSVEIVFKDTGYGIARSDQERIFQRHYRGVQAGGDIPGTGL-----------GLAIAKE 374
Query: 576 LLESYGCVVRVISP 589
L+ S G + ISP
Sbjct: 375 LITSMGGTIEFISP 388
>gi|425435679|ref|ZP_18816126.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9432]
gi|389679774|emb|CCH91492.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9432]
Length = 418
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 66/314 (21%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDG-----PDMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+V D G D + Q H G ++ + GL +A+E
Sbjct: 326 KNSVEIVFKDTGYGIARSDQERIFQRHYRGVQAGGDIPGTGL-----------GLAIAKE 374
Query: 576 LLESYGCVVRVISP 589
L+ S G + ISP
Sbjct: 375 LITSMGGTIEFISP 388
>gi|384251843|gb|EIE25320.1| hypothetical protein COCSUDRAFT_40602 [Coccomyxa subellipsoidea
C-169]
Length = 293
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE- 341
+ R L++A ++Q++ L + + + LVEQ+RGPLS+++TL ML + R+E
Sbjct: 12 KVARVLSLACSLEQRAALERARDAARSRHIGGLVEQVRGPLSALRTLGAML---VPRTED 68
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQ 365
++ D+ + I+VQG+RL+ + ELQ
Sbjct: 69 VTRDVADGIVVQGNRLQDLVLELQ 92
>gi|218439642|ref|YP_002377971.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7424]
gi|218172370|gb|ACK71103.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7424]
Length = 442
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 141/345 (40%), Gaps = 70/345 (20%)
Query: 283 NICRSLAMAYVMDQKS-------MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A +DQ+ + ++ NL+ Q+R PL++++T K+L
Sbjct: 150 KIVKTLAIACFLDQRQEWYQQQLQQQYLKNAHQRDQLDNLLHQLRNPLTALRTFGKLLLK 209
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
E ++++ I+ + DR++ L++ F +++I+ T + + PE
Sbjct: 210 RFLPDEKDQNVIKGIIRESDRIQDLLRQ-----FEQQSDILPQEPST-----ATVITLPE 259
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ + PL L P +ALA + P +V ++
Sbjct: 260 T-------------------ETHSPLLL-----------PSVALA------LEPVSVEEI 283
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLL-VAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L L + + LA +Q QV +S++ +L + ALR+ SNLI+ A+ T GG++E
Sbjct: 284 LTPLLISAQALAQEKQIQV-ISKVPPNLPPIGANFKALREVFSNLIDNAIKYTPAGGEIE 342
Query: 515 IVSAAAPAGDAL--VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA---G 569
VS GD + I D G + Q H +F N G
Sbjct: 343 -VSIVFRLGDDWEGIQISDTGYGIPREDQTH--------IFERRYRGVQAAGNIPGTGLG 393
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-SPAPL 613
L + ++L+E + ISP GT +W P + APL
Sbjct: 394 LAIVKDLVEQMQGKIEFISPNGKSQKQSLPGTTFIVWFPIAKAPL 438
>gi|166364182|ref|YP_001656455.1| two-component sensor histidine kinase [Microcystis aeruginosa
NIES-843]
gi|425467066|ref|ZP_18846350.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9809]
gi|166086555|dbj|BAG01263.1| two-component sensor histidine kinase [Microcystis aeruginosa
NIES-843]
gi|389830238|emb|CCI27921.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9809]
Length = 418
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 116/314 (36%), Gaps = 66/314 (21%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTAFLLPAGSGQLAPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLICANIPGLREVFSNLIDNALKYTPAGGKV-TVEVQNV 325
Query: 522 AGDALVVIDDDG-----PDMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+V D G D + Q H G ++ + GL +A+E
Sbjct: 326 KNSVEIVFKDTGYGIARSDQERIFQRHYRGVQAGGDIPGTGL-----------GLAIAKE 374
Query: 576 LLESYGCVVRVISP 589
L+ S G + ISP
Sbjct: 375 LITSMGGTIEFISP 388
>gi|307152216|ref|YP_003887600.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7822]
gi|306982444|gb|ADN14325.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7822]
Length = 436
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 130/319 (40%), Gaps = 67/319 (21%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+ +DQ+ +Q Q A R+ NL+ Q+R PL++++T K+L
Sbjct: 151 KIVKTLALGCFLDQRQEWYKQQLQQQYAKSAHQRDRLDNLLHQLRNPLTALRTFGKLLLK 210
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ E ++V+ I+ + DR++ L++ ++
Sbjct: 211 RLLADERDQNVVKGIIRESDRIQDLLRQFEE----------------------------- 241
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMP--MPPLALAPLKQNGIRPCNVS 453
N+ EN G K SL P P +P + L+ + +
Sbjct: 242 ------ENHLEGENIG-------KSTSLALPEAQANSPLLLPSITLS------LEFIAID 282
Query: 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE--PALRQALSNLIEGALMRTQVGG 511
+VL L + + LA Q++Q+ ++ + L A++ ALR+ L+NLI+ A+ T GG
Sbjct: 283 EVLTPLLISAQALA--QEKQIGVTSTIPTNLPAIKANFAALREVLTNLIDNAIKYTPAGG 340
Query: 512 KVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
+V++ V + I D G + Q H + +E + GL
Sbjct: 341 QVDVSVKFKKEDNWETIEISDTGYGIPQEDQQHIFERRYRGVQAEGSIPGTGL-----GL 395
Query: 571 TVARELLESYGCVVRVISP 589
+ ++L+E + ISP
Sbjct: 396 AIVKDLVEQMQGKIEFISP 414
>gi|425441829|ref|ZP_18822096.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9717]
gi|389717340|emb|CCH98539.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9717]
Length = 418
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 116/314 (36%), Gaps = 66/314 (21%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + ++ + DR+R + E + + Q
Sbjct: 193 GNDPAITGMLRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQSS-PTAFLLPAGSGQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLICANIPGLREVFSNLIDNALKYTPAGGKV-TVEVQNV 325
Query: 522 AGDALVVIDDDG-----PDMHYMTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+V D G D + Q H G ++ + GL +A+E
Sbjct: 326 KNSVEIVFKDTGYGIARSDQERIFQRHYRGVQAGGDIPGTGL-----------GLAIAKE 374
Query: 576 LLESYGCVVRVISP 589
L+ S G + ISP
Sbjct: 375 LITSMGGTIEFISP 388
>gi|428311851|ref|YP_007122828.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253463|gb|AFZ19422.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 488
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 49/241 (20%)
Query: 284 ICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I R+L++AY+MDQ+ +Q Q R+ +L+ Q+R PL++++T K+L
Sbjct: 150 IARTLSIAYIMDQRRAWFEQQLTQASRLKAQQRDRLDDLLHQLRNPLTALRTFGKLLFKR 209
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + D+ I+ + DRL+ L+E F T N NE + A PE+
Sbjct: 210 LLPGDRNRDLASSILRESDRLQELLKE-----FDTYLNT---NETEQPPLLLPAAVQPEA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+ N+ R + +++ VL
Sbjct: 262 SPRLGTGNWCRVTGEESSPSIIP------------------------------ISITAVL 291
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + +A Q+R + L S++ +L LV LR+ LSNLI+ AL T GGK++
Sbjct: 292 EPLIDTAKAIA--QERNLFLCSQIPSNLPLVRGNPKGLREVLSNLIDNALKYTPAGGKID 349
Query: 515 I 515
I
Sbjct: 350 I 350
>gi|411120056|ref|ZP_11392432.1| ATPase, histidine kinase/DNA gyrase B/HSP90-like protein
[Oscillatoriales cyanobacterium JSC-12]
gi|410710212|gb|EKQ67723.1| ATPase, histidine kinase/DNA gyrase B/HSP90-like protein
[Oscillatoriales cyanobacterium JSC-12]
Length = 487
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/422 (20%), Positives = 151/422 (35%), Gaps = 95/422 (22%)
Query: 180 AGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIG 239
A + A +Q + +QR +V P++ V G LV +
Sbjct: 113 ASTHSTTANAHTQMESAIADQRQIVLPLMHESMVFGLLVTQ------------------- 153
Query: 240 FQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSM 299
+ A E+++H+++ I +L++A VMDQ+
Sbjct: 154 ---------------RDDRAWEAWEHQQIE-------------RIATTLSLACVMDQRYQ 185
Query: 300 LLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMV 352
QQ Q M NL+ Q+R L+++QT K++ + + SY++ I
Sbjct: 186 WGQQEREQEKLVQLQQRDLMDNLLHQLRNSLTALQTFGKLILRRLVPGDRSYELATSITR 245
Query: 353 QGDRLRGTLQELQ---DAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSREN 409
+ +RLR Q+++ D L+ T + + P S QL
Sbjct: 246 ETERLRELAQQIELVLDVGLLS----------TPRALPPGDSDQPNSDEEQLG------- 288
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
+ + P + +P + L P + C V VL L + +A
Sbjct: 289 -----EATLDPRPIHA--------LPTVGLLPGVALTLERCLVETVLEPLLASATTIAQE 335
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL--V 527
+ + +S V ALR+ +NLIE A+ T G + V A P A +
Sbjct: 336 KNISIWVSLPDDLPPVWANPQALREVFNNLIENAIKYTPTNGHI-WVEADVPDNKAYLEI 394
Query: 528 VIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 587
+ D GP + +H + + ++ + GL +AR L+E ++
Sbjct: 395 SVSDTGPGIPPDDLLHLFERYYRGVQAKGTIPGTGL-----GLAIARSLVEQMDGKIQAF 449
Query: 588 SP 589
SP
Sbjct: 450 SP 451
>gi|409993251|ref|ZP_11276399.1| histidine kinase [Arthrospira platensis str. Paraca]
gi|291568944|dbj|BAI91216.1| two-component sensor histidine kinase [Arthrospira platensis
NIES-39]
gi|409935875|gb|EKN77391.1| histidine kinase [Arthrospira platensis str. Paraca]
Length = 467
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 134/332 (40%), Gaps = 67/332 (20%)
Query: 238 IGFQSSEEVYAFP-PS-----FDTESHAIESFD--HERM-----------RVYKFSADQR 278
I +EEV + P PS D ESH + H+RM R + ++
Sbjct: 88 IARTETEEVESVPDPSPESDWEDGESHQKQVLPLIHDRMVMGFLVTGRDDRPWNSQEQRQ 147
Query: 279 LNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSK 331
L AI +L A ++D++S LQQ Q + L+ Q++ PL++++T K
Sbjct: 148 LRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALRTFGK 205
Query: 332 MLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAY 391
+L + + +Y + ++I+ Q DR+ LQ++ ++ E L + S
Sbjct: 206 LLLKRLSPDDRNYKLADNILSQSDRMEELLQQV---------DLTAERGENLLSLPFS-- 254
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCN 451
SI + N+ + + PA DI I P
Sbjct: 255 ----SIEDSQTATVEYVNTSPEPPTPVAKSPVLLPATDI----------------IEPIK 294
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
V +++ L+ A +A +Q + ++E+ Q V ALR+ +SNL++ AL T G
Sbjct: 295 VQEIINPLWTATCAIADERQL-ICIAEIPPQVPTVRGNAKALREVMSNLLDNALKYTPPG 353
Query: 511 GKVEIVSAA------APAGDALVVIDDDGPDM 536
G++ + A P + I D GP +
Sbjct: 354 GEIYLKVAQNYAINHWPDPGVGIAISDTGPGI 385
>gi|254415162|ref|ZP_05028924.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196177968|gb|EDX72970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 476
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 147/353 (41%), Gaps = 58/353 (16%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSW--------QNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
I +L +AY+MD++ +Q W Q R+ +++ Q R PL++++T K+L
Sbjct: 150 IAGTLTLAYLMDRRRAWFEQE-WTQQRRLQVQQRDRLDDILHQFRNPLTALRTFGKLLLN 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + ++++ I+ + DRL+ LQ+ +E L + ++ S P
Sbjct: 209 RLQPDDKNHNVAASIVRESDRLKELLQDF---------------DECLDQ--DAPTSEPL 251
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
++ + S ++ P++ + E P + L P K + +++V
Sbjct: 252 TLPASASAATCPLPESDETGKIVSPVN-----SEPETDAPAIPLLPGKTLIVESFTITEV 306
Query: 456 LGDLFEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A +R +EL + Q L V ALR+ L+NLI+ AL T GG++
Sbjct: 307 LEPLLISAQAIAG--ERDLELRYSIPQDLPPVRANARALREVLNNLIDNALKYTPAGGQI 364
Query: 514 EIVSAAAPAGDAL-----VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
++ + D + I D G + H E + +
Sbjct: 365 DVEAGVGQPKDETRTMVGIAITDTGVGIPPQDIEHLF-----ERRYRGIQANTGIPGSGL 419
Query: 569 GLTVARELLESYGCVVRVI----SPW---KTDAAL------GSGGTRVELWLP 608
GL +A+ L+E + V SPW + D A+ + GT +WLP
Sbjct: 420 GLAIAKTLIEQMQGQIEVFSPAQSPWTQLQLDVAIRRSGGKSTQGTTFVVWLP 472
>gi|427709740|ref|YP_007052117.1| histidine kinase [Nostoc sp. PCC 7107]
gi|427362245|gb|AFY44967.1| histidine kinase [Nostoc sp. PCC 7107]
Length = 449
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 149/338 (44%), Gaps = 59/338 (17%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A V+DQ+ LQQ Q + NL+ Q R PL++++T K+L
Sbjct: 157 KIVQTLAIACVLDQRRAWLQQQLHQQQVLQEQQRDLLDNLLHQFRNPLTALRTFGKLLFK 216
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ +I+ + DRL+ LQ+ + + T +++ + + PE
Sbjct: 217 RLRPGDPNRDVGANIVRESDRLQELLQQFEQVIDWT-------------ELDVAPLALPE 263
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
N E + +Q KP+ L P + C ++D+
Sbjct: 264 -------NEVFVEAT---VQTEPKPI----------------LLLPGTGEKVTDCYLADL 297
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A Q+R ++L +E+ ++L LV AL++ LSN+I+ AL T GGK+
Sbjct: 298 LAPLLLSAKAIA--QERHLKLKTEIPKNLPLVRANIKALQEVLSNIIDNALKYTPKGGKI 355
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 573
I + I D GP + H G + + + + GL +A
Sbjct: 356 FIQVGQERGNCIGIAISDTGPGIPQEDIAH----LGERHYRGVQAQTEIPGTGL-GLAIA 410
Query: 574 RELLESYGCVVRVISPWKTDAALGS---GGTRVELWLP 608
++L+E + V SP ++A+ S GT +WLP
Sbjct: 411 KQLIEQMQGEIDVFSP-AINSAIASPDTPGTTFIIWLP 447
>gi|427718603|ref|YP_007066597.1| histidine kinase [Calothrix sp. PCC 7507]
gi|427351039|gb|AFY33763.1| histidine kinase [Calothrix sp. PCC 7507]
Length = 441
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 141/346 (40%), Gaps = 77/346 (22%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++DQ+ LQ Q + NL+ Q R PL++++T K+L
Sbjct: 148 IAQTLAIACILDQRRAWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTALRTFGKLLLKR 207
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ + + ++ ++I+ + DRL+ L + + LT+A++ TL N +
Sbjct: 208 LRTGDPNRNVADNIVRESDRLKELLLKFDQVIDLTEADLA-----TLSLPQNEVF----- 257
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+ F +E KP L L G + +
Sbjct: 258 ----VEATFPKE---------TKPALL------------------LPGTGEQETECALAD 286
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
V A Q+R ++L +++ +SL V AL++ LSN+I+ AL T GGK+
Sbjct: 287 LLAPLLVSAKAIAQERNLQLKAKIPRSLPRVRANIKALQEVLSNIIDNALKYTPAGGKIL 346
Query: 515 IVSAAAPAGDALVVIDDDGP-----DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
I A + I D GP D+ ++ + H + + + + G
Sbjct: 347 IQVGREKANLQGIAISDTGPGIPPEDLEHLGERH---------YRGVQAQTEIPGTGL-G 396
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSG-------GTRVELWLP 608
L +A++L+E + V SP A+ S GT +WLP
Sbjct: 397 LAIAKQLIEQMQGEIEVFSP-----AINSNITSPDTPGTTFIIWLP 437
>gi|113477356|ref|YP_723417.1| histidine kinase [Trichodesmium erythraeum IMS101]
gi|110168404|gb|ABG52944.1| histidine kinase [Trichodesmium erythraeum IMS101]
Length = 462
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 125/315 (39%), Gaps = 56/315 (17%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
M N++ Q++ PL++++T K+L + +++I I+ + DRLR ++++ + V
Sbjct: 182 MHNILHQLKSPLTALRTFGKLLLKKFLPEDKNWNITNSILRESDRLRELIEQIDETVDAG 241
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
K E L + Y E I +D ++
Sbjct: 242 K--------EILSISAENQYFQGEEI-------------------------IDV-HQEAN 267
Query: 432 MPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA 491
PL L P N + V VL L + + +A+ +++ + A
Sbjct: 268 QKYKPLGLLP-GANFLESVFVQQVLEPLLVSAKAIANENNIDLQVDFPDSLPTIKANSKA 326
Query: 492 LRQALSNLIEGALMRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG- 549
LR+ LSN+I+ AL T + G + I ++ AP I+ + +M + S T +G
Sbjct: 327 LREVLSNIIDNALKYTPIQGNIYIKLATLAPQTSHHKSINSETEEM--LAIAVSDTGYGI 384
Query: 550 -----SELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP----W-----KT 592
LF N + N GL +AR+L+ ++V SP W K
Sbjct: 385 SAKDLEHLFERNYRGEKAKTNIPGTGLGLAIARDLINEMQGKIQVYSPVETEWLPSYLKE 444
Query: 593 DAALGSGGTRVELWL 607
+ +GGT V +WL
Sbjct: 445 QDLVINGGTTVIIWL 459
>gi|428206544|ref|YP_007090897.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
gi|428008465|gb|AFY87028.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
Length = 448
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 122/316 (38%), Gaps = 82/316 (25%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
+ NL+ Q R PL++++T K+L + + + + ++I+ + DRL+ LQ+ + +T
Sbjct: 189 LDNLLHQFRNPLTALRTFGKLLLKRLLPGDANRAVADNIVRESDRLQELLQQFDRVIDMT 248
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
+ ++ +P PA ++
Sbjct: 249 EEDL-------------------------------------------EPTKSLPPATEVR 265
Query: 432 MPMP----PLALAPLKQNGIRP-CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-L 484
+P PL L P ++ C + DVL L + +A Q+R +EL ++L +L
Sbjct: 266 SAIPILNTPLPLLPNREGTQSEICTIEDVLKPLLASAWAIA--QERNLELQADLPPNLPA 323
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP---------- 534
V LR+ LSNL++ A+ T GGK+ + + + I D G
Sbjct: 324 VRAHLRELREVLSNLLDNAIKYTPPGGKIYVQAGLERDNFQGIAISDTGVGIPPQDKERI 383
Query: 535 -DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP--WK 591
D HY + G+ L GL +A+ L+E + V SP W
Sbjct: 384 FDRHYRGRQADSDIPGTGL----------------GLAIAKALIEQMQGTIEVFSPALWH 427
Query: 592 TDAALGSGGTRVELWL 607
SGGT +WL
Sbjct: 428 PTPE-SSGGTTFIVWL 442
>gi|269836214|ref|YP_003318442.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
gi|269785477|gb|ACZ37620.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
Length = 477
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ +L L E RP A + Q+ L+ + V + L +ALSNL++ AL T
Sbjct: 303 PLDLGALLDRLVEGFRPQADTKGVQLTLTIPPEPCWVQGDTHLLTRALSNLLDNALRYTP 362
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG+V + P+G + I D GP + H L + L+ + T
Sbjct: 363 SGGQVRVACRTEPSG-VIFTIADTGPGI----PAHDLPNLFAPLYRGETSRNRRTGGAGL 417
Query: 569 GLTVARELLESYG 581
GLT+AR +L ++G
Sbjct: 418 GLTIARRILLAHG 430
>gi|402847643|ref|ZP_10895918.1| two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
gi|402502050|gb|EJW13687.1| two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
Length = 586
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 28/169 (16%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ V+ ++ EA +PLA +Q+++ + + +SL +A + +R+A+ NL+ A+ +
Sbjct: 429 PADLAAVVREVVEANQPLAAKKQQEI-VVDAPKSLAIACDHDRIREAIDNLLSNAIKYSA 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT--------QMHSLTPFGSELFSENMVED 560
+GG+V + AA G A + + D GP M Q S P G E S +
Sbjct: 488 IGGEVTVTLAATAEG-ARIAVTDAGPGMSEQDLSRLFGRFQRLSARPTGGE-SSTGL--- 542
Query: 561 NMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GL++ + +++ +G V SP LG G T V L LP+
Sbjct: 543 --------GLSIVKRIVDLHGGTVSAESP-----GLGHGSTFV-LTLPA 577
>gi|443316934|ref|ZP_21046360.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
gi|442783464|gb|ELR93378.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
Length = 489
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 156/370 (42%), Gaps = 65/370 (17%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQ-------QSSWQNNARMSNLVEQIRG 321
R +K + +L + +LA+A V+DQ+ +Q + Q + R+ +L+ Q+R
Sbjct: 149 RPWKVTERHQLE--RVAHTLALACVLDQRGQWIQAQLHEHRRDQAQQSERLHDLLHQVRN 206
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++++T K+L+ ++ S+ ++ + I+ + DR+ +++ Y ++
Sbjct: 207 PLTALKTFGKLLTKRLEPSDKNHPLAAGIVRESDRM---------------TDLLGYFDQ 251
Query: 382 TLKKMNN--SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLAL 439
L++ + +A + P + + + + ++ D E+P
Sbjct: 252 VLQRRDARLTAVTLPPLLPPAADSGSAASVALHR--------DWDLAFNSTELPRAGFG- 302
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSN 498
PL I+PC + ++L L +V LA Q Q ++ + ++L V +P ALR+ +
Sbjct: 303 GPL---AIQPCLLGNLLPALLASVPTLAVESQIQFQVV-IPENLAVISADPMALREVVMT 358
Query: 499 LIEGALMRTQVGGKVEIVSAAAP------AGDAL-----VVIDDDGPDMHYMTQMHSLTP 547
L+E A VG V + + P G A +++ D GP + + Q P
Sbjct: 359 LLENAFKYCPVGSLVWVEAGVKPPVGNHDTGGAARFYQGLLVGDTGPGIPVVDQ-----P 413
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA-----LGSG--- 599
E + GL + +EL++ G V V SP T L SG
Sbjct: 414 RIFERQYRGIQAQGTIPGTGLGLAIVQELVQRMGGWVDVYSPLSTWPGSLCLPLPSGACD 473
Query: 600 -GTRVELWLP 608
GT +WLP
Sbjct: 474 RGTLFAVWLP 483
>gi|384086221|ref|ZP_09997396.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus thiooxidans ATCC 19377]
Length = 501
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 14/160 (8%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
VS++L DL + ++PL +Q Q L E L V + LRQ LSNL+ A +
Sbjct: 349 VKVSEILEDLLKRMQPLTEKKQ-QTLLCESHAPLEVYADPQRLRQILSNLVSNANKYSPA 407
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
GG++ + + A G L I+D+GP + +L E F + V +++ G
Sbjct: 408 GGQIHVQAIAEQQG-VLFRIEDEGPGI-----PEALLERVFERFYQVPVSNSLPRGTGLG 461
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
L + REL+ + W GG E+WLPS
Sbjct: 462 LAITRELVAAQDG-------WIHIQNRPQGGLSAEIWLPS 494
>gi|119510142|ref|ZP_01629281.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
gi|119465203|gb|EAW46101.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
Length = 466
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 141/338 (41%), Gaps = 59/338 (17%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A ++DQ+ LQ Q + NL+ Q R PL++I+T K+L
Sbjct: 151 KIAQTLAIACILDQRRAWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTAIRTFGKLLLK 210
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ +I+ + DRL LQ+ + T+A+ + S PE
Sbjct: 211 RLRAGDPNRDVGANIVRESDRLEELLQQFDQVIDWTEADF-------------APKSLPE 257
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ RE P P L L P + C V D+
Sbjct: 258 H-EVFVEATVQRE------------------------PKPAL-LLPGTGDKETDCFVVDL 291
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A Q+R ++L +E+ +L + AL++ SN+I+ AL T GGK+
Sbjct: 292 LTPLLVSAQAIA--QERHLQLKTEIPGNLPPIYANVKALQEVFSNIIDNALKYTPPGGKI 349
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 573
I A + I + G + H G + + + + + GL +A
Sbjct: 350 LIQVGQEKANFQGIAISNTGSGIPPEDLAH----LGERHYRGVQAQTEIPGSGL-GLAIA 404
Query: 574 RELLESYGCVVRVISPWKTDAALGSG---GTRVELWLP 608
++L++ + + SP ++++ S GT +WLP
Sbjct: 405 QQLIQQMQGEIEIFSP-AINSSMSSADAPGTTFIIWLP 441
>gi|428771377|ref|YP_007163167.1| histidine kinase [Cyanobacterium aponinum PCC 10605]
gi|428685656|gb|AFZ55123.1| histidine kinase [Cyanobacterium aponinum PCC 10605]
Length = 415
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/338 (19%), Positives = 133/338 (39%), Gaps = 76/338 (22%)
Query: 284 ICRSLAMAYVMDQKSML-------LQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++A+A +++QK + LQ+ + + + + Q+R PL++I+T +K+L
Sbjct: 137 ITNTIAIARILEQKQQITVEKLSQLQKFRQLESDHLDDFLHQLRNPLTAIRTFAKLLLKR 196
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + +Y + I + DR++
Sbjct: 197 LFVDDPNYSTSQSIYRESDRIK-------------------------------------- 218
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN--GIRPCNVSD 454
+L +FS + G +N + +LDT L +N + N+ +
Sbjct: 219 ---ELIADFSEQWQG---KNEEEIFTLDTLHTSF----------FLTENIENLEVVNIIN 262
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
V+ + E +R +A + QV L +++ + + + ALR+ ++NL++ A+ T GKV
Sbjct: 263 VIKPMLENIRIIAEEKNIQV-LEKINIDTEFILTNKKALREIINNLLDNAVKYTPNNGKV 321
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA---GL 570
I +V I D G + Q H +F + + N GL
Sbjct: 322 RIEIEQNKGDKIIVKIADTGYGIPLEDQTH--------IFERHYRGSQINGNISGTGLGL 373
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+ +EL + +++ISP++ GT L +P
Sbjct: 374 AIVKELADKINIKIKLISPFQWLENQVDNGTEFILEIP 411
>gi|386332235|ref|YP_006028404.1| sensory histidine kinase [Ralstonia solanacearum Po82]
gi|334194683|gb|AEG67868.1| sensory histidine kinase [Ralstonia solanacearum Po82]
Length = 503
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 37/188 (19%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVRESLTAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQS 482
LALA + G + LG+L +V PLA +Q+ + +
Sbjct: 307 ----------LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 483 LLVAVEE-PA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
L+ V PA LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M +
Sbjct: 357 TLLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGMSAVE 415
Query: 541 QMHSLTPF 548
+ H+ F
Sbjct: 416 RAHAFERF 423
>gi|443312527|ref|ZP_21042144.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442777505|gb|ELR87781.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 417
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 41/234 (17%)
Query: 394 PESIRSQLSNNFSRENSGNKLQNSCKPL--SLDTPAKDIEMPMPPLALAP---------- 441
P+ +++N RE+ ++LQ K ++D D+E ALAP
Sbjct: 204 PDDANRAVADNIVRES--DRLQELLKQFDRAIDLTVDDLEAQK---ALAPALTKVKSLPL 258
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
L + C V++VL L E+ R +A + ++E + V +E ALR+ LSN+I+
Sbjct: 259 LTAANSQLCVVANVLAPLVESARAIALERNLRLEADIPMNAPAVKADEGALRELLSNVID 318
Query: 502 GALMRTQVGGKVEIVSAAAPAGDAL--VVIDDDG-----PDMHYMTQMHSLTPFGSELFS 554
AL T GG++ I S GD+L + I D G D+ + + H
Sbjct: 319 NALKYTPKGGQINIQSGI--WGDSLQGIAISDTGLGIPPADLGKVFERH----------Y 366
Query: 555 ENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+ E++ GL +A+EL+ + V SP A GT+ +WLP
Sbjct: 367 RGVQENSAIPGTGLGLAIAKELVTQMQGEIEVFSP-----ASNGLGTKFIVWLP 415
>gi|404397614|ref|ZP_10989404.1| hypothetical protein HMPREF0989_03784 [Ralstonia sp. 5_2_56FAA]
gi|348612615|gb|EGY62229.1| hypothetical protein HMPREF0989_03784 [Ralstonia sp. 5_2_56FAA]
Length = 509
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 84/191 (43%), Gaps = 43/191 (22%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 308
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 309 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 355
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
L++A + PA LR+ALSNL+ A+ T GG++ V AAA ALV +DD GP M
Sbjct: 356 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRAAADGDTALVCVDDTGPGMS 414
Query: 538 YMTQMHSLTPF 548
+ H+ F
Sbjct: 415 AEERAHAFQRF 425
>gi|309782918|ref|ZP_07677638.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
gi|308918342|gb|EFP64019.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
Length = 508
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 84/191 (43%), Gaps = 43/191 (22%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 268 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 307
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 308 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 354
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
L++A + PA LR+ALSNL+ A+ T GG++ V AAA ALV +DD GP M
Sbjct: 355 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRAAADGDTALVCVDDTGPGMS 413
Query: 538 YMTQMHSLTPF 548
+ H+ F
Sbjct: 414 AEERAHAFQRF 424
>gi|427417191|ref|ZP_18907374.1| histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425759904|gb|EKV00757.1| histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 437
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 132/351 (37%), Gaps = 64/351 (18%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRG 321
R ++ S Q L ++ SLA +D+++ L+Q + + NL+ Q R
Sbjct: 117 RPWQASEQQYLQTVST--SLAAGCFLDRQNQWLRQRLKTKQALQGEQSDVFHNLLHQFRN 174
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++I T K++ + + + +Y + + I+ + RL+ + + AV + A+I
Sbjct: 175 PLTAIGTFGKLMLRRLTQDDPNYRLADGIVRESQRLKELVTDFDAAVDIGDADIA----- 229
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
Q PL P +I+ PL A
Sbjct: 230 ---------------------------------QEVTPPL---LPPDNIDTSQKPLLPAL 253
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ--SLLVAVEEPALRQALSNL 499
+ I P + DV+ L A + RQ S L LV V+ AL++ ++NL
Sbjct: 254 GRSLEITPQRLEDVIHPLIMVTVAAASERNRQFWHSPLDGFPQTLVGVDAQALQEVIANL 313
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE 559
++ A V ++ +VI D+GP + Q+H E +
Sbjct: 314 LDNAFKYAPHQEWVWLLGGLTKENYVGIVIGDNGPGIPAEDQVHLF-----ERHYRGIQS 368
Query: 560 DNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
GL +A++L+ G + +ISP T A V W+P P
Sbjct: 369 QGTIGGTGLGLAIAKDLVIQMGGTIDLISPIWTQAT-------VPPWIPIP 412
>gi|300702864|ref|YP_003744465.1| histidine kinase [Ralstonia solanacearum CFBP2957]
gi|299070526|emb|CBJ41821.1| Sensor protein, histidine kinase [Ralstonia solanacearum CFBP2957]
Length = 503
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 37/188 (19%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVREGLAAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQS 482
LALA + G + LG+L +V PLA +Q+ + +
Sbjct: 307 ----------LALARARHTGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 483 LLVAVEE-PA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
L+ V PA LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M +
Sbjct: 357 TLLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGMSAVE 415
Query: 541 QMHSLTPF 548
+ H+ F
Sbjct: 416 RAHAFERF 423
>gi|219848679|ref|YP_002463112.1| GAF sensor signal transduction histidine kinase [Chloroflexus
aggregans DSM 9485]
gi|219542938|gb|ACL24676.1| GAF sensor signal transduction histidine kinase [Chloroflexus
aggregans DSM 9485]
Length = 710
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V V+E +RQ L+NLIE A+ T GGK+ +VSA L+ + D G +
Sbjct: 586 VIVDEDRIRQVLTNLIENAMKATPRGGKI-VVSAEQQQDQILIHVTDTGKGIASELWEKI 644
Query: 545 LTPFGSE----LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGG 600
PF S L ENM GLT+ R+L+E++G + W + +G G
Sbjct: 645 FDPFYSRGNGMLAGENM---------GVGLTICRQLVEAHGGKI-----WVAHSEVGK-G 689
Query: 601 TRVELWLP 608
TR LP
Sbjct: 690 TRFSFSLP 697
>gi|428201817|ref|YP_007080406.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
gi|427979249|gb|AFY76849.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
Length = 451
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 140/338 (41%), Gaps = 60/338 (17%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQN-------NARMSNLVEQIRGPLSSIQTLSKMLSL 335
I +++A+A ++D++ QQ Q R+ +L+ Q+R PL++++T K+L
Sbjct: 155 QIAKTIALACLLDRRQSWYQQQLSQQYRIRRLEKDRLDSLLHQLRNPLTALRTFGKLLLK 214
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + +V+ I+ + DRLR LQE + + T + N TL+ +A S P
Sbjct: 215 RLLPEDRNQSVVQGILRESDRLRELLQEFEADIDATADDT---NAVTLE---TNALSLPA 268
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ + + ++ S + + K KD+ P
Sbjct: 269 A--ASVGDSPSLLLGNSLSLKATK-------VKDVLEP---------------------- 297
Query: 456 LGDLFEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L ++ R +A Q++ + LS +L +L V ALR+ LSNLI+ AL T GG V
Sbjct: 298 ---LLDSARAIA--QEKDIHLSADLCATLPPVQANSKALREVLSNLIDNALKYTPAGGTV 352
Query: 514 EIVSAAAPAGDA----LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
I + A + + D G + + H + ++ + G
Sbjct: 353 HIATGLERADGTGNWQGIAVCDTGYGIPLEDREHLFERHYRGVQAQGEIPGTGL-----G 407
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
L + REL+E + +ISP + GT +WL
Sbjct: 408 LAIVRELVEQMHGKIDLISPNEMSQNPALPGTTFIVWL 445
>gi|299065500|emb|CBJ36669.1| Sensor protein, histidine kinase [Ralstonia solanacearum CMR15]
Length = 500
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELSQSLLVAVEEP 490
LALA G P + LG+L +V PLA +Q+ + + S L+ +L V+
Sbjct: 304 LALARAHHAGQDPPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLAAALPVSGYPA 363
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
LR+ALSNL+ A+ T +GG++ V A A + ALV +DD GP M+ + + H+ F
Sbjct: 364 FLREALSNLVHNAIRYTPLGGRI-TVRAIADSDAALVCVDDTGPGMNAVERAHAFERF 420
>gi|311108365|ref|YP_003981218.1| periplasmic sensor signal transduction histidine kinase 2
[Achromobacter xylosoxidans A8]
gi|310763054|gb|ADP18503.1| periplasmic sensor signal transduction histidine kinase 2
[Achromobacter xylosoxidans A8]
Length = 458
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
Q+E+ E + L+ EE L++ + NL++ A + +V++ + AA G L+ IDDD
Sbjct: 338 QLEMPEFADGLVFRGEEQDLQEMVGNLLDNACKWAER--QVQVTALAADPGQLLIQIDDD 395
Query: 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPWK 591
GP + + +F + D GL + R+L +YG VR SP
Sbjct: 396 GPGIADEER--------ERIFLRGVRMDEQRPGSGLGLDIVRDLATTYGGQVRAERSP-- 445
Query: 592 TDAALGSGGTRVELWLPS 609
GG RV LWLP+
Sbjct: 446 ------LGGLRVSLWLPA 457
>gi|421481683|ref|ZP_15929266.1| periplasmic sensor signal transduction histidine kinase 2
[Achromobacter piechaudii HLE]
gi|400199998|gb|EJO32951.1| periplasmic sensor signal transduction histidine kinase 2
[Achromobacter piechaudii HLE]
Length = 463
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 26/159 (16%)
Query: 459 LFEAVRPLAHMQQR-------QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
L +AV+ L + QR ++E + +S L+ E+ L++ L NL++ A
Sbjct: 322 LQDAVQGLVRVMQRLYAQRGLRIEATGMSPGLVFRGEQQDLQEMLGNLLDNAC--KWAAN 379
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+V I + A AG L+ IDDDGP + + +F + D GL
Sbjct: 380 QVRITAEPAAAGRLLLHIDDDGPGIEDHER--------ERIFLRGVRMDEQLPGSGLGLD 431
Query: 572 VARELLESYGCVVRV-ISPWKTDAALGSGGTRVELWLPS 609
+ R+L +YG VR SP GG RV LWLP+
Sbjct: 432 IVRDLAGTYGGEVRAGRSPL--------GGLRVSLWLPA 462
>gi|186472992|ref|YP_001860334.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
gi|184195324|gb|ACC73288.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
Length = 592
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 459 LFEAVRPLAH---MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG---- 511
+++A+ L H ++ ++E+ L Q + V + L Q + NL+ A T GG
Sbjct: 295 IYDAITALKHHIDARKHRLEIEGLEQPVYVRADHVRLSQVVGNLLSNAAKYTPAGGTLRL 354
Query: 512 KVEIVSAAA-----PAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+V+IV A P G + I+D+G M H ELF+++ + +
Sbjct: 355 RVQIVPPGAADDESPGGKVSIAIEDNGVGMSREALDHVF-----ELFAQSQANMHRSEGG 409
Query: 567 VA-GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 608
+ GL VA+ L+E +G +R+ S G G GTRV L LP
Sbjct: 410 LGIGLAVAKRLIELHGGTIRLDSQ-------GVGHGTRVTLQLP 446
>gi|162456212|ref|YP_001618579.1| sensor histidine kinase [Sorangium cellulosum So ce56]
gi|161166794|emb|CAN98099.1| sensor histidine kinase [Sorangium cellulosum So ce56]
Length = 558
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 24/166 (14%)
Query: 447 IRPCNVSDVLGDLFEAVRP---LAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+ P V D++ +L VRP A + R VE+ E LL+ +E +RQAL NL+ A
Sbjct: 400 LEPERVDDLVQELVAFVRPELDRAGVAVR-VEVEEAGPELLL--DESQIRQALLNLLRNA 456
Query: 504 LMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
GG++ +VS + +G A + +DD GP + + PF F+ +
Sbjct: 457 REAMPKGGEI-VVSVSFSSGAATIAVDDTGPGVPEELRASIFDPF----FTTKQRGTGL- 510
Query: 564 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GL V R+++E++G + P + +GGTR + LP+
Sbjct: 511 -----GLAVTRDIIEAHGGTI-SCEPRE------AGGTRFRIALPA 544
>gi|148259864|ref|YP_001233991.1| integral membrane sensor signal transduction histidine kinase
[Acidiphilium cryptum JF-5]
gi|146401545|gb|ABQ30072.1| signal transduction histidine kinase [Acidiphilium cryptum JF-5]
Length = 441
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 29/138 (21%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL--VVIDD 531
++L+ L Q++ V A+R+ALSNL++ A IV AAAP G + +VIDD
Sbjct: 329 LDLAHLPQAV---VRPEAMRRALSNLLDNAARHAH-----RIVVAAAPEGGQMLRIVIDD 380
Query: 532 DGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPW 590
DGP + + L PF E GL +AR+++ ++G +R+ SP
Sbjct: 381 DGPGIPAERREQMLRPF----------ESGSAAGTGLGLAIARDIVAAHGGTLRLDTSPL 430
Query: 591 KTDAALGSGGTRVELWLP 608
GG RV + +P
Sbjct: 431 --------GGLRVAITIP 440
>gi|326403208|ref|YP_004283289.1| two-component sensor histidine kinase [Acidiphilium multivorum
AIU301]
gi|325050069|dbj|BAJ80407.1| two-component sensor histidine kinase [Acidiphilium multivorum
AIU301]
Length = 441
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 29/138 (21%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL--VVIDD 531
++L+ L Q++ V A+R+ALSNL++ A IV AAAP G + +VIDD
Sbjct: 329 LDLAHLPQAV---VRPEAMRRALSNLLDNAARHAH-----RIVVAAAPEGGQMLRIVIDD 380
Query: 532 DGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPW 590
DGP + + L PF E GL +AR+++ ++G +R+ SP
Sbjct: 381 DGPGIPAERREQMLRPF----------ESGSAAGTGLGLAIARDIVAAHGGTLRLDTSPL 430
Query: 591 KTDAALGSGGTRVELWLP 608
GG RV + +P
Sbjct: 431 --------GGLRVAITIP 440
>gi|386849141|ref|YP_006267154.1| histidine kinase [Actinoplanes sp. SE50/110]
gi|359836645|gb|AEV85086.1| histidine kinase [Actinoplanes sp. SE50/110]
Length = 618
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
V L + S LV V+ +RQA+ NLI A+ T GG+++I+S + AG + + D G
Sbjct: 479 VTLHTTAASALVTVDPIRIRQAVGNLITNAIRHTPSGGRIDIISGTS-AGRLRIDVTDTG 537
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 593
P + Q F + + T GL++ R+L E++ V V SP
Sbjct: 538 PGIPPEQQALVFERF----WRADKSRSRQTGGSGLGLSIVRKLAEAHAGTVTVTSP---- 589
Query: 594 AALGSGGT-RVELWLPSPAPLSDLNGKSN 621
G G T R++L + P P S G+ +
Sbjct: 590 --PGQGATFRIDLPVAGP-PGSQRAGRGS 615
>gi|198282750|ref|YP_002219071.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667905|ref|YP_002424945.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415964791|ref|ZP_11558007.1| sensor histidine kinase [Acidithiobacillus sp. GGI-221]
gi|198247271|gb|ACH82864.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218520118|gb|ACK80704.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339833033|gb|EGQ60908.1| sensor histidine kinase [Acidithiobacillus sp. GGI-221]
Length = 494
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V+DVL DL + ++PL ++ Q+ S+ L V + LRQ L+NL+ A + GG
Sbjct: 344 VADVLLDLQKRMQPLTD-KKNQILDCVGSEGLGVYADPQRLRQILTNLVSNAHKYSPAGG 402
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+++ V A A G L + D+GP + +L E F + V + + GL
Sbjct: 403 QIK-VRATAQQGGTLFCVSDNGPGIP-----DALLERVFERFYQVPVSNRLPRGTGLGLA 456
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ REL+ + G +R+ + GG E+WLP+
Sbjct: 457 ITRELVGAQGGWIRMHNR-------PGGGLCAEIWLPA 487
>gi|241664448|ref|YP_002982808.1| histidine kinase [Ralstonia pickettii 12D]
gi|240866475|gb|ACS64136.1| histidine kinase [Ralstonia pickettii 12D]
Length = 508
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 43/191 (22%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 308
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 309 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 355
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
L++A + PA LR+ALSNL+ A+ T GG++ V A A ALV +DD GP M+
Sbjct: 356 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRATADGDAALVCVDDTGPGMN 414
Query: 538 YMTQMHSLTPF 548
+ H+ F
Sbjct: 415 ADERAHAFQRF 425
>gi|172038240|ref|YP_001804741.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
gi|354554407|ref|ZP_08973712.1| GAF sensor signal transduction histidine kinase [Cyanothece sp.
ATCC 51472]
gi|171699694|gb|ACB52675.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
gi|353554086|gb|EHC23477.1| GAF sensor signal transduction histidine kinase [Cyanothece sp.
ATCC 51472]
Length = 430
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/352 (20%), Positives = 145/352 (41%), Gaps = 63/352 (17%)
Query: 267 RMRVYKFSADQRLNAINICRSLAMAYVMDQKS-------MLLQQSSWQNNARMSNLVEQI 319
R Y + ++ I +LA+A ++DQ+ L Q+ Q R+ +L Q+
Sbjct: 128 RREAYPWKPEEFNQIEKIADTLAIARLLDQRQGWYQKQLQLQQRQQQQERDRLDDLFHQL 187
Query: 320 RGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379
R PL++++ K+L + + S IV +I+ +G+ L+ ++E + + +V +
Sbjct: 188 RNPLTALKVFGKLLLKRLGTDDQSRSIVNNIVREGEHLQELIKEFESH----QKGMV--D 241
Query: 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLAL 439
E + +N ++ + P+ + L P++ +E+
Sbjct: 242 ETDIITLNTNSVAIPDRLSPSLP-----------------------PSQSLEL------- 271
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNL 499
P N+ D+L + + +A + +++ + V + ALR+ LSNL
Sbjct: 272 --------SPINLWDILETVIMSAESIAENKGIDLQVEKFDHLDAVLGNKSALREVLSNL 323
Query: 500 IEGALMRTQVGGKVEI-VSAAAPAGDAL---VVIDDDGPDMHYMTQMHSLTPFGSELFSE 555
I+ ++ T GKV I + + D ++I+D G + Q H E
Sbjct: 324 IDNSIKYTPASGKVRIKLGLSKVINDKRYQGILIEDTGYGIPREDQEHIF-----ERHYR 378
Query: 556 NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
E++ GL + +EL+ G ++ + SP + GTR+ LWL
Sbjct: 379 GSQENSEIAGSGLGLAIVKELVTQMGGLIELSSPINLE---NKTGTRIILWL 427
>gi|452820149|gb|EME27195.1| two-component sensor histidine kinase [Galdieria sulphuraria]
Length = 505
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 49/284 (17%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
SNL+ Q + PL +I+T +K+L + +I+ ++V++I+ Q DRL+ L LQ
Sbjct: 238 FSNLLHQAQSPLMAIKTFAKLLLKRLPSEDINKELVQNILFQADRLQELLSPLQH----- 292
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
MN SH +S +S P+ L+ + E
Sbjct: 293 --------------MNERLLSHIKS----------------DTISSSIPIQLEASKESRE 322
Query: 432 MPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEE 489
L+ K + C + DV+ + +VR A +++ + S + + V+E
Sbjct: 323 AE----NLSSQKSISLHLCWLKDVIQPVLSSVRCFA--REKGIRFSSKIERDMPPCLVDE 376
Query: 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID--DDGPDMHYMTQMHSLTP 547
LR+ + N+ E A+ T GG + V + ++ V ID D G + Q+
Sbjct: 377 RMLREVVLNICENAIKFTPTGGVIR-VDCYWDSKNSCVSIDICDTGLG---IPQVELSKV 432
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWK 591
F + N+V + T GL++A E+++ + + SP K
Sbjct: 433 FDRGYRASNVVFNTATPGNGIGLSIAFEMVQKMRGNLSITSPGK 476
>gi|298244598|ref|ZP_06968404.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
gi|297552079|gb|EFH85944.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
Length = 285
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
PC+ S + G++ E R + RQ+EL +++ + L Q + NL+ AL +
Sbjct: 122 PCDFSKICGEVVENQRTYS---GRQIELQLPPDPIIIQADGKRLTQVVINLVSNALHYSL 178
Query: 509 VGGKVEIVSAAAPAGDALVV--IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+ ++S A DA V+ + ++GP + Q H PF ++E + W
Sbjct: 179 ---EDTVISIGAHVEDASVLFQVHNEGPALSLEQQSHLFDPFYRTPYAETFFREG--WGL 233
Query: 567 VAGLTVARELLESYGCVVRVIS 588
GLTV++E++E +G + V S
Sbjct: 234 --GLTVSKEIVERHGGQIWVKS 253
>gi|170078559|ref|YP_001735197.1| putative two-component sensor histidine kinase [Synechococcus sp.
PCC 7002]
gi|169886228|gb|ACA99941.1| putative two-component sensor histidine kinase [Synechococcus sp.
PCC 7002]
Length = 438
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 119/316 (37%), Gaps = 64/316 (20%)
Query: 284 ICRSLAMAYVMDQKS-----MLLQQSSWQ--NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I L +A V+DQ+ L QQ Q +L+ Q+R P +I T K+L
Sbjct: 140 IAEGLVLACVLDQQKSWATERLTQQQHLQALEQEHFHDLLHQLRNPTMAISTFGKLLLKR 199
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ +E +Y + E I+ + DRL+G L + + V L A I
Sbjct: 200 LLPTEKNYPVAEGIVRESDRLKGLLTQFSEEVDLLTAQI--------------------- 238
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP---LALAPLKQNGIRPCNVS 453
QL S + +PP L+ AP + + P V+
Sbjct: 239 --PQLEGGPS-------------------------LALPPNGELSFAPDRSLSVEPLPVA 271
Query: 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
+V+ L ++ +A + + S V AL + L+NL+E AL T GG+V
Sbjct: 272 EVVLPLVASLGAIATERGITLNYRLPEPSPWVLGNHTALMEVLNNLLENALKYTPSGGQV 331
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 573
+ A A + + + D G + H + +E+ +E GL +A
Sbjct: 332 -FLQVEAQAHELTIAVHDTGYGIPPADLPHVFERHYRGVQAESAIEGTGL-----GLAIA 385
Query: 574 RELLESYGCVVRVISP 589
+L+ + V SP
Sbjct: 386 ADLVGKMAGDIEVYSP 401
>gi|83747532|ref|ZP_00944570.1| Two component system histidine kinase [Ralstonia solanacearum
UW551]
gi|207744493|ref|YP_002260885.1| transmembrane sensor kinase protein [Ralstonia solanacearum
IPO1609]
gi|83725846|gb|EAP72986.1| Two component system histidine kinase [Ralstonia solanacearum
UW551]
gi|206595899|emb|CAQ62826.1| transmembrane sensor kinase protein [Ralstonia solanacearum
IPO1609]
Length = 503
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQSLLVAVEE-PA 491
LALA + G + LG+L +V PLA +Q+ + + L+ V PA
Sbjct: 307 LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLDTLLPVSGYPA 366
Query: 492 -LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M + + H+ F
Sbjct: 367 FLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGMSAVERAHAFERF 423
>gi|421895818|ref|ZP_16326217.1| transmembrane sensor kinase protein [Ralstonia solanacearum MolK2]
gi|206586983|emb|CAQ17567.1| transmembrane sensor kinase protein [Ralstonia solanacearum MolK2]
Length = 503
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQSLLVAVEE-PA 491
LALA + G + LG+L +V PLA +Q+ + + L+ V PA
Sbjct: 307 LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLDTLLPVSGYPA 366
Query: 492 -LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M + + H+ F
Sbjct: 367 FLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGMSAVERAHAFERF 423
>gi|428305252|ref|YP_007142077.1| GAF sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428246787|gb|AFZ12567.1| GAF sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 827
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
IRP N+ V+ +AVRP A+ + Q+EL S LV+ + ++Q L NL+ A+
Sbjct: 519 IRPVNLLPVIESAIDAVRPAANAKAIQLELVPNSSIGLVSADSDRIQQVLWNLLSNAIKF 578
Query: 507 TQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
T GGKV++ + + + V+D G ++ P+ E FS+ ++
Sbjct: 579 TPDGGKVKVQLDSTDSQVQIQVVDTGKGISPEFL-------PYVFERFSQADSTSTRSYG 631
Query: 566 FVA-GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 608
+ GL + R L+E +G V+ S LG G G +++P
Sbjct: 632 GLGLGLAIVRHLVELHGGTVKADS-------LGEGQGATFTIYIP 669
>gi|167033577|ref|YP_001668808.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
gi|166860065|gb|ABY98472.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
Length = 421
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V ++L + E R A M+Q QV L + + L+ E L + N+I A+ T VG
Sbjct: 273 DVVELLAQIVEDARFEAGMKQCQVSL-QAQGAFLIHGHEELLYRGFENIIRNAVRYTAVG 331
Query: 511 GKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
+V + +A AP G V + D GP + PF + D+ F G
Sbjct: 332 TEVLVEAAMAPGGQWFQVCVSDHGPGVDPARLPRIFEPF-------DRGADSDGDGFGLG 384
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
L +A+ + +G + T A +GG RV + LP +P
Sbjct: 385 LAIAQRAIALHGGSI-------TAQAAATGGLRVRIELPQASP 420
>gi|332638567|ref|ZP_08417430.1| histidine protein kinase; sensor protein [Weissella cibaria KACC
11862]
Length = 456
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
LA +P + + + P NV+++ ++FEA +P A Q++ +E+S S V +E +RQ L
Sbjct: 296 LAKSPERLSKVAPVNVANIATEIFEANKPAADTLGLQLQ-NEISPSFTVNQDESVVRQIL 354
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+NLI A+ + GG V+ V+A A + ++ + D G
Sbjct: 355 TNLIVNAIKYNRPGGLVK-VAAMVTASEFVMAVKDTG 390
>gi|220932166|ref|YP_002509074.1| integral membrane sensor signal transduction histidine kinase
[Halothermothrix orenii H 168]
gi|219993476|gb|ACL70079.1| integral membrane sensor signal transduction histidine kinase
[Halothermothrix orenii H 168]
Length = 463
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSEL---SQSLLVAVEEPALRQALSNLIEGALMRTQ 508
+++ L DL + P A +++Q++L + QS+ + E ALR NLI +L T
Sbjct: 313 LANFLEDLLNSYLPQA--REKQIDLIKKYNPEQSIFIDSNEDALRTIFGNLINNSLKYTP 370
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GGK+EI + ++ A++ + D+G + L + + +
Sbjct: 371 EGGKIEI-TLSSKKNQAIISVKDNGTGI----SAEDLPYIFERFYRADKSRSTRSGGTGI 425
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GLT+ REL+ S G ++I+ + G G T ++LPS
Sbjct: 426 GLTITRELVNSIGG--KIIA---SSEGRGKGAT-FTVYLPS 460
>gi|167648307|ref|YP_001685970.1| integral membrane sensor signal transduction histidine kinase
[Caulobacter sp. K31]
gi|167350737|gb|ABZ73472.1| integral membrane sensor signal transduction histidine kinase
[Caulobacter sp. K31]
Length = 450
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L E V A ++ELS + L + A ++AL+NLI+ A G V + S
Sbjct: 315 LIEGVCEGAQRAGARIELS-IGDDLSAILRPQAFKRALANLIDNAAAH---GETVRVSST 370
Query: 519 AAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 578
AAPAG + IDDDGP + + PF S N E + GL +AR++
Sbjct: 371 AAPAGGVWIFIDDDGPGIPEDRYEEAFRPFNRLDESRNQNEKGVG----LGLAIARDMAR 426
Query: 579 SYG 581
G
Sbjct: 427 GLG 429
>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
Length = 1311
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV 487
+ IEM LAL N+ D+L ++E+ P++ + + + ++ L+
Sbjct: 867 RRIEMKGETLALETF--------NLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLITA 918
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD---ALVVIDDDGPDMHYMTQMHS 544
+ P + + ++NL+ A T GG V + + P+ A++ ++DDG + Q H
Sbjct: 919 DSPKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPAEEQEHI 978
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
F + N +DN GL VA+E ++ + + V S
Sbjct: 979 FERF----YQANSHKDNTGSGI--GLNVAKEYVQLHNGKIEVSS 1016
>gi|288940033|ref|YP_003442273.1| integral membrane sensor signal transduction histidine kinase
[Allochromatium vinosum DSM 180]
gi|288895405|gb|ADC61241.1| integral membrane sensor signal transduction histidine kinase
[Allochromatium vinosum DSM 180]
Length = 471
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ DL E PLA ++++++ + + S++V + L Q ++NL++ A+ TQ
Sbjct: 323 PVDLVPLIEDLVELYEPLAAEREQRLDWTAGASSIVVEGDRDLLFQVMANLVDNAIKYTQ 382
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG +++ +A G A V++ DDGP +
Sbjct: 383 PGGHIQLAVDSA-GGQARVLVADDGPGI 409
>gi|421890533|ref|ZP_16321391.1| Sensor protein, histidine kinase [Ralstonia solanacearum K60-1]
gi|378964143|emb|CCF98139.1| Sensor protein, histidine kinase [Ralstonia solanacearum K60-1]
Length = 503
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 37/188 (19%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVRESLAAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG+L +V PLA +Q+ + + S L
Sbjct: 307 ----------LALARARHTGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
L V+ LR+ALSNL+ A+ T G++ V A A G ALV +DD GP M +
Sbjct: 357 TQLPVSGYPAFLREALSNLVHNAIRYTPPSGRI-TVRAIADCGAALVCVDDTGPGMSAVE 415
Query: 541 QMHSLTPF 548
+ H+ F
Sbjct: 416 RAHAFERF 423
>gi|444911806|ref|ZP_21231978.1| Multi-sensor Hybrid Histidine Kinase [Cystobacter fuscus DSM 2262]
gi|444717682|gb|ELW58506.1| Multi-sensor Hybrid Histidine Kinase [Cystobacter fuscus DSM 2262]
Length = 2031
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
V +++ D E+ P A + Q++ E+ LL+ ++ + QAL NL+ A+ T G
Sbjct: 868 RVEEIVRDARESFEPHAAEKGLQLDF-EVEPGLLLWCDKERILQALGNLLSNAIKFTPPG 926
Query: 511 GKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
G++ + A A GD + + D GP + Q H + E ++N E + G
Sbjct: 927 GRILLRAEAEAGTGDIRLSVTDTGPGVPLAAQSHIFDRYWHE--AQNKREGHGL-----G 979
Query: 570 LTVARELLESYGCVVRV 586
L++A+ ++ES+G +R+
Sbjct: 980 LSIAKGIVESHGGRIRL 996
>gi|328542626|ref|YP_004302735.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
[Polymorphum gilvum SL003B-26A1]
gi|326412372|gb|ADZ69435.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
[Polymorphum gilvum SL003B-26A1]
Length = 525
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 478 ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
EL+ L V + LRQ + L+E A+ ++ IV A A + + DDGP +
Sbjct: 388 ELAGDLFVDGDADWLRQVIGGLLENAIKYAGANCRISIVLTAREDA-AELWVRDDGPGLE 446
Query: 538 YMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALG 597
Q F D F GL +AR ++E +G +R++SPWK
Sbjct: 447 PRLQERVFERFARG--------DAGGRGFGVGLALARWIVEDHGGRIRLVSPWKD----- 493
Query: 598 SGGTRVELWLP 608
GT V + LP
Sbjct: 494 GRGTAVGVILP 504
>gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
Length = 531
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+ +++ D+F +R L + + +E++ L V + Q L+NL+ AL T G
Sbjct: 375 KIDELIEDIFLRMRHLFNNKGITLEVARNKNQLPVWADRGKTGQVLTNLLSNALKFTTTG 434
Query: 511 GKVEIVSAAAPAG-DALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA- 568
GKV + S + +G D ++ + D G + Q PF V+ T N+
Sbjct: 435 GKVVVESNSGDSGRDVIITVRDTGIGIDIRDQEKIFQPF-------YQVDGTSTRNYGGM 487
Query: 569 --GLTVARELLESYGCVVRVIS 588
GL +A++L+E +G +RV S
Sbjct: 488 GIGLNLAKKLVELHGGTIRVSS 509
>gi|427714285|ref|YP_007062909.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
gi|427378414|gb|AFY62366.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
Length = 431
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 134/323 (41%), Gaps = 70/323 (21%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSW----QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
+ +LA+ VMDQ+ L Q+ Q + NL+ Q R PL ++QTL+K+L ++
Sbjct: 155 QVANTLAIGCVMDQRHQWLSQAQAPTLAQQQDVLGNLLHQFRNPLMALQTLTKLLLKRLQ 214
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIR 398
+ + IVE I +G RL+ +++ Q
Sbjct: 215 APDKNRPIVESIWQEGQRLQSLVEQFQ--------------------------------- 241
Query: 399 SQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
L+ S PL+ T A L+LAP N +RP ++ +
Sbjct: 242 -------------ATLEASPHPLAPVTTAS--------LSLAPAALN-LRPTDLVGTIQP 279
Query: 459 LFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEP-ALRQALSNLIEGALMRTQVGGKVEI- 515
L AV+ A + ++ L E + L A+ +P AL+ + NL++ A T +GG++ +
Sbjct: 280 LLTAVQ--ARASESEITLKVEWAPQLPPALIDPIALQDIVGNLLDNACKYTSLGGEIHLQ 337
Query: 516 VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+P L+++ D GP + +H G + + + + G+ +A+
Sbjct: 338 TRLLSPTTQGLLIV-DTGPGIPPGDLLH----LGERGYRGQQAQGTIPGTGL-GIAIAKN 391
Query: 576 LLESYGCVVRVISPWKTDAALGS 598
L+ G + + SP+ D+ G+
Sbjct: 392 LVAQMGGSLTIQSPFPPDSGQGT 414
>gi|298291052|ref|YP_003692991.1| integral membrane sensor signal transduction histidine kinase
[Starkeya novella DSM 506]
gi|296927563|gb|ADH88372.1| integral membrane sensor signal transduction histidine kinase
[Starkeya novella DSM 506]
Length = 530
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V D++ DL E+++P+A +E + + L++ + LRQ LI A+ + G
Sbjct: 371 VCDLITDLRESMQPVARAAGLTLETACMPDDLVIDADRDWLRQTFDGLIANAVRHSPPGE 430
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
V V AA AGD ++ + D G + H F E F GL
Sbjct: 431 TVR-VEAAREAGDVVIRVSDHGTGIPSDDLPHVFERFWRGAAREGT-------GFGIGLA 482
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
+A+ +++ +G + + S D GGT V + LP+P P
Sbjct: 483 LAKWIVDRHGGRIEIDSR-VADGEGRRGGTCVTVRLPTPVP 522
>gi|344172647|emb|CCA85301.1| sensor protein, histidine kinase [Ralstonia syzygii R24]
Length = 503
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG L +V PLA +Q+ + + S L+
Sbjct: 307 ----------LALARARHAGQDAPPETFDLGALARSVVVDALPLAREKQQDLGWDDSGLA 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
+L V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M +
Sbjct: 357 TTLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGMSAVE 415
Query: 541 QMHSLTPF 548
+ H+ F
Sbjct: 416 RAHAFERF 423
>gi|302387090|ref|YP_003822912.1| integral membrane sensor signal transduction histidine kinase
[Clostridium saccharolyticum WM1]
gi|302197718|gb|ADL05289.1| integral membrane sensor signal transduction histidine kinase
[Clostridium saccharolyticum WM1]
Length = 345
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+SD+ D+++ A +Q+ + LS ++ + + + +A+SN+++ AL T
Sbjct: 196 PENISDMFNDIYQHFEFRAKGEQKTILLSG-PDNIELFCDRNWITEAISNIVKNALDHTD 254
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG++ I PA ++V D+G +H H F FS++ T
Sbjct: 255 TGGRIAIEWKKLPAVTQIIV-RDNGSGIHPEDIHHIFKRFYRSRFSKD------TQGIGL 307
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 603
GL +A+ ++E++ + V D+ LG G V
Sbjct: 308 GLPLAKAIVEAHDGNITV------DSVLGGGSVFV 336
>gi|393767917|ref|ZP_10356461.1| integral membrane sensor signal transduction histidine kinase
[Methylobacterium sp. GXF4]
gi|392726728|gb|EIZ84049.1| integral membrane sensor signal transduction histidine kinase
[Methylobacterium sp. GXF4]
Length = 544
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 32/184 (17%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP ++ VL + + + A ++ + L SQ + + LRQ + +L++ AL
Sbjct: 371 RPLGLASVLAEAVDNMGSEAARRRVALSLDPGSQDVECLADREWLRQTVESLVDNALRHA 430
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS------ELFSENMVEDN 561
+ +VE+ +A P A + + DDGP FG+ E F
Sbjct: 431 KGLTRVEVALSAEPGARARITVTDDGPG------------FGASEAELFERFRRGAGASP 478
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG----GTRVELWLPSPAPLSDLN 617
F GL +AR ++E +G ++R LG+G G RV L +P+ P ++
Sbjct: 479 DETGFGIGLALARWIVEQHGGIIR----------LGAGPDGRGARVSLDMPALDPAWEIG 528
Query: 618 GKSN 621
N
Sbjct: 529 TVGN 532
>gi|300690244|ref|YP_003751239.1| sensor protein, histidine kinase [Ralstonia solanacearum PSI07]
gi|299077304|emb|CBJ49930.1| Sensor protein, histidine kinase [Ralstonia solanacearum PSI07]
Length = 503
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG L +V PLA +Q+ + + S L+
Sbjct: 307 ----------LALARARHAGQDAPPETFDLGALARSVVVDALPLAREKQQDLGWDDSGLA 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
+L V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M +
Sbjct: 357 TTLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGMSAVE 415
Query: 541 QMHSLTPF 548
+ H+ F
Sbjct: 416 RAHAFERF 423
>gi|187930280|ref|YP_001900767.1| integral membrane sensor signal transduction histidine kinase
[Ralstonia pickettii 12J]
gi|187727170|gb|ACD28335.1| integral membrane sensor signal transduction histidine kinase
[Ralstonia pickettii 12J]
Length = 509
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 33/186 (17%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L L+
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQLLALARARH 316
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A + P L L + DV+ D PLA +++Q +L L++A
Sbjct: 317 AGQ-DAPAETFDLGVLAR---------DVVVDAL----PLA--REKQQDLGWDDGGLVMA 360
Query: 487 ---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM 542
+ PA LR+ALSNL+ A+ T GG++ V A A ALV +DD GP M+ +
Sbjct: 361 LPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRATADGDAALVCVDDTGPGMNADERA 419
Query: 543 HSLTPF 548
H+ F
Sbjct: 420 HAFQRF 425
>gi|344169049|emb|CCA81372.1| sensor protein, histidine kinase [blood disease bacterium R229]
Length = 503
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG L +V PLA +Q+ + + S L+
Sbjct: 307 ----------LALARARHAGQDAPPETFDLGALARSVVVDALPLAREKQQDLGWDDSGLA 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
+L V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M +
Sbjct: 357 TTLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGMSAVE 415
Query: 541 QMHSLTPF 548
+ H+ F
Sbjct: 416 RAHAFERF 423
>gi|386011967|ref|YP_005930244.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
gi|313498673|gb|ADR60039.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
Length = 420
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGA 503
N +V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A
Sbjct: 267 NDFASVDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNA 324
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
+ T+ G V + +A AP G L V + D GP + PF S +
Sbjct: 325 VRYTKTGTAVLVKAAPAPGGQWLQVCVSDHGPGVDPARLQRIFEPFDRGTDSSD------ 378
Query: 563 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
F GL +A+ + +G + T A +GG RV + LP
Sbjct: 379 --GFGLGLAIAQRSIALHGGSI-------TALAAATGGLRVRIELP 415
>gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3
str. Alaska E43]
gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3
str. Alaska E43]
Length = 681
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+SD+ + F ++ LA+ + ++ L+ ++ ++ L+Q L NLI ++ T+ GG
Sbjct: 522 ISDIAMESFSVLKSLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGG 581
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA--- 568
K++I A L +I+D+G + Q F V+++ +
Sbjct: 582 KIQINITKNLAYMKL-IIEDNGIGIKKEDQKRIFNEF-------EQVDNSYERKYEGTGL 633
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 617
GL + ++L+E +G + +IS T GT++ + +P + ++ N
Sbjct: 634 GLPLTKKLVEMHGGEIFLISNIGT-------GTKIIITIPFQSEENNYN 675
>gi|407957788|dbj|BAM51028.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
Length = 409
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 272 KFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLS 324
++ ++ + I +SLA+A ++DQ+ +Q+ + N + ++L+ Q+R PL+
Sbjct: 108 QWHGEEMMQLEAIAKSLAVACLLDQQQDWYRQAWEEQNQQYQWERQHWADLLHQLRNPLT 167
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
+++T SK+L S +VE I+ QG+ L+ LQ +
Sbjct: 168 ALKTFSKLLLKRWHGDNKSQQVVEGIVRQGEHLQELLQSFE 208
>gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 681
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+SD+ + F ++ LA+ + ++ L+ ++ ++ L+Q L NLI ++ T+ GG
Sbjct: 522 ISDIAMESFSVLKSLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGG 581
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA--- 568
K++I A L +I+D+G + Q F V+++ +
Sbjct: 582 KIQINITKNLAYMKL-IIEDNGIGIKKEDQKRIFNEF-------EQVDNSYERKYEGTGL 633
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 617
GL + ++L+E +G + +IS T GT++ + +P + ++ N
Sbjct: 634 GLPLTKKLVEMHGGEIFLISNIGT-------GTKIIITIPFQSEDNNYN 675
>gi|392426651|ref|YP_006467645.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391356614|gb|AFM42313.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 591
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
L+LA + + N++D++ +L+ ++ A ++V L+ L+++ + ++ ++Q +
Sbjct: 436 LSLAKVNVEHAKYQNINDIVYNLYPLMQADAFNNNKEVRLN-LNETENILLDTNEIKQLI 494
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
N++ L T GG V I + PA L VI DDGP + Q TPF
Sbjct: 495 LNIVRNGLEATHTGGSVTISTLQEPAKVVL-VIRDDGPGIPLEIQKRVGTPF 545
>gi|387893363|ref|YP_006323660.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas
fluorescens A506]
gi|387160863|gb|AFJ56062.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas
fluorescens A506]
Length = 1385
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++ L D+ V H +Q ++ + L+V V+ + Q + NL+ AL T
Sbjct: 1086 QPIDLIRTLKDIHSVVLADGHRRQVSLQTPSVPGPLIVDVDPTRIEQVIWNLVNNALKFT 1145
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
G+V++V + + L VI D G + + FG +EN + +
Sbjct: 1146 PEDGQVQLVVSRSDGRAQLDVI-DSGAGLAQESLEEIFDLFGQ---AENQHQTHQREGLG 1201
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL++ R+L+E++G V V S LG G T +WLP
Sbjct: 1202 IGLSLVRQLVEAHGGSVSVHS-----RGLGFGCT-FSIWLP 1236
>gi|16329896|ref|NP_440624.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|383321639|ref|YP_005382492.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|383324808|ref|YP_005385661.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|383490692|ref|YP_005408368.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|384435959|ref|YP_005650683.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803]
gi|451814055|ref|YP_007450507.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|1652382|dbj|BAA17304.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|339272991|dbj|BAK49478.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803]
gi|359270958|dbj|BAL28477.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|359274128|dbj|BAL31646.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|359277298|dbj|BAL34815.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|451780024|gb|AGF50993.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
Length = 434
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 272 KFSADQRLNAINICRSLAMAYVMDQKSMLL--------QQSSWQNNARMSNLVEQIRGPL 323
++ ++ + I +SLA+A ++DQ+ QQ W+ ++L+ Q+R PL
Sbjct: 133 QWHGEEMMQLEAIAKSLAVACLLDQQQDWYRQAWEEQNQQYQWERQ-HWADLLHQLRNPL 191
Query: 324 SSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
++++T SK+L S +VE I+ QG+ L+ LQ +
Sbjct: 192 TALKTFSKLLLKRWHGDNKSQQVVEGIVRQGEHLQELLQSFE 233
>gi|17547655|ref|NP_521057.1| transmembrane sensor kinase transcription regulator protein
[Ralstonia solanacearum GMI1000]
gi|17429959|emb|CAD16643.1| putative transmembrane sensor kinase transcription regulator
protein [Ralstonia solanacearum GMI1000]
Length = 500
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 264 AVLLTQA------EYALRETD------PVRVREGLAAIIARLQSTNRLTSQL-------- 303
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG+L +V PLA +Q+ + + S L+
Sbjct: 304 ----------LALARARHAGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLA 353
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
+L V+ LR+ALSNL+ A+ T GG++ V A + ALV +DD GP M+ +
Sbjct: 354 AALPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIKDSDAALVCVDDTGPGMNAVE 412
Query: 541 QMHSLTPF 548
+ H+ F
Sbjct: 413 RAHAFERF 420
>gi|225569041|ref|ZP_03778066.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM
15053]
gi|225161840|gb|EEG74459.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM
15053]
Length = 475
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 453 SDVLGDLFE-AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+V+ D+ A R + + QR + Q ++ ++ + Q L N+++ A+ TQ GG
Sbjct: 324 GEVIDDVINGAERHVIGLGQRDYHVVLPKQVIMAQMDGKMIMQVLVNILDNAVKHTQEGG 383
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
K+ I++A+ V I+DDGP + + F S L E+M + GL
Sbjct: 384 KI-ILTASFRRKRLYVSIEDDGPGIEEGMEEKIFDEFVS-LSGESM---DQKRGIGLGLA 438
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
+ R+++ ++G + W + + GG R WLP+
Sbjct: 439 ICRQVVSAHGGEI-----WAENRS--EGGARFTFWLPAE 470
>gi|421529569|ref|ZP_15976099.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S11]
gi|402213001|gb|EJT84368.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S11]
Length = 420
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V ++L + E R A M+Q QV L + + + E L +A N+I A+ T G
Sbjct: 272 DVVELLAQIVEDARFEAGMKQCQVCL-QAQGTFITHGHEELLYRAFENIIRNAVRYTAAG 330
Query: 511 GKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
+V + +A AP G L V + D GP + PF + D+ F G
Sbjct: 331 TEVLVEAALAPGGQWLQVSVSDHGPGVEPARLQRIFEPF-------DRGTDSNGDGFGLG 383
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
L +A+ + +G + T A SGG RV + LP P
Sbjct: 384 LAIAQRAVALHGGSI-------TALAAASGGLRVRIELPQANP 419
>gi|119718739|ref|YP_925704.1| ATPase domain-containing protein [Nocardioides sp. JS614]
gi|119539400|gb|ABL84017.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
Length = 471
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 40/186 (21%)
Query: 452 VSDVLGDLFEAVR--PLAHMQQ-------------------RQVELSELSQSLLVAVEEP 490
++ ++GDL E R PL H+ + V +++ V E
Sbjct: 299 MTTLIGDLMELARDEPLTHVVEPVDVPELVDRAIARVRRRAAGVTFDVVAEPWFVVGESA 358
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
L +A++NL++ A + GG V + A ++ +DDDGP + H F
Sbjct: 359 GLERAVTNLLDNAAKWSPAGGTVRVRLAG-----GVLTVDDDGPGISEEDLPHVFDRFYR 413
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-S 609
S +M + GL++ R++ E + V W A +GG R+ LWLP S
Sbjct: 414 SQESRSMPGSGL------GLSIVRQVAERHSGTV-----WA--GAAPTGGARLTLWLPGS 460
Query: 610 PAPLSD 615
AP+ D
Sbjct: 461 RAPVPD 466
>gi|326319275|ref|YP_004236947.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323376111|gb|ADX48380.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 461
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS------- 482
+E P ALA + Q+ +R +V + L L A R H + +V+L+EL++S
Sbjct: 270 LEGPAQAEALARIGQDALRAGHVLNQLLALARASRTRLHELEAEVDLAELARSVAADYAQ 329
Query: 483 --------LLVAVEEPA--------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
L VA + P L A+ NL+E AL T G +VEI + +A G A
Sbjct: 330 AAWQHGSALGVAADGPVAVRGNAVLLEMAVRNLVENALRHTPAGTRVEIQAGSAVGGGAW 389
Query: 527 VVIDDDG 533
+ + DDG
Sbjct: 390 LQVCDDG 396
>gi|384262728|ref|YP_005417915.1| Sensor protein [Rhodospirillum photometricum DSM 122]
gi|378403829|emb|CCG08945.1| Sensor protein [Rhodospirillum photometricum DSM 122]
Length = 608
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 11/167 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P N+++V+ +R A + QV+ L + V +E A+RQ + NL+ A+ T
Sbjct: 443 QPVNIAEVIAACERMLRGRAREKNLQVDTLFLDEQSWVRADERAIRQIILNLLSNAVKFT 502
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
Q GG++ + G ++++ D G + L PF ++ +
Sbjct: 503 QEGGQITVTVGQEANGGLVLMVADTGIGIPPEHLDLVLRPFHQVDAADTRRHEGTGL--- 559
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 614
GL +A+ L+E +G +R+ D+ +G GTRV + LP+ LS
Sbjct: 560 -GLPLAKALVEKHGGTLRL------DSKVGQ-GTRVMISLPTERVLS 598
>gi|444912485|ref|ZP_21232647.1| hypothetical protein D187_04583 [Cystobacter fuscus DSM 2262]
gi|444716919|gb|ELW57758.1| hypothetical protein D187_04583 [Cystobacter fuscus DSM 2262]
Length = 786
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
PLA + +E+ L ++ LV + +RQ +SNL+ A+ T GGKVE V G
Sbjct: 505 PLARQKGLTLEMV-LQETPLVQADPRRMRQVVSNLLSNAVKFTPPGGKVE-VRLEPERGG 562
Query: 525 ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
+V+ D G Q +PF E E N GL + R+L+E G V
Sbjct: 563 VCIVVQDTGRGFPSEFQPLLFSPFRQE--EEGTTRANGGLGL--GLAIVRQLVELQGGTV 618
Query: 585 RVISPWKTDAALGSGGTRVELWLPS 609
SP + AL +WLP+
Sbjct: 619 WAESPGRGQGAL------FTVWLPA 637
>gi|445495722|ref|ZP_21462766.1| two-component system sensor histidine kinase [Janthinobacterium sp.
