Query 006963
Match_columns 623
No_of_seqs 496 out of 3721
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 16:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 8.4E-38 1.8E-42 348.0 35.4 346 117-612 525-882 (890)
2 COG5002 VicK Signal transducti 100.0 1.2E-34 2.5E-39 295.4 19.9 225 305-613 222-452 (459)
3 PRK09303 adaptive-response sen 100.0 1.3E-32 2.8E-37 297.7 31.1 237 294-611 137-379 (380)
4 PRK10490 sensor protein KdpD; 100.0 1.9E-31 4.1E-36 316.3 39.6 289 195-612 590-885 (895)
5 PRK13837 two-component VirA-li 100.0 1E-30 2.3E-35 309.0 37.2 213 309-611 451-677 (828)
6 PRK10618 phosphotransfer inter 100.0 6.1E-31 1.3E-35 310.2 32.3 236 294-611 436-674 (894)
7 TIGR02916 PEP_his_kin putative 100.0 1E-29 2.2E-34 294.5 39.1 347 112-608 315-679 (679)
8 PRK11006 phoR phosphate regulo 100.0 4.8E-30 1E-34 281.4 27.7 222 308-611 204-425 (430)
9 PRK10841 hybrid sensory kinase 100.0 2E-29 4.4E-34 300.2 32.2 237 293-611 432-669 (924)
10 COG3852 NtrB Signal transducti 100.0 8.9E-30 1.9E-34 256.8 23.7 212 308-611 132-356 (363)
11 COG4191 Signal transduction hi 100.0 5.3E-29 1.2E-33 270.7 29.9 214 309-610 385-602 (603)
12 PRK10364 sensor protein ZraS; 100.0 8E-29 1.7E-33 273.6 32.1 213 309-611 238-450 (457)
13 TIGR02938 nifL_nitrog nitrogen 100.0 1.3E-28 2.9E-33 270.4 32.5 215 308-609 276-494 (494)
14 PRK11091 aerobic respiration c 100.0 2.3E-29 5.1E-34 295.6 28.2 230 302-612 277-508 (779)
15 TIGR02956 TMAO_torS TMAO reduc 100.0 1.4E-28 3E-33 295.0 32.5 228 300-611 456-685 (968)
16 PRK15347 two component system 100.0 1.7E-28 3.7E-33 292.6 31.4 227 299-611 389-616 (921)
17 PRK10755 sensor protein BasS/P 100.0 5.3E-28 1.2E-32 258.1 30.8 227 296-611 125-352 (356)
18 PRK10604 sensor protein RstB; 100.0 2.7E-28 5.9E-33 268.2 29.3 230 293-612 197-426 (433)
19 PRK11466 hybrid sensory histid 100.0 4.6E-28 9.9E-33 289.1 32.0 229 299-611 435-664 (914)
20 PRK10815 sensor protein PhoQ; 100.0 1.9E-27 4.1E-32 265.3 33.0 223 301-612 259-481 (485)
21 PRK11107 hybrid sensory histid 100.0 7.6E-28 1.6E-32 286.8 31.2 228 303-611 288-520 (919)
22 PRK10549 signal transduction h 100.0 8.2E-27 1.8E-31 256.9 32.8 236 294-612 226-461 (466)
23 PRK09835 sensor kinase CusS; P 100.0 1.6E-26 3.4E-31 255.6 32.0 235 293-610 247-481 (482)
24 TIGR01386 cztS_silS_copS heavy 100.0 8.7E-27 1.9E-31 255.1 29.3 231 294-608 227-457 (457)
25 PRK10337 sensor protein QseC; 100.0 7.3E-27 1.6E-31 256.6 28.5 226 295-607 224-449 (449)
26 PRK09959 hybrid sensory histid 100.0 4.7E-27 1E-31 288.0 29.8 232 298-611 702-938 (1197)
27 PRK09467 envZ osmolarity senso 100.0 2.1E-26 4.6E-31 251.6 28.6 220 294-610 215-434 (435)
28 TIGR03785 marine_sort_HK prote 100.0 4.6E-26 1E-30 264.5 32.6 233 294-608 471-703 (703)
29 PRK11073 glnL nitrogen regulat 100.0 2.3E-26 5.1E-31 244.0 27.4 208 308-609 130-347 (348)
30 PRK09470 cpxA two-component se 99.9 1.5E-25 3.2E-30 246.1 31.6 232 293-611 228-459 (461)
31 TIGR02966 phoR_proteo phosphat 99.9 7.4E-26 1.6E-30 235.9 27.8 219 308-607 114-333 (333)
32 COG4251 Bacteriophytochrome (l 99.9 5.5E-26 1.2E-30 246.7 27.2 235 293-614 509-746 (750)
33 PRK11360 sensory histidine kin 99.9 3.2E-25 7E-30 249.3 30.4 214 308-611 390-603 (607)
34 COG5000 NtrY Signal transducti 99.9 2.4E-25 5.3E-30 241.4 23.3 210 309-609 487-708 (712)
35 PRK11100 sensory histidine kin 99.9 2.3E-24 5E-29 236.9 30.4 218 309-610 257-474 (475)
36 PRK13557 histidine kinase; Pro 99.9 3.1E-24 6.7E-29 239.7 29.3 216 308-611 163-396 (540)
37 COG0642 BaeS Signal transducti 99.9 1.5E-23 3.3E-28 215.5 28.3 219 307-612 114-332 (336)
38 PRK13560 hypothetical protein; 99.9 3.2E-23 6.9E-28 242.6 24.4 206 299-611 596-805 (807)
39 PRK11086 sensory histidine kin 99.9 1.5E-21 3.3E-26 218.7 28.7 128 466-611 406-537 (542)
40 PRK15053 dpiB sensor histidine 99.9 4.8E-21 1E-25 216.0 29.8 131 467-612 406-542 (545)
41 PRK11644 sensory histidine kin 99.9 9.5E-21 2E-25 212.0 27.6 191 309-609 303-494 (495)
42 COG4192 Signal transduction hi 99.9 3.3E-20 7.1E-25 195.2 24.4 212 309-611 452-668 (673)
43 PRK10600 nitrate/nitrite senso 99.8 4.6E-18 9.9E-23 193.5 33.7 263 200-617 298-564 (569)
44 COG3290 CitA Signal transducti 99.8 5.6E-18 1.2E-22 184.1 27.9 138 457-611 391-533 (537)
45 PRK13559 hypothetical protein; 99.8 1.4E-18 3E-23 185.8 23.0 185 308-610 170-360 (361)
46 PF02518 HATPase_c: Histidine 99.8 4.8E-19 1E-23 157.9 13.2 110 487-609 1-110 (111)
47 PRK10935 nitrate/nitrite senso 99.8 3.6E-16 7.9E-21 176.8 32.6 132 447-611 429-561 (565)
48 PRK10547 chemotaxis protein Ch 99.7 2.1E-15 4.5E-20 172.6 22.4 147 450-611 343-525 (670)
49 smart00387 HATPase_c Histidine 99.5 1.2E-12 2.5E-17 113.4 14.3 110 487-609 1-110 (111)
50 COG0643 CheA Chemotaxis protei 99.4 1.1E-11 2.4E-16 142.8 23.5 147 449-610 389-574 (716)
51 COG3850 NarQ Signal transducti 99.4 1.4E-10 3.1E-15 126.0 29.2 129 449-611 441-570 (574)
52 PRK04184 DNA topoisomerase VI 99.4 1.5E-12 3.2E-17 144.9 13.2 117 485-610 30-153 (535)
53 COG3920 Signal transduction hi 99.4 3.9E-10 8.4E-15 113.5 27.6 133 448-611 79-217 (221)
54 COG3851 UhpB Signal transducti 99.3 2.4E-10 5.2E-15 118.5 24.1 189 310-609 305-494 (497)
55 cd00075 HATPase_c Histidine ki 99.3 1.8E-11 4E-16 104.2 12.8 102 492-607 1-103 (103)
56 PRK14868 DNA topoisomerase VI 99.3 2.2E-11 4.7E-16 138.3 15.5 103 486-590 41-146 (795)
57 COG4585 Signal transduction hi 99.3 1.6E-09 3.5E-14 116.9 27.0 125 450-609 240-365 (365)
58 TIGR01925 spIIAB anti-sigma F 99.3 5.4E-11 1.2E-15 110.2 12.8 98 488-607 36-136 (137)
59 TIGR01052 top6b DNA topoisomer 99.2 7.8E-11 1.7E-15 129.9 13.6 105 484-590 21-129 (488)
60 PRK03660 anti-sigma F factor; 99.2 3.5E-10 7.6E-15 105.8 13.5 103 488-612 36-141 (146)
61 PRK14867 DNA topoisomerase VI 99.1 2.6E-10 5.7E-15 129.3 12.9 113 489-610 34-150 (659)
62 COG3275 LytS Putative regulato 99.0 1.4E-07 3.1E-12 101.5 26.7 131 447-611 414-553 (557)
63 PRK04069 serine-protein kinase 98.9 2.2E-08 4.7E-13 95.9 13.6 102 488-609 39-143 (161)
64 COG4564 Signal transduction hi 98.9 3.4E-07 7.4E-12 94.4 22.8 131 448-611 318-449 (459)
65 COG2972 Predicted signal trans 98.8 1.1E-06 2.4E-11 97.9 26.1 98 491-611 350-454 (456)
66 TIGR01924 rsbW_low_gc serine-p 98.8 7.1E-08 1.5E-12 92.3 13.5 101 490-610 41-144 (159)
67 PF14501 HATPase_c_5: GHKL dom 98.8 8.8E-08 1.9E-12 84.2 12.5 96 488-608 2-100 (100)
68 KOG0787 Dehydrogenase kinase [ 98.7 2.2E-07 4.9E-12 97.4 14.3 156 447-611 213-382 (414)
69 KOG0519 Sensory transduction h 98.7 5.7E-09 1.2E-13 122.9 2.3 155 447-613 289-492 (786)
70 PF00512 HisKA: His Kinase A ( 98.6 1.5E-07 3.2E-12 76.4 7.7 60 308-367 2-62 (68)
71 PF13581 HATPase_c_2: Histidin 98.3 7.2E-06 1.6E-10 74.5 11.1 93 489-606 29-124 (125)
72 COG1389 DNA topoisomerase VI, 98.1 1.4E-05 3E-10 86.1 9.7 99 489-590 34-137 (538)
73 TIGR00585 mutl DNA mismatch re 98.0 3.6E-05 7.8E-10 81.6 12.0 91 490-589 21-113 (312)
74 COG2172 RsbW Anti-sigma regula 98.0 8.4E-05 1.8E-09 70.2 12.2 87 488-589 37-127 (146)
75 smart00388 HisKA His Kinase A 97.8 7.9E-05 1.7E-09 58.2 7.2 58 309-367 3-60 (66)
76 cd00082 HisKA Histidine Kinase 97.8 0.00014 3.1E-09 56.2 8.0 59 308-366 4-62 (65)
77 PRK00095 mutL DNA mismatch rep 97.3 0.0012 2.6E-08 76.5 11.4 58 491-552 22-79 (617)
78 PF13589 HATPase_c_3: Histidin 97.2 0.0002 4.3E-09 66.7 2.6 101 493-608 4-106 (137)
79 PF13492 GAF_3: GAF domain; PD 96.9 0.017 3.7E-07 51.3 12.3 115 116-292 1-127 (129)
80 TIGR01817 nifA Nif-specific re 96.6 0.039 8.5E-07 62.9 15.4 148 110-310 13-174 (534)
81 PRK05559 DNA topoisomerase IV 96.3 0.0065 1.4E-07 70.5 6.3 86 488-578 34-130 (631)
82 COG0323 MutL DNA mismatch repa 96.0 0.0081 1.8E-07 69.7 5.3 58 491-552 23-80 (638)
83 PF01590 GAF: GAF domain; Int 95.7 0.13 2.9E-06 47.0 11.1 99 116-220 1-127 (154)
84 TIGR01059 gyrB DNA gyrase, B s 95.6 0.022 4.8E-07 66.5 6.9 86 488-578 27-123 (654)
85 PRK05218 heat shock protein 90 95.6 0.035 7.6E-07 64.3 8.3 51 495-548 30-96 (613)
86 PF13185 GAF_2: GAF domain; PD 95.1 0.37 8.1E-06 43.7 12.1 123 114-292 1-147 (148)
87 PRK14083 HSP90 family protein; 94.8 0.034 7.4E-07 64.0 5.1 81 494-576 26-117 (601)
88 PRK05644 gyrB DNA gyrase subun 94.6 0.041 8.8E-07 64.0 5.2 87 488-578 34-130 (638)
89 smart00065 GAF Domain present 94.3 1.2 2.7E-05 38.6 13.2 99 116-220 1-112 (149)
90 TIGR01055 parE_Gneg DNA topois 93.8 0.058 1.2E-06 62.6 4.3 82 493-580 32-125 (625)
91 PRK11061 fused phosphoenolpyru 93.4 0.73 1.6E-05 54.8 12.5 136 110-298 11-160 (748)
92 smart00433 TOP2c Topoisomerase 93.1 0.1 2.2E-06 60.4 4.7 82 492-577 2-93 (594)
93 PRK15429 formate hydrogenlyase 91.9 5.3 0.00011 47.2 17.1 132 111-295 194-344 (686)
94 KOG1979 DNA mismatch repair pr 91.9 0.19 4E-06 56.4 4.6 55 494-552 30-84 (694)
95 PRK14939 gyrB DNA gyrase subun 91.4 0.16 3.5E-06 59.8 3.7 84 490-578 36-130 (756)
96 PTZ00130 heat shock protein 90 90.9 0.34 7.3E-06 57.3 5.7 31 512-543 123-153 (814)
97 PRK05022 anaerobic nitric oxid 90.8 6.3 0.00014 44.8 15.7 145 111-309 13-173 (509)
98 COG1956 GAF domain-containing 90.3 5.4 0.00012 38.1 12.0 22 199-220 113-134 (163)
99 PTZ00272 heat shock protein 83 89.7 0.54 1.2E-05 55.2 6.0 49 496-545 30-92 (701)
100 PLN03237 DNA topoisomerase 2; 89.5 0.51 1.1E-05 58.9 5.8 88 490-580 76-174 (1465)
101 COG5385 Uncharacterized protei 89.4 19 0.00041 34.7 14.8 96 494-608 116-213 (214)
102 PF10090 DUF2328: Uncharacteri 88.3 27 0.00059 34.2 17.9 88 490-588 84-173 (182)
103 COG0326 HtpG Molecular chapero 87.8 0.74 1.6E-05 52.8 5.3 30 512-542 62-91 (623)
104 TIGR01058 parE_Gpos DNA topois 84.9 0.7 1.5E-05 53.9 3.2 87 489-579 32-128 (637)
105 KOG1978 DNA mismatch repair pr 84.1 1 2.2E-05 51.7 4.0 56 492-551 21-76 (672)
106 PTZ00108 DNA topoisomerase 2-l 83.8 1.4 2.9E-05 55.3 5.2 87 491-580 57-157 (1388)
107 COG3605 PtsP Signal transducti 83.7 3.7 8E-05 46.7 8.0 100 115-220 16-128 (756)
108 COG5381 Uncharacterized protei 82.7 6.8 0.00015 36.8 8.0 45 491-537 63-107 (184)
109 COG2203 FhlA FOG: GAF domain [ 80.4 6.9 0.00015 35.1 7.5 52 200-296 115-166 (175)
110 PLN03128 DNA topoisomerase 2; 78.6 3.3 7.1E-05 51.3 5.9 47 491-540 52-101 (1135)
111 KOG1977 DNA mismatch repair pr 75.9 2.8 6.1E-05 48.4 3.9 58 490-552 20-77 (1142)
112 PHA02569 39 DNA topoisomerase 75.1 1.9 4.1E-05 50.0 2.4 44 493-541 51-95 (602)
113 COG0187 GyrB Type IIA topoisom 70.9 0.64 1.4E-05 53.1 -2.5 80 494-579 43-130 (635)
114 PRK15429 formate hydrogenlyase 68.6 53 0.0011 38.9 12.6 48 200-293 115-162 (686)
115 COG3835 CdaR Sugar diacid util 65.9 19 0.00042 38.6 7.3 18 203-220 75-92 (376)
116 PF05651 Diacid_rec: Putative 65.9 40 0.00087 31.4 8.7 19 202-220 72-90 (135)
117 PTZ00109 DNA gyrase subunit b; 63.1 1.4 2.9E-05 52.8 -2.0 49 489-541 127-177 (903)
118 PF14689 SPOB_a: Sensor_kinase 59.8 32 0.0007 27.4 6.0 43 309-356 13-55 (62)
119 PRK13558 bacterio-opsin activa 59.2 27 0.00059 40.7 7.9 47 201-293 390-436 (665)
120 KOG0019 Molecular chaperone (H 41.6 27 0.00058 40.1 3.8 67 511-578 89-162 (656)
121 KOG0020 Endoplasmic reticulum 41.0 38 0.00083 37.9 4.7 45 496-541 100-158 (785)
122 KOG0519 Sensory transduction h 39.5 66 0.0014 38.8 6.9 137 447-587 457-619 (786)
123 PRK04158 transcriptional repre 37.0 3.2E+02 0.0069 28.4 10.4 25 196-220 106-130 (256)
124 PF07536 HWE_HK: HWE histidine 32.1 2.6E+02 0.0056 23.6 7.5 22 315-336 2-23 (83)
125 COG2865 Predicted transcriptio 31.1 92 0.002 35.1 5.9 139 451-611 237-382 (467)
126 PRK11477 carbohydrate diacid t 29.0 2.3E+02 0.0049 30.8 8.5 20 201-220 76-95 (385)
127 PF06018 CodY: CodY GAF-like d 27.4 3.9E+02 0.0085 26.1 8.8 23 198-220 106-128 (177)
128 KOG0355 DNA topoisomerase type 25.0 77 0.0017 37.9 4.0 55 483-541 45-102 (842)
129 PF07492 Trehalase_Ca-bi: Neut 24.6 56 0.0012 22.4 1.7 15 521-535 10-24 (30)
130 PF12282 H_kinase_N: Signal tr 22.4 6.5E+02 0.014 23.5 9.9 20 201-220 105-124 (145)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-38 Score=347.96 Aligned_cols=346 Identities=17% Similarity=0.217 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeeeeccccccCcchhhhhhhhhcccccC
Q 006963 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQV 196 (623)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~l~g~~~~~~~~~~~~~~l~~~~~~~ 196 (623)
-..+...-...+...+ +.+..+|+.+.+. .+ +-+.||..-. ..-.-+.+|.+-.+.. .-.+.++
T Consensus 525 ~~~vl~~~~~qi~~~~--~~~v~i~l~~~~~------~~-~~~~~~~~l~-~~d~aaa~W~~~~~~~------AG~gTdT 588 (890)
T COG2205 525 REDILAAAGQQIASLL--NQRVVILLPDDNG------KL-QPLGNPDGLS-ADDRAAAQWAFENGKP------AGAGTDT 588 (890)
T ss_pred HHHHHHHHHHHHHHHh--CCceEEEEecCCc------cc-ccccCCcccc-HHHHHHhhchhhCCCc------cccCCCC
Confidence 3445555556666666 6667799998332 23 4455665310 0000133333333222 1245568
Q ss_pred CCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccCHH
Q 006963 197 VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSAD 276 (623)
Q Consensus 197 ~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e 276 (623)
+|..+.+++|+...+.++|++.++. . . ++ .+..+
T Consensus 589 lpg~~~~~lPl~~~~~~~gvlgv~~-----------~-~---------~~-------------------------ll~p~ 622 (890)
T COG2205 589 LPGAKYLYLPLKSGGKVLGVLGVEP-----------G-L---------SP-------------------------LLAPE 622 (890)
T ss_pred CCCCceeEeecccCCceEEEEEecC-----------C-C---------Cc-------------------------cCChH
Confidence 9999999999999999999999993 1 0 11 03457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcC--CcchHHHHH
Q 006963 277 QRLNAINICRSLAMAYVMDQKSMLLQQ------SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVE 348 (623)
Q Consensus 277 ~r~~~~~ia~~lalA~~l~q~~~~lqq------~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~--~~~~~~~~e 348 (623)
++..+.+++.++|+|....+-....++ ..+-.+.+++.+|||||||||+|.|.+..|...... .+...+.+.
T Consensus 623 ~~rlL~a~~~q~AlAler~~L~~~~~~a~l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~ 702 (890)
T COG2205 623 QRRLLDAVLTQIALALERVTLAEEAEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLS 702 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHH
Confidence 778888999999888744322222222 222238899999999999999999999999876543 344678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCcc
Q 006963 349 DIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAK 428 (623)
Q Consensus 349 ~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~ 428 (623)
.|..++++|..++.+|.+.-.
T Consensus 703 ~I~ees~~L~rlV~NLLdmTR----------------------------------------------------------- 723 (890)
T COG2205 703 SIREESERLTRLVTNLLDMTR----------------------------------------------------------- 723 (890)
T ss_pred HHHHHHHHHHHHHHHHHhHHH-----------------------------------------------------------
Confidence 999999999999999965321
Q ss_pred ccCCCCCccccccCCCC----CceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHH
Q 006963 429 DIEMPMPPLALAPLKQN----GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504 (623)
Q Consensus 429 ~~~~~~ppL~La~~e~~----~~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAl 504 (623)
++++ +.++..+.+++..++..+.... .+..+.+..+.+...+.+|...|.|||.|||+||+
T Consensus 724 -------------i~sG~~~l~~~~~~veEvVg~Al~r~~k~~--~~~~i~v~~~~dl~li~~D~~LieQVLiNLleNA~ 788 (890)
T COG2205 724 -------------LQSGGVNLKLDWVLVEEVVGEALQRLRKRF--TGHKIVVSVPVDLPLIHVDSPLIEQVLINLLENAL 788 (890)
T ss_pred -------------HhcCCcccccchhhHHHHHHHHHHHhhhhc--CCceEEEecCCCCceEecCHHHHHHHHHHHHHHHH
Confidence 1111 3678899999999999998877 45667777677778999999999999999999999
Q ss_pred hhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEE
Q 006963 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 584 (623)
Q Consensus 505 k~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I 584 (623)
||+|++.+|.|.+. ...+.+.+.|+|+|+|||++++++||++||++.... .+.|+||||+||+.|++.|||+|
T Consensus 789 Kyap~~s~I~I~~~-~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~------~~~G~GLGLsIc~~iv~ahgG~I 861 (890)
T COG2205 789 KYAPPGSEIRINAG-VERENVVFSVIDEGPGIPEGELERIFDKFYRGNKES------ATRGVGLGLAICRGIVEAHGGTI 861 (890)
T ss_pred hhCCCCCeEEEEEE-EecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCC------CCCCccccHHHHHHHHHHcCCeE
Confidence 99999999999998 667889999999999999999999999999975311 14599999999999999999999
Q ss_pred EEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 585 RVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 585 ~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
++.+.. .+|++|.+.||....
T Consensus 862 ~a~~~~-------~gGa~f~~~LP~~~~ 882 (890)
T COG2205 862 SAENNP-------GGGAIFVFTLPVEED 882 (890)
T ss_pred EEEEcC-------CCceEEEEEeecCCC
Confidence 999964 469999999999753
No 2
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-34 Score=295.42 Aligned_cols=225 Identities=16% Similarity=0.201 Sum_probs=187.5
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Q 006963 305 SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS-EISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (623)
Q Consensus 305 ~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~-~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l 383 (623)
.+..++|+++++||||||||++++|.+-|....-.+ +.....+..-+.+.+||-+++++|.+.
T Consensus 222 e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~l---------------- 285 (459)
T COG5002 222 ERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQL---------------- 285 (459)
T ss_pred HHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHH----------------
Confidence 344589999999999999999999999998765443 456778888888999999999999542
Q ss_pred hhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCC----CCceeeeHHHHHHHH
Q 006963 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ----NGIRPCNVSDVLGDL 459 (623)
Q Consensus 384 ~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~----~~~~~v~L~ell~~l 459 (623)
++.+. ...+.+++...+..+
T Consensus 286 --------------------------------------------------------sr~d~~~~qln~e~inft~fl~~i 309 (459)
T COG5002 286 --------------------------------------------------------SRMDNARYQLNKEWINFTAFLNEI 309 (459)
T ss_pred --------------------------------------------------------ccCcchhhhhhHHHHHhHHHHHHH
Confidence 11111 125779999999999
Q ss_pred HHHHHHHhhhcCCe-EEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCCh
Q 006963 460 FEAVRPLAHMQQRQ-VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538 (623)
Q Consensus 460 l~~~~~~a~~~~~~-i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~ 538 (623)
+.++...+.+.... +.-..+..+.+|..|+..+.||+.|+|+||+||+|.||+|++.+. ..+..+.|+|.|.|.|||.
T Consensus 310 i~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~-~~~~~v~iSI~D~G~gIPk 388 (459)
T COG5002 310 INRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVK-QRETWVEISISDQGLGIPK 388 (459)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEe-eeCcEEEEEEccCCCCCCc
Confidence 99998875433322 222246778899999999999999999999999999999999998 5678899999999999999
Q ss_pred hhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCCC
Q 006963 539 MTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 613 (623)
Q Consensus 539 e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~~ 613 (623)
++++++|++||+.+..+.+.- +|+||||+|+|+|++.|||.|+..|.. |+ ||+|.++||.....
T Consensus 389 ~d~~~iFdrfyRvdkARsR~~----gGTGLGLaIakeiV~~hgG~iWA~s~~------gk-gtt~~ftLPy~~~~ 452 (459)
T COG5002 389 EDLEKIFDRFYRVDKARSRKM----GGTGLGLAIAKEIVQAHGGRIWAESEE------GK-GTTFSFTLPYSGEA 452 (459)
T ss_pred hhHHHHHHHHhhhhhhhhhcC----CCCchhHHHHHHHHHHhCCeEEEeccc------CC-ceEEEEEecccCcc
Confidence 999999999999876655443 499999999999999999999999986 65 99999999997643
No 3
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=1.3e-32 Score=297.74 Aligned_cols=237 Identities=17% Similarity=0.152 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCc------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE------ISYDIVEDIMVQGDRLRGTLQELQDA 367 (623)
Q Consensus 294 l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~------~~~~~~e~I~~e~~rL~~ll~~L~~~ 367 (623)
+.++...++++...+.+++++++|||||||++|.+++++|........ ..+++++.+.+..++|..+++++.++
T Consensus 137 l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~ 216 (380)
T PRK09303 137 LRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEV 216 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666778999999999999999999999999985543321 24556777888888888888888553
Q ss_pred HHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCc
Q 006963 368 VFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447 (623)
Q Consensus 368 l~l~~~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~ 447 (623)
...... .+. ...
T Consensus 217 ~~~~~~--------------------------------------------------------------~~~------~~~ 228 (380)
T PRK09303 217 GRTRWE--------------------------------------------------------------ALR------FNP 228 (380)
T ss_pred HHhhcC--------------------------------------------------------------Cce------ecc
Confidence 210000 000 124
Q ss_pred eeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEE
Q 006963 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (623)
Q Consensus 448 ~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I 527 (623)
+++++.+++.+++..+...+..+++.+.+..+.....+.+|+..|.||+.|||+||++|++.++.|.|.+....++.+.|
T Consensus 229 ~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i 308 (380)
T PRK09303 229 QKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQERIRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQV 308 (380)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCeEEeCHHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEE
Confidence 67999999999999999999888888888765555579999999999999999999999999999999876445667999
Q ss_pred EEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 528 VIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 528 ~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
.|.|+|+||+++.++++|+|||+.+... ...|+||||+|||++++.|||+|++.|.+ + +||+|+|+|
T Consensus 309 ~V~D~G~GI~~~~~~~iF~pf~~~~~~~------~~~G~GLGL~i~~~iv~~~gG~i~v~s~~------~-~Gt~f~i~l 375 (380)
T PRK09303 309 SICDTGPGIPEEEQERIFEDRVRLPRDE------GTEGYGIGLSVCRRIVRVHYGQIWVDSEP------G-QGSCFHFTL 375 (380)
T ss_pred EEEEcCCCCCHHHHHHHccCceeCCCCC------CCCcccccHHHHHHHHHHcCCEEEEEecC------C-CccEEEEEE
Confidence 9999999999999999999999875311 23499999999999999999999999976 5 499999999
Q ss_pred cCCC
Q 006963 608 PSPA 611 (623)
Q Consensus 608 P~~~ 611 (623)
|..+
T Consensus 376 P~~~ 379 (380)
T PRK09303 376 PVYR 379 (380)
T ss_pred ecCC
Confidence 9853
No 4
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=1.9e-31 Score=316.34 Aligned_cols=289 Identities=17% Similarity=0.178 Sum_probs=218.9
Q ss_pred cCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccC
Q 006963 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFS 274 (623)
Q Consensus 195 ~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~ 274 (623)
..+|.....++||..++.++|++++.. . .... .|+
T Consensus 590 ~tl~~~~~~~lPl~~~~~~~Gvl~l~~-----------~-----------~~~~-----------------------~~~ 624 (895)
T PRK10490 590 DTLPGVPYQILPLKSAQKTYGLLAVEP-----------G-----------NLRQ-----------------------LMI 624 (895)
T ss_pred CcCCCCceEEEEEEECCEEEEEEEEec-----------C-----------cccc-----------------------cCC
Confidence 356777889999999999999999882 1 0000 145
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCC-cchHHHH
Q 006963 275 ADQRLNAINICRSLAMAYVMDQKS------MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS-EISYDIV 347 (623)
Q Consensus 275 ~e~r~~~~~ia~~lalA~~l~q~~------~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~-~~~~~~~ 347 (623)
.+++..++.++.+++.+....+.. ....+..+.++++++.++|||||||++|.+++++|...+... ....+.+
T Consensus 625 ~~~~~ll~~la~~~a~aler~~l~~~~~~~~l~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~ 704 (895)
T PRK10490 625 PEQQRLLETFTLLIANALERLTLTASEEQARLASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQA 704 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHH
Confidence 567777778888877665321111 111122233478999999999999999999999987655433 2334667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCc
Q 006963 348 EDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPA 427 (623)
Q Consensus 348 e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~ 427 (623)
+.|..+.+++.++++++.+...+...
