BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006963
(623 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0V0I4|PAN3_PHANO PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAN3 PE=3 SV=2
Length = 669
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 489 EPALR--QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH--S 544
EPA+R QA + G+++ E + A +L+++ D P+ + H
Sbjct: 308 EPAIRSAQAWKRIFNGSIVTIH-----EAFTTRAFGDSSLIIVTDYHPNSKSLADEHFKP 362
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 592
+ F + + V +++ W ++ + A + + G R+ISP KT
Sbjct: 363 MQRFNGRQATSSHVPEHVLWGYIVQIASALKAIHGSGLAARLISPSKT 410
>sp|O31671|KIND_BACSU Sporulation kinase D OS=Bacillus subtilis (strain 168) GN=kinD PE=1
SV=1
Length = 506
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQV 509
++ D++G++ + ++ +VEL L+ Q LLV + ++Q + N+ + L
Sbjct: 362 SLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLVKCTKDHIKQVILNVAKNGLESMPE 421
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG 569
GGK+ I S A A++ + D+G + H PF + ++ T G
Sbjct: 422 GGKLTI-SLGALDKKAIIKVVDNGEGISQEMLDHIFLPFVTS-------KEKGTG---LG 470
Query: 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611
L V + ++ YG + + S + GT V + LP A
Sbjct: 471 LVVCKRIVLMYGGSIHIESEVRR-------GTEVTITLPVSA 505
>sp|Q8FK37|CUSS_ECOL6 Sensor kinase CusS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=cusS PE=3 SV=1
Length = 480
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
VEL + VA + LR+ALSNL+ AL T G E + D LV + +
Sbjct: 357 GVELRFVGDECQVAGDPLMLRRALSNLLSNALRYTPTG---ETIVVRCQTVDHLVQVTVE 413
Query: 533 GP 534
P
Sbjct: 414 NP 415
>sp|P45608|PHOR_KLEPN Phosphate regulon sensor protein PhoR OS=Klebsiella pneumoniae
GN=phoR PE=3 SV=1
Length = 431
Score = 36.2 bits (82), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q + + + L V E LR A+SNL+ A+ T G ++ + P G AL +
Sbjct: 296 QEKQTLIFTVDEQLKVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|P77485|CUSS_ECOLI Sensor kinase CusS OS=Escherichia coli (strain K12) GN=cusS PE=1
SV=1
Length = 480
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
VEL + VA + LR+ALSNL+ AL T G +
Sbjct: 357 GVELRFVGDKCQVAGDPLMLRRALSNLLSNALRYTPTGETI 397
>sp|Q8XBY4|CUSS_ECO57 Sensor kinase CusS OS=Escherichia coli O157:H7 GN=cusS PE=3 SV=1
Length = 482
Score = 35.8 bits (81), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
VEL + VA + LR+ALSNL+ AL T P G+A+VV
Sbjct: 357 GVELQFVGDECQVAGDPLMLRRALSNLLSNALRYT-------------PPGEAIVV 399
>sp|P08400|PHOR_ECOLI Phosphate regulon sensor protein PhoR OS=Escherichia coli (strain
K12) GN=phoR PE=1 SV=1
Length = 431
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q E+ L V+ E LR A+SNL+ A+ T G + + P G A +
Sbjct: 296 QKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|P45609|PHOR_SHIDY Phosphate regulon sensor protein PhoR OS=Shigella dysenteriae
GN=phoR PE=3 SV=1
Length = 431
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q E+ +L V+ E LR A+SNL+ A+ T G + + P G A +
Sbjct: 296 QKKQTFTFEIDNALKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|Q7V6P7|SASA_PROMM Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain MIT 9313) GN=sasA PE=3 SV=1
Length = 370
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V ++ +RQ L NL+E AL T+ GG+V + + V I D+GP + Q
Sbjct: 251 VFADQRRMRQVLLNLLENALKFTEDGGEVSLTMLHRTSHWVQVSICDNGPGIPEDEQ--- 307
Query: 545 LTPFGSELFSENMVEDNM--------TWNFVAGLTVARELLESYGCVVRVIS 588
E + D + T F GL+V R ++E +G + V+S
Sbjct: 308 ----------ERIFLDRVRLPQTSVSTSGFGVGLSVCRRIVEVHGGKIWVVS 349
>sp|Q7BWI3|SASA_PROMA Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=sasA PE=3 SV=1
Length = 381
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V ++ ++Q L NLIE AL + G VEI + + D GP + Q
Sbjct: 253 VFADQSRMKQVLLNLIENALKFSNDGDTVEITMLHRTNQWVQISVSDKGPGIPEEEQQR- 311
Query: 545 LTPFGSELFSENM---VEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
+F + + N T F GL+V R ++E +G + V+S
Sbjct: 312 -------IFLDRVRLPQTSNETSGFGIGLSVCRRIVEVHGGKIWVVS 351