HH01]
gi|444791883|gb|ELX13430.1| two-component system sensor histidine kinase [Janthinobacterium sp.
HH01]
Length = 462
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 39/233 (16%)
Query: 398 RSQLSN----NFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453
RSQL+ +FS K +N ++ + ++MP P L RP V
Sbjct: 255 RSQLAERDGEDFSTAIVAVKRRNVSLGEFIERFTRVVKMPAPEL----------RPNAVR 304
Query: 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG--- 510
D++ D+ R + ++ +A++ + QAL N+++ A+ + G
Sbjct: 305 DIMDDILYLYREPCRSRGIRLAWQRCDDVPAIAMDRHLMEQALLNVVKNAMEAVEAGHAD 364
Query: 511 ----GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+E V A G L VID G + + TPF F+ +
Sbjct: 365 GAGEKAIEFVLEAEADGVRLSVIDS-GNLLGEVPARQLFTPF----FTTKKGGQGI---- 415
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGK 619
GL RE+L +G R+ AA G G TR ++WLP+ SD+ +
Sbjct: 416 --GLLFVREVLNRHGYTYRL-------AATGQGTTRFDIWLPNSGVKSDIRTR 459
>gi|162456778|ref|YP_001619145.1| hypothetical protein sce8495 [Sorangium cellulosum So ce56]
gi|161167360|emb|CAN98665.1| unnamed protein product [Sorangium cellulosum So ce56]
Length = 919
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V+ V+ E+VRPL + + LS + + + V + L Q + NL+ A+ T G
Sbjct: 621 DVASVVMAAVESVRPLLVQRGHDLVLS-VDRGVFVHGDRVRLEQVVVNLLNNAIKYTNPG 679
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
G+V + + AA AGDA + + D G + PF D GL
Sbjct: 680 GRVSL-ACAAIAGDARIRVTDTGVGISAELLPRVFEPF----MQARRTLDRSQGGLGIGL 734
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
T+ + L E +G V +S + GT + +WLP
Sbjct: 735 TLVKRLGELHGGRVEALSGGPGE------GTAISVWLP 766
>gi|167625908|ref|YP_001676202.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
gi|167355930|gb|ABZ78543.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
Length = 885
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAG--DALVVIDDDGPDMHYMTQ 541
L++++E +RQ L NL+ A+ T GG ++S + A D L+ I D G + Q
Sbjct: 491 LISLDEHRMRQVLVNLLSNAVKFTHEGGVKVVISCSNTADYCDLLISIHDSGIGIAKEKQ 550
Query: 542 MHSLTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVIS 588
H +PF E +D T F GL + ++L+ G + +IS
Sbjct: 551 QHIFSPFTQE-------DDTTTREFGGTGLGLAICKQLITLMGGEISLIS 593
>gi|284929408|ref|YP_003421930.1| signal transduction histidine kinase [cyanobacterium UCYN-A]
gi|284809852|gb|ADB95549.1| signal transduction histidine kinase [cyanobacterium UCYN-A]
Length = 439
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQ-----KSMLLQQS--SWQNNARMSNLVEQIRGPL 323
Y + D+ I +LA+A +D+ K L QQ Q R+ NL Q+R PL
Sbjct: 134 YPWKQDELAQIKKIANTLAIARSLDKRQAFSKKQLHQQKLLHKQEYDRLENLFHQLRNPL 193
Query: 324 SSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
++++ K+L + E S+ +V++I+ +G+ L +QE +
Sbjct: 194 TALKIFGKLLLKRLVSDEQSFAVVKNIVREGEHLEDLIQEFE 235
>gi|410457320|ref|ZP_11311134.1| integral membrane sensor signal transduction histidine kinase
[Bacillus bataviensis LMG 21833]
gi|409925356|gb|EKN62572.1| integral membrane sensor signal transduction histidine kinase
[Bacillus bataviensis LMG 21833]
Length = 457
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
VL L+E P+ + +++ E Q + ++ L Q LSN++ AL T G V
Sbjct: 312 VLAALWEMFSPIFKEKGVGLQIKEPDQEEMFEADKDRLMQVLSNILNNALKYTPEGKNVT 371
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAR 574
I G +I D+G M H F + + D T GL++ +
Sbjct: 372 ISVVTEKDGYVGFMIQDEGSGMKEEDIPHIFERF----YRGDKSRDRKTGGVGIGLSIVK 427
Query: 575 ELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
L++++ V++V S + GT + LW P
Sbjct: 428 ALMDAHKGVIKVKSRL-------NKGTSITLWFP 454
>gi|334341286|ref|YP_004546266.1| ATP-binding protein [Desulfotomaculum ruminis DSM 2154]
gi|334092640|gb|AEG60980.1| ATP-binding region ATPase domain protein [Desulfotomaculum ruminis
DSM 2154]
Length = 1033
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 27/225 (12%)
Query: 377 RYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP 436
R+ +E L K ++ + + + + + + SG+ LSL K+I +
Sbjct: 431 RFKDEFLAKTSHEFRTPLHGVMTLVQSMLTSPASGSLTPEQTNKLSL---VKEISKRLAF 487
Query: 437 LA-----LAPLKQN--GIRPCNV-----SDVLGDLFEAVRPLAHMQQRQVELSELSQSL- 483
L L+ LKQ IRP NV S ++ ++F V P HM R +++S +
Sbjct: 488 LVEDIADLSKLKQGQLKIRPQNVDLHTISHLVTEVFAHVLP-GHMTLR----NQVSPHIP 542
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
V +E LRQ L+NLI+ A GG++E+ SA AG +V + D GP +
Sbjct: 543 YVRADENRLRQILNNLIDNAAKHAGAGGEIEL-SAQEQAGFVVVSVKDAGPGIAPEELEK 601
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
P + + + GL +AR+L+E G + V S
Sbjct: 602 VFEP-----YQQGAIPSQRPGGVGLGLAIARQLVELQGGRIWVQS 641
>gi|358461192|ref|ZP_09171361.1| integral membrane sensor signal transduction histidine kinase
[Frankia sp. CN3]
gi|357073856|gb|EHI83353.1| integral membrane sensor signal transduction histidine kinase
[Frankia sp. CN3]
Length = 592
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
GI VSD+ + EA+ L H +L + L V + AL Q ++NL++ AL
Sbjct: 329 TGIDDNTVSDLPEVVREALGSLRHASMAGAVAVDLPEHLPVRMSRQALHQVVANLVDNAL 388
Query: 505 MRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
+ + G V ++ A GD +V+ + + GPD+ T PF S D
Sbjct: 389 VHSWPGTPVRLI--AGRVGDEVVLRVRNQGPDLDKETIHRLFEPFTQRDGSATRPTDGAG 446
Query: 564 WNFVAGLTVARELLESYGCVVRVIS 588
GL V R L+E +G +R+ +
Sbjct: 447 ----MGLYVVRRLVEVHGGRLRMTA 467
>gi|126470035|dbj|BAF48120.1| hypothetical protein [Rhodococcus rhodochrous]
Length = 381
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ L S V V+ L Q L NL++ AL T GG V + S + G A ++I D G +
Sbjct: 256 ARLEDSAAVTVDPDRLGQVLGNLLDNALRHTPAGGAVTVTSRSGEHGHAQIIIADTGDGL 315
Query: 537 HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
+ H F + + D GLT+AR L+ ++G + S
Sbjct: 316 AHDELDHLFDRF----YRVDTARDRGHGGSGIGLTIARALVTAHGGRISAYS 363
>gi|338739930|ref|YP_004676892.1| two-component sensor histidine kinase [Hyphomicrobium sp. MC1]
gi|337760493|emb|CCB66326.1| putative two-component sensor histidine kinase [Hyphomicrobium sp.
MC1]
Length = 462
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
VEL +L + +E ALR+ +NLI+ AL + G K V+A A G V+IDDDG
Sbjct: 327 VELELPGNTLTLMGDEVALRRLFTNLIDNAL---RYGAKAPKVTAGAIGGRVRVLIDDDG 383
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY-GCVVRVISPWKT 592
P + + PF + T GL +A++++E + G + SP
Sbjct: 384 PGIPVAERALVFEPF----YRREPSRSRETGGSGLGLAIAKQIVELHNGSITLGDSP--- 436
Query: 593 DAALGSGGTRVELWLP 608
GG RV + LP
Sbjct: 437 -----RGGLRVIVELP 447
>gi|88703723|ref|ZP_01101439.1| Heavy metal sensor kinase [Congregibacter litoralis KT71]
gi|88702437|gb|EAQ99540.1| Heavy metal sensor kinase [Congregibacter litoralis KT71]
Length = 467
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ + +LF+ LA +++Q+EL ++ ++ + LR+ALSNL+ AL T
Sbjct: 302 PLDLAREVRELFDFFEALA--EEKQIELVSEGKTPIIQGDRAMLRRALSNLLSNALRHTS 359
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG+V + A + G AL+ + + GP +
Sbjct: 360 EGGRVLVGLALSGEGGALLSVQNPGPKI 387
>gi|56962304|ref|YP_174029.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
gi|56908541|dbj|BAD63068.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
Length = 439
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIE 501
+Q +RP ++ D+ + +RPLA QQ+ + +S + ++ ++ + L +AL+NL +
Sbjct: 284 QQKNVRPIDLKDLFQQTIDGLRPLA--QQKHISISTDFEENCMIRGDSHLLERALNNLFD 341
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
A+ T G + +V + + D GP P LF + +
Sbjct: 342 NAIRHTPSSGNI-VVRCYKEDANVTFSLKDTGPGFSSEELERVFEP----LFRGEVSRNR 396
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
T GLT+++ +++ +G + + GG + WLP
Sbjct: 397 STGGSGLGLTISQRIIKQHGGELAAKNHL-------DGGAFISGWLPG 437
>gi|33599011|ref|NP_886571.1| two-component sensor protein [Bordetella bronchiseptica RB50]
gi|412340680|ref|YP_006969435.1| two-component sensor protein [Bordetella bronchiseptica 253]
gi|33575057|emb|CAE30520.1| probable two-component sensor protein [Bordetella bronchiseptica
RB50]
gi|408770514|emb|CCJ55308.1| probable two-component sensor protein [Bordetella bronchiseptica
253]
Length = 781
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 16/257 (6%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
++E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IAEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ Q+ PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---PSG 762
Query: 596 LGSGGTRVELWLPSPAP 612
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|427812271|ref|ZP_18979335.1| probable two-component sensor protein [Bordetella bronchiseptica
1289]
gi|410563271|emb|CCN20805.1| probable two-component sensor protein [Bordetella bronchiseptica
1289]
Length = 781
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 16/257 (6%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
++E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IAEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ Q+ PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---PSG 762
Query: 596 LGSGGTRVELWLPSPAP 612
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|427735327|ref|YP_007054871.1| histidine kinase [Rivularia sp. PCC 7116]
gi|427370368|gb|AFY54324.1| histidine kinase [Rivularia sp. PCC 7116]
Length = 459
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALS 497
L P KQ PC + ++ DL E LA+ Q+E S LS Q L V +E L + LS
Sbjct: 296 LIPTKQ----PCCLDILIEDLIEEFSALANASSLQLEYSILSHQPLYVMGDEDQLLRLLS 351
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
NLI A+ T GG + ++ GDA++ + D G
Sbjct: 352 NLIANAIQYTPAGGNINLI-LKKNNGDAVIEVIDTG 386
>gi|427823058|ref|ZP_18990120.1| probable two-component sensor protein [Bordetella bronchiseptica
Bbr77]
gi|410588323|emb|CCN03380.1| probable two-component sensor protein [Bordetella bronchiseptica
Bbr77]
Length = 781
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+ E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IDEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ Q+ PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---SSG 762
Query: 596 LGSGGTRVELWLPSPAP 612
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|399909523|ref|ZP_10778075.1| integral membrane sensor signal transduction histidine kinase
[Halomonas sp. KM-1]
Length = 451
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDD 532
+E S Q+ + + AL QA+ N+I A + T GG V + P GD + IDD+
Sbjct: 322 IESSLPDQAEISGSSQRALAQAIENVIRNACLYTPGGGHVRVT--LQPDGDGYRLTIDDE 379
Query: 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 592
GP + TPF + D+ GL +AR +E+ G +R
Sbjct: 380 GPGVADDQLELIFTPF----YRTVQARDDRPDGHGLGLALARRQIEAAGGWIRA------ 429
Query: 593 DAALGSGGTRVELWLP 608
A GG R+ LW P
Sbjct: 430 -ANRSGGGLRMTLWFP 444
>gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1041
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 415 QNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR----PCNVSDVLGDLFEAVRPLAHMQ 470
Q C + +E+ L LA +++N I P +V +V+ + V P+A+
Sbjct: 707 QRECTREIIQAGGHLLELINDVLDLAKIEENRISLKMAPVHVQEVIREAVALVTPMAN-- 764
Query: 471 QRQVELSE-----LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525
++ + L + + V + L+Q L NL + + GG+VEI A AG A
Sbjct: 765 RKGIRLYHGMGEGVCERCDVQADRTRLKQILINLATNGVKYNREGGEVEISCRLAEAGRA 824
Query: 526 LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
+ + D G + + Q PF +VED GL++ + L+E+ G
Sbjct: 825 RIEVRDTGIGIAALKQGDIFEPF------HRLVEDGTIEGTGIGLSIVKRLVEAMG 874
>gi|119962088|ref|YP_948935.1| two-component sensor histidine kinase [Arthrobacter aurescens TC1]
gi|403528408|ref|YP_006663295.1| sensor histidine kinase ResE [Arthrobacter sp. Rue61a]
gi|119948947|gb|ABM07858.1| putative two-component sensor histidine kinase domains protein
[Arthrobacter aurescens TC1]
gi|403230835|gb|AFR30257.1| sensor histidine kinase ResE [Arthrobacter sp. Rue61a]
Length = 547
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++P ++ +L + +RPLA + V +E ++ + V +E L Q +N++ A+
Sbjct: 389 LKPVDIDKLLQVVVATLRPLAESRHVSVSFTEATEDIEVTADEAKLEQVFTNIVANAIKF 448
Query: 507 TQVGGKVEIVSAAAPAGD----ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
T GG V I SA + + ALV I D+G + H LT F + +
Sbjct: 449 TPEGGSVGITSAMSATENGRLSALVRIADNGLGIPEHDLPHILTRF----YRASNATSAA 504
Query: 563 TWNFVAGLTVARELLESY-GCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
GL +A +++ + G +V D+ LGS GT V + LP P
Sbjct: 505 VPGSGLGLAIANDIIGRHMGRMV-------FDSTLGS-GTTVSVELPVGGP 547
>gi|428311772|ref|YP_007122749.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253384|gb|AFZ19343.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 1280
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEG 502
Q RPCN+ + + EA RP + ++ + LS +L++ V V+ + L NL+
Sbjct: 710 QASFRPCNLVQFVSQIVEAFRP--YCDKKNIRLSTQLTRCTSVYVDLEKFDKVLYNLLSN 767
Query: 503 ALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
A+ T+ GG + I AGD + + I D G + P E F + N
Sbjct: 768 AMKFTEAGGNITI--KVESAGDHVRLQISDTGIGIK-----KEQVPHLFERFRQAEGSVN 820
Query: 562 MTWNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
++ GL + +EL+E +G + V S + S GT +WL
Sbjct: 821 RSYEGSGLGLALVKELVELHGGQISVESVY-------SEGTTFTVWL 860
>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357046222|ref|ZP_09107852.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella clara YIT 11840]
gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355531228|gb|EHH00631.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella clara YIT 11840]
Length = 1299
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV 487
+ IEM LAL N+ D+L ++E+ P++ + + + ++ LV
Sbjct: 855 RRIEMKGETLALETF--------NLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLVTA 906
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD---ALVVIDDDGPDMHYMTQMHS 544
+ P + + ++NL+ A T GG V + + P+ A++ ++DDG + Q H
Sbjct: 907 DSPKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPTEEQTHI 966
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
E F + T + + GL VA+E ++ + + V S
Sbjct: 967 F-----ERFHQASSHKGNTGSGI-GLNVAKEYVQMHHGKINVSS 1004
>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
Nitrospira defluvii]
Length = 949
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
++ D+ E + PLA + +EL LLV ++ L Q L+NL++ A+ T GG+V
Sbjct: 662 LVSDVVEQLLPLAITKHLNIELQSPDPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVA 721
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAR 574
+ + A +VI D+G + PF F E + T GL + +
Sbjct: 722 VELSVDTHDMARIVIRDNGQGIPSDALPKLFDPF----FRVQQEERSQTKGLGLGLAIVK 777
Query: 575 ELLESYGCVVRVIS 588
+L++ +G + V S
Sbjct: 778 DLVDLHGGSITVRS 791
>gi|358636356|dbj|BAL23653.1| sensory box sensor histidine kinase [Azoarcus sp. KH32C]
Length = 388
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS---ELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+ D++G+L + PLA + RQ+ S E + L+ + AL AL+NL+E A+ T
Sbjct: 234 GICDLVGELVHTLEPLA--RARQIVFSSTCECGDTALLG-DRKALGGALTNLLENAIQAT 290
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
+ GG V + +AA A I D+G + Q PF F+ +
Sbjct: 291 EAGGAVSL-TAAVEGETAHFRIRDNGRGIESAHQARLFDPF----FTTRAEGTGL----- 340
Query: 568 AGLTVARELLESYGCVVRV-ISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSN 621
GL +AR + +G + V SP G+ L LP P D+ GK +
Sbjct: 341 -GLAIARGVARGHGGDIAVESSPGN--------GSLFTLSLPLPEADEDVTGKDS 386
>gi|423691099|ref|ZP_17665619.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas
fluorescens SS101]
gi|388001622|gb|EIK62951.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas
fluorescens SS101]
Length = 1381
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++ L D+ V H +Q ++ + L+V V+ + Q + NL+ AL T
Sbjct: 1086 QPIDLIRTLKDIHSVVLADGHRRQVSLQTPSVPGPLIVDVDPTRIEQVIWNLVNNALKFT 1145
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
G+V++V + L VI D G + + FG +EN + +
Sbjct: 1146 PEDGQVQLVVSRTDGRAQLDVI-DSGAGLAADSLEKIFDLFGQ---AENQHQTHQREGLG 1201
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL++ R+L+E++G V V S LG G T +WLP
Sbjct: 1202 IGLSLVRQLVEAHGGSVSVQS-----RGLGFGCT-FSIWLP 1236
>gi|108762872|ref|YP_634150.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
gi|108466752|gb|ABF91937.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
Length = 548
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 46/195 (23%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSEL-------------SQSLL 484
A+ L++ IR + D++ DL + VRPL + R V+L EL + +L
Sbjct: 367 AVGMLEEEAIR---LEDIVRDLLDVVRPL-EPRPRPVQLGELVRRALGQMHGPPDAPTLR 422
Query: 485 VAVEEPA-----------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+V+E A L+ A+++L+ A+ + GGKV + A G LVV +D+G
Sbjct: 423 FSVDEAAETPPLEGDETLLQLAVTHLVRNAVQASPAGGKVRMTVEPADGGVRLVV-EDEG 481
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 593
P + + PF F + GL + R ++ ++ VR S +
Sbjct: 482 PGIPDVDPQRVFQPF----FLTRANGRGL------GLAIVRRVVLAHEGSVRASSRTR-- 529
Query: 594 AALGSGGTRVELWLP 608
GG R ELWLP
Sbjct: 530 -----GGARFELWLP 539
>gi|424892203|ref|ZP_18315783.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|424893569|ref|ZP_18317149.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393183484|gb|EJC83521.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393184850|gb|EJC84887.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 468
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 458 DLFEAVRPL--AHMQQ---RQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
DL +A R + AH ++ R ++L E+S+ + V + LR+ L NLI+ A+ T+ G
Sbjct: 323 DLSKAAREILEAHAEEALRRNIDLGLEVSRPVFVEGDGTMLREMLVNLIDNAIRYTRADG 382
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF----GSELFSENMVEDNMTWNFV 567
+V + A G A++ ++D+GP + + F G+E +
Sbjct: 383 RVTVAVGQAD-GRAVITVEDNGPGIPEGEREQVFERFYRIMGTEAEGSGL---------- 431
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL + RE+ E G V + DA GG V +WLP
Sbjct: 432 -GLAIVREVAEGAGGSVSL-----EDA--NGGGLVVTVWLP 464
>gi|392542046|ref|ZP_10289183.1| integral membrane sensor signal transduction histidine kinase
[Pseudoalteromonas piscicida JCM 20779]
Length = 171
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
++ ++ + QAL NLIE A+ + G +VEI S L+ I D+GP + Q
Sbjct: 56 ILTIQAALIEQALFNLIENAVTFSPDGERVEI-SLGETQQALLIFIQDNGPGIPVARQKE 114
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 587
T F S F +++ +D + GL+VAR ++ ++G +R++
Sbjct: 115 VFTAFSS--FRQSVSKDGGSG---LGLSVARGIIRAHGGDIRIL 153
>gi|148547608|ref|YP_001267710.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|395449665|ref|YP_006389918.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
gi|397694775|ref|YP_006532656.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
gi|148511666|gb|ABQ78526.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|388563662|gb|AFK72803.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
gi|397331505|gb|AFO47864.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
Length = 420
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGA 503
N +V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A
Sbjct: 267 NDFASVDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNA 324
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
+ T+ G V + +A AP G L V + D GP + PF S +
Sbjct: 325 VRYTKPGTAVLVEAAPAPGGQWLQVCVSDHGPGVDPARLQRIFEPFDRGTDSSD------ 378
Query: 563 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
F GL +A+ + +G + T A +GG RV + LP
Sbjct: 379 --GFGLGLAIAQRAIALHGGSI-------TALAAATGGLRVRIELP 415
>gi|358637111|dbj|BAL24408.1| hypothetical protein AZKH_2095 [Azoarcus sp. KH32C]
Length = 702
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGK 512
SD++ D V PLA + ++E S Q L V + L+Q + NL+ A+ + GG
Sbjct: 524 SDLIADCIGMVSPLAQRNEVKIE-SSGDQGLAVEADHQFLKQIVLNLLSNAIKYNRQGGL 582
Query: 513 VEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTV 572
V + S G +++ D G + Q PF +E + GL V
Sbjct: 583 VRVHSELDANGHLRIMVSDTGQGIAPEQQAQLFEPFNRLGAQNGSIEGSGI-----GLVV 637
Query: 573 ARELLESYGCVVRVIS 588
+ L+E+ G + V+S
Sbjct: 638 CKRLVEAMGGDIHVVS 653
>gi|434393275|ref|YP_007128222.1| adenylate/guanylate cyclase with GAF sensor(s) [Gloeocapsa sp. PCC
7428]
gi|428265116|gb|AFZ31062.1| adenylate/guanylate cyclase with GAF sensor(s) [Gloeocapsa sp. PCC
7428]
Length = 1124
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEG 502
Q RPC++ + + + E+ RP + +++++EL +E + LV ++ + + NL+
Sbjct: 555 QPSFRPCDLLEFVSQIVESFRP--YCEKKELELITEFNPCPLVYLDTEKFDKVVYNLLSN 612
Query: 503 ALMRTQVGGKVEIVSAAAPAGD-ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
A+ T GGK+ I AGD L+ ++D G + H F +E V +
Sbjct: 613 AMKFTPPGGKITI--RVETAGDHCLIQVEDTGIGIAKEQIPHLFKRFHQ---AEAAVNRS 667
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+ + GL +A+EL+E + + V S ++ G++ +WLP
Sbjct: 668 YEGSGL-GLALAKELIELHAGQISVESVYEK-------GSKFTVWLP 706
>gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
[Rhodospirillum centenum SW]
gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
[Rhodospirillum centenum SW]
Length = 894
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 22/149 (14%)
Query: 472 RQVELSELSQSLLVAVEEP-----------ALRQALSNLIEGALMRTQVGGKVEIVSAAA 520
R VE ++S+ V EEP A+RQ L NL+ A+ T GG+V +V
Sbjct: 750 RMVEDQARARSIAVVWEEPPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVVLGGH 809
Query: 521 PAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY 580
D + I D G + H PF F V T GL++ R L+E++
Sbjct: 810 DGEDLWLEISDTGIGIAEADMEHVFEPF----FRAGNVYTRSTEGTGLGLSIVRALMEAH 865
Query: 581 GCVVRVISPWKTDAALGSGGTRVELWLPS 609
G V + S + GT + + LPS
Sbjct: 866 GGRVSLRSRYGQ-------GTTLRITLPS 887
>gi|427817324|ref|ZP_18984387.1| probable two-component sensor protein [Bordetella bronchiseptica
D445]
gi|410568324|emb|CCN16357.1| probable two-component sensor protein [Bordetella bronchiseptica
D445]
Length = 781
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+ E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IDEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ Q+ PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---PSG 762
Query: 596 LGSGGTRVELWLPSPAP 612
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|410417834|ref|YP_006898283.1| two-component sensor protein [Bordetella bronchiseptica MO149]
gi|408445129|emb|CCJ56777.1| probable two-component sensor protein [Bordetella bronchiseptica
MO149]
Length = 781
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+ E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IDEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ Q+ PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---PSG 762
Query: 596 LGSGGTRVELWLPSPAP 612
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|312194914|ref|YP_004014975.1| integral membrane sensor signal transduction histidine kinase
[Frankia sp. EuI1c]
gi|311226250|gb|ADP79105.1| integral membrane sensor signal transduction histidine kinase
[Frankia sp. EuI1c]
Length = 577
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
GI VSD+ ++EA+ L + +L L V + AL Q ++NL++ AL
Sbjct: 328 TGIDDTTVSDLPEVVYEALGSLRNAALVNAVTVDLPDHLPVRMSREALHQVVANLVDNAL 387
Query: 505 MRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
+ + G V ++ A GD +V+ + + GPD+ T PF S D
Sbjct: 388 VHSWPGAPVRLI--AGRVGDEVVLRVRNPGPDLDKETIARLFEPFTQRDGSATRPTDGAG 445
Query: 564 WNFVAGLTVARELLESYGCVVRVIS 588
GL V R L+E +G +R+ S
Sbjct: 446 ----MGLYVVRRLVEVHGGRLRMTS 466
>gi|126732904|ref|ZP_01748694.1| probable two-component sensor kinase transcription regulator
protein [Sagittula stellata E-37]
gi|126706610|gb|EBA05685.1| probable two-component sensor kinase transcription regulator
protein [Sagittula stellata E-37]
Length = 523
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
LRQ L L+ A+ + GGKV IV+ AGD VI D+GP + Q S
Sbjct: 415 LRQVLVGLVRNAIRHARDGGKVRIVA----AGDTAAVI-DNGPGIPAEAQ--------SR 461
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 608
+F + F GL +A+ ++E+ G + V SP LG GT+V + LP
Sbjct: 462 IFDRFAQGRKDSAGFGLGLALAKWVIEAQGGEIAVTSPVPDGERLGRAPGTKVSVRLP 519
>gi|26990086|ref|NP_745511.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida KT2440]
gi|24985015|gb|AAN68975.1|AE016529_6 sensor histidine kinase [Pseudomonas putida KT2440]
Length = 419
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQ 508
+V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A+ T+
Sbjct: 271 VDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNAVRYTK 328
Query: 509 VGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
G V + +A AP G L V + D GP + PF S + F
Sbjct: 329 PGTAVLVEAAPAPGGQWLQVCVSDHGPGVDPARLQRIFEPFDRGTDSSD--------GFG 380
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL +A+ + +G + T A +GG RV + LP
Sbjct: 381 LGLAIAQRAIALHGGSI-------TALAAATGGLRVRIELP 414
>gi|110597378|ref|ZP_01385665.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
gi|110340922|gb|EAT59393.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
Length = 372
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
++PC V D L + V A +Q ++L + +++V + LRQA N+I AL
Sbjct: 217 AMKPCRVQDELETIVTLVMNDARKRQVALQLQPNAVAMIVMADSEKLRQAFLNIIINALQ 276
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
T GG+V I + A + D GP + PF F+ +
Sbjct: 277 ATPEGGRVTISTTIAEHAFCEIRFRDSGPGVEKAAMERIFEPF----FTTKSDGTGL--- 329
Query: 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL + + ++E++ ++V +++AA GT V + LP
Sbjct: 330 ---GLAITKNIIENHKGTLKV----ESEAA---NGTTVTIRLP 362
>gi|421520959|ref|ZP_15967619.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
gi|402755236|gb|EJX15710.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
Length = 420
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQ 508
+V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A+ T+
Sbjct: 272 VDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNAVRYTK 329
Query: 509 VGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
G V + +A AP G L V + D GP + PF S + F
Sbjct: 330 PGTAVLVEAAPAPGGQWLQVCVSDHGPGVDPARLQRIFEPFDRGTDSSD--------GFG 381
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL +A+ + +G + T A +GG RV + LP
Sbjct: 382 LGLAIAQRAIALHGGSI-------TALAAATGGLRVRIELP 415
>gi|392382608|ref|YP_005031805.1| two-component sensor histidine kinase [Azospirillum brasilense
Sp245]
gi|356877573|emb|CCC98415.1| two-component sensor histidine kinase [Azospirillum brasilense
Sp245]
Length = 587
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P V+ +LG+ E V LA + +++ S + L V + LRQA+ NL+ A+ T
Sbjct: 419 PVRVAVLLGECVELVEALAGQKGVRMDCSPIEPGLTVMADAMRLRQAVLNLLSNAIKFTP 478
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG+V + +A G + + D G M +L PF V MT
Sbjct: 479 AGGRVRVDAARGGDGCVSLTVADTGIGMSSEDIKIALEPF-------RQVNSYMTKAHSG 531
Query: 569 ---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-SPAP 612
GL +A+ +E++G + T +++ GT V + LP +P+P
Sbjct: 532 TGLGLPLAKRFVEAHGGRL-------TLSSVPGEGTVVNIVLPGTPSP 572
>gi|337278687|ref|YP_004618158.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729763|gb|AEG92139.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis
TTB310]
Length = 551
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V D + E+ RPL +++S + L V + L Q + NLI A T G
Sbjct: 250 DVRDAVETALESCRPLIEASGHGLQVSLSPEPLCVEADRTRLSQVIGNLINNAAKYTPEG 309
Query: 511 GKVEIVSAAAPAGDALVVIDDDG----PDMHYMTQMHSLTPFGSELFS-ENMVEDNMTWN 565
G++E+ +A++ G +V + D+G PDM P ++FS E+
Sbjct: 310 GRIEL-AASSRDGQVVVSVSDNGAGIAPDM---------LPKVFDMFSQESRNLQRAQGG 359
Query: 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNG 618
GL + ++L+E +G V S A LG G T L LP+ A +L G
Sbjct: 360 LGIGLALVKQLVEMHGGTVVAHS-----AGLGHGST-FTLALPAAATGVELAG 406
>gi|365128008|ref|ZP_09340356.1| hypothetical protein HMPREF1032_02120 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363623587|gb|EHL74698.1| hypothetical protein HMPREF1032_02120 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 411
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S ++ D+ E A + + + LS + ++++ + + +A+ N+++ AL T+
Sbjct: 262 PENLSVLMQDVLERFETWAEGEHKTITLSG-KEDVVLSCDALWVSEAIGNIVKNALEHTE 320
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG +E+ + +P + I DDG +H + F FS ++ +
Sbjct: 321 NGGHIEVKWSQSPLMTQ-IEISDDGKGIHPEDLYNIFKRFYRSRFSSDVHGIGL------ 373
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
GL +A+ ++E++G + V S +LG+G T
Sbjct: 374 GLPLAKSIVEAHGGTISVTS------SLGAGTT 400
>gi|393777102|ref|ZP_10365395.1| signal transduction histidine kinase [Ralstonia sp. PBA]
gi|392715803|gb|EIZ03384.1| signal transduction histidine kinase [Ralstonia sp. PBA]
Length = 533
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
LR+ALSNL++ A+ VGGKV + + A++VI+D+GP + + + + T F
Sbjct: 408 LREALSNLLDNAIKYVPVGGKVTVRAGYTDTVQAMIVIEDNGPGIPHAQRSQAFTRF 464
>gi|22297739|ref|NP_680986.1| two-component sensor histidine kinase [Thermosynechococcus
elongatus BP-1]
gi|22293916|dbj|BAC07748.1| two-component sensor histidine kinase [Thermosynechococcus
elongatus BP-1]
Length = 385
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 118/316 (37%), Gaps = 75/316 (23%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQ----NNARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
+ ++LA+A V+DQ+ L S Q R +L+ Q+R P+++I+T K+L ++
Sbjct: 123 QVAQTLAIACVLDQRQQWLSHSPAQPLDQRQQRFDDLLHQLRNPVAAIRTFVKLLLKRLE 182
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIR 398
+ E I + +RL L++ +
Sbjct: 183 PDHKGRPLAEGIAKETERLMALLEDYR--------------------------------- 209
Query: 399 SQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
Q N+ L + KPL L ++ L
Sbjct: 210 -QQRNDIPALTGSQPLPLAGKPLDL-----------------------------AETLLP 239
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI-VS 517
L A + A M+ + + Q + +EE L++ + NL++ A T GG + + +
Sbjct: 240 LISAAQARAEMEGKTFVVEIPPQLPPIWLEERVLQEVVGNLLDNAFKYTPKGGTIGLRLM 299
Query: 518 AAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL 577
++PA + + + D G + Q P E + D+ GL +A++LL
Sbjct: 300 LSSPALE--LTVWDTGCGIPKEAQ-----PRLFERGYRGVQADSGIEGSGLGLAIAQDLL 352
Query: 578 ESYGCVVRVISPWKTD 593
YG +RV SP+ D
Sbjct: 353 RPYGLSLRVTSPYAGD 368
>gi|224000551|ref|XP_002289948.1| hypothetical protein THAPSDRAFT_262298 [Thalassiosira pseudonana
CCMP1335]
gi|220975156|gb|EED93485.1| hypothetical protein THAPSDRAFT_262298 [Thalassiosira pseudonana
CCMP1335]
Length = 286
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLS 330
+K++ + +L +SLA+A MD + Q S Q ++ + Q++ PL +++T
Sbjct: 4 WKWTRNDKLQVSRAAKSLALALSMDTERASTQIQSEQFRMAFADSLHQVKSPLQALRTFG 63
Query: 331 KMLSLHMKRSEISYDIVEDIMVQGDRL 357
K+L + + + ED++ QG+R+
Sbjct: 64 KLLQRQLAEENSALKLAEDMVKQGERV 90
>gi|344198886|ref|YP_004783212.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrivorans SS3]
gi|343774330|gb|AEM46886.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrivorans SS3]
Length = 494
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V++VL DL ++PL + + ++ + Q L V + LRQ L+NL+ A + G
Sbjct: 344 VAEVLVDLQNRMQPLTDKKNQTLDCNGAEQ-LSVYADPQRLRQILTNLVSNAHKYSPADG 402
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
++E+ + A G V D+GP + +L E F + V +++ GL
Sbjct: 403 RIEVRATAQQKGVHFSV-SDNGPGI-----PDALLERVFERFYQVPVSNSLPRGTGLGLA 456
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ REL+ + G +R+ + SGG E+WLP+
Sbjct: 457 ITRELVAAQGGWIRMHNR-------PSGGLCAEIWLPA 487
>gi|322434292|ref|YP_004216504.1| integral membrane sensor signal transduction histidine kinase
[Granulicella tundricola MP5ACTX9]
gi|321162019|gb|ADW67724.1| integral membrane sensor signal transduction histidine kinase
[Granulicella tundricola MP5ACTX9]
Length = 543
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA------PAGDALVVIDDDGPDMHY 538
V ++ LRQ NLI AL T GG++ + + A+ G VV+ D G M
Sbjct: 423 VNCQDGELRQVFINLISNALEATPAGGRLVVRTRASRDWARRGTGGVRVVVADSGCGMPD 482
Query: 539 MTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS 598
++ PF F+ M N GL VA++L+E G +RV S +G+
Sbjct: 483 AVRVKVFEPF----FTTKMETGNGL-----GLWVAKDLIEKLGGTIRVWS----STRVGA 529
Query: 599 GGTRVELWLP 608
GT ++LP
Sbjct: 530 SGTVFSVFLP 539
>gi|399887600|ref|ZP_10773477.1| integral membrane sensor signal transduction histidine kinase
[Clostridium arbusti SL206]
Length = 471
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 439 LAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQ 494
++ L+Q GI ++S + ++ + +P+ M+Q + +E+++ ++V +++ L+Q
Sbjct: 305 ISKLEQAGITLNKSKFDLSSEITNIVDTFKPI-FMKQNYLITTEITEKIIVYMDKDNLKQ 363
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-----PDMHYMTQMHSLTPFG 549
L NL+ A ++ G+V+ VS G ++ ++D+G D+ Y+ +
Sbjct: 364 ILYNLLSNANKYLEINGRVK-VSLFESRGYIVIEVEDNGIGISEKDLPYIFE-------- 414
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAAL 596
+ ++ D + GLT+ + L+E+ G ++V S A
Sbjct: 415 -RFYRSDISRDKNSGGSGLGLTITKSLVEANGGKIQVKSKIGEGTAF 460
>gi|58039170|ref|YP_191134.1| phosphate regulon sensor protein PhoR [Gluconobacter oxydans 621H]
gi|58001584|gb|AAW60478.1| Phosphate regulon sensor protein PhoR [Gluconobacter oxydans 621H]
Length = 404
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 25/170 (14%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL-MRTQV 509
+V+D++ + V P + R ++L E+ LLV +E + Q L NLIE AL Q
Sbjct: 236 DVADLMAVVLGEVAPRFEQEGRTLKL-EIENDLLVRADEDEMVQVLLNLIENALRYGAQE 294
Query: 510 GGKVEIV----SAAAP------AGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE 559
G + I AA+P G ++ I+D+G M + H L +
Sbjct: 295 GDPLTITLSARRAASPDDRWPADGGVILGIEDNGCGM----EAHHLPRLTERFYRVGAPT 350
Query: 560 DNMTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLP 608
D GL++ R +L+ +G +R+ S P K GT +WLP
Sbjct: 351 DGAGQGTGLGLSIVRHILDRHGGRLRIASAPGK--------GTTCLVWLP 392
>gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
Length = 288
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V V+ ++Q L NL+ A T GG++ +V+ P G + + D G M H+
Sbjct: 161 VPVDARRIKQVLINLLSNAHKFTGEGGRIVLVATQTPDGGVTIAVADTGIGMTKEQISHA 220
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRV 603
LTPFG S + GL +A L +G ++ S P K GT V
Sbjct: 221 LTPFGQVQASYARGHEGTGL----GLPIAAALTTLHGGEFQIFSEPGK--------GTTV 268
Query: 604 ELWLPSPAP 612
LP AP
Sbjct: 269 FFTLPPAAP 277
>gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 549
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ + E VR A + V L+ Q L+V + LRQ + NL+ A+ T
Sbjct: 396 PTPLALLITECLEIVRAKAESKNISVALAGPDQDLMVTTDSRRLRQIVLNLLSNAVKFTP 455
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG++ I+ A +G + ++D G M +LTPFG ++
Sbjct: 456 EGGRI-ILEAECDSGQLALTVNDTGIGMTQEEIAVALTPFGQN--DSDLARREAGTGL-- 510
Query: 569 GLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLPSPAPL 613
GL +++ L E G + V S P + GT V + LP PL
Sbjct: 511 GLPLSKRLTELLGGTLSVTSIPGR--------GTTVTISLPLSRPL 548
>gi|46581365|ref|YP_012173.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
gi|120601458|ref|YP_965858.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio vulgaris DP4]
gi|387154579|ref|YP_005703515.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio vulgaris RCH1]
gi|46450787|gb|AAS97433.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
gi|120561687|gb|ABM27431.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio vulgaris DP4]
gi|311235023|gb|ADP87877.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio vulgaris RCH1]
Length = 577
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 16/121 (13%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
L+Q N+I A Q GG V + + AA G V I D+G M Q H PF
Sbjct: 466 LQQVFLNIINNAFAAVQDGGSVTLTTFAADGGMVGVSIQDNGKGMSEEVQRHIFEPF--- 522
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611
T AG + + +YG + R+ ++ G GT V ++LP A
Sbjct: 523 ----------FTTKKTAGTGLG--MFITYGIIKRLGGEIGINSREGV-GTTVTVYLPQDA 569
Query: 612 P 612
P
Sbjct: 570 P 570
>gi|428216955|ref|YP_007101420.1| histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988737|gb|AFY68992.1| histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 369
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 455 VLGDLFEAVRPLA---HMQQRQVELSELSQSLL-------------------VAVEEPA- 491
++ D+ EA + L H+ RQ++L+ + + +L + ++ P
Sbjct: 195 MIRDILEAAKDLNGDFHVDLRQIDLAAICEDVLSDFSILSRLEAKEQKLHKDIPIDLPMA 254
Query: 492 ------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM-HYMTQMHS 544
++Q ++NLI A+ T VGGK+ +V+ + + I D+GP + M Q+
Sbjct: 255 YADADRIKQVVNNLISNAIKYTPVGGKISVVALHRTSQKIQITISDNGPGIPEEMQQL-- 312
Query: 545 LTPFGSELFSEN--MVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTR 602
+F +N + D+ + GL + + ++ S+ + V SP T G GG+
Sbjct: 313 -------IFEDNYRLERDDAKDGYGIGLALCQRIIRSHYGQIWVDSPIGT----GQGGSS 361
Query: 603 VELWLP 608
LP
Sbjct: 362 FHFTLP 367
>gi|114561671|ref|YP_749184.1| periplasmic sensor signal transduction histidine kinase [Shewanella
frigidimarina NCIMB 400]
gi|114332964|gb|ABI70346.1| periplasmic sensor signal transduction histidine kinase [Shewanella
frigidimarina NCIMB 400]
Length = 485
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++ N+S++L D+ + P A Q++ +++ + + + +R+ L+NL++ AL
Sbjct: 333 LQQVNLSELLSDIEQTFTPRAKKLGVQLDF-DINHASQIYTDPALMRRILNNLVDNALRY 391
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW-N 565
T GGK++IV+A G + + D G MH H + + E N +
Sbjct: 392 TPAGGKIQIVNAQHN-GQQWLTVRDTGAGMH----KHEVDALKQLSMTRLSFEANQSLPQ 446
Query: 566 FVAGLTVARELLESYGCVVRVIS 588
GL + R+LL C + + S
Sbjct: 447 LGVGLAIVRQLLGLLKCRIEIDS 469
>gi|338532892|ref|YP_004666226.1| sensor histidine kinase [Myxococcus fulvus HW-1]
gi|215433461|gb|ACJ66696.1| sensor histidine kinase [Myxococcus fulvus HW-1]
gi|337258988|gb|AEI65148.1| sensor histidine kinase [Myxococcus fulvus HW-1]
Length = 542
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 46/195 (23%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSEL-------------SQSLL 484
A+ L++ IR + D++ DL + VRPL + R V+L EL + +L
Sbjct: 361 AVGMLEEEAIR---LEDIVRDLLDVVRPL-EPRPRPVQLGELVRRALGQMHGPPDAPTLR 416
Query: 485 VAVEEPA-----------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+V+E A L+ A+++L+ A+ + GGKV + A G LVV +D+G
Sbjct: 417 FSVDEAAGTPALEGDETLLQLAVTHLVRNAVQASPAGGKVRMTVEPADGGVRLVV-EDEG 475
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 593
P + + PF F + GL + R ++ ++ VR S +
Sbjct: 476 PGIPDVDPQRVFQPF----FLTRANGRGL------GLAIVRRVVLAHEGSVRASSRPR-- 523
Query: 594 AALGSGGTRVELWLP 608
GG R ELWLP
Sbjct: 524 -----GGARFELWLP 533
>gi|223935939|ref|ZP_03627854.1| integral membrane sensor signal transduction histidine kinase
[bacterium Ellin514]
gi|223895540|gb|EEF61986.1| integral membrane sensor signal transduction histidine kinase
[bacterium Ellin514]
Length = 355
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
L LK+ +R +SD++ D +E + LA + Q+EL ++L++ + LRQ L
Sbjct: 197 GLITLKREKVR---LSDLVKDCYEDAQILAQSTKVQIELKSCDEALVLG-DRHRLRQLLL 252
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL + A+ Q G V I A AG+A + I + GP + +M L F +
Sbjct: 253 NLTDNAIKYNQENGSVAI-ELRAEAGEARLKISNTGPGI--FPEM--LPRVFDRFFRCDA 307
Query: 558 VEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
++ GL++A+ ++ ++G + +IS
Sbjct: 308 AHNSAVEGCGLGLSIAQWIVTAHGGRIEMIS 338
>gi|409200540|ref|ZP_11228743.1| integral membrane sensor signal transduction histidine kinase
[Pseudoalteromonas flavipulchra JG1]
Length = 344
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
++ ++ + QAL NLIE A+ + G +VEI S L+ I D+GP + Q
Sbjct: 229 ILTIQAALIEQALFNLIENAVTFSPDGERVEI-SFGETQQALLIFIQDNGPGIPVARQKE 287
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 587
T F S F ++ +D + GL+VAR ++ ++G +R++
Sbjct: 288 VFTAFSS--FRQSASKDGGSG---LGLSVARGIIRAHGGDIRIL 326
>gi|390948491|ref|YP_006412250.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
gi|390425060|gb|AFL72125.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
Length = 387
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 15/166 (9%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R ++ ++L D+ E R A R + S + ++ EP L +A N++ A+ T
Sbjct: 232 RSLDLVELLADIAEDARFEARSNGRDLHFSGSGERFVLGRAEP-LHRAFENVLRNAVKYT 290
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
G VE+ A +G V + D GP + PF + T F
Sbjct: 291 CPGSTVEVALDGADSGHVCVSVRDHGPGVLPRELETIFQPF------HRGHRNAATEGFG 344
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-SPAP 612
GL +AR ++S+ + P GG RVE+ LP P P
Sbjct: 345 LGLAIARRAIQSHQGTILASLP-------EDGGLRVEIRLPLQPQP 383
>gi|357391857|ref|YP_004906698.1| putative two-component system sensor kinase [Kitasatospora setae
KM-6054]
gi|311898334|dbj|BAJ30742.1| putative two-component system sensor kinase [Kitasatospora setae
KM-6054]
Length = 383
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 467 AHMQQRQVELS-ELSQSLLVAV-EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
A+ ++ V L E+ + L AV +E L Q ++NL++ A + GG V + + AA G
Sbjct: 242 AYARRGDVRLRVEVEPAGLAAVADEERLHQVVANLVDNACKHSPAGGTVTVRARAAEGGG 301
Query: 525 ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
L+ ++D GP + + FG S + GL +AR ++ +G +
Sbjct: 302 LLLEVEDQGPGIPAADRERVFERFGRS-GSPTALGPGSDGGTGLGLAIARWAVDLHGGRI 360
Query: 585 RVISPWKTDAALGSGGTRVELWLPSPAPL 613
RV + G R+E+ LP +P+
Sbjct: 361 RVAEE--------AAGCRIEVILPGESPV 381
>gi|398336909|ref|ZP_10521614.1| chemotaxis protein histidine kinase [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 726
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 456 LGDLFE----AVRPLAHMQQRQVEL------SELSQSLLVAVEEPA---LRQALSNLIEG 502
+ DLFE VR L+ +QVEL +EL +S++ + +P LR AL + IE
Sbjct: 399 IADLFEKYKRVVRDLSKELNKQVELEIIGGETELDRSVIEKIADPIVHILRNALDHGIET 458
Query: 503 ALMRTQVG----GKVEIVSAAAPAGDALVVIDDDGPDM 536
A R Q G GK++I A+ G L+VI DDG +
Sbjct: 459 AEERIQKGKPATGKLQI-QASHGTGSILIVIQDDGKGL 495
>gi|380512771|ref|ZP_09856178.1| sensory histidine kinase CreC [Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
LALA ++Q+G P ++ + DL EA+ P + Q+++ L +L+V+ + L
Sbjct: 315 LALAEVEQHGWLQRREPVALAPLCADLVEALAPQLQARGLQLQVQALDPTLVVSGDPYLL 374
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
RQAL NL++ A+ + G + + + L+V++D GP + Q F S
Sbjct: 375 RQALHNLLDNAIAFSPEGASIVLRAERGTDARVLLVVEDAGPGVPDYAQERVFERFYS 432
>gi|429767625|ref|ZP_19299815.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Brevundimonas diminuta 470-4]
gi|429189945|gb|EKY30758.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Brevundimonas diminuta 470-4]
Length = 536
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 29/183 (15%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNL 499
A L ++ R +++D+LGD+ + V L+ + + V + L Q NL
Sbjct: 365 AELSRDRPRAIDLNDLLGDIIGVYEAGRKPDEPAVRLTTATDNARVMGRDVPLGQVFRNL 424
Query: 500 IEGALMRTQVGGKVEIV---SAAAPAGDALVVIDDDGPDM----------HYMTQMHSLT 546
I+ A + GG+V + + P + IDDDGP + + T T
Sbjct: 425 IDNARSFSPAGGEVRVSLSRDDSQPDLPLRIRIDDDGPGIPADNLETVFERFYTSRPKGT 484
Query: 547 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 606
FG+ N GL++ R++++++G VR ++ D A+ G R E+
Sbjct: 485 AFGA--------------NSGLGLSIVRQIVDAHGGRVRAVNRKGEDGAV--LGARFEVS 528
Query: 607 LPS 609
LP+
Sbjct: 529 LPA 531
>gi|34498900|ref|NP_903115.1| two-component sensor [Chromobacterium violaceum ATCC 12472]
gi|34104749|gb|AAQ61106.1| probable two-component sensor [Chromobacterium violaceum ATCC
12472]
Length = 381
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541
++ V ++ AL+ AL NL+E AL GG+V + + A+ D + ++DDGP + +
Sbjct: 269 AITVLIDRKALQGALINLLENALQFASPGGRVGL-AVASDGADVVFCVEDDGPGIDEAVR 327
Query: 542 MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
PF F++ + GL + +++ E G VR + +GG
Sbjct: 328 ERIFEPF----FTQRPGGTGL------GLAIVKKVAEELGGSVRCYNKV-------AGGA 370
Query: 602 RVELWLPS 609
EL LP+
Sbjct: 371 CFELRLPT 378
>gi|67923216|ref|ZP_00516703.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
[Crocosphaera watsonii WH 8501]
gi|67854947|gb|EAM50219.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
[Crocosphaera watsonii WH 8501]
Length = 429
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQ-------NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ ++ + R+ +L Q+R PL++++ K+L
Sbjct: 145 IADTLAIACLLDQRGEWYERQLQRQQLKQQQERDRLDDLFHQVRNPLTALKVFGKLLLKR 204
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQ--DAVFLTKANIVRYNEETLKKMNNSAYSHP 394
+ E S IV++I+ +G+ L+ +++ + + + + ++ N E++ +N ++S P
Sbjct: 205 LGGDEQSSSIVKNIVQEGEHLQDLIKDFESYENSLINEEEVITLNTESVDISDNLSFSLP 264
Query: 395 ES 396
S
Sbjct: 265 AS 266
>gi|383774876|ref|YP_005453945.1| integral membrane sensor signal transduction histidine kinase
[Bradyrhizobium sp. S23321]
gi|381363003|dbj|BAL79833.1| integral membrane sensor signal transduction histidine kinase
[Bradyrhizobium sp. S23321]
Length = 449
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+ E ++ +V + ALR+ L+N+I+ AL G V A G +V IDD+G
Sbjct: 327 IDERVRNAVVLGDRLALRRILANIIDNALAY----GHAAHVRTALKDGAVVVSIDDEGAG 382
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ + L PF S N T GL V R L+E++G + + AA
Sbjct: 383 IPDDQRQAVLEPFLRLEKSRN----RATGGAGLGLAVVRSLVEAHGGTIGI-------AA 431
Query: 596 LGSGGTRVELWLP 608
GGTRV + LP
Sbjct: 432 ASGGGTRVNVTLP 444
>gi|392378162|ref|YP_004985321.1| putative two-component sensor histidine kinase (fragment), partial
[Azospirillum brasilense Sp245]
gi|356879643|emb|CCD00563.1| putative two-component sensor histidine kinase (fragment)
[Azospirillum brasilense Sp245]
Length = 245
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 486 AVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSL 545
A E L + L NL++ A+ G +VE+ S G VV++DDGP + + L
Sbjct: 135 AGEREDLDEMLGNLLDNAM--KWAGSRVEVASRLEAGGMLAVVVEDDGPGLPADRRDAVL 192
Query: 546 TPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 605
P G L D T GL V R++ YG +R+ D+ L GG RVEL
Sbjct: 193 AP-GVRL-------DESTPGSGLGLAVVRDVARLYGGDLRL-----GDSPL--GGLRVEL 237
Query: 606 WLPSPAP 612
LP+ AP
Sbjct: 238 VLPAAAP 244
>gi|254419144|ref|ZP_05032868.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Brevundimonas sp. BAL3]
gi|196185321|gb|EDX80297.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Brevundimonas sp. BAL3]
Length = 473
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LA+A L+ G +P + ++ D+ E P A + + ++ S E+ L++ +P L
Sbjct: 301 LAIARLQAGGAPDPKPMDAGELAADMAELYEPAA--EDKSIDFSSEVETGLMIEGNQPFL 358
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
QAL+NLI+ A+ T GG V++ + +G+ + D GP
Sbjct: 359 AQALANLIDNAIKYTPAGGAVKLRARRRSSGEIEYSVTDTGP 400
>gi|392379905|ref|YP_004987063.1| two-component sensor histidine kinase ChvG [Azospirillum brasilense
Sp245]
gi|356882272|emb|CCD03278.1| two-component sensor histidine kinase ChvG [Azospirillum brasilense
Sp245]
Length = 582
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541
S+ V E L Q NLI AL + GG+V++ + P G V + DDGP + +
Sbjct: 460 SMTVKGLEGRLTQVFQNLIANALSFSPPGGQVQLATRRTPDGAVEVTVSDDGPGIPEGKE 519
Query: 542 MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDA 594
F ++E + + GL+++++++E++G +R + D
Sbjct: 520 EAIFERF----YTERPAGEKFGTHSGLGLSISKQIVEAHGGTIRAANRLGRDG 568
>gi|325107600|ref|YP_004268668.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324967868|gb|ADY58646.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 1074
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ +AVRP+A Q +++ +S Q ++V + + QAL NL+ A T+
Sbjct: 784 PVDLVQLIEQSLDAVRPVARQQNQELAVSLPKQPVIVHADSVRIMQALENLLNNACKYTE 843
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE-DNMTWNFV 567
GG++E+ A+V + D+G M + P +LF+++ D
Sbjct: 844 EGGRIEL-RLTIQGVLAMVEVQDNGIGMD-----PEILPVVFDLFTQSKRSLDRSQGGLG 897
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
GLT+ + L++ + V S +G+G T
Sbjct: 898 IGLTLVKNLIDLHDGTVTAFSE-----GMGAGST 926
>gi|220911015|ref|YP_002486324.1| multi-sensor signal transduction histidine kinase [Arthrobacter
chlorophenolicus A6]
gi|219857893|gb|ACL38235.1| multi-sensor signal transduction histidine kinase [Arthrobacter
chlorophenolicus A6]
Length = 563
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P + L + A+RPLA +Q + L + + +E L+Q +NL+ A+
Sbjct: 400 LTPVRLGHTLDLVASALRPLAKLQNVTIALDPVPDDPEILADEIQLQQVFTNLVSNAIKF 459
Query: 507 TQVGGKVEIVSAAAPAGD----ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
T GG++E+ S + A D A V + D+G + H T F + N + +
Sbjct: 460 TPSGGRIEVGSESHAAADGSRWATVRVADNGIGISSDEIDHVFTRF---YRASNAMSGAI 516
Query: 563 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 617
+ GL + ++++ +G + V S LG+ GT V + LP A S N
Sbjct: 517 PGTGL-GLAITKDIVARHGGTIDVAS------TLGA-GTTVTVSLPLDADRSQSN 563
>gi|289524121|ref|ZP_06440975.1| putative sensor histidine kinase [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289502777|gb|EFD23941.1| putative sensor histidine kinase [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 459
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 403 NNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462
+N S N L+ + + L ++ KD+ + +L L ++P +++++L L E
Sbjct: 262 DNLSPSIRDNLLRLNNQVLRMERLVKDL---LDMSSLETLSGLDLKPVHLTELLSALIED 318
Query: 463 VRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA 522
+ L+ + +E++ LS++L V +E LR+A SNL++ A+ + GG++ I + A
Sbjct: 319 YQLLSDARSIMMEVN-LSENLWVKGDEEKLRRAFSNLLDNAIKYNEDGGQIVIRAKREVA 377
Query: 523 GDA--LVVIDDDGP 534
A +V+I++ GP
Sbjct: 378 ETAVIVVIIENTGP 391
>gi|402825046|ref|ZP_10874369.1| integral membrane sensor signal transduction histidine kinase
[Sphingomonas sp. LH128]
gi|402261432|gb|EJU11472.1| integral membrane sensor signal transduction histidine kinase
[Sphingomonas sp. LH128]
Length = 454
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G R +++++ ++ E V+P+A + ++V + ++ LV + L Q L N++E
Sbjct: 296 RRAGFRRFDLAELATEIVEMVQPVAQERGQRVLMERADEAKLVG-DRQLLSQLLVNMLEN 354
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
A+ T G ++ VS A A ++V+ DDGP + + H + FG
Sbjct: 355 AVRHTPSGTRIR-VSIAREAQAVVLVVTDDGPGIPASQREHVMRRFG 400
>gi|357633132|ref|ZP_09131010.1| signal transduction histidine kinase, nitrogen specific, NtrB
[Desulfovibrio sp. FW1012B]
gi|357581686|gb|EHJ47019.1| signal transduction histidine kinase, nitrogen specific, NtrB
[Desulfovibrio sp. FW1012B]
Length = 620
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP +++D+ RP A + ++L+E + + + L QAL NL A+
Sbjct: 458 RPVSLADLAAHAARLTRPDAAARGVDIDLAEAAGGPEIPADPDRLAQALLNLCLNAIQSM 517
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM------HYMTQMHSLTPFGSELFSENMVEDN 561
+ GG + + + AP G A + + D G + ++ P G+ L
Sbjct: 518 EAGGVMRLATGTAPDGRAFISVADTGSGIDPEERDRIFDPYYTTKPHGTGL--------- 568
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGK 619
GL +A +++ ++G +R+ A GGT ++LP+ +++L K
Sbjct: 569 -------GLPIAHKIVVAHGGEIRL-------ARRPGGGTLATVYLPAATGITNLGDK 612
>gi|405355853|ref|ZP_11024965.1| Flagellar sensor histidine kinase FleS [Chondromyces apiculatus DSM
436]
gi|397091125|gb|EJJ21952.1| Flagellar sensor histidine kinase FleS [Myxococcus sp. (contaminant
ex DSM 436)]
Length = 547
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 46/195 (23%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-------------SLL 484
A+ L++ IR + D++ DL + VRPL + R ++L EL + +L
Sbjct: 366 AVGMLEEEAIR---LEDIVRDLLDVVRPL-EPRPRPLQLGELVRRALGQMHGPPDAPTLR 421
Query: 485 VAVEEPA-----------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+V+E A L+ A+++L+ A+ + GGKV + A G LVV +D+G
Sbjct: 422 FSVDEAAETPSLEGDETLLQLAVTHLVRNAVQASPAGGKVRMTVEPANGGVRLVV-EDEG 480
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 593
P + + PF F + GL + R ++ ++ VR S +
Sbjct: 481 PGIPDVDPQRVFQPF----FLTRANGRGL------GLAIVRRVVLAHEGSVRASSRPR-- 528
Query: 594 AALGSGGTRVELWLP 608
GG R ELWLP
Sbjct: 529 -----GGARFELWLP 538
>gi|116073055|ref|ZP_01470317.1| two-component sensor histidine kinase, phosphate sensing
[Synechococcus sp. RS9916]
gi|116068360|gb|EAU74112.1| two-component sensor histidine kinase, phosphate sensing
[Synechococcus sp. RS9916]
Length = 382
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 441 PLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNL 499
P+ + P +S+++G + +VRPLA +QR + L+ + + L+ ++P L +A+ NL
Sbjct: 221 PIDSSAYSPLVLSELVGSAWSSVRPLA--EQRNISLTIQGEATALLRGDQPKLHRAILNL 278
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-----PDMHYM 539
++ AL + GG+VE V G L+ + D G PD+ M
Sbjct: 279 LDNALRYSPEGGQVE-VDIQPSGGWWLLAVRDHGQGLSEPDLEQM 322
>gi|392966617|ref|ZP_10332036.1| PAS/PAC sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
gi|387845681|emb|CCH54082.1| PAS/PAC sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
Length = 951
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++ ++ E +PL QQRQ+ L+ SL++ +E L+Q L NL+ L T
Sbjct: 650 QPIDLVTLVRQTVEVAQPLYEQQQRQLSLALPPYSLVMQGDETRLKQVLMNLLTNGLKYT 709
Query: 508 QVGGKV----EIVSAAAPAGDALVVIDDDG 533
Q G V E+ +A + AL+ + DDG
Sbjct: 710 QPAGHVWVSLELADNSALSKQALLRMKDDG 739
>gi|398820399|ref|ZP_10578925.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
gi|398228936|gb|EJN15032.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
Length = 449
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
ALR+ L+N+I+ AL G+ V A G +V IDD+G + + L PF
Sbjct: 342 ALRRILANIIDNALAY----GQAAHVRTALKDGAFVVSIDDEGQGIPVDQRQTVLEPFHR 397
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
S N T GL V R L+E++G + + +A GGTRV + LP
Sbjct: 398 LEKSRN----RATGGAGLGLAVVRNLVEAHGGTIEI-------SAAPGGGTRVNVTLP 444
>gi|381397955|ref|ZP_09923363.1| ATP-binding region ATPase domain protein [Microbacterium
laevaniformans OR221]
gi|380774621|gb|EIC07917.1| ATP-binding region ATPase domain protein [Microbacterium
laevaniformans OR221]
Length = 567
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 13/138 (9%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
+++++ Q + A + A R AL NL+ AL T VGG V I A A D ++ I D
Sbjct: 423 EIDIASAEQIAVFADRDDAAR-ALGNLLSNALKFTPVGGAVRI-EVAGVAADVMLTISDT 480
Query: 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 592
GP + PF + E T GL +AR L G V ++S
Sbjct: 481 GPGIGPDALAQVFDPF----YRGEQAEVRATPGTGLGLPIARMLARRNGGEVMIVS---- 532
Query: 593 DAALGSGGTRVELWLPSP 610
L GT+ L LP P
Sbjct: 533 ---LPGHGTKATLLLPRP 547
>gi|150388384|ref|YP_001318433.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
gi|149948246|gb|ABR46774.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
Length = 463
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALM 505
+ P N+ +++ +F ++ H+Q++++ + + L +++ V++ RQ L NL++ A+
Sbjct: 316 VSPNNIGNLVDGVFLQMK--FHLQEKKIRVEKRLDTTIIAEVDQERFRQVLINLLDNAIR 373
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
GK+E+ + + ++ I D GP + + H P+ E F + +
Sbjct: 374 HMPENGKIEVCLEKSLDKNFILEIHDSGPG---IKEEH--LPYIFERFYKADPSRKKSGG 428
Query: 566 FVAGLTVARELLESYGCVVRV 586
GLT+++ ++E++G + +
Sbjct: 429 AGLGLTISKHIVEAHGGEINI 449
>gi|407701250|ref|YP_006826037.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Black Sea 11']
gi|407250397|gb|AFT79582.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Black Sea 11']
Length = 945
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P N+ ++LG E ++PL +Q + + +++ + V + L Q SN+I A T
Sbjct: 645 KPVNLCEILGTAIETIQPLIDEKQHTLSIEKVAIPVWVNGDLIRLSQIFSNIINNAAKYT 704
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
GG +E V + G + + D+G PD ++ ++ S++ E +E +
Sbjct: 705 PPGGNIE-VRISTFDGKVTITVKDNGEGIPPD-----KLETVFDMFSQV--EGALERSQG 756
Query: 564 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPS 609
GLT+ + L E + V V S G G GT+ E+ LP+
Sbjct: 757 -GLGIGLTLVKRLTELHDGTVNVFSD-------GVGKGTKFEVILPT 795
>gi|338740694|ref|YP_004677656.1| histidine kinase [Hyphomicrobium sp. MC1]
gi|337761257|emb|CCB67090.1| Histidine kinase [Hyphomicrobium sp. MC1]
Length = 294
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
LRQ N+I AL TQ G VE+++ + +G ++ I D G M ++TPFG
Sbjct: 168 LRQIFMNIISNALKFTQATGIVEVIAHRSVSGGTIIAIRDSGLGMTAEEIDIAMTPFGQV 227
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ + + GL +A+ L+E +G V+ + S + GT V + P+
Sbjct: 228 DSGRSRWREGVGL----GLPIAKALVELHGGVIEIRSKKGS-------GTDVVMAFPA 274
>gi|430808189|ref|ZP_19435304.1| sensory histidine kinase [Cupriavidus sp. HMR-1]
gi|429499475|gb|EKZ97898.1| sensory histidine kinase [Cupriavidus sp. HMR-1]
Length = 462
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
G LFE LA + +QV L L +V + LR+ALSNL+ AL T G V +V
Sbjct: 320 GALFEFYEALA--EDKQVAL-RLQGDGIVEGDRLMLRRALSNLLSNALRHTPQAGAV-VV 375
Query: 517 SAAAPAGDALVVIDDDGPDM 536
A A G +V +++DGP++
Sbjct: 376 EAHAEGGSVVVAVENDGPEI 395
>gi|337278060|ref|YP_004617531.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729136|gb|AEG91512.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis TTB310]
Length = 1541
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++DV+ E+ RPL ++ + + L + + L Q LSNLI A T
Sbjct: 1241 QPVLLADVVAAALESTRPLVRAAGHRLTVRLPQEPLWLQADPLRLGQLLSNLIGNAAKYT 1300
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDD-GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
GGK+E+ + A P + V D+ G D + +M +LF++ E +
Sbjct: 1301 PHGGKIELSAEADPEQVVVTVADNGIGIDPSEIERMF-------DLFTQAHDERGRPNDG 1353
Query: 567 VA-GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 608
+ GL ++R + E +G W A+ G G G+R +L LP
Sbjct: 1354 LGIGLALSRSIAELHGG-------WLRAASAGRGQGSRFQLGLP 1390
>gi|196231100|ref|ZP_03129960.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
gi|196224930|gb|EDY19440.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
Length = 786
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMR 506
RP +V++ + + EA+RP Q+ +++L E + V + + Q +SNL+ A+
Sbjct: 492 RPVDVNESIHRVVEALRPAIDQQRHELQLLLENDAKIWVDADPTRVEQIISNLLTNAIKY 551
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMTQMHSLTPFGSELFSENMVEDNMTW 564
T+ GG++ I A +A++ ++D G + + Q+ L G D T
Sbjct: 552 TRKGGEIRI-EARREGHEAVISVNDTGIGIAPRMLPQIFDLFTQGDHSL------DRPTG 604
Query: 565 NFVAGLTVARELLESYGCVVRVIS 588
GL++ R L+E +G + S
Sbjct: 605 GLGIGLSLCRRLVELHGGTITAFS 628
>gi|452965117|gb|EME70146.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 477
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 466 LAHMQQRQVE-LSELS--------QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