T Consensus 705 ~~i~~~~~~l~~li~~LL~~srl~~~------------------------------------------------------ 730 (895)
T PRK10490 705 SEIRQQVLNTTRLVNNLLDMARIQSG------------------------------------------------------ 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC------------------------------------------------------
Confidence 88888888988888888543110000
Q ss_pred cccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhc
Q 006963 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507 (623)
Q Consensus 428 ~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t 507 (623)
......+++++.++++.++..+...+.. ..+.++.+.....+.+|+..|.|||.|||+||+||+
T Consensus 731 --------------~~~l~~~~~~L~eli~~~l~~l~~~~~~--~~i~l~~~~~~~~v~~D~~~L~qVL~NLL~NAik~s 794 (895)
T PRK10490 731 --------------GFNLRKEWLTLEEVVGSALQMLEPGLSG--HPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYA 794 (895)
T ss_pred --------------CCcccccccCHHHHHHHHHHHHHHHhcC--CCEEEEcCCCCeEEEECHHHHHHHHHHHHHHHHHhC
Confidence 0001256789999999999999887743 556666555556899999999999999999999999
Q ss_pred CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 006963 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 587 (623)
Q Consensus 508 ~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~ 587 (623)
+.++.|.|.+. ..++.+.|.|.|+|+||+++.++++|+|||+++... ...|+||||+|||++++.|||+|++.
T Consensus 795 ~~g~~I~I~~~-~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~------~~~G~GLGL~Ivk~ive~hGG~I~v~ 867 (895)
T PRK10490 795 GAQAEIGIDAH-VEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES------AIPGVGLGLAICRAIVEVHGGTIWAE 867 (895)
T ss_pred CCCCeEEEEEE-EeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC------CCCCccHHHHHHHHHHHHcCCEEEEE
Confidence 99899999987 566789999999999999999999999999864321 12499999999999999999999999
Q ss_pred eCCCccCcCCCCeEEEEEEecCCCC
Q 006963 588 SPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 588 S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
|.+ + +||+|+|+||...+
T Consensus 868 s~~------~-~Gt~f~i~LPl~~~ 885 (895)
T PRK10490 868 NRP------E-GGACFRVTLPLETP 885 (895)
T ss_pred ECC------C-CeEEEEEEeECCCC
Confidence 975 5 49999999998653
No 5
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=1e-30 Score=309.04 Aligned_cols=213 Identities=19% Similarity=0.287 Sum_probs=181.9
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcc
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~ 388 (623)
++++++++|||||||++|.++++++.......+...++++.|..+++++.++++++.++
T Consensus 451 ~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~--------------------- 509 (828)
T PRK13837 451 GTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAF--------------------- 509 (828)
T ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 67999999999999999999999998877766777889999999999999999998542
Q ss_pred cCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHhh
Q 006963 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (623)
Q Consensus 389 ~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a~ 468 (623)
++......+++++.+++++++..+....
T Consensus 510 ---------------------------------------------------sr~~~~~~~~~~l~~ll~~~~~~~~~~~- 537 (828)
T PRK13837 510 ---------------------------------------------------GRKGERNTKPFDLSELVTEIAPLLRVSL- 537 (828)
T ss_pred ---------------------------------------------------hCCCCCCCcEEcHHHHHHHHHHHHHHHc-
Confidence 1112223578999999999999887544
Q ss_pred hcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe--------------cCCeEEEEEeeCCC
Q 006963 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA--------------PAGDALVVIDDDGP 534 (623)
Q Consensus 469 ~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~--------------~~~~v~I~V~D~G~ 534 (623)
.+++.+.+...+.+..+.+|+..|.||+.||++||+||++.++.|.|.+... +++.+.|.|.|+|+
T Consensus 538 ~~~i~l~~~~~~~~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~ 617 (828)
T PRK13837 538 PPGVELDFDQDQEPAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGA 617 (828)
T ss_pred cCCcEEEEEeCCCCceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCC
Confidence 3567777766566678999999999999999999999999889999988743 25679999999999
Q ss_pred CCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 535 DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 535 GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
||+++.++++|+|||+++. .|+||||+|||++++.|||+|++.|.+ +. ||+|+|+||...
T Consensus 618 GI~~e~~~~iFe~F~~~~~----------~G~GLGL~i~~~iv~~~gG~i~v~s~~------g~-Gt~f~i~LP~~~ 677 (828)
T PRK13837 618 GIDEAVLPHIFEPFFTTRA----------GGTGLGLATVHGIVSAHAGYIDVQSTV------GR-GTRFDVYLPPSS 677 (828)
T ss_pred CCCHHHHHHhhCCcccCCC----------CCCcchHHHHHHHHHHCCCEEEEEecC------CC-eEEEEEEEeCCC
Confidence 9999999999999998642 299999999999999999999999976 54 999999999865
No 6
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=6.1e-31 Score=310.16 Aligned_cols=236 Identities=18% Similarity=0.184 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 006963 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (623)
Q Consensus 294 l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~ 373 (623)
+.+....+++....+.+|+++++|||||||++|.+++++|.... .++..++.++.|..++++|.++++++.+...+
T Consensus 436 L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~-~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl--- 511 (894)
T PRK10618 436 LQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTS-DEEQQQPELDQLAEQSDVLVRLVDNIQLLNML--- 511 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 44444556666677789999999999999999999999986543 34556788999999999999999998553210
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHH
Q 006963 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (623)
Q Consensus 374 ~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ 453 (623)
.. .......+++++.
T Consensus 512 -------------e~----------------------------------------------------~~~~l~~~~~~L~ 526 (894)
T PRK10618 512 -------------ET----------------------------------------------------QDWKPEQELFSLQ 526 (894)
T ss_pred -------------hc----------------------------------------------------CCCcccceeECHH
Confidence 00 0001135689999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEec-CCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEec--CCeEEEEEe
Q 006963 454 DVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP--AGDALVVID 530 (623)
Q Consensus 454 ell~~ll~~~~~~a~~~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~--~~~v~I~V~ 530 (623)
+++++++..+.+.+..+++.+.+... +.+..+.+|+.+|+||+.|||.||+||++. |.|.|.+.... ++.+.|.|.
T Consensus 527 ~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~-G~I~I~v~~~~~~~~~l~I~V~ 605 (894)
T PRK10618 527 DLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAY-GKITLEVDQDESSPDRLTIRIL 605 (894)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCC-CeEEEEEEEccCCCcEEEEEEE
Confidence 99999999999999888888887743 455678999999999999999999999975 77888876322 256999999
Q ss_pred eCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 531 DDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 531 D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
|+|+||+++.++++|+||++.+.... ...|+||||+|||+|++.|||+|++.|.+ |. ||+|+|+||..
T Consensus 606 DtG~GI~~e~l~~IFePF~t~~~~~~-----~~~GtGLGLaI~k~Lve~~GG~I~v~S~~------g~-GT~F~I~LPl~ 673 (894)
T PRK10618 606 DTGAGVSIKELDNLHFPFLNQTQGDR-----YGKASGLTFFLCNQLCRKLGGHLTIKSRE------GL-GTRYSIHLKML 673 (894)
T ss_pred ECCCCCCHHHHHHhcCccccCCCCCC-----CCCCcChhHHHHHHHHHHcCCEEEEEECC------CC-cEEEEEEEEcc
Confidence 99999999999999999998643211 12499999999999999999999999986 65 99999999986
Q ss_pred C
Q 006963 611 A 611 (623)
Q Consensus 611 ~ 611 (623)
.
T Consensus 674 ~ 674 (894)
T PRK10618 674 A 674 (894)
T ss_pred C
Confidence 4
No 7
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.98 E-value=1e-29 Score=294.53 Aligned_cols=347 Identities=18% Similarity=0.213 Sum_probs=241.3
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceEEEEeecCCCCCcCe-ee---ec-----cccccC--
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNATDI-VV---LV-----GNFNMP-- 179 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~-vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~-~~---l~-----g~~~~~-- 179 (623)
....|-.++++..++.+++.+ ++..+ +|+.+.+ . ..+.+.+.|.....+.. .. +. ..+-+.
T Consensus 315 ~~~~~~~~l~~~~~~~l~~~l--~~~~g~l~l~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (679)
T TIGR02916 315 SEARSSDDLGERVIRALAQLV--ESPGGVLWLKSGN---D--GLYRPAARWNQPLAQAFEPSDSAFCQFLQESGWIINLE 387 (679)
T ss_pred hCCCCCccHHHHHHHHHHHHh--CCCCceEEEEcCC---C--CEEeeehhcCCCCcccCCCCCCHHHHHHHhCCCcccch
Confidence 445566788889999999999 55555 8988721 1 24555554433211000 00 00 000000
Q ss_pred cchhhhh---hhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 006963 180 AGLRAAE---AALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (623)
Q Consensus 180 ~~~~~~~---~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e 256 (623)
.....+. .......... .+...+++||..++.++|++++..+..+ ..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~vPL~~~~~~~G~l~l~~~~~~-------------------~~---------- 437 (679)
T TIGR02916 388 EARSEPDHYSGLVLPEWLRE-IPNAWLIVPLISGEELVGFVVLARPRTA-------------------GE---------- 437 (679)
T ss_pred hhcCCcccccccccchhhhc-CCCceEEEEeccCCEEEEEEEEecCCCC-------------------CC----------
Confidence 0000000 0000111112 2335789999999999999999831100 11
Q ss_pred cchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 006963 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW--QNNARMSNLVEQIRGPLSSIQTLSKMLS 334 (623)
Q Consensus 257 ~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q~~~~lqq~~~--q~~e~la~lsHELRtPLtaI~~~a~lL~ 334 (623)
|+.+++..++.++++++.+....+..+.++++.+ ..+++.+.++|||||||+.|..+.+...
T Consensus 438 ----------------~~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~~~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~ 501 (679)
T TIGR02916 438 ----------------FNWEVRDLLKTAGRQAASYLAQMEASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAE 501 (679)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5557788888999999887765555544444332 2377888999999999999988887776
Q ss_pred hhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhcccccccccccccc
Q 006963 335 LHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKL 414 (623)
Q Consensus 335 ~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~ 414 (623)
+.....+...++.+.+....++++++++++...
T Consensus 502 ~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~----------------------------------------------- 534 (679)
T TIGR02916 502 RHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK----------------------------------------------- 534 (679)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 554444445567777777888888887776321
Q ss_pred ccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHH
Q 006963 415 QNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQ 494 (623)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~q 494 (623)
.. .....++++.++++++++.+... +..+.++. +....+.+|+..+.+
T Consensus 535 -----------------------~~----~~~~~~~~l~~ll~~~~~~~~~~----~~~~~l~~-~~~~~v~~d~~~l~~ 582 (679)
T TIGR02916 535 -----------------------GL----EEEKLCVDLVDLLRRAIASKRAQ----GPRPEVSI-DTDLSVRADRERLER 582 (679)
T ss_pred -----------------------cc----ccCCccccHHHHHHHHHHHhhhh----cCCceEEe-CCCceEEECHHHHHH
Confidence 00 01245689999999998876543 23344443 334789999999999
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhh-HhhhcCCCcccccccccccCCCCCCcchhHHHH
Q 006963 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT-QMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 573 (623)
Q Consensus 495 VL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~-~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIv 573 (623)
|+.|||+||+||++.++.|.|.+. ..++.+.|+|.|||+||+++. ++++|+||++++. .|+|+||++|
T Consensus 583 vl~nLl~NAik~~~~~~~I~I~~~-~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~----------~G~GLGL~i~ 651 (679)
T TIGR02916 583 VLGHLVQNALEATPGEGRVAIRVE-RECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG----------AGMGIGVYEC 651 (679)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEE-EcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC----------CCcchhHHHH
Confidence 999999999999998899999998 556789999999999999998 9999999998642 3999999999
Q ss_pred HHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEec
Q 006963 574 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608 (623)
Q Consensus 574 r~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP 608 (623)
|++++.|||+|++.|.+ +. ||+|+++||
T Consensus 652 ~~iv~~~gG~i~v~s~~------g~-Gt~f~i~LP 679 (679)
T TIGR02916 652 RQYVEEIGGRIEVESTP------GQ-GTIFTLVLP 679 (679)
T ss_pred HHHHHHcCCEEEEEecC------CC-ceEEEEEeC
Confidence 99999999999999976 54 999999998
No 8
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=281.35 Aligned_cols=222 Identities=20% Similarity=0.228 Sum_probs=177.0
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~ 387 (623)
.++++++++|||||||++|.+++++|.......+....+++.|..++++|.++++++.+... . .
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r--------~--------~ 267 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSK--------I--------E 267 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h--------c
Confidence 45799999999999999999999998765444455567788899999999999999855311 0 0
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHh
Q 006963 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (623)
Q Consensus 388 ~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a 467 (623)
. .+ .....+.+++..+++.+...+....
T Consensus 268 ~---------------------------------------------------~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (430)
T PRK11006 268 A---------------------------------------------------AP-TIDLNEKVDVPMMLRVLEREAQTLS 295 (430)
T ss_pred C---------------------------------------------------CC-CcccCCccCHHHHHHHHHHHHHHHh
Confidence 0 00 0011356788888888777766555
Q ss_pred hhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCC
Q 006963 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547 (623)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFep 547 (623)
.++..+.+.. +....+.+|+..|.+|+.||++||+||+++++.|.|.+. ..++.+.|+|.|+|+||+++.++++|+|
T Consensus 296 -~~~~~i~~~~-~~~~~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~-~~~~~~~i~V~D~G~Gi~~~~~~~if~~ 372 (430)
T PRK11006 296 -QGKHTITFEV-DNSLKVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQ-RVPQGAEFSVEDNGPGIAPEHIPRLTER 372 (430)
T ss_pred -cCCcEEEEec-CCCceEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE-EcCCEEEEEEEEcCCCCCHHHHHHhccC
Confidence 3566666664 344578999999999999999999999998899999887 5667799999999999999999999999
Q ss_pred CcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 548 F~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
||+.+..... ...|+||||+|||++++.|||+|++.|.+ +. ||+|+++||...
T Consensus 373 f~~~~~~~~~----~~~G~GLGL~ivk~iv~~~gG~i~i~s~~------~~-Gt~f~i~lP~~~ 425 (430)
T PRK11006 373 FYRVDKARSR----QTGGSGLGLAIVKHALSHHDSRLEIESEV------GK-GTRFSFVLPERL 425 (430)
T ss_pred cccccCCCCC----CCCCCchHHHHHHHHHHHCCCEEEEEecC------CC-ceEEEEEechHh
Confidence 9987543222 12499999999999999999999999975 54 999999999754
No 9
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.97 E-value=2e-29 Score=300.16 Aligned_cols=237 Identities=15% Similarity=0.134 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006963 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (623)
Q Consensus 293 ~l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~ 372 (623)
.+.+..+.+++..+.+..|+++++|||||||++|.++.++|.... .++..+++++.|..++++|.++++++.+...+
T Consensus 432 ~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~-~~~~~~~~l~~i~~~~~~L~~lI~dlLd~sri-- 508 (924)
T PRK10841 432 SLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE-LPKGVDRLVTAMNNSSSLLLKIISDILDFSKI-- 508 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 344555556666667788999999999999999999999986543 34455678899999999999999998653210
Q ss_pred hhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeH
Q 006963 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (623)
Q Consensus 373 ~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L 452 (623)
... .+ ....+++++
T Consensus 509 --------------e~~----------------------------------------------~~------~l~~~~~~l 522 (924)
T PRK10841 509 --------------ESE----------------------------------------------QL------KIEPREFSP 522 (924)
T ss_pred --------------cCC----------------------------------------------Cc------eeeeEEecH
Confidence 000 00 012567999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEec-CCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEee
Q 006963 453 SDVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531 (623)
Q Consensus 453 ~ell~~ll~~~~~~a~~~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D 531 (623)
.+++++++..+.+.+..+++.+.+... ..+..+.+|+.+|+|||.|||+||+||++. |.|.|.+. ..++.+.|.|.|
T Consensus 523 ~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~-G~I~I~v~-~~~~~l~i~V~D 600 (924)
T PRK10841 523 REVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVR-VDGDYLSFRVRD 600 (924)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCC-CcEEEEEE-EeCCEEEEEEEE
Confidence 999999999999999888888877643 334579999999999999999999999986 67888887 466789999999
Q ss_pred CCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 532 DGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 532 ~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
+|+||+++.++++|+|||+.+...... ..|+||||+||++|++.|||+|++.|.+ +. ||+|+|.||...
T Consensus 601 tG~GI~~e~~~~lFepF~~~~~~~~~~----~~GtGLGL~I~k~lv~~~gG~I~v~S~~------g~-Gt~F~i~LP~~~ 669 (924)
T PRK10841 601 TGVGIPAKEVVRLFDPFFQVGTGVQRN----FQGTGLGLAICEKLINMMDGDISVDSEP------GM-GSQFTIRIPLYG 669 (924)
T ss_pred cCcCCCHHHHHHHhcccccCCCCCCCC----CCCeehhHHHHHHHHHHCCCEEEEEEcC------CC-cEEEEEEEECCc
Confidence 999999999999999999865332221 2499999999999999999999999986 65 999999999864
No 10
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=8.9e-30 Score=256.82 Aligned_cols=212 Identities=21% Similarity=0.244 Sum_probs=172.4
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~ 387 (623)
...+.++++|||||||+.|+|.+++|.+.+.. +..+++.+-|..++||+..+++.+.-
T Consensus 132 ~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd-~~~~~lt~lIieE~DRl~~LVDRme~--------------------- 189 (363)
T COG3852 132 VKGLVRGLAHEIKNPLGGIRGAAQLLERALPD-EALRELTQLIIEEADRLRNLVDRLEV--------------------- 189 (363)
T ss_pred HHHHHHHHHHHhcCcccchhhHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 36788999999999999999999999887644 34789999999999999999998821
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHh
Q 006963 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (623)
Q Consensus 388 ~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a 467 (623)
+++-..+...++|++++++.+.......+
T Consensus 190 ---------------------------------------------------~~~~rp~~r~~~NIH~VLerV~~lv~~e~ 218 (363)
T COG3852 190 ---------------------------------------------------LGPQRPGDRVPVNIHEVLERVRALVEAEF 218 (363)
T ss_pred ---------------------------------------------------cCCCCCcccccchHHHHHHHHHHHHhccc
Confidence 22222334568999999999998887665
Q ss_pred hhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcC----CCCeEEEEEEE-----ecCC----eEEEEEeeCCC
Q 006963 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ----VGGKVEIVSAA-----APAG----DALVVIDDDGP 534 (623)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~----~gg~I~I~~~~-----~~~~----~v~I~V~D~G~ 534 (623)
. .++.+.=+..+..+.+++|+.+|.|||.||+.||+++.. .+|.|.++... ..+. .+.|.|.||||
T Consensus 219 ~-~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGP 297 (363)
T COG3852 219 A-DNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGP 297 (363)
T ss_pred C-CceEEeecCCCCCccccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCC
Confidence 4 344444445566678999999999999999999999843 34788877631 0111 25678999999
Q ss_pred CCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 535 DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 535 GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|||++.++++|.||.+++ ..|+||||+|+++|+.+|||.|+++|.+ +.|+|+|.+|...
T Consensus 298 GVP~~L~~~lF~P~Vs~r----------~~GsGLGLala~~li~qH~G~Ie~~S~P--------g~T~FrvllP~~~ 356 (363)
T COG3852 298 GVPPDLQDHLFYPMVSGR----------EGGTGLGLALAQNLIDQHGGKIEFDSWP--------GRTVFRVLLPIRK 356 (363)
T ss_pred CCChHHhhhccccccccC----------CCCccccHHHHHHHHHhcCCEEEEeccC--------CceEEEEEeeccc
Confidence 999999999999999974 2399999999999999999999999975 5799999999987
No 11
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=5.3e-29 Score=270.71 Aligned_cols=214 Identities=20% Similarity=0.306 Sum_probs=180.7
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhc--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMK--RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~--~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i 386 (623)
+++.++++|||++||++|++|++....-+. ..+...+.++.|..=.+||..+..+|..
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~-------------------- 444 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKS-------------------- 444 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 777889999999999999999987654333 3355566677777777888877777732
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHH
Q 006963 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (623)
Q Consensus 387 ~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~ 466 (623)
|++.......++.+.++|+.++..+...
T Consensus 445 ----------------------------------------------------FArk~~~a~~~v~l~~ai~~Al~ll~~R 472 (603)
T COG4191 445 ----------------------------------------------------FARKSRDAAGPVSLREAIEGALELLRGR 472 (603)
T ss_pred ----------------------------------------------------HhccCccccCCccHHHHHHHHHHHHHHh
Confidence 3333333467899999999999999999
Q ss_pred hhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcC--CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhh
Q 006963 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544 (623)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~--~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~i 544 (623)
.+..+..+.+..++.+++|.+++.+|+|||.|||.||+++.. ..++|.|.+. ..++.+.|+|.||||||+++.+.++
T Consensus 473 ~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~-~~~~~v~l~VrDnGpGi~~e~~~~l 551 (603)
T COG4191 473 LRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQ-REGGQVVLTVRDNGPGIAPEALPHL 551 (603)
T ss_pred hhccCceeeccCCCCCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEE-ecCCeEEEEEccCCCCCCHHHHHhh
Confidence 988888888877777899999999999999999999999853 4579999998 6778899999999999999999999
Q ss_pred cCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 545 FepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
|+|||+++..++ |.||||+|++.|++.+||+|++.+.+ + +|+.|+|.||..
T Consensus 552 FePF~TtK~~~~--------GLGLGLaIS~~i~~d~GGsL~v~n~~------~-~Ga~F~i~L~~a 602 (603)
T COG4191 552 FEPFFTTKPVGK--------GLGLGLAISQNIARDLGGSLEVANHP------E-GGASFTIELRRA 602 (603)
T ss_pred cCCccccCcccC--------CcchhHHHHHHHHHHhCCeEEeecCC------C-CceEEEEEeecC
Confidence 999999875544 99999999999999999999999864 3 699999999975
No 12
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=8e-29 Score=273.61 Aligned_cols=213 Identities=20% Similarity=0.302 Sum_probs=182.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcc
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~ 388 (623)
+++.++++|||||||++|.++++++......+...++.++.|..+.+++.++++++.+..
T Consensus 238 ~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~-------------------- 297 (457)
T PRK10364 238 GHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELV-------------------- 297 (457)
T ss_pred HHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 567889999999999999999999988766666677888889999999999988884421
Q ss_pred cCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHhh
Q 006963 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (623)
Q Consensus 389 ~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a~ 468 (623)
+.......++++.++++.++..+...+.
T Consensus 298 ----------------------------------------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 325 (457)
T PRK10364 298 ----------------------------------------------------KPTHLALQAVDLNDLINHSLQLVSQDAN 325 (457)
T ss_pred ----------------------------------------------------CcCCCcceEecHHHHHHHHHHHHHHHHH
Confidence 1111235689999999999999999988
Q ss_pred hcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCC
Q 006963 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548 (623)
Q Consensus 469 ~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF 548 (623)
.+++.+.+...+....+.+|+..|.+++.|||+||+||+..++.|.|.+. ..++.+.|.|.|+|+||+++.++++|++|
T Consensus 326 ~~~i~l~~~~~~~~~~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~-~~~~~~~i~V~D~G~Gi~~~~~~~if~~~ 404 (457)
T PRK10364 326 SREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTAS-ESGAGVKISVTDSGKGIAADQLEAIFTPY 404 (457)
T ss_pred hcCeEEEEEcCCCCceEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEE-EeCCeEEEEEEECCCCCCHHHHHHHhCcc
Confidence 88888888755545678899999999999999999999988899999997 55677999999999999999999999999
Q ss_pred cccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 549 ~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|+.+ ..|+||||+|||+++++|||+|++.+.+ +. ||+|+|+||...
T Consensus 405 ~~~k----------~~g~GlGL~iv~~~v~~~gG~i~i~s~~------~~-Gt~f~i~lP~~~ 450 (457)
T PRK10364 405 FTTK----------AEGTGLGLAVVHNIVEQHGGTIQVASQE------GK-GATFTLWLPVNI 450 (457)
T ss_pred ccCC----------CCCCcccHHHHHHHHHHCCCEEEEEeCC------CC-cEEEEEEecCCC
Confidence 9763 1289999999999999999999999975 54 999999999865
No 13
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=1.3e-28 Score=270.43 Aligned_cols=215 Identities=17% Similarity=0.213 Sum_probs=164.5
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~ 387 (623)
..+++..++|+|||||++|.++..+|...... .........+.....++.+.+..+.+.+.
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------ 336 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRRGDD-AGNPASAAMLQQALSAGREHMEALRQVIP------------------ 336 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHHHHHHHHHhhc------------------
Confidence 36678888999999999999999998765222 12223333333333333344444422211
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHh
Q 006963 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (623)
Q Consensus 388 ~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a 467 (623)
. .......++|+.+++++++..+...+
T Consensus 337 ---------------------------------------------------~--~~~~~~~~~dl~~~~~~~~~~~~~~~ 363 (494)
T TIGR02938 337 ---------------------------------------------------Q--SPQEIVVPVNLNQILRDVITLSTPRL 363 (494)
T ss_pred ---------------------------------------------------c--CcccccccccHHHHHHHHHHHhHHHH
Confidence 0 00012457999999999999998888
Q ss_pred hhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEecCCeEEEEEeeCCCCCChhhHhh
Q 006963 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG----GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543 (623)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~g----g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (623)
..+++.+.+........+.+|+..|+|||.||+.||+||++.+ +.|.|.+. ..++.+.|+|.|||+|||++.+.+
T Consensus 364 ~~~~i~~~~~~~~~~~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~-~~~~~~~~~V~D~G~Gi~~~~~~~ 442 (494)
T TIGR02938 364 LAAGIVVDWQPAATLPAILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTA-LNGDLIVVSILDSGPGIPQDLRYK 442 (494)
T ss_pred HhCCCEEEEecCCCCCeeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEE-ecCCEEEEEEEeCCCCCCHHHHHH
Confidence 7788888877555555789999999999999999999998776 35777766 567789999999999999999999
Q ss_pred hcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 544 iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
+|+|||+++... ..|+||||+|||.|++.|||+|++.|.+ +. ||+|+|+||.
T Consensus 443 iF~~f~~~~~~~-------~~G~GlGL~i~~~iv~~~gG~i~~~s~~------~~-G~~f~i~lp~ 494 (494)
T TIGR02938 443 VFEPFFTTKGGS-------RKHIGMGLSVAQEIVADHGGIIDLDDDY------SE-GCRIIVEFRV 494 (494)
T ss_pred hcCCCcccCCCC-------CCCCcccHHHHHHHHHHcCCEEEEEECC------CC-CEEEEEEecC
Confidence 999999975332 1399999999999999999999999986 65 9999999995
No 14
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.97 E-value=2.3e-29 Score=295.61 Aligned_cols=230 Identities=21% Similarity=0.212 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHH
Q 006963 302 QQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381 (623)
Q Consensus 302 qq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e 381 (623)
++..+.+.+|+++++|||||||++|.++++++.... .++..+++++.|..+++++..+++++.+...+...
T Consensus 277 ~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~-------- 347 (779)
T PRK11091 277 EKASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-LTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERR-------- 347 (779)
T ss_pred HHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCC--------
Confidence 334445688999999999999999999999987543 34456778999999999999999998553220000
Q ss_pred HHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHH
Q 006963 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461 (623)
Q Consensus 382 ~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~ 461 (623)
.+. ...+++++.+++++++.
T Consensus 348 ------------------------------------------------------~~~------~~~~~~~l~~~i~~~~~ 367 (779)
T PRK11091 348 ------------------------------------------------------KLQ------LDNQPIDFTDFLADLEN 367 (779)
T ss_pred ------------------------------------------------------CcE------EEeeccCHHHHHHHHHH
Confidence 000 12467999999999999
Q ss_pred HHHHHhhhcCCeEEEEecC-CceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhh
Q 006963 462 AVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540 (623)
Q Consensus 462 ~~~~~a~~~~~~i~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~ 540 (623)
.+...+..+++.+.+.... .+..+.+|+..|.||+.|||+||+||++. |.|.|.+....++.+.|.|.|+|+||+++.
T Consensus 368 ~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~-g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~ 446 (779)
T PRK11091 368 LSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQ-GGVTVRVRYEEGDMLTFEVEDSGIGIPEDE 446 (779)
T ss_pred HHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCC-CcEEEEEEEccCCEEEEEEEecCCCCCHHH
Confidence 9999998888888887533 34579999999999999999999999965 678888874436779999999999999999
Q ss_pred HhhhcCCCcccc-cccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 541 QMHSLTPFGSEL-FSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 541 ~~~iFepF~~~~-~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
++++|+|||+.+ ..... ...|+||||+|||+|++.|||+|++.|.+ +. ||+|+++||....
T Consensus 447 ~~~iF~~f~~~~~~~~~~----~~~GtGLGL~i~~~iv~~~gG~i~v~s~~------g~-Gt~f~i~lP~~~~ 508 (779)
T PRK11091 447 LDKIFAMYYQVKDSHGGK----PATGTGIGLAVSKRLAQAMGGDITVTSEE------GK-GSCFTLTIHAPAV 508 (779)
T ss_pred HHHHHHHhhcccCCCCCC----CCCCcchHHHHHHHHHHHcCCEEEEEecC------CC-eEEEEEEEecccc
Confidence 999999999974 22221 12499999999999999999999999986 65 9999999998653
No 15
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.97 E-value=1.4e-28 Score=295.05 Aligned_cols=228 Identities=19% Similarity=0.214 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Q 006963 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (623)
Q Consensus 300 ~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~ 379 (623)
..++....+.+|+++++|||||||++|.+++++|.+. ..++..+++++.|.+.+++|..+++++.++..+...
