Query 006963
Match_columns 623
No_of_seqs 496 out of 3721
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 1.7E-34 5.7E-39 292.0 33.1 233 300-612 12-250 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 3.2E-32 1.1E-36 275.9 32.5 234 294-613 26-259 (268)
3 3d36_A Sporulation kinase B; G 100.0 1E-31 3.4E-36 267.4 25.4 218 305-613 11-228 (244)
4 3jz3_A Sensor protein QSEC; he 100.0 4.6E-33 1.6E-37 273.2 15.1 218 308-612 2-219 (222)
5 3a0r_A Sensor protein; four he 100.0 7.4E-31 2.5E-35 275.0 23.5 215 307-611 131-346 (349)
6 4fpp_A Phosphotransferase; fou 100.0 1.8E-30 6.2E-35 262.9 24.1 197 311-609 49-247 (247)
7 2btz_A Pyruvate dehydrogenase 100.0 2.9E-30 9.8E-35 278.8 23.6 222 310-612 97-352 (394)
8 2e0a_A Pyruvate dehydrogenase 100.0 1E-29 3.6E-34 274.5 26.0 224 310-611 97-351 (394)
9 1gkz_A [3-methyl-2-oxobutanoat 100.0 8.2E-30 2.8E-34 274.6 25.0 227 305-613 118-376 (388)
10 2q8g_A [pyruvate dehydrogenase 100.0 1.2E-29 4E-34 275.3 23.3 157 447-611 191-364 (407)
11 1y8o_A [pyruvate dehydrogenase 100.0 1.2E-29 4.1E-34 276.4 22.5 157 447-611 201-375 (419)
12 1b3q_A Protein (chemotaxis pro 99.9 1.1E-24 3.7E-29 234.4 21.1 202 307-611 9-249 (379)
13 1id0_A PHOQ histidine kinase; 99.9 6E-24 2E-28 196.8 20.8 146 448-612 2-147 (152)
14 1ysr_A Sensor-type histidine k 99.9 4.2E-24 1.4E-28 197.9 19.5 146 446-610 4-149 (150)
15 3a0y_A Sensor protein; ATP-LID 99.9 7.2E-24 2.5E-28 195.8 20.5 146 447-611 3-149 (152)
16 3sl2_A Sensor histidine kinase 99.9 1.3E-23 4.4E-28 200.4 17.1 153 449-613 2-155 (177)
17 1bxd_A ENVZ(290-450), protein 99.9 3.8E-23 1.3E-27 193.9 17.6 148 446-613 6-153 (161)
18 1r62_A Nitrogen regulation pro 99.9 3.5E-23 1.2E-27 192.6 14.2 144 447-610 5-159 (160)
19 3ehh_A Sensor kinase (YOCF pro 99.9 4.5E-22 1.5E-26 195.2 22.7 125 449-610 91-216 (218)
20 1i58_A Chemotaxis protein CHEA 99.9 4.4E-22 1.5E-26 191.8 16.5 150 447-609 2-188 (189)
21 3ehg_A Sensor kinase (YOCF pro 99.8 1.8E-18 6.2E-23 156.5 13.8 124 450-610 2-126 (128)
22 3zxo_A Redox sensor histidine 99.8 2.5E-18 8.4E-23 154.8 13.7 125 448-610 3-128 (129)
23 3zxq_A Hypoxia sensor histidin 99.7 4.1E-17 1.4E-21 146.0 14.5 121 451-610 2-123 (124)
24 1th8_A Anti-sigma F factor; SP 99.7 1.6E-16 5.5E-21 146.5 12.4 105 487-613 35-142 (145)
25 1mu5_A Type II DNA topoisomera 99.6 3.8E-15 1.3E-19 163.8 12.4 117 484-610 25-148 (471)
26 2zbk_B Type 2 DNA topoisomeras 99.6 5.6E-15 1.9E-19 164.4 12.4 117 483-609 22-146 (530)