LA M Q VE L +L QSL+V AL++AL+NLI+ A+ + GG V
Sbjct: 337 LAAMVQGMVEDLDDLGARCGYRGPQSLVVEARPAALKRALANLIDNAI---KYGGSAA-V 392
Query: 517 SAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 576
+ DALVV++D GP + + PF T GL VAR
Sbjct: 393 TLETSGRDALVVVEDQGPGIPAEARERVFAPF----VRLETSRSRDTGGTGLGLAVARAA 448
Query: 577 LESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ ++G + T A GG RV + LP
Sbjct: 449 IRAHGGDI-------TLADRPGGGLRVTVSLPG 474
>gi|148655456|ref|YP_001275661.1| response regulator receiver sensor signal transduction histidine
kinase [Roseiflexus sp. RS-1]
gi|148567566|gb|ABQ89711.1| response regulator receiver sensor signal transduction histidine
kinase [Roseiflexus sp. RS-1]
Length = 391
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 437 LALAPLKQNGIR--PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALR 493
L L ++ N IR P + DV+ ++ ++PLAH +EL+ Q V + +P +
Sbjct: 229 LYLQEVRSNEIRRVPVVIHDVVREIIAEMQPLAHAA--HLELTSSIQPTAVYMGDPIGIG 286
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
QAL LI+ A+ T G++ + P+ LV ++D G + PF
Sbjct: 287 QALRALIDNAVKFTPAPGRISVTVIDEPS-RVLVRVEDTGIGIPAEAHEKIFLPF----- 340
Query: 554 SENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAAL 596
++D + + GL +AR ++E++G + V S +A
Sbjct: 341 --YQIDDTLARPYAGVGLGLAIARHVIEAHGGQISVRSAVNAGSAF 384
>gi|160903064|ref|YP_001568645.1| PAS/PAC sensor signal transduction histidine kinase [Petrotoga
mobilis SJ95]
gi|160360708|gb|ABX32322.1| PAS/PAC sensor signal transduction histidine kinase [Petrotoga
mobilis SJ95]
Length = 929
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
K N I N+ +++ + + V L + +L+ V++ ++Q L NLI+
Sbjct: 776 KINQIEEVNLIEIIRGIILMYEDFIQQKHVMVNTDWLKEEILIKVDKDKIKQVLMNLIKN 835
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
AL GK++I I +DGP + + TPF
Sbjct: 836 ALESVNNNGKIDIKVGFTAENKVFFEITNDGPSIPQEIKEKLFTPF 881
>gi|395494258|ref|ZP_10425837.1| sensory transduction histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 469
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
RP N+S+V+G + A +P+A + + L+E L+VA + L Q L+NLI+ A+
Sbjct: 306 FRPVNLSEVIGHVVAAHQPVAEDDGKAL-LAEHEPGLVVAGDAELLAQMLTNLIDNAIRH 364
Query: 507 TQVGGKVEIVSAAAPAGDALV-VIDDDGPDMHYMTQMHSLTPF 548
T G IVS D+++ I DDGP + +++ L+ F
Sbjct: 365 TPAGSL--IVSKLERMDDSVIATISDDGPGVPAGERVNVLSRF 405
>gi|239813727|ref|YP_002942637.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
gi|239800304|gb|ACS17371.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
Length = 641
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P + D + + EAVRPL + + + L +A + + Q +SNL+ A T
Sbjct: 348 KPVRLRDAIAEAIEAVRPLIDGKSQTLHLQTQDADPWIAGDSARVVQIVSNLVHNAAKFT 407
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG + VS + A DA + + DDGP +
Sbjct: 408 GNGGNIH-VSLSRTAADADISVRDDGPGI 435
>gi|108760500|ref|YP_633363.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
gi|108464380|gb|ABF89565.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
Length = 490
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R ++ L DL + PLA R + L S S +V + LR AL+NL++ AL
Sbjct: 330 RALDLVQQLRDLISDMAPLALRSGRAIALEAASPSEMVLGQADGLRSALANLLDNALRAE 389
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG V IV A V + D GP + + + PF W+
Sbjct: 390 PAGGTV-IVRMEASTSSVTVDVVDHGPGVEESDRENIFEPFWRR---------EGQWSGT 439
Query: 568 A-GLTVARELLESYG 581
GL +AR + E +G
Sbjct: 440 GLGLAIARRISEGHG 454
>gi|389721742|ref|ZP_10188470.1| multi-sensor signal transduction histidine kinase [Rhodanobacter
sp. 115]
gi|388446867|gb|EIM02886.1| multi-sensor signal transduction histidine kinase [Rhodanobacter
sp. 115]
Length = 449
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
Query: 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL-MRTQVGGKVEIV 516
DL V LA ++QR E +SL V + L QAL NL+ A+ GG+V V
Sbjct: 313 DLAALVGKLAKLEQRLPVRVEPGESLAVQADADQLEQALINLLHNAVEAALTTGGEVR-V 371
Query: 517 SAAAPAGDALVVIDDDGPD----MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTV 572
AG A+V ++DDGP + + P GS + GL +
Sbjct: 372 RWHREAGRAIVAVEDDGPGPPSSENLFVPFFTTKPGGSGI----------------GLAL 415
Query: 573 ARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
A+++ E++ V +++ + DAA G +LWLP P
Sbjct: 416 AQQIAEAHEGGVSLLA--RDDAA----GAVAQLWLPLP 447
>gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase
[Methanococcus vannielii SB]
gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase
[Methanococcus vannielii SB]
Length = 641
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
NV D + D+ E + PLA ++ ++L + + LL+ ++ + Q +NLIE A+ +
Sbjct: 487 NVKDTVSDVIEYLTPLA--TEKNIKLKQDIKDLLINADKDRITQVFTNLIENAIKFSPAN 544
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
+ I+ GD + + D+G + L + + + GL
Sbjct: 545 ESIMIIGKETENGDVHITVKDNGAGI----PKKDLEKIFDQFYQVDSSTKRKKGGSGLGL 600
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGT 601
V + +++++G + W ++ LG G T
Sbjct: 601 AVCKSIIQAHGGTI-----W-VESELGRGST 625
>gi|344943144|ref|ZP_08782431.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344260431|gb|EGW20703.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 872
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 24/174 (13%)
Query: 437 LALAPLKQNGIR----PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L +A + Q IR ++D++ + E RPL +++++ +S+ + + L
Sbjct: 569 LDMARIMQGKIRLKIEHFELTDIVNNAIETSRPLLESRKQELIISQTMTPQWLEGDHVRL 628
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMTQMHSLTPF 548
Q LSNL+ A T GGK+ ++S DA++ I D G PD + P
Sbjct: 629 AQVLSNLLNNAAKYTGEGGKI-MLSVMRKGSDAVIEIKDTGIGISPD---------ILPQ 678
Query: 549 GSELFSE-NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
+LF++ + + GLT+ R+L+E +G V S +G G T
Sbjct: 679 IFDLFTQADHTLAHSQGGLGIGLTLVRQLVEIHGGTVTAASE-----GIGQGST 727
>gi|298294322|ref|YP_003696261.1| integral membrane sensor signal transduction histidine kinase
[Starkeya novella DSM 506]
gi|296930833|gb|ADH91642.1| integral membrane sensor signal transduction histidine kinase
[Starkeya novella DSM 506]
Length = 618
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHY 538
S +V + L Q ++NLI+ A T GG+V + DA+ +++DDDGP +
Sbjct: 477 SDEFIVPGHDSRLGQVINNLIDNARSFTPKGGEVRVTCRRHR--DAVEIIVDDDGPGI-- 532
Query: 539 MTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
H+LT +++ E N GL+++R+++E++G +
Sbjct: 533 --PPHALTRIFERFYTDRPEEQGFGQNSGLGLSISRQIVEAHGGRI 576
>gi|311109657|ref|YP_003982510.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans A8]
gi|310764346|gb|ADP19795.1| His Kinase A phosphoacceptor domain protein 14 [Achromobacter
xylosoxidans A8]
Length = 495
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G P ++ D+ + + P A +Q + L + + V E LR+A+S
Sbjct: 322 ASLAEGGFTPEPVDLVDLADGVIRGLLPTARARQLDIGLEADIRPVTVLGAEWLLREAVS 381
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G+V V AG A +V++D+GP M
Sbjct: 382 NLVDNAIRYTSSAGEV-TVKVQVEAGQARLVVEDNGPGM 419
>gi|119899646|ref|YP_934859.1| two component system sensor protein [Azoarcus sp. BH72]
gi|119672059|emb|CAL95973.1| two component system sensor protein [Azoarcus sp. BH72]
Length = 517
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 427 AKDIE-MPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLV 485
A+ IE M LAL +Q P ++ + +L EA+ L +R V ++ L +
Sbjct: 350 ARRIERMIRDVLALGRREQAEPEPLELAGYVAELIEAL-ALRSADERAVFAQDIPPGLTL 408
Query: 486 AVEEPALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
A++ L Q L NL+ A R G G V I ++A P G + + DDGP + T+ +
Sbjct: 409 AIDRAHLHQILDNLLTNA-RRYCSGQPGSVRIRASALPGGRVALHVRDDGPGIDESTRAN 467
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLES 579
PF F+ + + GL +AREL E+
Sbjct: 468 LFEPF----FTTHPKGTGL------GLYIARELAEA 493
>gi|374299340|ref|YP_005050979.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio africanus str. Walvis Bay]
gi|332552276|gb|EGJ49320.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio africanus str. Walvis Bay]
Length = 485
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALM 505
+ P +V+ VL + AV + +QQ++VEL+ E + +L+ + + +A NL+ AL
Sbjct: 338 LEPVDVTQVLDQM--AVFLESKLQQQEVELAREYAPGVLIMADRDLIYRAFYNLVANALE 395
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
GK+ I S A AG +V I+D G T PF + +D+ T
Sbjct: 396 ALNGPGKIRI-SVNAAAGQVMVNIEDSGTGFAPETLEKLRDPFFT-------TKDSGTG- 446
Query: 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLPS 609
GLT+ +L +G + LG+ GG RVE+ P+
Sbjct: 447 --LGLTIVDTILGGHGAQMH----------LGNNPEGGARVEIIFPA 481
>gi|91974848|ref|YP_567507.1| periplasmic sensor signal transduction histidine kinase
[Rhodopseudomonas palustris BisB5]
gi|91681304|gb|ABE37606.1| signal transduction histidine kinase [Rhodopseudomonas palustris
BisB5]
Length = 563
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
L Q +SNL+ A + GGKV+IV + +V+DDDGP + E
Sbjct: 448 LGQVISNLLSNAQSFSHPGGKVQIVCRRRKT-EIEIVVDDDGPGIRDDAFEKIF-----E 501
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS---PWKTDAALGSGGTRVELWLP 608
F + N GL+++++++E++G +R + P D S G R + LP
Sbjct: 502 RFYTDRPHQGFGQNSGLGLSISKQIVEAHGGKIRAENRPGPRDADGEPTSAGARFVVRLP 561
Query: 609 S 609
S
Sbjct: 562 S 562
>gi|359783013|ref|ZP_09286231.1| sensory histidine protein kinase TctE [Pseudomonas psychrotolerans
L19]
gi|359369159|gb|EHK69732.1| sensory histidine protein kinase TctE [Pseudomonas psychrotolerans
L19]
Length = 467
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
+ + G +SD+ +L A+ PLAH + + +++ ++ E L + L NL+E
Sbjct: 317 IAEGGAERLELSDLARELAMALAPLAHAKGVALAFEPFAKAPVIG-EPTLLNELLCNLVE 375
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
AL +Q GG + +V AP A++ ++DDGP + + +++F D
Sbjct: 376 NALAHSQSGGNI-VVRVLAP---AVLEVEDDGPGIPANAR--------AKVFERFQRLDP 423
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ GL + E+ ++ ++++ D AL GG RV + P+
Sbjct: 424 QSGGAGLGLAIVGEICAAHRARIQLL-----DGAL--GGLRVRVEFPA 464
>gi|416396164|ref|ZP_11686411.1| two-component sensor histidine kinase [Crocosphaera watsonii WH
0003]
gi|357263014|gb|EHJ12077.1| two-component sensor histidine kinase [Crocosphaera watsonii WH
0003]
Length = 429
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQ-------NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ ++ + R+ +L Q+R PL++++ K+L
Sbjct: 145 IADTLAIACLLDQRGEWYERQLQRQQLKQQQERDRLDDLFHQVRNPLTALKVFGKLLLKR 204
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDA--VFLTKANIVRYNEETLKKMNNSAYSHP 394
+ E S IV++I+ +G+ L+ +++ + + + ++ N E++ +N ++S P
Sbjct: 205 LGGDEQSSSIVKNIVQEGEHLQDLIKDFESYQNSLINEEEVITLNTESVDISDNLSFSLP 264
Query: 395 ES 396
S
Sbjct: 265 AS 266
>gi|444305833|ref|ZP_21141610.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
SJCon]
gi|443481887|gb|ELT44805.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
SJCon]
Length = 556
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + L + A+RPLA +Q +E+ + + + +E L+Q +NL+ A+ T
Sbjct: 395 PVRLGQTLDLVAAALRPLAKLQNVTIEVDPVPEDPEILADEVQLQQVFTNLVSNAIKFTP 454
Query: 509 VGGKVEIVSAAAPAGD----ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564
GG++E+ S + A D A V + D G + H T F + N + +
Sbjct: 455 SGGRIEVGSESHAAEDGTRWATVSVADTGIGISSDEIDHVFTRF---YRASNAMSGAIPG 511
Query: 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 617
+ GL + ++++ +G + V S LG+ GT V + LP A S N
Sbjct: 512 TGL-GLAITKDIVVRHGGKIDVAS------TLGA-GTTVTVSLPLDADRSRAN 556
>gi|418048854|ref|ZP_12686941.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium rhodesiae JS60]
gi|353189759|gb|EHB55269.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium rhodesiae JS60]
Length = 380
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
L Q L+NL++ AL T+ GG V + SA A + + + DDG + H F
Sbjct: 259 LAQVLNNLLDNALRHTRTGGHVRL-SAERTANEVVFTVSDDGEGIAAEHLRHVFERF--- 314
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611
+ + GL +A+ L E++G + V SP LG GGT + +PS
Sbjct: 315 -YRADSARHRGQGGSGIGLAIAKALTEAHGGTIIVTSP-----GLG-GGTTFTVSIPSQP 367
Query: 612 PLSDLNGKSNET 623
G E+
Sbjct: 368 MAGARRGNQRES 379
>gi|241113400|ref|YP_002973235.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240861608|gb|ACS59274.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 467
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 28/161 (17%)
Query: 458 DLFEAVRPL--AHMQQ---RQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
DL +A R + AH ++ R +++ E + ++V + LR+ L NLI+ A+ T+ G
Sbjct: 323 DLSKAAREILEAHAEEALRRNIDVGLEAVRPVIVDGDATMLREMLVNLIDNAIRYTRPNG 382
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF----GSELFSENMVEDNMTWNFV 567
+V + A G+A+V ++D+GP + + F G+E +
Sbjct: 383 RVTVAVGQAD-GNAVVTVEDNGPGIPSGEREQVFERFYRIMGTEAEGSGL---------- 431
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL++ RE++E G V + D A G GG V + LP
Sbjct: 432 -GLSIVREVVEGAGGSVSL------DDAEGGGGLIVTVRLP 465
>gi|423076197|ref|ZP_17064911.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Desulfitobacterium hafniense DP7]
gi|361852760|gb|EHL04974.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Desulfitobacterium hafniense DP7]
Length = 536
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALSNLIEGAL 504
I P ++ DV+ + + PL ++++ ++ S + S + +E LR+ + NL+ AL
Sbjct: 372 IEPIDLVDVINAVESVIEPL--IEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNAL 429
Query: 505 MRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
T GG++++ V+ + L+ + D+G + Q P+ E F ++ +
Sbjct: 430 KFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRKEDQ-----PYIFEKFVQSDSSIHRQ 484
Query: 564 WNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSG---GTRVELWL 607
+N GL +A+EL E +G ++V+S + G G E WL
Sbjct: 485 YNGSGLGLALAKELAELHGGWIKVVSELDKGSLFTVGIPAGEGKEDWL 532
>gi|328545819|ref|YP_004305928.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain-containing protein [Polymorphum gilvum
SL003B-26A1]
gi|326415559|gb|ADZ72622.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Polymorphum gilvum SL003B-26A1]
Length = 607
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
S L ++ + + L Q +SNLI+ A + GG V V A LV +DDDGP +
Sbjct: 473 SRLDKAYEILGHDSRLGQVISNLIDNARSFSPPGGTVR-VGAERRGSQILVTVDDDGPGI 531
Query: 537 HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAAL 596
T F +++ + N GL+++R+++E++ +R + + D
Sbjct: 532 RAETIERIFERF----YTDRPEGEGFGNNSGLGLSISRQIIEAHRGTIRAENRMEADPET 587
Query: 597 GS---GGTRVELWLPSPAP 612
G G R + LP+ P
Sbjct: 588 GRARIAGARFVVALPAGRP 606
>gi|383452936|ref|YP_005366925.1| sensor histidine kinase [Corallococcus coralloides DSM 2259]
gi|380732530|gb|AFE08532.1| sensor histidine kinase [Corallococcus coralloides DSM 2259]
Length = 437
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547
+ P LRQ L NL++ A GG+VE+ A G A V + D GP + + P
Sbjct: 324 QAPRLRQVLLNLVKNAAEAAGEGGRVEVRIAVDADGSARVAVSDSGPGVTPEARARLFEP 383
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS-GGTRVELW 606
F F+ + GL V++ + E++G + D G+ GG R L
Sbjct: 384 F----FTTKPSGTGL------GLAVSQAIAEAHGG--------RIDVDTGALGGARFTLS 425
Query: 607 LPSPAPLSD 615
LPSP+ + +
Sbjct: 426 LPSPSRVQE 434
>gi|395494447|ref|ZP_10426026.1| sensor kinase protein [Pseudomonas sp. PAMC 25886]
Length = 431
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 52/122 (42%), Gaps = 26/122 (21%)
Query: 494 QALSNLIEGALM----RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+AL NL+ A+ R QVG KV P G + +DDDG + + PF
Sbjct: 330 RALQNLLRNAMRYCERRIQVGVKV------CPKG-CEIWVDDDGIGIPVDQRERIFEPF- 381
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS--GGTRVELWL 607
+ + D T F GL ++R LE+ G T A GS GG R LWL
Sbjct: 382 ---YRLDRSRDRATGGFGLGLAISRRALEAQG---------GTLTAQGSPLGGARFRLWL 429
Query: 608 PS 609
PS
Sbjct: 430 PS 431
>gi|421141114|ref|ZP_15601107.1| Periplasmic Sensor Signal Transduction Histidine Kinase
[Pseudomonas fluorescens BBc6R8]
gi|404507686|gb|EKA21663.1| Periplasmic Sensor Signal Transduction Histidine Kinase
[Pseudomonas fluorescens BBc6R8]
Length = 431
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 494 QALSNLIEGALM----RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+AL NL+ A+ R QVG KV P G + +DDDG + + PF
Sbjct: 330 RALQNLLRNAMRYCERRIQVGVKV------CPRG-CEICVDDDGIGIPVDQRERIFEPF- 381
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ + D T F GL ++R LE+ G + T A GG R LWLPS
Sbjct: 382 ---YRLDRSRDRATGGFGLGLAISRRALEAQGGTL-------TAQASPLGGARFRLWLPS 431
>gi|33594717|ref|NP_882361.1| sensor kinase [Bordetella pertussis Tohama I]
gi|33598903|ref|NP_886546.1| sensor kinase [Bordetella parapertussis 12822]
gi|384206014|ref|YP_005591753.1| putative sensor kinase protein [Bordetella pertussis CS]
gi|33564793|emb|CAE44121.1| putative sensor kinase protein [Bordetella pertussis Tohama I]
gi|33575033|emb|CAE39699.1| putative sensor kinase protein [Bordetella parapertussis]
gi|332384128|gb|AEE68975.1| putative sensor kinase protein [Bordetella pertussis CS]
Length = 487
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 314 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 373
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL++ A+ T G +V V A G A +V++D+GP M + F +N
Sbjct: 374 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGMSAEDIARASVRFRRGAAGKNK 432
Query: 558 VEDNMTWNFVAGLTVARELLESYG 581
+ GL + R ++E +G
Sbjct: 433 SGAGL------GLAIVRTIIEIHG 450
>gi|395793628|ref|ZP_10472990.1| sensor kinase protein [Pseudomonas sp. Ag1]
gi|395342215|gb|EJF73994.1| sensor kinase protein [Pseudomonas sp. Ag1]
Length = 431
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 494 QALSNLIEGALM----RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+AL NL+ A+ R QVG KV P G + +DDDG + + PF
Sbjct: 330 RALQNLLRNAMRYCERRIQVGVKV------CPRG-CEICVDDDGIGIPVDQRERIFEPF- 381
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ + D T F GL ++R LE+ G + T A GG R LWLPS
Sbjct: 382 ---YRLDRSRDRATGGFGLGLAISRRALEAQGGTL-------TAQASPLGGARFRLWLPS 431
>gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
69.14]
gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
69.14]
Length = 999
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
+ ++LV V+ L Q L+NL+ A+ + G+V IV G A+V + D GP ++
Sbjct: 612 ANTVLVHVDSQRLLQVLANLLSNAIKFSSDHGQV-IVEVTTDNGKAIVSVIDQGPGINQA 670
Query: 540 TQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG 599
+ F S+ ++ GL ++REL+E G + ++ +G
Sbjct: 671 FRERIFQRFAQADSSDTRAKEGTGL----GLAISRELIERMGGQIDF------ESTMGK- 719
Query: 600 GTRVELWLPSPAPLSDLNGKSN 621
G+R LP +PL L SN
Sbjct: 720 GSRFFFVLPLVSPLCTLKSDSN 741
>gi|88797981|ref|ZP_01113568.1| sensor histidine kinase PhoQ, putative [Reinekea blandensis MED297]
gi|88779178|gb|EAR10366.1| sensor histidine kinase PhoQ, putative [Reinekea sp. MED297]
Length = 448
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 20/160 (12%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
C+++ + L +A+ + + +++ E +SL VA++ + + + NLIE +
Sbjct: 306 CDLTGAVSRLGKALEKAFMHEDKVLDIPETDESLFVAMDSNDVLEVMGNLIENGF---KY 362
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
G V +VS +V IDDDGP + LT G L D++ G
Sbjct: 363 GRSVIMVSYERTEQQVMVHIDDDGPGISGEASKQILTR-GKRL-------DSIQPGQGIG 414
Query: 570 LTVARELLESYGCVVRV-ISPWKTDAALGSGGTRVELWLP 608
L + ++L+SYG V+ + SP GG R L LP
Sbjct: 415 LAMVNDILDSYGLVLTIATSP--------LGGARFSLSLP 446
>gi|424883850|ref|ZP_18307478.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392515511|gb|EIW40244.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 467
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 28/161 (17%)
Query: 458 DLFEAVRPL--AHMQQ---RQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
DL +A R + AH ++ R +++ E + ++V + LR+ L NLI+ A+ T+ G
Sbjct: 323 DLSKAAREILEAHAEEALRRNIDVGLEAVRPVIVDGDATMLREMLVNLIDNAIRYTRPNG 382
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF----GSELFSENMVEDNMTWNFV 567
+V + A G+A+V ++D+GP + + F G+E +
Sbjct: 383 RVTVAVGQAD-GNAVVTVEDNGPGIPSGEREQVFERFYRIMGTEAEGSGL---------- 431
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL++ RE++E G V + D A G GG V + LP
Sbjct: 432 -GLSIVREVVEGAGGSVSL------DDAEGGGGLIVTVRLP 465
>gi|409406143|ref|ZP_11254605.1| sensor kinase of copper sensing two-component system
[Herbaspirillum sp. GW103]
gi|386434692|gb|EIJ47517.1| sensor kinase of copper sensing two-component system
[Herbaspirillum sp. GW103]
Length = 459
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 444 QNGI-----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
+NGI P + + + +LF+ LA + Q++L+ + + +R+ALSN
Sbjct: 301 ENGISLPSYEPLQLQEEITELFDFYDALAEEKGLQLQLA---GDATIRGDRLMVRRALSN 357
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LI A+ T G + VS A GD LV +++DGP++
Sbjct: 358 LISNAMRYTPAAGSI-TVSIARSEGDVLVAVENDGPEI 394
>gi|359781219|ref|ZP_09284444.1| putative two-component system sensor kinase [Pseudomonas
psychrotolerans L19]
gi|359371279|gb|EHK71845.1| putative two-component system sensor kinase [Pseudomonas
psychrotolerans L19]
Length = 596
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 444 QNGI-RPCNVSDVLGDLFEAVRPLA--HMQQRQVELS-ELSQSLL--VAVEEPALRQALS 497
Q+G+ RP + +GDL E R ++R VEL+ EL + L V+++ L +
Sbjct: 441 QSGLQRPEKLPSEIGDLLEEARARHADEARERDVELAVELLHTPLPRVSLDPKQLGRVFD 500
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF---GSELFS 554
NL+ AL T GG++ ++ A L+ + D+G + Y Q PF GS+
Sbjct: 501 NLLSNALRHTPAGGRI-VIQALRQNDQLLMAVQDNGEGIAYAQQGRVFEPFVQIGSQKGG 559
Query: 555 ENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLPS 609
+ GL + +E++ +G + V+S P + GT++ + LP+
Sbjct: 560 AGL-----------GLALCKEIIRQHGGRIGVVSRPGQ--------GTQIFMTLPT 596
>gi|302537328|ref|ZP_07289670.1| two-component system sensor kinase [Streptomyces sp. C]
gi|302446223|gb|EFL18039.1| two-component system sensor kinase [Streptomyces sp. C]
Length = 470
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIEGALMRTQ 508
++ ++ + A RP A +++ V L+E +S + +P AL AL +I+ AL T
Sbjct: 320 TDIGELAAERVAAWRPYA--EEKGVRLTEAGRSAVTGWADPIALSSALDAVIDNALKFTP 377
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
G +VE VS +A ALVV+ D GP + + F +N+ +
Sbjct: 378 AGEEVE-VSVSAEGRSALVVVADRGPGLTEEELLRVGDRFWRSGRHQNVKGSGL------ 430
Query: 569 GLTVARELLESYG 581
GL+++R LL S G
Sbjct: 431 GLSISRALLASGG 443
>gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis sp.
HTCC2633]
gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis
alexandrii HTCC2633]
Length = 624
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 15/177 (8%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMR 506
RP SDV+ + +A P A + + LS+ + S + V+ +RQ LSNL+ A+
Sbjct: 313 RPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMVDANRVRQILSNLLGNAIKF 372
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
T+ G+V + + G V + D GP M Q F S + +
Sbjct: 373 TET-GEVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGRFEQADMSHSRSHEGSGL-- 429
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNET 623
GL +AREL+ G + V S G G W PA +DL+ + ET
Sbjct: 430 --GLAIARELVVLMGGQIGVHS------RPGQGAC---FWFEFPARPADLDDEPQET 475
>gi|15838056|ref|NP_298744.1| two-component system, hybrid sensor/regulatory protein [Xylella
fastidiosa 9a5c]
gi|9106475|gb|AAF84264.1|AE003975_7 two-component system, hybrid sensor/regulatory protein [Xylella
fastidiosa 9a5c]
Length = 498
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 455 VLGDLFEAVRPLAHMQQRQ---VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+L DLF+ V+ L V + E + L V L+Q L NL A+ GG
Sbjct: 221 LLADLFQTVQLLLRSSVPDCIAVLMEECEEDLSVEANHTELQQCLLNLALNAIHAMPTGG 280
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
++ +V+ + + D G M T+ +PF F+ + GL
Sbjct: 281 RLTLVAERHDGDRICISVTDTGIGMSEETRARLFSPF----FTTKSDGTGL------GLI 330
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 614
+ + ESYG +++V S GTR +L LP+ AP S
Sbjct: 331 SCKRIAESYGGLIQVCSELGV-------GTRFDLILPARAPAS 366
>gi|408417454|ref|YP_006628161.1| sensor kinase protein [Bordetella pertussis 18323]
gi|401779624|emb|CCJ65166.1| putative sensor kinase protein [Bordetella pertussis 18323]
Length = 487
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 314 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 373
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL++ A+ T G +V V A G A +V++D+GP M + F +N
Sbjct: 374 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGMSAEDIARASVRFRRGAAGKNK 432
Query: 558 VEDNMTWNFVAGLTVARELLESYG 581
+ GL + R ++E +G
Sbjct: 433 SGAGL------GLAIVRTIIEIHG 450
>gi|227506136|ref|ZP_03936185.1| two-component system sensor kinase TcsS4 [Corynebacterium striatum
ATCC 6940]
gi|227197243|gb|EEI77291.1| two-component system sensor kinase TcsS4 [Corynebacterium striatum
ATCC 6940]
Length = 375
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 ----PD-MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
PD + Y+ + + + GLT+++ L+E++G + S
Sbjct: 300 EGIPPDQLRYIFE---------RFYRGDAARSRDAAGAGIGLTISKALIEAHGGTLTATS 350
Query: 589 PWKTDAALGSG-GTRVELWLPSPAPLSD 615
P G G G L LP P P S+
Sbjct: 351 P-------GPGRGAVFTLRLPLPPPDSE 371
>gi|456735195|gb|EMF59956.1| Sensory histidine kinase BaeS [Stenotrophomonas maltophilia EPM1]
Length = 467
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 24/135 (17%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM 542
L V+ +E L+Q L+NL+E AL T+ GG+V + +A PAG LVV +D P
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTRAGGRVRVQAARVPAGVQLVV-EDTAP-------- 401
Query: 543 HSLTPFGSELFSENMVEDNMTWNFVA-----GLTVARE-LLESYGCVVRVISPWKTDAAL 596
+ P L E + N + GL ++ +L +G + SP
Sbjct: 402 -GVPPDKCALLFERFYRVESSRNRASGGSGLGLAISHNIILAHHGVIHAAPSPL------ 454
Query: 597 GSGGTRVELWLPSPA 611
GG RV + LP PA
Sbjct: 455 --GGLRVVITLPEPA 467
>gi|422322169|ref|ZP_16403211.1| sensor protein [Achromobacter xylosoxidans C54]
gi|317402961|gb|EFV83501.1| sensor protein [Achromobacter xylosoxidans C54]
Length = 447
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL++ A+ T GG ++I APAG AL++IDD+GP + + F
Sbjct: 345 NLLDNAIKYTPPGGHIDI-RLEAPAGQALLLIDDNGPGIPPGERARVFDRF-------YR 396
Query: 558 VEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
+E N GL +AR + E +G + + DA GSG + PAP
Sbjct: 397 LEGNTQHGSGLGLAIARAIAERHGATITL-----EDAPGGSGLRARVAFARGPAP 446
>gi|410474979|ref|YP_006898260.1| sensor kinase protein [Bordetella parapertussis Bpp5]
gi|408445089|emb|CCJ51886.1| putative sensor kinase protein [Bordetella parapertussis Bpp5]
Length = 471
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL++ A+ T G +V V A G A +V++D+GP M + F +N
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGMSAEDIARASVRFRRGAAGKNK 416
Query: 558 VEDNMTWNFVAGLTVARELLESYG 581
+ GL + R ++E +G
Sbjct: 417 SGAGL------GLAIVRTIIEIHG 434
>gi|398918706|ref|ZP_10658549.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
gi|398170874|gb|EJM58797.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
Length = 452
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 437 LALAPLKQNGIRP---CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALR 493
LALA + N RP +V +V + E + PLA + + + E ++ + V + E L
Sbjct: 287 LALAAAQSNTERPPTTVSVHEVYRRVLEDLLPLAESKNIDIGV-ESTEDVQVVISEMDLL 345
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+ NL++ A+ T GG+V++ S ++ + D GP + QM PF +
Sbjct: 346 ILVKNLVDNAIRYTPCGGRVDL-SVELVQDSVILQVKDSGPGITADEQMRVFDPFYRSIG 404
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+E GL++ + + E G VR+ +TD +
Sbjct: 405 TEEA-------GSGLGLSIVKAIAERTGARVRLSFSDETDKS 439
>gi|386392731|ref|ZP_10077512.1| signal transduction histidine kinase, nitrogen specific
[Desulfovibrio sp. U5L]
gi|385733609|gb|EIG53807.1| signal transduction histidine kinase, nitrogen specific
[Desulfovibrio sp. U5L]
Length = 616
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 29/178 (16%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP +++D+ RP A + V+L+E + + + L QAL NL A+
Sbjct: 454 RPVSLADLAAHAARLTRPDATARGVAVDLAEAAGGPEIPADPDRLTQALLNLCLNAIQSM 513
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM------HYMTQMHSLTPFGSELFSENMVEDN 561
GG + + + AP G A + + D G + ++ P G+ L
Sbjct: 514 GAGGVMRLATGTAPDGRAFISVADTGSGIDPEERDRIFDPYYTTKPHGTGL--------- 564
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGK 619
GL +A +++ ++G +R+ A GGT ++LP+ A ++L K
Sbjct: 565 -------GLPIAHKIVVAHGGEIRL-------ARRPEGGTMATVYLPTAAGTTNLGDK 608
>gi|38232698|ref|NP_938465.1| two-component system sensor protein [Corynebacterium diphtheriae
NCTC 13129]
gi|38198956|emb|CAE48571.1| Putative two-component system sensor protein [Corynebacterium
diphtheriae]
Length = 375
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T VGG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVVVDRQRFGQVMSNLLSNALRHTPVGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGSGIGLTISKALIEAHGGTLTATSP 351
>gi|317126128|ref|YP_004100240.1| integral membrane sensor signal transduction histidine kinase
[Intrasporangium calvum DSM 43043]
gi|315590216|gb|ADU49513.1| integral membrane sensor signal transduction histidine kinase
[Intrasporangium calvum DSM 43043]
Length = 403
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA-GDALVVIDDDGP--DMHYMTQMH 543
V+ LR+AL NL++ AL T GG V + A P G + + D G D H+ Q
Sbjct: 281 VDADRLREALGNLLDNALRHTPPGGHVAVTMRADPHRGSTDIEVTDTGRGFDPHHAEQ-- 338
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 603
LF E + GLT+AR L+E++G + +S LG G T
Sbjct: 339 --------LFHRFHRESADSSGSGLGLTIARALVEAHGGTLTAMS-----EGLGRGAT-F 384
Query: 604 ELWLPSPA 611
+ LP+ A
Sbjct: 385 TITLPTAA 392
>gi|168700348|ref|ZP_02732625.1| two-component hybrid sensor and regulator [Gemmata obscuriglobus
UQM 2246]
Length = 475
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 13/148 (8%)
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALR--QALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
A ++ V L QS + V A+R QA++N+++ AL T GGKV V A A G+
Sbjct: 199 ARFAEKHVALDIEVQSARLPVSGDAVRLEQAIANVLDNALKFTPPGGKVR-VRAEADRGE 257
Query: 525 ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
A V + D G + H F + D GLT+ + L+E +G +
Sbjct: 258 AKVTVSDTGAGIAPEDLPHVFDLF----VQADRSLDRTVGGLGVGLTIVKGLVELHGGRI 313
Query: 585 RVISPWKTDAALGSGGTRVELWLPSPAP 612
V S LG+G T V L LP P
Sbjct: 314 AVTSD-----GLGAGTTAV-LHLPLAEP 335
>gi|33603982|ref|NP_891542.1| sensor kinase [Bordetella bronchiseptica RB50]
gi|412340703|ref|YP_006969458.1| sensor kinase protein [Bordetella bronchiseptica 253]
gi|427816991|ref|ZP_18984055.1| putative sensor kinase protein [Bordetella bronchiseptica 1289]
gi|33568958|emb|CAE35372.1| putative sensor kinase protein [Bordetella bronchiseptica RB50]
gi|408770537|emb|CCJ55331.1| putative sensor kinase protein [Bordetella bronchiseptica 253]
gi|410567991|emb|CCN25564.1| putative sensor kinase protein [Bordetella bronchiseptica 1289]
Length = 471
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL++ A+ T G +V V A G A +V++D+GP M + F +N
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGMSAEDIARASVRFRRGAAGKNK 416
Query: 558 VEDNMTWNFVAGLTVARELLESYG 581
+ GL + R ++E +G
Sbjct: 417 SGAGL------GLAIVRTIIEIHG 434
>gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51]
gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 564
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALSNLIEGAL 504
I P ++ DV+ + + PL ++++ ++ S + S + +E LR+ + NL+ AL
Sbjct: 400 IEPIDLVDVINAVESVIEPL--IEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNAL 457
Query: 505 MRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
T GG++++ V+ + L+ + D+G + Q P+ E F ++ +
Sbjct: 458 KFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRKEDQ-----PYIFEKFVQSDSSIHRQ 512
Query: 564 WNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSG---GTRVELWL 607
+N GL +A+EL E +G ++V+S + G G E WL
Sbjct: 513 YNGSGLGLALAKELAELHGGWIKVVSELDKGSLFTVGISAGEGKEDWL 560
>gi|190576269|ref|YP_001974114.1| two-component system sensor histidine kinase [Stenotrophomonas
maltophilia K279a]
gi|190014191|emb|CAQ47835.1| putative two-component system sensor histidine kinase
[Stenotrophomonas maltophilia K279a]
Length = 467
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM 542
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV +D P
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVV-EDTAP-------- 401
Query: 543 HSLTPFGSELFSENMVEDNMTWNFVA-----GLTVARE-LLESYGCVVRVISPWKTDAAL 596
+ P L E + N + GL ++ +L +G + SP
Sbjct: 402 -GVPPDKCALLFERFYRVESSRNRASGGSGLGLAISHNIILAHHGVIHAAPSPL------ 454
Query: 597 GSGGTRVELWLPSPA 611
GG RV + LP PA
Sbjct: 455 --GGLRVVITLPEPA 467
>gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
Length = 561
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALSNLIEGAL 504
I P ++ DV+ + + PL ++++ ++ S + S + +E LR+ + NL+ AL
Sbjct: 397 IEPIDLVDVINAVESVIEPL--IEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNAL 454
Query: 505 MRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
T GG++++ V+ + L+ + D+G + Q P+ E F ++ +
Sbjct: 455 KFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRKEDQ-----PYIFEKFVQSDSSIHRQ 509
Query: 564 WNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSG---GTRVELWL 607
+N GL +A+EL E +G ++V+S + G G E WL
Sbjct: 510 YNGSGLGLALAKELAELHGGWIKVVSELDKGSLFTVGISAGEGKEDWL 557
>gi|407647457|ref|YP_006811216.1| signal transduction histidine kinase [Nocardia brasiliensis ATCC
700358]
gi|407310341|gb|AFU04242.1| signal transduction histidine kinase [Nocardia brasiliensis ATCC
700358]
Length = 341
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P ++ +++ ++ A RP A Q ++ + ++V + AL + L+NL+ A+
Sbjct: 184 LEPVDLRELIDEVLAANRPTAARAQVELRAEQPDSRIVVTANDQALGRVLTNLVSNAIAH 243
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY--MTQMHSLTPFGSELFSENMVEDNMTW 564
T GG+V + SA G A +DD GP + + ++ + G+ S + D +
Sbjct: 244 TPPGGEVAL-SAGTADGQAWARVDDTGPGIAEADLPRIFEVAYRGTAARSP-VAADGVPT 301
Query: 565 NFVAGLTVARELLESY-GCVVRVISPWKTDAALGSGGTRVELWLP 608
GL +A L+E++ G + P GG+R E+ LP
Sbjct: 302 GSGMGLAIAAGLVEAHQGHITAENRP---------GGSRFEVRLP 337
>gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system
[Janthinobacterium sp. Marseille]
gi|151283162|gb|ABR91572.1| sensor kinase of copper sensing two-component system
[Janthinobacterium sp. Marseille]
Length = 458
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
R+AL+NL+ AL T G + I AA AG +V +++DG ++ Q H F
Sbjct: 349 FRRALNNLLSNALRYTPSHGTISIKIKAAQAG-TVVTVENDGKEIPIEIQPHLFDRFYRA 407
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
S E + GL++ R +++++G V V+S G T L+ PS
Sbjct: 408 DKSRKKSESDSAG---LGLSITRAIMQAHGGSVSVVS--------GESKTAFSLYFPS 454
>gi|406896317|gb|EKD40641.1| hypothetical protein ACD_74C00278G0003 [uncultured bacterium]
Length = 468
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P +++ ++ ++ + ++ LA ++ Q + + ++ + V+ LRQA+ NL++ A+ T
Sbjct: 300 QPTDLNALVAEVIDCLQVLAE-EKEQTLIQDDTEPVFAKVDYAILRQAVINLVDNAIKYT 358
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
Q G + +V A DA++ I D+GP +
Sbjct: 359 QPRGGIRVVVRPKAARDAVIEIIDNGPGI 387
>gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus fervens AG86]
gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus fervens AG86]
Length = 632
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 38/174 (21%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALM 505
I+ + D++ D+ ++ P ++++ +E+ E+ ++L V++ + Q L NLIE A+
Sbjct: 483 IKDVKIKDMVVDVLNSLGP--QIKEKNIEIKCEIEENLTAKVDKDRITQVLINLIENAIK 540
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGP-----------DMHYMTQMHSLTPFGSELFS 554
+ V G +EI A A ++I D GP D Y + G+ L
Sbjct: 541 FSPVKGVIEI-HAFRDNNYAHIIIKDYGPGIPKKDLDKIFDKFYQVNFPKIKKDGAGL-- 597
Query: 555 ENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL + + ++E++G + W ++ LG GT + LP
Sbjct: 598 --------------GLAICKSIIEAHGGKI-----W-VESELGK-GTSFHVLLP 630
>gi|298715823|emb|CBJ28288.1| Two component sensor histidine kinase [Ectocarpus siliculosus]
Length = 480
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 264 DHERMRVYKFSADQRLNAINICRSLAMAYVMDQK---SMLLQQSSWQNNARMSNLVEQIR 320
D E RV D+RL I RS+ +A V+DQK + ++Q + S + Q++
Sbjct: 139 DIENARVLWGERDKRLLE-TIARSVGVAAVLDQKQRWAAVMQVEPLRKVVAES--LHQVK 195
Query: 321 GPLSSIQTLSKMLSLHMKRSE-ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379
P+++++T K+L + + + ++ ++ +DI++Q DRL L + + L + R
Sbjct: 196 NPMTALRTFGKLLLRRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERER 255
Query: 380 EETLKKMNNSAYSHP 394
E + + ++ S P
Sbjct: 256 EAQMPGVQDALLSPP 270
>gi|194289105|ref|YP_002005012.1| sensor histidine kinase in two-component regulatory system wtih
kdpe, regulation of potassium translocation [Cupriavidus
taiwanensis LMG 19424]
gi|193222940|emb|CAQ68945.1| sensor histidine kinase in two-component regulatory system wtih
KdpE, regulation of potassium translocation [Cupriavidus
taiwanensis LMG 19424]
Length = 952
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V +++G A+R ++ +V +++LSQ L+ + + + L NL+E A T G
Sbjct: 790 SVEELVGSSLAAMRE--ALEHHRVIVADLSQVPLIECDAVLVERVLCNLLENASKYTPAG 847
Query: 511 GKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
++ I S AP D + +V++DDGP + + E F+ E + T G
Sbjct: 848 TEIRISS--APVEDEIRIVVEDDGPGVPKGKERQIF-----EKFTRGERE-SATAGVGLG 899
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
L V +++++G + V + + D G G R + LP P
Sbjct: 900 LAVCEAIVQAHGGRIWVEAAQRPDRPDGQAGARFVVALPRGNP 942
>gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1242
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA--LRQALSNLIEGALM 505
RP ++ V+ + E ++P A + + + ++ + + +V A L+Q NL+ A+
Sbjct: 943 RPVSLISVITEAIETLKPQA--EAKDITINCMLDRYVSSVSGDASRLQQVAWNLLSNAIK 1000
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
T GG+VE+ S A DAL+ + D G + P+ E F + T+
Sbjct: 1001 FTPSGGQVEV-SLQAVGTDALLQVKDTGNGIK-----ADFLPYIFERFRQADASTTRTYG 1054
Query: 566 FVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
+ GL + R L+E +G V SP LG G T
Sbjct: 1055 GLGLGLAIVRHLVEMHGGTVEADSP-----GLGLGAT 1086
>gi|399074351|ref|ZP_10750963.1| signal transduction histidine kinase [Caulobacter sp. AP07]
gi|398040531|gb|EJL33635.1| signal transduction histidine kinase [Caulobacter sp. AP07]
Length = 448
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 484 LVAVEEP-ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM 542
L A+ P A ++AL+NLI+ A G V + S A P+G + +DDDGP +
Sbjct: 336 LSAILRPQAFKRALANLIDNAAAH---GETVRVSSMARPSGGVWIFVDDDGPGIPDALHE 392
Query: 543 HSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
+ PF S N E + GL +AR++ G
Sbjct: 393 EAFRPFNRLDESRNQNEKGVG----LGLAIARDMARGLG 427
>gi|198276200|ref|ZP_03208731.1| hypothetical protein BACPLE_02389 [Bacteroides plebeius DSM 17135]
gi|198271012|gb|EDY95282.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides plebeius DSM 17135]
Length = 842
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEE 489
+M + P+A P ++L D++ + PLA +Q Q++ E L ++L + +
Sbjct: 399 KMDLHPVAFNP-----------HELLTDIYNSFLPLAEKKQLQLDFKEKLPEALTLEGDP 447
Query: 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPF 548
+RQ + NL+ AL T GG I A G+ V + D G M Q F
Sbjct: 448 FRIRQIVENLLSNALKFTAAGG---ITLQAEYHGNQFVFSVSDTGCGMTASEQERIFKEF 504
Query: 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT-RVELWL 607
+ L S E F GL++ R+L+E ++ ++A G G T +V + L
Sbjct: 505 -TRLSSAQGQE-----GFGLGLSITRKLVE------LLLGRIDIESAPGKGSTFKVSMPL 552
Query: 608 PSPAP 612
PS +P
Sbjct: 553 PSISP 557
>gi|404450736|ref|ZP_11015715.1| PAS/PAC sensor signal transduction histidine kinase [Indibacter
alkaliphilus LW1]
gi|403763639|gb|EJZ24586.1| PAS/PAC sensor signal transduction histidine kinase [Indibacter
alkaliphilus LW1]
Length = 674
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
+++D++ E + +A QQ++++L S++ + V ++ L L NLI AL T+
Sbjct: 523 IHLNDLVSKNLELFQEMA--QQKKIKLNSDIEVEIQVFADQDMLNTVLRNLITNALKFTR 580
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGP--DMHYMTQMHSL 545
GKV ++SA + D +V++ D+G D+ Y+ Q+ L
Sbjct: 581 PHGKV-LISAGSRGEDIIVMVKDNGIGMDIKYLKQLFQL 618
>gi|386827385|ref|ZP_10114492.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386428269|gb|EIJ42097.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 731
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A +E+ + +A+ P+ Q +R VR +AH + +Q+ LL+
Sbjct: 426 ADKVELNLQMIAVEPVCQASLR-------------LVRQMAHKKSQQLHFDMAEIGLLIY 472
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSL 545
+E L+Q L NL+ A+ T + G + + V A + + D G + Q
Sbjct: 473 SDERRLKQILVNLLSNAIKFTPLKGAIGLKVHTNAEQKQIVFTVWDTGIGIAPEDQKKLF 532
Query: 546 TPFGSELFSENMVED-------NMTWNFV----AGLTVARELLESYGCVVRVISPWKTD 593
T F +L E E N+ ++ V ++VA EL +YG V PW+TD
Sbjct: 533 TAF-VQLHKEQNREYEGTGLGLNLVYHLVKLHGGSISVASEL--NYGSHFIVTLPWQTD 588
>gi|315121866|ref|YP_004062355.1| two-component sensor histidine kinase transcriptional regulatory
protein [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 498
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V +E +RQ + NL+ A+ T +GGKV + G + I D+GP +
Sbjct: 361 VWADEKGMRQVILNLLSNAVKFTSIGGKVRVKVGWTAGGGQYISIKDNGPGISEGEMPTV 420
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
L+ FG + E + GL + + ++ ++G R+ S
Sbjct: 421 LSSFGQGSIAIKSAEQGVG----LGLPIVQSIMANHGGQFRIKS 460
>gi|440784699|ref|ZP_20961830.1| two-component system signal transduction histidine kinase
[Clostridium pasteurianum DSM 525]
gi|440218676|gb|ELP57894.1| two-component system signal transduction histidine kinase
[Clostridium pasteurianum DSM 525]
Length = 470
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
N+S + ++ + +P+ M++ + +E++++++V +++ L+Q L NL+ A ++
Sbjct: 321 NLSSEIANIVDTFKPI-FMRKNCMITAEVAENIIVYMDKDNLKQILHNLLSNANNYLEIN 379
Query: 511 GKVEIVSAAAPAGDALVVIDDDG-----PDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
G+V+ VS ++ ++D+G D+ Y+ + + ++ D T
Sbjct: 380 GRVK-VSLFEKKDHIIIEVEDNGIGISEKDLPYIFE---------RFYRSDISRDKNTGG 429
Query: 566 FVAGLTVARELLESYGCVVRV 586
GLT+ + L+E+ G +RV
Sbjct: 430 SGLGLTITKSLVEANGGKIRV 450
>gi|182412192|ref|YP_001817258.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839406|gb|ACB73658.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 695
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM 542
LLV +E +RQALSNL+ AL T GG V++ PAG V + D G +
Sbjct: 441 LLVHADERLIRQALSNLLSNALKFTPAGGAVDLTVEPTPAGGVRVAVRDSGIGIAPEKHA 500
Query: 543 HSLTPF 548
PF
Sbjct: 501 RLFRPF 506
>gi|452995614|emb|CCQ92720.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Clostridium ultunense Esp]
Length = 462
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
N+S+ L D+ +PL + +E S + + + + +++ +Q ++NL+ AL +
Sbjct: 313 NISEELKDILSQFKPLFKKENFLLE-SSIEEDIEIIMDKNRFKQIMNNLLSNALKFLKDR 371
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM-TWNFVAG 569
GKV V+ + ++D+G + PF + F V N T G
Sbjct: 372 GKV-FVTLIREKDQVKITVEDNGIGIK-----EEDLPFLFDRFYRADVSRNKDTGGTGLG 425
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
L++A+ L+E++G + V S + GTR + LP+
Sbjct: 426 LSIAKTLVEAHGGSIYVESEF-------DKGTRFTILLPTDTK 461
>gi|398814805|ref|ZP_10573483.1| putative regulator of cell autolysis [Brevibacillus sp. BC25]
gi|398035893|gb|EJL29119.1| putative regulator of cell autolysis [Brevibacillus sp. BC25]
Length = 1042
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V +E + Q + NL+ A+ T G + + A G A +VI D G M Q
Sbjct: 550 VHADENRVIQIVFNLLHNAVKYTNEG--IISIQAFTKDGRAFIVIHDTGIGMDEDMQKRL 607
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
P+ SE M+E F GL+++++L+E +G + V S ALG G T
Sbjct: 608 FRPYEQASSSETMIEG----GFGLGLSISKQLVELHGGTLDVSS------ALGEGST 654
>gi|443320921|ref|ZP_21049993.1| signal transduction histidine kinase [Gloeocapsa sp. PCC 73106]
gi|442789344|gb|ELR99005.1| signal transduction histidine kinase [Gloeocapsa sp. PCC 73106]
Length = 407
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 91/343 (26%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNN------------ARMSNLVEQIRGPLSSIQTLS 330
I +++A+A ++DQ+ QS ++ N ++++ + Q+R PL++++T
Sbjct: 135 QIAQTIAIACLLDQR-----QSWYEQNLVDMQEIRIVEQTKLADFLHQLRNPLTALRTFG 189
Query: 331 KMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSA 390
K+L + + + IV ++ + + L ++ +K+
Sbjct: 190 KLLLKRLIPGDENQKIVTGLLREAEHL----------------------QDLIKQFETGT 227
Query: 391 YSHPE-SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRP 449
P+ SQ+ ++F +P L L P
Sbjct: 228 RESPQLDSASQVKSSFL---------------------------LPALTL--------EP 252
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL-VAVEEPALRQALSNLIEGALMRTQ 508
N+S V+ + + + L + Q+ L ELS L V AL + L NL++ AL T
Sbjct: 253 VNLSAVVEPILLSAQTLGEAKNIQL-LVELSAVLSPVQGNAQALAEVLQNLVDNALKYTP 311
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM--VEDNMTWNF 566
GGK++I + P G + I D G + + Q +F + V+ N
Sbjct: 312 SGGKIKITTLTKP-GFLGLAIHDTGYGIPHEVQ--------ERIFERHYRGVQANGDIPG 362
Query: 567 VA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL +A++L+E + +ISP GT +WLP
Sbjct: 363 TGLGLAIAKDLIEQMHGSIELISP--NHCEFEDKGTTFIVWLP 403
>gi|339322159|ref|YP_004681053.1| osmosensitive K+ channel histidine kinase KdpD [Cupriavidus necator
N-1]
gi|338168767|gb|AEI79821.1| osmosensitive K+ channel histidine kinase KdpD [Cupriavidus necator
N-1]
Length = 949
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V +++G A+R ++ +V +++LS+ LV + + + L NL+E A T G
Sbjct: 786 SVEELVGASLAAMRE--ALEHHRVVVADLSRVPLVECDAVLIERVLCNLLENAAKYTPAG 843
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
++ + SAAA G+ + ++DDGP + + E F+ E + T GL
Sbjct: 844 TEIRL-SAAAVDGEIRIAVEDDGPGVPKGKERQIF-----EKFTRGERE-SATAGVGLGL 896
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
V +++++G + V + D G G R + LP P
Sbjct: 897 AVCEAIVQAHGGRIWVEPAQRPDRPGGQAGARFLVALPRGNP 938
>gi|381159061|ref|ZP_09868294.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380880419|gb|EIC22510.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 820
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 16/162 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++D++G+ + + Q ++E L + + V + L+Q L NL+ A+
Sbjct: 502 PIALNDLVGECLPMIETQSREHQIRLECGPL-EDMTVLADRVRLKQVLINLLSNAVKYNS 560
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG V + +A AG + + D G + TPF + D
Sbjct: 561 AGGLVRVTAAGTEAGRIRIEVTDTGLGIDNEDIAGLFTPFS------RLARDTDREGTGI 614
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
GL V R L+E+ G + S LG G W+ P
Sbjct: 615 GLAVCRRLIEAMGGTIGATSQ------LGEGSC---FWMELP 647
>gi|381184181|ref|ZP_09892836.1| integral membrane sensor signal transduction histidine kinase
[Listeriaceae bacterium TTU M1-001]
gi|380315927|gb|EIA19391.1| integral membrane sensor signal transduction histidine kinase
[Listeriaceae bacterium TTU M1-001]
Length = 460
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 447 IRPCNVSDVL---GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP ++ ++L D FEA + +++ L +S +L+ +E +RQ ++NL+ A
Sbjct: 311 LRPFHLKNMLCAIRDNFEA-----QYEAQKISLEIISPEILLVADEDKMRQVITNLLANA 365
Query: 504 LMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
L T GKV IV A + ++ + D G + Q H + L+ ++ ++
Sbjct: 366 LKFTPPSGKV-IVQVAENDVEVIIKVMDTGVGIAKEEQEHIF----NRLYRTDLSRATLS 420
Query: 564 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG 599
GL +AR ++ ++ +RV ++ LG G
Sbjct: 421 GGQGIGLAIARAIIRAHKGNIRV------ESELGKG 450
>gi|119487843|ref|ZP_01621340.1| Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119455419|gb|EAW36557.1| Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 470
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 90/414 (21%), Positives = 160/414 (38%), Gaps = 104/414 (25%)
Query: 199 EQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESH 258
EQR V P+++ V+GFLV +S E + P E H
Sbjct: 116 EQRQFVLPLMRDGVVLGFLV-----------------------TSREDRPWTPQ---EQH 149
Query: 259 AIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQN-------NAR 311
I++ H +L A ++D++ QQ Q +
Sbjct: 150 QIQAIAH---------------------TLTTACILDRRFQWFQQQFTQQQQLQAQQHDT 188
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
+ +L+ Q++ PL++++T K+L + + ++ I + I+ + +RL LQ++ D
Sbjct: 189 LHSLMHQLKSPLTAVRTFGKLLLKRLLPEDKNHRIADGILRESNRLEELLQQV-DQTLTL 247
Query: 372 KANIVRYNEETLKKM--NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKD 429
++R + ++ + PES +Q ENS +P
Sbjct: 248 NDELIRLPTSFDPSIIPSSETLTPPESYLTQ-------ENS-------------PSPRTT 287
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVE-LSELSQSL-LVAV 487
++ +P A PL+ ++ VL L + + +A ++R + ++E+ L LV
Sbjct: 288 TQVLLP--ASQPLEATSVK-----AVLEPLIVSAQAIA--EERDLHCIAEIPPQLPLVQA 338
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEI-----VSAAAPAGDALVVIDDDGPDMHYMTQM 542
ALR+ LSNLI+ AL T G + I P+ + I D GP +
Sbjct: 339 HSKALREVLSNLIDNALKYTPAVGCIYIRVHQPPHPNQPSNQLAIAISDTGPGIPQEDLE 398
Query: 543 HSLTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTD 593
H LF T + GL +A++L+E ++V SP D
Sbjct: 399 H--------LFQRGYRGIQATGHIPGTGLGLAIAQDLMEEMQGKIQVFSPVNLD 444
>gi|428303893|ref|YP_007140718.1| histidine kinase [Crinalium epipsammum PCC 9333]
gi|428245428|gb|AFZ11208.1| histidine kinase [Crinalium epipsammum PCC 9333]
Length = 466
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++L+++ ++DQ+ +Q Q + +L+ Q R PL++++T K+L
Sbjct: 158 IAQTLSLSCILDQRRAWFEQRLSQQQRLQAQQRNILDDLIHQFRNPLTALRTFGKLLLKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375
+ + + ++ I+ + DRL+ LQ+ + LT+ N+
Sbjct: 218 LGSGDANREVANSIVRESDRLQEMLQQFDSCLDLTQVNL 256
>gi|145294165|ref|YP_001136986.1| hypothetical protein cgR_0123 [Corynebacterium glutamicum R]
gi|57157980|dbj|BAD83954.1| two-component system sensory transduction histidine kinase
[Corynebacterium glutamicum]
gi|140844085|dbj|BAF53084.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 399
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ ++ V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTVRVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVRRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|336122009|ref|YP_004576784.1| integral membrane sensor signal transduction histidine kinase
[Methanothermococcus okinawensis IH1]
gi|334856530|gb|AEH07006.1| integral membrane sensor signal transduction histidine kinase
[Methanothermococcus okinawensis IH1]
Length = 650
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
N+ +++ ++ + ++PLA ++ + + +++ ++ + Q L+NLIE A+ + V
Sbjct: 504 INLKELVENVVDTLKPLA--DEKNINIIYKINDIIMKGDKDRITQVLTNLIENAIKFSPV 561
Query: 510 GGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GKVEI A G+++ + I D+GP + L + + E +
Sbjct: 562 NGKVEI--QALKEGNSVHIKIIDNGPGI----PKKDLDRIFDRFYQVDSPEKRIKGGSGL 615
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSG 599
GL V + ++E++G + W ++ LGSG
Sbjct: 616 GLAVCKSIIETHGGTI-----W-VESKLGSG 640
>gi|43294863|gb|AAQ90164.2| putative kinase sensor [Xanthomonas campestris]
Length = 484
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 368 LQVSGDERRLQQVLANLLENALRYTHTGGRVRVQAARVPAGVQLIVED 415
>gi|424670657|ref|ZP_18107680.1| hypothetical protein A1OC_04277 [Stenotrophomonas maltophilia
Ab55555]
gi|401070312|gb|EJP78828.1| hypothetical protein A1OC_04277 [Stenotrophomonas maltophilia
Ab55555]
Length = 467
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVVED 398
>gi|395649348|ref|ZP_10437198.1| sensor kinase protein [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 438
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 494 QALSNLIEGAL----MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+AL NL+ A R QVG KV P G + +DDDG + + PF
Sbjct: 330 RALQNLLRNATRYCEKRIQVGVKV------CPKG-CEIWVDDDGIGIPPDQRERIFEPF- 381
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ + D T F GL ++R +E+ G + T A GG R LWLP+
Sbjct: 382 ---YRLDRSRDRTTGGFGLGLAISRRAVEAQGGTL-------TAVASPLGGARFRLWLPT 431
Query: 610 PAP 612
AP
Sbjct: 432 RAP 434
>gi|354586582|ref|ZP_09004987.1| multi-sensor signal transduction histidine kinase [Paenibacillus
lactis 154]
gi|353180774|gb|EHB46318.1| multi-sensor signal transduction histidine kinase [Paenibacillus
lactis 154]
Length = 769
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V +L D+ + AH+ +V+L S+ LV EE L+Q NL++ A G
Sbjct: 615 DVRGILRDVISFLDSQAHLYGVEVKLDFSSEPALVHCEENQLKQVFINLLKNAFEAMPDG 674
Query: 511 GKVEIVSAAAPAGD-ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
G V I + P GD L+ I D+G + H PF + N G
Sbjct: 675 GTVTI-TLKRPEGDHVLITIQDEGHGIPEELMPHLGEPFIT----------NKETGTGLG 723
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPAPLSDLNGKSNE 622
L V++ +++ + + + S SG GT++ + LP+ A SD+ SN+
Sbjct: 724 LMVSQRIIQGHQGTLEIESK--------SGVGTKISIVLPA-ARQSDMEASSND 768
>gi|5764627|gb|AAD51347.1|AF173226_4 SmeS [Stenotrophomonas maltophilia]
Length = 467
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVVED 398
>gi|418244074|ref|ZP_12870500.1| hypothetical protein KIQ_01145 [Corynebacterium glutamicum ATCC
14067]
gi|354511870|gb|EHE84773.1| hypothetical protein KIQ_01145 [Corynebacterium glutamicum ATCC
14067]
Length = 399
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ ++ V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTVRVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|254253264|ref|ZP_04946582.1| regulatory protein GntR [Burkholderia dolosa AUO158]
gi|124895873|gb|EAY69753.1| regulatory protein GntR [Burkholderia dolosa AUO158]
Length = 293
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLL 484
I MP+ P + P+K P V+D + D EA V P+ + Q +LSE Q
Sbjct: 52 ITMPVRPAIVHPMKNV---PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEELQ--- 105
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
+ +LR+ALS L ++R + G V + SA A A + P Y + ++
Sbjct: 106 --ISRASLREALSTLEALGMLRIRAGKGVYVESAQATVAHAWRFAEQSSPPDTYQMR-YA 162
Query: 545 LTPFGSELFSENMVEDNMTW 564
L F + + + + +D++ W
Sbjct: 163 LEGFAARMTAHVVTDDDIAW 182
>gi|357037322|ref|ZP_09099122.1| histidine kinase [Desulfotomaculum gibsoniae DSM 7213]
gi|355361487|gb|EHG09242.1| histidine kinase [Desulfotomaculum gibsoniae DSM 7213]
Length = 433
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 23/167 (13%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V+D+L ++ E + P+ M V + + + SL + ++ + N++E AL G
Sbjct: 288 DVNDLLDEVLETLGPI--MDPDVVVVKDYAPSLKLYLDREKMHAVFGNIMENALDAMPGG 345
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA-G 569
G++ I++ G + ++++D G + Q PF S N V G
Sbjct: 346 GRLRIITTEG-QGRSFIIVEDSGLGLAKEIQHAIFEPFVSA-----------KANGVGLG 393
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL 616
LTV ++++ES+G + + S K GT V + +P P SD+
Sbjct: 394 LTVCKKVVESHGGKIMLRSNGK--------GTAVCIDMPLSQPGSDV 432
>gi|404497281|ref|YP_006721387.1| sensor histidine kinase response regulator, HAMP domain-containing,
putative heme-binding site [Geobacter metallireducens
GS-15]
gi|418065827|ref|ZP_12703197.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
RCH3]
gi|78194884|gb|ABB32651.1| sensor histidine kinase response regulator, HAMP domain-containing,
putative heme-binding site [Geobacter metallireducens
GS-15]
gi|373561625|gb|EHP87856.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
RCH3]
Length = 827
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 25/181 (13%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA--------LRQALSNL 499
R +SD +L V L + + E +S S+LV E P LRQ L+NL
Sbjct: 392 RRLELSDEALELRSFVESLRRLFAVKAERENISLSILVGDEAPQFICGDPARLRQVLTNL 451
Query: 500 IEGALMRTQVGGKVEIVSAAAPA-GDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMV 558
+ A+ T GG+V + + A PA G+ L + D G + E+F +
Sbjct: 452 LSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGIEKDKHERIF-----EMFRQ--A 504
Query: 559 EDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL-PSPAPLS 614
+ + T N+ GL + R L+E G + V S A RV L L P+ P +
Sbjct: 505 DSSTTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAVF-----RVLLPLRPATGPPA 559
Query: 615 D 615
D
Sbjct: 560 D 560
>gi|270308800|ref|YP_003330858.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
gi|270154692|gb|ACZ62530.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
Length = 392
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
P N+ ++L D+ E +RP+ +++ +S L SL +V + L+Q + NL++ A T
Sbjct: 241 PLNIYELLKDVEEIIRPVFESNAQKLTIS-LQNSLPVVVADYKRLKQVILNLLDNATKYT 299
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GG + + SAAA ++ + D+G M
Sbjct: 300 PLGGDIRL-SAAASNKYLVIEVKDNGKGM 327
>gi|339499361|ref|YP_004697396.1| integral membrane sensor signal transduction histidine kinase
[Spirochaeta caldaria DSM 7334]
gi|338833710|gb|AEJ18888.1| integral membrane sensor signal transduction histidine kinase
[Spirochaeta caldaria DSM 7334]
Length = 455
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 44/330 (13%)
Query: 266 ERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSS 325
ER Y + L +I S+ +A + + ++L+Q++ + A +L +RG
Sbjct: 147 ERFIQYGLISLLTLLIFSITMSIIIANSITKSVLILEQATRRIAAGELDLEVAVRGS--- 203
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
+++ SL + + D+ EDI+ + + G +L+ + L K Y E
Sbjct: 204 ----NEITSLTSSLNRMRLDLKEDIIRRSRFIMGISHDLKTPLALIKG----YTEAIRDG 255
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
+ + S +I LS E + L + + + + IE P P A K+
Sbjct: 256 ITDDQASKSRAIDIILSKVEQLEGMIDDLMDFVRMDTSEWQQHLIEQPFLPFLYAFCKRV 315
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGAL 504
I A + R+V + + V + E + +AL NLI AL
Sbjct: 316 SID------------------AQLLHREVAFDLNIPEHTQVKMNEALITRALENLISNAL 357
Query: 505 MRTQVGGKVEIVSA----AAPAGDALVVIDDD--GPDMHYMTQMHSLTPFGSELFSENMV 558
T+ GGKV+I + A LV I D+ G D + ++ L G + +
Sbjct: 358 RYTREGGKVQITAQLENRAMNKSAILVTITDNGIGIDQEDLDRIFELFYRG----TNSRR 413
Query: 559 EDNMTWNFVAGLTVARELLESYGCVVRVIS 588
E M GL+V + +++S+G + V S
Sbjct: 414 EAGMG----IGLSVVKSIIDSHGWKISVFS 439
>gi|295112251|emb|CBL29001.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
gyrase B-, and HSP90-like ATPase./HAMP domain.