T Consensus 456 ~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~------ 528 (968)
T TIGR02956 456 EAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT-GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAG------ 528 (968)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence 3444555568999999999999999999999998654 334556788999999999999999998654220000
Q ss_pred HHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHH
Q 006963 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDL 459 (623)
Q Consensus 380 ~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~l 459 (623)
......+++++.++++++
T Consensus 529 --------------------------------------------------------------~~~~~~~~~~l~~ll~~~ 546 (968)
T TIGR02956 529 --------------------------------------------------------------HLSISPRPFDLNALLDDV 546 (968)
T ss_pred --------------------------------------------------------------CCeeeecccCHHHHHHHH
Confidence 000135789999999999
Q ss_pred HHHHHHHhhhcCCeEEEEec-CCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCe-EEEEEeeCCCCCC
Q 006963 460 FEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD-ALVVIDDDGPDMH 537 (623)
Q Consensus 460 l~~~~~~a~~~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~-v~I~V~D~G~GI~ 537 (623)
+..+...+..+++.+.+..+ ..+..+.+|+..|+|||.|||+||+||++. |.|.|.+. ..++. +.|.|.|+|+||+
T Consensus 547 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~-g~i~i~~~-~~~~~~~~i~V~D~G~Gi~ 624 (968)
T TIGR02956 547 HHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDR-GSVVLRVS-LNDDSSLLFEVEDTGCGIA 624 (968)
T ss_pred HHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCC-CeEEEEEE-EcCCCeEEEEEEeCCCCCC
Confidence 99999999888999888854 445678999999999999999999999975 67888887 34455 9999999999999
Q ss_pred hhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 538 YMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 538 ~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
++.+.++|+||++.+... ...|+||||+|||++++.|||+|++.|.+ +. ||+|+++||...
T Consensus 625 ~~~~~~if~~f~~~~~~~------~~~g~GLGL~i~~~l~~~~gG~i~~~s~~------~~-Gt~f~~~lp~~~ 685 (968)
T TIGR02956 625 EEEQATLFDAFTQADGRR------RSGGTGLGLAISQRLVEAMDGELGVESEL------GV-GSCFWFTLPLTR 685 (968)
T ss_pred HHHHHHHHhhhhccCCCC------CCCCccHHHHHHHHHHHHcCCEEEEEecC------CC-cEEEEEEEEcCC
Confidence 999999999999976211 12499999999999999999999999986 54 999999999865
No 16
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.97 E-value=1.7e-28 Score=292.57 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 006963 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (623)
Q Consensus 299 ~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~ 378 (623)
+..++....+.+++++++|||||||++|.+++++|.... .++..+++++.+...+++|..+++++.+...+...
T Consensus 389 ~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~----- 462 (921)
T PRK15347 389 QRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTP-LTAEQMDLADTARQCTLSLLAIINNLLDFSRIESG----- 462 (921)
T ss_pred HHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 334445555688999999999999999999999987543 34556788999999999999999998653220000
Q ss_pred hHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHH
Q 006963 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (623)
Q Consensus 379 ~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ 458 (623)
.+. ...+++++.+++++
T Consensus 463 ---------------------------------------------------------~~~------~~~~~~~l~~~~~~ 479 (921)
T PRK15347 463 ---------------------------------------------------------QMT------LSLEETALLPLLDQ 479 (921)
T ss_pred ---------------------------------------------------------Ccc------ceecccCHHHHHHH
Confidence 000 12467899999999
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCC
Q 006963 459 LFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537 (623)
Q Consensus 459 ll~~~~~~a~~~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~ 537 (623)
++..+...+..+++.+.+... ..+..+.+|+.+|+||+.|||+||+||++. |.|.|.+. ..++.+.|+|.|+|+||+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~-g~I~i~~~-~~~~~~~i~V~D~G~Gi~ 557 (921)
T PRK15347 480 AMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTET-GGIRLRVK-RHEQQLCFTVEDTGCGID 557 (921)
T ss_pred HHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCC-CCEEEEEE-EcCCEEEEEEEEcCCCCC
Confidence 999999998888888877643 335679999999999999999999999976 56999887 566789999999999999
Q ss_pred hhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 538 YMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 538 ~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
++.++++|+||++.+.. ..|+||||+||+++++.|||+|++.|.+ +. ||+|++.||...
T Consensus 558 ~~~~~~if~~f~~~~~~--------~~g~GLGL~i~~~~~~~~gG~i~i~s~~------~~-Gt~f~i~lp~~~ 616 (921)
T PRK15347 558 IQQQQQIFTPFYQADTH--------SQGTGLGLTIASSLAKMMGGELTLFSTP------GV-GSCFSLVLPLNE 616 (921)
T ss_pred HHHHHHHhcCcccCCCC--------CCCCchHHHHHHHHHHHcCCEEEEEecC------CC-ceEEEEEEECCC
Confidence 99999999999987532 2399999999999999999999999986 65 999999999854
No 17
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=5.3e-28 Score=258.05 Aligned_cols=227 Identities=18% Similarity=0.222 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 006963 296 QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375 (623)
Q Consensus 296 q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I 375 (623)
+....+++..+++++++++++|||||||++|+++.+++..... .....+....+++.+.++++.....
T Consensus 125 ~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~------~~~~~~~~~~~~l~~~i~~ll~~~r------ 192 (356)
T PRK10755 125 QLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH------IDVAPLIARLDQMMHTVEQLLQLAR------ 192 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3344445555556789999999999999999999988754321 1133344555666666666533211
Q ss_pred hhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeH-HH
Q 006963 376 VRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV-SD 454 (623)
Q Consensus 376 ~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L-~e 454 (623)
.. . .+ .......+++ .+
T Consensus 193 --~~--------~-------------------------------------------------~~---~~~~~~~~~l~~~ 210 (356)
T PRK10755 193 --AG--------Q-------------------------------------------------SF---SSGHYQTVKLLED 210 (356)
T ss_pred --cc--------c-------------------------------------------------cc---ccccchhhhHHHH
Confidence 00 0 00 0012356777 89
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCC
Q 006963 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534 (623)
Q Consensus 455 ll~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~ 534 (623)
++..++..+...+..+++.+.+...+....+.+|+..+.+|+.||++||+||++.++.|.|.+. ..++.+.|.|.|+|+
T Consensus 211 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~-~~~~~~~i~V~D~G~ 289 (356)
T PRK10755 211 VILPSQDELSEMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLS-QEDGGAVLAVEDEGP 289 (356)
T ss_pred HHHHHHHHHHHHHHHhCCeEEeccCCCceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEE-EcCCEEEEEEEECCC
Confidence 9999988888888777777777544566789999999999999999999999988889999987 567789999999999
Q ss_pred CCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 535 DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 535 GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
||+++..+++|++|++.+.. ..|+||||+||+++++.|||+|++.|.+ +.+||+|++.||...
T Consensus 290 Gi~~~~~~~if~~f~~~~~~--------~~g~GlGL~i~~~i~~~~gg~i~i~s~~------~~~Gt~~~i~~p~~~ 352 (356)
T PRK10755 290 GIDESKCGELSKAFVRMDSR--------YGGIGLGLSIVSRITQLHHGQFFLQNRQ------ERSGTRAWVWLPKAQ 352 (356)
T ss_pred CCCHHHHHHhCCCeEeCCCC--------CCCcCHHHHHHHHHHHHCCCEEEEEECC------CCCeEEEEEEecCCC
Confidence 99999999999999976421 2399999999999999999999999975 525999999999864
No 18
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=2.7e-28 Score=268.19 Aligned_cols=230 Identities=16% Similarity=0.198 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006963 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (623)
Q Consensus 293 ~l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~ 372 (623)
.+.+....+++....+++++++++|||||||+.|++..+++.. .. + +..+.+.+..+++.++++++..+..
T Consensus 197 ~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~-~~--~---~~~~~i~~~~~~l~~li~~ll~~~r--- 267 (433)
T PRK10604 197 AFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDN-LS--A---AESQALNRDIGQLEALIEELLTYAR--- 267 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcC-CC--c---HHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 4455556666666677899999999999999999998888752 11 1 1223467778888888888754311
Q ss_pred hhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeH
Q 006963 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (623)
Q Consensus 373 ~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L 452 (623)
+ .. .......+++++
T Consensus 268 -----l--------~~----------------------------------------------------~~~~~~~~~~~l 282 (433)
T PRK10604 268 -----L--------DR----------------------------------------------------PQNELHLSEPDL 282 (433)
T ss_pred -----c--------cC----------------------------------------------------CCcccCCCCCCH
Confidence 0 00 000112567999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeC
Q 006963 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532 (623)
Q Consensus 453 ~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~ 532 (623)
.+++++++..+...... ..+.+........+.+|+..+.+|+.|||+||++|+. +.|.|++. ..++.+.|.|.|+
T Consensus 283 ~~~l~~~i~~~~~~~~~--~~i~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~--~~I~I~~~-~~~~~~~I~V~D~ 357 (433)
T PRK10604 283 PAWLSTHLADIQAVTPE--KTVRLDTPHQGDYGALDMRLMERVLDNLLNNALRYAH--SRVRVSLL-LDGNQACLIVEDD 357 (433)
T ss_pred HHHHHHHHHHHHHHhhc--CcEEEEecCCCceEecCHHHHHHHHHHHHHHHHHhCC--CeEEEEEE-EECCEEEEEEEEc
Confidence 99999999999877744 4555554444556788999999999999999999984 67888887 5567899999999
Q ss_pred CCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 533 G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
|+||+++.++++|+|||+.+.+... ...|+||||+|||++++.|||+|++.+.+ + +||+|++.||....
T Consensus 358 G~Gi~~e~~~~if~~f~r~~~~~~~----~~~g~GLGL~ivk~i~~~~gG~i~v~s~~------~-~G~~f~i~lP~~~~ 426 (433)
T PRK10604 358 GPGIPPEERERVFEPFVRLDPSRDR----ATGGCGLGLAIVHSIALAMGGSVNCDESE------L-GGARFSFSWPVWHN 426 (433)
T ss_pred CCCCCHHHHhhcCCCCccCCCCCCC----CCCCccchHHHHHHHHHHCCCEEEEEecC------C-CeeEEEEEEeCCCC
Confidence 9999999999999999997544332 12489999999999999999999999975 5 49999999998763
No 19
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.96 E-value=4.6e-28 Score=289.10 Aligned_cols=229 Identities=18% Similarity=0.191 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 006963 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (623)
Q Consensus 299 ~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~ 378 (623)
...++..+.+..|+++++|||||||++|.+++++|.... ..+..+++++.|...++++.++++++.++..+
T Consensus 435 ~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~-------- 505 (914)
T PRK11466 435 AEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP-ALNAQRDDLRAITDSGESLLTILNDILDYSAI-------- 505 (914)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 334445555688999999999999999999999987543 34456788999999999999999998653210
Q ss_pred hHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHH
Q 006963 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (623)
Q Consensus 379 ~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ 458 (623)
.. ... .+. ...+++++.++++.
T Consensus 506 --------~~-------------------------------------~~~-------~~~------~~~~~~~l~~ll~~ 527 (914)
T PRK11466 506 --------EA-------------------------------------GGK-------NVS------VSDEPFEPRPLLES 527 (914)
T ss_pred --------hC-------------------------------------CCC-------cce------ecccccCHHHHHHH
Confidence 00 000 000 12467999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEecC-CceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCC
Q 006963 459 LFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537 (623)
Q Consensus 459 ll~~~~~~a~~~~~~i~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~ 537 (623)
++..+...+..+++.+.+...+ .+..+.+|+..|+||+.|||+||+||++. |.|.|.+. ..++.+.|.|.|+|+||+
T Consensus 528 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~-g~I~i~~~-~~~~~~~i~V~D~G~Gi~ 605 (914)
T PRK11466 528 TLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDE-GSIVLRSR-TDGEQWLVEVEDSGCGID 605 (914)
T ss_pred HHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCC-CeEEEEEE-EcCCEEEEEEEECCCCCC
Confidence 9999999998888888877543 34579999999999999999999999975 78999887 566789999999999999
Q ss_pred hhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 538 YMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 538 ~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
++.++++|+||++.... ..|+||||+|||++++.|||+|++.|.+ +. ||+|+|.||...
T Consensus 606 ~~~~~~if~~f~~~~~~--------~~g~GLGL~i~~~l~~~~gG~i~v~s~~------~~-Gt~f~i~lP~~~ 664 (914)
T PRK11466 606 PAKLAEIFQPFVQVSGK--------RGGTGLGLTISSRLAQAMGGELSATSTP------EV-GSCFCLRLPLRV 664 (914)
T ss_pred HHHHHHHhchhhcCCCC--------CCCCcccHHHHHHHHHHcCCEEEEEecC------CC-CeEEEEEEEccc
Confidence 99999999999986322 2399999999999999999999999986 54 999999999764
No 20
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.96 E-value=1.9e-27 Score=265.35 Aligned_cols=223 Identities=16% Similarity=0.140 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Q 006963 301 LQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNE 380 (623)
Q Consensus 301 lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~ 380 (623)
.++...+.++++++++|||||||++|+++.+.|...... ...+....+..+.+++.++++++..... .
T Consensus 259 ~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~--~~~~~~~~~~~~i~ri~~~i~~ll~~~~---~------- 326 (485)
T PRK10815 259 ERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM--SVEQAEPIMLEQISRISQQIGYYLHRAS---M------- 326 (485)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-------
Confidence 344455557899999999999999999999988654322 1223344556666676666665532111 0
Q ss_pred HHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHH
Q 006963 381 ETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLF 460 (623)
Q Consensus 381 e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll 460 (623)
-+.......+.+++.+++++++
T Consensus 327 ----------------------------------------------------------~~~~~~~~~~~~~l~~ll~~~~ 348 (485)
T PRK10815 327 ----------------------------------------------------------RSEHNLLSRELHSVAPLLDNLT 348 (485)
T ss_pred ----------------------------------------------------------hcCCcccccceecHHHHHHHHH
Confidence 0000001246789999999999
Q ss_pred HHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhh
Q 006963 461 EAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540 (623)
Q Consensus 461 ~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~ 540 (623)
..+...+..+++.+.+... ....+.+|+..|.+|+.|||+||++|++. .|.|.+. ..++.+.|.|.|+|+||+++.
T Consensus 349 ~~l~~~~~~~~i~i~~~~~-~~~~v~~d~~~l~~vl~NLi~NAik~~~~--~i~I~~~-~~~~~v~I~V~D~G~GI~~e~ 424 (485)
T PRK10815 349 SALNKVYQRKGVNITLDIS-PEITFVGEKNDFMEVMGNVLDNACKYCLE--FVEISAR-QTDEHLHIVVEDDGPGIPESK 424 (485)
T ss_pred HHHHHHHHHCCcEEEEecC-CCcEEEeCHHHHHHHHHHHHHHHHHhcCC--cEEEEEE-EeCCEEEEEEEECCCCcCHHH
Confidence 9999988878888777643 44577899999999999999999999975 4666665 456789999999999999999
Q ss_pred HhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 541 QMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 541 ~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
++++|+||++..... .|+||||+||++++++|||+|.+.+.+ + +||+|+|.||....
T Consensus 425 ~~~iF~~f~~~~~~~--------~G~GLGL~Ivk~iv~~~gG~i~v~s~~------~-~Gt~f~i~lp~~~~ 481 (485)
T PRK10815 425 RELIFDRGQRADTLR--------PGQGLGLSVAREITEQYEGKISAGDSP------L-GGARMEVIFGRQHS 481 (485)
T ss_pred HHHHhCCcccCCCCC--------CCcchhHHHHHHHHHHcCCEEEEEECC------C-CEEEEEEEEcCCCC
Confidence 999999999864222 399999999999999999999999975 5 49999999998643
No 21
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.96 E-value=7.6e-28 Score=286.81 Aligned_cols=228 Identities=17% Similarity=0.191 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Q 006963 303 QSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEET 382 (623)
Q Consensus 303 q~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~ 382 (623)
+..+.+.+|+++++|||||||++|.++++++.+.. ..+..+++++.|..++++|.++++++.+...+...
T Consensus 288 ~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~--------- 357 (919)
T PRK11107 288 EAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP-LTPTQRDYLQTIERSANNLLAIINDILDFSKLEAG--------- 357 (919)
T ss_pred HHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 34444578999999999999999999999887543 34556788999999999999999998553210000
Q ss_pred HhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHH
Q 006963 383 LKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462 (623)
Q Consensus 383 l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~ 462 (623)
.+. ....++++.+++++++..
T Consensus 358 -----------------------------------------------------~~~------~~~~~~~l~~~l~~~~~~ 378 (919)
T PRK11107 358 -----------------------------------------------------KLV------LENIPFSLRETLDEVVTL 378 (919)
T ss_pred -----------------------------------------------------CcE------EEEeecCHHHHHHHHHHH
Confidence 000 124679999999999999
Q ss_pred HHHHhhhcCCeEEEEecC-CceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEE--ecCC--eEEEEEeeCCCCCC
Q 006963 463 VRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA--APAG--DALVVIDDDGPDMH 537 (623)
Q Consensus 463 ~~~~a~~~~~~i~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~--~~~~--~v~I~V~D~G~GI~ 537 (623)
+...+..+++.+.+...+ .+..+.+|+.+|.||+.|||+||+||++. |.|.|.+.. ..++ .+.|.|.|+|+||+
T Consensus 379 ~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~-g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~ 457 (919)
T PRK11107 379 LAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTES-GNIDILVELRALSNTKVQLEVQIRDTGIGIS 457 (919)
T ss_pred HHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEEEecCCCeeEEEEEEEEeCCCcC
Confidence 999998888888887533 34568999999999999999999999986 445554432 1222 48899999999999
Q ss_pred hhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 538 YMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 538 ~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
++.++++|+|||+++.+..... .|+||||+|||++++.|||+|++.|.+ +. ||+|++.||...
T Consensus 458 ~~~~~~if~~f~~~~~~~~~~~----~g~GLGL~i~~~i~~~~gG~i~v~s~~------~~-Gt~f~i~lp~~~ 520 (919)
T PRK11107 458 ERQQSQLFQAFRQADASISRRH----GGTGLGLVITQKLVNEMGGDISFHSQP------NR-GSTFWFHLPLDL 520 (919)
T ss_pred HHHHHHHhhhhccCCCCCCCCC----CCcchhHHHHHHHHHHhCCEEEEEecC------CC-CEEEEEEEEecc
Confidence 9999999999998765433222 399999999999999999999999986 64 999999999864
No 22
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.96 E-value=8.2e-27 Score=256.95 Aligned_cols=236 Identities=17% Similarity=0.191 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 006963 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (623)
Q Consensus 294 l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~ 373 (623)
+.+....+++......++++.++||+||||+.|.+..+.+...... ...+.+..+..+.+++.++++++.....
T Consensus 226 ~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~--~~~~~l~~~~~~~~~l~~li~~l~~l~~---- 299 (466)
T PRK10549 226 FNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK--FTPESVASLQAEVGTLTKLVDDLHQLSL---- 299 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 3344444555555668899999999999999999999998765433 2345667788888888888887744211
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHH
Q 006963 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (623)
Q Consensus 374 ~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ 453 (623)
. .. . .+. ...+++++.
T Consensus 300 ----~--------~~---------------~-------------------------------~~~------~~~~~~~~~ 315 (466)
T PRK10549 300 ----S--------DE---------------G-------------------------------ALA------YRKTPVDLV 315 (466)
T ss_pred ----h--------cC---------------C-------------------------------Ccc------cccCCCCHH
Confidence 0 00 0 000 124678999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCC
Q 006963 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (623)
Q Consensus 454 ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G 533 (623)
++++.++..++..+..+++.+++.. +....+.+|+..+.|++.|||+||++|++.+|.|.|.+. ..++.+.|.|.|+|
T Consensus 316 ~~l~~~~~~~~~~~~~~~i~i~~~~-~~~~~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~-~~~~~~~i~V~D~G 393 (466)
T PRK10549 316 PLLEVAGGAFRERFASRGLTLQLSL-PDSATVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAE-QRDKTLRLTFADSA 393 (466)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEEec-CCCcEEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEE-EcCCEEEEEEEecC
Confidence 9999999999988877777777764 345677899999999999999999999999899999998 56778999999999
Q ss_pred CCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 534 ~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
+||+++.++++|+|||+++..... ...|+||||+||+++++.|||++++.+.+ + +||+|+|.||...+
T Consensus 394 ~Gi~~e~~~~lf~~~~~~~~~~~~----~~~g~GlGL~iv~~i~~~~~G~l~~~s~~------~-~G~~~~i~lP~~~~ 461 (466)
T PRK10549 394 PGVSDEQLQKLFERFYRTEGSRNR----ASGGSGLGLAICLNIVEAHNGRIIAAHSP------F-GGVSITVELPLERD 461 (466)
T ss_pred CCcCHHHHHHhccCcccCCCCcCC----CCCCCcHHHHHHHHHHHHcCCEEEEEECC------C-CeEEEEEEccCCCC
Confidence 999999999999999997644322 12389999999999999999999999975 5 49999999998764
No 23
>PRK09835 sensor kinase CusS; Provisional
Probab=99.96 E-value=1.6e-26 Score=255.56 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006963 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (623)
Q Consensus 293 ~l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~ 372 (623)
.+.+....+++...++.+++++++|||||||+.|.+.++.+...........+.+..+..+..++.++++++.....
T Consensus 247 ~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~--- 323 (482)
T PRK09835 247 SFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQ--- 323 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34455555666667778899999999999999999999887654433334455566667777777777777744311
Q ss_pred hhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeH
Q 006963 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (623)
Q Consensus 373 ~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L 452 (623)
. . ... ......++++
T Consensus 324 ~-------------~---------------------------------------------------~~~-~~~~~~~~~l 338 (482)
T PRK09835 324 A-------------D---------------------------------------------------NNQ-LIPEKKMLDL 338 (482)
T ss_pred h-------------c---------------------------------------------------CCC-CCCCceeecH
Confidence 0 0 000 0012467999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeC
Q 006963 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532 (623)
Q Consensus 453 ~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~ 532 (623)
.++++.++..+...+..+++.+.+. ..+..+.+|+..|.+|+.|||+||++|++.++.|.|.+. ..++.+.|.|.|+
T Consensus 339 ~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~-~~~~~~~i~v~d~ 415 (482)
T PRK09835 339 ADEVGKVFDFFEAWAEERGVELRFV--GDPCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQ-EVDHQVQLVVENP 415 (482)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEe--CCCcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE-EeCCEEEEEEEEC
Confidence 9999999999998886666665554 345678999999999999999999999998888999987 5567799999999
Q ss_pred CCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 533 G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
|+||+++.++++|+|||+.+..... ...|+||||+||+++++.|||+|++.|. + +||+|+|.||..
T Consensus 416 G~gi~~~~~~~if~~f~~~~~~~~~----~~~g~GlGL~i~~~i~~~~~g~i~~~s~-------~-~g~~~~i~lP~~ 481 (482)
T PRK09835 416 GTPIAPEHLPRLFDRFYRVDPSRQR----KGEGSGIGLAIVKSIVVAHKGTVAVTSD-------A-RGTRFVISLPRL 481 (482)
T ss_pred CCCcCHHHHHHHhCCcccCCCCCCC----CCCCcchHHHHHHHHHHHCCCEEEEEEC-------C-CcEEEEEEeeCC
Confidence 9999999999999999997543321 1249999999999999999999999985 3 499999999964
No 24
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.96 E-value=8.7e-27 Score=255.10 Aligned_cols=231 Identities=18% Similarity=0.189 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 006963 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (623)
Q Consensus 294 l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~ 373 (623)
+.+....+++...+.+++.++++|||||||++|.++++.+.......+...+.++.+..+.+++..+++++..... .
T Consensus 227 ~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~---~ 303 (457)
T TIGR01386 227 FNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLAR---A 303 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 3444455556666667889999999999999999999887654333334455666777777788777777743211 0
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHH
Q 006963 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (623)
Q Consensus 374 ~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ 453 (623)
. . .......+++++.
T Consensus 304 --~-----------~----------------------------------------------------~~~~~~~~~~~~~ 318 (457)
T TIGR01386 304 --D-----------N----------------------------------------------------GQLALERVRLDLA 318 (457)
T ss_pred --h-----------c----------------------------------------------------ccccccccccCHH
Confidence 0 0 0000124679999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCC
Q 006963 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (623)
Q Consensus 454 ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G 533 (623)
+++++++..+...+..+++.+.+. . ...+.+|+..|.+++.|||+||+||++.++.|.|.+. ..++.+.|+|.|+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~i~~~~~--~-~~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~-~~~~~~~i~v~D~G 394 (457)
T TIGR01386 319 AELAKVAEYFEPLAEERGVRIRVE--G-EGLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIE-RRSDEVRVSVSNPG 394 (457)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEec--C-CceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEE-ecCCEEEEEEEeCC
Confidence 999999999988887666655543 2 2678999999999999999999999988889999998 56678999999999
Q ss_pred CCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEec
Q 006963 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608 (623)
Q Consensus 534 ~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP 608 (623)
+||+++.+.++|++||+++..... ...|+||||+||++++++|||+|++.+ + +. ||+|+++||
T Consensus 395 ~g~~~~~~~~~~~~~~~~~~~~~~----~~~g~GlGL~i~~~~~~~~~G~~~~~~-~------~~-G~~~~~~~P 457 (457)
T TIGR01386 395 PGIPPEHLSRLFDRFYRVDPARSN----SGEGTGLGLAIVRSIMEAHGGRASAES-P------DG-KTRFILRFP 457 (457)
T ss_pred CCCCHHHHHHhccccccCCcccCC----CCCCccccHHHHHHHHHHCCCEEEEEe-C------CC-ceEEEEecC
Confidence 999999999999999997644322 234999999999999999999999999 5 64 999999998
No 25
>PRK10337 sensor protein QseC; Provisional
Probab=99.96 E-value=7.3e-27 Score=256.58 Aligned_cols=226 Identities=15% Similarity=0.127 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 006963 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKAN 374 (623)
Q Consensus 295 ~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~ 374 (623)
.+....+++...++++++++++|||||||+.|.+.++.+.......+.....++.+....+++.++++++.....
T Consensus 224 n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r----- 298 (449)
T PRK10337 224 NQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSR----- 298 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 333444555566667899999999999999999988876543333333445677888888999999998854311
Q ss_pred hhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHH
Q 006963 375 IVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSD 454 (623)
Q Consensus 375 I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~e 454 (623)
. .. .......+++++.+
T Consensus 299 ---~-----------------------------------------------------------~~-~~~~~~~~~~~l~~ 315 (449)
T PRK10337 299 ---L-----------------------------------------------------------DS-LDNLQDVAEIPLED 315 (449)
T ss_pred ---c-----------------------------------------------------------CC-CCCCCCCcccCHHH
Confidence 0 00 00011356799999
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCC
Q 006963 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534 (623)
Q Consensus 455 ll~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~ 534 (623)
+++.++..+...+..+++.+.+..++....+.+|+..+.+++.|||+||+||++.++.|.|.+.. ..|+|.|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~-----~~i~i~D~G~ 390 (449)
T PRK10337 316 LLQSAVMDIYHTAQQAGIDVRLTLNAHPVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA-----RNFTVRDNGP 390 (449)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCCCceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe-----eEEEEEECCC
Confidence 99999999988888788888887655556789999999999999999999999988899988752 2699999999
Q ss_pred CCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 535 DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 535 GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
||+++.++++|+|||+..... ..|+||||+||++++++|||+|++.+.+ + +|++|+|.|
T Consensus 391 Gi~~~~~~~if~~f~~~~~~~-------~~g~GlGL~iv~~i~~~~gg~l~~~s~~------~-~G~~~~i~~ 449 (449)
T PRK10337 391 GVTPEALARIGERFYRPPGQE-------ATGSGLGLSIVRRIAKLHGMNVSFGNAP------E-GGFEAKVSW 449 (449)
T ss_pred CCCHHHHHHhcccccCCCCCC-------CCccchHHHHHHHHHHHcCCEEEEEecC------C-CeEEEEEeC
Confidence 999999999999999864221 2399999999999999999999999875 5 499999875
No 26
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.96 E-value=4.7e-27 Score=288.01 Aligned_cols=232 Identities=19% Similarity=0.214 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 006963 298 SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR 377 (623)
Q Consensus 298 ~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~ 377 (623)
...+.+....+.+++++++|||||||++|.+++++|.......+...+.++.+...++++.++++++.+...+..
T Consensus 702 ~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~----- 776 (1197)
T PRK09959 702 RNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIES----- 776 (1197)
T ss_pred HHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence 334444555678999999999999999999999998765444444556778888889999999988855321000
Q ss_pred hhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHH
Q 006963 378 YNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLG 457 (623)
Q Consensus 378 ~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~ 457 (623)
.......+++++.++++
T Consensus 777 ---------------------------------------------------------------~~~~~~~~~~~l~~~i~ 793 (1197)
T PRK09959 777 ---------------------------------------------------------------GNYQLQPQWVDIPTLVQ 793 (1197)
T ss_pred ---------------------------------------------------------------CCceeeeeeeCHHHHHH
Confidence 00001256799999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEe-cCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEE--Eec--CCeEEEEEeeC
Q 006963 458 DLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA--AAP--AGDALVVIDDD 532 (623)
Q Consensus 458 ~ll~~~~~~a~~~~~~i~l~~-~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~--~~~--~~~v~I~V~D~ 532 (623)
+++..+...+..+++.+.+.. .+....+.+|+..|.||+.|||+||+||++.| .|.|.+. ... ...+.|.|.|+
T Consensus 794 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~i~V~D~ 872 (1197)
T PRK09959 794 NTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEG-AVKITTSLGHIDDNHAVIKMTIMDS 872 (1197)
T ss_pred HHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEEeeecCCceEEEEEEEEc
Confidence 999999998887788877663 24556799999999999999999999999864 4444432 112 23478999999
Q ss_pred CCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 533 G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|+||+++.++++|+||+++.... ...|+||||+|||+|++.|||+|++.|.+ +. ||+|+|+||...