>sp|A2C884|SASA_PROM3 Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain MIT 9303) GN=sasA PE=3 SV=1
Length = 370
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V ++ +RQ L NL+E AL T+ GG+V + + V I D+GP + Q
Sbjct: 251 VFADQRRMRQVLLNLLENALKFTEDGGQVSLSMLHRTSQWVQVSICDNGPGIPEDEQ--- 307
Query: 545 LTPFGSELFSENM---VEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
+F + + T F GL+V R ++E +G + V+S
Sbjct: 308 -----ERIFLDRVRLPQTSVTTSGFGVGLSVCRRIVEVHGGKIWVVS 349
>sp|Q7U871|SASA_SYNPX Adaptive-response sensory-kinase SasA OS=Synechococcus sp. (strain
WH8102) GN=sasA PE=3 SV=1
Length = 383
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V ++ +RQ L NL+E AL T GG + + + V + D GP + Q
Sbjct: 251 VFADQRRMRQVLLNLLENALKYTGNGGHITLTMLHRTSQRVEVSVCDSGPGIPTEEQ--- 307
Query: 545 LTPFGSELFSENM---VEDNMTWNFVAGLTVARELLESYGCVVRVIS 588
+F + + + T F GL+V R ++E +G + V+S
Sbjct: 308 -----QRIFLDRVRLPQTSDRTTGFGVGLSVCRRIVEVHGGRIWVVS 349
>sp|A6L078|RSMH_BACV8 Ribosomal RNA small subunit methyltransferase H OS=Bacteroides
vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
GN=rsmH PE=3 SV=1
Length = 304
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 436 PLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA 495
LA A +K G++ +GD E ++PL ++ + EL+++ Q+L + V + +A
Sbjct: 162 KLASAIVKARGVKQIVT---IGDFLEVIKPLFGREREKKELAKVFQALRIEVNQEM--EA 216
Query: 496 LSNLIEGALMRTQVGGKVEIVS 517
L ++ A + GG++ +++
Sbjct: 217 LKEMLYAATKALKPGGRLVVIT 238
>sp|P10047|DCTB_RHILE C4-dicarboxylate transport sensor protein DctB OS=Rhizobium
leguminosarum GN=dctB PE=3 SV=1
Length = 622
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 492 LRQALSNLIEGAL--MRTQVG-GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548
L Q L NL++ AL + + G G+VEI ++ AG V + D+GP + + TPF
Sbjct: 520 LEQVLINLLQNALEAVAPKAGEGRVEIRTST-DAGMVTVTVADNGPGIPTEIRKGLFTPF 578
Query: 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTR 602
+ S GL ++++++ YG + D A SGGTR
Sbjct: 579 NTSKES----------GLGLGLVISKDIVGDYGG--------RMDVASDSGGTR 614
>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2
Length = 2701
Score = 33.1 bits (74), Expect = 6.0, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 289 AMAYVMDQKSMLLQQSSWQNNAR---MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYD 345
A+ + K+ LQ+ + + R M L EQ+ S++QT+ + +L ++ + + +
Sbjct: 863 ALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLE 922
Query: 346 IVEDIMVQGDRLRGTLQELQDAVFLTKANI---VRYNEETLKKMNNSAYS---HPESI-- 397
V+ + + D L+ + LQ K++I V N +T +++ N+ S H E+I
Sbjct: 923 EVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINT 982
Query: 398 -RSQLSNNFSR-----ENSG-NKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPC 450
+S++S SR EN+G K + K + +D +D+E A +K N
Sbjct: 983 LKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDK-KQDLEAKNTQTLTADVKDN----- 1036
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
++ E R + + Q + EL ++ +S V E+ L+ L IE
Sbjct: 1037 -------EIIEQQRKIFSLIQEKNELQQMLES--VIAEKEQLKTDLKENIE 1078
>sp|Q55630|SASA_SYNY3 Adaptive-response sensory-kinase SasA OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sasA PE=3 SV=1
Length = 383
Score = 32.7 bits (73), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544
V +E +RQ ++NL++ A+ T G + + + V I D+GP + Q
Sbjct: 270 VFADEELIRQVIANLLDNAIKYTPAHGSITVGALHRTTQKVQVSITDNGPGIPNSKQE-- 327
Query: 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLES-YGCV 583
T F + D T + GL++ R+++++ YG +
Sbjct: 328 -TIFEGHF---RLQRDEQTDGYGLGLSLCRKIIQAHYGQI 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,036,235
Number of Sequences: 539616
Number of extensions: 8782758
Number of successful extensions: 27890
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 27870
Number of HSP's gapped (non-prelim): 61
length of query: 623
length of database: 191,569,459
effective HSP length: 124
effective length of query: 499
effective length of database: 124,657,075
effective search space: 62203880425
effective search space used: 62203880425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)