[Synergistetes bacterium SGP1]
Length = 513
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++S L + +A RPL + S L+ SL V+E R + NL+ AL T
Sbjct: 340 PVDLSAFLSSVLDAFRPLFGRTGVALRRS-LAPSLHAEVDEDRFRHVMDNLLSNALRYTP 398
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG VE V +A++ + D G + H F + + +T
Sbjct: 399 KGGWVE-VRLRRRGDEAVIEVQDSGSGISPQDLPHVFDRF----YRADESRARVTGGRGV 453
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGS 598
GL++AR ++E++G + V ++++ +GS
Sbjct: 454 GLSIARAVVEAHGGTIGV----ESESGVGS 479
>gi|429887473|ref|ZP_19368990.1| putative two-component system sensor histidine kinase (Pho family)
[Vibrio cholerae PS15]
gi|429225464|gb|EKY31714.1| putative two-component system sensor histidine kinase (Pho family)
[Vibrio cholerae PS15]
Length = 465
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S+V+ ++ +A ++ ++E +++S L++ + L Q L NL++ A+ T+
Sbjct: 315 PTNLSEVVHNVASWYEDVAEEKEIKLE-TQVSDGLIIVSDPDKLVQVLVNLVDNAIKYTE 373
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE-DNMTWN-- 565
G V I + GDA++ + D G + P +L E + DN N
Sbjct: 374 PKGYVLIKAERVTDGDAVIQVTDTGI---------GIDPKYHDLVFERLYRVDNSRSNIG 424
Query: 566 -FVAGLTVARELLESYGCVVRVISPWKTDAALGS 598
+ GL+ A ++E+ G + + K+D +GS
Sbjct: 425 GYGLGLSFAAAIIENIGGTISL----KSDVGVGS 454
>gi|338532908|ref|YP_004666242.1| sensor histidine kinase [Myxococcus fulvus HW-1]
gi|337259004|gb|AEI65164.1| sensor histidine kinase [Myxococcus fulvus HW-1]
Length = 464
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 466 LAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525
LA + R VE + ++L V L QALSNL+ A+ + GG V V G
Sbjct: 324 LARLLGRTVECARPDEALWVRCNPTMLEQALSNLLHNAVTHGEAGGHVVAVLEDVEPGRF 383
Query: 526 LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
+ + DDGP + L G F T GL++ REL G
Sbjct: 384 RLTVLDDGPGL----PPGDLERLGERGFRAQATRRRATRGSGLGLSIVRELCHRVG 435
>gi|383458509|ref|YP_005372498.1| sensor histidine kinase [Corallococcus coralloides DSM 2259]
gi|380735230|gb|AFE11232.1| sensor histidine kinase [Corallococcus coralloides DSM 2259]
Length = 534
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 47/192 (24%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV-------------- 487
L++ IR + D++ DL +AVRPL + R V L EL L +
Sbjct: 364 LEEEAIR---LEDIVRDLLDAVRPL-EPRPRPVSLGELVHRALAQLLHGREELPKPRVAF 419
Query: 488 -----------EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+E L+ A+++L+ A+ + GG V + P G +LVV +D+GP +
Sbjct: 420 DEAPDVPELSGDETLLQLAVTHLMRNAIQASPSGGTVRVAVRRVPDGVSLVV-EDEGPGI 478
Query: 537 HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAAL 596
+ PF F + GL + R ++ ++G VR A
Sbjct: 479 AGLDPQRVFEPF----FLTRANGRGL------GLAIVRRVVLAHGGKVRA-------GAR 521
Query: 597 GSGGTRVELWLP 608
GG R EL LP
Sbjct: 522 PEGGARFELVLP 533
>gi|150391004|ref|YP_001321053.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
gi|149950866|gb|ABR49394.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
Length = 458
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I N++ +L +L R A Q +ELS ++ + + + L+QAL N+I +
Sbjct: 304 IEKINLNRLLDELVMITRKFAEQQDVAIELSNMNDAYEIEGDSDKLKQALINIILNGIQA 363
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
+ GG++EI ++++ D+G + PF
Sbjct: 364 MEQGGRLEISLKKTEKEESVITFKDEGRGIEKRIVDQIFNPF 405
>gi|325961693|ref|YP_004239599.1| signal transduction histidine kinase [Arthrobacter
phenanthrenivorans Sphe3]
gi|323467780|gb|ADX71465.1| signal transduction histidine kinase [Arthrobacter
phenanthrenivorans Sphe3]
Length = 547
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P + L + A+RPLA +Q + + + + + +E L+Q +NL+ A+
Sbjct: 384 LTPVRLGQTLDLVAAALRPLATLQNVTIAVEPVPEDPEILADEVQLQQVFTNLVSNAIKF 443
Query: 507 TQVGGKVEIVSAAAPAGD----ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
T GG++E+ S + A D A V + D G + H T F + N + +
Sbjct: 444 TPSGGRIEVGSESHAAADGTRWATVSVADTGIGISSDEIHHVFTRF---YRASNAMAGAI 500
Query: 563 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+ GL + ++++ +G + V S LGS GT V + LP
Sbjct: 501 PGTGL-GLAITKDIVSRHGGRIDVSS------TLGS-GTTVTVSLP 538
>gi|262196308|ref|YP_003267517.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262079655|gb|ACY15624.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 540
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ V+ D E+V L + ++ + + + L V + L Q + NL+ A T+
Sbjct: 252 PVDIASVVADALESVSSLVNARKHTLVCEPIVERLEVFGDRTRLEQVIVNLVANAANYTE 311
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG++E+ SA V + D G + H PF V + +
Sbjct: 312 PGGRIEL-SARREGEHIRVAVVDTGVGIDAADIEHIFEPFAQ-------VGEAGSGGLGI 363
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP----SPAP 612
GLT+ R+L+E +G V S G G GT + LP PAP
Sbjct: 364 GLTLVRQLVELHGGTVEAESG-------GHGQGTTFRVSLPQGGEQPAP 405
>gi|410614182|ref|ZP_11325232.1| two-component system, OmpR family, heavy metal sensor histidine
kinase CusS [Glaciecola psychrophila 170]
gi|410166222|dbj|GAC39121.1| two-component system, OmpR family, heavy metal sensor histidine
kinase CusS [Glaciecola psychrophila 170]
Length = 459
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ +S V+ ++ + P+A + +EL +++ V V+E L + NL+E A+
Sbjct: 315 VSTFKLSYVVKNVCSHIAPIAIDKNHDLELVVENENSTVDVDEGELTVIVKNLLENAIKH 374
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
T GGK+++ + L+ ++D G + + F + EN + +
Sbjct: 375 TSAGGKIKV-----TVSNKLITVEDSGNGIPEVFHQQIFERF----WRENQSDRKGSG-- 423
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 606
GL + +EL+ Y +RV D+ G VE +
Sbjct: 424 -LGLAITKELVSHYNASIRV----SNDSTFGGAKFAVEFY 458
>gi|337269633|ref|YP_004613688.1| integral membrane sensor signal transduction histidine kinase
[Mesorhizobium opportunistum WSM2075]
gi|336029943|gb|AEH89594.1| integral membrane sensor signal transduction histidine kinase
[Mesorhizobium opportunistum WSM2075]
Length = 450
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 21/157 (13%)
Query: 458 DLFEAVRPLAHMQQ-----RQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
DL EA R + Q R ++L E + + V + LR+ + NL++ AL + VGG
Sbjct: 307 DLAEAARHVLETQAPTAIARNIDLGLEEAGPVPVTGDGTMLREMIVNLVDNALRYSPVGG 366
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+V VS AA G+A++ + D+GP + + H F V + GL
Sbjct: 367 RVT-VSLAALDGEAVLTVADNGPGIPADEREHVFERF-------YRVAGSSEQGSGLGLA 418
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+ RE++E+ G V + D A +GG VE+ LP
Sbjct: 419 IVREVVENAGGRVTL-----GDGA--AGGLVVEVRLP 448
>gi|194367611|ref|YP_002030221.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia R551-3]
gi|194350415|gb|ACF53538.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia R551-3]
Length = 463
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHTGGRVRVQAARVPAGVQLIVED 394
>gi|388567334|ref|ZP_10153768.1| histidine kinase [Hydrogenophaga sp. PBC]
gi|388265356|gb|EIK90912.1| histidine kinase [Hydrogenophaga sp. PBC]
Length = 499
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + DVL E PL + + + ++V + L Q SNL+ A T
Sbjct: 209 PVAMQDVLRHAVELSLPLIDAHAHHLTMDIPDERVVVHGDSVRLTQVFSNLLNNAAKYTP 268
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMTQMHSLTPFGSELFSE-NMVEDNMT 563
GG++ + A A A V + D+G PDM +LF + N
Sbjct: 269 RGGELALSLQHADA-QARVTVSDNGPGIPPDMREAV---------FDLFVQVNDASRAAQ 318
Query: 564 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 614
GLT+ R L+E +G V K D+A G+GGTR+ + LP L+
Sbjct: 319 GGLGIGLTLVRSLVELHGGTV------KADSAGGTGGTRMVVRLPWAGTLA 363
>gi|407688920|ref|YP_006804093.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407292300|gb|AFT96612.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 943
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P NV ++LG E ++PL +Q + + ++++ + V + L Q SN+I A T
Sbjct: 645 KPVNVCEILGTAIETIQPLIDEKQHTLLVEKVAEPVWVNGDLIRLSQIFSNIINNAAKYT 704
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG 533
GG +E+ + G + + D+G
Sbjct: 705 PPGGNIEVCISTCD-GKVTIAVKDNG 729
>gi|398905389|ref|ZP_10652814.1| signal transduction histidine kinase [Pseudomonas sp. GM50]
gi|398174635|gb|EJM62425.1| signal transduction histidine kinase [Pseudomonas sp. GM50]
Length = 433
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+AL NL+ A+ + +++I P G + +DDDG + + PF +
Sbjct: 330 RALQNLLRNAMRYCE--KRIQIGVQVCPKG-CEIWVDDDGIGIPEEERERIFEPF----Y 382
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611
+ D T F GL ++R LE+ G + T GG R LWLP+PA
Sbjct: 383 RLDRSRDRATGGFGLGLAISRRALEAQGGTL-------TAQPSPLGGARFRLWLPTPA 433
>gi|154253689|ref|YP_001414513.1| integral membrane sensor signal transduction histidine kinase
[Parvibaculum lavamentivorans DS-1]
gi|154157639|gb|ABS64856.1| integral membrane sensor signal transduction histidine kinase
[Parvibaculum lavamentivorans DS-1]
Length = 377
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 463 VRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA 522
VR LA Q+ + + S + E +RQ L N++ A+ T+ GG V + + P
Sbjct: 222 VRSLAERQEISLSTAAAETSAYLVGVERMVRQVLINVLSNAIKFTERGGSVTVAAEHRPN 281
Query: 523 GDALVVIDDDGPDMHYMTQMHSLTPFG 549
G+ +V I D G M +LTPFG
Sbjct: 282 GNLVVSISDTGIGMSPDEVKVALTPFG 308
>gi|434388986|ref|YP_007099597.1| histidine kinase [Chamaesiphon minutus PCC 6605]
gi|428019976|gb|AFY96070.1| histidine kinase [Chamaesiphon minutus PCC 6605]
Length = 467
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 115/298 (38%), Gaps = 61/298 (20%)
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++I+T K+L ++ E I+ + DRL+ L L++A+ L +
Sbjct: 213 PLTAIRTFGKLLIKRLQLGETDGGFANSIVRESDRLQELLIHLENAIDLPLIKDEDSKSD 272
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
+K + +S Q N S N + +P A
Sbjct: 273 WIKPLPSS----------QQEANVSNAN----------------------LLLPDAAFR- 299
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
+ C ++DVL L + +A Q R + + + + L LV ALR+ LSNL
Sbjct: 300 -----VESCQLTDVLDPLITSAEAIA--QDRNLTFYTHIPRDLPLVQAHPAALREVLSNL 352
Query: 500 IEGALMRTQVGGK----VEIVSAAAPAGDA------LVVIDDDGPDMHYMTQMHSLTPFG 549
I+ AL T GG+ VE+V+ A DA + I D G + L
Sbjct: 353 IDNALKYTPTGGEVDVDVELVATAIDLADAPQPARIQICIRDTGVGI----PAQDLDKLF 408
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
+ + + ++ + GL +A+EL+ + V SP G GT LWL
Sbjct: 409 TRHYRGVQAQGSIAGTGL-GLAIAKELVTHMNGKLEVASP----PPGGDRGTEFMLWL 461
>gi|68536517|ref|YP_251222.1| two-component system sensor kinase TcsS4 [Corynebacterium jeikeium
K411]
gi|260577650|ref|ZP_05845586.1| two component system sensor kinase TcsS4 [Corynebacterium jeikeium
ATCC 43734]
gi|68264116|emb|CAI37604.1| two-component system sensor kinase TcsS4 [Corynebacterium jeikeium
K411]
gi|258604196|gb|EEW17437.1| two component system sensor kinase TcsS4 [Corynebacterium jeikeium
ATCC 43734]
Length = 375
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q LSNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVLSNLLSNALRHTPAGGQVRISVHRQGASTALIQVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSQDNAGAGIGLTISKALIEAHGGTLTATSP 351
>gi|375259287|ref|YP_005018457.1| phosphate regulon sensor protein [Klebsiella oxytoca KCTC 1686]
gi|397656268|ref|YP_006496970.1| phosphate regulon sensor protein PhoR [Klebsiella oxytoca E718]
gi|402843134|ref|ZP_10891536.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. OBRC7]
gi|423101552|ref|ZP_17089254.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5242]
gi|365908765|gb|AEX04218.1| phosphate regulon sensor protein [Klebsiella oxytoca KCTC 1686]
gi|376391340|gb|EHT04019.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5242]
gi|394344878|gb|AFN30999.1| Phosphate regulon sensor protein PhoR (SphS) [Klebsiella oxytoca
E718]
gi|402277765|gb|EJU26833.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. OBRC7]
Length = 429
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
QQRQV + +SL V E LR A+SNL+ A+ T G + + AP G AL +
Sbjct: 296 QQRQVLHFSVDESLKVLGNEEQLRSAISNLVYNAVNHTPPGTDITVSWQRAPHG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>gi|340788024|ref|YP_004753489.1| two-component system sensor protein [Collimonas fungivorans Ter331]
gi|340553291|gb|AEK62666.1| two-component system sensor protein [Collimonas fungivorans Ter331]
Length = 634
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELS--QSLLVAVEEPALRQALSNLIEGAL 504
++P ++ +L + V PLA QR++ L +L + L V + L Q L NL+ A+
Sbjct: 339 VQPIQLASLLAEALTLVAPLA--AQRKIHLDQLVCPEQLAVLADRQRLMQVLLNLLSNAI 396
Query: 505 MRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
G+V I AA GD + V I+DDGP + TPF L +E +
Sbjct: 397 KYNSPNGQVRIQVAA--YGDTVSVAIEDDGPGLSADLTERLFTPF-DRLGAERGTSEGAG 453
Query: 564 WNFVAGLTVARELLES-YGCVV 584
GL V++ L+++ +G ++
Sbjct: 454 L----GLAVSKSLMQAMHGDII 471
>gi|445496910|ref|ZP_21463765.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Janthinobacterium sp.
HH01]
gi|444786905|gb|ELX08453.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Janthinobacterium sp.
HH01]
Length = 740
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS--ELSQSLLVAVEEPALRQALSNLIEGALMR 506
P NV+DV+ D E PL +Q + EL+ E+ Q VA + L Q L N++ A
Sbjct: 448 PLNVADVVADAVEQAEPLFQTKQHRFELTLPEVPQQ--VAGDHKRLVQVLVNVLNNAAKY 505
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T VGG +++ + AG +V+ D G M
Sbjct: 506 TPVGGTIKL-AVRGEAGLVRLVVSDSGIGM 534
>gi|347736804|ref|ZP_08869353.1| signal transduction histidine kinase [Azospirillum amazonense Y2]
gi|346919588|gb|EGY01060.1| signal transduction histidine kinase [Azospirillum amazonense Y2]
Length = 468
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 451 NVSDVLGDLFEAVRPL-AHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIEGALMRTQ 508
V D+ ++ AVR + A QR+++++ + L A+ +P ALRQ L NL+ A+ T
Sbjct: 305 KVVDIAAEVAVAVRQIQAGNLQRKIDITVAGVAGLHAMLDPTALRQVLLNLLGNAVKFTP 364
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM-HYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG+V + + G AL VI D GP + Y+ + PF L +E + + +
Sbjct: 365 DGGRVTVSADIRREGLALSVI-DTGPGISRYVLENLGTQPF---LQAEPSLRRRHGGSGL 420
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL + R L+E +G + V P GGTRV + P
Sbjct: 421 -GLFIVRRLMELHGGSLLVECP-------PGGGTRVTVIFP 453
>gi|255034368|ref|YP_003084989.1| histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254947124|gb|ACT91824.1| histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 1327
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+++D+L D+F RP A +Q Q +L +L V+E A ++ SNL+ A+ +
Sbjct: 900 TDINDLLNDVFATFRPAAEQKQLQYKLELPRITLQAFVDEEACKKITSNLVSNAIKYAES 959
Query: 510 GGKVEIVSAAAPAGDALVVID--DDGPDMHYMTQMHSLTPF 548
KV++ + + D L I+ +DGP + Y + PF
Sbjct: 960 SVKVKL--SPFNSDDLLFHIEFTNDGPLIGYDDRDRIFEPF 998
>gi|157960115|ref|YP_001500149.1| histidine kinase [Shewanella pealeana ATCC 700345]
gi|157845115|gb|ABV85614.1| histidine kinase [Shewanella pealeana ATCC 700345]
Length = 885
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAG--DALVVIDDDGPDMHYMTQ 541
L++++E +RQ L NL+ A+ T GG +VS+ A D ++ I D G + Q
Sbjct: 491 LISLDEHRMRQVLMNLLSNAVKFTHEGGIRVVVSSKNTADYCDMIISIYDSGIGIAKEKQ 550
Query: 542 MHSLTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRV 586
+ +PF E +D T F GL + ++L+E G + +
Sbjct: 551 QYIFSPFTQE-------DDTTTREFGGTGLGLAICKQLVELMGGEISI 591
>gi|390630653|ref|ZP_10258631.1| Two-component system histidine kinase, sensor protein, phosphate
transport regulon [Weissella confusa LBAE C39-2]
gi|390484120|emb|CCF30979.1| Two-component system histidine kinase, sensor protein, phosphate
transport regulon [Weissella confusa LBAE C39-2]
Length = 456
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
+A P +Q P +SD++ D+F++ A QQ ++ +E++ S V + LRQ L
Sbjct: 296 IAKVPERQETPTPIKLSDMVNDIFKSQAENADKQQLTLQ-NEVAPSFTVTQDATVLRQIL 354
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+NLI A+ + G V+ VSA A + +V + D G
Sbjct: 355 TNLIVNAVKYNRHDGLVK-VSAMVTASEFVVAVKDTG 390
>gi|423118904|ref|ZP_17106588.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5246]
gi|376399550|gb|EHT12164.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5246]
Length = 431
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
QQ+Q + ++L+V E LR A+SNL+ A+ T G ++ + AP G AL +
Sbjct: 296 QQKQTLHFHVDETLVVLGNEEQLRSAISNLVYNAINHTPAGTEITVSWQRAPHG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>gi|406990053|gb|EKE09748.1| hypothetical protein ACD_16C00116G0003 [uncultured bacterium]
Length = 439
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQR-QVELSELSQSLLVAVEEPALRQALSNLIE 501
+ G+ + +D+ L +A++ +HM ++ E LS + ++ AL++ L+NLI
Sbjct: 289 RGEGLEETSETDMNALLLDAIQGRSHMNKKVHYESQPLSH---LHIKPQALKRCLTNLIN 345
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
A T+ G +V I +A + + L+ ++DDGP + PF F + +
Sbjct: 346 NA---TRYGQEVWI-NARSNSESLLISVEDDGPGIPQDKMEEVFKPF----FRLDRSRNV 397
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
T GLT+AR++ S+G + + + GG + L LP
Sbjct: 398 STGGVGLGLTIARDIARSHGGDIHL------SKSKAHGGLCMSLILP 438
>gi|374334400|ref|YP_005091087.1| integral membrane sensor signal transduction histidine kinase
[Oceanimonas sp. GK1]
gi|372984087|gb|AEY00337.1| integral membrane sensor signal transduction histidine kinase
[Oceanimonas sp. GK1]
Length = 456
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAP-AGDALVVIDDDGPDMHYMTQMHSLTPFG 549
AL QA+ N++ AL T G +V + A P +G + IDD GP + H PF
Sbjct: 339 ALGQAIENILRNALHHTPPGKQVTL--ALQPQSGGYCLTIDDQGPGVPDEHLDHIFQPF- 395
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
F + + T F GL +AR LE+ G V+ + GG R+ + LP
Sbjct: 396 ---FRLDAARRDETSGFGLGLALARRQLEATGGRVKA-------SNRAEGGLRMSIRLP 444
>gi|392408182|ref|YP_006444790.1| signal transduction histidine kinase [Anaerobaculum mobile DSM
13181]
gi|390621318|gb|AFM22465.1| signal transduction histidine kinase [Anaerobaculum mobile DSM
13181]
Length = 456
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 412 NKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQ 471
N L+ + + L ++ KD+ + +L L ++P +++++L L E + L+ +
Sbjct: 271 NLLRLNHQVLRMERLVKDL---LDMSSLETLSGLDLKPVHLTELLSALIEDYQLLSDARS 327
Query: 472 RQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531
+E++ L ++L V +E LR+A SNL++ A+ + GG++ I A + +V+I +
Sbjct: 328 ITMEVN-LPENLWVKGDEEKLRRAFSNLLDNAIKYNEDGGQIAI-RAEREVAETVVIIKN 385
Query: 532 DGP 534
GP
Sbjct: 386 TGP 388
>gi|359792830|ref|ZP_09295624.1| PAS sensor protein [Mesorhizobium alhagi CCNWXJ12-2]
gi|359251023|gb|EHK54433.1| PAS sensor protein [Mesorhizobium alhagi CCNWXJ12-2]
Length = 1207
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+++D L + ++P A+ ++ + S S+ V + ++RQ N++ A+ TQ
Sbjct: 1053 VSLNDTLAETVAMMQPQANRERVIIRSSFASKLPEVVADLRSIRQIALNILSNAVRYTQA 1112
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
GG+V I +A P+GD ++ + D G M + +L PF
Sbjct: 1113 GGQVIISTAYEPSGDIVMRVRDTGVGMSHAEIEQALKPF 1151
>gi|340620094|ref|YP_004738547.1| two-component system-sensor histidine kinase [Zobellia
galactanivorans]
gi|339734891|emb|CAZ98268.1| Two-component system-Sensor histidine kinase [Zobellia
galactanivorans]
Length = 497
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
+ P+K+ P +++++ DL R LA +Q +++L ++ +V + + +AL N
Sbjct: 342 VTPVKE----PFSITELSHDLIAKFRVLAEQKQIELQLDNPQENCMVFADVSLVERALQN 397
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMV 558
LIE AL TQ GKV + S + + I D G + Q PF + + + V
Sbjct: 398 LIENALKYTQANGKVTL-SLQKKGKNVEINITDTGTGIPVNEQ-----PFIFDRYKQ--V 449
Query: 559 EDNMTWNFVA-GLTVARELLESYGCVVRVISPWKTDAAL 596
+ + + V GL + +++++ + + V+S K ++
Sbjct: 450 DKSAKKHGVGLGLAIVKKIMDLHDTTITVLSKPKEGSSF 488
>gi|405372584|ref|ZP_11027659.1| Chemotaxis regulator [Chondromyces apiculatus DSM 436]
gi|397088158|gb|EJJ19155.1| Chemotaxis regulator [Myxococcus sp. (contaminant ex DSM 436)]
Length = 368
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
VA EE LRQ L NL AL T GG+V + SA G + +DD GP + +
Sbjct: 260 VAGEEERLRQVLINLCLNALEATPSGGQVTL-SAGQEGGRVWLTVDDSGPGVPQAVRDRI 318
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVE 604
PF F+ + GL++ ++ +G + V DAA G GG R
Sbjct: 319 FEPF----FTTKAQGSGL------GLSIVHAIVTQHGGSLEV------DAAPG-GGARFV 361
Query: 605 LWLP 608
L LP
Sbjct: 362 LRLP 365
>gi|284046157|ref|YP_003396497.1| integral membrane sensor signal transduction histidine kinase
[Conexibacter woesei DSM 14684]
gi|283950378|gb|ADB53122.1| integral membrane sensor signal transduction histidine kinase
[Conexibacter woesei DSM 14684]
Length = 504
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 447 IRP--CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+RP +++ + +LF+A L R EL EL Q L+A +E + Q L NL A+
Sbjct: 340 VRPHSLDLAPFVTELFDA---LTLTADRAFELGELPQGRLLA-DEDRVAQVLRNLARNAV 395
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564
T GG V + I+DDGP + + F + T
Sbjct: 396 EHTGPGGLVRLTVRVLDRTQVEFAIEDDGPGIPPEQRDRVFDRF----HRTDSARARRTG 451
Query: 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLPSPAPLSDLNGK 619
GL +AR ++E++G + A GS GG RV LP S GK
Sbjct: 452 GAGLGLAIARAIVEAHGGTI----------AAGSSPEGGARVAFTLPGFRAASKRAGK 499
>gi|24414810|emb|CAD55623.1| putative sensory kinase [Synechococcus elongatus PCC 7942]
Length = 405
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 103/288 (35%), Gaps = 72/288 (25%)
Query: 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366
Q R+ L+ QI+ PL++++T +K+L M+ E + + ++ + DRL
Sbjct: 157 QEQDRLEVLLHQIKNPLTALRTFAKLLLRRMQPEERNRQLAASLLRESDRL--------- 207
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
+ L +N+ + S P + S PL L++
Sbjct: 208 -------------ADLLNLLNSPSQSAPTAALP-----------------SANPLLLNSA 237
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
+ I P V D L L E R +A Q++ + L
Sbjct: 238 SPQI------------------PTEVDDYLPLLIE--RTVAIAQEKGLAFEVQDWRPLPP 277
Query: 487 VEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V PA L++ L NL+E A T V G + + A + DDGP + H
Sbjct: 278 VLAPASTLQEILGNLLENACKYTPVSGCIGLSWVALDTAAIAFCVWDDGPQIPAEDLPH- 336
Query: 545 LTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP 589
LF N GL +AR+L +S G +R SP
Sbjct: 337 -------LFERNFRGVQGKGEIPGSGLGLAIARDLSQSVGGDLRCYSP 377
>gi|325289366|ref|YP_004265547.1| integral membrane sensor signal transduction histidine kinase
[Syntrophobotulus glycolicus DSM 8271]
gi|324964767|gb|ADY55546.1| integral membrane sensor signal transduction histidine kinase
[Syntrophobotulus glycolicus DSM 8271]
Length = 350
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
N++D+ D+ A +Q+ + LS L + L +A+SN+++ AL T G
Sbjct: 198 NIADMAKDIRRHFAFRAGGEQKTIILSGPDHIGLFC-DRVWLTEAISNIVKNALDHTDTG 256
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
G++ I PA + + D+G +H H F F ++ T GL
Sbjct: 257 GQIVIEWKGLPA-ITQITVRDNGSGIHPEDIHHIFKRFYRSRFFKD------TQGIGLGL 309
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+A+ ++E++G + D+ALG G V +LP
Sbjct: 310 PLAKAIVEAHGGSI------TADSALGKGSAFVMSFLP 341
>gi|295396501|ref|ZP_06806662.1| two component system sensor kinase [Brevibacterium mcbrellneri ATCC
49030]
gi|294970693|gb|EFG46607.1| two component system sensor kinase [Brevibacterium mcbrellneri ATCC
49030]
Length = 375
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVVVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|374292999|ref|YP_005040034.1| putative sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357424938|emb|CBS87818.1| putative sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 489
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG-GKVEIVSAAAPAGDALVVIDDDGP 534
++++ L V+ L +AL NL A+ Q G G+V I + PAG + + DDGP
Sbjct: 355 INDIPAGTLAPVDAGQLGRALVNLGRNAV---QAGAGRVRIAARTGPAGLLTLTVADDGP 411
Query: 535 DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDA 594
+ + + PF GL +ARE+L ++G +R++ ++DA
Sbjct: 412 GLAPRARENLFQPFAGS---------ARAGGIGLGLAIAREVLRAHGGELRLV---RSDA 459
Query: 595 ALGSGGTRVELWLP 608
A GT L +P
Sbjct: 460 A----GTVFALDIP 469
>gi|197119034|ref|YP_002139461.1| HAMP domain-containing sensor histidine kinase [Geobacter
bemidjiensis Bem]
gi|197088394|gb|ACH39665.1| sensor histidine kinase, Cache_1 and HAMP domain-containing
[Geobacter bemidjiensis Bem]
Length = 829
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 19/162 (11%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
R C+++ ++ D +R Q+ Q+ L+E + + ++ ++QA+ N+I+ A
Sbjct: 686 FRECDLNRLVCDTVLLMRRQCERQKVQLNLTE-GEVPPLRLDPEKIKQAVLNIIKNAQEA 744
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
GG++E+V++ G A++ I DDGP + H L F+ +
Sbjct: 745 LPEGGRIEVVTSVQD-GYAVIGIGDDGPGI----ASHDLPLIFEPFFTRKGAGTGL---- 795
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL++ + ++E + VRV + A G GGTR + LP
Sbjct: 796 --GLSITQRIVEEHHGKVRV------ETAPG-GGTRFTIELP 828
>gi|383763337|ref|YP_005442319.1| putative two-component histidine kinase [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381383605|dbj|BAM00422.1| putative two-component histidine kinase [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 473
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 444 QNGI-RPCNVSDVLGDLFEAVRPLAHMQQRQVELSEL--SQSLLVAVEEPALRQALSNLI 500
QNGI ++ D+ L E P AH+ ++ L EL + + V+ AL+Q L NLI
Sbjct: 311 QNGIILHRSLIDLERWLQEEFMPQAHLLVKESHL-ELRPGEPTKLYVDPDALKQVLFNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVED 560
+ A+ T G +++ A A + + DDG + + H +PF + +
Sbjct: 370 DNAVQHTSTNGNIQL-GWQATASAVNIWVADDGEGIAPVDLPHIFSPF----YRGDRSRS 424
Query: 561 NMTWNFVAGLTVARELLESYGCVVRVIS 588
+ GLT+ + ++E++G VRV S
Sbjct: 425 RLRGGAGLGLTIVKRIVEAHGGEVRVAS 452
>gi|53802741|ref|YP_115486.1| sensor histidine kinase [Methylococcus capsulatus str. Bath]
gi|53756502|gb|AAU90793.1| sensor histidine kinase [Methylococcus capsulatus str. Bath]
Length = 591
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 22/164 (13%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+R C+V ++ + + + A + ++ S +++ A +E L Q NL+ A+
Sbjct: 441 MRSCDVHAIVRRVADLLATQARKKNIRLGCSLKAENSTTACDEELLMQVFLNLVMNAIQI 500
Query: 507 TQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
T GG+VE+ S++ +AL V +DDDGP + + PF F+ +
Sbjct: 501 TPSGGRVEVRSSSDR--EALSVEVDDDGPGIPEQNRPKVFDPF----FTTREGGIGL--- 551
Query: 566 FVAGLTVARELLES-YGCVVRVISPWKTDAALGSGGTRVELWLP 608
GLTV R+++++ +G +V S W GG R ++ LP
Sbjct: 552 ---GLTVTRQIVDAHHGRIVAEASEW--------GGARFKVSLP 584
>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
gi|198270906|gb|EDY95176.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides plebeius DSM 17135]
Length = 1325
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA-------LRQALSNLIEGALMRTQVG 510
D+ +R + Q Q ++ ++ S EE LR+ +SNL+ A T VG
Sbjct: 874 DVIAFLREMTEEFQNQAQVKNITFSFRADNEEACCWADRRQLRKVISNLLSNAFKYTPVG 933
Query: 511 GKVEIVSAAAPAGDALVVID 530
GKVE+V+ G + VID
Sbjct: 934 GKVELVAGVTEKGIEIKVID 953
>gi|315446748|ref|YP_004079627.1| signal transduction histidine kinase [Mycobacterium gilvum Spyr1]
gi|315265051|gb|ADU01793.1| signal transduction histidine kinase [Mycobacterium gilvum Spyr1]
Length = 394
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLT 546
+E L Q L NL+E AL T GG V++ + GD L + + D G + LT
Sbjct: 267 DEQRLSQVLGNLLENALRHTPSGGSVDV--SCVREGDRLRIAVADTGEGI----AAEHLT 320
Query: 547 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
+ + D GL +A+ L+E++G + V T A LG+G T
Sbjct: 321 RVFERFYRADTARDREHGGAGLGLAIAKALVEAHGGSISV-----TSAGLGTGAT 370
>gi|373855859|ref|ZP_09598605.1| ATP-binding region ATPase domain protein [Bacillus sp. 1NLA3E]
gi|372454928|gb|EHP28393.1| ATP-binding region ATPase domain protein [Bacillus sp. 1NLA3E]
Length = 358
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
+ +E + Q +NLI A+ T GGK+ IV +A++ I D G M QMH
Sbjct: 241 ITADEGLMDQVWTNLIHNAIKFTPQGGKISIVLQKDEDNEAVIQIIDTGIGMSKEVQMHI 300
Query: 545 LTPFGSELFSEN-MVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
F S N +VE N GL++ +++++ + ++V S
Sbjct: 301 FERFYKGDKSRNRLVEGNG-----LGLSITKKIIDIHQGDIKVKS 340
>gi|226946941|ref|YP_002802014.1| sensory histidine protein kinase TctE [Azotobacter vinelandii DJ]
gi|226721868|gb|ACO81039.1| sensory histidine protein kinase TctE [Azotobacter vinelandii DJ]
Length = 474
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G P + + +L A+ PLAH R V L+ E + V E L + LSNL+
Sbjct: 320 IAEGGAEPVELGSLCRELGLALAPLAHA--RGVALAFEGPGEVWVTGEPTQLNELLSNLV 377
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVED 560
+ AL T GG V + AAP A++ ++DDGP + + ++F D
Sbjct: 378 DNALAHTPPGGNVTL-RVAAP---AVLEVEDDGPGIPESAR--------QKVFERFQRLD 425
Query: 561 NMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL + E+ ++ +R++ D A GG RV + P
Sbjct: 426 PQRGGAGLGLAIVGEICRAHQAAIRLL-----DGA--GGGLRVRIEFP 466
>gi|428780707|ref|YP_007172493.1| histidine kinase [Dactylococcopsis salina PCC 8305]
gi|428694986|gb|AFZ51136.1| histidine kinase [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 119/274 (43%), Gaps = 62/274 (22%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQKSML-------LQQSSWQNNARMSNLVEQIRGPL 323
++F+ QR ++A+A V+DQ+ L Q Q R+ +++ Q+R PL
Sbjct: 186 WEFTQIQR-----TAGTIALACVLDQRYGLSQQKLRQQQWQQEQQRDRLDDILHQLRNPL 240
Query: 324 SSIQTLSKML--SLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
+++T K+L L+ + ++ S E+IM + DRL+ LQ++ D FL + E
Sbjct: 241 MALRTFGKLLLKRLNPEENQKSRSFAENIMRESDRLQQLLQDMGD--FLEEMG------E 292
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
+ + PE GN S P + D+E
Sbjct: 293 EEVTIETETTALPE---------------GNSTVKSLPP----SQVFDLET--------- 324
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
V++V+ + E++R +A Q++ + L +++ SL LV A + L+NL
Sbjct: 325 --------IQVTEVITPILESIRAIA--QEKNITLKTQIPDSLPLVKANRKAFGEVLNNL 374
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
++ A+ T G +E++ + ++I D+G
Sbjct: 375 LDNAIKYTPEKGSIELIIYQENSQKQNLMIRDNG 408
>gi|443287741|ref|ZP_21026836.1| Two-component signal transduction histidine kinase [Micromonospora
lupini str. Lupac 08]
gi|385884759|emb|CCH19337.1| Two-component signal transduction histidine kinase [Micromonospora
lupini str. Lupac 08]
Length = 649
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+RP ++ DVL + ++ R A ++EL+ ++ +V ++ LRQ + NLI A+
Sbjct: 462 LRPTDLRDVLTHVVDSHRGSAFAAGVRLELT-VAGDPVVRADQARLRQVIGNLISNAIRH 520
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP-----FGSELFSENMVEDN 561
T GG V +D +GP + + P + +
Sbjct: 521 TPPGGS--------------VTVDANGPTISVRDTGTGIGPTDLPKIFDRFWRADESRSR 566
Query: 562 MTWNFVAGLTVARELLESYGCVVRVIS 588
+T GL +AR L E++G + V S
Sbjct: 567 VTGGSGLGLAIARHLTEAHGGTIEVES 593
>gi|357417166|ref|YP_004930186.1| sensory histidine kinase CreC [Pseudoxanthomonas spadix BD-a59]
gi|355334744|gb|AER56145.1| sensory histidine kinase CreC [Pseudoxanthomonas spadix BD-a59]
Length = 478
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
LALA ++Q+G P + D+ AVR ++E+ +L+ L V + L
Sbjct: 316 LALAEVEQHGWLQSREPVALQDLFSQATGAVRTRLDAADVRLEV-QLADGLAVHGDGFLL 374
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
RQALSNL++ A+ + GG++ ++SA A + + DDGP +
Sbjct: 375 RQALSNLLDNAIAFSPRGGRI-VLSAVAQGDQVEISVRDDGPGV 417
>gi|238028503|ref|YP_002912734.1| sensor histidine kinase [Burkholderia glumae BGR1]
gi|237877697|gb|ACR30030.1| sensor histidine kinase [Burkholderia glumae BGR1]
Length = 439
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNG---IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G I P + +VL A +A Q+R ++L E ++ ++ + AL
Sbjct: 271 LALARSEPDGAGVIEPVALDEVLAGCVSAYAIVA--QKRGIDLGIEATEPAVIDADIGAL 328
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R ++N+++ A+ T GG++++ AP G ALV I D GP +
Sbjct: 329 RVMINNVLDNAVKYTPDGGRIDVSLGFAPDGPALVRIADSGPGI 372
>gi|445497439|ref|ZP_21464294.1| putative sensor protein [Janthinobacterium sp. HH01]
gi|444787434|gb|ELX08982.1| putative sensor protein [Janthinobacterium sp. HH01]
Length = 610
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A + + P+ALAPL V++ L + PLA QQR V L +L V
Sbjct: 331 AGKLTLDRAPVALAPL---------VAEALALML----PLA--QQRSVTLRHEPTALAVM 375
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLT 546
+ LRQ L N++ + GG V VS + IDD GP + Q T
Sbjct: 376 ADRQRLRQVLLNVVSNGIKYGAAGGTVS-VSCTQEGSVIAIHIDDSGPGIPAAMQDRLFT 434
Query: 547 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVR 585
P F +E T GL V++ L+++ +R
Sbjct: 435 P-----FDRLGIERGKTEGAGLGLAVSKSLMQAMHGDIR 468
>gi|127511032|ref|YP_001092229.1| integral membrane sensor signal transduction histidine kinase
[Shewanella loihica PV-4]
gi|126636327|gb|ABO21970.1| integral membrane sensor signal transduction histidine kinase
[Shewanella loihica PV-4]
Length = 419
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++P +++D+ DLFE +A + + LS L Q V ++ L QAL NL++ A+
Sbjct: 278 LQPLSLNDLCQDLFEMAEAMAESNGQTLSLS-LDQDYSVMGDKYLLFQALFNLVDNAIKY 336
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGP 534
+ G K+EI+ ++I D+GP
Sbjct: 337 SGEGAKIEIIQQGNE-----ILIRDNGP 359
>gi|374296535|ref|YP_005046726.1| histidine kinase,HAMP domain-containing protein,histidine kinase
[Clostridium clariflavum DSM 19732]
gi|359826029|gb|AEV68802.1| histidine kinase,HAMP domain-containing protein,histidine kinase
[Clostridium clariflavum DSM 19732]
Length = 461
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
+ + + VEL +V+V+ + Q + NL+ AL T GG VEI A DA+
Sbjct: 330 SDFKNKGVELKVTGNKCIVSVDRDKISQVIVNLLSNALKCTPEGGTVEI-KVAGLEKDAV 388
Query: 527 VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV 586
+++ D+G + + L + + + T GLT+A+ L+E++ + V
Sbjct: 389 IIVKDNGIGI----EKEDLPYIFERFYRADRSRNRNTGGSGIGLTIAKSLVEAHRGKIEV 444
Query: 587 IS 588
S
Sbjct: 445 KS 446
>gi|359795261|ref|ZP_09297886.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter arsenitoxydans SY8]
gi|359366680|gb|EHK68352.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter arsenitoxydans SY8]
Length = 470
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G P +++D+ + + P A +Q + L + +V+ E LR+A+S
Sbjct: 297 ASLAEGGFAAEPVDLADLADGVIRTLLPAARARQLDIGLEANCRPAMVSGAEWLLREAVS 356
Query: 498 NLIEGALMRTQVGG----KVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ GG ++EI SA +A + ++DDGP M
Sbjct: 357 NLVDNAIRYAAQGGVVTVRIEIGSA-----EARLAVEDDGPGM 394
>gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase
[Methylocystis sp. ATCC 49242]
gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase
[Methylocystis sp. ATCC 49242]
Length = 511
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 470 QQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527
Q+R + + E+ + L + +E A+RQ + NL+ A+ T GG+V I AG +
Sbjct: 358 QKRDIRMIEVVEPSLPRIWADERAVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYI 417
Query: 528 VIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
I D+GP + ++ FG + ++ ++ GL + + L+E +G
Sbjct: 418 AIKDNGPGIPEDEIAVVMSSFGRGMLAQKNADEGTG----LGLPIVKGLVELHG 467
>gi|312143606|ref|YP_003995052.1| integral membrane sensor signal transduction histidine kinase
[Halanaerobium hydrogeniformans]
gi|311904257|gb|ADQ14698.1| integral membrane sensor signal transduction histidine kinase
[Halanaerobium hydrogeniformans]
Length = 455
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS---------- 477
+D ++ + L LK+ R ++ + L + EA + ++Q+ Q+E++
Sbjct: 264 EDGKISLNQENLDELKEEIARMVSLIEKLKEFAEAQNKIFNLQKEQIEINKLIKNVSKKK 323
Query: 478 -------------ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
EL + L++ ++ +L Q L+NLIE A+ + GK+ I S +
Sbjct: 324 LKQIESKNIKLNLELEKELIIEADKDSLIQILNNLIENAVKYNRDNGKITIKSCQRD-NN 382
Query: 525 ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
++ I D G Y L + + + GL V +EL+E++G +
Sbjct: 383 IIIQISDTG----YGISREDLPYIFERFYRADKSRSSENGGTGIGLAVTKELIEAHGAKI 438
Query: 585 RVIS 588
V S
Sbjct: 439 EVDS 442
>gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510]
gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510]
Length = 593
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+ D L D V LA + + ++ LLV + +RQA+ NL+ A+ T GG
Sbjct: 447 LDDFLTDCLGLVEALALRKGVTLTGDAIAPGLLVTADGVRMRQAVLNLLSNAIKFTPAGG 506
Query: 512 KVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA-- 568
V + + A P G V+ + D G M+ + ++ PF V + +T
Sbjct: 507 TVRLEATADPDGSGTVITVRDSGIGMNAEEMLIAMEPF-------RQVHNYLTKAEAGTG 559
Query: 569 -GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
GL +AR +E++G + + D+ G+ GT V + LP
Sbjct: 560 LGLPLARRFVEAHGGTLTL------DSRPGA-GTTVTIRLP 593
>gi|240139110|ref|YP_002963585.1| histidine kinase with HK Homodimeric domain, ATPase domain and a
sensory PAS domain [Methylobacterium extorquens AM1]
gi|240009082|gb|ACS40308.1| putative histidine kinase with HK Homodimeric domain, ATPase domain
and a sensory PAS domain [Methylobacterium extorquens
AM1]
Length = 843
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M M +L P
Sbjct: 733 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 792
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 793 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 840
Query: 608 PS 609
P+
Sbjct: 841 PA 842
>gi|56751074|ref|YP_171775.1| two-component sensor histidine kinase [Synechococcus elongatus PCC
6301]
gi|56686033|dbj|BAD79255.1| two-component sensor histidine kinase [Synechococcus elongatus PCC
6301]
Length = 408
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 103/288 (35%), Gaps = 72/288 (25%)
Query: 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366
Q R+ L+ QI+ PL++++T +K+L M+ E + + ++ + DRL
Sbjct: 160 QEQDRLEVLLHQIKNPLTALRTFAKLLLRRMQPEERNRQLAASLLRESDRL--------- 210
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
+ L +N+ + S P + S PL L++
Sbjct: 211 -------------ADLLNLLNSPSQSAPTAALP-----------------SANPLLLNSA 240
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
+ I P V D L L E R +A Q++ + L
Sbjct: 241 SPQI------------------PTEVDDYLPLLIE--RTVAIAQEKGLAFEVQDWRPLPP 280
Query: 487 VEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V PA L++ L NL+E A T V G + + A + DDGP + H
Sbjct: 281 VLAPASTLQEILGNLLENACKYTPVSGCIGLSWVALDTAAIAFCVWDDGPQIPAEDLPH- 339
Query: 545 LTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP 589
LF N GL +AR+L +S G +R SP
Sbjct: 340 -------LFERNFRGVQGKGEIPGSGLGLAIARDLSQSVGGDLRCYSP 380
>gi|58039244|ref|YP_191208.1| two component sensor histidine kinase [Gluconobacter oxydans 621H]
gi|58001658|gb|AAW60552.1| Two component sensor histidine kinase [Gluconobacter oxydans 621H]
Length = 434
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
LV V A+++ LSNLIE AL GG V G + I D GP +
Sbjct: 303 LVHVRPLAMKRVLSNLIENAL---NYGGNVLATLRTREDGALEIAISDSGPGIPESEYQR 359
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLT-VARELLESYGCVVRVISPWKTDAALGSGGTR 602
LTPF + T GL V RE+ G +V + DA+ G GG R
Sbjct: 360 VLTPF----YRLEGSRSRATGGIGLGLAIVQREIAREGGSLVL----GRGDASKGYGGLR 411
Query: 603 VELWLPS--PAPLSDLNGKSNE 622
+ LP P+P G+ +
Sbjct: 412 ATIILPRGLPSPSRKTEGQGEQ 433
>gi|398840137|ref|ZP_10597375.1| signal transduction histidine kinase [Pseudomonas sp. GM102]
gi|398111155|gb|EJM01045.1| signal transduction histidine kinase [Pseudomonas sp. GM102]
Length = 433
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+A+ NL+ A+ + +++I P G + +DDDG + + PF +
Sbjct: 330 RAIQNLLRNAMRYCE--KRIQIGVQVCPKG-CEIWVDDDGIGIPEEERERIFEPF----Y 382
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
+ D T F GL ++R LE+ G + T A GG R LWLP+P
Sbjct: 383 RLDRSRDRATGGFGLGLAISRRALEAQGGTL-------TAQASPLGGARFRLWLPTP 432
>gi|298243490|ref|ZP_06967297.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
racemifer DSM 44963]
gi|297556544|gb|EFH90408.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
racemifer DSM 44963]
Length = 403
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
L+ V+ ++Q L+NLI A+ T GG V I ++ A ++ + D G + + H
Sbjct: 276 LLYVDPQRIKQVLNNLISNAIKYTPPGGSVTITASVHDARFQMISVTDTGYGIQVEDRPH 335
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
F + N + + + GL++AR ++E +G + D +G G +
Sbjct: 336 IFERF----YQSNHSQQSKMGGYGLGLSIARLIVEQHGGTISF------DTVVGKGSS 383
>gi|398863806|ref|ZP_10619348.1| signal transduction histidine kinase [Pseudomonas sp. GM78]
gi|398246221|gb|EJN31717.1| signal transduction histidine kinase [Pseudomonas sp. GM78]
Length = 462
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|254561704|ref|YP_003068799.1| histidine kinase [Methylobacterium extorquens DM4]
gi|254268982|emb|CAX24943.1| putative histidine kinase with HK Homodimeric domain, ATPase domain
and a sensory PAS domain [Methylobacterium extorquens
DM4]
Length = 842
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M M +L P
Sbjct: 732 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 791
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 792 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 839
Query: 608 PS 609
P+
Sbjct: 840 PA 841
>gi|428226412|ref|YP_007110509.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427986313|gb|AFY67457.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1486
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 25/178 (14%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+RP N++ L + VRP A + Q+ L +++ S+ V+ + L+Q NL+ A+
Sbjct: 1184 LRPTNLARALEAALDTVRPTASAKHLQL-LIQIAPSVFVSGDFDRLQQVAWNLLSNAVKF 1242
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP-FGSELFSENMVEDNMT-- 563
T GG+V +V +V + + M + P F +F D+ T
Sbjct: 1243 TPEGGQVTVV----------LVSQESHAEFSVMDTGQGIAPDFLPYVFERFRQADDTTSR 1292
Query: 564 --WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT-RVELWL---PSPAPLSD 615
GL + R L+E +G + V SP +G G T RV L L PAP D
Sbjct: 1293 SQGGLGLGLAIVRNLVELHGGTISVESP-----GIGCGATFRVRLPLLQNSQPAPEED 1345
>gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
Length = 1209
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+P + +++ EA R +EL+ + V V+ + Q ++NLI A+
Sbjct: 790 FQPVVLDELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKF 849
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+ GGKVE+ P G + + D GP + + F ++ S N T
Sbjct: 850 SPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEFRDRIFQKF-AQADSSNTRRQGGTG-- 906
Query: 567 VAGLTVARELLESYGCVVRVIS 588
GL+++R ++E +G + ++
Sbjct: 907 -LGLSISRAIVERHGGQIGFVT 927
>gi|398857030|ref|ZP_10612736.1| signal transduction histidine kinase [Pseudomonas sp. GM79]
gi|398241691|gb|EJN27335.1| signal transduction histidine kinase [Pseudomonas sp. GM79]
Length = 433
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+A+ NL+ A+ + +++I P G + +DDDG + + PF +
Sbjct: 330 RAIQNLLRNAMRYCE--KRIQIGVQVCPKG-CEIWVDDDGIGIPEEERERIFEPF----Y 382
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
+ D T F GL ++R LE+ G + T A GG R LWLP+P
Sbjct: 383 RLDRSRDRATGGFGLGLAISRRALEAQGGTL-------TAQASPLGGARFRLWLPTP 432
>gi|308808247|ref|XP_003081434.1| COG0642: Signal transduction histidine kinase (ISS) [Ostreococcus
tauri]
gi|116059896|emb|CAL55603.1| COG0642: Signal transduction histidine kinase (ISS) [Ostreococcus
tauri]
Length = 457
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKM 332
FS+ Q+ + + A+ + + ++L ++++ + ++ + + R PL++++TL M
Sbjct: 150 FSSKQKQFLESAANAFTDAWAIHRNNVLAAAAAYRADQKLGVYLYESRQPLNALRTLGGM 209
Query: 333 LSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF---LTKANIVRY 378
L +H+K + + D+ E ++ QGD L ++L+ ++ TK V Y
Sbjct: 210 LKIHLKPDDPAGDMAEAMVQQGDALAELSRQLESVLYPNATTKIEGVSY 258
>gi|229590187|ref|YP_002872306.1| sensor kinase protein [Pseudomonas fluorescens SBW25]
gi|229362053|emb|CAY48954.1| sensor kinase protein [Pseudomonas fluorescens SBW25]
Length = 433
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 52/124 (41%), Gaps = 26/124 (20%)
Query: 494 QALSNLIEGAL----MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+AL NL+ A R QVG KV P G + +DDDG + + PF
Sbjct: 330 RALQNLLRNATRYCDKRIQVGVKV------CPKG-CEIWVDDDGIGIPLDQRERIFEPF- 381
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS--GGTRVELWL 607
+ + D T F GL ++R LE+ G T AL S GG R +WL
Sbjct: 382 ---YRLDRSRDRATGGFGLGLAISRRALEAQG---------GTLTALASPLGGARFRVWL 429
Query: 608 PSPA 611
PS A
Sbjct: 430 PSVA 433
>gi|86157556|ref|YP_464341.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85774067|gb|ABC80904.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 748
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 21/171 (12%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
PC+ +D+LG+ + +R A + + LS VA + + Q L N+ A+ T+
Sbjct: 589 PCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPAVACDRDRVLQVLGNVASNAVKATE 648
Query: 509 VGGKVEIVSAAAPAGDALVV--IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
G + AA GD VV I D GP + H +F W
Sbjct: 649 EGA---VCLAAEAQGDGAVVFRIRDTGPGIPDADLPH--------VFDRFQRGSAARWRG 697
Query: 567 VA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL 616
GL +AR L+E++G + W A GT V LP+ AP DL
Sbjct: 698 SGLGLAIARGLVEAHGGRI-----WAESAP--GAGTTVSFTLPASAPAPDL 741
>gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
Length = 1209
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+P + +++ EA R +EL+ + V V+ + Q ++NLI A+
Sbjct: 790 FQPVVLDELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKF 849
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+ GGKVE+ P G + + D GP + + F ++ S N T
Sbjct: 850 SPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEFRDRIFQKF-AQADSSNTRRQGGTG-- 906
Query: 567 VAGLTVARELLESYGCVVRVIS 588
GL+++R ++E +G + ++
Sbjct: 907 -LGLSISRAIVERHGGQIGFVT 927
>gi|418058181|ref|ZP_12696160.1| PAS/PAC sensor signal transduction histidine kinase
[Methylobacterium extorquens DSM 13060]
gi|373568296|gb|EHP94246.1| PAS/PAC sensor signal transduction histidine kinase
[Methylobacterium extorquens DSM 13060]
Length = 861
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M M +L P
Sbjct: 751 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 810
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 811 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 858
Query: 608 PS 609
P+
Sbjct: 859 PA 860
>gi|168702739|ref|ZP_02735016.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
Length = 1573
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
++ LL++ + L Q L+NL+ A T GG++ ++SA GDA+V + D G +
Sbjct: 1312 AEPLLLSADHTRLVQVLANLLNNAAKYTPQGGRI-VLSAQRDGGDAVVTVSDTGVGIPA- 1369
Query: 540 TQMHSLTPFGSELFSE--NMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ P ELF++ +E + GLT+ + L+E +G VR SP
Sbjct: 1370 ----DMLPKVFELFAQVGTSIERSQG-GLGIGLTLVKRLVEMHGGTVRAESP 1416
>gi|218530735|ref|YP_002421551.1| PAS/PAC sensor signal transduction histidine kinase
[Methylobacterium extorquens CM4]
gi|218523038|gb|ACK83623.1| PAS/PAC sensor signal transduction histidine kinase
[Methylobacterium extorquens CM4]
Length = 841
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M M +L P
Sbjct: 731 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 790
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
FG++L V + F GLT+ + L+E+ R IS K + GT VE+
Sbjct: 791 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFR-ISSRKDE------GTLVEMLF 838
Query: 608 PS 609
P+
Sbjct: 839 PA 840
>gi|331000586|ref|ZP_08324255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Parasutterella excrementihominis YIT 11859]
gi|329571257|gb|EGG52953.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Parasutterella excrementihominis YIT 11859]
Length = 629
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 22/107 (20%)
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
KVEI +A A DALV+I+D+GPDM Q SL G ++ +D + GL
Sbjct: 543 KVEIKNAGA---DALVIIEDNGPDMTD-DQFASLRNLG-----QSSKKDGLG----LGLA 589
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNG 618
+ RELLE+ G ++++ + SGG R L P L D +G
Sbjct: 590 IVRELLEANGGSLKLVR-------IPSGGLRCIASL--PIALEDKDG 627
>gi|333378181|ref|ZP_08469912.1| hypothetical protein HMPREF9456_01507 [Dysgonomonas mossii DSM
22836]
gi|332883157|gb|EGK03440.1| hypothetical protein HMPREF9456_01507 [Dysgonomonas mossii DSM
22836]
Length = 432
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 452 VSDV-LGDLFEAVRPLAHMQ--QRQVELSE--LSQSLLVAVEEPALRQALSNLIEGALMR 506