T Consensus 873 G~Gi~~~~~~~iF~~f~~~~~~~------~~~G~GLGL~i~~~iv~~~gG~i~v~s~~------~~-Gt~f~i~lP~~~ 938 (1197)
T PRK09959 873 GSGLSQEEQQQLFKRYSQTSAGR------QQTGSGLGLMICKELIKNMQGDLSLESHP------GI-GTTFTITIPVEI 938 (1197)
T ss_pred CCCCCHHHHHHhhccccccccCC------CCCCcCchHHHHHHHHHHcCCEEEEEeCC------CC-cEEEEEEEEccc
Confidence 99999999999999999864321 12499999999999999999999999986 54 999999999854
No 27
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.95 E-value=2.1e-26 Score=251.63 Aligned_cols=220 Identities=19% Similarity=0.282 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 006963 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (623)
Q Consensus 294 l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~ 373 (623)
+.+....+++..+++..++++++|||||||+.|+.+++++... .....+.+..+.+++.++++++.....
T Consensus 215 ~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------~~~~~~~i~~~~~~~~~~i~~~l~~~r---- 284 (435)
T PRK09467 215 FNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------DGYLAESINKDIEECNAIIEQFIDYLR---- 284 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3344444555566677899999999999999999888776321 233456677788888888888744211
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHH
Q 006963 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (623)
Q Consensus 374 ~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ 453 (623)
. .......++++.
T Consensus 285 ----~---------------------------------------------------------------~~~~~~~~~~l~ 297 (435)
T PRK09467 285 ----T---------------------------------------------------------------GQEMPMEMADLN 297 (435)
T ss_pred ----c---------------------------------------------------------------cCCCCccccCHH
Confidence 0 000124578999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCC
Q 006963 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (623)
Q Consensus 454 ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G 533 (623)
+++.+++.... ..+..+.+........+.+|+..|.+++.||++||+||+ ++.|.|.+. ..++.+.|+|.|+|
T Consensus 298 ~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~l~~il~NLl~NA~k~~--~~~i~i~~~-~~~~~~~i~V~D~G 370 (435)
T PRK09467 298 ALLGEVIAAES----GYEREIETALQPGPIEVPMNPIAIKRALANLVVNAARYG--NGWIKVSSG-TEGKRAWFQVEDDG 370 (435)
T ss_pred HHHHHHHHHhh----hcCCeEEEecCCCCceEEECHHHHHHHHHHHHHHHHHhC--CCeEEEEEE-ecCCEEEEEEEecC
Confidence 99999887665 245666666544555899999999999999999999997 467888887 55677999999999
Q ss_pred CCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 534 ~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
+||+++..+++|+||++++...+ ..|+||||+||+++++.|||+|++.+.+ + +|++|+|+||..
T Consensus 371 ~Gi~~~~~~~~~~~f~~~~~~~~------~~g~GlGL~iv~~i~~~~~g~l~i~~~~------~-~G~~~~i~lp~~ 434 (435)
T PRK09467 371 PGIPPEQLKHLFQPFTRGDSARG------SSGTGLGLAIVKRIVDQHNGKVELGNSE------E-GGLSARAWLPLT 434 (435)
T ss_pred CCcCHHHHHHhcCCcccCCCCCC------CCCeehhHHHHHHHHHHCCCEEEEEECC------C-CcEEEEEEEeCC
Confidence 99999999999999998753321 2499999999999999999999999875 4 599999999975
No 28
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.95 E-value=4.6e-26 Score=264.48 Aligned_cols=233 Identities=17% Similarity=0.182 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 006963 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (623)
Q Consensus 294 l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~ 373 (623)
+.+....+++...+..++.+.++||+||||+.|.+..+++.... ..+...++++.+....+++.++++++.....+..
T Consensus 471 fn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~-~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~- 548 (703)
T TIGR03785 471 FAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQA-LEQEKQKYLERAREGTERLSMILNNMSEATRLEQ- 548 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 34444556666666788999999999999999999999886542 2334456778888888888888888854321000
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHH
Q 006963 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (623)
Q Consensus 374 ~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ 453 (623)
.......+++++.
T Consensus 549 -------------------------------------------------------------------~~~~~~~~~~dl~ 561 (703)
T TIGR03785 549 -------------------------------------------------------------------AIQSAEVEDFDLS 561 (703)
T ss_pred -------------------------------------------------------------------ccccccceeecHH
Confidence 0001135789999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCC
Q 006963 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (623)
Q Consensus 454 ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G 533 (623)
++++.++..+...+..++ +.+.....+..+.+|+..|.+++.|||+||+||++.++.|.|.+. ..++.+.|.|.|+|
T Consensus 562 ~ll~~~i~~~~~~~~~~~--i~l~i~~~~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~-~~~~~v~I~V~D~G 638 (703)
T TIGR03785 562 EVLSGCMQGYQMTYPPQR--FELNIPETPLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLS-QNKSHALLTVSNEG 638 (703)
T ss_pred HHHHHHHHHHHHHhhcCC--EEEEecCCCeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEE-EcCCEEEEEEEEcC
Confidence 999999999998886544 444444455689999999999999999999999998899999987 56678999999999
Q ss_pred CCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEec
Q 006963 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608 (623)
Q Consensus 534 ~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP 608 (623)
+||+++.++++|+||++.+..... ...|+||||+|||+|++.|||+|.+.+.. +.+|++|+|+||
T Consensus 639 ~GI~~e~~~~IFe~F~t~~~~~~~----~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~------~g~Gt~f~I~LP 703 (703)
T TIGR03785 639 PPLPEDMGEQLFDSMVSVRDQGAQ----DQPHLGLGLYIVRLIADFHQGRIQAENRQ------QNDGVVFRISLP 703 (703)
T ss_pred CCCCHHHHHHHhCCCeecCCCCCC----CCCCccHHHHHHHHHHHHcCCEEEEEECC------CCCeEEEEEEeC
Confidence 999999999999999986532221 12389999999999999999999999875 435999999998
No 29
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=2.3e-26 Score=244.00 Aligned_cols=208 Identities=20% Similarity=0.223 Sum_probs=165.1
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~ 387 (623)
.+++++.++|||||||++|.++.+++.+... ++...+++..+..+++++.++++++...
T Consensus 130 ~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~-~~~~~~~~~~i~~~~~~l~~lv~~l~~~-------------------- 188 (348)
T PRK11073 130 ARDLVRGLAHEIKNPLGGLRGAAQLLSKALP-DPALTEYTKVIIEQADRLRNLVDRLLGP-------------------- 188 (348)
T ss_pred HHHHHHhhhHhhcChHHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 3678999999999999999999999876543 3445678888888999999888887320
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHh
Q 006963 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (623)
Q Consensus 388 ~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a 467 (623)
.+ .....++++..+++.+...+....
T Consensus 189 ----------------------------------------------------~~--~~~~~~~~l~~~~~~~~~~~~~~~ 214 (348)
T PRK11073 189 ----------------------------------------------------QR--PGTHVTESIHKVAERVVQLVSLEL 214 (348)
T ss_pred ----------------------------------------------------cC--CCCCccccHHHHHHHHHHHHhhhc
Confidence 00 012345788999998888776554
Q ss_pred hhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhc-CCCCeEEEEEEEec---------CCeEEEEEeeCCCCCC
Q 006963 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT-QVGGKVEIVSAAAP---------AGDALVVIDDDGPDMH 537 (623)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t-~~gg~I~I~~~~~~---------~~~v~I~V~D~G~GI~ 537 (623)
. +++.+.+...+....+.+|+..|.+|+.||++||++|+ +.++.|.|.+.... ...+.|.|.|+|+||+
T Consensus 215 ~-~~i~i~~~~~~~~~~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~ 293 (348)
T PRK11073 215 P-DNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIP 293 (348)
T ss_pred c-CCcEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCC
Confidence 3 45666665444455789999999999999999999998 67788888764211 1136799999999999
Q ss_pred hhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 538 YMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 538 ~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
++..+++|+|||+++. .|+||||+|||+++++|||+|++.|.+ +||+|+|+||.
T Consensus 294 ~~~~~~iF~~~~~~~~----------~g~GlGL~i~~~iv~~~gG~i~~~s~~--------~~~~f~i~lP~ 347 (348)
T PRK11073 294 PHLQDTLFYPMVSGRE----------GGTGLGLSIARNLIDQHSGKIEFTSWP--------GHTEFSVYLPI 347 (348)
T ss_pred HHHHhhccCCcccCCC----------CCccCCHHHHHHHHHHcCCeEEEEecC--------CceEEEEEEec
Confidence 9999999999998631 299999999999999999999999864 36999999996
No 30
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=1.5e-25 Score=246.14 Aligned_cols=232 Identities=18% Similarity=0.234 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006963 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (623)
Q Consensus 293 ~l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~ 372 (623)
.+.+....+++...++.+++++++|||||||+.|+....++...... ...+..+..+.+++.++++++.....
T Consensus 228 ~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~l~~~i~~l~~~~~--- 300 (461)
T PRK09470 228 SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGE----SKELERIETEAQRLDSMINDLLVLSR--- 300 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34455556666667778899999999999999999988877543221 23456778888999999988854311
Q ss_pred hhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeH
Q 006963 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (623)
Q Consensus 373 ~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L 452 (623)
. .. ......+.+++
T Consensus 301 -----~-----------------------------------------------------------~~--~~~~~~~~~~l 314 (461)
T PRK09470 301 -----N-----------------------------------------------------------QQ--KNHLERETFKA 314 (461)
T ss_pred -----h-----------------------------------------------------------hc--ccccccceecH
Confidence 0 00 00112467999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeC
Q 006963 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532 (623)
Q Consensus 453 ~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~ 532 (623)
.+++++++..+...+...++.+++...+....+.+|+..|.+++.||++||++|++ +.|.|.+. ..++.+.|+|.|+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~nli~NA~~~~~--~~i~i~~~-~~~~~~~i~V~D~ 391 (461)
T PRK09470 315 NSLWSEVLEDAKFEAEQMGKSLTVSAPPGPWPINGNPNALASALENIVRNALRYSH--TKIEVAFS-VDKDGLTITVDDD 391 (461)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEecCCcceEEEECHHHHHHHHHHHHHHHHHhCC--CcEEEEEE-EECCEEEEEEEEC
Confidence 99999999988877766778888774556678999999999999999999999986 45777776 4567899999999
Q ss_pred CCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 533 GPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 533 G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|+||+++.++++|+|||+.+...... ..|+||||+||+++++.|||++.+.+.+ + +||+|+|+||...
T Consensus 392 G~Gi~~~~~~~if~~~~~~~~~~~~~----~~g~GlGL~iv~~~v~~~~G~l~~~s~~------~-~Gt~~~i~lp~~~ 459 (461)
T PRK09470 392 GPGVPEEEREQIFRPFYRVDEARDRE----SGGTGLGLAIVENAIQQHRGWVKAEDSP------L-GGLRLTIWLPLYK 459 (461)
T ss_pred CCCCCHHHHHHhcCCCccCCcccCCC----CCCcchhHHHHHHHHHHCCCEEEEEECC------C-CeEEEEEEeeCCC
Confidence 99999999999999999875333221 2389999999999999999999999875 5 4999999999854
No 31
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.95 E-value=7.4e-26 Score=235.91 Aligned_cols=219 Identities=19% Similarity=0.221 Sum_probs=177.3
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHM-KRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l-~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i 386 (623)
+.++++.++|+|||||+.|.++.++|.... ...+...++++.|....+++.++++++.......
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~--------------- 178 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLE--------------- 178 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 356889999999999999999999887653 2233445667888889999999998885432100
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHH
Q 006963 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (623)
Q Consensus 387 ~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~ 466 (623)
........+++++.+++..++..+...
T Consensus 179 -----------------------------------------------------~~~~~~~~~~~~l~~~i~~~~~~~~~~ 205 (333)
T TIGR02966 179 -----------------------------------------------------SAASPLEDEPVDMPALLDHLRDEAEAL 205 (333)
T ss_pred -----------------------------------------------------cCCccccccccCHHHHHHHHHHHHHHH
Confidence 000112356799999999999999999
Q ss_pred hhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcC
Q 006963 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLT 546 (623)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFe 546 (623)
+..+++.+.+.. .....+.+|+..|.+|+.|||.||++|++.++.|.|.+. ..++.+.|.|.|+|+||+++.++++|+
T Consensus 206 ~~~~~i~i~~~~-~~~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~-~~~~~~~i~i~d~G~gi~~~~~~~if~ 283 (333)
T TIGR02966 206 SQGKNHQITFEI-DGGVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWR-RDGGGAEFSVTDTGIGIAPEHLPRLTE 283 (333)
T ss_pred HHHcCcEEEEcC-CCCceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEE-EcCCEEEEEEEecCCCCCHHHHhhhcc
Confidence 887778888875 556789999999999999999999999998899999987 556779999999999999999999999
Q ss_pred CCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 547 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 547 pF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
+||+.+..... ...|+||||++|++++++|||+|++.+.+ +. ||+|+|+|
T Consensus 284 ~~~~~~~~~~~----~~~g~glGL~~~~~~~~~~gG~i~~~s~~------~~-Gt~~~i~l 333 (333)
T TIGR02966 284 RFYRVDKSRSR----DTGGTGLGLAIVKHVLSRHHARLEIESEL------GK-GSTFSFIF 333 (333)
T ss_pred CceecCccccc----CCCCCcccHHHHHHHHHHCCCEEEEEecC------CC-CeEEEEEC
Confidence 99975432221 12389999999999999999999999975 54 99999985
No 32
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-26 Score=246.74 Aligned_cols=235 Identities=17% Similarity=0.167 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhh--hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006963 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH--MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370 (623)
Q Consensus 293 ~l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~--l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l 370 (623)
.+.+.+..|+++....+.|...++|+||+||..|.+|+++|..+ -..+++..+.+..+.+...++.++++++..+..
T Consensus 509 ela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~- 587 (750)
T COG4251 509 ELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSK- 587 (750)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh-
Confidence 55666677788888889999999999999999999999999988 455677788888888888888888888843211
Q ss_pred hHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceee
Q 006963 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPC 450 (623)
Q Consensus 371 ~~~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v 450 (623)
+.+ .....++.
T Consensus 588 ------------------------------------------------------------------l~~---~~~~l~~t 598 (750)
T COG4251 588 ------------------------------------------------------------------LGL---TEAPLQPT 598 (750)
T ss_pred ------------------------------------------------------------------hcc---ccCCCCCc
Confidence 000 01125678
Q ss_pred eHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecCCeEEEEE
Q 006963 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG-GKVEIVSAAAPAGDALVVI 529 (623)
Q Consensus 451 ~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~g-g~I~I~~~~~~~~~v~I~V 529 (623)
|+.+++.+++..+.......+..+.+. + .+.+.+|+.++.|++.|||.||+||..++ ..|.|... ..+..+.+.|
T Consensus 599 d~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~-r~ed~~t~sV 674 (750)
T COG4251 599 DVQKVVDKVLLELSQRIADTGAEIRIA--P-LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAE-RQEDEWTFSV 674 (750)
T ss_pred chHHHHHHHHHhcccccccccceEEec--c-cceeecCHHHHHHHHHHHHhhheecCCCCCCceEEeee-ccCCceEEEe
Confidence 999999999999998887666666553 3 66899999999999999999999998766 78999987 5667899999
Q ss_pred eeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 530 DDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 530 ~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
.|+|.||++...++||..|.+...... ..|+|+||+|||+|++.|+|.|++++.+ |. |.||.+++|.
T Consensus 675 ~dng~Gi~~a~~~riF~iFqRl~s~~~------y~gtG~GL~I~kkI~e~H~G~i~vEs~~------gE-gsTF~f~lp~ 741 (750)
T COG4251 675 RDNGIGIDPAYFERIFVIFQRLHSRDE------YLGTGLGLAICKKIAERHQGRIWVESTP------GE-GSTFYFTLPV 741 (750)
T ss_pred cCCCCCcCHHHHHHHHHHHHhcCchhh------hcCCCccHHHHHHHHHHhCceEEEeecC------CC-ceeEEEEeec
Confidence 999999999999999999887642211 2489999999999999999999999987 76 9999999999
Q ss_pred CCCCC
Q 006963 610 PAPLS 614 (623)
Q Consensus 610 ~~~~~ 614 (623)
..++.
T Consensus 742 ~~~e~ 746 (750)
T COG4251 742 GGEEP 746 (750)
T ss_pred CCcCc
Confidence 87654
No 33
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=3.2e-25 Score=249.28 Aligned_cols=214 Identities=18% Similarity=0.270 Sum_probs=177.6
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~ 387 (623)
..++++.++|||||||+.|.++.+++... ..+....+.++.|..+.+++..+++++...
T Consensus 390 l~~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~-------------------- 448 (607)
T PRK11360 390 LGELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEF-------------------- 448 (607)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 46788999999999999999999998765 444556678888999999999988887432
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHh
Q 006963 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (623)
Q Consensus 388 ~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a 467 (623)
++......+++++.+++..++..+....
T Consensus 449 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (607)
T PRK11360 449 ----------------------------------------------------SRPRESQWQPVSLNALVEEVLQLFQTAG 476 (607)
T ss_pred ----------------------------------------------------hCCCcCccceecHHHHHHHHHHHHHHhh
Confidence 1111223578999999999999998776
Q ss_pred hhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCC
Q 006963 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547 (623)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFep 547 (623)
..+++.+.+...+....+.+|+..|.+++.||+.||++|...++.|.|.+....++.+.|.|.|+|+||+++.+.++|+|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~ 556 (607)
T PRK11360 477 VQARVDFETELDNELPPIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDP 556 (607)
T ss_pred hccCcEEEEEcCCCCCeEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCC
Confidence 66677777765555557899999999999999999999988888999988733333399999999999999999999999
Q ss_pred CcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 548 F~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|++.+ ..|+|+||++||++++.|||+|+++|.+ +. ||+|+|+||...
T Consensus 557 ~~~~~----------~~g~glGL~~~~~~~~~~~G~i~~~s~~------~~-Gt~~~i~lp~~~ 603 (607)
T PRK11360 557 FFTTK----------AKGTGLGLALSQRIINAHGGDIEVESEP------GV-GTTFTLYLPINP 603 (607)
T ss_pred ceeCC----------CCCCchhHHHHHHHHHHcCCEEEEEEcC------CC-ceEEEEEecCCC
Confidence 99753 1289999999999999999999999976 54 999999999854
No 34
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-25 Score=241.35 Aligned_cols=210 Identities=14% Similarity=0.194 Sum_probs=174.7
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE-----ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~-----~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l 383 (623)
.+...-++||||||||-|...++.|.+++.+.- .-++..+.|++|...+.++++++..
T Consensus 487 ~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~a----------------- 549 (712)
T COG5000 487 GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRA----------------- 549 (712)
T ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 566677999999999999999999998876532 2345678999999999999999933
Q ss_pred hhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHH
Q 006963 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (623)
Q Consensus 384 ~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~ 463 (623)
++|....+++..||.+++.+++..+
T Consensus 550 -------------------------------------------------------fARmP~p~~e~~dL~~ll~e~~~L~ 574 (712)
T COG5000 550 -------------------------------------------------------FARMPAPKLEKSDLRALLKEVSFLY 574 (712)
T ss_pred -------------------------------------------------------HhcCCCCCCCcchHHHHHHHHHHHH
Confidence 4444445678899999999999877
Q ss_pred HHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcC-------CCCeEEEEEEEecCCeEEEEEeeCCCCC
Q 006963 464 RPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ-------VGGKVEIVSAAAPAGDALVVIDDDGPDM 536 (623)
Q Consensus 464 ~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~-------~gg~I~I~~~~~~~~~v~I~V~D~G~GI 536 (623)
.... ..+.+..+...++++...|...|.|+|.|||.||.++-. +++.|+++.. ..++.+++.|.|||.|+
T Consensus 575 e~~~--~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~-~~~g~i~v~V~DNGkG~ 651 (712)
T COG5000 575 EIGN--DHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLD-DADGRIVVDVIDNGKGF 651 (712)
T ss_pred hccC--CCeEEEeecCCCceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEe-cCCCeEEEEEecCCCCC
Confidence 6433 356666666677889999999999999999999999732 2245777776 56788999999999999
Q ss_pred ChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 537 HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 537 ~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
|.+.+.++||||.+++. .||||||+|||+|+|.|||.|++.+.+ +.+|.++.|.||.
T Consensus 652 p~e~r~r~~EPYvTtr~----------KGTGLGLAiVKkIvEeHGG~leL~da~------d~~GA~i~i~fp~ 708 (712)
T COG5000 652 PRENRHRALEPYVTTRE----------KGTGLGLAIVKKIVEEHGGRLELHNAP------DFDGAMIRIKFPL 708 (712)
T ss_pred ChHHhhhhccCceeccc----------ccccccHHHHHHHHHhcCCeEEecCCC------CCCCcEEEEEccc
Confidence 99999999999998642 299999999999999999999998876 5569999999997
No 35
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.94 E-value=2.3e-24 Score=236.87 Aligned_cols=218 Identities=22% Similarity=0.265 Sum_probs=177.7
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcc
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~ 388 (623)
.++++.++||+||||+.|+++++++... ...+...+.++.+..+.+++..+++++..+..+.
T Consensus 257 ~~~~~~~~h~l~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~----------------- 318 (475)
T PRK11100 257 EQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRARFTGNILTQSARLQQLIDRLLELARLE----------------- 318 (475)
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 5678899999999999999999988763 2344556778888889999999998885432100
Q ss_pred cCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHhh
Q 006963 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (623)
Q Consensus 389 ~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a~ 468 (623)
.. .......++++.++++.++..+...+.
T Consensus 319 --------------------------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (475)
T PRK11100 319 --------------------------------------------------QR-QELEVLEPVALAALLEELVEAREAQAA 347 (475)
T ss_pred --------------------------------------------------cC-CCCccceeccHHHHHHHHHHHHHHHHH
Confidence 00 000124679999999999999998888
Q ss_pred hcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCC
Q 006963 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548 (623)
Q Consensus 469 ~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF 548 (623)
..++.+.+..+ +..+.+|...|.+++.|||.||++|+..++.|.|.+. ..++.+.|+|.|+|+||+++.+.++|++|
T Consensus 348 ~~~i~~~~~~~--~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~-~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~ 424 (475)
T PRK11100 348 AKGITLRLRPD--DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAE-VDGEQVALSVEDQGPGIPDYALPRIFERF 424 (475)
T ss_pred hCCceEEEeCC--CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEE-EcCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 77877777643 5678999999999999999999999988899999998 56678999999999999999999999999
Q ss_pred cccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 549 ~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
++...... ...|+||||+||++++++|||+|.+.|.+ + +||+|.|.||..
T Consensus 425 ~~~~~~~~-----~~~~~GlGL~i~~~~~~~~~G~i~i~s~~------~-~Gt~v~i~lp~~ 474 (475)
T PRK11100 425 YSLPRPAN-----GRKSTGLGLAFVREVARLHGGEVTLRNRP------E-GGVLATLTLPRH 474 (475)
T ss_pred ccCCCCCC-----CCCCcchhHHHHHHHHHHCCCEEEEEEcC------C-CeEEEEEEeeCC
Confidence 97632111 12489999999999999999999999975 5 499999999975
No 36
>PRK13557 histidine kinase; Provisional
Probab=99.93 E-value=3.1e-24 Score=239.65 Aligned_cols=216 Identities=18% Similarity=0.185 Sum_probs=166.7
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS----EISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~----~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l 383 (623)
...++..++||+||||+.|.++.+++....... ....+.++.|....+++..+++++...
T Consensus 163 l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~---------------- 226 (540)
T PRK13557 163 LGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAF---------------- 226 (540)
T ss_pred hhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 356788999999999999999999987654432 233456777777788888888877432
Q ss_pred hhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHH
Q 006963 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (623)
Q Consensus 384 ~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~ 463 (623)
++........+++..+++.+...+
T Consensus 227 --------------------------------------------------------~~~~~~~~~~~~l~~~i~~~~~~~ 250 (540)
T PRK13557 227 --------------------------------------------------------ARKQRLEGRVLNLNGLVSGMGELA 250 (540)
T ss_pred --------------------------------------------------------hCcCCCCCcccCHHHHHHHHHHHH
Confidence 111111245688999998877765
Q ss_pred HHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe--------------cCCeEEEEE
Q 006963 464 RPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA--------------PAGDALVVI 529 (623)
Q Consensus 464 ~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~--------------~~~~v~I~V 529 (623)
.... .+++.+.+...+....+.+|+..+.++|.||+.||++|++.++.|.|.+... .++.+.|.|
T Consensus 251 ~~~~-~~~~~i~~~~~~~~~~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (540)
T PRK13557 251 ERTL-GDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAV 329 (540)
T ss_pred HHhc-CCCeEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEE
Confidence 5433 2445555554444456889999999999999999999999888888876521 335689999
Q ss_pred eeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 530 DDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 530 ~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
.|+|+||+++.+.++|+|||+.+... .|+||||+|||++++.|||.|++.+.+ +. ||+|+|+||.
T Consensus 330 ~D~G~Gi~~~~~~~if~~~~~~~~~~--------~g~GlGL~i~~~~v~~~gG~i~~~s~~------~~-G~~f~i~lP~ 394 (540)
T PRK13557 330 TDTGSGMPPEILARVMDPFFTTKEEG--------KGTGLGLSMVYGFAKQSGGAVRIYSEV------GE-GTTVRLYFPA 394 (540)
T ss_pred EcCCCCCCHHHHHhccCCCcccCCCC--------CCCCccHHHHHHHHHHCCCEEEEEecC------CC-ceEEEEEeeC
Confidence 99999999999999999999864322 399999999999999999999999976 64 9999999998
Q ss_pred CC
Q 006963 610 PA 611 (623)
Q Consensus 610 ~~ 611 (623)
..
T Consensus 395 ~~ 396 (540)
T PRK13557 395 SD 396 (540)
T ss_pred CC
Confidence 54
No 37
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-23 Score=215.48 Aligned_cols=219 Identities=22% Similarity=0.317 Sum_probs=168.7
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 006963 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (623)
Q Consensus 307 q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i 386 (623)
....+++.++||+||||+++.++..++... ..+......+.+....+++..+++++.........
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~------------- 178 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG--LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAG------------- 178 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------
Confidence 368899999999999999999988855443 11113556666666777888777776432110000
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHH
Q 006963 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (623)
Q Consensus 387 ~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~ 466 (623)
. +.. .....+++..++.+++..+...
T Consensus 179 ----------------------------------------------------~-~~~-~~~~~~~l~~~~~~~~~~~~~~ 204 (336)
T COG0642 179 ----------------------------------------------------T-KLK-LLLELVDLAELLEEVVRLLAPL 204 (336)
T ss_pred ----------------------------------------------------C-ccc-cCCCCcCHHHHHHHHHHHHHHH
Confidence 0 000 0134567999999999999888
Q ss_pred hhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcC
Q 006963 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLT 546 (623)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFe 546 (623)
+....+.+.... +....+.+|...+.+++.|||+||++|++ ++.|.|.+. ..++.+.+.|.|+|+||+++.++++|+
T Consensus 205 ~~~~~~~~~~~~-~~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~-~~~~~i~i~V~D~G~Gi~~~~~~~if~ 281 (336)
T COG0642 205 AQEKGIELAVDL-PELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVR-QDDEQVTISVEDTGPGIPEEELERIFE 281 (336)
T ss_pred HHHcCCEEEEec-CCCceEeeCHHHHHHHHHHHHHHHhccCC-CCeEEEEEE-ecCCeEEEEEEcCCCCCCHHHHHHhcc
Confidence 765566665432 24668999999999999999999999999 889999997 444579999999999999999999999
Q ss_pred CCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 547 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 547 pF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
||++++...+ |+|+||+||+++++.|||.+.+.+.+ +. ||+|+++||....
T Consensus 282 ~~~~~~~~~~--------g~GlGL~i~~~~~~~~~g~i~~~~~~------~~-Gt~~~i~lP~~~~ 332 (336)
T COG0642 282 PFFRTDKSRS--------GTGLGLAIVKRIVELHGGTISVESEP------GK-GTTFTIRLPLAPA 332 (336)
T ss_pred CeeccCCCCC--------CCCccHHHHHHHHHHcCCEEEEEecC------CC-ceEEEEEEecccc
Confidence 9999753322 89999999999999999999999975 55 8999999999764
No 38
>PRK13560 hypothetical protein; Provisional
Probab=99.91 E-value=3.2e-23 Score=242.64 Aligned_cols=206 Identities=13% Similarity=0.162 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 006963 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (623)
Q Consensus 299 ~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~ 378 (623)
+.++++..++.+++++++|||||||++|.++++++...+.... ...++. ...+++..+...+...
T Consensus 596 ~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~l----------- 660 (807)
T PRK13560 596 EKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEE-AKCAFA---ESQDRICAMALAHEKL----------- 660 (807)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHH-HHHHHH---HHHHHHHHHHHHHHHH-----------
Confidence 4456666778999999999999999999999998876654322 222222 2222222222111110
Q ss_pred hHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHH
Q 006963 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (623)
Q Consensus 379 ~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ 458 (623)
. ......++++.++++.
T Consensus 661 -------------------------------------------------------------~--~~~~~~~~~l~~~i~~ 677 (807)
T PRK13560 661 -------------------------------------------------------------Y--QSEDLADIDFLDYIES 677 (807)
T ss_pred -------------------------------------------------------------h--ccccchhccHHHHHHH
Confidence 0 0012456899999999
Q ss_pred HHHHHHHHhhhcCCeEEEEecCCce-EEEeCHHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEeeCCC
Q 006963 459 LFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGP 534 (623)
Q Consensus 459 ll~~~~~~a~~~~~~i~l~~~~~~~-~V~~D~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G~ 534 (623)
++..+...+......+.+....... ....+...+.+||.||+.||+||+.++ +.|.|.+....++.+.|.|.|||+
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~ 757 (807)
T PRK13560 678 LTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGI 757 (807)
T ss_pred HHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCC
Confidence 9998887765555556665433332 333445578899999999999998543 688888874436789999999999
Q ss_pred CCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 535 DMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 535 GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|||++.. |. .|.||||+|||+|+++|||+|+|.| + +||+|+|+||..+
T Consensus 758 GI~~~~~------~~--------------~~~gLGLai~~~iv~~~gG~I~v~S--------~-~Gt~F~i~lP~~~ 805 (807)
T PRK13560 758 GLPAGFD------FR--------------AAETLGLQLVCALVKQLDGEIALDS--------R-GGARFNIRFPMSP 805 (807)
T ss_pred cCCcccc------cc--------------ccCCccHHHHHHHHHHcCCEEEEEc--------C-CceEEEEEecCCC
Confidence 9998631 11 1788999999999999999999998 4 4999999999865
No 39
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.89 E-value=1.5e-21 Score=218.73 Aligned_cols=128 Identities=25% Similarity=0.158 Sum_probs=102.5
Q ss_pred HhhhcCCeEEEEecCCce--EEEeCHHHHHHHHHHHHHHHHhhcC--CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhH
Q 006963 466 LAHMQQRQVELSELSQSL--LVAVEEPALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541 (623)
Q Consensus 466 ~a~~~~~~i~l~~~~~~~--~V~~D~~~L~qVL~NLL~NAlk~t~--~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~ 541 (623)
.+...++.+.+....... ....+...|.+|+.||++||++|+. .++.|.|.+. ..++.+.|.|.|+|+||+++.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~-~~~~~~~i~V~D~G~gi~~~~~ 484 (542)
T PRK11086 406 RARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLH-YRNGWLHCEVSDDGPGIAPDEI 484 (542)
T ss_pred HHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE-EcCCEEEEEEEECCCCCCHHHH
Confidence 344466776665322111 1223345799999999999999963 4578999887 5667899999999999999999
Q ss_pred hhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 542 MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 542 ~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
+++|+|||+.+ ..|+||||+|||+++++|||+|++.+.+ +. ||+|+|+||...