27 2q2e_B Type 2 DNA topoisomeras 99.4 9.8E-14 3.3E-18 156.6 5.7 119 484-610 30-154 (621)
28 1h7s_A PMS1 protein homolog 2; 98.6 6.5E-08 2.2E-12 103.1 9.3 81 491-577 34-118 (365)
29 1kij_A DNA gyrase subunit B; t 98.5 1.3E-07 4.6E-12 101.5 6.6 88 486-579 31-126 (390)
30 1b63_A MUTL; DNA mismatch repa 98.4 6.3E-07 2.2E-11 94.3 10.7 82 491-576 24-107 (333)
31 3na3_A DNA mismatch repair pro 98.4 9.9E-07 3.4E-11 93.1 10.7 82 491-576 28-111 (348)
32 3ke6_A Protein RV1364C/MT1410; 98.4 7.1E-07 2.4E-11 96.1 9.3 90 489-611 295-387 (399)
33 3h4l_A DNA mismatch repair pro 98.2 3.4E-06 1.2E-10 89.7 9.6 82 491-576 25-108 (367)
34 1ixm_A SPO0B, protein (sporula 98.1 2.8E-05 9.6E-10 75.4 12.7 76 470-550 88-171 (192)
35 3zcc_A HAMP, osmolarity sensor 98.0 5.2E-05 1.8E-09 64.9 10.7 67 294-366 46-112 (114)
36 2wer_A ATP-dependent molecular 97.8 7.9E-06 2.7E-10 80.9 4.0 56 494-550 29-98 (220)
37 2ior_A Chaperone protein HTPG; 97.5 4.5E-05 1.5E-09 76.2 3.9 54 494-550 50-119 (235)
38 1qy5_A Endoplasmin; GRP94, NEC 97.5 3.4E-05 1.2E-09 78.6 2.4 52 495-547 32-97 (269)
39 1yc1_A HSP 86, heat shock prot 97.5 0.00012 4E-09 74.5 6.3 83 494-577 71-173 (264)
40 3mmh_A FRMSR, methionine-R-sul 97.3 0.0023 7.8E-08 60.4 12.6 131 109-296 24-164 (167)
41 1s16_A Topoisomerase IV subuni 97.2 0.00058 2E-08 73.1 8.8 83 489-578 33-124 (390)
42 3o5y_A Sensor protein; GAF dom 97.1 0.0032 1.1E-07 58.9 11.2 125 116-294 5-143 (165)
43 3zrx_A AF1503 protein, osmolar 97.1 0.0025 8.5E-08 54.0 9.6 65 295-365 47-111 (115)
44 3trc_A Phosphoenolpyruvate-pro 97.0 0.0069 2.3E-07 54.8 12.7 130 112-294 18-161 (171)
45 2zmf_A CAMP and CAMP-inhibited 97.0 0.0026 9E-08 58.6 9.7 131 112-293 24-175 (189)
46 3ksh_A Putative uncharacterize 97.0 0.0094 3.2E-07 55.8 13.1 99 109-220 24-133 (160)
47 3t0h_A Heat shock protein HSP 96.9 0.00057 1.9E-08 67.9 4.7 83 494-577 35-137 (228)
48 3oov_A Methyl-accepting chemot 96.9 0.024 8.2E-07 51.0 15.1 132 111-293 11-161 (169)
49 1vhm_A Protein YEBR; structura 96.9 0.007 2.4E-07 58.5 11.8 125 109-292 36-171 (195)
50 3e0y_A Conserved domain protei 96.9 0.0075 2.6E-07 55.0 11.4 135 110-297 23-169 (181)
51 3hcy_A Putative two-component 96.8 0.0065 2.2E-07 54.3 10.4 130 114-296 1-141 (151)
52 3k2n_A Sigma-54-dependent tran 96.8 0.022 7.6E-07 51.9 13.8 136 111-300 15-172 (177)
53 4glq_A Methyl-accepting chemot 96.7 0.016 5.5E-07 54.4 12.6 33 111-144 6-38 (171)
54 3ci6_A Phosphoenolpyruvate-pro 96.7 0.022 7.4E-07 50.8 12.9 131 111-294 19-163 (171)