VSDV + +L +V L+ + +R + L+ ++ L ++ Q L N+++ A
Sbjct: 293 VSDVSINELARSVESLSRAECLKRNINLNLNLTTEKDLACIDSIQFEQVLVNIVKNAYEA 352
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
G + I++ + P + I+D+GPD+ T+ TPF F+ +
Sbjct: 353 IDKNGDINIITTSQPLS---ITIEDNGPDIPEETKQKLFTPF----FTTKQTGQGI---- 401
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
GL RE+L ++ C K D +G T+ E++
Sbjct: 402 --GLMFVREVLLNHNC--------KFDLKSENGRTKFEIFF 432
>gi|296447262|ref|ZP_06889191.1| integral membrane sensor signal transduction histidine kinase
[Methylosinus trichosporium OB3b]
gi|296255224|gb|EFH02322.1| integral membrane sensor signal transduction histidine kinase
[Methylosinus trichosporium OB3b]
Length = 514
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 470 QQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527
Q+R +E+ E+++ L + +E A+RQ + NL+ A+ T GG+V + AG V
Sbjct: 356 QKRGIEMIEMTEPDLPRLWADERAVRQIVLNLLTNAIKFTPQGGQVTLKVGWTSAGGQYV 415
Query: 528 VIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 587
I D GP + ++ FG ++ E+ GL + + L++ +G + ++
Sbjct: 416 AIRDTGPGIPEEEIAVVMSSFGRGTLAQKNAEEGTG----LGLPIVKGLIDLHGGLFKLA 471
Query: 588 S 588
S
Sbjct: 472 S 472
>gi|163851983|ref|YP_001640026.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163663588|gb|ABY30955.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 846
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M M +L P
Sbjct: 736 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 795
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 796 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 843
Query: 608 PS 609
P+
Sbjct: 844 PA 845
>gi|444915463|ref|ZP_21235595.1| Chemotaxis protein methyltransferase CheR [Cystobacter fuscus DSM
2262]
gi|444713394|gb|ELW54294.1| Chemotaxis protein methyltransferase CheR [Cystobacter fuscus DSM
2262]
Length = 750
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + V+ EA PL ++ +E+ S LLV + L Q ++NL+ A T
Sbjct: 450 PLELVSVVTRAVEAASPLIEQRRHALEVHVPSSGLLVLADADRLTQVVANLLTNAARYTP 509
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG + + A G + ++DDG + + PF S + E +
Sbjct: 510 SGGHIRL-RAHGHEGSIALAVEDDGQGIPPELRSRIFEPFVQGPRSLDRSEGGLG----I 564
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 608
GL + R L+E++G V + S G G G+ +WLP
Sbjct: 565 GLALVRSLVEAHGGHVELHSD-------GPGRGSTFTVWLP 598
>gi|383791053|ref|YP_005475627.1| histidine kinase,Response regulator receiver domain protein,PAS
domain-containing protein,histidine kinase [Spirochaeta
africana DSM 8902]
gi|383107587|gb|AFG37920.1| histidine kinase,Response regulator receiver domain protein,PAS
domain-containing protein,histidine kinase [Spirochaeta
africana DSM 8902]
Length = 501
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA--------------P 521
++EL S L+ + L QA+ NL+ A GG V I S A P
Sbjct: 357 VAELDGSCLIHADAGLLEQAVINLVLNARDAMPDGGTVLIRSRLADVHEQAQLALDTLPP 416
Query: 522 AGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
++ + D GP + H PF FS + F GL++ +++
Sbjct: 417 GSYVVITVQDQGPGIPAEALEHIFEPF----FSTKA----ESSGFGLGLSIVYGIVKQSR 468
Query: 582 CVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
+ V+SP DA GGTR +L+LP P
Sbjct: 469 GYIEVVSPVAPDA----GGTRFDLYLPVLKP 495
>gi|296119389|ref|ZP_06837952.1| two-component system sensor kinase TcsS4 [Corynebacterium
ammoniagenes DSM 20306]
gi|295967618|gb|EFG80880.1| two-component system sensor kinase TcsS4 [Corynebacterium
ammoniagenes DSM 20306]
Length = 382
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|303258399|ref|ZP_07344402.1| putative His Kinase A (phosphoacceptor) domain protein
[Burkholderiales bacterium 1_1_47]
gi|302858845|gb|EFL81933.1| putative His Kinase A (phosphoacceptor) domain protein
[Burkholderiales bacterium 1_1_47]
Length = 604
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 22/107 (20%)
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
KVEI +A A DALV+I+D+GPDM Q SL G ++ +D + GL
Sbjct: 518 KVEIKNAGA---DALVIIEDNGPDMTD-DQFASLRNLG-----QSSKKDGLG----LGLA 564
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNG 618
+ RELLE+ G ++++ + SGG R L P L D +G
Sbjct: 565 IVRELLEANGGSLKLVR-------IPSGGLRCIASL--PIALEDKDG 602
>gi|115375189|ref|ZP_01462456.1| signal transduction histidine kinase [Stigmatella aurantiaca
DW4/3-1]
gi|115367840|gb|EAU66808.1| signal transduction histidine kinase [Stigmatella aurantiaca
DW4/3-1]
Length = 461
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G +S+VL +L EA RP+A +++ S + L + + L Q +NL+E
Sbjct: 301 RKGGFERLCLSEVLENLVEAYRPVAEDHGQRLTAS-ICPKLFIQGDRSLLAQLFANLVEN 359
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
AL + G + + A G V + D GP + + PF
Sbjct: 360 ALRHSGRGSAIHLGLEAGADGGFTVTVSDTGPGIPSTEYENVFKPF 405
>gi|428218786|ref|YP_007103251.1| histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990568|gb|AFY70823.1| histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 383
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQN----NARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
I +LA+A +D++ L++S Q +S ++ Q+R PL++I+T +K+L+ +
Sbjct: 113 QIANTLAIACALDRRCQWLEESQKQTYLGQQQFLSTVMHQLRNPLTAIKTFAKLLARRIA 172
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIR 398
+ V I+ + ++ L E+ A RY E L + P S
Sbjct: 173 PDNPMHRFVSGILQESQHMQDILAEVDQA---------RYAAEELALPQQEMFLLPAS-- 221
Query: 399 SQLSNNFSRENSGNKLQNSCKPLSLDTPA----KDIEM-PMPPLALAPLKQNGIRPCNVS 453
+ E + L PL T A K + P L P+K NG +
Sbjct: 222 -------TLELAATDLAEILTPLLRSTEAIAETKGLSFRAYMPAELPPIKANG---GALR 271
Query: 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE 489
+VLG+L + Q ++ + L +++ +A+++
Sbjct: 272 EVLGNLLDNAVKYTPQGQVEIAVRVLPETVAIAIKD 307
>gi|345872771|ref|ZP_08824699.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodococcus drewsii
AZ1]
gi|343917962|gb|EGV28735.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodococcus drewsii
AZ1]
Length = 885
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALR--QALSNLIEGALM 505
RP +SD++ + + VR L M +R + V VE ++R Q L NL+ A
Sbjct: 591 RPVQISDMVQQVVDGVRFL--MDERHHHFTWTLPDPQVQVEGDSVRLSQVLLNLLVNAAK 648
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE-DNMTW 564
T GG+V V + A + + + D+G M Q+ SL +LFS M D +
Sbjct: 649 YTPEGGRVS-VETESTADEVRIRVSDNGQGMS-QEQIDSLF----KLFSPGMRPIDTPSG 702
Query: 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPAP 612
GL +AR L E +G + IS G G GT + L LP P
Sbjct: 703 GLGLGLAIARRLTEMHGGRLDAIST-------GVGQGTEMRLHLPRLQP 744
>gi|372490129|ref|YP_005029694.1| signal transduction histidine kinase [Dechlorosoma suillum PS]
gi|359356682|gb|AEV27853.1| signal transduction histidine kinase [Dechlorosoma suillum PS]
Length = 462
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 26/181 (14%)
Query: 437 LALA---PLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA P + ++P ++ +V+ E P A +R ++L +L+ + L+ L
Sbjct: 298 LALARAEPGGEQAMKPLDLVEVVHQCAETWHPRA--LERNIDLGFDLAPAPLLG-HPRLL 354
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSEL 552
+ LSNLI+ A+ T GG V V A G A++ +DD GP + P E
Sbjct: 355 EELLSNLIDNAIHYTPAGGSV-TVRTFARDGAAVLQVDDTGP---------GIAPEQREK 404
Query: 553 FSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
E N N GL + RE+ + +G V W +A + GG R+E+ P
Sbjct: 405 VFERFHRINGEQNPEGCGLGLAIVREIAKQHGADV-----WLDEAPV-LGGARLEVSFPP 458
Query: 610 P 610
P
Sbjct: 459 P 459
>gi|365856116|ref|ZP_09396140.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acetobacteraceae bacterium AT-5844]
gi|363718344|gb|EHM01685.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acetobacteraceae bacterium AT-5844]
Length = 483
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R ++ +LG L E + L H QV +E ++ L ALR+A NLIE A+
Sbjct: 324 RTVDLPALLGSLCEDMAELGH----QVTFAE-AERLGYRCRPAALRRACRNLIENAVRY- 377
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
G+ VS +V++DDGP + + + + PF + + T
Sbjct: 378 ---GECARVSVERYPHQVRIVVEDDGPGIPWQERERAFAPF----YRLENSRNRETGGVG 430
Query: 568 AGLTVARELLESYGCVVRVIS 588
GL++AR + +G V + S
Sbjct: 431 LGLSIARTIARHHGGDVMLTS 451
>gi|237808038|ref|YP_002892478.1| Cache sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
gi|237500299|gb|ACQ92892.1| Cache sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
Length = 845
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALM 505
I P + V+ + E +RP+A +Q + +EL +++ LV + LRQ L NL+ A+
Sbjct: 549 IEPVDAIRVIKECNEMLRPMAVKEQLSLS-AELPETMVLVMADSTRLRQVLINLLSNAIK 607
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
+ GK+ VSA + + D G + Q TPF + ++
Sbjct: 608 YNYLNGKIN-VSAEIKDKYLRISVRDSGRGISPEKQTELFTPFNRLGHETSGIKGTGI-- 664
Query: 566 FVAGLTVARELLESYGCVVRVISPWK 591
GL+++++L+ES + S W+
Sbjct: 665 ---GLSISKQLIESMNGRIGFSSQWQ 687
>gi|86157261|ref|YP_464046.1| periplasmic sensor signal transduction histidine kinase
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85773772|gb|ABC80609.1| periplasmic sensor signal transduction histidine kinase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 439
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
++Q L NL++ AL + G VE+ +A P G AL+ + D GP + + + +P
Sbjct: 328 VKQILVNLVQNALDASPAGAAVELEAAPGPGGGALIRVQDRGPGLDPAVRDAAFSPG--- 384
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
F+ + GLT+AR L +G + V+SP
Sbjct: 385 -FTTKASGSGL------GLTIARSLARQHGGDL-VLSP 414
>gi|120404639|ref|YP_954468.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium vanbaalenii PYR-1]
gi|119957457|gb|ABM14462.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium vanbaalenii PYR-1]
Length = 379
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
L Q + NL++ AL T G+VE+ +AA P G+ ++ + D+G + H F
Sbjct: 268 LAQVIGNLLDNALRHTPARGRVEVDAAAKP-GEVIITVGDNGDGIAAEHLPHVFERF--- 323
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPS 609
+ ++ D GL +A+ L E++G + T A+ G G G+ + LP+
Sbjct: 324 -YRADVARDRSHGGAGIGLAIAKALTEAHGGRI-------TAASRGPGMGSTFTIELPA 374
>gi|403381658|ref|ZP_10923715.1| two-component hybrid sensor and regulator [Paenibacillus sp. JC66]
Length = 1052
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALM 505
+ P +VS + + + +R +A + ++++ EL Q L LV +E L Q L NL+ A+
Sbjct: 515 MEPLSVSSTVSGVADMLRYMAEGKALELKV-ELGQELPLVQADEKRLVQILFNLVHNAVK 573
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
T+ G +SAA G + + D G M T++ + P+ E + N T
Sbjct: 574 YTESGTIT--ISAAEENGQVTIKVADTGIGMDEETKIRAFLPY------EQGIPANKTDG 625
Query: 566 FVA-GLTVARELLESYGCVVRV 586
+ GL+++++L++ +G ++V
Sbjct: 626 GIGLGLSISQQLVKLHGSELQV 647
>gi|153811669|ref|ZP_01964337.1| hypothetical protein RUMOBE_02061 [Ruminococcus obeum ATCC 29174]
gi|149832410|gb|EDM87495.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Ruminococcus obeum ATCC 29174]
Length = 402
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 471 QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI---------VSAAAP 521
Q++VEL + V L +A+ NL+E A+ GGKV + V+ + P
Sbjct: 259 QKKVELIQEEGDCTVTGSYLLLYRAVYNLVENAIKYNHSGGKVTVKISQTKALPVAHSKP 318
Query: 522 AGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
A ALV + D G + Q PF F + GL + E+ +G
Sbjct: 319 ADYALVEVTDTGIGISPEYQEKIFAPF----FRVDKSRSRAMGGAGLGLALVAEIARQHG 374
Query: 582 CVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL 616
V+V++ K G+ + L LP +PL ++
Sbjct: 375 GQVKVLASSKK-------GSTIALMLPINSPLIEI 402
>gi|443324923|ref|ZP_21053644.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
gi|442795482|gb|ELS04848.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
Length = 436
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 283 NICRSLAMAYVMDQKSMLLQQS--------SWQNNARMSNLVEQIRGPLSSIQTLSKMLS 334
+I +SLA+A ++++S ++ +W+ + R +L+ Q+R PL++++T SK+L
Sbjct: 145 DIAQSLAIARFLERQSQWYREQLSKQENLFNWEQD-RTDDLLHQLRNPLTALRTFSKLLL 203
Query: 335 LHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
+ + I + I+ + D L LQ+ +
Sbjct: 204 KRFVSNSREHSIADSILRESDHLANLLQQFE 234
>gi|387815818|ref|YP_005431311.1| sensor of the two component response regulator ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
kinase A, N-terminal, partial [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381340841|emb|CCG96888.1| putative sensor of the two component response regulator ATP-binding
region, ATPase-like:Histidine kinase, HAMP
region:Histidine kinase A, N-terminal precursor
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 445
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+++D++ + E R + EL E Q+ + AL QA+ N++ A T G
Sbjct: 297 DLTDLVDTIAEDARYEYPEHHIRTELPE--QAEIRGTSHRALAQAIENVVRNACKYTPAG 354
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
G V ++ AG + ++DDGP + PF F + +++ GL
Sbjct: 355 GTV-MIRLQEEAGGYRLSVEDDGPGVPAEQLEAIFRPF----FRATRIRESVPSGHGLGL 409
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+A L++ G +R + G+GG + LWLP+
Sbjct: 410 ALASRHLDAIGGRIRACN------LAGNGGLAMHLWLPA 442
>gi|133757365|ref|YP_001096245.1| hypothetical protein [Corynebacterium sp. L2-79-05]
gi|110084140|gb|ABG49294.1| hypothetical protein [Corynebacterium sp. L2-79-05]
Length = 382
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|120556439|ref|YP_960790.1| integral membrane sensor signal transduction histidine kinase
[Marinobacter aquaeolei VT8]
gi|120326288|gb|ABM20603.1| integral membrane sensor signal transduction histidine kinase
[Marinobacter aquaeolei VT8]
Length = 449
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+++D++ + E R + EL E Q+ + AL QA+ N++ A T G
Sbjct: 301 DLTDLVDTIAEDARYEYPEHHIRTELPE--QAEIRGTSHRALAQAIENVVRNACKYTPAG 358
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
G V ++ AG + ++DDGP + PF F + +++ GL
Sbjct: 359 GTV-MIRLQEEAGGYRLSVEDDGPGVPAEQLEAIFRPF----FRATRIRESVPSGHGLGL 413
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+A L++ G +R + G+GG + LWLP+
Sbjct: 414 ALASRHLDAIGGRIRACN------LAGNGGLAMHLWLPA 446
>gi|323528207|ref|YP_004230359.1| histidine kinase [Burkholderia sp. CCGE1001]
gi|323385209|gb|ADX57299.1| histidine kinase [Burkholderia sp. CCGE1001]
Length = 456
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
VS VL DL +A Q+R +++ +EL +A L +SNL++ A+ TQ G
Sbjct: 316 VSCVLEDLVDAA------QRRGIDIGAELDGEAYIAGSSMLLTALVSNLVDNAIRYTQNG 369
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
G+V + G+ +V + D+GP + + H E F + T GL
Sbjct: 370 GRV-TATCRTEGGEVVVQVIDNGPGIPAEARAHVF-----ERFYRGTTDAEGTG---LGL 420
Query: 571 TVARELLESYGCVV 584
++ RE+ S+G V
Sbjct: 421 SIVREVAHSHGGTV 434
>gi|388467909|ref|ZP_10142119.1| sensor histidine kinase RpeA [Pseudomonas synxantha BG33R]
gi|388011489|gb|EIK72676.1| sensor histidine kinase RpeA [Pseudomonas synxantha BG33R]
Length = 434
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 52/124 (41%), Gaps = 26/124 (20%)
Query: 494 QALSNLIEGAL----MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+AL NL+ A R QVG KV P G + +DDDG + + PF
Sbjct: 330 RALQNLLRNATRYCDKRIQVGVKV------CPNG-CEIWVDDDGIGIPMDQRERIFEPF- 381
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS--GGTRVELWL 607
+ + D T F GL ++R LE+ G T AL S GG R +WL
Sbjct: 382 ---YRLDRSRDRATGGFGLGLAISRRALEAQG---------GTLTALASPLGGARFRVWL 429
Query: 608 PSPA 611
PS A
Sbjct: 430 PSQA 433
>gi|407783974|ref|ZP_11131163.1| sensor histidine kinase [Oceanibaculum indicum P24]
gi|407198854|gb|EKE68881.1| sensor histidine kinase [Oceanibaculum indicum P24]
Length = 440
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 21/121 (17%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
A ++AL+NL++ A + G VE VSA G + IDDDGP + + PF
Sbjct: 337 AFKRALTNLVQNA---CRYGKAVE-VSARQTDGHVEIDIDDDGPGIPPEKRAEVFKPF-- 390
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWL 607
F + MT GLT+AR+++ +G + LG GG R + L
Sbjct: 391 --FRLEGSRNPMTGGVGLGLTIARDIVLGHGG----------ELVLGDAPQGGLRATILL 438
Query: 608 P 608
P
Sbjct: 439 P 439
>gi|423014855|ref|ZP_17005576.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans AXX-A]
gi|338782105|gb|EGP46482.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans AXX-A]
Length = 466
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A+ + +P AP P +++++ + + P A +Q + L + ++V
Sbjct: 288 ARAKDASLPEAGFAP------EPVDLAELAHAVIRGLLPTARARQLDIGLDAETGPVVVN 341
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ LR+A+SNL++ A+ T GG V + P G A + ++DDGP M
Sbjct: 342 GADWLLREAVSNLVDNAIRYTAPGGMVTVQVRNLP-GQAWLTVEDDGPGM 390
>gi|625842|pir||JC2206 sensory kinase - Synechococcus sp
gi|987710|dbj|BAA06109.1| sensory kinase [Synechococcus elongatus PCC 6301]
gi|743316|prf||2012230A sensory kinase
Length = 392
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 103/288 (35%), Gaps = 72/288 (25%)
Query: 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366
Q R+ L+ QI+ PL++++T +K+L M+ E + + ++ + DRL
Sbjct: 160 QEQDRLEVLLHQIKNPLTALRTFAKLLLRRMQPEERNRQLAASLLRESDRL--------- 210
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
+ L +N+ + S P + S PL L++
Sbjct: 211 -------------ADLLNLLNSPSQSAPTAALP-----------------SANPLLLNSA 240
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
+ I P V D L L E R +A Q++ + L
Sbjct: 241 SPQI------------------PTEVDDYLPLLIE--RTVAIAQEKGLAFEVQDWRPLPP 280
Query: 487 VEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V PA L++ L NL+E A T V G + + A + DDGP + H
Sbjct: 281 VLAPASTLQEILGNLLENACKYTPVSGCIGLSWVALDTAAIAFCVWDDGPQIPAEDLPH- 339
Query: 545 LTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP 589
LF N GL +AR+L +S G +R SP
Sbjct: 340 -------LFERNFRGVQGKGEIPGSGLGLAIARDLSQSVGGDLRCYSP 380
>gi|410422433|ref|YP_006902882.1| sensor kinase protein [Bordetella bronchiseptica MO149]
gi|427823035|ref|ZP_18990097.1| putative sensor kinase protein [Bordetella bronchiseptica Bbr77]
gi|408449728|emb|CCJ61420.1| putative sensor kinase protein [Bordetella bronchiseptica MO149]
gi|410588300|emb|CCN03357.1| putative sensor kinase protein [Bordetella bronchiseptica Bbr77]
Length = 471
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL++ A+ T G +V V G A +V++D+GP M + F +N
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHTEGGHAWLVVEDNGPGMSAEDIARASVRFRRGAAGKNK 416
Query: 558 VEDNMTWNFVAGLTVARELLESYG 581
+ GL + R ++E +G
Sbjct: 417 SGAGL------GLAIVRTIIEIHG 434
>gi|397905171|ref|ZP_10506042.1| Phosphate regulon sensor protein PhoR (SphS) [Caloramator
australicus RC3]
gi|397161820|emb|CCJ33376.1| Phosphate regulon sensor protein PhoR (SphS) [Caloramator
australicus RC3]
Length = 572
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
NV ++L ++ ++PLA + ++ L + + + V + +Q L NL++ A+ T
Sbjct: 424 KLNVIEILEEIKYIMKPLAESKNIEIYLEKECEDIYVHGDRDKFKQMLINLLDNAIKYTN 483
Query: 509 VGGKVEIVSAAAPAGDALVVIDD 531
GGKV+I+ + + VID+
Sbjct: 484 EGGKVKIILEKSTNEVIISVIDN 506
>gi|163748638|ref|ZP_02155891.1| Histidine kinase [Shewanella benthica KT99]
gi|161331748|gb|EDQ02552.1| Histidine kinase [Shewanella benthica KT99]
Length = 174
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA---P 521
P A+ Q+ Q++ E+ Q+L + + L + LSNL++ A+ T GG + I +AA P
Sbjct: 34 PRANTQKVQLDF-EVDQNLSIITDPQILMRVLSNLVDNAIRYTPTGGIISIKLSAANSSP 92
Query: 522 AGDA----LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL 577
G + + D+G MH ++ +L P ++ D++ GL + R+LL
Sbjct: 93 KGRGHQGIWLSVSDNGSGMHK-HELQALQPMRNK---PRFKRDDILPQLGVGLAIVRQLL 148
Query: 578 ESYGCVVRVIS 588
C + + S
Sbjct: 149 GLLECNIDIDS 159
>gi|81299264|ref|YP_399472.1| GAF sensor signal transduction histidine kinase [Synechococcus
elongatus PCC 7942]
gi|81168145|gb|ABB56485.1| GAF sensor signal transduction histidine kinase [Synechococcus
elongatus PCC 7942]
Length = 404
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 103/288 (35%), Gaps = 72/288 (25%)
Query: 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366
Q R+ L+ QI+ PL++++T +K+L M+ E + + ++ + DRL
Sbjct: 156 QEQDRLEVLLHQIKNPLTALRTFAKLLLRRMQPEERNRQLAASLLRESDRL--------- 206
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
+ L +N+ + S P + S PL L++
Sbjct: 207 -------------ADLLNLLNSPSQSAPTAALP-----------------SANPLLLNSA 236
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
+ I P V D L L E R +A Q++ + L
Sbjct: 237 SPQI------------------PTEVDDYLPLLIE--RTVAIAQEKGLAFEVQDWRPLPP 276
Query: 487 VEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V PA L++ L NL+E A T V G + + A + DDGP + H
Sbjct: 277 VLAPASTLQEILGNLLENACKYTPVSGCIGLSWVALDTAAIAFCVWDDGPQIPAEDLPH- 335
Query: 545 LTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP 589
LF N GL +AR+L +S G +R SP
Sbjct: 336 -------LFERNFRGVQGKGEIPGSGLGLAIARDLSQSVGGDLRCYSP 376
>gi|384214836|ref|YP_005606000.1| phosphate regulon, two-component sensor histidine kinase
[Bradyrhizobium japonicum USDA 6]
gi|354953733|dbj|BAL06412.1| phosphate regulon, two-component sensor histidine kinase
[Bradyrhizobium japonicum USDA 6]
Length = 432
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L +F+ + PLA +Q +VE +++A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIFQVADGLEPLARERQVEVETHLPETPVMIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL----VVIDDDGPDM 536
L GG+V + AAA A D V++ D GP +
Sbjct: 327 LKYGASGGRVIVSLAAAAATDGTQEIRVMVRDFGPGI 363
>gi|427817301|ref|ZP_18984364.1| putative sensor kinase protein [Bordetella bronchiseptica D445]
gi|410568301|emb|CCN16334.1| putative sensor kinase protein [Bordetella bronchiseptica D445]
Length = 471
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL++ A+ T G +V V G A +V++D+GP M + F +N
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHTDGGHAWLVVEDNGPGMSAEDIARASVRFRRGAAGKNK 416
Query: 558 VEDNMTWNFVAGLTVARELLESYG 581
+ GL + R ++E +G
Sbjct: 417 SGAGL------GLAIVRTIIEIHG 434
>gi|170693453|ref|ZP_02884612.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia graminis C4D1M]
gi|170141608|gb|EDT09777.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia graminis C4D1M]
Length = 433
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 437 LALAPLKQNGIRPCNVSDV---LGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G+ + D+ L D A PLA Q R V+L E S+S V + +L
Sbjct: 270 LALARSEPDGLAATDAIDLRALLSDCVLAYAPLA--QDRGVDLGIEASESATVIGDPESL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSEL 552
R +NL++ A T GG+V+ VS G +V I D GP + + F
Sbjct: 328 RVMFNNLVDNATKYTPRGGRVD-VSLHVEGGHPVVRIADSGPGIEPAERERVFNRFYRAG 386
Query: 553 FSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
EN V ++ + + GL + R + + +
Sbjct: 387 AGENRVRTDVAGSGL-GLAIVRRIATQHQAAI 417
>gi|398964197|ref|ZP_10680144.1| signal transduction histidine kinase [Pseudomonas sp. GM30]
gi|398148772|gb|EJM37440.1| signal transduction histidine kinase [Pseudomonas sp. GM30]
Length = 461
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 20/147 (13%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ R+ L ++ + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRTTLESSAQSTDRLTHLANQLLSLARVENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++S + +L A+ PLAH R V L+ E + + + E L + LSNL++ AL T
Sbjct: 322 DLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLVDNALAHTPP 379
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG V I+ AAP A++ ++DDGP +
Sbjct: 380 GGNV-ILRVAAP---AVLEVEDDGPGI 402
>gi|395786912|ref|ZP_10466639.1| PAS domain S-box protein [Bartonella tamiae Th239]
gi|423718169|ref|ZP_17692359.1| PAS domain S-box protein [Bartonella tamiae Th307]
gi|395423210|gb|EJF89406.1| PAS domain S-box protein [Bartonella tamiae Th239]
gi|395426602|gb|EJF92729.1| PAS domain S-box protein [Bartonella tamiae Th307]
Length = 806
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLT 546
++ LRQ L NL+ A+ T GG++ I +A + + + D+G M +L
Sbjct: 687 IDAQELRQILLNLLSNAIRFTPSGGRIVIHAALTSNHEVKISVSDNGIGMTAEEMTKALQ 746
Query: 547 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVEL 605
PF + D++ GL ++ L+E+ G ++S P++ GT +E+
Sbjct: 747 PFMQVARKDGRTGDDVFIGTGLGLPTSKSLVENNGGRFLLLSKPYR--------GTTIEM 798
Query: 606 WLPS 609
+ P+
Sbjct: 799 FFPT 802
>gi|344209283|ref|YP_004794424.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia JV3]
gi|343780645|gb|AEM53198.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia JV3]
Length = 467
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTNTGGRVRVQAARIPAGVQLIVED 398
>gi|310823134|ref|YP_003955492.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309396206|gb|ADO73665.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 431
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G +S+VL +L EA RP+A +++ S + L + + L Q +NL+E
Sbjct: 271 RKGGFERLCLSEVLENLVEAYRPVAEDHGQRLTAS-ICPKLFIQGDRSLLAQLFANLVEN 329
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
AL + G + + A G V + D GP + + PF
Sbjct: 330 ALRHSGRGSAIHLGLEAGADGGFTVTVSDTGPGIPSTEYENVFKPF 375
>gi|262197231|ref|YP_003268440.1| histidine kinase [Haliangium ochraceum DSM 14365]
gi|262080578|gb|ACY16547.1| histidine kinase [Haliangium ochraceum DSM 14365]
Length = 773
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 496 LSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE 555
SNLI A+ GG+V+ P G A++ I + G + PF S +
Sbjct: 669 FSNLITNAIKAAGSGGRVQATGKPRPEGGAIIRIQNTGVAVDVERGEQWFHPFAS---TT 725
Query: 556 NMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ V+ + GL + R +LE Y + +SP
Sbjct: 726 SKVDVTLGQGMGLGLPITRSILEEYSASIAFVSP 759
>gi|428206314|ref|YP_007090667.1| integral membrane sensor signal transduction histidine kinase
[Chroococcidiopsis thermalis PCC 7203]
gi|428008235|gb|AFY86798.1| integral membrane sensor signal transduction histidine kinase
[Chroococcidiopsis thermalis PCC 7203]
Length = 706
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 27/159 (16%)
Query: 468 HMQQRQVEL--SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-KVEIVSAAAPAGD 524
+QQ+ ++L +E + LLV + L+Q L N+I A+ T G ++I A P D
Sbjct: 493 QIQQKGLQLIATEWQEPLLVHADAAKLKQVLINVIGNAVKFTDRGSISIKIEVTAQPVQD 552
Query: 525 A------LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA---GLTVARE 575
V ++D G + Q PF MV+ T GL ++R
Sbjct: 553 GSTTFWVTVAVEDTGLGIDPAQQHKLFRPFA-------MVDGTTTRKLGGTGLGLAISRN 605
Query: 576 LLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPAPL 613
L+E G + + SP G G GT VE+ LP PL
Sbjct: 606 LIELMGGRIALSSP-------GIGLGTTVEISLPLVDPL 637
>gi|404404083|ref|ZP_10995667.1| two-component system sensor histidine kinase/response [Alistipes sp.
JC136]
Length = 1341
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
+VEL E L++ + L + LSNL+ A T VGG VEI +AA G + +
Sbjct: 921 RVELQEFDAGLIMWADIDKLEKMLSNLLSNACKYTPVGGHVEI-AAAERDGRVYTTVTNS 979
Query: 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 592
GP + H F F+ + + ++ GL+ + L+E + + + S
Sbjct: 980 GPGIAADKLPHIFERF----FTGHTYD---RYSSGVGLSYVKSLVELHDGAIEIES---- 1028
Query: 593 DAALGSGGTRVELWLPSPAPLSDLN 617
+ TR WLP A +S+++
Sbjct: 1029 ---CENEYTRFTFWLPVRAGVSEVH 1050
>gi|386720365|ref|YP_006186691.1| sensory histidine kinase [Stenotrophomonas maltophilia D457]
gi|384079927|emb|CCH14530.1| Sensory histidine kinase [Stenotrophomonas maltophilia D457]
Length = 463
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHGGGRVRVQAARVPAGVQLIVED 394
>gi|108761310|ref|YP_634131.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
gi|108465190|gb|ABF90375.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
Length = 463
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 466 LAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525
LA + VE S ++L V L QAL NL+ A+ + GG V + A G
Sbjct: 324 LARLLGLTVECSRPDEALWVRCNPTMLEQALGNLLHNAVTHGEAGGHVVALLEDAEPGRF 383
Query: 526 LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
+ + DDGP + L G F T GL++ REL G
Sbjct: 384 RLTVLDDGPGL----SAEELERLGERGFRAQATRRRATRGSGLGLSIVRELCHRVG 435
>gi|410648254|ref|ZP_11358668.1| sensor histidine kinase [Glaciecola agarilytica NO2]
gi|410132273|dbj|GAC07067.1| sensor histidine kinase [Glaciecola agarilytica NO2]
Length = 449
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF-- 548
AL QAL N+I A + G V+I +++ P L+ + D GP ++ L PF
Sbjct: 342 ALLQALDNIIGNACKYSASGELVQITTSSRPTS-VLITVRDHGPGVNEEEMSKLLQPFYR 400
Query: 549 -GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
G+E+ + F GL++A + + + +R+ +P GG +VE+ L
Sbjct: 401 AGNEMHTN---------GFGLGLSIALKAINKHKGELRMSTP-------DDGGLKVEIIL 444
Query: 608 PSPA 611
P A
Sbjct: 445 PKVA 448
>gi|390169338|ref|ZP_10221278.1| signal transduction histidine kinase [Sphingobium indicum B90A]
gi|389588091|gb|EIM66146.1| signal transduction histidine kinase [Sphingobium indicum B90A]
Length = 430
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R V+++L D+ E PL + +S +L+ + + Q+L+NL+E AL
Sbjct: 284 RDTQVAELLRDVEEIYGPLVEDSGLALAVSA-PDALVFPLHRELVSQSLANLVENALYYA 342
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+ G ++E+ SAA GD L+ + D+GP + ++ +L FG
Sbjct: 343 EGGDRIEL-SAAIENGDLLIAVADNGPGIPAESRAAALRRFG 383
>gi|389685266|ref|ZP_10176590.1| sensor histidine kinase [Pseudomonas chlororaphis O6]
gi|388550919|gb|EIM14188.1| sensor histidine kinase [Pseudomonas chlororaphis O6]
Length = 461
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ RS L + + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRSTLESAAQGTDRLTHLANQLLSLARIENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
++S + +L A+ PLAH + + L E + + + E L + LSNL++ AL T+ G
Sbjct: 322 DLSQLARELGMAMAPLAHARGIALAL-EADEPVWLRGEPTLLNELLSNLVDNALAHTRPG 380
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDM 536
G V I+ +AP A++ ++DDGP +
Sbjct: 381 GNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum
SW]
gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum
SW]
Length = 693
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
LV +E AL+Q LSNL+ A+ T GG++ + G L+ + D G M H
Sbjct: 548 LVRADETALKQILSNLLSNAVKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAH 607
Query: 544 SLTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGG 600
++ PF VE +T + GL + + L++ +G + S DA G
Sbjct: 608 AMEPF-------RQVEKPLTRHAGGAGLGLPLVKALVDLHGGSFELES--TPDA-----G 653
Query: 601 TRVELWLPS 609
T +WLP+
Sbjct: 654 TLASVWLPA 662
>gi|423096064|ref|ZP_17083860.1| sensor histidine kinase RpeA [Pseudomonas fluorescens Q2-87]
gi|397886826|gb|EJL03309.1| sensor histidine kinase RpeA [Pseudomonas fluorescens Q2-87]
Length = 433
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 494 QALSNLIEGALM----RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+AL NL+ A+ R QVG +V + +DDDG + + PF
Sbjct: 330 RALQNLLRNAMRYCEKRIQVGVRVSDRGCE-------IWVDDDGIGIPDSERERVFEPF- 381
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ + D T F GL ++R LE+ G + T A GG R LWLP+
Sbjct: 382 ---YRLDRSRDRATGGFGLGLAISRRALEAQGGTL-------TAEASPLGGARFRLWLPT 431
Query: 610 PA 611
P+
Sbjct: 432 PS 433
>gi|392395468|ref|YP_006432070.1| signal transduction histidine kinase [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526546|gb|AFM02277.1| signal transduction histidine kinase [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 561
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALSNLIEGAL 504
I P ++ DV+ + V PL ++++ + S + + +E L++ + NL+ AL
Sbjct: 397 IEPIDLVDVINAVENVVEPL--IEKKNISYSSVIDQDVPVIEGDREGLKRIVENLVSNAL 454
Query: 505 MRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563
T GG++++ VS + L+ + D+G + Q P+ E F ++ +
Sbjct: 455 KFTPKGGEIKVWVSYDQEQNEVLINVQDNGIGIRKEDQ-----PYIFEKFVQSDSSIHRQ 509
Query: 564 WNFVA-GLTVARELLESYGCVVRVIS 588
+N GL +A+EL E +G ++V+S
Sbjct: 510 YNGSGLGLALAKELAELHGGWIKVVS 535
>gi|255324955|ref|ZP_05366063.1| two-component system sensor kinase TcsS4 [Corynebacterium
tuberculostearicum SK141]
gi|255298015|gb|EET77324.1| two-component system sensor kinase TcsS4 [Corynebacterium
tuberculostearicum SK141]
Length = 375
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVESIADTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPDQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|398872626|ref|ZP_10627913.1| signal transduction histidine kinase [Pseudomonas sp. GM74]
gi|398202160|gb|EJM89011.1| signal transduction histidine kinase [Pseudomonas sp. GM74]
Length = 462
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLGGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|407781428|ref|ZP_11128647.1| non-motile and phage-resistance protein [Oceanibaculum indicum P24]
gi|407208311|gb|EKE78237.1| non-motile and phage-resistance protein [Oceanibaculum indicum P24]
Length = 397
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
L+Q ++NL+ A+ T GG V I G V D G M + L PF
Sbjct: 287 LKQVMTNLVANAIKFTPAGGDVAIGGQETEDGLCFWV-SDTGCGMTKEEAVRVLEPF--- 342
Query: 552 LFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+EDNMT + GL ++++L+E +G + + D+ G GTRV +WLP
Sbjct: 343 ----VQIEDNMTRSRGGTGLGLPISKDLVELHGGRLTI------DSEKGK-GTRVLVWLP 391
>gi|144899690|emb|CAM76554.1| osmolarity sensor protein [Magnetospirillum gryphiswaldense MSR-1]
Length = 441
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
+ R+++L + SL++ ++ A+ + +SNLI A + GG V V A A +++
Sbjct: 318 EGRELDL-HVEDSLVMPLKPQAMARVISNLIGNA---HRYGGHV-WVRVGKRAEAAEIIV 372
Query: 530 DDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
DDDGP + ++ PF S N+ T GLT+AR+++ +G V +
Sbjct: 373 DDDGPGIPVESREQVFKPFFRLERSRNLA----TGGVGLGLTIARDIVRGHGGDVLL--- 425
Query: 590 WKTDAALGSGGTRVEL 605
D+ LG RV L
Sbjct: 426 --EDSPLGGLRARVRL 439
>gi|392954661|ref|ZP_10320212.1| hypothetical protein WQQ_42840 [Hydrocarboniphaga effusa AP103]
gi|391857318|gb|EIT67849.1| hypothetical protein WQQ_42840 [Hydrocarboniphaga effusa AP103]
Length = 575
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
Q L NL AL Q GG+V+I + A +V + DDGP + + PF +F
Sbjct: 474 QVLLNLTMNALQVLQAGGRVQIAT-RKEAERWIVEVADDGPGVAAEDRRAIFEPF---VF 529
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
GL V R+++ +G + V D+AL GG WLP+P P
Sbjct: 530 KREG-------GIGLGLAVVRQIVRQHGGDIVV-----EDSAL--GGAAFRFWLPTPLP 574
>gi|386856882|ref|YP_006261059.1| sensor histidine kinase [Deinococcus gobiensis I-0]
gi|380000411|gb|AFD25601.1| sensor histidine kinase [Deinococcus gobiensis I-0]
Length = 422
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ D+ G+ + ++PLA +R +L Q + + L L NLI A+ T
Sbjct: 282 PVDLLDLAGEAVDLLQPLAS--RRGTDLWLDGQPTPLRGDSALLGSVLENLIGNAIKFTP 339
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM-TWNFV 567
GG+V++ G +V++D+GP F S +E V F
Sbjct: 340 EGGRVQVQVTPLRGGAGRLVVEDNGPG------------FPSGTLTEAFVRGQADVEGFG 387
Query: 568 AGLTVARELLESYGCVV 584
GL V RE++E++G +
Sbjct: 388 LGLAVVREVVEAHGGTL 404
>gi|92116063|ref|YP_575792.1| sensor signal transduction histidine kinase [Nitrobacter
hamburgensis X14]
gi|91798957|gb|ABE61332.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14]
Length = 607
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
L Q +SNL+ A ++ GG+V IV + D +V+DDDGP + E
Sbjct: 490 LGQVISNLLTNAQSFSKSGGRVRIVCRRLKS-DIEIVVDDDGPGIRPDALERVF-----E 543
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESY-GCVVRVISPWKTDAALGS--GGTRVELWLP 608
F + N GL+++++++E++ G + P DA + G R + LP
Sbjct: 544 RFYTDRPHQGFGQNSGLGLSISKQIIEAHRGRIWAENRPGPIDAHGDTRIAGARFVVRLP 603
Query: 609 SPAP 612
+PAP
Sbjct: 604 APAP 607
>gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1172
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQS-LLVAVEEPALRQALSNLIE 501
Q RPC++ D+ ++ E+ P + Q++++ L ++ S + LLV ++ + + NL+
Sbjct: 602 QPSFRPCSLVDLCRNIVESFTP--YCQKKELSLVTDFSDTCLLVYLDVEKFDKVIYNLLS 659
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
A+ T GG + I S + L+ ++D G + PF + F + N
Sbjct: 660 NAMKFTPAGGSIRI-SIESSQEYCLLKVEDTGIGIR-----QEQIPFLFQRFRQAEGSAN 713
Query: 562 MTWNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
++ GL + +EL+E +G + V S + GT ++W+
Sbjct: 714 RSYEGSGLGLALVKELVELHGAQISVESVY-------GQGTTFKVWM 753
>gi|182413629|ref|YP_001818695.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177840843|gb|ACB75095.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 1085
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALM 505
+RP + +L D +RP A Q+R ++EL+ V + L+Q N+++ A+
Sbjct: 776 LRPVSAEQILQDALSVIRPDAE-QKRITLVTELTAHRTTVRGDAVRLQQVFWNVLKNAVK 834
Query: 506 RTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPF--GSELFSENMVEDNM 562
T GG++ + SA GD L V + D+G M F G N +
Sbjct: 835 FTPAGGRITVTSANLRGGDTLRVAVRDNGIGMTPAEIARVFDAFTQGDHAVGSN---SHR 891
Query: 563 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
GLT++R L+E + +R S A G G T
Sbjct: 892 FGGLGLGLTISRLLVEQHHGDIRAES-----AGPGQGAT 925
>gi|83591667|ref|YP_425419.1| signal transduction histidine kinase [Rhodospirillum rubrum ATCC
11170]
gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase
[Rhodospirillum rubrum ATCC 11170]
Length = 620
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RPCN++ ++ + P + ++ + V +E A++Q L NL+ A+ T
Sbjct: 455 RPCNLAAIIRAAERMLGPRVREKGLVMDTVCVDGEAWVMADERAMQQVLLNLLSNAVKFT 514
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG++ + G ++V+ D GP + L PF + VE
Sbjct: 515 PEGGRITVSLGLNEGGGMVLVVGDTGPGIPAEHLALVLEPF----YQVGEVETRSHEGTG 570
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GL +A+ L+E + +R+ D+ G GTRV + LP+
Sbjct: 571 LGLPLAKALVEKHEGALRL------DSQPGQ-GTRVSVTLPA 605
>gi|386348349|ref|YP_006046597.1| periplasmic sensor Signal transduction histidine kinase
[Rhodospirillum rubrum F11]
gi|346716785|gb|AEO46800.1| periplasmic sensor Signal transduction histidine kinase
[Rhodospirillum rubrum F11]
Length = 580
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RPCN++ ++ + P + ++ + V +E A++Q L NL+ A+ T
Sbjct: 415 RPCNLAAIIRAAERMLGPRVREKGLVMDTVCVDGEAWVMADERAMQQVLLNLLSNAVKFT 474
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG++ + G ++V+ D GP + L PF + VE
Sbjct: 475 PEGGRITVSLGLNEGGGMVLVVGDTGPGIPAEHLALVLEPF----YQVGEVETRSHEGTG 530
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GL +A+ L+E + +R+ D+ G GTRV + LP+
Sbjct: 531 LGLPLAKALVEKHEGALRL------DSQPGQ-GTRVSVTLPA 565
>gi|410626749|ref|ZP_11337501.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola mesophila KMM
241]
gi|410153669|dbj|GAC24270.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola mesophila KMM
241]
Length = 660
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P + SD++ E+++ + +E+ SQ+L V + L Q++SN++ A+
Sbjct: 376 LEPTDFSDIVSFTIESLQSALDAKHHTLEIVGTSQALFVNGDSTRLVQSISNVLNNAIKY 435
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE-NMVEDNMTWN 565
T GG + + A A V+I D+G + Q ELF++ D
Sbjct: 436 TPEGGHITL-ECVADADTVQVIISDNGYGISPSMQGKVF-----ELFTQVQQTLDRSQGG 489
Query: 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGSG 599
GL + + L++ +G + V S LG G
Sbjct: 490 LGIGLNIVQRLVQMHGGSISVSS-----QGLGHG 518
>gi|358638419|dbj|BAL25716.1| putative histidine kinase [Azoarcus sp. KH32C]
Length = 395
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGS 550
L QA N+++ AL GG+V + + + G+A+ V I D GP + Q PF
Sbjct: 294 LNQAFFNILQNALQAVAGGGEVAVRTRSV--GEAITVEIADTGPGIPPDVQQRVFDPF-- 349
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
F+ V GLTVAR+++ ++G V +I P GGT V + LP
Sbjct: 350 --FTTREVGSGTGL----GLTVARDIVLAHGGSVSLICPPH-------GGTSVTIKLP 394
>gi|425446294|ref|ZP_18826302.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9443]
gi|389733523|emb|CCI02707.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9443]
Length = 418
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + I+ + DR+R + E + +
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEGQI 219
>gi|357634884|ref|ZP_09132762.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio sp. FW1012B]
gi|357583438|gb|EHJ48771.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio sp. FW1012B]
Length = 480
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
+L+Q L N++ A+ T GG+V + AA G+ + D GP + + H PF
Sbjct: 361 SLQQVLVNILLNAVQATPRGGRVTLSVAAGENGETCFAVADSGPGVSPEVRQHMFEPF-- 418
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-- 608
++ V GL VA L +G + V SP +GG + LP
Sbjct: 419 --YTTKGVGKGTGL----GLAVAYSLTRRHGGRIEVESPE-------TGGAVFTVCLPAA 465
Query: 609 ---SPAP 612
SPAP
Sbjct: 466 LAESPAP 472
>gi|428221168|ref|YP_007105338.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
gi|427994508|gb|AFY73203.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
Length = 387
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 436 PLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALR 493
PL L P+ + I N++++L +L + +A Q++Q++L S + L V ALR
Sbjct: 226 PLLLPPVLE--IVAVNLAEILENLLLSATAIA--QEKQLQLTSHIPHELPFVQGNAIALR 281
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+ L+NLI+ A+ T + GKV++V A + V + D G + H LF
Sbjct: 282 EVLNNLIDNAIKYTPMTGKVDVV-ATFNSEHVEVKVKDTGVGIDEFDLSH--------LF 332
Query: 554 SENMVEDNMTWNFVA---GLTVARELLESYGCVVRV 586
N N GL +AR+L+E ++V
Sbjct: 333 ERNFRGRQAKGNITGTGLGLAIARDLVEKMSGEIKV 368
>gi|296445085|ref|ZP_06887046.1| integral membrane sensor signal transduction histidine kinase
[Methylosinus trichosporium OB3b]
gi|296257506|gb|EFH04572.1| integral membrane sensor signal transduction histidine kinase
[Methylosinus trichosporium OB3b]
Length = 616
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 31/163 (19%)
Query: 463 VRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV----SA 518
+RPLA ++R L S+ L Q NLI+ A + G V + A
Sbjct: 467 IRPLADARRRWRVLGHDSR----------LAQVFDNLIDNARSFSAPGNGVRVTLRGEQA 516
Query: 519 AAPAGDAL----VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAR 574
P G L +++DDDGP + E F + E N GL+++R
Sbjct: 517 IGPGGQMLDGYEIIVDDDGPGIPADAFERIF-----ERFYTDRPEQGFGQNSGLGLSISR 571
Query: 575 ELLESYGCVVRVIS-----PWKTDAALGSG---GTRVELWLPS 609
+++E++ +R ++ P TD+A G R +WLP+
Sbjct: 572 QIVEAHNGRIRAMNRTKAEPEGTDSARPGDETVGARFVIWLPA 614
>gi|182414367|ref|YP_001819433.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
terrae PB90-1]
gi|177841581|gb|ACB75833.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
terrae PB90-1]
Length = 401
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
++ G+R V D L D +P A + QV + L V+ LRQ L NLIE
Sbjct: 237 IRSVGLRAA-VQDALDDALTLAQPRAIALENQVPVG-----LSAKVDAAKLRQVLGNLIE 290
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
A+ + G+V + A A + + DDGP + + F + +
Sbjct: 291 NAIKYGRERGRVVVQGRATGAAMVEIAVCDDGPGIPAEARSRVFERF----YRVDKARSR 346
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDA 594
GL++ + L++++G VRV S A
Sbjct: 347 EQGGTGLGLSIVKNLVQAHGGEVRVESELGRGA 379
>gi|154499724|ref|ZP_02037762.1| hypothetical protein BACCAP_03381 [Bacteroides capillosus ATCC
29799]
gi|150271322|gb|EDM98579.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 411
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S ++ D+ E A + + + LS + ++++ + + +A+ N+++ AL T+
Sbjct: 262 PENLSVLMQDVLERFETWAEREHKTITLSG-KEDVVLSCDALWVSEAIGNIVKNALEHTE 320
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG + + + +P + I DDG +H + F FS ++ +
Sbjct: 321 NGGHIGVKWSQSPLMTQ-IEISDDGKGIHPEDLYNIFKRFYRSRFSSDVHGIGL------ 373
Query: 569 GLTVARELLESYGCVVRVISP 589
GL +A+ ++E++G + V S
Sbjct: 374 GLPLAKSIVEAHGGTISVTSS 394
>gi|160900344|ref|YP_001565926.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
acidovorans SPH-1]
gi|333913582|ref|YP_004487314.1| PAS/PAC sensor signal transduction histidine kinase [Delftia sp.
Cs1-4]
gi|160365928|gb|ABX37541.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
acidovorans SPH-1]
gi|333743782|gb|AEF88959.1| PAS/PAC sensor signal transduction histidine kinase [Delftia sp.
Cs1-4]
Length = 464
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 479 LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538
L+Q+ VA L+ A SNL+ A+ T GG++E+ + P G A + D GP +
Sbjct: 323 LAQAGEVAGASAELQSAFSNLLANAMRYTPAGGRIEVTWESLPDGSARFAVQDSGPGI-- 380
Query: 539 MTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
+ L + + T GL + + +L+ +G + + S
Sbjct: 381 --EPKHLARLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHGAKLGITS 428
>gi|429767816|ref|ZP_19300000.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Brevundimonas diminuta 470-4]
gi|429189774|gb|EKY30593.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Brevundimonas diminuta 470-4]
Length = 486
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 508 QVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+ GGK I VSAA +A ++I D+GP + P +E E V + T
Sbjct: 400 ETGGKGAITVSAANEGAEAAILIADNGP---------GIPPRLAERLFEPFVSGSKTDGT 450
Query: 567 VAGLTVARELLESYGCVVRVI--SPWKTDAALGSGGTRVELWLP 608
GLT++REL ++G + ++ PW G R EL LP
Sbjct: 451 GLGLTISRELAANHGGSLTLVDTGPW---------GARFELRLP 485
>gi|428221709|ref|YP_007105879.1| histidine kinase [Synechococcus sp. PCC 7502]
gi|427995049|gb|AFY73744.1| histidine kinase [Synechococcus sp. PCC 7502]
Length = 425
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 441 PLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLI 500
PLK N C++S +L ++ E + +A Q +E+ + V + L + +NLI
Sbjct: 268 PLKVNDQNHCDLSQILSNVVEEQQIIAQNQNITIEVLSADVPVTVLGDRSQLVRLFTNLI 327
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
A+ T GGKV + A + A + I D G
Sbjct: 328 SNAINYTLAGGKVTVSLATINSHQAQIEITDTG 360
>gi|427402211|ref|ZP_18893283.1| hypothetical protein HMPREF9710_02879 [Massilia timonae CCUG 45783]
gi|425718984|gb|EKU81925.1| hypothetical protein HMPREF9710_02879 [Massilia timonae CCUG 45783]
Length = 439
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P +++++ E V P + +++ +++ + +L+V + L Q +NL+ A
Sbjct: 142 VEPLRLAELIEHAAETVMPRVRERGQELAIAQAADTLVVEGDRVRLTQVFTNLLNNASKY 201
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSEN-MVEDNMTWN 565
TQ GG++ + + AG V IDD+G M T + +LF++
Sbjct: 202 TQDGGRIAVAARVGAAGLVTVTIDDNGSGMSSETIGRAF-----DLFTQGPRTLARSEGG 256
Query: 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT-RVELWLPSPA 611
GL V R L+ +G V SP LG G T V L L S A
Sbjct: 257 LGVGLNVVRNLVTMHGGSVGAASPG-----LGRGSTFTVSLPLSSAA 298
>gi|398926540|ref|ZP_10662502.1| signal transduction histidine kinase [Pseudomonas sp. GM48]
gi|398170614|gb|EJM58545.1| signal transduction histidine kinase [Pseudomonas sp. GM48]
Length = 433
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 494 QALSNLIEGAL----MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+AL NL+ A+ R Q+G +V AG + +DDDG + + PF
Sbjct: 330 RALQNLLRNAMRYCEKRIQIGVQVY-------AGGCEIWVDDDGIGIPEDERERIFEPF- 381
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPWKTDAALGSGGTRVELWLP 608
+ + D T F GL ++R LE+ G + V SP GG R LWLP
Sbjct: 382 ---YRLDRSRDRATGGFGLGLAISRRALEAQGGTLTVEASP--------LGGARFRLWLP 430
Query: 609 S 609
+
Sbjct: 431 T 431
>gi|434401248|ref|YP_007135076.1| integral membrane sensor signal transduction histidine kinase
[Stanieria cyanosphaera PCC 7437]
gi|428272448|gb|AFZ38386.1| integral membrane sensor signal transduction histidine kinase
[Stanieria cyanosphaera PCC 7437]
Length = 454
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 437 LALAPLKQNG----IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L L L+QN +PC ++D++ DL E + LA + + V E L
Sbjct: 288 LLLVSLEQNSSPKPFQPCCLNDLIADLTEELAELATASNIHLTSQVPHFEIYVLGNESQL 347
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+ +SNLI A+ T GG V+ VS + +A++ I+D G
Sbjct: 348 YRLVSNLIANAIQYTSTGGYVQ-VSLSQSDHNAILAIEDTG 387
>gi|374291343|ref|YP_005038378.1| Sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357423282|emb|CBS86132.1| Sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 572
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+ ++L D V LA + + + ++L V + +RQA+ N++ A+ T GG
Sbjct: 426 LGELLDDCLGLVEALALRKGVTLSGDGIDRTLQVTADGVRMRQAVLNMLSNAIKFTPSGG 485
Query: 512 KVEIVSAAAPAG-DALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA-- 568
V + +AA P G A++VI D G M + ++ PF V + +T
Sbjct: 486 AVRMEAAAGPDGRGAVIVIADTGVGMTADELLIAMEPF-------RQVHNYLTKAEAGTG 538
Query: 569 -GLTVARELLESYGCVV 584
GL +AR +E++G +
Sbjct: 539 LGLPLARRFVEAHGGTL 555
>gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.]