T Consensus 485 ~~iF~~~~~~~----------~~g~GlGL~iv~~iv~~~~G~i~v~s~~------~~-G~~f~i~lP~~~ 537 (542)
T PRK11086 485 DAIFDKGYSTK----------GSNRGVGLYLVKQSVENLGGSIAVESEP------GV-GTQFFVQIPWDG 537 (542)
T ss_pred HHHHhCCCccC----------CCCCcCcHHHHHHHHHHcCCEEEEEeCC------CC-cEEEEEEEeCCC
Confidence 99999999854 1299999999999999999999999975 54 999999999864
No 40
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.89 E-value=4.8e-21 Score=215.96 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=105.7
Q ss_pred hhhcCCeEEEEecC--CceEEEeCHHHHHHHHHHHHHHHHhhc---CC-CCeEEEEEEEecCCeEEEEEeeCCCCCChhh
Q 006963 467 AHMQQRQVELSELS--QSLLVAVEEPALRQALSNLIEGALMRT---QV-GGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540 (623)
Q Consensus 467 a~~~~~~i~l~~~~--~~~~V~~D~~~L~qVL~NLL~NAlk~t---~~-gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~ 540 (623)
+.+.++.+.+.... ..+....|+..|.+++.|||+||++|. +. ++.|.|.+. ..++.+.|.|.|+|+||+++.
T Consensus 406 ~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~-~~~~~~~i~V~D~G~Gi~~~~ 484 (545)
T PRK15053 406 ARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLS-DEGDDVVIEVADQGCGVPESL 484 (545)
T ss_pred HHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEE-ECCCEEEEEEEeCCCCcCHHH
Confidence 33456666664221 224567799999999999999999994 33 368888887 566789999999999999999
Q ss_pred HhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 541 QMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 541 ~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
++++|++||+++... ..|+||||+|||+++++|||+|++.|.+ +. ||+|+|.||....
T Consensus 485 ~~~iF~~~~~tk~~~-------~~g~GlGL~ivk~iv~~~~G~i~v~s~~------~~-Gt~f~i~lP~~~~ 542 (545)
T PRK15053 485 RDKIFEQGVSTRADE-------PGEHGIGLYLIASYVTRCGGVITLEDND------PC-GTLFSIFIPKVKP 542 (545)
T ss_pred HHHHhCCCCCCCCCC-------CCCceeCHHHHHHHHHHcCCEEEEEECC------CC-eEEEEEEECCCCC
Confidence 999999999864221 1279999999999999999999999986 54 9999999998653
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.88 E-value=9.5e-21 Score=212.01 Aligned_cols=191 Identities=15% Similarity=0.175 Sum_probs=144.6
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcc
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~ 388 (623)
+++.+.+.||+||||++|++.++++.+....++...+.++.|.+.+.++.+.++++...
T Consensus 303 ~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~--------------------- 361 (495)
T PRK11644 303 RDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGR--------------------- 361 (495)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 45667788899999999999999876533333334566677777777777776666220
Q ss_pred cCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHhh
Q 006963 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (623)
Q Consensus 389 ~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a~ 468 (623)
......+.+++.+.+++++..+....
T Consensus 362 -----------------------------------------------------lr~~~l~~~~L~~~l~~l~~~l~~~~- 387 (495)
T PRK11644 362 -----------------------------------------------------LRPRQLDDLTLEQAIRSLMREMELED- 387 (495)
T ss_pred -----------------------------------------------------cCCcccccCCHHHHHHHHHHHHHHhh-
Confidence 00112456889999999998887554
Q ss_pred hcCCeEEEEe-cCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCC
Q 006963 469 MQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547 (623)
Q Consensus 469 ~~~~~i~l~~-~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFep 547 (623)
.++.++++. .+.......++..+.+++.|+++||+||++. +.|.|.+. .+++.+.++|.|||+||++++
T Consensus 388 -~~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~-~~I~I~l~-~~~~~i~l~V~DnG~Gi~~~~------- 457 (495)
T PRK11644 388 -RGIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHADA-SAVTLQGW-QQDERLMLVIEDDGSGLPPGS------- 457 (495)
T ss_pred -cCceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEE-EcCCEEEEEEEECCCCCCcCC-------
Confidence 455555552 2223345667788999999999999999876 68999887 566789999999999998641
Q ss_pred CcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 548 F~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
.|+|+||+++|+++++|||+|++.| + +||+|++.+|.
T Consensus 458 ----------------~~~GLGL~ivr~iv~~~GG~i~v~S--------~-~Gt~f~I~LP~ 494 (495)
T PRK11644 458 ----------------GQQGFGLRGMRERVTALGGTLTISC--------T-HGTRLSVSLPQ 494 (495)
T ss_pred ----------------CCCCCcHHHHHHHHHHcCCEEEEEc--------C-CCEEEEEEEeC
Confidence 1789999999999999999999988 3 49999999996
No 42
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.86 E-value=3.3e-20 Score=195.19 Aligned_cols=212 Identities=19% Similarity=0.240 Sum_probs=165.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhc--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMK--RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~--~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i 386 (623)
++.|..++|||..||+++..|.-...+.+. +.......++.|..-.+|+..+++.+.+.
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF------------------- 512 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQF------------------- 512 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 788889999999999999988644433332 23344555666666666666666666332
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCC--CceeeeHHHHHHHHHHHHH
Q 006963 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN--GIRPCNVSDVLGDLFEAVR 464 (623)
Q Consensus 387 ~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~--~~~~v~L~ell~~ll~~~~ 464 (623)
+|..++ ...|+++.+++..+.+.++
T Consensus 513 -----------------------------------------------------~Rk~s~~~~lqpV~L~~~v~~AweLl~ 539 (673)
T COG4192 513 -----------------------------------------------------ARKNSSDESLQPVRLNSVVEQAWELLQ 539 (673)
T ss_pred -----------------------------------------------------HhccCCCCCcccccHHHHHHHHHHHHH
Confidence 111111 2678999999999999998
Q ss_pred HHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecCCeEEEEEeeCCCCCChhhHhh
Q 006963 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG-GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543 (623)
Q Consensus 465 ~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~g-g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (623)
...+. +.+.+..+.+.++|.+|...++|||.||+-||++++... ..|.|.+...+++..+|.|.|||+|.|-+..++
T Consensus 540 ~khk~--rQ~~Li~ptD~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dk 617 (673)
T COG4192 540 TKHKR--RQIKLINPTDDLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDK 617 (673)
T ss_pred hhhhh--ccccccCCcccceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHH
Confidence 87744 555565566788999999999999999999999985543 577777764566779999999999999999999
Q ss_pred hcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 544 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 544 iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
+|.||.+.+.. |.||||+||..+|++|.|.+.+-|.- .+ +.++.+.|....
T Consensus 618 Ll~PFttsK~v----------gLGlGLSIsqSlmeqmqG~l~lAStL------t~-nA~ViL~f~v~~ 668 (673)
T COG4192 618 LLTPFTTSKEV----------GLGLGLSISQSLMEQMQGRLALASTL------TK-NAMVILEFQVDE 668 (673)
T ss_pred hcCCccccccc----------ccccchhHHHHHHHHhcCcchHhhhc------cc-CcEEEEEEeecc
Confidence 99999876422 99999999999999999999999875 54 899999887653
No 43
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.83 E-value=4.6e-18 Score=193.49 Aligned_cols=263 Identities=18% Similarity=0.167 Sum_probs=172.7
Q ss_pred CCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccCHHHHH
Q 006963 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (623)
Q Consensus 200 ~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~ 279 (623)
...+.+||..+...+|++.+..|.. . .|+.+++.
T Consensus 298 ~~~~~~~l~~~~~~~G~~~~~~~~~--------------------~--------------------------~l~~~~~~ 331 (569)
T PRK10600 298 GTTLKWRLSDKHGQYGILLATLPQG--------------------R--------------------------HLSHDQQQ 331 (569)
T ss_pred CceEEEEeecCCcceEEEEEEcCCC--------------------C--------------------------CCCHHHHH
Confidence 4688999999999999998762100 0 14557777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhHHHhHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHH
Q 006963 280 NAINICRSLAMAYVMDQKSMLLQQ-SSWQNNARMS-NLVEQIRGPLSSIQTLSKMLSLHMK-RSEISYDIVEDIMVQGDR 356 (623)
Q Consensus 280 ~~~~ia~~lalA~~l~q~~~~lqq-~~~q~~e~la-~lsHELRtPLtaI~~~a~lL~~~l~-~~~~~~~~~e~I~~e~~r 356 (623)
.++.++.+++.+..+++.....++ ...+++.+++ .+-|.+..+|+.|......+..... ..+...+.+..|....++
T Consensus 332 ll~~l~~~l~~~l~~~~~~~~~~~~~~~~er~~iarelhd~i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 411 (569)
T PRK10600 332 LVDTLVEQLTATLALERQQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNA 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 888888888766655443332222 1222233333 3333456667777666555533221 123334555555555555
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCc
Q 006963 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP 436 (623)
Q Consensus 357 L~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~pp 436 (623)
+...+.++...
T Consensus 412 ~~~~lr~ll~~--------------------------------------------------------------------- 422 (569)
T PRK10600 412 SWRQLRELLTT--------------------------------------------------------------------- 422 (569)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 54444444210
Q ss_pred cccccCCCCCceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEE-eCHHHHHHHHHHHHHHHHhhcCCCCeEEE
Q 006963 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA-VEEPALRQALSNLIEGALMRTQVGGKVEI 515 (623)
Q Consensus 437 L~La~~e~~~~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~-~D~~~L~qVL~NLL~NAlk~t~~gg~I~I 515 (623)
.+ ....++++.+.+..++..+.... +..+.+.....+..+. .+...+.+++.|+|.||+||++. +.|.|
T Consensus 423 ---~r---~~~~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a-~~i~V 492 (569)
T PRK10600 423 ---FR---LQLTEPGLRPALEASCEEFSARF---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQA-SEVVV 492 (569)
T ss_pred ---cC---cCcccCCHHHHHHHHHHHHHHHh---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Confidence 00 01345788899999998887654 3455555322222222 23456999999999999999975 68888
Q ss_pred EEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCc
Q 006963 516 VSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595 (623)
Q Consensus 516 ~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~ 595 (623)
.+. ..++.+.|.|.|+|+||+++. . .+.|+||+||++++++|||+|++.+.+
T Consensus 493 ~~~-~~~~~~~l~V~D~G~Gi~~~~--------~--------------~~~glGL~i~~~~~~~lgG~l~i~s~~----- 544 (569)
T PRK10600 493 TVA-QNQNQVKLSVQDNGCGVPENA--------E--------------RSNHYGLIIMRDRAQSLRGDCRVRRRE----- 544 (569)
T ss_pred EEE-EcCCEEEEEEEECCCCCCccc--------c--------------CCCCccHHHHHHHHHHcCCEEEEEECC-----
Confidence 887 556789999999999998752 0 167899999999999999999999986
Q ss_pred CCCCeEEEEEEecCCCCCCCCC
Q 006963 596 LGSGGTRVELWLPSPAPLSDLN 617 (623)
Q Consensus 596 ~g~~GT~f~I~LP~~~~~~~~~ 617 (623)
+. ||+|+|+||......+..
T Consensus 545 -~~-Gt~v~i~lp~~~~~~~~~ 564 (569)
T PRK10600 545 -SG-GTEVVVTFIPEKTFTDVQ 564 (569)
T ss_pred -CC-CEEEEEEEecCCCccccC
Confidence 54 999999999976554443
No 44
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.82 E-value=5.6e-18 Score=184.13 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhhcCCeEEEEecC--CceEEEeCHHHHHHHHHHHHHHHHhhcC---CCCeEEEEEEEecCCeEEEEEee
Q 006963 457 GDLFEAVRPLAHMQQRQVELSELS--QSLLVAVEEPALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDD 531 (623)
Q Consensus 457 ~~ll~~~~~~a~~~~~~i~l~~~~--~~~~V~~D~~~L~qVL~NLL~NAlk~t~---~gg~I~I~~~~~~~~~v~I~V~D 531 (623)
.-++-.-...+++.|+.+.++... ....-..+...+..++.|||+||+.+.- +++.|.+.+. ..++.+.|+|.|
T Consensus 391 Ag~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~-~~~~~lvieV~D 469 (537)
T COG3290 391 AGFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS-DRGDELVIEVAD 469 (537)
T ss_pred HHHHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEE-ecCCEEEEEEeC
Confidence 333333445566678888887322 2223566788999999999999999865 5578999998 777889999999
Q ss_pred CCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 532 DGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 532 ~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
+|||||++.++++|+..|+++. +.+.|+||++||++++++||.|+++|.. + .||+|.+++|-..
T Consensus 470 ~G~GI~~~~~~~iFe~G~Stk~---------~~~rGiGL~Lvkq~V~~~~G~I~~~s~~------~-~Gt~F~i~iP~~~ 533 (537)
T COG3290 470 TGPGIPPEVRDKIFEKGVSTKN---------TGGRGIGLYLVKQLVERLGGSIEVESEK------G-QGTRFSIYIPKVK 533 (537)
T ss_pred CCCCCChHHHHHHHhcCccccC---------CCCCchhHHHHHHHHHHcCceEEEeeCC------C-CceEEEEECCCCc
Confidence 9999999999999999998753 2389999999999999999999999974 4 5999999999875
No 45
>PRK13559 hypothetical protein; Provisional
Probab=99.82 E-value=1.4e-18 Score=185.78 Aligned_cols=185 Identities=11% Similarity=0.124 Sum_probs=134.6
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~ 387 (623)
+.+++..++|++||||++|.++..++.. .....++++.|.....+|..+++++.+
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~----~~~~~~~~~~i~~~~~~l~~~~~~ll~--------------------- 224 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGR----ADDPSLYAAAIQERVQALARAHETLLD--------------------- 224 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 4567888999999999999999988752 222344555555555555544443310
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHh
Q 006963 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (623)
Q Consensus 388 ~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a 467 (623)
. ...+++++.++++.++..+...
T Consensus 225 ---------------------------------------------------~-----~~~~~v~l~~~~~~~~~~~~~~- 247 (361)
T PRK13559 225 ---------------------------------------------------E-----RGWETVEVEELIRAQVAPYAPR- 247 (361)
T ss_pred ---------------------------------------------------c-----CCcCcccHHHHHHHHHHhhcCC-
Confidence 1 1246789999999998877532
Q ss_pred hhcCCeEEEEecCCceEEEeCH-HHHHHHHHHHHHHHHhh---cCCCCeEEEEEE-EecCCeEEEEEeeCCCCCChhhHh
Q 006963 468 HMQQRQVELSELSQSLLVAVEE-PALRQALSNLIEGALMR---TQVGGKVEIVSA-AAPAGDALVVIDDDGPDMHYMTQM 542 (623)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~-~~L~qVL~NLL~NAlk~---t~~gg~I~I~~~-~~~~~~v~I~V~D~G~GI~~e~~~ 542 (623)
+..+.+.. ....+..+. ..|.+||.||+.||+|| ++.+|.|.|.+. ...++.+.|.|.|+|.|++++
T Consensus 248 ---~~~i~~~~--~~~~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~--- 319 (361)
T PRK13559 248 ---ATRVAFEG--PGIRLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK--- 319 (361)
T ss_pred ---CceEEEEC--CCeeeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC---
Confidence 35555542 223333332 46999999999999999 566789999883 145677999999999987653
Q ss_pred hhcCCCcccccccccccCCCCCCcchhHHHHHHHHHH-cCCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 543 HSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLES-YGCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 543 ~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~-~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
. .|+|+||.||++++++ |||+|++.+. + .||+|+|+||..
T Consensus 320 ------~--------------~~~g~Gl~i~~~~v~~~~gG~i~~~~~-------~-~G~~~~l~~P~~ 360 (361)
T PRK13559 320 ------L--------------AKRGFGTVIIGAMVESQLNGQLEKTWS-------D-DGLLARIEIPSR 360 (361)
T ss_pred ------C--------------CCCCcHHHHHHHHHHHHcCCeEEEEEc-------C-CeEEEEEEEeCC
Confidence 1 1789999999999987 9999999985 3 499999999974
No 46
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.80 E-value=4.8e-19 Score=157.91 Aligned_cols=110 Identities=27% Similarity=0.354 Sum_probs=98.3
Q ss_pred eCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCc
Q 006963 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566 (623)
Q Consensus 487 ~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~Gt 566 (623)
+|+..|++++.||++||++|++.++.|.|.+. ..++.+.|.|+|+|.||+++.++++|++|++.+.... ...|+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~-~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~-----~~~g~ 74 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIE-EDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSET-----SISGH 74 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEE-EETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSG-----GSSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEE-EecCeEEEEEEeccccccccccccchhhccccccccc-----ccCCC
Confidence 68999999999999999999998899999998 5668899999999999999999999999998764111 12489
Q ss_pred chhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 567 GLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
|+||++|+.++++|+|+|++.+.. + +||+|+++||.
T Consensus 75 GlGL~~~~~~~~~~~g~l~~~~~~------~-~gt~v~~~~p~ 110 (111)
T PF02518_consen 75 GLGLYIVKQIAERHGGELTIESSE------G-GGTTVTFTLPL 110 (111)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEET------T-TEEEEEEEEEG
T ss_pred ChHHHHHHHHHHHCCCEEEEEEcC------C-CcEEEEEEEEC
Confidence 999999999999999999999975 4 59999999996
No 47
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.77 E-value=3.6e-16 Score=176.85 Aligned_cols=132 Identities=23% Similarity=0.341 Sum_probs=102.7
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEec-CCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeE
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v 525 (623)
..++++.+++..++..+.... +..+.+... +.......+...+.|++.|++.||++|++. +.|.|.+....++.+
T Consensus 429 ~~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~-~~i~i~~~~~~~~~~ 504 (565)
T PRK10935 429 IQEANLGSALEEMLDQLRNQT---DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANA-SEIAVSCVTNPDGEH 504 (565)
T ss_pred CCCCCHHHHHHHHHHHHHHhh---CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEEEEEcCCCEE
Confidence 356789999999999887543 344555422 222233344556999999999999999865 788888874436789
Q ss_pred EEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEE
Q 006963 526 LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 605 (623)
Q Consensus 526 ~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I 605 (623)
.|.|.|+|+||++.. ..|+|+||+||++++++|||+|++.|.+ +. ||+|++
T Consensus 505 ~i~V~D~G~Gi~~~~----------------------~~~~glGL~i~~~iv~~~~G~i~v~s~~------~~-Gt~~~i 555 (565)
T PRK10935 505 TVSIRDDGIGIGELK----------------------EPEGHYGLNIMQERAERLGGTLTISQPP------GG-GTTVSL 555 (565)
T ss_pred EEEEEECCcCcCCCC----------------------CCCCCcCHHHHHHHHHHcCCEEEEEECC------CC-cEEEEE
Confidence 999999999998631 0178999999999999999999999986 54 999999
Q ss_pred EecCCC
Q 006963 606 WLPSPA 611 (623)
Q Consensus 606 ~LP~~~ 611 (623)
.||...
T Consensus 556 ~lP~~~ 561 (565)
T PRK10935 556 TFPSQQ 561 (565)
T ss_pred EECCCC
Confidence 999864
No 48
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.68 E-value=2.1e-15 Score=172.56 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=115.8
Q ss_pred eeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHH---HHHHHHHHHhhc------------CCCCeEE
Q 006963 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA---LSNLIEGALMRT------------QVGGKVE 514 (623)
Q Consensus 450 v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qV---L~NLL~NAlk~t------------~~gg~I~ 514 (623)
+.+..++...-..++..+...++.+++..... .+..|+..+.++ |.|||.||++|+ +.+|.|.
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~--~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~ 420 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS--STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLI 420 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC--ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceE
Confidence 45666666666666666666677777764333 367899999888 679999999995 4568899
Q ss_pred EEEEEecCCeEEEEEeeCCCCCChhhH---------------------hhhcCCCcccccccccccCCCCCCcchhHHHH
Q 006963 515 IVSAAAPAGDALVVIDDDGPDMHYMTQ---------------------MHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 573 (623)
Q Consensus 515 I~~~~~~~~~v~I~V~D~G~GI~~e~~---------------------~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIv 573 (623)
|.+. ..++.+.|.|.|+|.||+++.. ..||+|||++..... ...|.|+||+||
T Consensus 421 l~a~-~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~~~-----~~sGrGvGL~iV 494 (670)
T PRK10547 421 LSAE-HQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQVT-----DVSGRGVGMDVV 494 (670)
T ss_pred EEEE-EcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccccc-----cCCCCchhHHHH
Confidence 9997 5678899999999999998643 369999887642111 124999999999
Q ss_pred HHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 574 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 574 r~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|++++.|||.|++.|.+ +. ||+|+|+||..-
T Consensus 495 k~~ve~lgG~I~v~S~~------g~-Gt~f~i~LPltl 525 (670)
T PRK10547 495 KRNIQEMGGHVEIQSKQ------GK-GTTIRILLPLTL 525 (670)
T ss_pred HHHHHHcCCEEEEEecC------CC-cEEEEEEEechh
Confidence 99999999999999986 65 999999999864
No 49
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.47 E-value=1.2e-12 Score=113.41 Aligned_cols=110 Identities=26% Similarity=0.359 Sum_probs=93.2
Q ss_pred eCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCc
Q 006963 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566 (623)
Q Consensus 487 ~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~Gt 566 (623)
+|...|.+++.|+++||++|...++.|.|.+. ..++.+.|.|.|+|.|++++....+|.+++.... .. ....+.
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~-~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~----~~~~~~ 74 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLE-RDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RS----RKIGGT 74 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE-EcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CC----CCCCcc
Confidence 46789999999999999999887788999987 5567799999999999999999999999886542 11 112378
Q ss_pred chhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 567 GLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
|+||++|+.+++.|+|.+.+.+.. + +|++|++.+|.
T Consensus 75 g~gl~~~~~~~~~~~g~~~~~~~~------~-~g~~~~~~~~~ 110 (111)
T smart00387 75 GLGLSIVKKLVELHGGEISVESEP------G-GGTTFTITLPL 110 (111)
T ss_pred cccHHHHHHHHHHcCCEEEEEecC------C-CcEEEEEEeeC
Confidence 999999999999999999998763 3 59999999986
No 50
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.44 E-value=1.1e-11 Score=142.81 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=114.5
Q ss_pred eeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHH---HHHHHHHHHhhc------------CCCCeE
Q 006963 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA---LSNLIEGALMRT------------QVGGKV 513 (623)
Q Consensus 449 ~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qV---L~NLL~NAlk~t------------~~gg~I 513 (623)
.+.+..++...=...+.++.+-++++++...... ...|+.-|.++ |.+||.||+.|. ++.|.|
T Consensus 389 MvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~--telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I 466 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARKLGKQVELVIEGED--TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTI 466 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHHhCCeeEEEEecCC--eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceE
Confidence 3556666666666666666666777777643332 55688777766 899999999983 345899
Q ss_pred EEEEEEecCCeEEEEEeeCCCCCChh------------------------hHhhhcCCCcccccccccccCCCCCCcchh
Q 006963 514 EIVSAAAPAGDALVVIDDDGPDMHYM------------------------TQMHSLTPFGSELFSENMVEDNMTWNFVAG 569 (623)
Q Consensus 514 ~I~~~~~~~~~v~I~V~D~G~GI~~e------------------------~~~~iFepF~~~~~s~~~~~~~~~~GtGLG 569 (623)
.+++. ..++.+.|.|.|+|.||+.+ ...-||.|.|++...-. .-.|-|.|
T Consensus 467 ~L~A~-~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~Vt-----dvSGRGVG 540 (716)
T COG0643 467 TLSAY-HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQVT-----DVSGRGVG 540 (716)
T ss_pred EEEEE-cCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhhh-----cccCCccC
Confidence 99998 78899999999999999432 33468999998743322 23599999
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 570 LaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
|-+||+-++++||.|.|.|.+ |+ ||+|+|.||+.
T Consensus 541 MDVVk~~I~~LgG~I~V~S~~------G~-GT~Fti~LPLT 574 (716)
T COG0643 541 MDVVKTNIEQLGGSISVSSEP------GK-GTTFTIRLPLT 574 (716)
T ss_pred HHHHHHHHHHcCCEEEEEecC------CC-CeEEEEecCcH
Confidence 999999999999999999998 86 99999999975
No 51
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.42 E-value=1.4e-10 Score=126.02 Aligned_cols=129 Identities=19% Similarity=0.318 Sum_probs=101.1
Q ss_pred eeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCH-HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEE
Q 006963 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE-PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (623)
Q Consensus 449 ~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~-~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I 527 (623)
.-++...++++++.|.... ++.+++++.-.+..+..+. -.+-||+..-+.||+||+.. .+|.|.+. ..++.+.+
T Consensus 441 e~~L~~AL~~~~~~f~~qt---g~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~A-s~i~V~~~-~~~g~~~~ 515 (574)
T COG3850 441 EAELPPALEQMLAEFSNQT---GITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQA-SEIKVTVS-QNDGQVTL 515 (574)
T ss_pred cCchHHHHHHHHHHHHhcc---CCeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHhccc-CeEEEEEE-ecCCeEEE
Confidence 3477888899999888554 6788777533333333332 36889999999999999986 88999998 45589999
Q ss_pred EEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 528 VIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 528 ~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
.|.|||+||+... +| + | -.||.|.++-++.+||.++|.+.+ + +||.+.++|
T Consensus 516 ~VeDnG~Gi~~~~-----e~------~----------g-HyGL~IM~ERA~~L~~~L~i~~~~------~-gGT~V~ltf 566 (574)
T COG3850 516 TVEDNGVGIDEAA-----EP------S----------G-HYGLNIMRERAQRLGGQLRIRRRE------G-GGTEVSLTF 566 (574)
T ss_pred EEeeCCcCCCCcc-----CC------C----------C-CcchHHHHHHHHHhcCeEEEeecC------C-CCeEEEEEe
Confidence 9999999999751 11 0 3 479999999999999999999986 5 599999999
Q ss_pred cCCC
Q 006963 608 PSPA 611 (623)
Q Consensus 608 P~~~ 611 (623)
|...
T Consensus 567 ~~~~ 570 (574)
T COG3850 567 PPEE 570 (574)
T ss_pred cccc
Confidence 8643
No 52
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.41 E-value=1.5e-12 Score=144.85 Aligned_cols=117 Identities=17% Similarity=0.124 Sum_probs=90.5
Q ss_pred EEeCHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEe--cCCeEEEEEeeCCCCCChhhHhhhcCCCccccccccccc
Q 006963 485 VAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAA--PAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE 559 (623)
Q Consensus 485 V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~--~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~ 559 (623)
+..+...|.+++.|||+||++|++.++ .|.|.+... +++.+.|.|.|||+||++++++++|++|+.+......
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~-- 107 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL-- 107 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc--
Confidence 445678999999999999999987655 677777632 3456899999999999999999999998665321110
Q ss_pred CCCCCCcchhHHHHHHHHHHcCCE-EEEEeCCCccCcCCCCeE-EEEEEecCC
Q 006963 560 DNMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGSGGT-RVELWLPSP 610 (623)
Q Consensus 560 ~~~~~GtGLGLaIvr~ive~~GG~-I~v~S~~~~~~~~g~~GT-~f~I~LP~~ 610 (623)
....+++||||++|+.+++.|+|. +++.|.+ +. |+ .|.++||..
T Consensus 108 ~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~------~~-g~~~~~~~l~id 153 (535)
T PRK04184 108 RQSRGQQGIGISAAVLYAQMTTGKPVRVISST------GG-SKKAYYFELKID 153 (535)
T ss_pred ccCCCCCCcchHHHHHHHHHhcCCcEEEEEec------CC-CceEEEEEEEec
Confidence 111247999999999999999986 9999875 44 65 778887643
No 53
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.38 E-value=3.9e-10 Score=113.52 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=100.2
Q ss_pred eeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCH-HHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCC
Q 006963 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE-PALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAG 523 (623)
Q Consensus 448 ~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~-~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~ 523 (623)
..++...+++.+...+.+.+....+.+... ..+.+.+..|. ..|.-|+..|+.||+||+-. +|+|.|.+....++
T Consensus 79 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~-~~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~ 157 (221)
T COG3920 79 DTWDFASYLELLASNLFPSYGGKDIRLILD-SGPNVFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDG 157 (221)
T ss_pred ceEcHHHHHHHHHHHHHHhcCCCCceEEEe-cCCceEECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCC
Confidence 457888888888888887652233444443 22224454443 47999999999999999643 68999999854444
Q ss_pred -eEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHH-HHcCCEEEEEeCCCccCcCCCCeE
Q 006963 524 -DALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL-ESYGCVVRVISPWKTDAALGSGGT 601 (623)
Q Consensus 524 -~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~iv-e~~GG~I~v~S~~~~~~~~g~~GT 601 (623)
...+.|||+|.|++.+. ++ . ..|+|+.+++.++ ++.||.+...++ +||
T Consensus 158 ~~~~l~v~deg~G~~~~~------~~-~--------------~~g~G~~Lv~~lv~~q~~g~~~~~~~---------~Gt 207 (221)
T COG3920 158 GRFLLTVWDEGGGPPVEA------PL-S--------------RGGFGLQLVERLVPEQLGGELEDERP---------DGT 207 (221)
T ss_pred CeEEEEEEECCCCCCCCC------CC-C--------------CCCcHHHHHHHHHHHHcCCeEEEEcC---------CCE
Confidence 48999999999998742 11 1 5679999999999 899999999874 399
Q ss_pred EEEEEecCCC
Q 006963 602 RVELWLPSPA 611 (623)
Q Consensus 602 ~f~I~LP~~~ 611 (623)
+|+|+||...