Length = 1155
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEG 502
Q RPC++ D + + E+ RP + +++ + L +EL + V ++ + + NL+
Sbjct: 581 QPSFRPCDLVDFVSQIVESFRP--YCEKKALHLTTELDECPTVYIDMEKFDKVVYNLLSN 638
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
A+ T GG + V + ++ + D G + + P E F + +N
Sbjct: 639 AMKFTPEGGTIS-VKLQSQGHHCILQVQDTGIGI-----VKEQIPHLFERFRQAEGSENR 692
Query: 563 TWNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
++ GL + +EL+E +G V V D+ G GT LWL
Sbjct: 693 SYEGSGLGLALVKELVELHGGRVTV------DSVYGK-GTTFTLWL 731
>gi|408822484|ref|ZP_11207374.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas geniculata N1]
Length = 467
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVLVQAAHVPAGVQLIVED 398
>gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase
[Thermincola potens JR]
gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase
[Thermincola potens JR]
Length = 547
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
NV + + + + +RPLA QQ+ +++ S ++ + ++ +E +RQ + NL+ A+ T
Sbjct: 389 VNVGEAVRGVEKLLRPLA--QQKNIDMQSAITGTNVIIADEEKVRQVIRNLLGNAIKFTP 446
Query: 509 VGGKVEIV--SAAAPAGDALVVIDDDGPDM 536
GG++E+ P L+ + D GP +
Sbjct: 447 AGGRIELYVRDTDRPDEGVLLTVKDSGPGI 476
>gi|427429435|ref|ZP_18919465.1| histidine kinase [Caenispirillum salinarum AK4]
gi|425880164|gb|EKV28863.1| histidine kinase [Caenispirillum salinarum AK4]
Length = 450
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 24/151 (15%)
Query: 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVS 517
DL EA +P+A + + + ++A ALR+A+SNL++ A+ + GG+ +V+
Sbjct: 315 DLAEAGQPVACAE---------APTCVMACRPQALRRAVSNLVQNAV---RYGGRA-VVT 361
Query: 518 AAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL 577
A L+ +DDDGP + PF + T GL++ +
Sbjct: 362 LERAADAVLIHVDDDGPGIAEDQMERVFRPF----YRVEASRGRATGGVGLGLSIVASVA 417
Query: 578 ESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
++G VR+ A GG R L LP
Sbjct: 418 HAHGGDVRL-------ANRAGGGLRASLRLP 441
>gi|345873529|ref|ZP_08825436.1| integral membrane sensor signal transduction histidine kinase
[Thiorhodococcus drewsii AZ1]
gi|343917109|gb|EGV27920.1| integral membrane sensor signal transduction histidine kinase
[Thiorhodococcus drewsii AZ1]
Length = 479
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
+ L+V +L++ALSNLI+ A+ + GG V+ VS G L+ IDD GP +
Sbjct: 354 ERLIVRCRPVSLKRALSNLIDNAV---KYGGTVQ-VSLTTDDGQHLICIDDAGPGIPEDL 409
Query: 541 QMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
PF F T GL+VAR ++ ++G + +I+
Sbjct: 410 LEKVFAPF----FRLEASRSRETGGTGLGLSVARTIVHAHGGTLVLIN 453
>gi|451945603|ref|YP_007466238.1| two-component system sensor protein [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
gi|451904990|gb|AGF73876.1| two-component system sensor protein [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
Length = 371
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
QVE + + ++V + Q + NL+ AL T GG+V I +A + L+ + D
Sbjct: 241 QVEAATATARIIV--DRQRFGQVMGNLLTNALRHTPPGGQVRISAAQQGSDTVLIDVADT 298
Query: 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
G M H F + + + T GLT++R L+E++G + SP
Sbjct: 299 GDGMTTEQLSHIFERF----YRGDTARNRDTGGAGIGLTISRALVEAHGGTLTATSP 351
>gi|410658941|ref|YP_006911312.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. DCA]
gi|409021296|gb|AFV03327.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. DCA]
Length = 601
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
S +KL+ L + + E+ L++A + +G + N+++V+ L+ ++ A+
Sbjct: 421 SDSKLKTEYMDLMITEIDRANEILTDFLSVAKVSPDGTKEENINNVINRLYPMLQADAYN 480
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
+++ L EL+ + + E +RQ + NL+ AL T GKV I + A G L I
Sbjct: 481 SGKELIL-ELNDVPSINLNESEIRQLILNLVRNALEETAEKGKVYIKTYQAEEGIVL-AI 538
Query: 530 DDDGPDMHYMTQMHSLTPF 548
D G + Q TPF
Sbjct: 539 KDHGKGIPQSVQDTLGTPF 557
>gi|381397458|ref|ZP_09922868.1| ATP-binding region ATPase domain protein [Microbacterium
laevaniformans OR221]
gi|380775026|gb|EIC08320.1| ATP-binding region ATPase domain protein [Microbacterium
laevaniformans OR221]
Length = 380
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD-DGPDMHYMTQMH 543
++V+ L Q +NL++ AL T GG V + +A P G VV DD +G D ++ +
Sbjct: 255 LSVDPDRLGQVFANLLDNALRHTPAGGTVRLSAARTPTGVRFVVADDGEGIDHAHLPHLF 314
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
+ + D GL+V R L+ ++G V
Sbjct: 315 ------ERFYRVDSARDRAHGGSGIGLSVTRALVHAHGGTV 349
>gi|226939135|ref|YP_002794206.1| sensor protein RstB [Laribacter hongkongensis HLHK9]
gi|226714059|gb|ACO73197.1| Sensor protein [Laribacter hongkongensis HLHK9]
Length = 437
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
L +A+SNL+ A R GG+V + +A G ++ IDDDGP + ++ L PF
Sbjct: 325 LGRAVSNLLVNA--RRHAGGQVAL-TALWQDGQVVLHIDDDGPGIPADSREQVLKPFTRL 381
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611
S N T + GL + ++ + VR+ D A GG R+ L PSP
Sbjct: 382 DASRN----RKTGGYGLGLAIVTRIMHWHRGEVRI------DEAPELGGARLTLSWPSPL 431
Query: 612 PL 613
L
Sbjct: 432 TL 433
>gi|254521419|ref|ZP_05133474.1| two-component system sensor kinase [Stenotrophomonas sp. SKA14]
gi|219719010|gb|EED37535.1| two-component system sensor kinase [Stenotrophomonas sp. SKA14]
Length = 463
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHAGGRVLVQAARVPAGVQLIVED 394
>gi|82703325|ref|YP_412891.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
gi|82411390|gb|ABB75499.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
Length = 866
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 13/162 (8%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+V VL E RPL Q ++ +S +SLL+ + + Q +SNL+ A T
Sbjct: 571 VDVRAVLDAALELSRPLIKENQHRLFISNPKESLLLDADPTRMTQVVSNLLNNAAKYTSK 630
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE-NMVEDNMTWNFVA 568
GG++E+ SA + ++ + D+G +T L F ELFS+ D
Sbjct: 631 GGQIEL-SAERDGSEVIIRVRDNGVG---LTSEALLEVF--ELFSQVGKTLDRSQGGLGI 684
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
GL + + L+E + + S LG G T V + LP P
Sbjct: 685 GLALVKRLVEMHNGSITAESQ-----GLGQGSTFV-VRLPLP 720
>gi|374578549|ref|ZP_09651645.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM471]
gi|374426870|gb|EHR06403.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM471]
Length = 581
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + ++ +++ + +R+A+ NLI A+ +
Sbjct: 429 PVDVAALVKEVAEANQPLAVNKQQAISVTA-PVNIVTMCDTDRIREAIDNLISNAIKYSP 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GGK+ +V + GD +V + D+G +
Sbjct: 488 IGGKIGVV-VSHEGGDTIVRVSDEGAGL 514
>gi|171913996|ref|ZP_02929466.1| response regulator receiver sensor signal transduction histidine
kinase [Verrucomicrobium spinosum DSM 4136]
Length = 383
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++L + P+A +Q + L S+ + + + L QAL N++ A+ +
Sbjct: 213 PIDLKEILTSVGARHEPIAAAKQINIVLELASRPVTIKGDHEMLEQALENVVSNAIKFSP 272
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGP-----DMHYMTQMH---SLTPFGSELFSENMVED 560
VG + + + G A+ + D GP DM M + + S P G E +
Sbjct: 273 VGTTITLRAKTGTTGFAVCEVADQGPGFTEDDMSRMFRRYGRLSARPTGGEPSTG----- 327
Query: 561 NMTWNFVAGLTVARELLESYGCVVRVIS 588
GL++ + L+E G +R++S
Sbjct: 328 -------LGLSIVKRLIERMGGTIRMVS 348
>gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
G4]
gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
G4]
Length = 766
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 114/278 (41%), Gaps = 17/278 (6%)
Query: 319 IRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378
+RG + LS L+L R + D+ +QG R T +E D K ++
Sbjct: 347 VRGDARNCVALS--LTLRETRVQRRRDLRTQRSLQGAR---TARERADTSNRLKDELLAT 401
Query: 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLA 438
L+ N Y E +RS S++ ++ + + + S SL DI + LA
Sbjct: 402 VSHELRTPLNVIYGWVEVLRSA-SDDALQQQAIDAIDRSAH--SLTRMVGDI-LDASSLA 457
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
L+ + + P +V + D A + A +E + + +V+ + LRQ LSN
Sbjct: 458 TGKLRLDAM-PVDVVRLFADATSAFQTAASAAGIALEFDCTASACVVSGDAERLRQMLSN 516
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE-NM 557
L+ AL T GG V V+ A A++ + D G + P+ ++F +
Sbjct: 517 LVSNALKFTPAGGAVT-VTLTHDAAHAVLAVGDTGQGI-----ASEFIPYVFDMFRRADG 570
Query: 558 VEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ GL++ R + E +G VRV S + A
Sbjct: 571 SPASPRRGLGLGLSIVRHIAELHGGEVRVDSAGRNRGA 608
>gi|134281506|ref|ZP_01768214.1| sensor histidine kinase [Burkholderia pseudomallei 305]
gi|167900663|ref|ZP_02487868.1| sensor histidine kinase [Burkholderia pseudomallei NCTC 13177]
gi|134247173|gb|EBA47259.1| sensor histidine kinase [Burkholderia pseudomallei 305]
Length = 459
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
+++ V+ + E LA ++R+++L +EL L VA E L L NL++ A+
Sbjct: 313 VDIAAVVSGVLEEAIVLA--ERRRIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAH 370
Query: 509 VGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG+V + +A GDA+V+ + DDGP + + H F + D
Sbjct: 371 EGGRVTV--SARRDGDAVVLEVVDDGPGIPAEARPHVFKRF------YRVARDEEGTGL- 421
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GL + E+ +S+G V + + G+ G R+ + LP+
Sbjct: 422 -GLAIVEEIAQSHGGAVSLAT------GPGNRGVRMTVRLPA 456
>gi|119490530|ref|ZP_01622972.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
gi|119453858|gb|EAW35014.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
Length = 419
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQ 508
N+ +L DL + LA + Q + L++L QS+L+ E LRQA+ NL+ A T
Sbjct: 269 VNIVQILTDLATFYQDLA-LDQNFIFLTQLPQQSILIRAEPELLRQAIENLLNNAFKYTN 327
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG + + + ++ + D G + H F + + T F
Sbjct: 328 SGGTISL-KLIYESRWVMITVTDTGMGIPPKDLPHIFDRF----YRVDQARTRKTGGFGL 382
Query: 569 GLTVARELLESYGCVVRVIS 588
GL + ++++E++ VR S
Sbjct: 383 GLAIVKQIVEAHQGYVRATS 402
>gi|53717678|ref|YP_106664.1| sensor kinase [Burkholderia pseudomallei K96243]
gi|76809142|ref|YP_331670.1| sensor kinase protein [Burkholderia pseudomallei 1710b]
gi|126439832|ref|YP_001057096.1| sensor histidine kinase [Burkholderia pseudomallei 668]
gi|126454126|ref|YP_001064326.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
gi|167717408|ref|ZP_02400644.1| sensor histidine kinase [Burkholderia pseudomallei DM98]
gi|167736450|ref|ZP_02409224.1| sensor histidine kinase [Burkholderia pseudomallei 14]
gi|167822069|ref|ZP_02453540.1| sensor histidine kinase [Burkholderia pseudomallei 9]
gi|167843677|ref|ZP_02469185.1| sensor histidine kinase [Burkholderia pseudomallei B7210]
gi|167892151|ref|ZP_02479553.1| sensor histidine kinase [Burkholderia pseudomallei 7894]
gi|167908882|ref|ZP_02495973.1| sensor histidine kinase [Burkholderia pseudomallei 112]
gi|167916921|ref|ZP_02504012.1| sensor histidine kinase [Burkholderia pseudomallei BCC215]
gi|217423940|ref|ZP_03455440.1| sensor histidine kinase [Burkholderia pseudomallei 576]
gi|226193052|ref|ZP_03788662.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
gi|237814434|ref|YP_002898885.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
gi|242314519|ref|ZP_04813535.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
gi|254184104|ref|ZP_04890695.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
gi|254186569|ref|ZP_04893086.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
gi|254194777|ref|ZP_04901208.1| sensor histidine kinase [Burkholderia pseudomallei S13]
gi|254258554|ref|ZP_04949608.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
gi|254298628|ref|ZP_04966079.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
gi|403516709|ref|YP_006650842.1| sensor histidine kinase [Burkholderia pseudomallei BPC006]
gi|418539531|ref|ZP_13105123.1| sensor kinase protein [Burkholderia pseudomallei 1258a]
gi|418545690|ref|ZP_13110939.1| sensor kinase protein [Burkholderia pseudomallei 1258b]
gi|418552097|ref|ZP_13116991.1| sensor kinase protein [Burkholderia pseudomallei 354e]
gi|52208092|emb|CAH34022.1| sensor kinase protein [Burkholderia pseudomallei K96243]
gi|76578595|gb|ABA48070.1| sensor kinase protein [Burkholderia pseudomallei 1710b]
gi|126219325|gb|ABN82831.1| sensor histidine kinase [Burkholderia pseudomallei 668]
gi|126227768|gb|ABN91308.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
gi|157808715|gb|EDO85885.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
gi|157934254|gb|EDO89924.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
gi|169651527|gb|EDS84220.1| sensor histidine kinase [Burkholderia pseudomallei S13]
gi|184214636|gb|EDU11679.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
gi|217393003|gb|EEC33025.1| sensor histidine kinase [Burkholderia pseudomallei 576]
gi|225934652|gb|EEH30629.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
gi|237504735|gb|ACQ97053.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
gi|242137758|gb|EES24160.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
gi|254217243|gb|EET06627.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
gi|385364477|gb|EIF70192.1| sensor kinase protein [Burkholderia pseudomallei 1258a]
gi|385366465|gb|EIF72081.1| sensor kinase protein [Burkholderia pseudomallei 1258b]
gi|385373652|gb|EIF78663.1| sensor kinase protein [Burkholderia pseudomallei 354e]
gi|403072353|gb|AFR13933.1| sensor histidine kinase [Burkholderia pseudomallei BPC006]
Length = 459
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
+++ V+ + E LA ++R+++L +EL L VA E L L NL++ A+
Sbjct: 313 VDIAAVVSGVLEEAIVLA--ERRRIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAH 370
Query: 509 VGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG+V + +A GDA+V+ + DDGP + + H F + D
Sbjct: 371 EGGRVTV--SARRDGDAVVLEVVDDGPGIPAEARPHVFKRF------YRVARDEEGTGL- 421
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GL + E+ +S+G V + + G+ G R+ + LP+
Sbjct: 422 -GLAIVEEIAQSHGGAVSLAT------GPGNRGVRMTVRLPA 456
>gi|410661929|ref|YP_006914300.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. CF]
gi|409024285|gb|AFV06315.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. CF]
Length = 601
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
S +KL+ L + + E+ L++A + +G + N+++V+ L+ ++ A+
Sbjct: 421 SDSKLKTEYMDLMITEIDRANEILTDFLSVAKVSPDGTKEENINNVINRLYPMLQADAYN 480
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
+++ L EL+ + + E +RQ + NL+ AL T GKV I + A G L I
Sbjct: 481 SGKELIL-ELNDVPSINLNESEIRQLILNLVRNALEETAEKGKVYIKTYQAEEGIVL-AI 538
Query: 530 DDDGPDMHYMTQMHSLTPF 548
D G + Q TPF
Sbjct: 539 KDHGKGIPQSVQDTLGTPF 557
>gi|17547782|ref|NP_521184.1| transmembrane sensor histidine kinase transcription regulator
protein [Ralstonia solanacearum GMI1000]
gi|17430087|emb|CAD16772.1| probable transmembrane sensor histidine kinase transcription
regulator protein [Ralstonia solanacearum GMI1000]
Length = 433
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+AL NLI A+ + + + + A G + ++DDGP + + PF +
Sbjct: 325 RALLNLIRNAMRYARQA--ITVRAEAGTYGSLCLTVEDDGPGIPAAERARVFEPF----Y 378
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS-PAP 612
+ D T F GL + R + +G VR+ + GSGG R L LP+ P P
Sbjct: 379 RLDASRDRHTGGFGLGLAIVRRIALVHGGEVRLDTG-------GSGGARFVLLLPAMPLP 431
Query: 613 L 613
+
Sbjct: 432 M 432
>gi|254357349|ref|ZP_04973623.1| sensor histidine kinase [Burkholderia mallei 2002721280]
gi|148026413|gb|EDK84498.1| sensor histidine kinase [Burkholderia mallei 2002721280]
Length = 459
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
+++ V+ + E LA ++R+++L +EL L VA E L L NL++ A+
Sbjct: 313 VDIAAVVSGVLEEAIVLA--ERRRIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAH 370
Query: 509 VGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG+V + +A GDA+V+ + DDGP + + H F + D
Sbjct: 371 EGGRVTV--SARRDGDAVVLKVVDDGPGIPAEARPHVFKRF------YRVARDEEGTGL- 421
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GL + E+ +S+G V + + G+ G R+ + LP+
Sbjct: 422 -GLAIVEEIAQSHGGAVSLAT------GPGNRGVRMTVRLPA 456
>gi|158333496|ref|YP_001514668.1| hypothetical protein AM1_0268 [Acaryochloris marina MBIC11017]
gi|158303737|gb|ABW25354.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 386
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ PCN+ D++ + A++P H+Q + +E+ S +V ++ + Q NL+ AL
Sbjct: 240 VEPCNLHDLVAENIRALQP--HLQSQGMEICYPQTSEVVWIDRWQMLQVFDNLLSNALHF 297
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ GG++ + + L+ + D GP +
Sbjct: 298 SPQGGQITLTWQRFQT-EILIEVRDQGPGL 326
>gi|406953433|gb|EKD82690.1| hypothetical protein ACD_39C01152G0001, partial [uncultured
bacterium]
Length = 306
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+R CN+ D++ ++ VR A ++ ++ L + V+ ++QA+ N++ +
Sbjct: 154 LRLCNLKDIINEMLLLVRHEAARSNVRLVINFPENILQINVDAEKIKQAILNVLLNGIQA 213
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+ GG++EI + G + I ++GP++ + PF + S +
Sbjct: 214 IKDGGQIEI-GLSESEGKLHISIANNGPEIPSGLRERVFEPFFTTKPSGTGL-------- 264
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSN 621
GL + R+++E +G V + D+A G R+ L P D+NG+++
Sbjct: 265 --GLAITRKIVELHGGRVEL------DSAAGRTEFRIIL------PYGDINGQAD 305
>gi|337278056|ref|YP_004617527.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729132|gb|AEG91508.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis
TTB310]
Length = 720
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
++DVL E+ RP S SL V + L Q SNL+ A T+ G
Sbjct: 422 ELADVLRAAVESSRPEMERMGHDFRCSPPQASLPVHGDAVRLAQVFSNLLNNAAHYTERG 481
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE-NMVEDNMTWNFVAG 569
G++E+ SA A AG A V + D+G + P E+FS+ + G
Sbjct: 482 GRIEL-SAWAEAGQACVSVRDNGIGI-----APEQLPRLFEMFSQVDRRHSGAQSGLGIG 535
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
L++A+ L +G VRV S A LG G+ + LP AP
Sbjct: 536 LSLAQRLAGMHGGSVRVHS-----AGLGC-GSEFTVRLPLLAP 572
>gi|452965571|gb|EME70592.1| putative sensor histidine kinase [Magnetospirillum sp. SO-1]
Length = 544
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ + E +R A ++ + + L+Q L V+ LRQ L NL+ A+ T
Sbjct: 388 PTRIAPLVEECVELIRGPAGIKTIALATTGLNQDLEAVVDSRRLRQILLNLLSNAVKFTP 447
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG+V IV + A + ++D G M +LTPFG E
Sbjct: 448 EGGRV-IVEVESDAHQLSLTVNDTGIGMTPEEIAVALTPFGQNPSRLTSTETGTGL---- 502
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
GL +++ L E +G + + A++ GT V + LP P
Sbjct: 503 GLPLSKRLAEMHGGSIAI-------ASIPGRGTTVTVSLPLSPP 539
>gi|149200891|ref|ZP_01877866.1| PAS/PAC sensor hybrid histidine kinase [Roseovarius sp. TM1035]
gi|149145224|gb|EDM33250.1| PAS/PAC sensor hybrid histidine kinase [Roseovarius sp. TM1035]
Length = 440
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P V+DV+ + EA R A QR V + LV + ++AL+ L+E +
Sbjct: 273 LEPVAVADVVELVLEAYRDEA--AQRDVTILAEQTGTLVLADATLFQEALAQLVENGVRY 330
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
GG V++ A +G + + D+GP + + PF
Sbjct: 331 CGAGGCVKVAVAGERSGYHRITVSDNGPGFGAVDPALAFAPF 372
>gi|254251537|ref|ZP_04944855.1| hypothetical protein BDAG_00726 [Burkholderia dolosa AUO158]
gi|124894146|gb|EAY68026.1| hypothetical protein BDAG_00726 [Burkholderia dolosa AUO158]
Length = 448
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATVREPVDLHALLAECVAAYAPLA--QRRGIDLGFEEARAATVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|94314592|ref|YP_587801.1| sensory histidine kinase in two-component regulatory system with
CopR, senses copper ions [Cupriavidus metallidurans
CH34]
gi|93358444|gb|ABF12532.1| sensory histidine kinase in two-component regulatory system with
CopR, senses copper ions [Cupriavidus metallidurans
CH34]
Length = 462
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
G LFE LA + +QV L L +V + LR+ALSNL+ AL T G V +V
Sbjct: 320 GALFEFYEALA--EDKQVAL-RLQGDGIVEGDRLMLRRALSNLLSNALRHTPQAGAV-VV 375
Query: 517 SAAAPAGDALVVIDDDGPDM 536
A A +V +++DGP++
Sbjct: 376 EAHAEGDSVVVAVENDGPEI 395
>gi|32474484|ref|NP_867478.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32445022|emb|CAD75024.1| probable sensory transduction histidine kinase [Rhodopirellula
baltica SH 1]
Length = 304
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 32/185 (17%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L A L+ + P +++D + + +A + A Q VEL L + + AL+
Sbjct: 145 LRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQD--VELQRYLDPDLPSIRLHSDALQS 202
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-----DDGPDMHYMTQMHSLTPFG 549
AL NL++ AL GG++ + + G L +ID DD +H +S G
Sbjct: 203 ALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVLHMFEPFYSTKDGG 262
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
S L GL AR+++E++G + V S GT+ L P
Sbjct: 263 SGL----------------GLPTARKIIEAHGARISVQSETGR-------GTKFSLQFPV 299
Query: 610 PAPLS 614
PA L
Sbjct: 300 PARLG 304
>gi|311739316|ref|ZP_07713152.1| two component system sensor kinase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305614|gb|EFQ81681.1| two component system sensor kinase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 370
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 ----PD-MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
PD + Y+ + + + GLT+++ L+E++G + S
Sbjct: 300 EGIPPDQLGYIFE---------RFYRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATS 350
Query: 589 P 589
P
Sbjct: 351 P 351
>gi|221211365|ref|ZP_03584344.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD1]
gi|221168726|gb|EEE01194.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD1]
Length = 448
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
L G L L A+ KA + E + +A + ++ ++ +R + + LQ+
Sbjct: 200 LNGLLARLSGALDTQKAFVADAAHELRTPL--AAVQIQAQLVARAKDDAARREALDDLQH 257
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR-PCNVSDVLGDLFEAVRPLAHMQQRQVE 475
T A + + LA A +R P ++ +L + A PLA Q+R ++
Sbjct: 258 GV------TRATRLAEQLLALARAEPDAGAVREPVDLQTLLAECVAAHAPLA--QRRNID 309
Query: 476 LS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
L E +++ V + ALR NL++ A+ T GG++++ AG A V I D GP
Sbjct: 310 LGFEETRAATVVADVGALRVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGP 369
Query: 535 DM 536
+
Sbjct: 370 GI 371
>gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
Length = 1207
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++P + +++ EA R Q+EL+ + V V+ + Q ++NLI A+
Sbjct: 791 MQPVVLDELVRQTIEANRGFGQQYNVQIELTATLPGVQVYVDPDRMTQVITNLISNAVKF 850
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+ G KVE+ P G + + D GP + + F ++ S N + T
Sbjct: 851 SPPGCKVEVAIGREPQGRVRITVTDHGPGIPPEFRDRIFQKF-AQADSSNTRQQGGTG-- 907
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
GL+++R ++E +G + ++ A G G T
Sbjct: 908 -LGLSISRAIVERHGGQIGFVT------ATGVGTT 935
>gi|71908760|ref|YP_286347.1| sensor histidine kinase [Dechloromonas aromatica RCB]
gi|71848381|gb|AAZ47877.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
region:Histidine kinase A, N-terminal [Dechloromonas
aromatica RCB]
Length = 478
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++ L D +AVR L + V+ +L ++L V ++ A+ AL NL+ A +
Sbjct: 331 VKFAEWLSDEVDAVRLLGRQLEVVVDTGKLPENLFVDLDRKAMPYALRNLLRNAF---KY 387
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
K V+A + + +DDDG + + H + F + L + D T + G
Sbjct: 388 ASKRISVNAELVGENIQIHVDDDGIGIPLEEREHIFSAF-TRL---DRSRDRSTGGYGLG 443
Query: 570 LTVARELLESYG 581
L +AR +LE +G
Sbjct: 444 LAIARRVLELHG 455
>gi|383774948|ref|YP_005454017.1| two-component sensor histidine kinase [Bradyrhizobium sp. S23321]
gi|381363075|dbj|BAL79905.1| two-component sensor histidine kinase [Bradyrhizobium sp. S23321]
Length = 432
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L +F+ + PLA +Q ++E + +++A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIFQVADGLEPLARERQVEIETNLPEAPVMIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIV--SAAAPAG--DALVVIDDDGPDM 536
L GG+V + SAAAP G + +++ D GP +
Sbjct: 327 LKYGASGGRVIVSMNSAAAPDGTPEIRILVRDFGPGI 363
>gi|378950248|ref|YP_005207736.1| protein QseC [Pseudomonas fluorescens F113]
gi|359760262|gb|AEV62341.1| QseC [Pseudomonas fluorescens F113]
Length = 433
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 28/125 (22%)
Query: 494 QALSNLIEGAL----MRTQVGGKVEIVSAAAPAGD--ALVVIDDDGPDMHYMTQMHSLTP 547
+AL NL+ A+ R QVG V GD + +DDDG + + P
Sbjct: 330 RALQNLLRNAMRYCEKRIQVGVLV---------GDQGCEIWVDDDGIGIPDSERERVFEP 380
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPWKTDAALGSGGTRVELW 606
F + + D T F GL ++R LE+ G + V SP GG R LW
Sbjct: 381 F----YRLDRSRDRATGGFGLGLAISRRALEAQGGTLTVEASP--------LGGARFRLW 428
Query: 607 LPSPA 611
LP+PA
Sbjct: 429 LPTPA 433
>gi|350269162|ref|YP_004880470.1| putative two-component histidine kinase [Oscillibacter
valericigenes Sjm18-20]
gi|348594004|dbj|BAK97964.1| putative two-component histidine kinase [Oscillibacter
valericigenes Sjm18-20]
Length = 559
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 26/127 (20%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541
L V +E ++Q L NL+ L GG++E+ + + PAG L V DDG M
Sbjct: 443 GLAVYADEAEMKQVLVNLVSNGLKAVGQGGRIELRAESGPAGVLLSVT-DDGTGMD---- 497
Query: 542 MHSLTPFGSELFSENMVEDNMTWNFVA--GLTVARELLESYGCVVRV-ISPWKTDAALGS 598
G +L S VE +T GL + LLE G +++ SP
Sbjct: 498 -------GEKLRS---VEKGITSGGTGRYGLAIVSRLLEQNGGEMKIRSSP--------G 539
Query: 599 GGTRVEL 605
GGTR+E+
Sbjct: 540 GGTRIEM 546
>gi|338813829|ref|ZP_08625911.1| integral membrane sensor signal transduction histidine kinase
[Acetonema longum DSM 6540]
gi|337274179|gb|EGO62734.1| integral membrane sensor signal transduction histidine kinase
[Acetonema longum DSM 6540]
Length = 420
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRT 507
P ++S+++G + E +PLA M Q+ELS +++Q + + ++ L Q + L++ A T
Sbjct: 270 PLDISELIGTVAEQFKPLAEMN--QIELSVQITQKVELIADKERLHQLVVILLDNAFKYT 327
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG 533
GG++ ++S A++ + D G
Sbjct: 328 PAGGQI-LISCFTADKQAVIYVQDTG 352
>gi|53724236|ref|YP_104203.1| sensor histidine kinase [Burkholderia mallei ATCC 23344]
gi|67641559|ref|ZP_00440335.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
gi|121600141|ref|YP_994555.1| sensor histidine kinase [Burkholderia mallei SAVP1]
gi|124385730|ref|YP_001027829.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
gi|126449949|ref|YP_001082223.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
gi|167001628|ref|ZP_02267422.1| sensor histidine kinase [Burkholderia mallei PRL-20]
gi|167813525|ref|ZP_02445205.1| sensor histidine kinase [Burkholderia pseudomallei 91]
gi|254174869|ref|ZP_04881530.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
gi|254201275|ref|ZP_04907639.1| sensor histidine kinase [Burkholderia mallei FMH]
gi|254206616|ref|ZP_04912967.1| sensor histidine kinase [Burkholderia mallei JHU]
gi|386860167|ref|YP_006273116.1| sensor kinase protein [Burkholderia pseudomallei 1026b]
gi|418537394|ref|ZP_13103034.1| sensor kinase protein [Burkholderia pseudomallei 1026a]
gi|52427659|gb|AAU48252.1| sensor histidine kinase [Burkholderia mallei ATCC 23344]
gi|121228951|gb|ABM51469.1| sensor histidine kinase [Burkholderia mallei SAVP1]
gi|124293750|gb|ABN03019.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
gi|126242819|gb|ABO05912.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
gi|147747169|gb|EDK54245.1| sensor histidine kinase [Burkholderia mallei FMH]
gi|147752158|gb|EDK59224.1| sensor histidine kinase [Burkholderia mallei JHU]
gi|160695914|gb|EDP85884.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
gi|238522512|gb|EEP85956.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
gi|243062638|gb|EES44824.1| sensor histidine kinase [Burkholderia mallei PRL-20]
gi|385350103|gb|EIF56655.1| sensor kinase protein [Burkholderia pseudomallei 1026a]
gi|385657295|gb|AFI64718.1| sensor kinase protein [Burkholderia pseudomallei 1026b]
Length = 459
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
+++ V+ + E LA ++R+++L +EL L VA E L L NL++ A+
Sbjct: 313 VDIAAVVSGVLEEAIVLA--ERRRIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAH 370
Query: 509 VGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG+V + +A GDA+V+ + DDGP + + H F + D
Sbjct: 371 EGGRVTV--SARRDGDAVVLEVVDDGPGIPAEARPHVFKRF------YRVARDEEGTGL- 421
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
GL + E+ +S+G V + + G+ G R+ + LP+
Sbjct: 422 -GLAIVEEIAQSHGGAVSLAT------GPGNRGVRMTVRLPA 456
>gi|406963451|gb|EKD89494.1| integral membrane sensor signal transduction histidine kinase
[uncultured bacterium]
Length = 154
Score = 40.0 bits (92), Expect = 3.8, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N++D + +L V L+ Q R V L+ + + + L+Q L +++ A+ T
Sbjct: 7 PVNMADFMPELLRQVERLS--QTRSVLLNHEINPIKINADPVRLKQVLLIILDNAVRNTP 64
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGP 534
GG V I A+ A LV IDD+GP
Sbjct: 65 SGGTVGI-KVASSANKGLVEIDDNGP 89
>gi|300780102|ref|ZP_07089958.1| sensor histidine kinase [Corynebacterium genitalium ATCC 33030]
gi|300534212|gb|EFK55271.1| sensor histidine kinase [Corynebacterium genitalium ATCC 33030]
Length = 398
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V V+ Q + NL+ AL T GG+V++ A AL+ I D G + H
Sbjct: 251 VMVDRQRFGQVMGNLLSNALRHTPTGGRVQVTVRQQGASAALIDITDTGDGIPPDQLEHI 310
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRV 603
F + + GLT++R L+E++G + SP G+G G+
Sbjct: 311 FERF----YRGDTARSRDKGGAGIGLTISRALIEAHGGTLTAASP-------GAGHGSVF 359
Query: 604 ELWLPSPAPLSD 615
L LP +P+ +
Sbjct: 360 TLRLPLSSPVKE 371
>gi|405355837|ref|ZP_11024949.1| sensor histidine kinase [Chondromyces apiculatus DSM 436]
gi|397091109|gb|EJJ21936.1| sensor histidine kinase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 463
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
VE S ++L V L QAL NL+ A+ + GG V V A G + + DDG
Sbjct: 332 VECSRPDEALWVRCNPTMLEQALGNLLHNAVTHGEEGGHVVAVLEDAEPGRFRLTVLDDG 391
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
P + L G F T GL++ REL G
Sbjct: 392 PGL----TAEELGRMGERGFRTQATRRRATRGSGLGLSIVRELCHRVG 435
>gi|346991965|ref|ZP_08860037.1| integral membrane sensor signal transduction histidine kinase
[Ruegeria sp. TW15]
Length = 480
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
++ +LV +LR+ALSNLI+ AL + G + E V A A ++++D G D+
Sbjct: 368 TRRILVMGRPISLRRALSNLIDNAL---KYGRRAE-VELETDAQSATIIVEDKGTDLSVD 423
Query: 540 TQMHSLTPF--GSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
L PF GS + S + F GLT+AR + E +G
Sbjct: 424 DIEALLAPFQRGSNIGSSD--------GFGLGLTIARTVAEQHG 459
>gi|346309636|ref|ZP_08851716.1| hypothetical protein HMPREF9457_03425 [Dorea formicigenerans
4_6_53AFAA]
gi|345898435|gb|EGX68314.1| hypothetical protein HMPREF9457_03425 [Dorea formicigenerans
4_6_53AFAA]
Length = 332
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S ++ D+ E A + + + LS +++ ++ + + +A+ N+++ AL T
Sbjct: 183 PENLSVLIQDILERFEVWAKRENKTITLSG-KENVFLSCDALWISEAVGNIVKNALEHTV 241
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG + + P +VV +DDG +H + F FS++ T
Sbjct: 242 EGGHIIVHLEQNPLMTQIVV-EDDGKGIHPEDLYNIFKRFYRSRFSQD------THGIGL 294
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
GL +A+ ++E +G + V S LG G T
Sbjct: 295 GLPLAKAIVEMHGGTISVTSK------LGIGTT 321
>gi|449134508|ref|ZP_21770004.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
europaea 6C]
gi|448886783|gb|EMB17176.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
europaea 6C]
Length = 281
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 32/185 (17%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L A L+ + P +++D + + +A + A Q VEL L + + AL+
Sbjct: 122 LRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQD--VELQRYLDPDLPSIRLHSDALQS 179
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-----DDGPDMHYMTQMHSLTPFG 549
AL NL++ AL GG++ + + G L +ID DD +H +S G
Sbjct: 180 ALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVLHMFEPFYSTKDGG 239
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
S L GL AR+++E++G + V S GT+ L P
Sbjct: 240 SGL----------------GLPTARKIIEAHGARISVQSETGR-------GTKFSLQFPV 276
Query: 610 PAPLS 614
PA L
Sbjct: 277 PARLG 281
>gi|89901133|ref|YP_523604.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
T118]
gi|89345870|gb|ABD70073.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
T118]
Length = 602
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 19/180 (10%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P +S+ D + P A +V + V + L+Q + NL+ A+
Sbjct: 300 MEPVLLSEKFSDCRAMIDPQAQKAGIRVSFASFDSPCFVEADRTRLKQVIVNLLSNAIKY 359
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
+ GG VE+ + AG + + D GP + PF + L E ++
Sbjct: 360 NRAGGSVEVTCSTPAAGRIRISVIDTGPGLSDNKLAQLFQPF-NRLGQEAGTQEGTG--- 415
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW----LPSPAPLSDLNGKSNE 622
GL V + L+E G + V + +GS E W L +P P + ++G+++E
Sbjct: 416 -IGLVVCKRLVEMMGGEIGV----HSRVGIGS-----EFWFELKLAAPPP-TAVSGEASE 464
>gi|398803258|ref|ZP_10562364.1| signal transduction histidine kinase [Polaromonas sp. CF318]
gi|398097137|gb|EJL87449.1| signal transduction histidine kinase [Polaromonas sp. CF318]
Length = 572
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGAL-MRTQVGGKVEIVSAAAPAGDALVVIDD 531
+ ++ S + +V E LR+ + NL++ AL + G +E+ + G A + +
Sbjct: 432 RTRITATSDNAVVVFEPEHLRRLMINLLDNALRYASDSAGAIEVATQNVAPGQARLSVWS 491
Query: 532 DGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
DG + Q H PF FS + GL + REL E YG ++
Sbjct: 492 DGQPLEQTVQTHLFEPF----FSSESRSSGL------GLYICRELCERYGAMI 534
>gi|19554153|ref|NP_602155.1| two-component system, sensory transduction histidine kinase
[Corynebacterium glutamicum ATCC 13032]
gi|62391808|ref|YP_227210.1| two component sensor kinase [Corynebacterium glutamicum ATCC 13032]
gi|21325737|dbj|BAC00358.1| Two-component system, sensory transduction histidine kinases
[Corynebacterium glutamicum ATCC 13032]
gi|41327150|emb|CAF20994.1| probable two component sensor kinase [Corynebacterium glutamicum
ATCC 13032]
gi|385145043|emb|CCH26082.1| two-component system, sensory transduction histidine kinase
[Corynebacterium glutamicum K051]
Length = 399
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ + ++ V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETIMDTVRVLVDRQRFGQVMSNLLSNALRYTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|425898047|ref|ZP_18874638.1| sensor histidine kinase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397891735|gb|EJL08213.1| sensor histidine kinase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 461
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T+ GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTRPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|161523861|ref|YP_001578873.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|189351378|ref|YP_001947006.1| OmpR family two-component system sensor histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|221200186|ref|ZP_03573229.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2M]
gi|221206661|ref|ZP_03579673.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2]
gi|421477153|ref|ZP_15924999.1| GHKL domain protein [Burkholderia multivorans CF2]
gi|160341290|gb|ABX14376.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|189335400|dbj|BAG44470.1| OmpR family two-component system sensor histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|221173316|gb|EEE05751.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2]
gi|221180425|gb|EEE12829.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2M]
gi|400227021|gb|EJO57045.1| GHKL domain protein [Burkholderia multivorans CF2]
Length = 448
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
L G L L A+ KA + E + +A + ++ ++ +R + + LQ+
Sbjct: 200 LNGLLARLSGALDTQKAFVADAAHELRTPL--AAVQIQAQLVARAKDDAARREALDDLQH 257
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR-PCNVSDVLGDLFEAVRPLAHMQQRQVE 475
T A + + LA A +R P ++ +L + A PLA Q+R ++
Sbjct: 258 GV------TRATRLAEQLLALARAEPDAGAVREPVDLQTLLAECVAAHAPLA--QRRNID 309
Query: 476 LS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
L E +++ V + ALR NL++ A+ T GG++++ AG A V I D GP
Sbjct: 310 LGFEETRAATVVADVGALRVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGP 369
Query: 535 DM 536
+
Sbjct: 370 GI 371
>gi|145224469|ref|YP_001135147.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium gilvum PYR-GCK]
gi|315444805|ref|YP_004077684.1| histidine kinase [Mycobacterium gilvum Spyr1]
gi|145216955|gb|ABP46359.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium gilvum PYR-GCK]
gi|315263108|gb|ADT99849.1| histidine kinase [Mycobacterium gilvum Spyr1]
Length = 380
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
L+ +E L Q L NL++ AL T GG+VEI + + DDG +
Sbjct: 263 LLRADEQRLSQVLDNLLDNALRHTARGGRVEI-HCHTEGARVRIAVTDDGEGI----AAE 317
Query: 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTR 602
L+ + + D GL +A+ L+E++G V T A+ G+G G
Sbjct: 318 HLSSVFERFYRADAARDREHGGAGLGLAIAKALVEAHGGSV-------TAASDGAGTGAT 370
Query: 603 VELWLPSPAP 612
+ LP+ P
Sbjct: 371 FTVELPTTRP 380
>gi|424921897|ref|ZP_18345258.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
gi|404303057|gb|EJZ57019.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
Length = 461
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AAP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVAAP---AVLEVEDDGPGI 402
>gi|167035383|ref|YP_001670614.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
gi|166861871|gb|ABZ00279.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
Length = 459
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVVAP---AVLEVEDDGPGI 402
>gi|334339095|ref|YP_004544075.1| ATP-binding protein [Desulfotomaculum ruminis DSM 2154]
gi|334090449|gb|AEG58789.1| ATP-binding region ATPase domain protein [Desulfotomaculum ruminis
DSM 2154]
Length = 414
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+ + L D + A ++ +++ L S+++ + +E L +A+SN+I+ AL T+
Sbjct: 268 IKEFLEDTIKGFHTRAELENKEIRLV-CSKNITMNFDEEWLLEAVSNIIKNALDHTKAKD 326
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
K+EI A + + I D+G +H H F FS+ GLT
Sbjct: 327 KIEI-HCAETSILTTITITDNGTGIHSEDIHHIFKRFYRSRFSKE------RQGIGIGLT 379
Query: 572 VARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLPSPAPL 613
+++ ++E +G + V S P K GT L P L
Sbjct: 380 LSKAIIEKHGGSITVESKPGK--------GTAFRLTFPKLTNL 414
>gi|294010702|ref|YP_003544162.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
gi|292674032|dbj|BAI95550.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
Length = 473
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R V+++L D+ E PL + +S +L+ + + Q+L+NL+E AL
Sbjct: 327 RDTQVAELLRDVEEIYGPLVEDSGFALAVSA-PDALVFPLHRELVSQSLANLVENALYYA 385
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+ G ++E+ SAA GD L+ + D+GP + ++ +L FG
Sbjct: 386 EGGDRIEL-SAAIENGDLLIAVADNGPGIPAESRPAALRRFG 426
>gi|27377808|ref|NP_769337.1| two-component VirA-like sensor kinase [Bradyrhizobium japonicum
USDA 110]
gi|27350953|dbj|BAC47962.1| VirA-like protein [Bradyrhizobium japonicum USDA 110]
Length = 831
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 31/153 (20%)
Query: 475 ELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV--------------SAAA 520
E+ E + +V E L+Q + NL A + G++E+ S
Sbjct: 546 EVDETADIAIVTGEPAQLQQVILNLCNNAAQAMKEPGRIELRIKVHDLVKPLSIGRSEVG 605
Query: 521 PAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY 580
P ++ + D GP M T PF + N + GL RE++E +
Sbjct: 606 PGRFTVISVADPGPGMDEATLERIFEPFFTTRPDGNGL----------GLATVREIVEQH 655
Query: 581 GCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 613
G V V S + DA GTR ++WLPS P+
Sbjct: 656 GGAVAVQS--RPDA-----GTRFDIWLPSGEPV 681
>gi|425457232|ref|ZP_18836938.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9807]
gi|389801469|emb|CCI19358.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9807]
Length = 418
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + I+ + DR+R + E + +
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI 219
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-----PDMHY 538
L+ P LR+ SNLI+ AL T GGKV V +V D G D
Sbjct: 289 LIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNVKNSVEIVFKDTGYGIPTSDQER 347
Query: 539 MTQMHSL-TPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ Q H G ++ + GL +A+EL+ S G + ISP
Sbjct: 348 IFQRHYRGVQAGGDIAGTGL-----------GLAIAKELITSMGGTIEFISP 388
>gi|387900790|ref|YP_006331129.1| sensor signal transduction histidine kinase [Burkholderia sp.
KJ006]
gi|387575682|gb|AFJ84398.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia sp. KJ006]
Length = 455
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 470 QQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
Q+R ++L ++L + L VA + L +SNL++ A+ TQ GG V + AA GDA+V+
Sbjct: 328 QRRAIDLGADLGERLDVAGSDSLLSALVSNLVDNAVRYTQPGGCVTV--AARRDGDAVVL 385
Query: 529 -IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
+ DDGP + + H F + D GL + RE+ +++G
Sbjct: 386 DVIDDGPGIPAEARPHVFKRF------YRVSADTEGSGL--GLAIVREIAQAHG 431
>gi|57235086|ref|YP_180919.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
195]
gi|57225534|gb|AAW40591.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
195]
Length = 503
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+ + +LGD+ E +RP A + + +E L+ V+ +Q + N++ AL T G
Sbjct: 352 DCTRLLGDIIEFIRPQAQAKNQTLEAGFQPNLPLIEVDPVRFKQIVMNILGNALKFTSQG 411
Query: 511 GKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFS 554
G +++ + G LV+ I D+G + + Q LT + L S
Sbjct: 412 GFIKM--SVFQKGRCLVICIKDNGRGISKVKQRRLLTSYDDRLIS 454
>gi|318041851|ref|ZP_07973807.1| two-component sensor histidine kinase [Synechococcus sp. CB0101]
Length = 438
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNL 499
AP +Q+ R ++ D+ DL R A QQ Q++ ++L + ++ LR+ LSNL
Sbjct: 283 APDQQHWQR-FDLCDLAEDLVALYRDRAASQQLQLK-ADLQRPAMIHGHPEQLRRLLSNL 340
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE 559
+ A+ T GG V + +VV+DD+GP + + F + +
Sbjct: 341 LVNAMQFTPPGGSVAL-QVQLQGHQVMVVVDDEGPGIPAAQRRLVFERFWQADAARSGPN 399
Query: 560 DNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611
+ GL++AR + + +G V+ SGG R+ + LP+ A
Sbjct: 400 SGL------GLSIARGIAQVHGGVIEAQGS-------SSGGCRMAVQLPAAA 438
>gi|449018291|dbj|BAM81693.1| probable two-component sensor histidine kinase [Cyanidioschyzon
merolae strain 10D]
Length = 911
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
+SN++ Q + P+++++T K+L + +++ D+ DI+VQ +RL L L D V L
Sbjct: 456 LSNILHQAKSPITALRTFGKLLLRRLPPGDVNRDLARDIIVQCERLNELLSPL-DTVTLQ 514
Query: 372 KANI 375
A +
Sbjct: 515 VAQL 518
>gi|398826228|ref|ZP_10584487.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
gi|398221661|gb|EJN08065.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
Length = 432
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVL---GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L + + + PLA +Q +VE+ Q +L+A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIRQVADGLEPLARERQVEVEIHLPEQPVLIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL----VVIDDDGPDM 536
L GG+V + A+ A D +++ D GP +
Sbjct: 327 LKYGASGGRVIVSLASGTANDGTQEVRIMVRDFGPGI 363
>gi|333984936|ref|YP_004514146.1| integral membrane sensor signal transduction histidine kinase
[Methylomonas methanica MC09]
gi|333808977|gb|AEG01647.1| integral membrane sensor signal transduction histidine kinase
[Methylomonas methanica MC09]
Length = 435
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
+ R+ + NL+E AL + GG+ I V+ G + + D GP + PF
Sbjct: 329 SFRRCIGNLLENAL---RYGGEGNIHVARRCINGSIFIGVRDRGPGIPAHLAEQVFRPF- 384
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ + +T GL +AR+L E+ G + + S W+ GGT V L + S
Sbjct: 385 ---YRLESSRNRITGGSGLGLAIARQLAETQGWKIAIKSRWR-------GGTSVWLQITS 434
Query: 610 P 610
P
Sbjct: 435 P 435
>gi|289674705|ref|ZP_06495595.1| sensor histidine kinase, partial [Pseudomonas syringae pv. syringae
FF5]
Length = 406
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + +L+ E L + LSNLI
Sbjct: 258 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVLLRGEPTLLNELLSNLI 315
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 316 DNALAHTAPGGNV-VLRVYAP---GVLEVEDDGPGI 347
>gi|315498594|ref|YP_004087398.1| integral membrane sensor signal transduction histidine kinase
[Asticcacaulis excentricus CB 48]
gi|315416606|gb|ADU13247.1| integral membrane sensor signal transduction histidine kinase
[Asticcacaulis excentricus CB 48]
Length = 453
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLI-EGALMRTQVGGKVEIVS 517
L E V A Q E LS+ + ++ AL +ALSNL+ G TQV EI
Sbjct: 312 LLETVVDGARRAGHQPEFVPLSEDVQTSIRVMALSRALSNLVMNGFHYATQVHVSAEIEH 371
Query: 518 AAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL 577
+ +DDDGP + + +L PF + N + + GL +AR+ +
Sbjct: 372 KPGGKQSLHIYVDDDGPGIPPEKREEALKPFSRLDDARNQNKKGVG----LGLAIARDTV 427
Query: 578 ESYG 581
S+G
Sbjct: 428 RSHG 431
>gi|116749437|ref|YP_846124.1| integral membrane sensor signal transduction histidine kinase
[Syntrophobacter fumaroxidans MPOB]
gi|116698501|gb|ABK17689.1| integral membrane sensor signal transduction histidine kinase
[Syntrophobacter fumaroxidans MPOB]
Length = 469
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP ++ + +++ ++ LA + + + SEL++ ++V + LR+ L NL++ A+ T
Sbjct: 315 RPVDLEQLAEEVYWRLKVLADSRSIRFD-SELAEPVVVPGDRERLRRLLFNLVDNAIKYT 373
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
+ GG V + S + G A+V + D GP + PF + E
Sbjct: 374 RPGGVVRL-SVRSADGTAVVDVSDSGPGIAAEDLEKIFLPFQRVPMTAPGTERGAGL--- 429
Query: 568 AGLTVARELLESYGCVVRVIS 588
GL++AR + ++G ++V S
Sbjct: 430 -GLSIARSIATAHGGRIQVRS 449
>gi|394989680|ref|ZP_10382513.1| hypothetical protein SCD_02106 [Sulfuricella denitrificans skB26]
gi|393791180|dbj|GAB72152.1| hypothetical protein SCD_02106 [Sulfuricella denitrificans skB26]
Length = 206
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELS----ELSQS----------LLVAVEEPALRQALS 497
++ ++G E + L ++R V+L+ EL+Q + V ALR+ LS
Sbjct: 48 MNQLIGGFLELAQGLGQEEKRPVDLAVLLGELAQDTGLEWRALPPCIREVASVALRRILS 107
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM 557
NL+E AL R G V +V A G A + I D GP + PF +
Sbjct: 108 NLVENAL-RYGGGKPVSMVCDCADGG-ARISILDRGPGIPPDQAEEVFRPF----YRLES 161
Query: 558 VEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD-AALGSGGTRVELWLPS 609
+ T GL +AR+L E+ G WK + A GGT L +P
Sbjct: 162 SRSSATGGSGLGLAIARQLAEANG--------WKIELLAREGGGTEARLTIPG 206
>gi|325110444|ref|YP_004271512.1| integral membrane sensor signal transduction histidine kinase
[Planctomyces brasiliensis DSM 5305]
gi|324970712|gb|ADY61490.1| integral membrane sensor signal transduction histidine kinase
[Planctomyces brasiliensis DSM 5305]
Length = 460
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L ++ ++PLA + LS + + +V + LRQ L NLIE A+ T + G V+
Sbjct: 317 LAEIVATMQPLATANNIHLSLSPTTSTAVVLSDRERLRQVLDNLIENAVKYTPIAGSVQ- 375
Query: 516 VSAAAPAGDALVVIDDDG 533
V+ + A A + I+D G
Sbjct: 376 VAVSMHADAATITIEDTG 393
>gi|299065377|emb|CBJ36546.1| Histidine kinase, sensor protein [Ralstonia solanacearum CMR15]
Length = 432
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+AL NLI A+ + + + + A G + ++DDGP + + PF +
Sbjct: 324 RALLNLIRNAMRYARQ--TISVRAEAGTYGSLCLTVEDDGPGIPAAERARVFEPF----Y 377
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS-PAP 612
+ D T F GL + R + +G VR+ + GSGG R L LP+ P P
Sbjct: 378 RLDASRDRHTGGFGLGLAIVRRIALVHGGEVRLDTG-------GSGGARFVLLLPAMPLP 430
Query: 613 L 613
+
Sbjct: 431 M 431
>gi|427402226|ref|ZP_18893298.1| hypothetical protein HMPREF9710_02894 [Massilia timonae CCUG 45783]
gi|425718999|gb|EKU81940.1| hypothetical protein HMPREF9710_02894 [Massilia timonae CCUG 45783]
Length = 562
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 7/139 (5%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+R DV+ D E VRPL + ++ + +V + L Q ++NL+ A
Sbjct: 266 LRELEFKDVIADAVEQVRPLIEKHRHRLTVDLPPARAIVVGDRKRLVQVMTNLLSNAAKY 325
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE-DNMTWN 565
T GG +E V G V I DDG M L +LF++ D
Sbjct: 326 TLEGGHIE-VRLTTDGGALAVDIRDDGIGMS-----PDLIASAFDLFAQGARGLDRSQGG 379
Query: 566 FVAGLTVARELLESYGCVV 584
GL + R LL+ +G V
Sbjct: 380 LGIGLALVRSLLKLHGGAV 398
>gi|398868398|ref|ZP_10623797.1| PAS domain S-box [Pseudomonas sp. GM78]
gi|398233368|gb|EJN19302.1| PAS domain S-box [Pseudomonas sp. GM78]
Length = 594
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 444 QNGIR-----PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQAL 496
QNG++ PC++ D+L +R Q++ VEL Q L + ++P L + L
Sbjct: 440 QNGLQKLTLAPCSIEDLLEQ--AQIRFTDGAQEKGVELLVEVQGPLPRLQADQPQLDRVL 497
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPF 548
NLI+ AL T GG + + A G+ +++ ++D+G + Y Q PF
Sbjct: 498 DNLIDNALRHTAAGGLIRL--QARRHGERVIISVEDNGEGIAYGQQGRIFEPF 548
>gi|389877915|ref|YP_006371480.1| sensor histidine kinase [Tistrella mobilis KA081020-065]
gi|388528699|gb|AFK53896.1| sensor histidine kinase [Tistrella mobilis KA081020-065]
Length = 500
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 39/297 (13%)
Query: 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL-HMKRSEISYD-IVEDIMVQGDR 356
+ L S W+N + + +IR + ++ S+M + + S+D +V D+ +
Sbjct: 214 LWLFTSVWRNIRGFAGVARRIRKDPGTQRSFSEMNRVPELNDVARSFDDMVRDLRGTAET 273
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
+R T +E A F T ++ + E LK+ S PE ++ S + ++
Sbjct: 274 MRRTAEENAHA-FKTPIAVISQSIEPLKR------SIPE-------DDLRGRRSLDLIER 319
Query: 417 SCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVE 475
S + L L A+ IE + L P P N+S +L D+ + + A +
Sbjct: 320 SVQRLDVLVNAARRIEETVADLLNPPRT-----PLNLSALLEDIVDEYQENARTTGDRRV 374
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+ + +++ V V + + NL++ AL T+ G +V +V+A G V++DD GP
Sbjct: 375 VGRIDRNISVRVGADMIETVMQNLLDNALSFTKPGTEV-MVTATVTDGRVRVLVDDQGP- 432
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDN-------MTWNFVAGLTVARELLESYGCVVR 585
+ P E E V NF GL + R +E+ G ++R
Sbjct: 433 --------GVPPGDLERIFERYVSIRDESQRMPGAGNFGIGLWIVRRNIEAAGGLIR 481
>gi|86749083|ref|YP_485579.1| sensor signal transduction histidine kinase [Rhodopseudomonas
palustris HaA2]
gi|86572111|gb|ABD06668.1| periplasmic sensor signal transduction histidine kinase
[Rhodopseudomonas palustris HaA2]
Length = 442
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
+R+A++NL++ A+ GK +V A G + ++DDGP + + + PF
Sbjct: 331 IRRAVTNLVDNAVRY----GKDILVRLEASPGRVTIEVEDDGPGIPEACKADVIEPFVRG 386
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYG 581
+ NM E T F GL++AR +++++G
Sbjct: 387 DDARNMDE---TSGFGLGLSIARTIVQNHG 413
>gi|399009588|ref|ZP_10712015.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
gi|398111398|gb|EJM01282.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
Length = 461
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
+ + G + ++S + +L A+ PLAH + + L E + + + E L + LSNL++
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHARGIALAL-EADEPVWLRGEPTLLNELLSNLVD 371
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
AL T+ GG V I+ +AP A++ ++DDGP +
Sbjct: 372 NALAHTKPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|163859304|ref|YP_001633602.1| sensor histidine kinase TctE [Bordetella petrii DSM 12804]
gi|163263032|emb|CAP45335.1| sensor histidine kinase TctE [Bordetella petrii]
Length = 525
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 440 APLKQNGIRP--CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQA 495
APL ++G+ P ++++V + A+ P A + RQ++L + SL V + + LR+A
Sbjct: 354 APLSEDGLAPERVDLAEVAQGVIRALLPAA--RARQIDLGLEASSLPVCIPGVDWLLREA 411
Query: 496 LSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE 555
LSNL++ A+ T +V V A A + ++D+GP M + F +
Sbjct: 412 LSNLVDNAIRYTAPASQV-TVRVYADERYARLTVEDNGPGMSAEDIARASVRFRRGAAGK 470
Query: 556 NMVEDNMTWNFVAGLTVARELLESYG 581
N + GL + R ++E +G
Sbjct: 471 NKPGAGL------GLAIVRTIVEIHG 490
>gi|222056250|ref|YP_002538612.1| heavy metal sensor signal transduction histidine kinase [Geobacter
daltonii FRC-32]
gi|221565539|gb|ACM21511.1| heavy metal sensor signal transduction histidine kinase [Geobacter
daltonii FRC-32]
Length = 486
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+G++ E +P+A + + + +S L+ + L A + R+A+SNLI +L T+ GG V I
Sbjct: 339 VGEIIEYYQPVA--EDKGINISCLNNATLYA-DRTLFRRAVSNLISNSLHYTEAGGSVSI 395
Query: 516 VSAAAPAGDALVVIDDDG 533
+ AP V + D G
Sbjct: 396 STRQAPNRSIEVTVRDTG 413
>gi|92113905|ref|YP_573833.1| sensor signal transduction histidine kinase [Chromohalobacter
salexigens DSM 3043]
gi|91796995|gb|ABE59134.1| periplasmic sensor signal transduction histidine kinase
[Chromohalobacter salexigens DSM 3043]
Length = 466
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V D++ DL+ PLAH + +++ L L Q L + +E + NL++ AL T GG
Sbjct: 327 VIDLMADLW----PLAHDRGQRLTLEGLHQ-LRIQADETEVGILFRNLLDNALRYTPEGG 381
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDM 536
VE+ G+A + + D GP +
Sbjct: 382 HVEVELGETTQGNAQIRVRDSGPGI 406
>gi|398852979|ref|ZP_10609617.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
gi|398242433|gb|EJN28048.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
Length = 461
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|399079030|ref|ZP_10753069.1| signal transduction histidine kinase [Caulobacter sp. AP07]
gi|398032739|gb|EJL26069.1| signal transduction histidine kinase [Caulobacter sp. AP07]
Length = 526
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 453 SDVLGDLFEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPALRQALSNLIEGALMRTQVG 510
+ V +L A R +A Q R + ++ +L+ L LVA E + L+ L+E + Q G
Sbjct: 386 AGVASELASAARRVADAQGRDIAVTLDLAADLPLVAAPEATVETVLTTLVENS---RQAG 442
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
+ + AAA GD ++ + DDGP + + PF F+ GL
Sbjct: 443 ARTVTIRAAAVGGDVVLRVSDDGPGVPPADRDRLFEPF----FTSRREAGGTGL----GL 494
Query: 571 TVARELLES 579
++AR LL +
Sbjct: 495 SIARSLLAA 503
>gi|146306763|ref|YP_001187228.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas mendocina ymp]
gi|145574964|gb|ABP84496.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas mendocina ymp]
Length = 445
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
L QAL N++ A+ + GG V + AGD L+ I+D GP + PF +
Sbjct: 340 GLAQALENILRNAIRHSPQGGSVRL-GGRREAGDWLLWIEDQGPGIAESELEAIFRPF-T 397
Query: 551 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
L + D F GL +AR ++E+ G V W + G G RV + LP+
Sbjct: 398 RLSAARPGGD----GFGLGLAIARSMVETQGGRV-----WAHN---GEPGLRVHIQLPA 444
>gi|386399068|ref|ZP_10083846.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM1253]
gi|385739694|gb|EIG59890.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM1253]
Length = 581
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + ++ +++ + +R+A+ NLI A+ +
Sbjct: 429 PVDVAALVKEVAEANQPLAVNKQQAISVTA-PVNIVTMCDTDRIREAIDNLISNAIKYSP 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GGK+ ++ + GD +V + D+G +
Sbjct: 488 IGGKIGVI-VSHEGGDTIVRVSDEGAGL 514
>gi|237786492|ref|YP_002907197.1| two-component system sensor kinase [Corynebacterium kroppenstedtii
DSM 44385]
gi|237759404|gb|ACR18654.1| two-component system, sensor kinase [Corynebacterium kroppenstedtii
DSM 44385]
Length = 375
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVVDDG 299
Query: 534 ----PD-MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
PD + Y+ + + + GLT+++ L+E++G + S
Sbjct: 300 DGIPPDQLRYIFE---------RFYRGDAARSRDDGGAGIGLTISKALIEAHGGTLTATS 350
Query: 589 P 589
P
Sbjct: 351 P 351
>gi|134294725|ref|YP_001118460.1| GntR family transcriptional regulator [Burkholderia vietnamiensis
G4]
gi|134137882|gb|ABO53625.1| transcriptional regulator, GntR family [Burkholderia vietnamiensis
G4]
Length = 258
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLL 484
I MP+ P A+A + +N P V+D + D EA V P+ + Q +LSE
Sbjct: 17 ITMPVRP-AIAQIMKNV--PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEE----- 68
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
+ + +LR+ALS L ++R + G V + SA A A A + P Y + ++
Sbjct: 69 LEISRASLREALSTLEALGMLRIRAGKGVYVESAQASAAHAWQFAEQSSPPDTYQMR-YA 127
Query: 545 LTPFGSELFSENMVEDNMTW 564
L F + + + + +D++ W
Sbjct: 128 LEGFAARMAAHVVTDDDIAW 147
>gi|222055650|ref|YP_002538012.1| histidine kinase [Geobacter daltonii FRC-32]
gi|221564939|gb|ACM20911.1| histidine kinase [Geobacter daltonii FRC-32]
Length = 376
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
C + + L + + A +Q + L S ++++ + LRQA N+I +L T
Sbjct: 225 CPIQEELETIVALLSNDARGRQISLVLKPASAPVIISADGEKLRQAFLNIIINSLQATPP 284
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
GG V I + AG + D GP + T PF F+ + G
Sbjct: 285 GGSVTITTTPYEAGSCEICFRDSGPGIDAETMDRIFEPF----FTTKPDGTGL------G 334
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
L + ++++ES+G ++V ++ +G GT V + LP
Sbjct: 335 LAITKKIIESHGGTMQV------ESEVGH-GTIVNVILP 366
>gi|453378873|dbj|GAC86233.1| putative two-component histidine kinase [Gordonia paraffinivorans
NBRC 108238]
Length = 384
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ + +S+ V V+ Q L NL++ AL T GG V I A A +V+ D G +
Sbjct: 256 TRIDRSVPVTVDPDRFGQVLGNLLDNALRHTPDGGTVTITCQQAGPTHAEIVVADTGEGI 315
Query: 537 HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
H F + ++ + GLT+ R L+E++G +R S
Sbjct: 316 AAEHLDHLFDRF----YRADLARNRRHGGSGIGLTITRALVEAHGGRIRAAS 363
>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 2028
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRT 507
P V +++ D E P H ++ ++L+ E+ L+++ ++ + QAL NL+ A+ T
Sbjct: 867 PQRVDELVRDARELFEP--HAAEKGLQLAFEVEPGLILSCDKERILQALGNLLSNAIKFT 924
Query: 508 QVGGKVEIVSAAAPAG--DALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
GG + ++ A A G D + + D GP + Q H + + +N E +
Sbjct: 925 PPGGSI-LLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYWHGV--QNKREGHGL-- 979
Query: 566 FVAGLTVARELLESYGCVVRV 586
GL++A+ ++ES+G +R+
Sbjct: 980 ---GLSIAKGIVESHGGRIRL 997
>gi|163749893|ref|ZP_02157138.1| sensor histidine kinase [Shewanella benthica KT99]
gi|161330407|gb|EDQ01386.1| sensor histidine kinase [Shewanella benthica KT99]
Length = 439
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++ ++ D+ DLFE +A + Q+++ LS + + V ++ L QAL NL++ A+
Sbjct: 299 LQDLSIKDMCEDLFEMAEAMAELNQQKLLLST-GEDIKVTGDKYLLFQALFNLVDNAIKY 357
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
G +EIV A + I D+GP +
Sbjct: 358 AGDGATIEIVQAGRE-----IQIRDNGPGI 382
>gi|374578495|ref|ZP_09651591.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM471]
gi|374426816|gb|EHR06349.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM471]
Length = 432
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEG 502
+RP + D+L + + + PLA +Q +VE +EL ++ +L+A + L + NLIE
Sbjct: 267 VRPDTLVDLLPIILQVADGLEPLARERQVEVE-TELPETPVLIAGDREELLRLFENLIEN 325
Query: 503 ALMRTQVGGK--VEIVSAAAPAG--DALVVIDDDGPDM 536
AL GG+ V ++S AAP G + V++ D GP +
Sbjct: 326 ALKYGASGGRIIVSLISGAAPDGTQEIRVLVRDFGPGI 363
>gi|148257442|ref|YP_001242027.1| two component sensor histidine kinase [Bradyrhizobium sp. BTAi1]
gi|146409615|gb|ABQ38121.1| putative two component sensor histidine kinase [Bradyrhizobium sp.