T Consensus 208 ~~~i~~~~~~ 217 (221)
T COG3920 208 EFRLRFPLSE 217 (221)
T ss_pred EEEEEEeccc
Confidence 9999999864
No 54
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.35 E-value=2.4e-10 Score=118.54 Aligned_cols=189 Identities=17% Similarity=0.191 Sum_probs=133.9
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhccc
Q 006963 310 ARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNS 389 (623)
Q Consensus 310 e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~~ 389 (623)
+....+-.||-.-+|+|++-+.++.+ ..+++..+..+..|..-+-++.+.+.++..
T Consensus 305 ~vARELHDeIGQnITAIr~Qa~ivkR-~~~~~q~kqaas~Ie~LslrI~~svrqLL~----------------------- 360 (497)
T COG3851 305 DVARELHDEIGQNITAIRTQAGIVKR-AADNAQVKQAASLIEQLSLRIYDSVRQLLG----------------------- 360 (497)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh-ccCCHhHHhHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 33344556889999999999988766 555555555555555555555555555421
Q ss_pred CCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHhhh
Q 006963 390 AYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469 (623)
Q Consensus 390 ~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a~~ 469 (623)
++.........+.+.+..++.++.- .+
T Consensus 361 ---------------------------------------------------rLRP~~LDdL~l~qai~~l~~Em~~--~e 387 (497)
T COG3851 361 ---------------------------------------------------RLRPRQLDDLTLEQAIRSLLREMEL--EE 387 (497)
T ss_pred ---------------------------------------------------hcCCcccccccHHHHHHHHHHHhhh--hh
Confidence 1111224567889999999998864 44
Q ss_pred cCCeEEEEec-CCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCC
Q 006963 470 QQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548 (623)
Q Consensus 470 ~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF 548 (623)
+|+...++.. .+...-..-+.-|.+++..++.|-+||+.+ ..|+|... .+++.+.++|+|||.|+|..
T Consensus 388 rgihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~A-S~V~i~l~-~~~e~l~Lei~DdG~Gl~~~--------- 456 (497)
T COG3851 388 RGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADA-SAVTIQLW-QQDERLMLEIEDDGSGLPPG--------- 456 (497)
T ss_pred cCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhcccc-ceEEEEEe-eCCcEEEEEEecCCcCCCCC---------
Confidence 6777666621 111111111235888999999999999987 88999987 55666999999999999862
Q ss_pred cccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 549 ~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
++ -.|.||.-.++-|...||++++.+. .||++.|.+|.
T Consensus 457 -~~-------------v~G~Gl~GmrERVsaLGG~ltlssq---------~GTrviVnLPq 494 (497)
T COG3851 457 -SG-------------VQGFGLTGMRERVSALGGTLTLSSQ---------HGTRVIVNLPQ 494 (497)
T ss_pred -CC-------------ccCcCcchHHHHHHHhCCceEEEec---------cCcEEEEecch
Confidence 11 4678899999999999999999883 39999999994
No 55
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.33 E-value=1.8e-11 Score=104.16 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhhcCC-CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhH
Q 006963 492 LRQALSNLIEGALMRTQV-GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGL 570 (623)
Q Consensus 492 L~qVL~NLL~NAlk~t~~-gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGL 570 (623)
|.+++.+|++||++|... ++.|.|.+. ..++.+.|.|.|+|.|+++..+...|.+|.... .. ....+.|+||
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~-~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~~--~~----~~~~~~g~gl 73 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVE-RDGDHLEIRVEDNGPGIPEEDLERIFERFSDGS--RS----RKGGGTGLGL 73 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEE-ecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcCC--CC----CCCCccccCH
Confidence 468999999999999875 578888887 556679999999999999999999998861110 00 1123899999
Q ss_pred HHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 571 aIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
+++++++..|||.+++.+.. + +|++|++.+
T Consensus 74 ~~~~~~~~~~~g~~~~~~~~------~-~g~~~~~~~ 103 (103)
T cd00075 74 SIVKKLVELHGGRIEVESEP------G-GGTTFTITL 103 (103)
T ss_pred HHHHHHHHHcCCEEEEEeCC------C-CcEEEEEEC
Confidence 99999999999999998763 3 599998864
No 56
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.31 E-value=2.2e-11 Score=138.25 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=78.8
Q ss_pred EeCHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCC
Q 006963 486 AVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNM 562 (623)
Q Consensus 486 ~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~ 562 (623)
..|...|.+++.|||+||++|+..++ .|.|.+. ..+..+.|.|.|||+||++++++++|++|+++..-.......+
T Consensus 41 D~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie-~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 41 DSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIE-EVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEE-ECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 34577899999999999999998765 6888886 4556789999999999999999999999875431111101112
Q ss_pred CCCcchhHHHHHHHHHHcCCEEEEEeCC
Q 006963 563 TWNFVAGLTVARELLESYGCVVRVISPW 590 (623)
Q Consensus 563 ~~GtGLGLaIvr~ive~~GG~I~v~S~~ 590 (623)
..|.||||+++...+. +||.+.+.|..
T Consensus 120 ~rG~GLglai~~sqlt-~GgpI~I~S~~ 146 (795)
T PRK14868 120 QQGIGISAAVLYSQLT-SGKPAKITSRT 146 (795)
T ss_pred CCceehHHHHHHHHHc-CCCcEEEEeCC
Confidence 3477777777777773 79999999975
No 57
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.28 E-value=1.6e-09 Score=116.93 Aligned_cols=125 Identities=22% Similarity=0.216 Sum_probs=94.6
Q ss_pred eeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCc-eEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEE
Q 006963 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528 (623)
Q Consensus 450 v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~-~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~ 528 (623)
..+.+-+...++.+... .+..+.+.....+ ..-..-...+.+++...|.||+||+.+ ..|.|.+. ..++.+.+.
T Consensus 240 ~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A-~~v~V~l~-~~~~~l~l~ 314 (365)
T COG4585 240 LGLVEALRALLADFEER---TGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQA-TEVRVTLE-RTDDELRLE 314 (365)
T ss_pred chHHHHHHHHHHHHHhh---cCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCC-ceEEEEEE-EcCCEEEEE
Confidence 34556666666665533 3445544432211 122344678999999999999999987 78999998 666779999
Q ss_pred EeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEec
Q 006963 529 IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608 (623)
Q Consensus 529 V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP 608 (623)
|.|||.|++.+.. +.|+||.-.|+-++..||++++.|.+ |. ||++++++|
T Consensus 315 V~DnG~Gf~~~~~-----------------------~~~~GL~~mreRv~~lgG~l~i~S~~------g~-Gt~i~i~lP 364 (365)
T COG4585 315 VIDNGVGFDPDKE-----------------------GGGFGLLGMRERVEALGGTLTIDSAP------GQ-GTTVTITLP 364 (365)
T ss_pred EEECCcCCCcccc-----------------------CCCcchhhHHHHHHHcCCEEEEEecC------CC-ceEEEEecC
Confidence 9999999987421 24689999999999999999999986 65 999999999
Q ss_pred C
Q 006963 609 S 609 (623)
Q Consensus 609 ~ 609 (623)
.
T Consensus 365 l 365 (365)
T COG4585 365 L 365 (365)
T ss_pred C
Confidence 5
No 58
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.26 E-value=5.4e-11 Score=110.19 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHHHhhcC---CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCC
Q 006963 488 EEPALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~---~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~ 564 (623)
+...+..++.|++.||++|+. .++.|.|.+. ..++.+.+.|.|+|+||+. ..++|+||++.... ..
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~-~~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~~--------~~ 104 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISAT-IEDHEVYITVRDEGIGIEN--LEEAREPLYTSKPE--------LE 104 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEE-EeCCEEEEEEEEcCCCcCc--hhHhhCCCcccCCC--------CC
Confidence 456799999999999999862 3578999887 5667899999999999983 67899999875421 13
Q ss_pred CcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 565 GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
+.|+||+++++ +.+.+++.+.+ + +||+|+++.
T Consensus 105 ~~GlGL~lv~~----~~~~l~~~~~~------~-~Gt~v~i~~ 136 (137)
T TIGR01925 105 RSGMGFTVMEN----FMDDVSVDSEK------E-KGTKIIMKK 136 (137)
T ss_pred CCcccHHHHHH----hCCcEEEEECC------C-CCeEEEEEe
Confidence 88999999876 45789998874 4 499998863
No 59
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.23 E-value=7.8e-11 Score=129.91 Aligned_cols=105 Identities=13% Similarity=0.062 Sum_probs=84.2
Q ss_pred EEEeCHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccC
Q 006963 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVED 560 (623)
Q Consensus 484 ~V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~ 560 (623)
-+.++...|.+++.||++||++|+..++ .|.|.+.....+.+.|.|.|||+||+++++.++|++|+++...... .
T Consensus 21 Gf~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~--~ 98 (488)
T TIGR01052 21 GYSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRI--I 98 (488)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccccc--c
Confidence 3566889999999999999999987655 7888876323346789999999999999999999998876432211 1
Q ss_pred CCCCCcchhHHHHHHHHHHcCCE-EEEEeCC
Q 006963 561 NMTWNFVAGLTVARELLESYGCV-VRVISPW 590 (623)
Q Consensus 561 ~~~~GtGLGLaIvr~ive~~GG~-I~v~S~~ 590 (623)
...++.|+||++++.+++.|+|. ++|.+..
T Consensus 99 ~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 99 QSRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred ccCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 12248999999999999999998 8998865
No 60
>PRK03660 anti-sigma F factor; Provisional
Probab=99.18 E-value=3.5e-10 Score=105.80 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCC
Q 006963 488 EEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~ 564 (623)
+...+.+++.|++.||++|+.. ++.|.|.+. ..++.+.+.|.|+|+||++ ..+.|++|++..... .
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~-~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~~--------~ 104 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVE-IEEEELEITVRDEGKGIED--IEEAMQPLYTTKPEL--------E 104 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEE-ECCCEEEEEEEEccCCCCh--HHHhhCCCcccCCCC--------C
Confidence 4577899999999999998632 367888887 5667899999999999986 567899998754221 2
Q ss_pred CcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 565 GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
+.|+||+|+++ +.+.+++.+.+ + +||+|+|+++....
T Consensus 105 ~~GlGL~i~~~----~~~~i~~~~~~------~-~Gt~~~i~~~~~~~ 141 (146)
T PRK03660 105 RSGMGFTVMES----FMDEVEVESEP------G-KGTTVRMKKYLKKS 141 (146)
T ss_pred CccccHHHHHH----hCCeEEEEecC------C-CcEEEEEEEEeccc
Confidence 78999999875 56689998764 4 49999999887653
No 61
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.14 E-value=2.6e-10 Score=129.29 Aligned_cols=113 Identities=10% Similarity=0.074 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCC
Q 006963 489 EPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~G 565 (623)
...|.+++.||++||++|...++ .|.|.+.....+.+.|.|.|||+||+++.+.++|++|+++..-... ....++
T Consensus 34 ~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~--~qS~G~ 111 (659)
T PRK14867 34 LRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL--IQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce--eccCCC
Confidence 34456999999999999987543 7888886333456899999999999999999999998875321110 011237
Q ss_pred cchhHHHHHHHHHHc-CCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 566 FVAGLTVARELLESY-GCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 566 tGLGLaIvr~ive~~-GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
.|+||+++..+.+.+ ||.+.+.|.. + +|++|++.||..
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~------g-~G~~f~i~L~i~ 150 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTST------G-DGKIHEMEIKMS 150 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEc------C-CCEEEEEEEEEE
Confidence 899999999999885 6668988875 4 489999998874
No 62
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.02 E-value=1.4e-07 Score=101.52 Aligned_cols=131 Identities=17% Similarity=0.103 Sum_probs=91.0
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhcCCeEEEE--ecCCceEEEeCHHHHHHHHHHHHHHHHhhcC----CCCeEEEEEEEe
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS--ELSQSLLVAVEEPALRQALSNLIEGALMRTQ----VGGKVEIVSAAA 520 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~--~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~----~gg~I~I~~~~~ 520 (623)
.+.|+|.+=++.+-+-+.-.-..-+-++++. .++....+...+ -++.-|++||+||.- ..|.|.|++. .
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~----filQPLVENAIKHG~~~~~~~g~V~I~V~-~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPS----FILQPLVENAIKHGISQLKDTGRVTISVE-K 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhccCch----hhhhHHHHHHHHhcccchhcCCceEEEEE-E
Confidence 4668999988888776643222222233332 222111222222 356678899999942 3589999998 5
Q ss_pred cCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCC---EEEEEeCCCccCcCC
Q 006963 521 PAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGC---VVRVISPWKTDAALG 597 (623)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG---~I~v~S~~~~~~~~g 597 (623)
.+..+.+.|+|||.||+++ . ..|+|+||+.+++-++.+=| -+.+.+.+ .
T Consensus 489 ~d~~l~i~VeDng~li~p~----------~------------~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~------q 540 (557)
T COG3275 489 EDADLRIEVEDNGGLIQPD----------E------------EDGTGIGLANVHKRLKLLYGDDEGLHIESLE------Q 540 (557)
T ss_pred eCCeEEEEEecCCCCcCCC----------C------------CCCCChHHHHHHHHHHHhcCccccceEEecc------C
Confidence 6677999999999999885 1 12899999999999988766 67777764 4
Q ss_pred CCeEEEEEEecCCC
Q 006963 598 SGGTRVELWLPSPA 611 (623)
Q Consensus 598 ~~GT~f~I~LP~~~ 611 (623)
.||++.+++|...
T Consensus 541 -~gTri~f~lp~~~ 553 (557)
T COG3275 541 -AGTRIIFRLPLQR 553 (557)
T ss_pred -CCcEEEEEecCcc
Confidence 3999999999865
No 63
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.90 E-value=2.2e-08 Score=95.94 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCC
Q 006963 488 EEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~ 564 (623)
+...+..++.+++.||++|+.. ++.|.|.+. ..++.+.|.|.|+|+||+++.....|.||+....... ..
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~-~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~------~~ 111 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFE-IYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPIED------LR 111 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEE-EECCEEEEEEEECCcCCChHHhccccCCCCCCCcccc------cC
Confidence 3466888999999999999754 368888887 5577899999999999998888888888876432211 12
Q ss_pred CcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 565 GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
+.|+||++++.++.. +++.+ . +|++|++.-..
T Consensus 112 ~~G~GL~li~~l~d~----v~~~~--------~-~G~~v~~~k~~ 143 (161)
T PRK04069 112 EGGLGLFLIETLMDD----VTVYK--------D-SGVTVSMTKYI 143 (161)
T ss_pred CCceeHHHHHHHHHh----EEEEc--------C-CCcEEEEEEEc
Confidence 679999999999986 56654 2 37788776544
No 64
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.90 E-value=3.4e-07 Score=94.45 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=101.2
Q ss_pred eeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCce-EEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEE
Q 006963 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (623)
Q Consensus 448 ~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~-~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~ 526 (623)
...-|...++.+++.+. ...|+.+.+.....+. ....-...|.+|...-+.|-=+|+.. .+|.|.+. ..++.+.
T Consensus 318 DDLGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~A-trv~ill~-~~~d~vq 392 (459)
T COG4564 318 DDLGLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGA-TRVTILLQ-QMGDMVQ 392 (459)
T ss_pred hhhhHHHHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCC-eEEEEEec-cCCcceE
Confidence 34567778888888887 3356777776433332 23334568999999999999999854 78999997 6778899
Q ss_pred EEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEE
Q 006963 527 VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 606 (623)
Q Consensus 527 I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~ 606 (623)
+.|.|||+|++.+.... .-.|+||.-.|+-+..+||++.++|.+ .||.+++.
T Consensus 393 l~vrDnG~GF~~~~~~~--------------------~~~GiGLRNMrERma~~GG~~~v~s~p--------~GTel~v~ 444 (459)
T COG4564 393 LMVRDNGVGFSVKEALQ--------------------KRHGIGLRNMRERMAHFGGELEVESSP--------QGTELTVL 444 (459)
T ss_pred EEEecCCCCccchhhcc--------------------CccccccccHHHHHHHhCceEEEEecC--------CCcEEEEE
Confidence 99999999998753210 136899999999999999999999974 49999999
Q ss_pred ecCCC
Q 006963 607 LPSPA 611 (623)
Q Consensus 607 LP~~~ 611 (623)
||...
T Consensus 445 Lp~~~ 449 (459)
T COG4564 445 LPLDA 449 (459)
T ss_pred ecchh
Confidence 99864
No 65
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.83 E-value=1.1e-06 Score=97.94 Aligned_cols=98 Identities=24% Similarity=0.266 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHhhc----CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCC-
Q 006963 491 ALRQALSNLIEGALMRT----QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN- 565 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t----~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~G- 565 (623)
.+..++..|++||++|+ .+||.|.|... ..++.+.+.|.|||+||++.....+.+.. .+
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~-~~~~~i~i~i~Dng~g~~~~~~~~~~~~~---------------~~r 413 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAK-KQDDVIQISISDNGPGIDEEKLEGLSTKG---------------ENR 413 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEE-EcCCEEEEEEeeCCCCCChhHHHHHHhhc---------------cCc
Confidence 45577889999999995 46689999998 55788999999999999998766553321 02
Q ss_pred cchhHHHHHHHHHHcCCE--EEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 566 FVAGLTVARELLESYGCV--VRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 566 tGLGLaIvr~ive~~GG~--I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
.|+||.-++++++.+-|. +.+.|.+ +. ||.+.+++|...
T Consensus 414 ~giGL~Nv~~rl~~~~g~~~~~i~s~~------~~-gt~v~~~~~~~~ 454 (456)
T COG2972 414 SGIGLSNVKERLKLYFGEPGLSIDSQP------GK-GTFVQIIIPKRE 454 (456)
T ss_pred ccccHHHHHHHHHHeeCCcceeEeecC------CC-cEEEEEEeehhh
Confidence 589999999999998887 5777875 54 999999999754
No 66
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.81 E-value=7.1e-08 Score=92.26 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCc
Q 006963 490 PALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNF 566 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~Gt 566 (623)
..+..++.+++.||++|+.. ++.|.|.+. ..++.+.|.|.|+|+|++++.....|.+++....... ..+.
T Consensus 41 ~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~-~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~~------~~~~ 113 (159)
T TIGR01924 41 EDLKIAVSEACTNAVKHAYKEGENGEIGISFH-IYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPIDD------LREG 113 (159)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEE-EeCCEEEEEEEEcccccCchhhccccCCCCCCCCccc------CCCC
Confidence 45888999999999999743 468999887 5667899999999999998888877877655432211 1267
Q ss_pred chhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCC
Q 006963 567 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 610 (623)
Q Consensus 567 GLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~ 610 (623)
|+||+|+++++. .+.+.+. +|+++++.....
T Consensus 114 G~GL~Li~~L~D----~v~~~~~---------~G~~l~l~k~~~ 144 (159)
T TIGR01924 114 GLGLFLIETLMD----EVEVYED---------SGVTVAMTKYLN 144 (159)
T ss_pred ccCHHHHHHhcc----EEEEEeC---------CCEEEEEEEEEc
Confidence 999999999998 5766653 367777665443
No 67
>PF14501 HATPase_c_5: GHKL domain
Probab=98.79 E-value=8.8e-08 Score=84.21 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCC
Q 006963 488 EEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTW 564 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~ 564 (623)
+...|..+|.|||+||+++... ...|.|.+. ..++.+.|.|.+.-.+ + .+.++ +.. . ...
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~-~~~~~~~i~i~N~~~~---~-~~~~~----~~~-~-------~~~ 64 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIR-EENGFLVIIIENSCEK---E-IEKLE----SSS-S-------KKK 64 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEE-ecCCEEEEEEEECCCC---c-ccccc----ccc-c-------CCC
Confidence 4567889999999999998543 568999988 5668899999998544 1 12222 111 1 123
Q ss_pred CcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEec
Q 006963 565 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608 (623)
Q Consensus 565 GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP 608 (623)
+.|+||..+++++++++|.+.+.... +-.+++|.||
T Consensus 65 ~~G~GL~~v~~i~~~y~g~~~~~~~~--------~~f~~~i~ip 100 (100)
T PF14501_consen 65 GHGIGLKNVKKILEKYNGSLSIESED--------GIFTVKIVIP 100 (100)
T ss_pred CCCcCHHHHHHHHHHCCCEEEEEEEC--------CEEEEEEEEC
Confidence 89999999999999999999998753 3677888887
No 68
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-07 Score=97.44 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=114.9
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhc---CCeEEEEecCCceEEE-eCHHHHHHHHHHHHHHHHhhcC----CCC----eEE
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQ---QRQVELSELSQSLLVA-VEEPALRQALSNLIEGALMRTQ----VGG----KVE 514 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~---~~~i~l~~~~~~~~V~-~D~~~L~qVL~NLL~NAlk~t~----~gg----~I~ 514 (623)
...|++.++|+++.+..+-++... --.+.+.. ....... .-+..|.-++..|+.||+++|- ..+ .|.
T Consensus 213 ~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~-~~a~~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~ 291 (414)
T KOG0787|consen 213 DPRCSVKKVIKDASENARFLCDQYYLNSPELIIEG-HNALSFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIK 291 (414)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecC-cccccCccccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeE
Confidence 356999999999999888766432 23334432 1111122 2467899999999999999741 112 488
Q ss_pred EEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccccccccccc--CCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCc
Q 006963 515 IVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVE--DNMTWNFVAGLTVARELLESYGCVVRVISPWKT 592 (623)
Q Consensus 515 I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~--~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~ 592 (623)
|.+. ..+..+.|.|+|.|-||+.++.+++|.--|++......-. ...-.|+|.||.|+|..++-.||.+.+.|-.
T Consensus 292 V~V~-~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~Sle-- 368 (414)
T KOG0787|consen 292 VTVA-KGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLE-- 368 (414)
T ss_pred EEEe-cCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeee--
Confidence 8886 5666789999999999999999999998777643322111 1123699999999999999999999999976
Q ss_pred cCcCCCCeEEEEEEecCCC
Q 006963 593 DAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 593 ~~~~g~~GT~f~I~LP~~~ 611 (623)
|- ||-+.|+|-..+
T Consensus 369 ----G~-GTD~yI~Lk~ls 382 (414)
T KOG0787|consen 369 ----GI-GTDVYIYLKALS 382 (414)
T ss_pred ----cc-ccceEEEeccCC
Confidence 65 999999986654
No 69
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.69 E-value=5.7e-09 Score=122.91 Aligned_cols=155 Identities=18% Similarity=0.151 Sum_probs=123.0
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCC-ceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecC---
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA--- 522 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~-~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~--- 522 (623)
-.++++..++..++..+.+.+..++..+.+..+.. +..+.+|+..++|++.|++.||+|++.. +.|.+++.....
T Consensus 289 ~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~-~~i~~~~~~~~~~~~ 367 (786)
T KOG0519|consen 289 AKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHA-GHLEESVIAREELSE 367 (786)
T ss_pred eeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceeccccc-ceEEEEEEeehhcch
Confidence 46799999999999999999988777777764433 5679999999999999999999999887 555555442100
Q ss_pred --------------------------------------------CeEEEEEeeCCCCCChhhHhh-hcCCCccccccccc
Q 006963 523 --------------------------------------------GDALVVIDDDGPDMHYMTQMH-SLTPFGSELFSENM 557 (623)
Q Consensus 523 --------------------------------------------~~v~I~V~D~G~GI~~e~~~~-iFepF~~~~~s~~~ 557 (623)
-.-.+.+.|+|.+|+...... +|..|-+...+..+
T Consensus 368 ~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~ 447 (786)
T KOG0519|consen 368 SNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITR 447 (786)
T ss_pred hhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhcccccccc
Confidence 012468999999999987766 89998887655554
Q ss_pred ccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCCC
Q 006963 558 VEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 613 (623)
Q Consensus 558 ~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~~ 613 (623)
.++ |+|+|+.+++.+++.++|.+.+.+.. .. |++|.+.++.....
T Consensus 448 ~~~----gt~~~~~i~~~l~~l~~~~~~~~~~~------~~-~~t~~~~~~~~~~~ 492 (786)
T KOG0519|consen 448 LYG----GTGLGESIVFSLVELMSGEISDISCI------SL-GKTFSFTLDLLTNL 492 (786)
T ss_pred ccC----CCcccchhhccHHHHHHHHhhhhhhh------cc-CceeeEEEEeccCC
Confidence 444 99999999999999999999999876 54 89999988876533
No 70
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=98.61 E-value=1.5e-07 Score=76.40 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcc-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEI-SYDIVEDIMVQGDRLRGTLQELQDA 367 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~-~~~~~e~I~~e~~rL~~ll~~L~~~ 367 (623)
++++++.++|||||||++|.+++++|......++. .+++++.|..+.+++.++++++.++
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 62 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDF 62 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999883333333 4899999999999999999999764
No 71
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.28 E-value=7.2e-06 Score=74.48 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCC
Q 006963 489 EPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~G 565 (623)
...+.-++..++.||++|+..+ +.|.|.+. ...+.+.|.|.|+|+|+++.....-...-. .....
T Consensus 29 ~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~-~~~~~l~i~v~D~G~~~d~~~~~~~~~~~~-----------~~~~~ 96 (125)
T PF13581_consen 29 RDDLELAVSEALTNAVEHGYPGDPDGPVDVRLE-VDPDRLRISVRDNGPGFDPEQLPQPDPWEP-----------DSLRE 96 (125)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEE-EcCCEEEEEEEECCCCCChhhccCcccccC-----------CCCCC
Confidence 4578999999999999998764 57888877 566789999999999998865433211100 01227
Q ss_pred cchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEE
Q 006963 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 606 (623)
Q Consensus 566 tGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~ 606 (623)
.|+||.|++.++..+ .+ +. + +|+++++.
T Consensus 97 ~G~Gl~li~~l~D~~----~~-~~-------~-~gn~v~l~ 124 (125)
T PF13581_consen 97 GGRGLFLIRSLMDEV----DY-RE-------D-GGNTVTLR 124 (125)
T ss_pred CCcCHHHHHHHHcEE----EE-EC-------C-CeEEEEEE
Confidence 889999999999876 33 32 3 49999875
No 72
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.08 E-value=1.4e-05 Score=86.10 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccc-cccccCCCCC
Q 006963 489 EPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFS-ENMVEDNMTW 564 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s-~~~~~~~~~~ 564 (623)
...|.+++..|++|+++++...| .|.|.+...+.+.+.+.|.|||||||.+...++|-.+.-+..- .... ..+
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Q---sRG 110 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQ---SRG 110 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhh---ccc
Confidence 57899999999999999987655 6788887566788999999999999999999999875443211 1111 123
Q ss_pred CcchhHHHHHHHHHHcCCE-EEEEeCC
Q 006963 565 NFVAGLTVARELLESYGCV-VRVISPW 590 (623)
Q Consensus 565 GtGLGLaIvr~ive~~GG~-I~v~S~~ 590 (623)
-.|||.+-|=-..+..-|+ +.|.|..
T Consensus 111 qqGiGis~avLysQmTtGkPv~V~s~T 137 (538)
T COG1389 111 QQGIGISAAVLYSQMTTGKPVRVISST 137 (538)
T ss_pred cccccHHHHHHHHHhcCCCceEEEecC
Confidence 5788988888888877665 6776654
No 73
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=3.6e-05 Score=81.64 Aligned_cols=91 Identities=11% Similarity=0.095 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccccccccc-ccCCCC-CCcc
Q 006963 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM-VEDNMT-WNFV 567 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~-~~~~~~-~GtG 567 (623)
..+.+++.|||+||+++.. ..|.|.+. .++...|.|.|||.||++++++++|++|++++..... .....+ +..|
T Consensus 21 ~~~~~~l~eLi~Na~dA~a--~~I~i~~~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG 96 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA--TRIDVEIE--EGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRG 96 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC--CEEEEEEE--eCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccc
Confidence 4688999999999999854 57888775 2445569999999999999999999999987643210 000011 2347
Q ss_pred hhHHHHHHHHHHcCCEEEEEeC
Q 006963 568 AGLTVARELLESYGCVVRVISP 589 (623)
Q Consensus 568 LGLaIvr~ive~~GG~I~v~S~ 589 (623)
.||+-...+. .+++.+.
T Consensus 97 ~al~si~~~s-----~~~i~S~ 113 (312)
T TIGR00585 97 EALASISSVS-----RLTITTK 113 (312)
T ss_pred hHHHHHHhhC-----cEEEEEe
Confidence 7776655542 4555553
No 74
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.99 E-value=8.4e-05 Score=70.16 Aligned_cols=87 Identities=21% Similarity=0.176 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCC
Q 006963 488 EEPALRQALSNLIEGALMRTQV----GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~----gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~ 563 (623)
+-..++-++..++.||++|+.. .|.|.|.+. ..++.+.+.|+|.|+||.+ .+..+.+.+...+..
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~-~~~~~~~i~i~D~G~~~~~--~~~~~~~~~~~~~~~-------- 105 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVS-LDDGKLEIRIWDQGPGIED--LEESLGPGDTTAEGL-------- 105 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEE-EcCCeEEEEEEeCCCCCCC--HHHhcCCCCCCCccc--------
Confidence 4568899999999999999654 478999988 6667899999999988865 444556654432111
Q ss_pred CCcchhHHHHHHHHHHcCCEEEEEeC
Q 006963 564 WNFVAGLTVARELLESYGCVVRVISP 589 (623)
Q Consensus 564 ~GtGLGLaIvr~ive~~GG~I~v~S~ 589 (623)
..-|+||.++++++ .++.+.+.
T Consensus 106 ~~~G~Gl~l~~~~~----D~~~~~~~ 127 (146)
T COG2172 106 QEGGLGLFLAKRLM----DEFSYERS 127 (146)
T ss_pred ccccccHHHHhhhh----eeEEEEec
Confidence 14489999999977 45677644
No 75
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=97.80 E-value=7.9e-05 Score=58.19 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=47.2
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDA 367 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~ 367 (623)
.++++.++||+||||++|.++++++... ..++...++++.+..+.+++..+++++.++
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 60 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDT-ELSEEQREYLETILRSAERLLRLINDLLDL 60 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999998762 223333678888999999999999998664
No 76
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.76 E-value=0.00014 Score=56.19 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=49.5
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~ 366 (623)
..++++.++||+||||++|.++++.+.+.....+...+.++.+...++++..+++++..
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 62 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLD 62 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999998876655566677788888889999999988854
No 77
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.33 E-value=0.0012 Score=76.45 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccc
Q 006963 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSEL 552 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~ 552 (623)
.+..|+.+||+||+++. ...|.|.+. .++...|.|.|||.||+.+++..+|.++++++
T Consensus 22 ~~~svvkElveNsiDAg--at~I~v~i~--~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 22 RPASVVKELVENALDAG--ATRIDIEIE--EGGLKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CHHHHHHHHHHHHHhCC--CCEEEEEEE--eCCeEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 56789999999999975 368888884 45668899999999999999999999987764
No 78
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.20 E-value=0.0002 Score=66.71 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchh--H
Q 006963 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAG--L 570 (623)
Q Consensus 493 ~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLG--L 570 (623)
..+|..||+||+.+.. ..|.|.+.....+...|.|.|||.||+.+++...|..+++.+..... ....+..|+| +
T Consensus 4 ~~al~ElI~Ns~DA~a--~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~--~~~~G~~G~G~k~ 79 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA--TNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKD--RQSIGRFGIGLKL 79 (137)
T ss_dssp THHHHHHHHHHHHHHH--HHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHH--GGGGGGGTSGCGG
T ss_pred HHHHHHHHHHHHHccC--CEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhh--hhcCCCcceEHHH
Confidence 4688899999999754 35777776443456789999999999999999977655443321000 0112256677 4
Q ss_pred HHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEec
Q 006963 571 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608 (623)
Q Consensus 571 aIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP 608 (623)
++. .++..+.|.|.. .....++++.+.
T Consensus 80 A~~-----~~~~~~~v~S~~------~~~~~~~~~~~~ 106 (137)
T PF13589_consen 80 AIF-----SLGDRVEVISKT------NGESFTYTIDYD 106 (137)
T ss_dssp GGG-----GTEEEEEEEEES------TTSSSEEEEEEE
T ss_pred HHH-----HhcCEEEEEEEE------CCCCcEEEEEEe
Confidence 433 367889998875 222345555554
No 79
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=96.91 E-value=0.017 Score=51.34 Aligned_cols=115 Identities=22% Similarity=0.311 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC--cCeee---eccccc-------cCcchh
Q 006963 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV---LVGNFN-------MPAGLR 183 (623)
Q Consensus 116 df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~---l~g~~~-------~~~~~~ 183 (623)
|..++++..++.+.+.++.+ ++++|+... +...+.++..|..... ..+.. +++.+. .+....
T Consensus 1 dl~~l~~~i~~~l~~~~~~~-~~~l~~~d~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13492_consen 1 DLDELLERILELLRELLGAD-RAALFLLDE-----DGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDE 74 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-S-EEEEEEEET-----TCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC
T ss_pred CHHHHHHHHHHHHHHHhCCC-EEEEEEEEC-----CCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEeccccc
Confidence 57889999999999999666 666999872 2347888888843322 11110 111000 111000
Q ss_pred hhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccc
Q 006963 184 AAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESF 263 (623)
Q Consensus 184 ~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~ 263 (623)
....+....+++||..+++++|+|++.. ... +
T Consensus 75 ----------~~~~~~~s~~~vPl~~~~~~~Gvl~~~~-----------~~~---------~------------------ 106 (129)
T PF13492_consen 75 ----------RDFLGIRSLLVVPLRSRDRVIGVLCLDS-----------REP---------E------------------ 106 (129)
T ss_dssp -----------TTTTTCEEEEEEEEETTEEEEEEEEEE-----------CTT---------C------------------
T ss_pred ----------ccCCCCCEEEEEEEeECCEEEEEEEEEE-----------CCC---------C------------------
Confidence 0114456789999999999999999983 100 1
Q ss_pred hhhhhhhcccCHHHHHHHHHHHHHHHHHH
Q 006963 264 DHERMRVYKFSADQRLNAINICRSLAMAY 292 (623)
Q Consensus 264 ~~e~~~~~~f~~e~r~~~~~ia~~lalA~ 292 (623)
.|+.++...++.++.++++|.
T Consensus 107 --------~~~~~d~~~l~~~a~~~a~al 127 (129)
T PF13492_consen 107 --------EFSDEDLQLLESLANQLAIAL 127 (129)
T ss_dssp --------G-SHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHh
Confidence 156688888889999998865
No 80
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.62 E-value=0.039 Score=62.93 Aligned_cols=148 Identities=7% Similarity=-0.005 Sum_probs=87.1
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC--cCeee-----eccccc-----
Q 006963 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-----LVGNFN----- 177 (623)
Q Consensus 110 ~~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-----l~g~~~----- 177 (623)
.+..+.|+.++-+..++.+.+.++.+ ++++|+.... . .+..++.|..... ..... ++|.+.
T Consensus 13 ~l~~~~dl~~lL~~il~~l~~~l~a~-~~~I~L~d~~---~---~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~~~p 85 (534)
T TIGR01817 13 ILSAPTRLEKTLANVLNVLSNDLGMR-HGLITLSDSE---G---EPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVATGNS 85 (534)
T ss_pred HHhccCCHHHHHHHHHHHHHHhcCCC-EEEEEEECCC---C---CEEEEEEeCCChhhcccccccCCccHHHHHHhcCCe
Confidence 45667899999999999999999555 5558887521 1 1233444443221 00000 223221
Q ss_pred --cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 006963 178 --MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (623)
Q Consensus 178 --~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 255 (623)
+.....++. ......+........+++||..++.++|+|++.. . ....
T Consensus 86 vii~Dv~~d~~-~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s-----------~-----------~~~~------- 135 (534)
T TIGR01817 86 LVVPDVAAEPL-FLDRLSLYDPGPVPFIGVPIKADSETIGVLAADR-----------D-----------FRSR------- 135 (534)
T ss_pred EEecccccCch-hhhccccccCCcceEEEEEEcCCCEEEEEEEEEe-----------c-----------cccc-------
Confidence 222111111 1111122333456889999999999999999982 1 1111
Q ss_pred ccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310 (623)
Q Consensus 256 e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q~~~~lqq~~~q~~e 310 (623)
.|++++...+..+|..++++..+.+....+++...++++
T Consensus 136 ----------------~ft~~d~~lL~~lA~~ia~aI~~~~~~~~~~~~l~~~~~ 174 (534)
T TIGR01817 136 ----------------ERLEEEVRFLEMVANLIGQTVRLHRLVAQRRERLIAEAV 174 (534)
T ss_pred ----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 167788889999999999987655554444444443433
No 81
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=96.26 E-value=0.0065 Score=70.46 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCC--CeEEEEEEEecCCeEEEEEeeCCCCCChhhHhh--------hcCCCccccccccc
Q 006963 488 EEPALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH--------SLTPFGSELFSENM 557 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~--------iFepF~~~~~s~~~ 557 (623)
+...|..++..||+||++....| ..|.|.+. . ++ .|+|+|||.|||.+.... +|...+.+..-...
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~-~-dg--~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~ 109 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH-A-DG--SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNK 109 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe-C-CC--cEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCc
Confidence 35688999999999999874443 58888886 2 23 699999999999988777 77764443211111
Q ss_pred ccCCCCCC-cchhHHHHHHHHH
Q 006963 558 VEDNMTWN-FVAGLTVARELLE 578 (623)
Q Consensus 558 ~~~~~~~G-tGLGLaIvr~ive 578 (623)
.+. .+.| .|.|++.+.-+-+
T Consensus 110 ~yk-~SgGl~GvGls~vNalS~ 130 (631)
T PRK05559 110 AYK-FSGGLHGVGVSVVNALSS 130 (631)
T ss_pred ccc-ccCcccccchhhhhhhee
Confidence 111 1223 7899999988854
No 82
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.0081 Score=69.68 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccc
Q 006963 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSEL 552 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~ 552 (623)
+-.-|+..|++||+++.. .+|.|.+. .+|.-.|.|.|||.||++++++-.+.++.+.+
T Consensus 23 rPaSVVKELVENSlDAGA--t~I~I~ve--~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 23 RPASVVKELVENSLDAGA--TRIDIEVE--GGGLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred cHHHHHHHHHhcccccCC--CEEEEEEc--cCCccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 345688999999999854 57888774 44555699999999999999999999988754
No 83
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=95.65 E-value=0.13 Score=47.01 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC--cCeee-e----cccc-----c--cCcc
Q 006963 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-L----VGNF-----N--MPAG 181 (623)
Q Consensus 116 df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-l----~g~~-----~--~~~~ 181 (623)
|+.++.+..++.+++.++.+ ++++|+-..+ ...+..+..++.... ..... . .++. . +...
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~-~~~i~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 74 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGAD-RASIFLLDPD-----GNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDV 74 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTES-EEEEEEEETT-----TTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSS
T ss_pred CHHHHHHHHHHHHHHHHCCC-EEEEEEEecC-----CCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccc
Confidence 57788999999999999666 5557766511 235666666665432 01111 0 0111 0 1111
Q ss_pred hhhhhh---hhhccc-----------ccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 006963 182 LRAAEA---ALSSQQ-----------VQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 182 ~~~~~~---~l~~~~-----------~~~~~~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
...+.. ...... +........+++||..+|+++|+|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~g~~~G~l~l~ 127 (154)
T PF01590_consen 75 AADPRFAPQIAAQSALRALSSAERPFLAEYGVRSYLCVPIISGGRLIGVLSLY 127 (154)
T ss_dssp GGSTTSSCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEETTEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccCceeeEeeeecccCcEEEEEEE
Confidence 111110 000000 013345579999999999999999999
No 84
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=95.61 E-value=0.022 Score=66.50 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHh--------hhcCCCccc-ccccc
Q 006963 488 EEPALRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM--------HSLTPFGSE-LFSEN 556 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~--------~iFepF~~~-~~s~~ 556 (623)
+...|.+++..||+||++-... ...|.|.+. .++ .|+|+|||.|||.+... .+|.-...+ +....
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~--~~g--~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~ 102 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN--DDG--SVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKD 102 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe--CCC--cEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCC
Confidence 4467999999999999984323 368888886 233 39999999999986322 133322221 10000
Q ss_pred cccCCCCCCcchhHHHHHHHHH
Q 006963 557 MVEDNMTWNFVAGLTVARELLE 578 (623)
Q Consensus 557 ~~~~~~~~GtGLGLaIvr~ive 578 (623)
.+....+-.|.||+.+..+-+
T Consensus 103 -~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 103 -SYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred -cceecCCccchhHHHHHHhcC
Confidence 000001237899999988876
No 85
>PRK05218 heat shock protein 90; Provisional
Probab=95.56 E-value=0.035 Score=64.28 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhc----------------CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCC
Q 006963 495 ALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF 548 (623)
Q Consensus 495 VL~NLL~NAlk~t----------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF 548 (623)
.|..||.||.++. .....|.|.+. .++ -.|.|.|||.||+.+++...|...
T Consensus 30 ~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~-~~i~I~DnG~GMt~eel~~~l~~i 96 (613)
T PRK05218 30 FLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFD--KEA-RTLTISDNGIGMTREEVIENLGTI 96 (613)
T ss_pred HHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEc--CCC-CeEEEEECCCCCCHHHHHHHHHhh
Confidence 4677888887762 12245666553 333 359999999999999888766443
No 86
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=95.09 E-value=0.37 Score=43.67 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=68.4
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceEEEEeecCCCC--CcCe-ee------------------
Q 006963 114 SPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVN--ATDI-VV------------------ 171 (623)
Q Consensus 114 s~df~~l~~~ql~~~~~~~~~~a~~~-vYl~~~~~~~~~~~~l~~v~~yp~~~--~~~~-~~------------------ 171 (623)
+.++.++.+..++.+.+.. ++..+ +|+.+.. + .+..++...... .... ..
T Consensus 1 ~~~~~ell~~~~~~~~~~~--~~~~~~i~l~d~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (148)
T PF13185_consen 1 AEDLEELLQQILDALLELT--GADAGAIYLYDPD----G--QLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEG 72 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHH--S-SEEEEEEEETT----S--EEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSH
T ss_pred CcCHHHHHHHHHHHHHHHh--CCCEEEEEEEECC----C--cEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHH
Confidence 3578888999899999888 55666 8887611 1 445554433221 1000 00
Q ss_pred --eccccccCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCC
Q 006963 172 --LVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAF 249 (623)
Q Consensus 172 --l~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 249 (623)
.-|+..+.. .+.... ..............+++||+.+++++|+|.+.. . +. .
T Consensus 73 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~-----------~-----------~~-~- 126 (148)
T PF13185_consen 73 VLRTGEPIIIN-DDDSSF-PPWELARHPGIRSILCVPLRSGGEVIGVLSLYS-----------K-----------EP-N- 126 (148)
T ss_dssp HHHHTS-EEES-CCCGGG-STTHHHCCTT-SEEEEEEEEETTEEEEEEEEEE-----------S-----------ST-T-
T ss_pred HHhcCceEEEe-Cccccc-cchhhhccccCCEEEEEEEeECCEEEEEEEEee-----------C-----------CC-C-
Confidence 011111111 000000 001122344556799999999999999999882 1 11 0
Q ss_pred CCCCccccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHH
Q 006963 250 PPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAY 292 (623)
Q Consensus 250 ~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~ 292 (623)
.|+++++..++.++.++++|.
T Consensus 127 ----------------------~f~~~~~~~l~~la~~~a~ai 147 (148)
T PF13185_consen 127 ----------------------AFSEEDLELLEALADQIAIAI 147 (148)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CcCHHHHHHHHHHHHHHHHHh
Confidence 277888999999999998864
No 87
>PRK14083 HSP90 family protein; Provisional
Probab=94.77 E-value=0.034 Score=64.03 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhcCC--------CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcc-cccccc--cccCCC
Q 006963 494 QALSNLIEGALMRTQV--------GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS-ELFSEN--MVEDNM 562 (623)
Q Consensus 494 qVL~NLL~NAlk~t~~--------gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~-~~~s~~--~~~~~~ 562 (623)
..+.+||.||.++... .+.|.|.+. +.+...|.|.|||+||+.++..+.|-.... +..... ......
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~--d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~ 103 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT--DAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDF 103 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc--cCCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhccccccc
Confidence 4678888898887432 247777763 234567999999999999988876533322 111100 001112
Q ss_pred CCCcchhHHHHHHH
Q 006963 563 TWNFVAGLTVAREL 576 (623)
Q Consensus 563 ~~GtGLGLaIvr~i 576 (623)
.+..|+|.+-|-.+
T Consensus 104 IG~FGIGf~S~F~v 117 (601)
T PRK14083 104 LGQFGIGLLSCFLV 117 (601)
T ss_pred ccccccceEEEEEe
Confidence 34688887655443
No 88
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=94.60 E-value=0.041 Score=64.00 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhh--------hcCCCccccccccc
Q 006963 488 EEPALRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH--------SLTPFGSELFSENM 557 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~--------iFepF~~~~~s~~~ 557 (623)
+...|..++..||+||++-... ...|.|.+. . ++ .|+|+|||.|||.+.... +|.-...+..-+..
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~-~-~g--~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~ 109 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN-E-DG--SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGG 109 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe-C-CC--cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCC
Confidence 4568899999999999984333 358999886 2 33 799999999999863332 33332221100000
Q ss_pred ccCCCCCCcchhHHHHHHHHH
Q 006963 558 VEDNMTWNFVAGLTVARELLE 578 (623)
Q Consensus 558 ~~~~~~~GtGLGLaIvr~ive 578 (623)
.+.-..+-.|.||+.+..+-+
T Consensus 110 ~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 110 GYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred cccccCCccccchhhhhheec
Confidence 000001237899999988776
No 89
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=94.35 E-value=1.2 Score=38.57 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCc-Ceee-----ec------cccc-cCcch
Q 006963 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNAT-DIVV-----LV------GNFN-MPAGL 182 (623)
Q Consensus 116 df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~-~~~~-----l~------g~~~-~~~~~ 182 (623)
|+.++++..+..+...++.+ ++.+|+.... +...+...+.++..... .... +. +... +....
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (149)
T smart00065 1 DLEELLQTILEELRQLLGAD-RVLIYLVDED----DRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVE 75 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCc-eEEEEEEecC----CCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechh
Confidence 46788899999999999666 6668887621 12345555555443210 0000 00 0000 11000
Q ss_pred hhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 006963 183 RAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
..+ ................+++||..+++++|++++.
T Consensus 76 ~~~-~~~~~~~~~~~~~~s~~~~Pl~~~~~~~G~l~~~ 112 (149)
T smart00065 76 ADP-VFALDLLGRYQGVRSFLAVPLVADGELVGVLALH 112 (149)
T ss_pred hCC-ccccccccceeceeeEEEeeeeecCEEEEEEEEE
Confidence 000 0000000001114568999999999999999998
No 90
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=93.84 E-value=0.058 Score=62.60 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhc--CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhh--------Hhhhc-CCCcccccccccccCC
Q 006963 493 RQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT--------QMHSL-TPFGSELFSENMVEDN 561 (623)
Q Consensus 493 ~qVL~NLL~NAlk~t--~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~--------~~~iF-epF~~~~~s~~~~~~~ 561 (623)
..++..||+||++-. .....|.|.+. .+ -.|+|+|||.|||.+. .+-+| ....+++.... .+.
T Consensus 32 ~~lv~ElvdNsiDE~~ag~a~~I~V~i~--~d--~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~-~~~- 105 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALAGFASIIMVILH--QD--QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNK-NYH- 105 (625)
T ss_pred ceeehhhhhcccchhhcCCCCEEEEEEe--CC--CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCC-cce-
Confidence 556667777777621 12368888885 22 3699999999999887 66677 33322222211 111
Q ss_pred CCCC-cchhHHHHHHHHHHc
Q 006963 562 MTWN-FVAGLTVARELLESY 580 (623)
Q Consensus 562 ~~~G-tGLGLaIvr~ive~~ 580 (623)
.+.| .|.||+.+..+-+.+
T Consensus 106 ~SgG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 106 FSGGLHGVGISVVNALSKRV 125 (625)
T ss_pred ecCCCcchhHHHHHHhcCeE
Confidence 1223 799999999888743
No 91
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=93.36 E-value=0.73 Score=54.81 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=81.5
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC--cCeee-----eccccc-----
Q 006963 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-----LVGNFN----- 177 (623)
Q Consensus 110 ~~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-----l~g~~~----- 177 (623)
.+..+.|+.++.+..++.+.+.++.+ .+++||.... ...|...+.+..... ..+.. ++|.+.
T Consensus 11 ~L~s~~dL~e~L~~Iv~~~~~~l~~d-~~sI~L~D~~-----~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~tg~p 84 (748)
T PRK11061 11 KVASAPRLNEALDILVTETCLAMDTE-VCSVYLADHD-----RRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEP 84 (748)
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCCC-EEEEEEEECC-----CCEEEEEEeeCCChHhccceeccCCcchHHHHhccCce
Confidence 45567789999999999999999555 5559998621 234666666553211 11111 233322
Q ss_pred --cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 006963 178 --MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (623)
Q Consensus 178 --~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 255 (623)
++.....|. .........-.-...+.+||.+++.++|+|.+.. + ++.
T Consensus 85 V~V~Dv~~dpr-f~~~~~~~~~~~~S~L~VPL~~~geVIGVL~v~~-----------~-----------~~~-------- 133 (748)
T PRK11061 85 INLADAQKHPS-FKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQ-----------R-----------ELR-------- 133 (748)
T ss_pred EEECCcccCcc-cccCccccCccceEEEEEEEeeCCEEEEEEEEee-----------C-----------CCC--------
Confidence 222222221 1111111122234689999999999999999882 1 111
Q ss_pred ccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKS 298 (623)
Q Consensus 256 e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q~~ 298 (623)
.|++++...+..++.++++|....+..
T Consensus 134 ----------------~Fs~~d~~lL~~LA~~aAiAL~na~l~ 160 (748)
T PRK11061 134 ----------------QFDESEESFLVTLATQLAAILSQSQLT 160 (748)
T ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 167778888889999988877554443
No 92
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=93.10 E-value=0.1 Score=60.41 Aligned_cols=82 Identities=10% Similarity=0.075 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHh--------hhcCCCcccccccccccCC
Q 006963 492 LRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM--------HSLTPFGSELFSENMVEDN 561 (623)
Q Consensus 492 L~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~--------~iFepF~~~~~s~~~~~~~ 561 (623)
|.+++..||+||++..-. ...|.|.+. . ++ .|+|+|||.|||.+..+ .+|....++..-....+..
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~-~-~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~ 77 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTID-K-DN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKV 77 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEe-C-CC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccc
Confidence 345677888999987533 358888886 2 33 79999999999975433 2233332221000000000
Q ss_pred CCCCcchhHHHHHHHH
Q 006963 562 MTWNFVAGLTVARELL 577 (623)
Q Consensus 562 ~~~GtGLGLaIvr~iv 577 (623)
..+-.|.||+.+..+-
T Consensus 78 s~G~~G~Gls~vnalS 93 (594)
T smart00433 78 SGGLHGVGASVVNALS 93 (594)
T ss_pred cCCcccchHHHHHHhc
Confidence 1123789999998874
No 93
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=91.91 E-value=5.3 Score=47.16 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=73.0
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC-----cCee----eecccc-----
Q 006963 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA-----TDIV----VLVGNF----- 176 (623)
Q Consensus 111 ~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~-----~~~~----~l~g~~----- 176 (623)
+..+.|..++....++.+.+.++.+ .+++++..++ .+ +|..++.|..... .... .++|.+
T Consensus 194 l~s~~dl~ell~~I~~~i~~~~~a~-~~~I~L~d~~---~~--~L~~~aa~g~~~~~~~~~~~~~~~~~~l~g~V~~~~~ 267 (686)
T PRK15429 194 VLSRLDMDELVSEVAKEIHYYFDID-AISIVLRSHR---KN--KLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKE 267 (686)
T ss_pred HccCCCHHHHHHHHHHHHHHHhCCC-EEEEEEEECC---CC--cEEEEEecccChhhcccccccCCcccchHHHHHhcCc
Confidence 4456788899999999999999555 5558887622 22 4554444332110 0000 011211
Q ss_pred -ccCcc-hhhhhhhhhcccccC---CCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCC
Q 006963 177 -NMPAG-LRAAEAALSSQQVQV---VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPP 251 (623)
Q Consensus 177 -~~~~~-~~~~~~~l~~~~~~~---~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 251 (623)
.+... ..++- ......... -.-..++++||+.++.++|+|.+.. . . ..
T Consensus 268 p~lv~~~~~d~~-~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~-----------~-----------~-~~--- 320 (686)
T PRK15429 268 MLLINLHERDDL-APYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQ-----------C-----------E-EK--- 320 (686)
T ss_pred eEEEECccCccc-chhhhhhhhcccccceEEEEEeEEECCEEEEEEEEee-----------C-----------C-CC---
Confidence 11110 00000 000000000 0124678999999999999999872 0 0 00
Q ss_pred CCccccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 006963 252 SFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295 (623)
Q Consensus 252 ~~~~e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~ 295 (623)
.|++++...+..+|.++++|....
T Consensus 321 --------------------~F~~~dl~lL~~iA~~~A~Aie~a 344 (686)
T PRK15429 321 --------------------VFTTTNLKLLRQIAERVAIAVDNA 344 (686)
T ss_pred --------------------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 267788888889999999987543
No 94
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=91.91 E-value=0.19 Score=56.43 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccc
Q 006963 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSEL 552 (623)
Q Consensus 494 qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~ 552 (623)
-++..||+|++++.. ..|.|.+. ++|--.+.|+|||.||..++++-+.++|-+.+
T Consensus 30 NAlKEliENSLDA~S--T~I~V~vk--~GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 30 NALKELIENSLDANS--TSIDVLVK--DGGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred HHHHHHHhccccCCC--ceEEEEEe--cCCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 467889999998854 47888774 45556788999999999999999999987754
No 95
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=91.37 E-value=0.16 Score=59.85 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--CeEEEEEEEecCCeEEEEEeeCCCCCChhhHh--------hhcCCCccc-ccccccc
Q 006963 490 PALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM--------HSLTPFGSE-LFSENMV 558 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~--------~iFepF~~~-~~s~~~~ 558 (623)
.-|..++..||+||++-.-.| ..|.|.+. . ++ .|+|+|||.|||.+..+ -+|...+.+ +.... .
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~-~-dg--sIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~-~ 110 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIH-A-DG--SVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQN-S 110 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEc-C-CC--eEEEEEcCCcccCCcccccCCchhhheeeeecccCCCCCC-c
Confidence 578899999999999833333 68999886 2 33 69999999999987322 233222221 11100 0
Q ss_pred cCCCCCCcchhHHHHHHHHH
Q 006963 559 EDNMTWNFVAGLTVARELLE 578 (623)
Q Consensus 559 ~~~~~~GtGLGLaIvr~ive 578 (623)
+.-..+-.|.|++.+..+-+
T Consensus 111 ykvSgGlhGvG~svvNAlS~ 130 (756)
T PRK14939 111 YKVSGGLHGVGVSVVNALSE 130 (756)
T ss_pred ccccCCccCccceEeehccC
Confidence 10001237889998887766
No 96
>PTZ00130 heat shock protein 90; Provisional
Probab=90.90 E-value=0.34 Score=57.29 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=20.5
Q ss_pred eEEEEEEEecCCeEEEEEeeCCCCCChhhHhh
Q 006963 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543 (623)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (623)
.+.|++. .+...-.|+|.|||+||+.+++..
T Consensus 123 ~~~I~I~-~D~~~~tLtI~DnGIGMT~eEl~~ 153 (814)
T PTZ00130 123 KLEIRIS-ANKEKNILSITDTGIGMTKEDLIN 153 (814)
T ss_pred CceEEEE-ECCCCCEEEEEECCCCCCHHHHHH
Confidence 3444443 222334789999999999987654
No 97
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=90.80 E-value=6.3 Score=44.84 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=81.5
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCe-eeec------------cccc
Q 006963 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDI-VVLV------------GNFN 177 (623)
Q Consensus 111 ~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~-~~l~------------g~~~ 177 (623)
+..|.|+.++-+..++.+...++.+ .+++++... + .+..++.++.....+. ..-. |..-
T Consensus 13 L~~s~d~~e~L~~vl~~l~~~l~~~-~~~l~l~~~-----~--~l~~~as~gl~~~~~~~~~~~geGP~l~av~~~g~~v 84 (509)
T PRK05022 13 LSRGLPHQDRFQRLLTTLRQVLPCD-ASALLRLDG-----D--QLVPLAIDGLSPDVLGRRFALEEHPRLEAILRAGDPV 84 (509)
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCC-EEEEEecCC-----C--cEEEEEEcCCChHhhCCccCCCcchHHHHHHhcCCeE
Confidence 4556788888888899999998543 666776651 1 4566666664322100 0000 1111
Q ss_pred -cCcchhhhhhh--hhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCc
Q 006963 178 -MPAGLRAAEAA--LSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254 (623)
Q Consensus 178 -~~~~~~~~~~~--l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 254 (623)
++...+.|... ..........-...+.+||..++.++|+|.+.. . ++.
T Consensus 85 ~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~GvL~l~~-----------~-----------~~~------- 135 (509)
T PRK05022 85 RFPADSELPDPYDGLIPGVQESLPVHDCMGLPLFVDGRLIGALTLDA-----------L-----------DPG------- 135 (509)
T ss_pred EEecCCCCCcccccccccccccCCcceEEEEEEEECCEEEEEEEEee-----------C-----------CCC-------
Confidence 22111111100 000011122233679999999999999999882 1 110
Q ss_pred cccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 255 TESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNN 309 (623)
Q Consensus 255 ~e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q~~~~lqq~~~q~~ 309 (623)
.|+++....+..++..++.|....++...+++...+.+
T Consensus 136 -----------------~f~~~~~~~l~~~a~~~a~Al~~a~~~~~l~~~~~~~~ 173 (509)
T PRK05022 136 -----------------QFDAFSDEELRALAALAAATLRNALLIEQLESQAELPQ 173 (509)
T ss_pred -----------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15667777888899988888776665555555444433
No 98
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=90.25 E-value=5.4 Score=38.14 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.5
Q ss_pred CCCeEEEeeeeCCeEEEEEEEe
Q 006963 199 EQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 199 ~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
+++-+|+||+++|+++|+|-+.