BTAi1]
Length = 458
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 24/128 (18%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID--DDGPDMHYMTQMHSLTPF 548
AL +A++N++E A V E+V + + A D ++ I+ DDGP + Q +L PF
Sbjct: 341 ALSRAVTNVVENA-----VKHGSEVVVSLSVATDGMIAIEVADDGPGIPQALQARALEPF 395
Query: 549 GSELFSENMVEDNMTWNFVAGLTVARELLESY--GCVVRVISPWKTDAALGSGGTRVELW 606
+ + F GL++A+E+++ + G + +P G RV L
Sbjct: 396 ------VKLDQARSAGGFGLGLSIAQEIMKKHDGGLALMPNAPR---------GLRVRLS 440
Query: 607 LPSPAPLS 614
LP PA LS
Sbjct: 441 LPLPAALS 448
>gi|399543245|ref|YP_006556553.1| Sensor histidine kinase resE [Marinobacter sp. BSs20148]
gi|399158577|gb|AFP29140.1| Sensor histidine kinase resE [Marinobacter sp. BSs20148]
Length = 494
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 22/135 (16%)
Query: 482 SLLVAVEEPALRQA--------LSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
SL + EPA+ A L NLI A+ + G KV VS AA A + + D G
Sbjct: 369 SLSIGAIEPAIVNADIAMTERVLDNLISNAISHSPAGTKVR-VSVAADANGVSIHVADSG 427
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 593
P ++ H TPF + N + + GL +AR + E + + V K
Sbjct: 428 PGINKQALAHIFTPFYQAPGA------NRSGHAGLGLAIARRMAELHQGRITV----KNR 477
Query: 594 AALGSGGTRVELWLP 608
+A GG WLP
Sbjct: 478 SA---GGAEFLFWLP 489
>gi|417304268|ref|ZP_12091297.1| integral membrane sensor signal transduction histidine kinase
[Rhodopirellula baltica WH47]
gi|421611151|ref|ZP_16052302.1| integral membrane sensor signal transduction histidine kinase
[Rhodopirellula baltica SH28]
gi|327539480|gb|EGF26095.1| integral membrane sensor signal transduction histidine kinase
[Rhodopirellula baltica WH47]
gi|408497965|gb|EKK02473.1| integral membrane sensor signal transduction histidine kinase
[Rhodopirellula baltica SH28]
Length = 255
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 32/185 (17%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L A L+ + P +++D + + +A + A Q VEL L + + AL+
Sbjct: 96 LRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQD--VELQRYLDPDLPSIRLHSDALQS 153
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-----DDGPDMHYMTQMHSLTPFG 549
AL NL++ AL GG++ + + G L +ID DD +H +S G
Sbjct: 154 ALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVLHMFEPFYSTKDGG 213
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
S L GL AR+++E++G + V S GT+ L P
Sbjct: 214 SGL----------------GLPTARKIIEAHGARISVQSETGR-------GTKFSLQFPV 250
Query: 610 PAPLS 614
PA L
Sbjct: 251 PARLG 255
>gi|445494512|ref|ZP_21461556.1| PAS/PAC sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444790673|gb|ELX12220.1| PAS/PAC sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 571
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+S+VL D + P A + ++ + LS+ V + ++Q + NL+ A+ + G
Sbjct: 264 GLSEVLRDCQALIGPQAEKRGIRLFFASLSEPFFVHADRTRVKQVMINLLSNAIKYNRHG 323
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
GKV + A G + + D G + PF + L E+ E+ GL
Sbjct: 324 GKVTVECTAGREGMVRISVTDTGAGLSSEQMEQLFQPF-NRLGQEDGAEEGTGI----GL 378
Query: 571 TVARELLESYGCVVRVIS 588
V ++L E G + V S
Sbjct: 379 VVTKQLTELMGGAIGVES 396
>gi|399057187|ref|ZP_10743814.1| signal transduction histidine kinase [Novosphingobium sp. AP12]
gi|398042221|gb|EJL35255.1| signal transduction histidine kinase [Novosphingobium sp. AP12]
Length = 532
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM----- 536
L+VA + P L + L NL++ A+ + GG VEI + V + D GP +
Sbjct: 410 GLMVAGDVPRLERVLQNLLDNAVSFSPSGGPVEI-TLGRSNNRVKVSVADHGPGIPAAAR 468
Query: 537 -HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLES-YGCVVRVISPWKTDA 594
+ HSL P E + + GL +AR ++E+ YG +V TD
Sbjct: 469 ERIFERFHSLRPSREEFGKHSGL----------GLAIARTIVEAHYGKLV------ATDR 512
Query: 595 ALGSGGTRVELWLPSPAP 612
G+ G R+ L LP+ P
Sbjct: 513 TDGTPGARLVLSLPAWQP 530
>gi|426408184|ref|YP_007028283.1| periplasmic sensor signal transduction histidine kinase
[Pseudomonas sp. UW4]
gi|426266401|gb|AFY18478.1| periplasmic sensor signal transduction histidine kinase
[Pseudomonas sp. UW4]
Length = 462
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|16127162|ref|NP_421726.1| sensor histidine kinase [Caulobacter crescentus CB15]
gi|221235963|ref|YP_002518400.1| two-component sensor histidine kinase [Caulobacter crescentus
NA1000]
gi|13424556|gb|AAK24894.1| sensor histidine kinase [Caulobacter crescentus CB15]
gi|220965136|gb|ACL96492.1| two-component sensor histidine kinase [Caulobacter crescentus
NA1000]
Length = 445
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
LA + G V D L DL E+V A +E +E++Q L + R+AL+N
Sbjct: 291 LAFARGEGGEAIQVVD-LSDLVESVVADAERGGAAIE-TEITQGLETRLRPLTFRRALAN 348
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMV 558
LI+ + +V + + G V +DDDGP + + PF S N
Sbjct: 349 LIDNGVAHAD---RVRVTVSPRQTGGVDVAVDDDGPGIPEDKYEEAFKPFSRLDESRNQN 405
Query: 559 EDNMTWNFVAGLTVARELLESYG 581
E + GL +AR++ G
Sbjct: 406 EKGVG----LGLAIARDMARGLG 424
>gi|378716496|ref|YP_005281385.1| putative two-component system sensor kinase [Gordonia
polyisoprenivorans VH2]
gi|375751199|gb|AFA72019.1| putative two-component system sensor kinase [Gordonia
polyisoprenivorans VH2]
Length = 466
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAP---AGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
Q L+NLI+ A T GG+VE+ A AP G V + D GP + +
Sbjct: 338 QILANLIDNACQATPAGGRVEVAVAHAPTESGGWVTVTVSDTGPGVPDADR--------- 388
Query: 551 ELFSENMV-----EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 605
E + MV D + GL VAR L ++G VR++ P D A R+EL
Sbjct: 389 ERIFDRMVRLDDSRDRRSGGAGLGLAVARGLARAHGGEVRLL-PRTPDGATQGAVFRLEL 447
>gi|328544620|ref|YP_004304729.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain-containing protein [Polymorphum gilvum
SL003B-26A1]
gi|326414362|gb|ADZ71425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Polymorphum gilvum SL003B-26A1]
Length = 469
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
LG L E++ R VE++ + +L A AL++AL NL+E A+ + G + I
Sbjct: 330 LGGLMESIAGDQSDLGRDVEVAARDRVVL-ACRPVALKRALRNLVENAV---RYGTRARI 385
Query: 516 VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 575
+ A G A++ +DDDGP + PF S + T GL +AR
Sbjct: 386 -AVRAEGGQAVLTVDDDGPGIADDRLADVFEPFVRLEESRS----GETGGIGLGLAIARS 440
Query: 576 LLESYGCVV 584
++ ++G +
Sbjct: 441 IVHAHGGTI 449
>gi|17232455|ref|NP_489003.1| adenylate cyclase [Nostoc sp. PCC 7120]
gi|17134101|dbj|BAB76662.1| adenylate cyclase carring two-component hybrid sensor and regulator
domains [Nostoc sp. PCC 7120]
Length = 1155
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEG 502
Q RPC++ D + + E+ RP + +++ + L +EL + V ++ + + NL+
Sbjct: 581 QPSFRPCDLVDFVSQIVESFRP--YCEKKALHLTTELDECPTVYIDMEKFDKVVYNLLSN 638
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
A+ T GG + V + ++ + D G + + P E F + +N
Sbjct: 639 AMKFTPEGGTIS-VKLQSQGHHCILQVQDTGIGI-----VKEQIPHLFERFRQAEGSENR 692
Query: 563 TWNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
++ GL + +EL+E +G V V S + GT LWL
Sbjct: 693 SYEGSGLGLALVKELVELHGGRVTVESVY-------GKGTTFTLWL 731
>gi|406974114|gb|EKD97309.1| hypothetical protein ACD_23C00974G0002 [uncultured bacterium]
Length = 467
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++++ +GDL E LA +++ + LS LS + + LR+A+SNL+ AL T
Sbjct: 319 PIDLAEEIGDLLEYYDVLA--EEKAIALS-LSGGGQIVGDRLMLRRAVSNLLSNALRHTP 375
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GKV + G LV +++ G D+
Sbjct: 376 NEGKVTVRVEKNSEGGILVSVENTGSDI 403
>gi|398958787|ref|ZP_10677752.1| signal transduction histidine kinase [Pseudomonas sp. GM33]
gi|398146006|gb|EJM34775.1| signal transduction histidine kinase [Pseudomonas sp. GM33]
Length = 462
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|338535496|ref|YP_004668830.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
gi|337261592|gb|AEI67752.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
Length = 368
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
VA EE LRQ L NL AL T GG+V + +A G + +DD GP + +
Sbjct: 260 VAGEEERLRQVLINLCLNALEATPAGGRVSL-AAGHEGGRVWLTVDDSGPGVPQEVRDRI 318
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVE 604
PF F+ + GL++ ++ +G + V D A G GG R
Sbjct: 319 FEPF----FTTKAQGSGL------GLSIVHAIVTQHGGTLEV------DTAPG-GGARFI 361
Query: 605 LWLP 608
L LP
Sbjct: 362 LRLP 365
>gi|427402472|ref|ZP_18893469.1| hypothetical protein HMPREF9710_03065 [Massilia timonae CCUG 45783]
gi|425718278|gb|EKU81225.1| hypothetical protein HMPREF9710_03065 [Massilia timonae CCUG 45783]
Length = 717
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R +V DV+ D E RPL +Q + + V + L Q L+NL+ A T
Sbjct: 414 REIDVHDVIADAEEQARPLMEKRQHALRCICRAGKAYVRGDRKRLVQVLANLLNNAAKYT 473
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GG +++ D + + D+G M H L +LF++ + + T +
Sbjct: 474 PPGGAIDM-RVEVRERDVAISVSDNGIGM-----AHELVGRVFDLFAQGERDADRTQGGL 527
Query: 568 A-GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPAP 612
GL + R L+E +G V S G+G G+R + LP P
Sbjct: 528 GIGLALVRNLVELHGGSVGAHSA-------GAGQGSRFTVTLPRIEP 567
>gi|253579801|ref|ZP_04857069.1| sensor protein ResE [Ruminococcus sp. 5_1_39B_FAA]
gi|251848800|gb|EES76762.1| sensor protein ResE [Ruminococcus sp. 5_1_39BFAA]
Length = 345
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
NV+D++ D+ A +++++ LS S L + + L +A+ N+++ A T+ G
Sbjct: 198 NVADMMRDIELHFAYRARQEKKEIILSG-SDHLSLFCDRDWLNEAIDNIVKNAFDHTESG 256
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
+ + P+G + VI D+G +H H F FS++ + GL
Sbjct: 257 ATIHVAWKELPSGVQI-VITDNGCGIHPEDIHHIFKRFYRSRFSKDKQGIGL------GL 309
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGT 601
+A+ ++E++ + V D+ LG G T
Sbjct: 310 PLAKAIVEAHNGTIEV------DSELGIGTT 334
>gi|75908456|ref|YP_322752.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
gi|75702181|gb|ABA21857.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
Length = 1156
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEG 502
Q RPC++ D + + E+ RP + +++ + L +EL + V ++ + + NL+
Sbjct: 581 QPSFRPCDLVDFVSQIVESFRP--YCEKKALHLTTELDECPTVYIDMEKFDKVVYNLLSN 638
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
A+ T GG + V + ++ + D G + + P E F + +N
Sbjct: 639 AMKFTPEGGTIS-VKLQSQGHHCILQVQDTGIGI-----VKEQIPHLFERFRQAEGSENR 692
Query: 563 TWNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
++ GL + +EL+E +G V V S + GT LWL
Sbjct: 693 SYEGSGLGLALVKELVELHGGRVTVESVY-------GKGTTFTLWL 731
>gi|410640667|ref|ZP_11351197.1| sensor histidine kinase [Glaciecola chathamensis S18K6]
gi|410139695|dbj|GAC09384.1| sensor histidine kinase [Glaciecola chathamensis S18K6]
Length = 449
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF-- 548
AL QAL N+I A + G V+I + + P L+ + D GP ++ L PF
Sbjct: 342 ALLQALDNIIGNACKYSASGELVQITTLSRPTS-VLITVRDHGPGVNEEEMSKLLQPFYR 400
Query: 549 -GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
G+E+ + F GL++A + + + +R+ +P GG +VE+ L
Sbjct: 401 AGNEMHTN---------GFGLGLSIALKAINKHKGELRMSTP-------DDGGLKVEIIL 444
Query: 608 PSPA 611
P A
Sbjct: 445 PKVA 448
>gi|359769226|ref|ZP_09272989.1| putative two-component histidine kinase [Gordonia
polyisoprenivorans NBRC 16320]
gi|359313529|dbj|GAB25822.1| putative two-component histidine kinase [Gordonia
polyisoprenivorans NBRC 16320]
Length = 466
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAP---AGDALVVIDDDGPDMHYMTQMHSLTPFGS 550
Q L+NLI+ A T GG+VE+ A AP G V + D GP + +
Sbjct: 338 QILANLIDNACQATPAGGRVEVAVAHAPTESGGWVTVTVSDTGPGVPDADR--------- 388
Query: 551 ELFSENMV-----EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 605
E + MV D + GL VAR L ++G VR++ P D A R+EL
Sbjct: 389 ERIFDRMVRLDDSRDRRSGGAGLGLAVARGLARAHGGEVRLL-PRTPDGATQGAVFRLEL 447
>gi|188581323|ref|YP_001924768.1| response regulator receiver sensor signal transduction histidine
kinase [Methylobacterium populi BJ001]
gi|179344821|gb|ACB80233.1| response regulator receiver sensor signal transduction histidine
kinase [Methylobacterium populi BJ001]
Length = 613
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ + ++ EA RPLA + +++ +++L+ L + + LR+AL NL+ A+ +
Sbjct: 459 PVDLAGLAREVCEANRPLAESKGQRL-ITDLAGPLQLCGDAERLREALDNLVSNAIKYSY 517
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG + V A AGD + + D GP +
Sbjct: 518 PGGTI-TVRVRAEAGDYVCAVADQGPGL 544
>gi|398912902|ref|ZP_10656201.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
gi|398181613|gb|EJM69168.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
Length = 462
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|339489118|ref|YP_004703646.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S16]
gi|338839961|gb|AEJ14766.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S16]
Length = 459
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVLAP---AVLEVEDDGPGI 402
>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
DW4/3-1]
gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
DW4/3-1]
Length = 1991
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRT 507
P V +++ D E P H ++ ++L+ E+ L+++ ++ + QAL NL+ A+ T
Sbjct: 830 PQRVDELVRDARELFEP--HAAEKGLQLAFEVEPGLILSCDKERILQALGNLLSNAIKFT 887
Query: 508 QVGGKVEIVSAAAPAG--DALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
GG + ++ A A G D + + D GP + Q H + + +N E +
Sbjct: 888 PPGGSI-LLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYWHGV--QNKREGHGL-- 942
Query: 566 FVAGLTVARELLESYGCVVRV 586
GL++A+ ++ES+G +R+
Sbjct: 943 ---GLSIAKGIVESHGGRIRL 960
>gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
Length = 571
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L L+ L+Q + + N+++ + F+ V+ A ++ ++ L E +L + V+ L
Sbjct: 405 LELSKLEQKQVPMNMQEVNLTEAVLSTFQLVKQTADEKEMKLNLIE-EDTLFITVDSSRL 463
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+Q L+NLI A++ TQ G+V V+ A++++ D+G
Sbjct: 464 KQILANLINNAVVYTQDSGEV-TVTIRKENNQAVILVSDNG 503
>gi|395651413|ref|ZP_10439263.1| putative two-component system sensor kinase [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 595
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 444 QNGIR-----PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQAL 496
QNG++ PC+V D+L R L + +EL +QS L + ++P L + L
Sbjct: 441 QNGLQKLTLGPCDVIDLLE--HARARFLEQANTQHIELLVEAQSDLPRLYADQPQLERVL 498
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPF 548
NL+ AL T GG++ + A G+ +++ ++D+G + Y Q PF
Sbjct: 499 DNLLGNALRHTAEGGQIRL--QARRHGERVIISVEDNGEGIAYGQQGRIFEPF 549
>gi|333892582|ref|YP_004466457.1| sensor signal transduction histidine kinase [Alteromonas sp. SN2]
gi|332992600|gb|AEF02655.1| periplasmic sensor signal transduction histidine kinase
[Alteromonas sp. SN2]
Length = 447
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF-- 548
AL QAL N+I A + G VE VS + A++ + D GP + L PF
Sbjct: 341 ALHQALENIIGNACKYSSRGELVE-VSTEKRSNTAVITVRDHGPGVDSEEIEKLLQPFYR 399
Query: 549 -GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
G+++ + F GL++A++ +E + +++ P GG RVE+ L
Sbjct: 400 AGNQMHTS---------GFGLGLSIAKKAIEKHSGRLQMTRP-------ADGGLRVEIAL 443
Query: 608 P 608
P
Sbjct: 444 P 444
>gi|332306809|ref|YP_004434660.1| integral membrane sensor signal transduction histidine kinase
[Glaciecola sp. 4H-3-7+YE-5]
gi|332174138|gb|AEE23392.1| integral membrane sensor signal transduction histidine kinase
[Glaciecola sp. 4H-3-7+YE-5]
Length = 449
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF-- 548
AL QAL N+I A + G V+I + + P L+ + D GP ++ L PF
Sbjct: 342 ALLQALDNIIGNACKYSASGELVQITTLSRPTS-VLIAVRDHGPGVNEEEMSKLLQPFYR 400
Query: 549 -GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607
G+E+ + F GL++A + + + +R+ +P GG +VE+ L
Sbjct: 401 AGNEMHTN---------GFGLGLSIALKAINKHKGELRMSTP-------DDGGLKVEIIL 444
Query: 608 PSPA 611
P A
Sbjct: 445 PKVA 448
>gi|186472891|ref|YP_001860233.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia phymatum STM815]
gi|184195223|gb|ACC73187.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia phymatum STM815]
Length = 443
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 470 QQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
Q +QV+L E + V + PAL L NL++ A+ T GG+V+ VS GD L+
Sbjct: 317 QSKQVDLGLEKVDDIEVIADVPALAVVLRNLVDNAVRYTPEGGRVD-VSVTRHGGDLLIE 375
Query: 529 IDDDGPDMHYMTQMHSLTPF 548
+ D GP + + L PF
Sbjct: 376 VTDTGPGIPDDQLLRVLEPF 395
>gi|398892608|ref|ZP_10645620.1| signal transduction histidine kinase [Pseudomonas sp. GM55]
gi|398185181|gb|EJM72597.1| signal transduction histidine kinase [Pseudomonas sp. GM55]
Length = 462
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|407709047|ref|YP_006792911.1| two-component system, OmpR family, sensor histidine kinase TctE
[Burkholderia phenoliruptrix BR3459a]
gi|407237730|gb|AFT87928.1| two-component system, OmpR family, sensor histidine kinase TctE
[Burkholderia phenoliruptrix BR3459a]
Length = 471
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+S VL DL +A Q+R +++ +EL +A L +SNL++ A+ TQ G
Sbjct: 331 LSCVLEDLVDAA------QRRGIDIGAELDGEAYIAGSSMLLTALVSNLVDNAIRYTQNG 384
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
G+V + G+ +V + D+GP + + H E F + T GL
Sbjct: 385 GRV-TATCRTEGGEVVVQVIDNGPGIPAEARAHVF-----ERFYRGTTDAEGTG---LGL 435
Query: 571 TVARELLESYGCVV 584
++ RE+ S+G V
Sbjct: 436 SIVREVAHSHGGTV 449
>gi|398386291|ref|ZP_10544294.1| signal transduction histidine kinase [Sphingobium sp. AP49]
gi|397718659|gb|EJK79245.1| signal transduction histidine kinase [Sphingobium sp. AP49]
Length = 531
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM------HYMTQ 541
EE L + L NLI+ A+ + G V+I++ A + LV ++D+GP + H +
Sbjct: 409 EEQRLMRVLENLIDNAISFSPDDGLVQIIATVAD-NEVLVSVEDEGPGVPVSEREHVFRR 467
Query: 542 MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV 586
HS+ P G + + GL +AR ++E + +R+
Sbjct: 468 FHSVRPEGEAFGKHSGL----------GLAIARSIVEGHQGKIRI 502
>gi|397693048|ref|YP_006530928.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
gi|421522762|ref|ZP_15969402.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
gi|397329778|gb|AFO46137.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
gi|402753255|gb|EJX13749.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
Length = 459
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVSLALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|227502287|ref|ZP_03932336.1| two-component system sensor kinase [Corynebacterium accolens ATCC
49725]
gi|227076977|gb|EEI14940.1| two-component system sensor kinase [Corynebacterium accolens ATCC
49725]
Length = 375
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQIETITHTARALVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 ----PD-MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
PD + Y+ + + + GLT+++ L+E++G + S
Sbjct: 300 EGIPPDQLRYIFE---------RFYRGDAARSRDDGGAGIGLTISKALIEAHGGTLTATS 350
Query: 589 P 589
P
Sbjct: 351 P 351
>gi|83649318|ref|YP_437753.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83637361|gb|ABC33328.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 599
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I PC+V ++ + +R +A M V E+ L+ V+ + Q L+N + A+
Sbjct: 295 IEPCSVQSLVNESVSMIRSMAMMNNISVYEPEVRLDYLIKVDRTRMVQVLTNFLTNAIKY 354
Query: 507 TQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
+ GG V++ + + +G + + D+G +H PF E + +D
Sbjct: 355 NRKGGWVKVELEHESRSGMLCLSVADNGIGIHKKDHHKVFKPF------ERLAQDMAIEG 408
Query: 566 FVAGLTVARELL 577
GL ++++L+
Sbjct: 409 TGIGLALSQQLV 420
>gi|254521607|ref|ZP_05133662.1| sensor protein TorS [Stenotrophomonas sp. SKA14]
gi|219719198|gb|EED37723.1| sensor protein TorS [Stenotrophomonas sp. SKA14]
Length = 773
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 442 LKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQAL 496
L G RP CNV+ + +A+RP A ++ Q+ + +VA++ ALRQ +
Sbjct: 372 LAGGGFRPRADACNVASLCRQSLDAIRPQARLKGLQLRFDCNPDPVPVVALDSEALRQIV 431
Query: 497 SNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDD-GPDMHYMTQMHSLTPFGSEL 552
NL+ A+ T VGG +V++ P L VID G D ++ H F
Sbjct: 432 DNLLGNAVKFTDVGGIDLRVQLAPPIEPRTLVLDVIDSGIGIDARHIG--HLFRAF---- 485
Query: 553 FSENMVEDNMTWNFVAGLTVAREL 576
+ M GL++AREL
Sbjct: 486 --QQGEGGQMRGGSGLGLSIAREL 507
>gi|71274771|ref|ZP_00651059.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Xylella
fastidiosa Dixon]
gi|71164503|gb|EAO14217.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Xylella
fastidiosa Dixon]
gi|71728816|gb|EAO30956.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Xylella
fastidiosa Ann-1]
Length = 498
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 20/163 (12%)
Query: 455 VLGDLFEAVRPLAHMQQ---RQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+L DLF+ V+ L + + E + L V L+Q L NL A+ GG
Sbjct: 221 LLADLFQTVQLLLRSSVPDCIALRIEECDEYLSVEANYTELQQCLLNLALNAIHAMPTGG 280
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+ +V+ + + D G M T+ +PF F+ + GL
Sbjct: 281 CLTLVAQRHDGDRICISVTDTGIGMSEETRARLFSPF----FTTKSDGTGL------GLI 330
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 614
+ + ESYG +++V S GTR +L LP+ AP S
Sbjct: 331 SCKRIAESYGGLIQVCSELGV-------GTRFDLILPARAPAS 366
>gi|384220773|ref|YP_005611939.1| hypothetical protein BJ6T_71020 [Bradyrhizobium japonicum USDA 6]
gi|354959672|dbj|BAL12351.1| hypothetical protein BJ6T_71020 [Bradyrhizobium japonicum USDA 6]
Length = 833
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 31/154 (20%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI--------------VSA 518
Q E++E ++ V E L+Q + NL A G +E+ +
Sbjct: 546 QFEVNESAEEATVMGEPAQLQQVILNLCNNAAQAMTEPGCIELGIEVHDLQQPLSIGRNE 605
Query: 519 AAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 578
P ++ + D GP M T PF + N + GL RE++E
Sbjct: 606 VGPGRFTVISVTDPGPGMDEATLERIFEPFFTTRPDGNGI----------GLATVREIVE 655
Query: 579 SYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
YG V V S + DA GTR ++WLPS P
Sbjct: 656 QYGGAVAVQS--EPDA-----GTRFDVWLPSGGP 682
>gi|26988154|ref|NP_743579.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida KT2440]
gi|24982887|gb|AAN67043.1|AE016333_4 sensor histidine kinase TctE, putative [Pseudomonas putida KT2440]
Length = 463
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 317 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 374
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 375 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 406
>gi|422303434|ref|ZP_16390785.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9806]
gi|389791582|emb|CCI12604.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9806]
Length = 418
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + ++ + DR+R + E + +
Sbjct: 193 ANDPAITGMLRESDRVRDLIAEFEGQI 219
>gi|386084768|ref|YP_006001050.1| histidine kinase/response regulator hybrid protein [Xylella
fastidiosa subsp. fastidiosa GB514]
gi|417558304|ref|ZP_12209286.1| Signal transduction histidine kinase [Xylella fastidiosa EB92.1]
gi|307579715|gb|ADN63684.1| histidine kinase/response regulator hybrid protein [Xylella
fastidiosa subsp. fastidiosa GB514]
gi|338179108|gb|EGO82072.1| Signal transduction histidine kinase [Xylella fastidiosa EB92.1]
Length = 498
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 20/163 (12%)
Query: 455 VLGDLFEAVRPLAHMQQRQ---VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+L DLF+ V+ L + + E + L V L+Q L NL A+ GG
Sbjct: 221 LLADLFQTVQLLLRSSVPDCIALRIEECDEYLSVEANYTELQQCLLNLALNAIHAMPTGG 280
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+ +V+ + + D G M T+ +PF F+ + GL
Sbjct: 281 CLTLVAQRHDGDRICISVTDTGIGMSEETRARLFSPF----FTTKSDGTGL------GLI 330
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 614
+ + ESYG +++V S GTR +L LP+ AP S
Sbjct: 331 SCKRIAESYGGLIQVCSELGV-------GTRFDLILPARAPAS 366
>gi|350545657|ref|ZP_08915124.1| Signal transduction histidine kinase [Candidatus Burkholderia
kirkii UZHbot1]
gi|350526566|emb|CCD40136.1| Signal transduction histidine kinase [Candidatus Burkholderia
kirkii UZHbot1]
Length = 457
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 470 QQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
Q+R+++L +EL+ S + E L + N+ E A+ TQ GG V V+ A AG +
Sbjct: 330 QKREIDLGAELADSAWIIGHEALLSALVYNMAENAIRYTQQGGHV-TVAVARDAGRVTLT 388
Query: 529 IDDDGPDMHYMTQMHSLTPF 548
+ DDGP + + PF
Sbjct: 389 VTDDGPGIPAEARSRVFEPF 408
>gi|317051728|ref|YP_004112844.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
indicum S5]
gi|316946812|gb|ADU66288.1| ATP-binding region ATPase domain protein [Desulfurispirillum
indicum S5]
Length = 619
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
NV +LGD E P+A QQ+ ++L E+ + L V ++E Q L NLI A+ T
Sbjct: 474 NVVPLLGDCLEDFHPMA--QQKHIQLHLEVPKKLYVCIDELRFLQVLQNLISNAIKFTDS 531
Query: 510 GGKVEIVSAAAPAGDALVVIDDDG 533
G V A+ G +V + D G
Sbjct: 532 GSVN--VRASDETGRVVVEVADTG 553
>gi|255654717|ref|ZP_05400126.1| two-component sensor histidine kinase [Clostridium difficile
QCD-23m63]
gi|296449460|ref|ZP_06891240.1| two component sensor histidine kinase [Clostridium difficile NAP08]
gi|296878217|ref|ZP_06902229.1| two component sensor histidine kinase [Clostridium difficile NAP07]
gi|296261699|gb|EFH08514.1| two component sensor histidine kinase [Clostridium difficile NAP08]
gi|296430786|gb|EFH16621.1| two component sensor histidine kinase [Clostridium difficile NAP07]
Length = 468
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+EL L++ ++V ++ L++A+SNLI+ ++ Q G ++++S + ++++DDG
Sbjct: 344 IELDILNEDIIVDADKKLLKRAISNLIQNSITHNQQGCNIKVIS-KSDLDFCYIIVEDDG 402
Query: 534 PDM 536
M
Sbjct: 403 KGM 405
>gi|88798652|ref|ZP_01114236.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Reinekea
blandensis MED297]
gi|88778752|gb|EAR09943.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Reinekea
sp. MED297]
Length = 452
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 20/164 (12%)
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
G N+ D++ DL E P+ + RQV L+ V + L QA +N+++ A
Sbjct: 307 GFESLNLDDLMADLIEMYVPV--FEDRQVRLTLNGHCGTVHGDRHLLFQAFANVLDNAAK 364
Query: 506 RTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564
T GG+V + VS D +VI D GP + + F E + + T
Sbjct: 365 FTPPGGEVRLEVSRNDDVID--LVIQDSGPGIAEASLERVFERFHREDSARS------TQ 416
Query: 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
F GL++ R ++E + VR+ + G RV + LP
Sbjct: 417 GFGLGLSLVRAIIERHDGQVRLSNHH---------GLRVAIRLP 451
>gi|298246997|ref|ZP_06970802.1| integral membrane sensor signal transduction histidine kinase
[Ktedonobacter racemifer DSM 44963]
gi|297549656|gb|EFH83522.1| integral membrane sensor signal transduction histidine kinase
[Ktedonobacter racemifer DSM 44963]
Length = 390
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 447 IRP--CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+RP C+ + ++ E + L+ RQ+E Q L++ + L QA+ NL+E A+
Sbjct: 232 LRPTSCDFEKLCREVVEDQQALS---GRQIEYQFSEQPLILQADCERLSQAIINLVENAV 288
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564
+ + V V +A L + ++GP++ + Q PF F+EN
Sbjct: 289 HYS-LEHTVIRVRVSADQTSVLFQVHNEGPELSHEQQERIFEPFYRTSFAENAFRTGRG- 346
Query: 565 NFVAGLTVARELLESY 580
GLT+++E++E +
Sbjct: 347 ---IGLTMSQEIVEKH 359
>gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus sp. FS406-22]
gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus sp. FS406-22]
Length = 631
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 37/165 (22%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALM 505
I+ V D++ ++ +++PL +++ +E+ ++ +L V++ + Q L NLIE A+
Sbjct: 482 IKDIKVKDMINEVLNSLQPLT--KEKNIEVKCDIEDNLTAKVDKDRIIQVLINLIENAIK 539
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGP-----------DMHYMTQMHSLTPFGSELFS 554
+ V G +EI A A ++I D GP D Y + G+ L
Sbjct: 540 FSPVKGVIEI-HAFRDKNYAHIIIKDYGPGIPKKDLERIFDKFYQVNFPKIKRDGAGL-- 596
Query: 555 ENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG 599
GL + + ++E++G + W ++ LG G
Sbjct: 597 --------------GLAICKSIIEAHGGKI-----W-VESELGKG 621
>gi|406836491|ref|ZP_11096085.1| integral membrane sensor signal transduction histidine kinase
[Schlesneria paludicola DSM 18645]
Length = 562
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
LKQ+ + ++ ++ D E VRPLA +QR ++L + +V + L Q L+NL+
Sbjct: 384 LKQDSV---DLEPLIQDCVELVRPLA--EQRGIQLESETSPCIVVGDGDKLAQVLTNLLS 438
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
A+ G+V V+ A++ + D G + L + N
Sbjct: 439 NAIRYNVENGRVR-VTTGTDGQLAILEVTDTGIGI----PGDQLELIFDRFYQVNKARSR 493
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL 616
+ GL++ + ++E++G +RV S GT VE+ LP P++ +
Sbjct: 494 AEGSCGLGLSICKTIVEAHGGTIRVSSELNV-------GTTVEVRLPLVRPVTKV 541
>gi|398993993|ref|ZP_10696924.1| signal transduction histidine kinase [Pseudomonas sp. GM21]
gi|398133498|gb|EJM22698.1| signal transduction histidine kinase [Pseudomonas sp. GM21]
Length = 461
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ RS L + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRSTLETAAQGTDRLTHLANQLLSLARVENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++S + +L A+ PLAH R V L+ E + + + E L + LSNL++ AL T
Sbjct: 322 DLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLVDNALAHTPS 379
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG V I+ AP A++ ++DDGP +
Sbjct: 380 GGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|171316879|ref|ZP_02906088.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia ambifaria MEX-5]
gi|171097960|gb|EDT42778.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia ambifaria MEX-5]
Length = 455
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 470 QQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
Q+R ++L ++L + L VA + L + NL++ A+ TQ GG+V +V A GDA+V+
Sbjct: 328 QRRDIDLGADLGERLDVAGSDSLLTALVMNLVDNAVRYTQPGGRVTVV--ARRDGDAVVL 385
Query: 529 -IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 587
+ D+GP + + H F + D GL + RE+ +++G V ++
Sbjct: 386 DVVDNGPGIPAEARPHVFKRF------YRVAADTEGSGL--GLAIVREIAQAHGGSV-ML 436
Query: 588 SPWKTDAALGSGGTRVELWLPS 609
+P G+ G V + LP+
Sbjct: 437 APGP-----GNRGIVVTVRLPA 453
>gi|395799253|ref|ZP_10478534.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas sp. Ag1]
gi|395336357|gb|EJF68217.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas sp. Ag1]
Length = 1382
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA-LRQALSNLIEGALMR 506
+P ++ L D++ V H Q +++S Q+ L+ +P L Q + NL+ AL
Sbjct: 1086 QPVDLVKTLQDIYNVVLIDDHRCQVTLDISLAPQTTLLVDADPTRLEQVIWNLVNNALKF 1145
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
T G+V+++ + L VI D G + +Q F +EN + +
Sbjct: 1146 TPDNGRVQLILSRVDGHARLDVI-DSGIGLAEQSQDKIFDLFSQ---AENQHQTHQREGL 1201
Query: 567 VAGLTVARELLESYGCVVRVIS 588
GL++ R+L+E++G V V S
Sbjct: 1202 GIGLSLVRQLVEAHGGHVSVHS 1223
>gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase
[Thermosediminibacter oceani DSM 16646]
gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase
[Thermosediminibacter oceani DSM 16646]
Length = 586
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
+ + V P+A ++ + +EL + L+ +E + Q L NLI+ AL T+ GG++ I+ A
Sbjct: 438 VIKKVNPVAEKKRVNIT-AELKELPLIYADEDRMEQVLINLIDNALRYTENGGEI-IIEA 495
Query: 519 AAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF---SENMVEDNMTWNFVAGLTVARE 575
+A V + D GP + PF E F + DN GL + +
Sbjct: 496 SAGTESVTVCVKDRGPGIP-----EDELPFIWERFYKVDKARTRDNGGTGI--GLAIVKN 548
Query: 576 LLESYGCVV 584
++E++G V
Sbjct: 549 IIEAHGGKV 557
>gi|377808398|ref|YP_004979590.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. YI23]
gi|357939595|gb|AET93152.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. YI23]
Length = 1388
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I P +V+ VL + + A ++ ++ S L + + + Q L NL+ AL
Sbjct: 1091 IVPVDVAAVLARIVDVSETEAAQREIRLRASNLGEPIYAFADAVRCEQILWNLVSNALKF 1150
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
T GG V++ A G + I D G + S P +++ ++ + +
Sbjct: 1151 TDRGGSVDL-KIARDGGMVRIDIADTGQGIEA-----SALPHIFDMYRQS-ARNRTSGGL 1203
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611
GL +A++L+E +G + S LG G T + +WLP+ A
Sbjct: 1204 GIGLALAKQLVEMHGGRIEARSE-----GLGRGAT-LSVWLPAAA 1242
>gi|182681264|ref|YP_001829424.1| response regulator receiver sensor hybrid histidine kinase [Xylella
fastidiosa M23]
gi|182631374|gb|ACB92150.1| response regulator receiver sensor hybrid histidine kinase [Xylella
fastidiosa M23]
Length = 489
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 20/163 (12%)
Query: 455 VLGDLFEAVRPLAHMQQ---RQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+L DLF+ V+ L + + E + L V L+Q L NL A+ GG
Sbjct: 212 LLADLFQTVQLLLRSSVPDCIALRIEECDEYLSVEANYTELQQCLLNLALNAIHAMPTGG 271
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+ +V+ + + D G M T+ +PF F+ + GL
Sbjct: 272 CLTLVAQRHDGDRICISVTDTGIGMSEETRARLFSPF----FTTKSDGTGL------GLI 321
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 614
+ + ESYG +++V S GTR +L LP+ AP S
Sbjct: 322 SCKRIAESYGGLIQVCSELGV-------GTRFDLILPARAPAS 357
>gi|28198583|ref|NP_778897.1| histidine kinase/response regulator hybrid protein [Xylella
fastidiosa Temecula1]
gi|28056667|gb|AAO28546.1| histidine kinase/response regulator hybrid protein [Xylella
fastidiosa Temecula1]
Length = 498
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 20/163 (12%)
Query: 455 VLGDLFEAVRPLAHMQQRQ---VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+L DLF+ V+ L + + E + L V L+Q L NL A+ GG
Sbjct: 221 LLADLFQTVQLLLRSSVPDCIALRIEECDEYLSVEANYTELQQCLLNLALNAIHAMPTGG 280
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+ +V+ + + D G M T+ +PF F+ + GL
Sbjct: 281 CLTLVAQRHDGDRICISVTDTGIGMSEETRARLFSPF----FTTKSDGTGL------GLI 330
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 614
+ + ESYG +++V S GTR +L LP+ AP S
Sbjct: 331 SCKRIAESYGGLIQVCSELGV-------GTRFDLILPARAPAS 366
>gi|404403326|ref|ZP_10994910.1| putative two-component system sensor kinase [Pseudomonas
fuscovaginae UPB0736]
Length = 461
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + E L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAHA--RGVALALEADDPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|410087605|ref|ZP_11284308.1| Copper sensory histidine kinase CpxA [Morganella morganii SC01]
gi|421493057|ref|ZP_15940415.1| CPXA [Morganella morganii subsp. morganii KT]
gi|455737720|ref|YP_007503986.1| Copper sensory histidine kinase CpxA [Morganella morganii subsp.
morganii KT]
gi|400192685|gb|EJO25823.1| CPXA [Morganella morganii subsp. morganii KT]
gi|409766049|gb|EKN50147.1| Copper sensory histidine kinase CpxA [Morganella morganii SC01]
gi|455419283|gb|AGG29613.1| Copper sensory histidine kinase CpxA [Morganella morganii subsp.
morganii KT]
Length = 456
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 18/167 (10%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
L+QN +++ D+ + + A + + +E++ + AL A N++
Sbjct: 304 LRQN----IKANELWDDILDNAKFEAEQRHKTLEITSPPGPWTIYCNPSALGSAFENIVR 359
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
AL + +++ +A G ++VV DDDGP + + H PF + + D
Sbjct: 360 NALRYS--NQHIQVAFSADTKGISIVV-DDDGPGVSPEDREHIFRPF----YRTDEARDR 412
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+ GL + + + V D+ L GG R+E+WLP
Sbjct: 413 ESGGTGLGLAIVSTAISQHNGKVTA-----NDSPL--GGLRLEIWLP 452
>gi|403743092|ref|ZP_10952807.1| signal transduction histidine kinase with CheB and CheR activity
[Alicyclobacillus hesperidum URH17-3-68]
gi|403123060|gb|EJY57239.1| signal transduction histidine kinase with CheB and CheR activity
[Alicyclobacillus hesperidum URH17-3-68]
Length = 1199
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+P N+ DV+ D+ + A + Q ++ + L++ E L+Q NL++ A+
Sbjct: 1045 FKPANLVDVIRDVVMLLETQALLNQVEIVFETAMEELMMECVENQLKQVFINLVKNAIEA 1104
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
GG V + A D L+ + D G + L G ++ +D T
Sbjct: 1105 MPNGGVVSVHLALTADEDVLLTVQDQGVGI----PEEKLARLGEPFYT---TKDKGTG-- 1155
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-SPAPLSD 615
GL V+ +++E +G +R S A G GT E+ LP +P +D
Sbjct: 1156 -LGLMVSFKIVEQHGGTIRYRS------APGQ-GTTAEIRLPLHKSPTAD 1197
>gi|386013645|ref|YP_005931922.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
gi|313500351|gb|ADR61717.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
Length = 459
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|255020611|ref|ZP_05292674.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
caldus ATCC 51756]
gi|340781140|ref|YP_004747747.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
caldus SM-1]
gi|254969996|gb|EET27495.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
caldus ATCC 51756]
gi|340555293|gb|AEK57047.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
caldus SM-1]
Length = 494
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L +L ++PL +Q+++E++ + L V + L Q LSNL+ A + V G
Sbjct: 347 LQELCGRMQPLLDRRQQKMEIA-VDAGLQVRADPKRLLQILSNLVSNA-HKYSVSGDTIR 404
Query: 516 VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 575
V+A A + + D GP + +L E F + N+ GL +ARE
Sbjct: 405 VAARAEGAGVRIQVRDHGPGIP-----EALLGRVFERFFQVSASSNLPRGTGLGLAIARE 459
Query: 576 LLESYGCVVRVIS-PWKTDAALGSGGTRVELWLPSPAP 612
L+ + +RV + P GG E+WLP+P P
Sbjct: 460 LVLAQHGEIRVRNHP--------QGGLSAEVWLPAPPP 489
>gi|225868205|ref|YP_002744153.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
subsp. zooepidemicus]
gi|225701481|emb|CAW98633.1| putative alkaline phosphatase synthesis sensor protein
[Streptococcus equi subsp. zooepidemicus]
Length = 441
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S+
Sbjct: 302 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQL-SSQ 358
Query: 520 APAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLES 579
AG + + D G + + L + N + GL + +EL +
Sbjct: 359 RVAGGVAITVADTGIGISQI----ELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQL 414
Query: 580 YGCVVRVISPWKTDAALGSGGTRVELWLP 608
G + V S LG G++ L+LP
Sbjct: 415 LGGQITVTSQ------LGE-GSQFTLFLP 436
>gi|269796545|ref|YP_003316000.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
10542]
gi|269098730|gb|ACZ23166.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
10542]
Length = 526
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 23/154 (14%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV-IDDDGPD 535
+E + ++V +E LRQ L NL+ A + T G +V V AG+ +VV + DDGP
Sbjct: 374 AEDADGVVVRGDEARLRQVLVNLLSNARVHTPPGTRV--VLGLRTAGEEVVVTVTDDGPG 431
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA-GLTVARELLESYGCVVRVISPWK--- 591
+ +L P + FS N G+ +A+ +++ +G V V SP
Sbjct: 432 IP-----STLLPTLFQRFSRGDAARNRVGGSTGLGMAIAQAIVQEHGGSVTVRSPASPQT 486
Query: 592 ---------TDAALGSG-GTRVELWLPSPAPLSD 615
D GSG GT E+ LPS AP D
Sbjct: 487 STGSEGPAGRDPRAGSGPGTTFEVTLPS-APAGD 519
>gi|317130174|ref|YP_004096456.1| integral membrane sensor signal transduction histidine kinase
[Bacillus cellulosilyticus DSM 2522]
gi|315475122|gb|ADU31725.1| integral membrane sensor signal transduction histidine kinase
[Bacillus cellulosilyticus DSM 2522]
Length = 475
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 456 LGDLFEAVRPLAHMQQR---QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGK 512
L +L+E+ R L Q+R ++E+ + Q L++ ++ + QAL NLIE A+ T G+
Sbjct: 329 LENLYES-RALMFDQKRIKHRIEIDKHCQELMIMMDSYRMEQALINLIENAIRHTPKDGE 387
Query: 513 VEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTV 572
+E++ + V + D G + H L + + + GL +
Sbjct: 388 IELI-LRKDDNEVTVCVKDTGCGI----SKHDLPHIWERFYKADASRNRNDSGTGLGLAI 442
Query: 573 ARELLESYGCVVRVISPWKTDAALGSGGT 601
+E++E++ V V S LG G T
Sbjct: 443 VKEVVEAHQGKVDVYSK------LGKGTT 465
>gi|148549506|ref|YP_001269608.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|395445157|ref|YP_006385410.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
gi|148513564|gb|ABQ80424.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|388559154|gb|AFK68295.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
Length = 459
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|306834848|ref|ZP_07467909.1| two component system sensor kinase [Corynebacterium accolens ATCC
49726]
gi|304569272|gb|EFM44776.1| two component system sensor kinase [Corynebacterium accolens ATCC
49726]
Length = 375
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASAALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPDQLGHIFERF----YRGDAARSRDDAGAGIGLTISKALIEAHGGTLTATSP 351
>gi|383640710|ref|ZP_09953116.1| two component sensor histidine kinase transcriptional regulatory
protein [Sphingomonas elodea ATCC 31461]
Length = 433
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541
L VA++ L + L NL++ A + V + +A A G+A V I+DDGP + +
Sbjct: 320 GLRVAIDAHDLAEMLGNLLDNAARHARA--TVSVTAAGASPGEACVTIEDDGPGIPPERR 377
Query: 542 MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
L P E D GL + R+LL YG + + D+AL GG
Sbjct: 378 EQVLQP--GVRLDEGPAGDGF------GLAIVRDLLALYGGRLAL-----EDSAL--GGL 422
Query: 602 RVELWLP 608
RV L P
Sbjct: 423 RVTLHCP 429
>gi|227548508|ref|ZP_03978557.1| two-component system sensor kinase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079416|gb|EEI17379.1| two-component system sensor kinase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 375
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 589
+ L + + + GLT+++ L+E++G + SP
Sbjct: 300 EGI----PPGQLGQIFERFYRGDAARNRDNGGAGIGLTISKALVEAHGGTLTATSP 351
>gi|163813914|ref|ZP_02205308.1| hypothetical protein COPEUT_00067 [Coprococcus eutactus ATCC 27759]
gi|158450784|gb|EDP27779.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Coprococcus eutactus ATCC 27759]
Length = 663
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM 542
+L ++ + Q + NLI+ AL T+ G ++ VSA GDA++ + D+G +
Sbjct: 542 ILARMDAQLIVQVIVNLIDNALKYTEQGSEI-CVSAEKQGGDAVIRVTDNGNGI-----A 595
Query: 543 HSLTPFGSELF--SENMVEDNMTWNFVAGLTVARELLESYG 581
+ P E+F +N V D+ +F GLT+ + ++E +G
Sbjct: 596 DDMKPHIFEMFYTGKNTVADSRR-SFGIGLTLCKSIIELHG 635
>gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
Length = 914
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P + +V+ E +P + ++ LS +Q L V + L Q ++NL+ A+ T
Sbjct: 618 QPVELKEVVMQAVETAQPAIESARHELTLSLPAQPLKVEADPVRLVQIVANLLNNAVNYT 677
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE-NMVEDNMTWNF 566
GG +++ A + G+A++ + D+G + + P+ ++F++ + D
Sbjct: 678 PSGGHIQLQVAQSQEGEAIIRVRDNGVGI-----LPEKLPYIFDIFTQADRSLDQAQSGL 732
Query: 567 VAGLTVARELLESYG 581
GLT+ L E +G
Sbjct: 733 GLGLTLVHRLTEMHG 747
>gi|393724369|ref|ZP_10344296.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. PAMC 26605]
Length = 837
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L Q +SNL+ AL T GG V I G ALV +DDDGP +
Sbjct: 473 LLQVISNLVSNALRVTATGGVVAIRVTQTDDGKALVAVDDDGPGI 517
>gi|148257912|ref|YP_001242497.1| two-component system histidine kinase [Bradyrhizobium sp. BTAi1]
gi|146410085|gb|ABQ38591.1| putative Two-component system histidine kinase [Bradyrhizobium sp.
BTAi1]
Length = 462
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 25/129 (19%)
Query: 484 LVAVEEPALRQALSNLIEGALM---RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540
++A + +LR+AL+NLI AL RT++ +VE +A +V+ DDGP +
Sbjct: 349 VIAADAISLREALANLIHNALAHGARTRLMVRVERAAA-----HVAIVVWDDGPGIAAEA 403
Query: 541 QMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGG 600
Q H ++PF + + + GL +A E+ +++G +R A G+G
Sbjct: 404 QQHLVSPFQ---------KGDGSHGSGLGLAIAAEVAQAHGGSLRF--------AGGAGD 446
Query: 601 TRVELWLPS 609
V +P+
Sbjct: 447 FSVRFEIPA 455
>gi|119899005|ref|YP_934218.1| putative sensory box sensor histidine kinase [Azoarcus sp. BH72]
gi|119671418|emb|CAL95331.1| putative sensory box sensor histidine kinase [Azoarcus sp. BH72]
Length = 393
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQ--SLLVAVEEPALRQALSNLIEGALMRTQ 508
V D++ +L + PLA + RQ+E S L + + AL AL+NL+E A+ T+
Sbjct: 233 GVCDLVAELTHTLEPLA--RARQIEFSSACSCGELSLYGDRKALGGALTNLLENAIQATE 290
Query: 509 VGGKVEIVSAAAPAGDA---LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565
GG V ++ A D V+ D G + Q PF F+ +
Sbjct: 291 AGGTVSCSASCAQGADGEQVRFVVSDSGRGIPAELQERLFEPF----FTTRAEGTGL--- 343
Query: 566 FVAGLTVARELLESYG 581
GL +AR + +G
Sbjct: 344 ---GLAIARGVARGHG 356
>gi|390570047|ref|ZP_10250319.1| GAF sensor hybrid histidine kinase [Burkholderia terrae BS001]
gi|389937934|gb|EIM99790.1| GAF sensor hybrid histidine kinase [Burkholderia terrae BS001]
Length = 595
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 24/163 (14%)
Query: 459 LFEAVRPLAH---MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+++A+ L H ++ ++ + L Q + V + L Q + NL+ A T GG +++
Sbjct: 295 VYDAITALKHHIDARKHRLVIEGLDQPVYVRADHVRLSQVVGNLLSNAAKYTPAGGTLQL 354
Query: 516 ---------VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
AA +G +VI+D+G M H F S E +
Sbjct: 355 RVQTDTDSAADEAAHSGMVSIVIEDNGVGMSPDALEHVFELFAQSPSSARRSEGGLGI-- 412
Query: 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 608
GL VA+ L+E +G + + S G G GTRV L LP
Sbjct: 413 --GLAVAKRLIELHGGTITLDSQ-------GVGLGTRVVLRLP 446
>gi|325275458|ref|ZP_08141388.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas sp. TJI-51]
gi|324099409|gb|EGB97325.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas sp. TJI-51]
Length = 459
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPQGGNV-IIRVLAP---AVLEVEDDGPGI 402
>gi|225870858|ref|YP_002746805.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
subsp. equi 4047]
gi|225700262|emb|CAW94499.1| putative alkaline phosphatase synthesis sensor protein
[Streptococcus equi subsp. equi 4047]
Length = 441
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S+
Sbjct: 302 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQL-SSQ 358
Query: 520 APAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLES 579
AG + + D G + + L + N + GL + +EL +
Sbjct: 359 RVAGGVAITVADTGIGISQI----ELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQL 414
Query: 580 YGCVVRVISPWKTDAALGSGGTRVELWLP 608
G + V S LG G++ L+LP
Sbjct: 415 LGGQITVTSQ------LGE-GSQFTLFLP 436
>gi|145550561|ref|XP_001460959.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428790|emb|CAK93562.1| unnamed protein product [Paramecium tetraurelia]
Length = 441
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLAL 439
++ + ++NN + ++ QL ++F R + + P P K+++ PP+ +
Sbjct: 4 QQIVAQLNNKVEECLQDVQQQLDSSFRRIEAF--IDQFALPPYQSDPNKNVDFARPPVEI 61
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHM------QQRQVELSELSQSLLVAVEEPALR 493
PLKQ + + + ++P+ H+ +Q QV+L++L QS + V++ L+
Sbjct: 62 QPLKQT---------LANQITQGIKPITHLAIPQQNKQNQVQLTQL-QSKQIQVQQDELK 111
Query: 494 QALSN 498
+++N
Sbjct: 112 DSITN 116
>gi|398983801|ref|ZP_10690230.1| signal transduction histidine kinase [Pseudomonas sp. GM24]
gi|399012568|ref|ZP_10714888.1| signal transduction histidine kinase [Pseudomonas sp. GM16]
gi|398115401|gb|EJM05185.1| signal transduction histidine kinase [Pseudomonas sp. GM16]
gi|398156637|gb|EJM45052.1| signal transduction histidine kinase [Pseudomonas sp. GM24]
Length = 461
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|163856323|ref|YP_001630621.1| sensor histidine kinase [Bordetella petrii DSM 12804]
gi|163260051|emb|CAP42352.1| sensor histidine kinase [Bordetella petrii]
Length = 411
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 496 LSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
+ NL++ A+ T VGG +E+ A AP G AL+ + DDGP
Sbjct: 310 VGNLMDNAVRYTPVGGNIEVRCAPAPDGGALLSVADDGP 348
>gi|392422929|ref|YP_006459533.1| two-component sensor PhoQ [Pseudomonas stutzeri CCUG 29243]
gi|390985117|gb|AFM35110.1| two-component sensor PhoQ [Pseudomonas stutzeri CCUG 29243]
Length = 446
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 25/137 (18%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGA--LMRTQVGGKVEIVSAAAPAGDALVVID 530
QVE+ +L++ LV +E+ AL + L NL+E A L QV +SA+ GD L+ ++
Sbjct: 328 QVEM-QLAEPCLVPMEQGALMELLGNLLENAYRLCLQQV-----RISASHHEGDLLLGVE 381
Query: 531 DDGPDMHYMTQMHSLTPFGSELFSENMVE--DNMTWNFVAGLTVARELLESYGCVVRVIS 588
DDGP + P G E D GL V +++L+SYG + +
Sbjct: 382 DDGPGV----------PVGQRERIIRRGERLDGQHPGQGIGLAVVKDILDSYGGELSL-- 429
Query: 589 PWKTDAALGSGGTRVEL 605
++ALG R+ L
Sbjct: 430 ---GESALGGAAFRIRL 443
>gi|416959821|ref|ZP_11936193.1| signal transduction histidine kinase with CheB and CheR activity
[Burkholderia sp. TJI49]
gi|325522177|gb|EGD00827.1| signal transduction histidine kinase with CheB and CheR activity
[Burkholderia sp. TJI49]
Length = 1219
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 23/168 (13%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P + + ++ + E+ RP+A ++ + + L+ +V+ + L+Q SNLI AL T
Sbjct: 925 KPADFAAIVQTVVESNRPVAARKEISLATAGLNARAVVSGDARRLQQVASNLIGNALKFT 984
Query: 508 QVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVED-NMTWN 565
GG+VE+ A G L + + D+G + Q+ P+ LF M D + T N
Sbjct: 985 PQGGRVEV--ALTRLGTMLELSVTDNGIGVS-AEQL----PY---LFDRFMQSDTSRTRN 1034
Query: 566 FVA---GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPS 609
+ GL++ + L+ ++G V T ++ G G GTR+ + LPS
Sbjct: 1035 YGGLGLGLSIVKHLVTAHGGTV-------TASSEGEGRGTRLTVRLPS 1075
>gi|291288471|ref|YP_003505287.1| integral membrane sensor signal transduction histidine kinase
[Denitrovibrio acetiphilus DSM 12809]
gi|290885631|gb|ADD69331.1| integral membrane sensor signal transduction histidine kinase
[Denitrovibrio acetiphilus DSM 12809]
Length = 460
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL 476
+C+ +D + + MP +Q +R N+ ++L E ++PLA+ + ++
Sbjct: 291 ACEVNKIDHIMQSLFADMP-------EQLEVRIANIQNILSLTLEELKPLANAKSIKIHF 343
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD-DGPD 535
E +LV ++ LSNL++ AL G + I + G ++ + DD DG D
Sbjct: 344 IEKENIVLVKCYPILIQLMLSNLLDNALEAIGTFGNIYIEVETSEDGTSIEICDDGDGID 403
>gi|295690559|ref|YP_003594252.1| histidine kinase [Caulobacter segnis ATCC 21756]
gi|295432462|gb|ADG11634.1| histidine kinase [Caulobacter segnis ATCC 21756]
Length = 264
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMR 506
P ++ + L D+ E +RP + +R+V + + Q L V + LR LSNL++ A+
Sbjct: 115 PESLDEALEDVIEGLRP--EIARREVIIHIIGQGALPLVIADSRGLRTMLSNLLQNAVTH 172
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF---GSELFSEN 556
+ GG V V+A + V I D GP + L PF GS L N
Sbjct: 173 SPAGGVVH-VAAGRIGAEVEVTIRDQGPGVDSAELPRLLQPFEQGGSPLTRAN 224
>gi|195978473|ref|YP_002123717.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195975178|gb|ACG62704.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
equi subsp. zooepidemicus MGCS10565]
Length = 432
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S
Sbjct: 293 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQR 350
Query: 520 APAGDALVVID 530
G A+ V D
Sbjct: 351 VAGGVAITVAD 361
>gi|134291092|ref|YP_001114861.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia vietnamiensis G4]
gi|134134281|gb|ABO58606.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia vietnamiensis G4]
Length = 386
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSN 498
A ++++G +V +L D E +P+A ++ + L S++ ++A +P L QA+ N
Sbjct: 229 AGVRRSGFVKSDVVTILSDAVEFYQPVAELRGISLTLLLCSETEVLAEVDPLLLAQAIGN 288
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538
LI+ AL Q G+VE VS V + DDGP + +
Sbjct: 289 LIDNALKYAQDNGEVE-VSLCERDDRIEVTVSDDGPGIPF 327
>gi|167839157|ref|ZP_02465934.1| sensor histidine kinase [Burkholderia thailandensis MSMB43]
Length = 442
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+AL NLI + + + +A AG ++ +DDDGP + + PF
Sbjct: 325 RALLNLIRNGM--RYASSTISLRAALGEAGALVLTVDDDGPGIPAADRDRVFEPF----H 378
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS-PAP 612
+ D +T F GLT+ R + ++G VR+ D+ L GG R + LP+ AP
Sbjct: 379 RLDSSRDRLTGGFGLGLTIVRRVALAHGGDVRL-----DDSPL--GGARFVITLPALDAP 431
Query: 613 LSDLNGKS 620
+ +S
Sbjct: 432 AREQKARS 439
>gi|398824145|ref|ZP_10582488.1| histidine kinase, partial [Bradyrhizobium sp. YR681]
gi|398225169|gb|EJN11448.1| histidine kinase, partial [Bradyrhizobium sp. YR681]
Length = 356
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + L+ S +++ + +R+A+ NLI A+ +
Sbjct: 204 PVDVAALVKEVAEANQPLAVNKQQTISLATPS-NIVTMCDTDRIREAIDNLISNAIKYSP 262
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GG++ V+ + D +V + D+G +
Sbjct: 263 IGGRIG-VAVSHEGSDTIVRVSDEGAGL 289
>gi|387905967|ref|YP_006336304.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia sp. KJ006]
gi|387580859|gb|AFJ89573.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia sp. KJ006]
Length = 386
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSN 498
A ++++G +V +L D E +P+A ++ + L S++ ++A +P L QA+ N
Sbjct: 229 AGVRRSGFVKSDVVTILSDAVEFYQPVAELRGISLTLLLCSETEVLAEVDPLLLAQAIGN 288
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538
LI+ AL Q G+VE VS V + DDGP + +
Sbjct: 289 LIDNALKYAQDNGEVE-VSLCERDDRIEVTVSDDGPGIPF 327
>gi|365861540|ref|ZP_09401309.1| putative two-component system sensor kinase [Streptomyces sp. W007]
gi|364008969|gb|EHM29940.1| putative two-component system sensor kinase [Streptomyces sp. W007]
Length = 532
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID--DDGPDMHYMTQMHSLTPFG 549
LRQA+ NL+ A+ T GG+V + + + GD V+++ D G + H F
Sbjct: 418 LRQAVGNLVSNAVRHTPEGGRVTLRAYVSDEGDGAVLVEVADTGSGIRSEDLPHVFDRF- 476
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ T GL + R+L+E++G V S G G T V L LP
Sbjct: 477 ---WRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVEATS------VEGKGSTFV-LRLPG 526
Query: 610 PAP 612
P
Sbjct: 527 TTP 529
>gi|377813471|ref|YP_005042720.1| histidine kinase [Burkholderia sp. YI23]
gi|357938275|gb|AET91833.1| histidine kinase [Burkholderia sp. YI23]
Length = 466
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 466 LAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
LA QQR ++L +E+ L V L +SNLI+ A+ TQ GG+V +V A A
Sbjct: 322 LAAAQQRNIDLGAEIGDGLWVKGNAELLMALVSNLIDNAIRYTQTGGRVTVV-AKREADR 380
Query: 525 ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
+ + D+GP + + F S T GL +ARE+ +G V
Sbjct: 381 IVSRVMDNGPGIPDDIRERVFERFVRGFAS--------TEGTGLGLPIAREIARRHGGDV 432
Query: 585 RVIS 588
R+ +
Sbjct: 433 RLAT 436
>gi|118764439|emb|CAL80818.1| two-component hybrid sensor/regulator [[Polyangium] brachysporum]
Length = 706
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V V+ E RPL + Q+E++ LLV + L Q LSNL+ A T
Sbjct: 404 PVSVGQVVESALETSRPLIEAARHQLEVAVPGADLLVMGDATRLSQVLSNLLNNAAKYTP 463
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
G + VS L+ + D+G + Q H F + +
Sbjct: 464 AAGHIR-VSVRQVGSQVLLEVADNGIGIVPGEQKHLFNMFVRSQREAHQWQRGQG-GLGI 521
Query: 569 GLTVARELLESYGCVVRVIS 588
GL +A++L+E +G + V S
Sbjct: 522 GLALAKQLVEMHGGSIGVHS 541
>gi|288961887|ref|YP_003452197.1| two-component sensor histidine kinase [Azospirillum sp. B510]
gi|288914167|dbj|BAI75653.1| two-component sensor histidine kinase [Azospirillum sp. B510]
Length = 536
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 461 EAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI-VSAA 519
+AV A + R + L SL VA+ + +L L+NLIE A R G + V+
Sbjct: 400 DAVPVAARLADRHGADTSLPASLPVAIGQESLESVLANLIENA--RHHAGADARVTVTLR 457
Query: 520 APAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLES 579
A A++ + DDGP + PF F+ D GLT+AR L+E+
Sbjct: 458 AEGERAILRVADDGPGISPANADRVFVPF----FT--TARDRSGTGL--GLTIARGLVEA 509
Query: 580 YGCVVRVI 587
+G + ++
Sbjct: 510 HGGSITLL 517
>gi|163867949|ref|YP_001609153.1| sensor histidine kinase [Bartonella tribocorum CIP 105476]
gi|161017600|emb|CAK01158.1| sensor histidine kinase [Bartonella tribocorum CIP 105476]
Length = 446
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
AH+ +RQ + + + + V A + +SNL+ A G I++A + +
Sbjct: 320 AHLHKRQFSYT-IEGATQIQVRPRAFTRLVSNLVSNAF----CYGTTVILTANSQQESFI 374
Query: 527 VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV 586
++IDDDGP +H + PF F + + GL++A+++ S+G +++
Sbjct: 375 LIIDDDGPGIHKNMRTEVFKPF----FRIDKARNQDASGTGLGLSIAQDIARSHGGNIQL 430
>gi|330808063|ref|YP_004352525.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376171|gb|AEA67521.1| putative Histidine kinase, Classic [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 463
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|118577251|ref|YP_899491.1| integral membrane sensor signal transduction histidine kinase
[Pelobacter propionicus DSM 2379]
gi|118504756|gb|ABL01238.1| integral membrane sensor signal transduction histidine kinase
[Pelobacter propionicus DSM 2379]
Length = 372
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 466 LAHMQQRQVELSELSQSLLVAVEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAG 523
L+ ++RQ+ L S V ++ LRQA N+I AL T +GG+V I + +
Sbjct: 235 LSGARERQITLELKSPPFPVTIQADGDKLRQAFLNIIINALQATPIGGRVLISTTVHAST 294
Query: 524 DALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCV 583
+ D GP M T PF F+ + GL + ++++E++G
Sbjct: 295 TCEIQFHDTGPGMDAATMERMFEPF----FTTKPGGTGL------GLVITKKIIETHGGT 344
Query: 584 VRVISPWKTDAALGSGGTRV 603
+ V ++ +G G T +
Sbjct: 345 LMV------ESEVGKGTTVI 358
>gi|428299234|ref|YP_007137540.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 6303]
gi|428235778|gb|AFZ01568.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 6303]
Length = 455
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
C ++D++ DL E LA+ Q+ S E SQ L V +E + + SNLI A+ T
Sbjct: 303 CCLNDLINDLLEEFSDLANNTDLQLTSSLEYSQPLHVLGDEDQILRLFSNLIANAIQYTP 362
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDG 533
GG V V+ DA+V + D G
Sbjct: 363 AGGYVN-VTLKRNNDDAVVEVRDTG 386
>gi|168699062|ref|ZP_02731339.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 682
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
++D + E RPL ++ ++ +S + + + L Q NL+ A T GG
Sbjct: 391 LADAIARAVETARPLIESRRHELIVSVPPDPIPLDADPTRLTQIFGNLLNNAAKYTDPGG 450
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFS-ENMVEDNMTWNFVAGL 570
++E+ SAA G A+V + D+G + + + +LF+ E D GL
Sbjct: 451 RIEL-SAAREGGGAVVRVRDNGIGLSPEMLLRAF-----DLFTQEPRTLDRAQGGLGIGL 504
Query: 571 TVARELLESYGCVV 584
T+ R L+E +G V
Sbjct: 505 TLVRNLVELHGGSV 518
>gi|90421623|ref|YP_529993.1| response regulator receiver sensor signal transduction histidine
kinase [Rhodopseudomonas palustris BisB18]
gi|90103637|gb|ABD85674.1| response regulator receiver sensor signal transduction histidine
kinase [Rhodopseudomonas palustris BisB18]
Length = 582
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++S ++ ++ EA RPLA +Q+++ +S Q + + +R+A+ NL+ A+ +
Sbjct: 429 PVDISALVTEVAEANRPLALNKQQEITVSA-PQDQVTVCDSDRIREAIDNLVSNAIKYSP 487
Query: 509 VGGKVEIV 516
VGGK+ ++
Sbjct: 488 VGGKIALI 495
>gi|440713478|ref|ZP_20894079.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
baltica SWK14]
gi|436441944|gb|ELP35136.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
baltica SWK14]
Length = 232
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 32/185 (17%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L A L+ + P +++D + + +A + A Q VEL L + + AL+
Sbjct: 73 LRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQD--VELQRYLDPDLPSIRLHSDALQS 130
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-----DDGPDMHYMTQMHSLTPFG 549
AL NL++ AL GG++ + + G L +ID DD +H +S G
Sbjct: 131 ALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVLHMFEPFYSTKDGG 190
Query: 550 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
S L GL AR+++E++G + V S GT+ L P
Sbjct: 191 SGL----------------GLPTARKIIEAHGARISVQSETGR-------GTKFSLQFPV 227
Query: 610 PAPLS 614
PA L
Sbjct: 228 PARLG 232
>gi|399049014|ref|ZP_10740258.1| PAS domain S-box [Brevibacillus sp. CF112]
gi|433544767|ref|ZP_20501142.1| two-component sensor histidine kinase [Brevibacillus agri BAB-2500]
gi|398053212|gb|EJL45415.1| PAS domain S-box [Brevibacillus sp. CF112]
gi|432183956|gb|ELK41482.1| two-component sensor histidine kinase [Brevibacillus agri BAB-2500]
Length = 608
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 14/200 (7%)
Query: 413 KLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR-PCNVSDVLGDL-FEAVRPLAHMQ 470
+L N +++ + I + L L+ G+R C +D+ L + A R +
Sbjct: 411 ELSNRFLKVTMSETERMIRLVNDLLQLSRFDSQGVRLHCKEADISRLLRYAADRFSMFSE 470
Query: 471 QRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
Q++V+L+ + L V ++ A+ Q L NL+ A+ T GG V ++SA V
Sbjct: 471 QQEVQLTVDVPNKLPPVYIDLDAINQVLDNLLSNAIKYTSQGGTV-VLSAKENRSQKRVQ 529
Query: 529 IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
I D L + + GL +AREL++++G + + S
Sbjct: 530 ISI--SDTGIGIPARDLKRIFERFYRVDKARSRGQGGTGLGLAIARELVQAHGADIEITS 587
Query: 589 PWKTDAALGSGGTRVELWLP 608
W GT V W+P
Sbjct: 588 EWNV-------GTTVTFWVP 600
>gi|424905331|ref|ZP_18328838.1| sensor histidine kinase [Burkholderia thailandensis MSMB43]
gi|390929725|gb|EIP87128.1| sensor histidine kinase [Burkholderia thailandensis MSMB43]
Length = 442
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+AL NLI + + + +A AG ++ +DDDGP + + PF
Sbjct: 325 RALLNLIRNGM--RYASSTISLRAALGEAGALVLTVDDDGPGIPAADRDRVFEPF----H 378
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS-PAP 612
+ D +T F GLT+ R + ++G VR+ D+ L GG R + LP+ AP
Sbjct: 379 RLDSSRDRLTGGFGPGLTIVRRVALAHGGDVRL-----DDSPL--GGARFVITLPALDAP 431
Query: 613 LSDLNGKS 620
+ +S
Sbjct: 432 AREQKARS 439
>gi|320107595|ref|YP_004183185.1| integral membrane sensor signal transduction histidine kinase
[Terriglobus saanensis SP1PR4]
gi|319926116|gb|ADV83191.1| integral membrane sensor signal transduction histidine kinase
[Terriglobus saanensis SP1PR4]
Length = 449
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELS---QSLLVAVEEPALRQALSNLIEGALMRTQ 508
V DVL L E + A + +Q+ S +S S VA L +AL N++ L +
Sbjct: 296 VFDVLA-LVEEAKDNAEFEAKQIGKSVISLRADSFHVAGYPDLLLRALDNVLRNGLRFAR 354
Query: 509 VGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
G+V+I P G A V+ I DDGP + T+ PF + S + + + + +
Sbjct: 355 ANGEVQIDCYPKPDGSAGVIHIQDDGPGIPLGTEESIFEPFVT--LSPSGTDPALNGSGL 412
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 603
GL + R+ + S G V+ +S LG+G T V
Sbjct: 413 -GLAITRQAVLSNGGTVKALS------VLGTGLTVV 441
>gi|222528132|ref|YP_002572014.1| PAS/PAC sensor signal transduction histidine kinase
[Caldicellulosiruptor bescii DSM 6725]
gi|312621185|ref|YP_004022798.1| multi-sensor signal transduction histidine kinase
[Caldicellulosiruptor kronotskyensis 2002]
gi|222454979|gb|ACM59241.1| PAS/PAC sensor signal transduction histidine kinase
[Caldicellulosiruptor bescii DSM 6725]
gi|312201652|gb|ADQ44979.1| multi-sensor signal transduction histidine kinase
[Caldicellulosiruptor kronotskyensis 2002]
Length = 571
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I N+S+++ + E +R A+ ++ Q L + + +++ + L Q L NLI A+
Sbjct: 414 IEEVNISELVRFVCEKMRIHAN-KKHQSLLCNVQEDIIIDADRDRLEQVLINLINNAITY 472
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGP 534
Q GG++E V G+ + ++D+GP
Sbjct: 473 VQDGGRIE-VCLKKENGNIELTVEDNGP 499
>gi|163761562|ref|ZP_02168634.1| probable phosphate regulon sensor histidine kinase transmembrane
protein [Hoeflea phototrophica DFL-43]
gi|162281276|gb|EDQ31575.1| probable phosphate regulon sensor histidine kinase transmembrane
protein [Hoeflea phototrophica DFL-43]
Length = 435
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+G + + +RP+A+ ++ L+ + + V + L Q SNLIE A Q G +VEI
Sbjct: 279 VGHVIDTLRPMANELGVEIALTAPEEPVQVVGDVDELIQVFSNLIENACKYGQTGKRVEI 338
Query: 516 VSAAAPAGDALVVIDDDGPDM 536
+ + G A V + D GP +
Sbjct: 339 SVSGSEPGGAQVSVRDFGPGI 359
>gi|347527845|ref|YP_004834592.1| putative two-component system sensor histidine kinase [Sphingobium
sp. SYK-6]
gi|345136526|dbj|BAK66135.1| putative two-component system sensor histidine kinase [Sphingobium
sp. SYK-6]
Length = 783
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547
+E +RQA+ ++++ A+ Q GG+V ++ +++ DDGP + Q
Sbjct: 674 DERRIRQAVEHVVDNAVRFVQDGGRV-LIHGEGTHKSVRIIVSDDGPGIESRLQARLFDS 732
Query: 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
F F N + GL + R+ +ES+G V ++S
Sbjct: 733 FAR--FGRNAAGETTG----LGLPLVRQFVESHGGSVSLVS 767
>gi|296535199|ref|ZP_06897417.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
gi|296264478|gb|EFH10885.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
Length = 460
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 30/162 (18%)
Query: 458 DLFEAVRPLAHMQQRQ-VELS-ELSQSLLVAVEEPALRQALSNLIEGA---LMRTQVG-G 511
DL E VR LA +R +S E ++L++ + ALR+ L NL++ A R +G
Sbjct: 319 DLAELVRDLAERARRDGAAISIEGPEALVLPLRVDALRRCLGNLLDNARRHARRIALGLA 378
Query: 512 KVEIVSAAAPAGD-ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
+ A PAG V IDDDGP + + + PF S FS GL
Sbjct: 379 EAPRQEAGRPAGRWVFVTIDDDGPGIPEAAREEAFRPFTS--FSAG--------GTGLGL 428
Query: 571 TVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLPS 609
+AR++ ++G D AL + GG R L LP+
Sbjct: 429 AIARDIARAHGG----------DIALEASPLGGLRARLRLPA 460
>gi|134295445|ref|YP_001119180.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia vietnamiensis G4]
gi|134138602|gb|ABO54345.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia vietnamiensis G4]
Length = 427
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSEL 552
+AL NLI + + ++SAA+ A ALV+ +DDDGP + + PF L
Sbjct: 325 RALLNLIRNG---ARYASRTVLLSAASDASGALVLSVDDDGPGIPVADRARVFEPF-QRL 380
Query: 553 FSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
S D T F GL + R + +G V W D+ L GG R + LP
Sbjct: 381 DSSR---DRQTGGFGLGLAIVRRVARVHGGEV-----WLEDSPL--GGARFVISLPG 427
>gi|448426216|ref|ZP_21583162.1| multi-sensor signal transduction histidine kinase [Halorubrum
terrestre JCM 10247]
gi|445679707|gb|ELZ32167.1| multi-sensor signal transduction histidine kinase [Halorubrum
terrestre JCM 10247]
Length = 552
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
+VA + LRQAL NL A+ T G V + A P GD V DDGP
Sbjct: 439 VVAADRSRLRQALENLFGNAV--THAGPDVAVTVGALPDGDGFYVA-DDGP--------- 486
Query: 544 SLTPFGSE-LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTR 602
+ P E +F + D F GL + E+ E++G V + A +GGTR
Sbjct: 487 GIDPADREAVFEAGVTSDPDGTGF--GLKIVGEVAEAHGWTVEL-------AESETGGTR 537
Query: 603 VEL 605
E
Sbjct: 538 FEF 540
>gi|421486269|ref|ZP_15933816.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter piechaudii HLE]
gi|400195482|gb|EJO28471.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter piechaudii HLE]
Length = 470
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++ D+ + + P A +Q + L + +LV+ E LR+A +NL++ A+
Sbjct: 309 VDLVDLADGVIRGLLPTARARQLDIGLEAAVRPVLVSGTEWLLREAATNLVDNAIRYASP 368
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
G+V V+ A G A ++++DDGP M
Sbjct: 369 AGEV-TVTVQAGDGLARLIVEDDGPGM 394
>gi|423695845|ref|ZP_17670335.1| sensor histidine kinase [Pseudomonas fluorescens Q8r1-96]
gi|388009640|gb|EIK70891.1| sensor histidine kinase [Pseudomonas fluorescens Q8r1-96]
Length = 463
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|421868427|ref|ZP_16300075.1| Sensory histidine kinase QseC [Burkholderia cenocepacia H111]
gi|444370717|ref|ZP_21170355.1| GHKL domain protein [Burkholderia cenocepacia K56-2Valvano]
gi|358071449|emb|CCE50953.1| Sensory histidine kinase QseC [Burkholderia cenocepacia H111]
gi|443596941|gb|ELT65403.1| GHKL domain protein [Burkholderia cenocepacia K56-2Valvano]
Length = 448
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATMREPVDLQALLAECVAAHAPLA--QRRDIDLGFEETRAASVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|262198527|ref|YP_003269736.1| histidine kinase [Haliangium ochraceum DSM 14365]
gi|262081874|gb|ACY17843.1| histidine kinase [Haliangium ochraceum DSM 14365]
Length = 408
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
S ++ + V+E + Q LI AL+ G KV V A + V + DDGP +
Sbjct: 290 SDAVHLPVDEGRISQVFGQLISNALLHCPPGTKVH-VDIACGEREVTVTVSDDGPGIPTA 348
Query: 540 TQMHSLTPFG---SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAAL 596
+ PFG E+ ++ + GL VAR ++E + + +IS DA
Sbjct: 349 VRERLFRPFGKPHGEVAPKH-------YGAGVGLAVARRIVEGHDGCLDLIS--SADA-- 397
Query: 597 GSGGTRVELWLP 608
GTR + LP
Sbjct: 398 ---GTRFRVRLP 406
>gi|456353095|dbj|BAM87540.1| putative two-component sensor histidine kinase [Agromonas
oligotrophica S58]
Length = 450
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 477 SELSQSLLVAVEEP-ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+EL + L+ + EP ALR+ NLIE AL R V ++ P D ++ IDDDGP
Sbjct: 331 AELGHTPLIVLAEPTALRRLFINLIENAL-RFATRCTVRVL----PEKDVVIAIDDDGPG 385
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGC 582
+ + PF F + T GL + +++ +++G
Sbjct: 386 IPADARNAVFEPF----FRLDNSRSRSTGGSGLGLAIVKQIADAHGA 428
>gi|91780141|ref|YP_555348.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
gi|91692801|gb|ABE35998.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
Length = 568
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 20/171 (11%)
Query: 447 IRPCNVS--DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
I+ N S ++ D AVR ++ ++++ L + + V + L Q L NL+ A
Sbjct: 261 IKHSNTSLNEIAFDAVTAVRHHIESRRHSLKVTGLDEQVPVRADHVRLSQVLGNLLSNAA 320
Query: 505 MRTQVGGKVEI-VSAAA---PAGDALVVID--DDGPDMHYMTQMHSLTPFGSELFSENMV 558
T GG +E+ V AA PA LVVI+ D+G + Q H F
Sbjct: 321 KYTPTGGTIELTVKVAADEEPAQPDLVVIEVKDNGIGIDSSVQPHVFELFAQSARGNARA 380
Query: 559 EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 608
E + GL VA+ ++E + + + S GSG GT V L LP
Sbjct: 381 EGGLGI----GLAVAKRMVELHDGTISLQSD-------GSGRGTSVTLRLP 420
>gi|163744527|ref|ZP_02151887.1| probable two-component sensor histidine kinase protein
[Oceanibulbus indolifex HEL-45]
gi|161381345|gb|EDQ05754.1| probable two-component sensor histidine kinase protein
[Oceanibulbus indolifex HEL-45]
Length = 438
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
++ +V+G++ E P A ++ + + L V + L Q LSNL+E A+ G
Sbjct: 295 DLREVIGNVTEVFEPTAEDAGIELTIKVPDEQLEVFGDRNLLTQLLSNLVENAIKHCPAG 354
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
KV + P G ++ I DDGP + Q F S N + + GL
Sbjct: 355 SKVLVSGENTPEG-LILRITDDGPGIECRDQERIFHRFFRGEKSRNSPGNGL------GL 407
Query: 571 TVARELLESYGCVVRV 586
+A+ + + +G V+ V
Sbjct: 408 ALAKAICDLHGAVITV 423
>gi|392954253|ref|ZP_10319805.1| hypothetical protein WQQ_38770 [Hydrocarboniphaga effusa AP103]
gi|391858152|gb|EIT68682.1| hypothetical protein WQQ_38770 [Hydrocarboniphaga effusa AP103]
Length = 475
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIE 501
++ G ++S L L E PLA + + V S E+ + L V + + +A+SNL+
Sbjct: 311 RRAGFDGTDLSATLRQLHELYAPLA--EDKGVRFSLEIVEPLEVRADTGLMFEAMSNLVS 368
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN 561
A+ T GG V + + PAG + V+ D GP + + L F SEN +
Sbjct: 369 NAIKFTPAGGDVRLCAGLTPAGVRVDVV-DSGPGIPAEERDSVLQRF---YRSENCRD-- 422
Query: 562 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 605
F GL++ ++ +G + + AA GGTRV L
Sbjct: 423 -VEGFGLGLSIVAAIVRLHGFQLEIA------AAHDGGGTRVSL 459
>gi|206561167|ref|YP_002231932.1| two-component regulatory system, sensor kinase protein
[Burkholderia cenocepacia J2315]
gi|198037209|emb|CAR53130.1| two-component regulatory system, sensor kinase protein
[Burkholderia cenocepacia J2315]
Length = 448
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATMREPVDLQALLAECVAAHAPLA--QRRDIDLGFEETRAASVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|404494772|ref|YP_006718878.1| sensor histidine kinase, HAMP domain-containing [Pelobacter
carbinolicus DSM 2380]
gi|77546755|gb|ABA90317.1| sensor histidine kinase, HAMP domain-containing [Pelobacter
carbinolicus DSM 2380]
Length = 477
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS---ELSQSLLVAVEEPALRQALSNLIEGA 503
I+ ++SD+L +L+ R LA Q + +EL +++ + + ++ LRQ NLI A
Sbjct: 314 IKEMSLSDLLQELYLQGRSLA--QPKSIELVLHPNVTEEIRILADKMRLRQVFLNLIANA 371
Query: 504 LMRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562
+ T GG+VEI +S + +V + D G + H F + N ED
Sbjct: 372 INYTPDGGQVEISLSVDGEQDEVIVKVSDTGIGIPAEHLPHIFDRFYRVDRARNR-EDGG 430
Query: 563 TWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLPSPAP 612
T GL + ++++G V V S P K GT ++LP P
Sbjct: 431 TG---LGLAIVDSFVKAHGGRVEVFSVPEK--------GTTFTVFLPRKGP 470
>gi|398886955|ref|ZP_10641789.1| signal transduction histidine kinase [Pseudomonas sp. GM60]
gi|398186601|gb|EJM73971.1| signal transduction histidine kinase [Pseudomonas sp. GM60]
Length = 461
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|378949339|ref|YP_005206827.1| protein TctE [Pseudomonas fluorescens F113]
gi|359759353|gb|AEV61432.1| TctE [Pseudomonas fluorescens F113]
Length = 463
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|334339006|ref|YP_004543986.1| ATP-binding protein [Desulfotomaculum ruminis DSM 2154]
gi|334090360|gb|AEG58700.1| ATP-binding region ATPase domain protein [Desulfotomaculum ruminis
DSM 2154]
Length = 473
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +L + ++PLA +Q ++E+ E ++ + + L QAL N++ A+ T
Sbjct: 318 PIKAGSLLEEALWVMKPLAAERQVKLEMKEAGEAWIEG-DPDWLHQALVNVLGNAVYYTP 376
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG++ I G VVI+D G + M LT G+ F + + +
Sbjct: 377 TGGRIGI-QTEIKQGQVHVVIEDSGKGV----PMEVLTRLGTRFFRPSTARERSSGGSGL 431
Query: 569 GLTVARELLESYGCVVRVISP 589
GL++ +++L + + SP
Sbjct: 432 GLSIVKDILRLHNGRLEFASP 452
>gi|448452463|ref|ZP_21593346.1| multi-sensor signal transduction histidine kinase [Halorubrum
litoreum JCM 13561]
gi|445808784|gb|EMA58839.1| multi-sensor signal transduction histidine kinase [Halorubrum
litoreum JCM 13561]
Length = 552
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
+VA + LRQAL NL A+ T G V + A P GD V DDGP
Sbjct: 439 VVAADRSRLRQALENLFGNAV--THAGPDVAVTVGALPDGDGFYVA-DDGP--------- 486
Query: 544 SLTPFGSE-LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTR 602
+ P E +F + D F GL + E+ E++G V + A +GGTR
Sbjct: 487 GIDPADREAVFEAGVTSDPDGTGF--GLKIVGEVAEAHGWTVEL-------AESETGGTR 537
Query: 603 VEL 605
E
Sbjct: 538 FEF 540
>gi|441499069|ref|ZP_20981258.1| two-component response regulator [Fulvivirga imtechensis AK7]
gi|441437134|gb|ELR70489.1| two-component response regulator [Fulvivirga imtechensis AK7]
Length = 399
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+V+ V+ + + +A + +E+ +L+ L V +E L+ L NLI A+ T+
Sbjct: 251 VDVNAVIEKILTQLAAVAGNKNINLEM-DLADGLKVYADEDHLKLVLRNLISNAIKFTEP 309
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
GGKV + + A A +V+ D G M + ++ +L G ++ + T G
Sbjct: 310 GGKVSVTTKAIDKSKAEIVVADTGVGMS-IEKLTTLFNIGDNQSTKGTAGEKGTG---LG 365
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610
L + +E +E + V A+L GT + L P
Sbjct: 366 LILCKEFVEKNSGSIEV-------ASLKGMGTTFTVTLNQP 399
>gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 576
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 28/189 (14%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P ++ ++L + VR A +Q+ Q++L + L+ ++ +Q + NL+ A+
Sbjct: 389 LEPVDLDELLSNSLLIVREQAALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKF 448
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGP----------DMHYMTQMHSLTPFG------S 550
+Q GG V + P A V++ D P + H++ S T G +
Sbjct: 449 SQPGGWVILAVRQVPRSQA-GVLEGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMN 507
Query: 551 ELFSE-NMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 606
+LF + ++ + F GL + ++L E +G V V A++ GTR +W
Sbjct: 508 KLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHGGCVAV-------ASVKDLGTRFVVW 560
Query: 607 LPSPAPLSD 615
LP P S+
Sbjct: 561 LPIRPPASE 569
>gi|448508138|ref|ZP_21615372.1| multi-sensor signal transduction histidine kinase [Halorubrum
distributum JCM 9100]
gi|448518396|ref|ZP_21617473.1| multi-sensor signal transduction histidine kinase [Halorubrum
distributum JCM 10118]
gi|445697715|gb|ELZ49775.1| multi-sensor signal transduction histidine kinase [Halorubrum
distributum JCM 9100]
gi|445704977|gb|ELZ56881.1| multi-sensor signal transduction histidine kinase [Halorubrum
distributum JCM 10118]
Length = 552
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
+VA + LRQAL NL A+ T G V + A P GD V DDGP
Sbjct: 439 VVAADRSRLRQALENLFGNAV--THAGPDVAVTVGALPDGDGFYVA-DDGP--------- 486
Query: 544 SLTPFGSE-LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTR 602
+ P E +F + D F GL + E+ E++G V + A +GGTR
Sbjct: 487 GIDPADREAVFEAGVTSDPDGTGF--GLKIVGEVAEAHGWTVEL-------AESETGGTR 537
Query: 603 VEL 605
E
Sbjct: 538 FEF 540
>gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM
13855]
Length = 720
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L + + P A E+ + + ++ V+ ++ AL NLI A+ T+ GG+V + S
Sbjct: 567 LVDELHPQAEEAGVHCEVEKTPRPVVARVDRGGMQIALRNLISNAIKYTEEGGRVRVRSY 626
Query: 519 AAPAGDALVV-IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA-GLTVAREL 576
A DA VV ++D G M T H PF SE + N + GL V +++
Sbjct: 627 RAE--DAAVVEVEDTGIGMDADTVEHVFEPFRQA--SEGL---NREYEGTGLGLAVTKQV 679
Query: 577 LESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSD 615
+E + V + + DA GT V L LP A +D
Sbjct: 680 IEKMNGDIEVDT--EEDA-----GTCVRLRLPRAASEAD 711
>gi|398875291|ref|ZP_10630468.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
gi|398207946|gb|EJM94687.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
Length = 462
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|408483142|ref|ZP_11189361.1| putative two-component system sensor kinase [Pseudomonas sp. R81]
Length = 461
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--ARGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTSPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|374299498|ref|YP_005051137.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio africanus str. Walvis Bay]
gi|332552434|gb|EGJ49478.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio africanus str. Walvis Bay]
Length = 462
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
++GD E PLA Q + + ELS L V L QA++NL++ A+ T GG+V
Sbjct: 317 IVGDAVELYAPLAEEQGLALRM-ELSSGLTVRGNRHLLSQAVANLLDNAIKYTPEGGEV- 374
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
+VS L+ + D GP + + LT F
Sbjct: 375 LVSLTKDGNGCLLSVADTGPGVPEAERGKVLTRF 408
>gi|395648298|ref|ZP_10436148.1| putative two-component system sensor kinase [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 461
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E Q + + E L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAHA--RGVALALEADQPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ P A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVTTP---AVLEVEDDGPGI 402
>gi|387906011|ref|YP_006336348.1| Multi-sensor hybrid histidine kinase [Burkholderia sp. KJ006]
gi|387580903|gb|AFJ89617.1| Multi-sensor hybrid histidine kinase [Burkholderia sp. KJ006]
Length = 766
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 113/278 (40%), Gaps = 17/278 (6%)
Query: 319 IRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378
+RG + LS L+L R + D+ +QG R T +E D K ++
Sbjct: 347 VRGDARNCVALS--LTLRETRVQRRRDLRTQRSLQGAR---TARERADTSNRLKDELLAT 401
Query: 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLA 438
L+ N Y E +RS ++ ++ + + + S SL DI + LA
Sbjct: 402 VSHELRTPLNVIYGWVEVLRSA-GDDALQQQAIDAIDRSAH--SLTRMVGDI-LDASSLA 457
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
L+ + + P +V + D A + A +E + + +V+ + LRQ LSN
Sbjct: 458 TGKLRLDAM-PVDVVRLFADATSAFQTAASAAGIALEFDCTASACVVSGDAERLRQMLSN 516
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE-NM 557
L+ AL T GG V V+ A A++ + D G + P+ ++F +
Sbjct: 517 LVSNALKFTPAGGAVT-VTLTHDAAHAVLAVGDTGQGI-----ASEFIPYVFDMFRRADG 570
Query: 558 VEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ GL++ R + E +G VRV S + A
Sbjct: 571 SPASPRRGLGLGLSIVRHIAELHGGEVRVDSAGRNRGA 608
>gi|322418457|ref|YP_004197680.1| integral membrane sensor signal transduction histidine kinase
[Geobacter sp. M18]
gi|320124844|gb|ADW12404.1| integral membrane sensor signal transduction histidine kinase
[Geobacter sp. M18]
Length = 369
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R C++++ LG++ + A ++ELS + LVA E LRQA N++ A+ +
Sbjct: 223 RECDINEELGNMVTLLSAQARGSNVRLELSCGALPRLVADPEK-LRQAFMNIMLNAIQAS 281
Query: 508 QVGGKVEIVSAAAP-AGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566
GG+V + ++ P AG + D+G + H PF F+ +
Sbjct: 282 PEGGRVLVATSCDPKAGSVEIRFCDEGVGIAADAIAHIFEPF----FTTKGSGTGL---- 333
Query: 567 VAGLTVARELLESYGCVVRVIS 588
GL + R+++E +G + V S
Sbjct: 334 --GLPITRKIIEGHGGTLEVES 353
>gi|416943646|ref|ZP_11934732.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. TJI49]
gi|325524137|gb|EGD02290.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. TJI49]
Length = 602
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 10/178 (5%)
Query: 413 KLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQR 472
+LQNS SL+ KD+ + + L + P ++ +LG++ + R Q+
Sbjct: 276 RLQNSAS--SLEALVKDLTDYIKLRSTKRLAET--EPIGIAALLGEVLDPFRARIDAQRI 331
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-KVEIVSAAAPAGDAL-VVID 530
V L + + LRQ L+NLIE A+ T+ G V I A APAG L + +
Sbjct: 332 AVTSHVAPYDLAIRSDRKLLRQILTNLIENAVKYTRGGTIAVSIALADAPAGRQLKIAVR 391
Query: 531 DDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
D G + PF + + D + GL V RE++ + V V S
Sbjct: 392 DTGVGIAKQHLSKIFEPFYRANDAAGLSVDGIG----MGLAVVREIVTTLRGHVEVRS 445
>gi|162147060|ref|YP_001601521.1| histidine kinase sensory protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209544122|ref|YP_002276351.1| integral membrane sensor signal transduction histidine kinase
[Gluconacetobacter diazotrophicus PAl 5]
gi|161785637|emb|CAP55208.1| putative histidine kinase sensory protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531799|gb|ACI51736.1| integral membrane sensor signal transduction histidine kinase
[Gluconacetobacter diazotrophicus PAl 5]
Length = 592
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+ ++ +SL V E L Q L NLI A+ + G++ + + A G + + D+G
Sbjct: 460 ISVTAADRSLTVQAVEDRLVQVLRNLIGNAISFSPPDGRITLSAVPAAGGMVDIAVADEG 519
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 593
P + L +SE +N + GL+++R+++E+ +R + TD
Sbjct: 520 PGI----PAAKLNSIFDRFYSERPTTENFGQHSGLGLSISRQIVEALKGTIRAENRVGTD 575
Query: 594 AALGSGGTRVELWLP 608
+ G R + LP
Sbjct: 576 GRV--VGARFVVTLP 588
>gi|221065615|ref|ZP_03541720.1| histidine kinase [Comamonas testosteroni KF-1]
gi|220710638|gb|EED66006.1| histidine kinase [Comamonas testosteroni KF-1]
Length = 452
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
LR+ + NL++ A+ Q GG+V + ++P L+ +DDDGP + + P E
Sbjct: 351 LRELIGNLVDNAIRYGQSGGRVTLSLQSSP---VLLAVDDDGPGIPAQER-----PLVLE 402
Query: 552 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 587
F +D GL + +E+ +G V+R++
Sbjct: 403 RFYRG--QDGSGDGCGLGLPIVKEIAARHGAVLRIL 436
>gi|448484831|ref|ZP_21606248.1| multi-sensor signal transduction histidine kinase [Halorubrum arcis
JCM 13916]
gi|445819586|gb|EMA69426.1| multi-sensor signal transduction histidine kinase [Halorubrum arcis
JCM 13916]
Length = 552
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
+VA + LRQAL NL A+ T G V + A P GD V DDGP
Sbjct: 439 VVAADRSRLRQALENLFGNAV--THAGPDVAVTVGALPDGDGFYVA-DDGP--------- 486
Query: 544 SLTPFGSE-LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTR 602
+ P E +F + D F GL + E+ E++G V + A +GGTR
Sbjct: 487 GIDPADREAVFEAGVTSDPDGTGF--GLKIVGEVAEAHGWTVEL-------AESETGGTR 537
Query: 603 VEL 605
E
Sbjct: 538 FEF 540
>gi|332296827|ref|YP_004438749.1| integral membrane sensor signal transduction histidine kinase
[Treponema brennaborense DSM 12168]
gi|332179930|gb|AEE15618.1| integral membrane sensor signal transduction histidine kinase
[Treponema brennaborense DSM 12168]
Length = 624
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 25/167 (14%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLA---HMQQRQVELSELSQSLLVAVEE 489
L L+ L+Q G + V + + D+ + + A H+ RQ + E ++ + +AV E
Sbjct: 438 LTLSKLEQTGFTLATQQTTVQECVADVLLSQQIAADAKHIAFRQTYVPE-NEPIRIAVNE 496
Query: 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL---------VVIDDDGPDM--HY 538
QAL N++ A+ G V + + PA + +VI+DDG + Y
Sbjct: 497 GLFEQALGNIVNNAVKYCPDGSTVSVSAERIPAQEGTAARRYPAVKIVIEDDGAGIPEEY 556
Query: 539 MTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVR 585
++ F + T GL++AR ++E +G +R
Sbjct: 557 RKRIF------ERFFRVDKGRSRETGGTGLGLSIARHIVELHGGTIR 597
>gi|167578457|ref|ZP_02371331.1| sensor histidine kinase [Burkholderia thailandensis TXDOH]
Length = 442
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELF 553
+AL NLI + + + ++ AG ++ +DDDGP + + PF
Sbjct: 325 RALLNLIRNGMRYAST--TISLRASLGDAGALVLTVDDDGPGIPATDRDRVFEPF----H 378
Query: 554 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ D +T F GLT+ R + ++G VR+ DA L GG R + LP+
Sbjct: 379 RLDSSRDRLTGGFGLGLTIVRRVALAHGGDVRL-----DDAPL--GGARFVITLPA 427
>gi|410864756|ref|YP_006979367.1| Integral membrane sensor signal transduction histidine kinase
[Propionibacterium acidipropionici ATCC 4875]
gi|410821397|gb|AFV88012.1| Integral membrane sensor signal transduction histidine kinase
[Propionibacterium acidipropionici ATCC 4875]
Length = 369
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS--LLVAVEEPALRQALSNLIEGALM 505
+P V+ ++ +++RP H + + +++++ L V V+E L Q L NL+ AL
Sbjct: 215 QPHQVAGLIATSVDSIRPRYHDKGVAL-ITDVTTDIDLTVDVDETRLGQVLGNLLTNALR 273
Query: 506 RTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564
T GG V I + PA D + V I D G + H F + + D
Sbjct: 274 HTPPGGSVTITT--RPASDEVAVTITDTGEGLLASQLPHVFERF----YRGDTARDRDRS 327
Query: 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612
GLT+++ +++++G + S + G G T E+ LP P
Sbjct: 328 GSGIGLTISKAIIDAHGGTITAHSDGQ-----GQGAT-FEILLPPSRP 369
>gi|398941905|ref|ZP_10669998.1| signal transduction histidine kinase [Pseudomonas sp. GM41(2012)]
gi|398161270|gb|EJM49506.1| signal transduction histidine kinase [Pseudomonas sp. GM41(2012)]
Length = 461
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|393771416|ref|ZP_10359888.1| periplasmic sensor signal transduction histidine kinase
[Novosphingobium sp. Rr 2-17]
gi|392723180|gb|EIZ80573.1| periplasmic sensor signal transduction histidine kinase
[Novosphingobium sp. Rr 2-17]
Length = 519
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM------ 536
L+V + P L + L NLI+ A+ ++ GG +E V+ A ++ + D GP +
Sbjct: 400 LVVPGDAPRLERVLQNLIDNAVSFSKEGGAIE-VTLAREGKRVVIAVADHGPGVPEGARE 458
Query: 537 HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLES-YGCVVRVISPWKTDAA 595
+ HSL P E + + GL +AR + E+ +G +V TD
Sbjct: 459 RIFERFHSLRPAREEFGKHSGL----------GLGIARTIAEAHFGTLV------TTDRT 502
Query: 596 LGSGGTRVELWLPS 609
G+ G R L LP+
Sbjct: 503 DGAPGARFVLSLPA 516
>gi|354582618|ref|ZP_09001519.1| multi-sensor signal transduction histidine kinase [Paenibacillus
lactis 154]
gi|353198910|gb|EHB64376.1| multi-sensor signal transduction histidine kinase [Paenibacillus
lactis 154]
Length = 476
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+R + ++ ++ A Q+ ++LS S +L + +E L Q L+NL++ A
Sbjct: 316 LRQVDAGELCERVYRKFSVRAKEQEIDLQLSLHSDLILESADEDKLEQVLTNLLDNAFRH 375
Query: 507 TQVGGKVEIVS--AAAPAGDAL-VVIDDDG 533
T G +V+I + AP GDAL V++ D G
Sbjct: 376 TPSGKQVKIQAHRVKAPKGDALQVIVSDQG 405
>gi|303247119|ref|ZP_07333394.1| signal transduction histidine kinase, nitrogen specific, NtrB
[Desulfovibrio fructosovorans JJ]
gi|302491545|gb|EFL51430.1| signal transduction histidine kinase, nitrogen specific, NtrB
[Desulfovibrio fructosovorans JJ]
Length = 611
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 54/185 (29%)
Query: 455 VLGDLFEAVRPLAHMQQRQVELSEL-----------------SQSLLVAVEEPA------ 491
V+ +L E RP + +++R V LSEL S + AVE P
Sbjct: 440 VISELIEFARP-SDIKRRPVRLSELASHAARLTLPDATARGVSVDIAGAVEGPEILADPD 498
Query: 492 -LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ------MHS 544
L QAL NL A+ Q GG + + + AP G A + + D G + M + ++
Sbjct: 499 RLTQALLNLCLNAIQAMQAGGVMTLATGTAPDGRAFLSVADTGGGIDDMERDRIFDPYYT 558
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVE 604
P G+ L GL +A +++ ++G + + AA GGT
Sbjct: 559 TKPHGTGL----------------GLPIAHKIVAAHGGEIVL-------AARPEGGTVAT 595
Query: 605 LWLPS 609
++LPS
Sbjct: 596 VYLPS 600
>gi|88808936|ref|ZP_01124445.1| adaptive-response sensory kinase [Synechococcus sp. WH 7805]
gi|88786878|gb|EAR18036.1| adaptive-response sensory kinase [Synechococcus sp. WH 7805]
Length = 383
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543
LV ++ +RQ L NL+E AL TQ GG + + + V + D GP + Q
Sbjct: 250 LVYADQRRMRQVLLNLLENALKYTQDGGTISVAMLHRTSQWVQVSVSDSGPGIPEQEQ-- 307
Query: 544 SLTPFGSELFSENM---VEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
+F + + T F GL+V R ++E +G + V+S
Sbjct: 308 ------QRIFLDRVRLPQTSGGTSGFGVGLSVCRRIVEVHGGRIWVVS 349
>gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
Length = 1111
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N++D + + + P A + ++ L V+E LR AL NLI AL T+
Sbjct: 956 PLNLADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEGGLRIALQNLISNALKYTE 1015
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG V V A D + ++D G M PF E SE T+
Sbjct: 1016 EGGTVR-VRAGRRGDDVALEVEDTGVGMDPDHVPELFEPFRQE--SEGT---GRTYEGTG 1069
Query: 569 -GLTVARELLESYGCVVRV 586
GL V ++ +E G + V
Sbjct: 1070 LGLAVTKQAIEQMGGTIAV 1088
>gi|398839721|ref|ZP_10596966.1| PAS domain S-box [Pseudomonas sp. GM102]
gi|398112351|gb|EJM02214.1| PAS domain S-box [Pseudomonas sp. GM102]
Length = 1378
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+++ VL D+ V L VEL S+ L+V + L Q + NL+ AL T
Sbjct: 1087 VDLASVLRDIHTVV--LNDRHSTTVELQVPSEPLMVCADPTRLEQIIWNLVNNALKFTPP 1144
Query: 510 GGKVEIVSAAAPAGD-ALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
G V+++ A AGD A + + D+G + H FG +E ++
Sbjct: 1145 NGHVQLI--AQRAGDMARLDVKDNGIGIAAEHLEHVFDLFGQ---AETQHANHQREGLGI 1199
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP---------SPAPLSDLNGK 619
GL++ R+L E+ V V SP +G G T ++LP + A + D++G+
Sbjct: 1200 GLSLVRQLTEAQRGTVEVSSP-----GVGEGCT-FSVYLPLAITEGKTQTEAQIDDVSGR 1253
>gi|386384708|ref|ZP_10070061.1| Histidine kinase [Streptomyces tsukubaensis NRRL18488]
gi|385667848|gb|EIF91238.1| Histidine kinase [Streptomyces tsukubaensis NRRL18488]
Length = 540
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 456 LGDLFEAVRP--LAHMQQRQVEL----SELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
LG+L E R LA + V L ++ +LV + LRQA+ NL+ A+ T
Sbjct: 392 LGELLETCRTAQLARAEPTGVALLVEPADHGPPVLVHADPDRLRQAVGNLVVNAIRATPS 451
Query: 510 GGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVA 568
GG V + + A P A++ + D G + H F + + +T
Sbjct: 452 GGSVTLALEARGP--QAVIRVRDTGHGIPADDLPHLFDRF----WRADAARGRLTGGSGL 505
Query: 569 GLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
GL++ R+++ +G VRV ++A+G+G T
Sbjct: 506 GLSIVRQIVHDHGGTVRV------ESAVGTGTT 532
>gi|73538366|ref|YP_298733.1| response regulator receiver ATP-binding protein [Ralstonia eutropha
JMP134]
gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Ralstonia
eutropha JMP134]
Length = 1152
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I ++ + D E RPLA +R+V L ++S+ + + L Q + NL+ A
Sbjct: 855 IERVDLQAAIRDAIETCRPLAEELEREVTLDVPAESIWLDADPVRLAQVIGNLLSNAYKY 914
Query: 507 TQVGGKVEIVSAAAPAGD-ALVVIDDDG 533
T+ GG V + + P GD L+ + DDG
Sbjct: 915 TEHGGHVWL--SVEPRGDEVLLRVKDDG 940
>gi|343499841|ref|ZP_08737769.1| two-component sensor histidine kinase [Vibrio tubiashii ATCC 19109]
gi|418481612|ref|ZP_13050641.1| two-component sensor histidine kinase [Vibrio tubiashii NCIMB 1337
= ATCC 19106]
gi|342821681|gb|EGU56448.1| two-component sensor histidine kinase [Vibrio tubiashii ATCC 19109]
gi|384570744|gb|EIF01301.1| two-component sensor histidine kinase [Vibrio tubiashii NCIMB 1337
= ATCC 19106]
Length = 463
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIEGALMRT 507
P N+S+V+ ++ +A +++++ L + L V +P L Q L NL++ A+ T
Sbjct: 315 PTNLSEVIHNVVSWYEDVA--EEKEIALEAIVSDELNIVSDPDKLIQVLVNLVDNAIKYT 372
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
GKV I + + G+A++ + D G + + H L L+ + N++ +
Sbjct: 373 NPKGKVTIQAEQSLNGEAVIQVTDTGIGIE--PKYHDLV--FERLYRVDSSRSNIS-GYG 427
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 603
GL+ A ++++ G +R+ S LG G T +
Sbjct: 428 LGLSFAAAIVDNLGGAIRLKSE------LGVGSTFI 457
>gi|406830661|ref|ZP_11090255.1| chemotaxis CheB/CheR fusion protein [Schlesneria paludicola DSM
18645]
Length = 1476
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + V+G+ E+V P + ++VE Q V + LRQ ++NL+ A +
Sbjct: 1174 PVALDQVIGESVESVMPAFDKRGQKVETMLCQQQAWVDGDLVRLRQIVTNLLSNASRYSS 1233
Query: 509 VGGKVEI---VSAAAPAGDALVVID--DDG----PDMHYMTQMHSLTPFGSELFSENMVE 559
G V++ + AA+ + A+ VI D+G PD+H PF + N
Sbjct: 1234 PGKTVKLSLSLEAASRSKPAMAVISVRDEGIGIAPDVHEKI----FEPFAQLRRTHNEAS 1289
Query: 560 DNMTWNFVAGLTVARELLESYGCVVRVIS 588
+ + GL+++R L E +G V VIS
Sbjct: 1290 EGLGL----GLSLSRRLAELHGGTVTVIS 1314
>gi|25026835|ref|NP_736889.1| sensor kinase [Corynebacterium efficiens YS-314]
gi|23492114|dbj|BAC17089.1| putative sensor kinase [Corynebacterium efficiens YS-314]
Length = 398
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 9/149 (6%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
N+++VL AVR + ++L + V +++ Q + NL+ AL T G
Sbjct: 217 NLAEVLSTSLNAVREAYQAKSVDLQLIPVPPRTTVVLDQQRFGQVMGNLLSNALRHTPAG 276
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
G+V + ++ + + D G M H F + + GL
Sbjct: 277 GRVTVRTSQQGQDFVAIEVADTGEGMAEGQIEHIFERF----YRGDTARSRDNGGSGIGL 332
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSG 599
T++R L+E++G + SP LG+G
Sbjct: 333 TISRALIEAHGGTLGATSP-----GLGAG 356
>gi|186470766|ref|YP_001862084.1| histidine kinase [Burkholderia phymatum STM815]
gi|184197075|gb|ACC75038.1| histidine kinase [Burkholderia phymatum STM815]
Length = 524
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551
L Q NL++ A+ T GG++EI A G V + D+G + P E
Sbjct: 271 LAQVFGNLLDNAVKYTLDGGRIEI-DVTAEEGLVTVAVSDNGTGI-----APEELPEIFE 324
Query: 552 LFSE-NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
LFS+ N D GL+V R L+ +G VR S A LG GTR+ + LP+
Sbjct: 325 LFSQSNRALDRAQGGLGIGLSVVRSLIGMHGGTVRAES-----AGLGL-GTRIVVTLPT 377
>gi|359769609|ref|ZP_09273366.1| putative two-component histidine kinase [Gordonia
polyisoprenivorans NBRC 16320]
gi|359312953|dbj|GAB26199.1| putative two-component histidine kinase [Gordonia
polyisoprenivorans NBRC 16320]
Length = 386
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V V+ + Q L NL++ AL T GG V + S P G + + D G + H
Sbjct: 262 VTVDPDRIGQVLGNLLDNALRHTPAGGTVTVASTNTPDGWTAITVTDTGEGVPPEHLAHL 321
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584
F + + GLT+AR L+E++G +
Sbjct: 322 FDRF----YRADTARGRQEGGSGIGLTIARTLVEAHGGTL 357
>gi|343475223|emb|CCD13323.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 202
Score = 38.9 bits (89), Expect = 8.7, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 444 QNGIR-----PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
QNG++ PC++SD+L A+ Q ++ + E S + + L + L N
Sbjct: 48 QNGLQKLSLGPCDISDLLEHARARFAEQANAQNIELLVEEQSPLPRLHADRAQLERVLDN 107
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
L+ AL T GG++ + A +V ++D+G + Y Q PF
Sbjct: 108 LLGNALRHTADGGQIRL-QARRHGERVIVSVEDNGEGIAYGQQGRIFEPF 156
>gi|71732525|gb|EAO34578.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Xylella
fastidiosa subsp. sandyi Ann-1]
Length = 498
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 20/163 (12%)
Query: 455 VLGDLFEAVRPLAHMQQRQ---VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+L DLF+ V+ L + + E + L V L+Q L NL A+ GG
Sbjct: 221 LLADLFQTVQLLLRSSVPDCIALRIEERDEYLSVEANYTELQQCLLNLALNAIHAMPTGG 280
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571
+ +V+ + + D G M T+ +PF F+ + GL
Sbjct: 281 CLTLVAQRHDGDRICISVTDTGIGMSEETRARLFSPF----FTTKSDGTGL------GLI 330
Query: 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 614
+ + ESYG +++V S GTR +L LP+ AP S
Sbjct: 331 SCKRIAESYGGLIQVCSELGV-------GTRFDLILPARAPAS 366
>gi|443316393|ref|ZP_21045838.1| histidine kinase,KaiB domain-containing protein,histidine kinase
[Leptolyngbya sp. PCC 6406]
gi|442783993|gb|ELR93888.1| histidine kinase,KaiB domain-containing protein,histidine kinase
[Leptolyngbya sp. PCC 6406]
Length = 396
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQ 508
N+ +L D+ E++ H Q+ +++ E+ Q L V ++ +++ L NL++ A+ T
Sbjct: 247 TNLRLLLVDVLESMNSKIHHNQQTLDV-EIPQDLPHVYIDASQVQRVLCNLLDNAIKYTP 305
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSEN--MVEDNMTWNF 566
VGG + I + V+I D GP + Q ++F E+ + D +
Sbjct: 306 VGGHISICALHRTTQKVQVIISDTGPGIPTENQ--------EKIFEESFRLQRDEAKDGY 357
Query: 567 VAGLTVARELLES-YGCV 583
GL + R +L + YG +
Sbjct: 358 GLGLALCRRILRAHYGRI 375
>gi|431928955|ref|YP_007241989.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
gi|431827242|gb|AGA88359.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
Length = 465
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 14/110 (12%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD-ALVVIDD 531
QV++ +L++S LV +E+ AL + L NL+E A R +G +I +A P GD L++++D
Sbjct: 347 QVDM-QLAESCLVPMEQGALMELLGNLLENA-YRLCLG---QIRISALPDGDNLLLLVED 401
Query: 532 DGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 581
DGP + + Q + G L D GL V +++L+SYG
Sbjct: 402 DGPGVP-VDQRARIIRRGERL-------DGQHPGQGIGLAVVKDILDSYG 443
>gi|395788191|ref|ZP_10467766.1| hypothetical protein ME7_01101 [Bartonella birtlesii LL-WM9]
gi|395409524|gb|EJF76112.1| hypothetical protein ME7_01101 [Bartonella birtlesii LL-WM9]
Length = 595
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVV-IDDDGPD 535
++ LV E L Q +SNLIE A R+ + GK+ I + G AL++ I+D+GP
Sbjct: 468 GKAYLVLGHELRLGQVMSNLIENA--RSFIPHESGKICITMKSH--GSALILTIEDNGPG 523
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595
+ + ++ +++ ED+ N GL+++R+++E++ ++ + + +
Sbjct: 524 I----RSENIERIFERFYTDRPNEDSFGQNSGLGLSISRQIIEAHNGTIKAENVFDPELG 579
Query: 596 LGSGGTRVELWLP 608
G R + LP
Sbjct: 580 NSKTGARFIIMLP 592
>gi|430747950|ref|YP_007207079.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019670|gb|AGA31384.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 998
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+ S VL EAVRP + +++ +S + L V + L Q ++NL+ A T G
Sbjct: 699 DASIVLDQAVEAVRPTIEQRGQKLTISASREPLPVHADPLRLEQIITNLLTNAAKYTPEG 758
Query: 511 GKVEIVSAAAPAGDALVV-IDDDGPDM--HYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567
G++ + AAA + +V+ + D+G + + QM L G + +
Sbjct: 759 GRIAV--AAARLDETIVLSVKDNGVGISPERIPQMFELFTQGDRTLARS------EGGLG 810
Query: 568 AGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPAP 612
GLT+ + L+E +G V T A+ G G G+ + LP+ +P
Sbjct: 811 IGLTIVKTLVEMHGGTV-------TAASNGPGQGSTFRVTLPAASP 849
>gi|323360122|ref|YP_004226518.1| signal transduction histidine kinase [Microbacterium testaceum
StLB037]
gi|323276493|dbj|BAJ76638.1| signal transduction histidine kinase [Microbacterium testaceum
StLB037]
Length = 539
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEI---VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
LRQ + NLI A+ GG V + VS A + + DDGP + Q F
Sbjct: 428 LRQVVDNLISNAIKYNVRGGTVTVAVDVSETA----VQIAVADDGPGISRTEQGRVFDRF 483
Query: 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
F + V ++ T GL ++R+++ ++G + V S ALG+G T
Sbjct: 484 ----FRGDAVRNSSTHGSGLGLAISRDIVRAHGGEITVSS------ALGTGAT 526
>gi|260776874|ref|ZP_05885768.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
gi|260606540|gb|EEX32814.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
Length = 499
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
C V + + +L+E V M+++Q+ L+ L L V + L Q L NLI+ A +
Sbjct: 354 CTVINSVHELYEPV-----MEEKQLNLTLNLVSDLQVMANDELLFQVLCNLIDNAAKFSP 408
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE 555
+GG +EI + A L + D G + SLT G + F +
Sbjct: 409 IGGAIEINTYADNDHILLTIADQGGG-----VEAQSLTKLGQKFFRQ 450
>gi|340777144|ref|ZP_08697087.1| integral membrane sensor signal transduction histidine kinase
[Acetobacter aceti NBRC 14818]
Length = 457
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
+EL + +++ V+ LRQ +SN+++ AL+ T G + VS AG AL+ + D+GP
Sbjct: 331 AELVRHIMIHVDVVLLRQLVSNILDNALLHTPAGTSI-TVSVRKTAGRALLCVADNGP 387
>gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein
[Hoeflea phototrophica DFL-43]
gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein
[Hoeflea phototrophica DFL-43]
Length = 1325
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQ 508
+++D L + ++P+A+ QR + + LS+S+ V ++ +++Q NL+ A+ T
Sbjct: 1171 VSLNDHLAESVSLLQPMAN-SQRVIIRTSLSESVPDVVADQRSVKQIALNLLSNAIRYTP 1229
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
GG++ + ++ P+G+ ++ I D G M+ ++ PFG
Sbjct: 1230 SGGQIVVSTSYEPSGNVVIRIRDTGIGMNRKELEQAMKPFG 1270
>gi|431795241|ref|YP_007222146.1| signal transduction histidine kinase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785467|gb|AGA70750.1| signal transduction histidine kinase [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 564
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALS 497
A K+ + P ++ DV+ + + PL ++++ + S L S + +E +LR+ +
Sbjct: 393 AGRKELVLEPIDLVDVINAVESVIEPL--IEKKGISFSSLVSSDVPVIEGDRESLRRIVE 450
Query: 498 NLIEGALMRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSEN 556
NL+ A+ T GGK+E+ V+ + L+ + D+G + P+ + F +
Sbjct: 451 NLVSNAIKFTPTGGKIEVRVNYDLDKNEVLINVQDNGIGIR-----KEDLPYIFDKFVQG 505
Query: 557 MVEDNMTWNFVA-GLTVARELLESYGCVVRVIS 588
+ ++ GL +A+EL E +G ++V+S
Sbjct: 506 DSSIHRQYSGSGLGLALAKELAELHGGWIKVVS 538
>gi|373460551|ref|ZP_09552302.1| hypothetical protein HMPREF9944_00566 [Prevotella maculosa OT 289]
gi|371955169|gb|EHO72973.1| hypothetical protein HMPREF9944_00566 [Prevotella maculosa OT 289]
Length = 1335
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 479 LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG---PD 535
L S L+ ++ L + ++NL+ A+ T GG + +VS AG A +++ D G PD
Sbjct: 928 LEDSFLMFLDRDKLEKIMNNLLSNAMKFTPKGGTI-VVSLDVAAGKATIMVQDSGKGIPD 986
Query: 536 MHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE-SYGCVV 584
+++ ++ +L +N + + W GL AR+L E +G +V
Sbjct: 987 ----SELENIFQRYYQL--DNQTKGKLNWGTGIGLYYARKLAELHHGTLV 1030
>gi|398977251|ref|ZP_10687008.1| signal transduction histidine kinase [Pseudomonas sp. GM25]
gi|398138493|gb|EJM27514.1| signal transduction histidine kinase [Pseudomonas sp. GM25]
Length = 928
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV---IDDDGPDMHYMTQMHSLTPF 548
+RQ L+NL+ A+ T G V V A A AGD L V + D GP + + Q+ PF
Sbjct: 563 IRQILNNLLNNAVKFTDSGQVVLRVRAGAAAGDRLEVCWQVSDTGPGITHEDQVFLFEPF 622
Query: 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 601
+ N+V GL++ + L +RV+S A LGS T
Sbjct: 623 YQTGSATNVVAGTGL-----GLSICQRLALLMNGNIRVVSA----AGLGSSFT 666
>gi|340358943|ref|ZP_08681443.1| sensor histidine kinase [Actinomyces sp. oral taxon 448 str. F0400]
gi|339885413|gb|EGQ75132.1| sensor histidine kinase [Actinomyces sp. oral taxon 448 str. F0400]
Length = 293
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 458 DLFEAVRPLAHMQQRQV----ELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
+L VR L +R V L E + + + LRQA++N + A+ +
Sbjct: 120 ELRRLVRTLIQEMRRTVAAPMRLQEHGAPIRMVADRRLLRQAIANTVTNAVRHAGEHATI 179
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 573
I S ++ AL+ + D+G M + TPF S+N +E ++ G+ V
Sbjct: 180 TI-SVSSEEDTALITVADNGRGMTRAQREALFTPF----RSQNSLEAPVSRGVGLGMVVT 234
Query: 574 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608
+++L +G V V S L S GT V L LP
Sbjct: 235 KQILTLHGGSVLVDS-------LASRGTSVYLTLP 262
>gi|444912071|ref|ZP_21232237.1| hypothetical protein D187_03990 [Cystobacter fuscus DSM 2262]
gi|444717293|gb|ELW58126.1| hypothetical protein D187_03990 [Cystobacter fuscus DSM 2262]
Length = 493
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ ++G RP+A Q Q+E + +LV ++ + QA+SN+I A+
Sbjct: 336 PVDLNALVGRCIGRHRPIARQQGVQLEHAVPEPPVLVLGDDTLIEQAVSNVIYNAVRYNA 395
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG V +V P + + DDGP +
Sbjct: 396 RGGHVAVVLEREPGATFRLRVLDDGPGI 423
>gi|256393252|ref|YP_003114816.1| histidine kinase [Catenulispora acidiphila DSM 44928]
gi|256359478|gb|ACU72975.1| histidine kinase [Catenulispora acidiphila DSM 44928]
Length = 400
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+++ + ++ EA RP + R + L + L ++ +LR+ +S L++ A+ T
Sbjct: 256 DLATLAAEVIEAERP--RLGSRVLVLHTVGDHLAISGARSSLRRMISTLVDNAISHTGPT 313
Query: 511 GKVEIVSAAAPAGDALVVID--DDGPDMHYMTQMHSLTPFGSELFSENMVEDN--MTWNF 566
G++EI + PAG A+V ++ DDG P + E + +F
Sbjct: 314 GRIEI--SLRPAGRAIVELEVTDDGT---------GFDPADRDRIFERFAQSGSPAAHHF 362
Query: 567 VAGLTVARELLESYGCVVRVIS 588
GL +ARE+ +G +R +
Sbjct: 363 GLGLALAREIATDHGGTIRAVG 384
>gi|56479486|ref|YP_161075.1| two-component sensor histidine kinase [Aromatoleum aromaticum EbN1]
gi|56315529|emb|CAI10174.1| Two-component sensor histidine kinase [Aromatoleum aromaticum EbN1]
Length = 456
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVE----EPALR-------QALSNLIEGALMRTQVG 510
AV PL R ++ + L +A+E +PA R + L NL++ A +
Sbjct: 315 AVLPLVESLVRVMKRLHAERDLEIAIEACAGDPAFRGEEQDFQEMLGNLVDNACKWAR-- 372
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
+VEI A ++V++DDGP + P +F + D T GL
Sbjct: 373 HRVEI-RVAVERHQLVIVVEDDGPGLA--------APERESVFGRGVRADERTPGSGLGL 423
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609
+ R+L + YG VR+ D AL +GG RV L LP+
Sbjct: 424 AIVRDLAQLYGGDVRL------DPAL-AGGLRVVLTLPA 455
>gi|71906820|ref|YP_284407.1| sensor histidine kinase [Dechloromonas aromatica RCB]
gi|71846441|gb|AAZ45937.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
region:Histidine kinase A, N-terminal [Dechloromonas
aromatica RCB]
Length = 469
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQ--RQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
RP + LG L E++ Q R ++L ++S +V+ E LR+ LSNLI+ AL
Sbjct: 312 RPVD----LGKLLESIASGWFDQALARNIDLGFEAESAVVSGSEWMLREMLSNLIDNALR 367
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T GG V + S A G + ++D+GP +
Sbjct: 368 YTPDGGTVTVRSGLAD-GRPFIEVEDNGPGI 397
>gi|406574938|ref|ZP_11050653.1| putative two-component system sensor kinase [Janibacter hoylei
PVAS-1]
gi|404555635|gb|EKA61122.1| putative two-component system sensor kinase [Janibacter hoylei
PVAS-1]
Length = 864
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 32/170 (18%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQ--SLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
+GDL + +Q R V L + L+V + L Q +NL++ A+ + GG V
Sbjct: 190 VGDLLDDAIGETTLQGRDVALVADVEPGDLVVTGDRARLAQVTANLLDNAVRHSPSGGTV 249
Query: 514 EIVSAAAPAGDAL-VVIDDDGPDMHYMTQMHSLTPFGSE-LFSENMVEDNMTWNFVAGLT 571
+ + A AGDA + + DDGP LTP +E LF ++ GL
Sbjct: 250 TLTARA--AGDAWTLTVADDGP---------GLTPERAERLFHRFGPGEDEGGGTGLGLA 298
Query: 572 VARELLESYGCVVRVISPWKTDAALGS-GGTRVELWL-------PSPAPL 613
+A + +G +R ALG+ G R+EL L PSPAPL
Sbjct: 299 IAAWVASMHGGTIR---------ALGADAGARLELHLPLTPPAFPSPAPL 339
>gi|259506102|ref|ZP_05749004.1| two component system sensor kinase TcsS4 [Corynebacterium efficiens
YS-314]
gi|259166318|gb|EEW50872.1| two component system sensor kinase TcsS4 [Corynebacterium efficiens
YS-314]
Length = 391
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 9/149 (6%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
N+++VL AVR + ++L + V +++ Q + NL+ AL T G
Sbjct: 210 NLAEVLSTSLNAVREAYQAKSVDLQLIPVPPRTTVVLDQQRFGQVMGNLLSNALRHTPAG 269
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570
G+V + ++ + + D G M H F + + GL
Sbjct: 270 GRVTVRTSQQGQDFVAIEVADTGEGMAEGQIEHIFERF----YRGDTARSRDNGGSGIGL 325
Query: 571 TVARELLESYGCVVRVISPWKTDAALGSG 599
T++R L+E++G + SP LG+G
Sbjct: 326 TISRALIEAHGGTLGATSP-----GLGAG 349
>gi|157369750|ref|YP_001477739.1| integral membrane sensor signal transduction histidine kinase
[Serratia proteamaculans 568]
gi|157321514|gb|ABV40611.1| integral membrane sensor signal transduction histidine kinase
[Serratia proteamaculans 568]
Length = 488
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
P ++S+++ D+F+ A +Q+++ L++++ + LV + + + L+NL++ A+ T
Sbjct: 342 PFSLSELVQDVFQKFELAAEARQQRL-LADITPGIPLVFADVSMIERVLTNLLDNAIRHT 400
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG++E V AG LV ++D GP +
Sbjct: 401 PQGGEIE-VRLWQQAGKVLVQVNDSGPGI 428
>gi|333994665|ref|YP_004527278.1| sensor protein GacS [Treponema azotonutricium ZAS-9]
gi|333734676|gb|AEF80625.1| sensor protein GacS [Treponema azotonutricium ZAS-9]
Length = 516
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQ 508
C++S VL L E ++++ L+ S L+ +E L+QAL+N++ A+ T
Sbjct: 192 CSLSSVLKSLAELTSSYTEVKKQNFTLNTASDLPDLILADEAGLKQALTNILGNAVKFTP 251
Query: 509 VGGKVEIVSAAAPAGDALVV---IDDDGPDMHYMTQMHSLTPF--GSELFSENMVEDNMT 563
GG + +A D +++ I D G + TPF G+ S
Sbjct: 252 EGGSINFSVSADKQNDTVMLCFEIKDTGIGITDELMSRLFTPFEQGNNGISRTY------ 305
Query: 564 WNFVAGLTVARELLESYGCVVRVIS 588
+ GL +++ ++E G +RV S
Sbjct: 306 YGVGLGLPISKRIIEKMGGEIRVES 330
>gi|168704576|ref|ZP_02736853.1| periplasmic sensor signal transduction histidine kinase [Gemmata
obscuriglobus UQM 2246]
Length = 482
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 478 ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
E +L VA P LR+ + NLI+ AL + G V +V A A ++ ++D GP +
Sbjct: 351 EPRAALRVAAHPPLLRELVGNLIDNALKYSPPGTPV-VVRAFAEGASTVIAVEDRGPGID 409
Query: 538 YMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALG 597
H PF + + + GL V L ++G RV++ + D
Sbjct: 410 AADLPHVFEPFFRSGRATALPGSGL------GLAVVARLAGAFGG--RVVAENRPD---- 457
Query: 598 SGGTRVELWLPS 609
GG R + LP+
Sbjct: 458 -GGARFRVALPA 468
>gi|148557692|ref|YP_001265274.1| integral membrane sensor signal transduction histidine kinase
[Sphingomonas wittichii RW1]
gi|148502882|gb|ABQ71136.1| integral membrane sensor signal transduction histidine kinase
[Sphingomonas wittichii RW1]
Length = 449
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A A L + ++S ++ D+ E PLA ++ +++ + V L QAL+
Sbjct: 295 AEAGLGRESFVDLDLSAMVEDMVEVYGPLAEDNGFEI-VADAPPGITGHVHRELLGQALA 353
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFG 549
NLI+ A+ G++ + + PAGD ++ + DDGP + + +L FG
Sbjct: 354 NLIDNAMKYG--AGRIVVAARRTPAGDTVISVGDDGPGIPEAQRPEALRRFG 403
>gi|115376700|ref|ZP_01463928.1| histidine kinase, putative [Stigmatella aurantiaca DW4/3-1]
gi|115366317|gb|EAU65324.1| histidine kinase, putative [Stigmatella aurantiaca DW4/3-1]
Length = 571
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 46/194 (23%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL------------- 484
A+ L++ IR + D++ DL + VRP ++ R V L +L++ +
Sbjct: 394 AVTMLEEEAIR---LEDIVRDLLDVVRPF-ELRPRLVHLGDLARHTVTLLQPVAEATQAH 449
Query: 485 VAVEEPA-----------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
V+VEE A ++ ALSNL+ AL + GG V +V A A G + + I+D G
Sbjct: 450 VSVEEEAELPPLQADETLMQLALSNLVRYALRSSPPGGTVRMVLARADPGFS-IAIEDQG 508
Query: 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 593
+ + PF F+ + GL V R ++ ++G ++
Sbjct: 509 ASLTHTDTQRFFEPF----FTSRNNGAGL------GLAVVRRVVLAHGGEIKA------- 551
Query: 594 AALGSGGTRVELWL 607
+ GG R E+ L
Sbjct: 552 SERPGGGARFEILL 565
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,233,342,591
Number of Sequences: 23463169
Number of extensions: 370091767
Number of successful extensions: 1173300
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 1541
Number of HSP's that attempted gapping in prelim test: 1172232
Number of HSP's gapped (non-prelim): 2132
length of query: 623
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 474
effective length of database: 8,863,183,186
effective search space: 4201148830164
effective search space used: 4201148830164
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)