T Consensus 113 s~SEIVvPi~~~g~~iGvlDiD 134 (163)
T COG1956 113 SNSEIVVPIFKDGKLIGVLDID 134 (163)
T ss_pred cCceEEEEEEECCEEEEEEecC
Confidence 3467999999999999999888
No 99
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=89.68 E-value=0.54 Score=55.15 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhc--------------CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhc
Q 006963 496 LSNLIEGALMRT--------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSL 545 (623)
Q Consensus 496 L~NLL~NAlk~t--------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iF 545 (623)
|+.||+||..+. ..++.+.|++. .+.....|.|.|||+||+.+++.+-+
T Consensus 30 lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~-~d~~~~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 30 LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVV-PDKENKTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEE-EcCCCCEEEEEECCCCCCHHHHHHHh
Confidence 556777777652 12345667665 34455689999999999998765543
No 100
>PLN03237 DNA topoisomerase 2; Provisional
Probab=89.53 E-value=0.51 Score=58.91 Aligned_cols=88 Identities=8% Similarity=0.080 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhc---CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHh--------hhcCCCcccccccccc
Q 006963 490 PALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM--------HSLTPFGSELFSENMV 558 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t---~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~--------~iFepF~~~~~s~~~~ 558 (623)
.-|..+|..+|+||+... +....|.|.+. ..++ .|+|+|||.|||-+... -||....++..-....
T Consensus 76 pGL~kifdEIldNAvDe~~r~g~~~~I~V~I~-~~~g--sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~ 152 (1465)
T PLN03237 76 PGLYKIFDEILVNAADNKQRDPKMDSLRVVID-VEQN--LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNE 152 (1465)
T ss_pred chhhhhHHHHhhhhHhHHhhcCCCCEEEEEEE-cCCC--EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCc
Confidence 345666666666666643 34468888886 2333 49999999999976432 2333333321100000
Q ss_pred cCCCCCCcchhHHHHHHHHHHc
Q 006963 559 EDNMTWNFVAGLTVARELLESY 580 (623)
Q Consensus 559 ~~~~~~GtGLGLaIvr~ive~~ 580 (623)
+.-..+-.|.|.++|.-+-+.+
T Consensus 153 yKvSGGlhGVGasvvNaLS~~f 174 (1465)
T PLN03237 153 KKTTGGRNGYGAKLTNIFSTEF 174 (1465)
T ss_pred ceeeccccccCccccccccCee
Confidence 0000123788988888776554
No 101
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.41 E-value=19 Score=34.70 Aligned_cols=96 Identities=20% Similarity=0.083 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCC--ChhhHhhhcCCCcccccccccccCCCCCCcchhHH
Q 006963 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLT 571 (623)
Q Consensus 494 qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI--~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLa 571 (623)
..+.||+-=|--.-|.||.+.+++. ..+..-+++|.-.|+-+ +++.++- +++...... ..+.-.-=+
T Consensus 116 kllLNl~lia~~aiPrGG~~~vtle-~~e~d~rfsi~akG~m~Rvppk~lel-----~~G~~~eE~-----vdahsVQpy 184 (214)
T COG5385 116 KLLLNLFLIAYGAIPRGGSLVVTLE-NPETDARFSIIAKGRMMRVPPKFLEL-----HSGEPPEEA-----VDAHSVQPY 184 (214)
T ss_pred HHHHHHHHHHcccCCCCCeeEEEee-cCCcCceEEEEecCccccCCHHHHhh-----hcCCCcccc-----CCCccccHH
Confidence 4567888877777899999999987 45555677777777654 4433321 333211110 113334445
Q ss_pred HHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEec
Q 006963 572 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608 (623)
Q Consensus 572 Ivr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP 608 (623)
..--+++..|++|.+... ..-..|+-|.|
T Consensus 185 Yt~lLa~eAgm~I~v~~~--------~e~iv~~A~v~ 213 (214)
T COG5385 185 YTLLLAEEAGMTISVHAT--------AERIVFTAWVV 213 (214)
T ss_pred HHHHHHHHcCCeEEEEec--------cceEEEEEecc
Confidence 556678999999999884 23677777765
No 102
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=88.25 E-value=27 Score=34.21 Aligned_cols=88 Identities=16% Similarity=0.018 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCC--ChhhHhhhcCCCcccccccccccCCCCCCcc
Q 006963 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMTQMHSLTPFGSELFSENMVEDNMTWNFV 567 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI--~~e~~~~iFepF~~~~~s~~~~~~~~~~GtG 567 (623)
....+++.|++-=|....|.||.|.|... ...+...+.|.=+|+-+ +++....+-..-... .-....
T Consensus 84 k~~vklllnl~l~a~~alprGG~i~V~~~-~~~~~~~~~v~a~G~~~~~~~~~~~~L~g~~~~~----------~l~~~~ 152 (182)
T PF10090_consen 84 KPEVKLLLNLLLCAEDALPRGGEITVSIE-GSEGDGGWRVRAEGPRARLDPDLWAALAGEDPEE----------DLDPRN 152 (182)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCEEEEEEe-ccCCCceEEEEEeccccCCCHHHHHHhcCCCCCC----------CCCHHh
Confidence 34458999999999999999999999876 45556678888888765 443333321110000 011334
Q ss_pred hhHHHHHHHHHHcCCEEEEEe
Q 006963 568 AGLTVARELLESYGCVVRVIS 588 (623)
Q Consensus 568 LGLaIvr~ive~~GG~I~v~S 588 (623)
.=-+....+++..|++|.+..
T Consensus 153 VQ~~~~~~la~~~G~~l~~~~ 173 (182)
T PF10090_consen 153 VQFYLLPLLAREAGRRLSVEA 173 (182)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 567888899999999999975
No 103
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=0.74 Score=52.75 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=21.9
Q ss_pred eEEEEEEEecCCeEEEEEeeCCCCCChhhHh
Q 006963 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQM 542 (623)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~ 542 (623)
.++|++. .+...-.|+|.|||+||..++..
T Consensus 62 ~~~I~i~-~Dk~~kTLtI~DNGIGMT~~Ev~ 91 (623)
T COG0326 62 DLRIRIS-FDKDNKTLTISDNGIGMTKDEVI 91 (623)
T ss_pred CceEEEE-EcccCCEEEEEeCCCCCCHHHHH
Confidence 4566665 34455689999999999988653
No 104
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=84.93 E-value=0.7 Score=53.87 Aligned_cols=87 Identities=9% Similarity=0.061 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHh--------hhcCCCcccccccccc
Q 006963 489 EPALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM--------HSLTPFGSELFSENMV 558 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t--~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~--------~iFepF~~~~~s~~~~ 558 (623)
...|.+++..+|+||++-. .....|.|.+. .++ .|+|+|||.|||-+... -+|.....+..-++..
T Consensus 32 ~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~--~dg--sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ 107 (637)
T TIGR01058 32 SKGLHHLVWEIVDNSVDEVLAGYADNITVTLH--KDN--SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGG 107 (637)
T ss_pred cchhheehhhhhcchhhhhhcCCCcEEEEEEc--CCC--eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCc
Confidence 4567777777777777632 23468888886 233 59999999999975332 1222222211000000
Q ss_pred cCCCCCCcchhHHHHHHHHHH
Q 006963 559 EDNMTWNFVAGLTVARELLES 579 (623)
Q Consensus 559 ~~~~~~GtGLGLaIvr~ive~ 579 (623)
+.-..+-.|.|++.+.-+-+.
T Consensus 108 ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 108 YKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred ccccCCcccccccccceeece
Confidence 100012378999988877664
No 105
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=84.11 E-value=1 Score=51.73 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccc
Q 006963 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSE 551 (623)
Q Consensus 492 L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~ 551 (623)
+.-++..|++|+++... ..|.|.+. +-|.=.|+|.|||.||++.+.+-+-.++++.
T Consensus 21 l~sAVKELvENSiDAGA--T~I~I~~k--dyG~d~IEV~DNG~GI~~~n~~~l~lkh~TS 76 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAGA--TAIDIKVK--DYGSDSIEVSDNGSGISATDFEGLALKHTTS 76 (672)
T ss_pred HHHHHHHHHhcCcccCC--ceeeEecC--CCCcceEEEecCCCCCCccchhhhhhhhhhh
Confidence 45789999999998854 47888885 2244579999999999988777666665553
No 106
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=83.78 E-value=1.4 Score=55.34 Aligned_cols=87 Identities=7% Similarity=0.043 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhc------CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHh--------hhcCCCcccccccc
Q 006963 491 ALRQALSNLIEGALMRT------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM--------HSLTPFGSELFSEN 556 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~--------~iFepF~~~~~s~~ 556 (623)
.|..+|..+|+||+.-. +....|.|.+. .+.+ .|+|+|||.|||-+... -+|....++..-..
T Consensus 57 GL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~-~d~g--~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd 133 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDKGGHRMTYIKVTID-EENG--EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDD 133 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEe-ccCC--eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCC
Confidence 45555555555555532 33468888886 2213 49999999999976432 23333333211000
Q ss_pred cccCCCCCCcchhHHHHHHHHHHc
Q 006963 557 MVEDNMTWNFVAGLTVARELLESY 580 (623)
Q Consensus 557 ~~~~~~~~GtGLGLaIvr~ive~~ 580 (623)
..+.-..+-.|.|..+|.-+-+.+
T Consensus 134 ~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 134 TEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred CceeeecccccCCccccccccceE
Confidence 000000123788988887766544
No 107
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=83.72 E-value=3.7 Score=46.66 Aligned_cols=100 Identities=21% Similarity=0.161 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCC-CC---------cCeeeeccccccCcchhh
Q 006963 115 PDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV-NA---------TDIVVLVGNFNMPAGLRA 184 (623)
Q Consensus 115 ~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~-~~---------~~~~~l~g~~~~~~~~~~ 184 (623)
.|.++=-...+..++..++.+ .|+|||..+. +..++|. |--.-. .+ +.++-+||-.+=|--..+
T Consensus 16 ~~~qe~Ld~iVr~i~~aM~tE-VCSvYl~~~d---~~~leL~--ATeGLnk~av~~~~l~~~eGLVG~v~~~aePlNLsd 89 (756)
T COG3605 16 LELQEALDIIVRDIALAMVTE-VCSVYLLRAD---RRVLELM--ATEGLNKPAVHLVQLAFGEGLVGLVGRSAEPLNLAD 89 (756)
T ss_pred cCHHHHHHHHHHHHHHHhhhh-heeEEEEcCC---CcEEEEE--eccccCccccceEEecCCCchhhhhhhccCCCChhh
Confidence 344455556677777788666 8899999822 2223332 221111 11 112223333333322222
Q ss_pred hhh---hhhcccccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 006963 185 AEA---ALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 185 ~~~---~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
+.. ..--..+++-.=+.-+-+|+++.++++|+||+.
T Consensus 90 AqsHPsF~Y~petgEE~Y~sFLGvPIi~~~r~lGVLVVQ 128 (756)
T COG3605 90 AQSHPSFKYLPETGEERYHSFLGVPIIRRGRLLGVLVVQ 128 (756)
T ss_pred hhhCCccccccccchHHHHHhhccceeecCceeEEEEEe
Confidence 211 111122222233457889999999999999998
No 108
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.74 E-value=6.8 Score=36.84 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCC
Q 006963 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~ 537 (623)
.+.-+...||+||+||... |.|.|.+. -......+.|.+.-++=.
T Consensus 63 svgYl~NELiENAVKfra~-geIvieas-l~s~~f~~kvsN~vd~~t 107 (184)
T COG5381 63 SVGYLANELIENAVKFRAT-GEIVIEAS-LYSHKFIFKVSNIVDLPT 107 (184)
T ss_pred hHHHHHHHHHHhhhcccCC-CcEEEEEE-eccceEEEEecccCCCcc
Confidence 3455678899999999765 68999887 555677787777654433
No 109
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=80.37 E-value=6.9 Score=35.15 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=38.2
Q ss_pred CCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccCHHHHH
Q 006963 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (623)
Q Consensus 200 ~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~ 279 (623)
...+++||+.++.++|.+++.. .... .. |++++..
T Consensus 115 ~~~l~vPl~~~~~~~G~l~~~~----------~~~~---------~~--------------------------~~~~e~~ 149 (175)
T COG2203 115 RSYLGVPLIAQGELLGLLCVHD----------SEPR---------RQ--------------------------WSEEELE 149 (175)
T ss_pred HHheeeeeeECCEeeEEeeeec----------cCCC---------CC--------------------------CCHHHHH
Confidence 4578999999999999999983 1100 11 4557777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006963 280 NAINICRSLAMAYVMDQ 296 (623)
Q Consensus 280 ~~~~ia~~lalA~~l~q 296 (623)
.++.++.++++|....+
T Consensus 150 ll~~la~~~a~ai~~~~ 166 (175)
T COG2203 150 LLEELAEQVAIAIERAR 166 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999998775443
No 110
>PLN03128 DNA topoisomerase 2; Provisional
Probab=78.62 E-value=3.3 Score=51.30 Aligned_cols=47 Identities=6% Similarity=0.110 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhc---CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhh
Q 006963 491 ALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT 540 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t---~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~ 540 (623)
.|..++..+|+||+.-. +....|.|.+. .+++ .|+|+|||.|||-+.
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~~~~I~V~i~-~~dg--sIsV~DnGrGIPv~i 101 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPSMDSLKVDID-VEQN--TISVYNNGKGIPVEI 101 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEE-cCCC--eEEEEecCccccCCC
Confidence 45566666666666533 33468888886 3223 599999999999763
No 111
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=75.85 E-value=2.8 Score=48.39 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccc
Q 006963 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSEL 552 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~ 552 (623)
..|.|++..|+-|.+.+.. ..|.|.+. -....+.|.|+|.||..+++..+-++||+.+
T Consensus 20 ~sla~~VeElv~NSiDA~A--t~V~v~V~---~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK 77 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAEA--TCVAVRVN---METFSVQVIDDGFGMGRDDLEKLGNRYFTSK 77 (1142)
T ss_pred HHHHHHHHHHHhhccccCc--eEEEEEec---CceeEEEEEecCCCccHHHHHHHHhhhhhhh
Confidence 4688999999999998854 46666664 2457899999999999999999999988854
No 112
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=75.06 E-value=1.9 Score=50.03 Aligned_cols=44 Identities=14% Similarity=0.319 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhc-CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhH
Q 006963 493 RQALSNLIEGALMRT-QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541 (623)
Q Consensus 493 ~qVL~NLL~NAlk~t-~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~ 541 (623)
.+|+.|-++||+.-. .....|.|.+. ++ .|+|+|||.|||-+..
T Consensus 51 ~EIldNavDe~~~~~~g~~~~I~V~i~---dg--sisV~dnGrGIPv~~h 95 (602)
T PHA02569 51 DEIIDNSVDEAIRTNFKFANKIDVTIK---NN--QVTVSDNGRGIPQAMV 95 (602)
T ss_pred ehhhhhhhhhhhccCCCCCcEEEEEEc---CC--EEEEEECCCcccCCcc
Confidence 355555555555411 12357877774 33 4999999999998643
No 113
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=70.91 E-value=0.64 Score=53.06 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhh--------hcCCCcccccccccccCCCCCC
Q 006963 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH--------SLTPFGSELFSENMVEDNMTWN 565 (623)
Q Consensus 494 qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~--------iFepF~~~~~s~~~~~~~~~~G 565 (623)
+|+.|-+++|+.- .+..|.|.+. .+ + .|+|.|||.|||-+..+. ||.....+-.=++..+.-..+=
T Consensus 43 EVvDNsiDEalaG--~~~~I~V~l~-~d-~--sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGL 116 (635)
T COG0187 43 EVVDNSIDEALAG--YADRIDVTLH-ED-G--SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGL 116 (635)
T ss_pred EeeechHhHHhhC--cCcEEEEEEc-CC-C--eEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCC
Confidence 3444444444432 3468888886 23 3 399999999999876433 4443333210011011000123
Q ss_pred cchhHHHHHHHHHH
Q 006963 566 FVAGLTVARELLES 579 (623)
Q Consensus 566 tGLGLaIvr~ive~ 579 (623)
.|.|.+.|..+-+.
T Consensus 117 HGVG~SVVNALS~~ 130 (635)
T COG0187 117 HGVGVSVVNALSTW 130 (635)
T ss_pred CccceEEEecccce
Confidence 78888888776553
No 114
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=68.59 E-value=53 Score=38.86 Aligned_cols=48 Identities=6% Similarity=0.002 Sum_probs=37.3
Q ss_pred CCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccCHHHHH
Q 006963 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (623)
Q Consensus 200 ~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~ 279 (623)
...+.+||...+.|+|.|++.. + +. . .|+++...
T Consensus 115 ~~~lgvPl~~~~~v~G~l~l~~-----------~-----------~~-~-----------------------~Ft~~d~~ 148 (686)
T PRK15429 115 GHYCLMPLAAEGHIFGGCEFIR-----------Y-----------DD-R-----------------------PWSEKEFN 148 (686)
T ss_pred cceEEeceeeCCeeEEEEEEEE-----------c-----------CC-C-----------------------CCCHHHHH
Confidence 4567799999999999999882 1 10 1 28888888
Q ss_pred HHHHHHHHHHHHHH
Q 006963 280 NAINICRSLAMAYV 293 (623)
Q Consensus 280 ~~~~ia~~lalA~~ 293 (623)
.+..+|...++|..
T Consensus 149 ll~~la~~a~~aie 162 (686)
T PRK15429 149 RLQTFTQIVSVVTE 162 (686)
T ss_pred HHHHHHHHHHHHHH
Confidence 99899999888763
No 115
>COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]
Probab=65.94 E-value=19 Score=38.58 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=16.1
Q ss_pred EEEeeeeCCeEEEEEEEe
Q 006963 203 VVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 203 lv~PL~~~~~v~G~Lv~~ 220 (623)
+=+|++++++|||++.+.
T Consensus 75 INLPi~~~~~vVGViGIT 92 (376)
T COG3835 75 INLPIRFDGKVVGVIGIT 92 (376)
T ss_pred CCcceEecCceEEEEecc
Confidence 458999999999999877
No 116
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=65.89 E-value=40 Score=31.40 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=17.3
Q ss_pred eEEEeeeeCCeEEEEEEEe
Q 006963 202 AVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 202 ~lv~PL~~~~~v~G~Lv~~ 220 (623)
-+-+|+.+++.++|++.+.
T Consensus 72 GinlPI~~~g~~iGviGIt 90 (135)
T PF05651_consen 72 GINLPIIFNGEVIGVIGIT 90 (135)
T ss_pred ceeeeEEECCEEEEEEEEe
Confidence 3679999999999999988
No 117
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=63.07 E-value=1.4 Score=52.77 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhH
Q 006963 489 EPALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t--~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~ 541 (623)
..-|.+++..+|+||+.-. ..+..|.|.+. . ++ .|+|+|||.|||-+..
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~-~-Dg--sItV~DnGRGIPvd~h 177 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGECNKITVVLH-K-DG--SVEISDNGRGIPCDVS 177 (903)
T ss_pred CCcceEEEEEEeeccchhhccCCCcEEEEEEc-C-CC--eEEEEeCCcccccccc
Confidence 3456666666777777632 23468888885 2 33 4999999999997543
No 118
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.75 E-value=32 Score=27.43 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=27.0
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 006963 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDR 356 (623)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~r 356 (623)
.+.+...-||+.|-|.+|.|+.++ ...+...++++.+..+...
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllql-----g~~~~a~eYi~~~~~~~~~ 55 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQL-----GKYEEAKEYIKELSKDLQQ 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Confidence 445566679999999999998875 2333444454444444333
No 119
>PRK13558 bacterio-opsin activator; Provisional
Probab=59.23 E-value=27 Score=40.70 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=38.0
Q ss_pred CeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccCHHHHHH
Q 006963 201 RAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLN 280 (623)
Q Consensus 201 ~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~~ 280 (623)
..+++||.+++.++|+|++.. . ++- .|+.+.+..
T Consensus 390 s~~~vPL~~~g~~~GvL~v~~-----------~-----------~~~------------------------~f~~~e~~l 423 (665)
T PRK13558 390 AVAAVPLVYRETTYGVLVVYT-----------A-----------EPD------------------------EIDDRERVV 423 (665)
T ss_pred eEEEEeEEECCEEEEEEEEee-----------C-----------CCC------------------------CCCHHHHHH
Confidence 788999999999999999982 1 110 177788889
Q ss_pred HHHHHHHHHHHHH
Q 006963 281 AINICRSLAMAYV 293 (623)
Q Consensus 281 ~~~ia~~lalA~~ 293 (623)
++.++.+++.|..
T Consensus 424 l~~la~~ia~aI~ 436 (665)
T PRK13558 424 LEALGRAVGAAIN 436 (665)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 120
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=41.63 E-value=27 Score=40.10 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=37.9
Q ss_pred CeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCC-ccc--cccc----ccccCCCCCCcchhHHHHHHHHH
Q 006963 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF-GSE--LFSE----NMVEDNMTWNFVAGLTVARELLE 578 (623)
Q Consensus 511 g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF-~~~--~~s~----~~~~~~~~~GtGLGLaIvr~ive 578 (623)
....|++. .+.+.-.++|.|+|+||..+++..-...- -+| ..-. .....++.+-+|.|.+-+.-.++
T Consensus 89 ~~l~I~i~-~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAd 162 (656)
T KOG0019|consen 89 PELEIRII-TNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVAD 162 (656)
T ss_pred cceeEEec-cCCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhh
Confidence 45666665 34455789999999999988764321110 000 0000 11112244568999887776655
No 121
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=41.01 E-value=38 Score=37.93 Aligned_cols=45 Identities=27% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhH
Q 006963 496 LSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541 (623)
Q Consensus 496 L~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~ 541 (623)
|..||+||-.+-. ....+.|.+. .+...-.+.|.|+|+||..+++
T Consensus 100 LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK-~Dke~klLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 100 LRELISNASDALDKIRLLALTDKDVLGETEELEIKIK-ADKEKKLLHITDTGIGMTREDL 158 (785)
T ss_pred HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEe-echhhCeeeEecccCCccHHHH
Confidence 5567777765421 1124445544 3334456899999999988754
No 122
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=39.52 E-value=66 Score=38.80 Aligned_cols=137 Identities=9% Similarity=0.016 Sum_probs=89.7
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEe-cCCceEEEeCHHHHHHHHHHHHHHHHh--hcCCCCe--EEEEEEE--
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALM--RTQVGGK--VEIVSAA-- 519 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~-~~~~~~V~~D~~~L~qVL~NLL~NAlk--~t~~gg~--I~I~~~~-- 519 (623)
.....+..++...+.............+.+.. ...+..+..+..++.|++.+...++.+ ++..+.. +.+....
T Consensus 457 ~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 536 (786)
T KOG0519|consen 457 SIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLG 536 (786)
T ss_pred hhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecccC
Confidence 34467888888877777666533444444442 345556777777789999999999998 6666543 2222210
Q ss_pred ------------------ecCC-eEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHc
Q 006963 520 ------------------APAG-DALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY 580 (623)
Q Consensus 520 ------------------~~~~-~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~ 580 (623)
...+ .+.+.+.+++.++...+....+..|.+........ ..+.+++++.|.+..+.+
T Consensus 537 ~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 612 (786)
T KOG0519|consen 537 ISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKL----SSGSGLSLALCPENSQLM 612 (786)
T ss_pred ccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhccccchhhc----ccccccccccchhhHHhh
Confidence 0012 46778888888887777776666555543222211 236889999999999999
Q ss_pred CCEEEEE
Q 006963 581 GCVVRVI 587 (623)
Q Consensus 581 GG~I~v~ 587 (623)
+|.+.+.
T Consensus 613 ~~~~~~~ 619 (786)
T KOG0519|consen 613 EGNIGLV 619 (786)
T ss_pred hcccccc
Confidence 9999886
No 123
>PRK04158 transcriptional repressor CodY; Validated
Probab=37.01 E-value=3.2e+02 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCCCCCeEEEeeeeCCeEEEEEEEe
Q 006963 196 VVPEQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 196 ~~~~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
..+.....++|+.-.|.-+|.|++.
T Consensus 106 ~~~~~~~tIvPI~ggGeRLGTLvl~ 130 (256)
T PRK04158 106 LFPDKLTTIVPIIGGGERLGTLILA 130 (256)
T ss_pred cccCceEEEEEEecCCeEEEEEEEE
Confidence 3445568999999999999999998
No 124
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=32.05 E-value=2.6e+02 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHhh
Q 006963 315 LVEQIRGPLSSIQTLSKMLSLH 336 (623)
Q Consensus 315 lsHELRtPLtaI~~~a~lL~~~ 336 (623)
|.|-+||-|+.+.+++.+-.+.
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~ 23 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARS 23 (83)
T ss_pred chhHHHHHHHHHHHHHHHHccc
Confidence 5799999999999888776543
No 125
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=31.14 E-value=92 Score=35.11 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=70.8
Q ss_pred eHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHh---hcCCCCeEEEEEEEecCCeEEE
Q 006963 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM---RTQVGGKVEIVSAAAPAGDALV 527 (623)
Q Consensus 451 ~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk---~t~~gg~I~I~~~~~~~~~v~I 527 (623)
++...++.++..++... .....+.. ..-..|+-.| ..|+..+|.||+- |+..++.|.|.+. + + +|
T Consensus 237 ~l~~~v~~~i~fikrn~---~~~~~v~~-l~r~~v~dyP---~~alREai~NAv~HRDYs~~~~~v~I~iy--d-D--Ri 304 (467)
T COG2865 237 NLPEQVERAISFIKRNL---NVPYVVEG-LRRVEVWDYP---LEALREAIINAVIHRDYSIRGRNVHIEIY--D-D--RI 304 (467)
T ss_pred CHHHHHHHHHHHHHHhc---CCceeecc-eeEeecccCC---HHHHHHHHHHHHHhhccccCCCceEEEEE--C-C--eE
Confidence 56777777777776544 12222321 1111122222 2466777888886 5777678999886 2 2 38
Q ss_pred EEeeCCCCCChhhHhhhcC--CCcccccccccccC-CCCCCcchhHHHHHHHHHHcCCE-EEEEeCCCccCcCCCCeEEE
Q 006963 528 VIDDDGPDMHYMTQMHSLT--PFGSELFSENMVED-NMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGSGGTRV 603 (623)
Q Consensus 528 ~V~D~G~GI~~e~~~~iFe--pF~~~~~s~~~~~~-~~~~GtGLGLaIvr~ive~~GG~-I~v~S~~~~~~~~g~~GT~f 603 (623)
.|++.|.-.+.-....++. ++-+-..-.+-..+ +--..-|-|..-++++++.||.. ..+.. + ...|
T Consensus 305 eI~NPGgl~~gi~~~~l~~~~s~~RNp~LA~~l~~~~liE~~GSGi~rm~~~~~~~gl~~p~f~~--------~--~~~~ 374 (467)
T COG2865 305 EITNPGGLPPGITPEDLLKGRSKSRNPVLAKVLRDMGLIEERGSGIRRMFDLMEENGLPKPEFEE--------D--NDYV 374 (467)
T ss_pred EEECCCCCCCCCChhHcccCCCcccCHHHHHHHHHhhhHHHhCccHHHHHHHHHHcCCCCceeec--------c--CCeE
Confidence 8999773322222333322 22111000000000 00113556788889999999875 33332 2 3456
Q ss_pred EEEecCCC
Q 006963 604 ELWLPSPA 611 (623)
Q Consensus 604 ~I~LP~~~ 611 (623)
++.++...
T Consensus 375 ~~~~~~~~ 382 (467)
T COG2865 375 TVILHGKG 382 (467)
T ss_pred EEEEeccc
Confidence 66666543
No 126
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=29.02 E-value=2.3e+02 Score=30.80 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=17.4
Q ss_pred CeEEEeeeeCCeEEEEEEEe
Q 006963 201 RAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 201 ~~lv~PL~~~~~v~G~Lv~~ 220 (623)
.-+-+|+.+++.++|++.+.
T Consensus 76 ~GiN~Pi~~~~~viGvIgIt 95 (385)
T PRK11477 76 QGINLPLRLEGEIVGVIGLT 95 (385)
T ss_pred cCceeeEEECCEEEEEEecC
Confidence 34689999999999999876
No 127
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=27.43 E-value=3.9e+02 Score=26.15 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.0
Q ss_pred CCCCeEEEeeeeCCeEEEEEEEe
Q 006963 198 PEQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 198 ~~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
+..-..++|+.-.|.-+|.|++.
T Consensus 106 ~~k~~tivPI~g~GeRLGTLvl~ 128 (177)
T PF06018_consen 106 PNKYTTIVPIYGGGERLGTLVLA 128 (177)
T ss_dssp SSSEEEEEEEEETTEEEEEEEEE
T ss_pred cCCcEEEEEEeeCCeEEEEEEEE
Confidence 44456799999999999999999
No 128
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=25.01 E-value=77 Score=37.85 Aligned_cols=55 Identities=9% Similarity=0.188 Sum_probs=38.9
Q ss_pred eEEEeCHHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEeeCCCCCChhhH
Q 006963 483 LLVAVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ 541 (623)
Q Consensus 483 ~~V~~D~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~ 541 (623)
....+-..-|.+|+..++.||.. -..+ ..|.+.+. . ..-.|.|+|||.|||-+..
T Consensus 45 ~~~~t~~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~-~--e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 45 MVQRTYVPGLYKIFDEILVNAAD-KQRDPKMNTIKVTID-K--EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred eeEeecCCcHHHHHHHHhhcccc-cccCCCcceeEEEEc-c--CCCEEEEEeCCCcceeeec
Confidence 33445666789999999999998 3222 46777775 2 2346999999999976543
No 129
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=24.64 E-value=56 Score=22.43 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=11.9
Q ss_pred cCCeEEEEEeeCCCC
Q 006963 521 PAGDALVVIDDDGPD 535 (623)
Q Consensus 521 ~~~~v~I~V~D~G~G 535 (623)
.++...|+|.|+||-
T Consensus 10 TDgn~qITIeD~GPK 24 (30)
T PF07492_consen 10 TDGNFQITIEDTGPK 24 (30)
T ss_pred cCCCcEEEEecCCCe
Confidence 356689999999973
No 130
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=22.38 E-value=6.5e+02 Score=23.55 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=18.0
Q ss_pred CeEEEeeeeCCeEEEEEEEe
Q 006963 201 RAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 201 ~~lv~PL~~~~~v~G~Lv~~ 220 (623)
+.-++|++++++++|+|..+
T Consensus 105 ~~~~~PI~~~~~vIaVl~~~ 124 (145)
T PF12282_consen 105 RQEVVPIRRNGRVIAVLIRE 124 (145)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 47899999999999999966
Done!