55 3rfb_A Putative uncharacterize 96.7 0.0064 2.2E-07 57.6 9.6 99 109-220 25-134 (171)
56 1y4s_A Chaperone protein HTPG; 96.6 0.0042 1.5E-07 69.3 9.2 81 494-577 30-134 (559)
57 3p01_A Two-component response 96.6 0.012 4E-07 55.0 10.5 128 111-293 39-178 (184)
58 2e4s_A CAMP and CAMP-inhibited 96.5 0.029 9.9E-07 51.6 12.8 54 198-296 125-178 (189)
59 1ei1_A DNA gyrase B, GYRB; ATP 96.5 0.0053 1.8E-07 65.7 8.6 82 491-578 34-127 (391)
60 2w3g_A DOSS, two component sen 96.5 0.036 1.2E-06 48.7 12.8 126 113-293 3-144 (153)
61 2cg9_A ATP-dependent molecular 96.3 0.0042 1.4E-07 70.6 6.7 50 495-547 30-95 (677)
62 1zxm_A TOPO IIA ATPase, DNA to 96.3 0.0095 3.3E-07 63.9 9.0 85 489-577 50-146 (400)
63 3peh_A Endoplasmin homolog; st 96.2 0.0017 5.8E-08 66.2 2.8 48 495-543 50-111 (281)
64 2vjw_A GAF-B, GAF family prote 96.2 0.06 2E-06 49.0 13.0 52 200-296 85-136 (149)
65 1mc0_A 3',5'-cyclic nucleotide 96.1 0.092 3.2E-06 54.2 15.5 100 113-220 24-137 (368)
66 3dba_A CONE CGMP-specific 3',5 96.1 0.026 8.9E-07 52.8 10.2 135 110-295 15-174 (180)
67 2o1u_A Endoplasmin; GRP94, HSP 96.0 0.004 1.4E-07 70.7 4.8 51 494-547 48-114 (666)
68 3fv5_A DNA topoisomerase 4 sub 96.0 0.0048 1.6E-07 60.0 4.7 79 493-577 19-109 (201)
69 2ioq_A Chaperone protein HTPG; 95.9 0.0053 1.8E-07 69.4 5.0 81 494-577 30-134 (624)
70 2gqp_A Endoplasmin; GRP94, HSP 95.9 0.0046 1.6E-07 61.6 3.7 54 494-550 35-104 (236)
71 4emv_A DNA topoisomerase IV, B 95.8 0.0084 2.9E-07 59.3 5.5 85 489-578 38-132 (226)
72 1f5m_A GAF; CGMP binding, sign 95.8 0.063 2.1E-06 50.9 11.3 103 109-220 34-151 (180)
73 1pvg_A DNA topoisomerase II; G 95.8 0.018 6.2E-07 62.0 8.3 85 490-578 63-159 (418)
74 4duh_A DNA gyrase subunit B; s 95.6 0.0081 2.8E-07 59.2 4.5 84 490-578 34-128 (220)
75 2qyb_A Membrane protein, putat 95.6 0.11 3.9E-06 47.4 12.1 134 111-295 12-159 (181)
76 3zq5_A Phytochrome-like protei 95.6 0.57 1.9E-05 51.8 19.4 30 114-144 150-179 (520)
77 1ykd_A Adenylate cyclase; GAF 95.4 0.43 1.5E-05 49.8 17.1 140 117-294 27-184 (398)
78 2lb5_A Sensor histidine kinase 95.3 0.45 1.5E-05 44.9 15.6 34 110-144 24-57 (208)
79 3ttz_A DNA gyrase subunit B; p 95.2 0.031 1.1E-06 54.1 6.8 48 488-539 28-77 (198)
80 3nhq_A Bacteriophytochrome; ph 95.1 0.51 1.8E-05 51.9 17.2 32 112-144 135-166 (505)
81 3cwv_A DNA gyrase, B subunit, 94.7 0.024 8.2E-07 60.1 4.8 81 488-577 27-109 (369)
82 3ibj_A CGMP-dependent 3',5'-cy 94.4 0.5 1.7E-05 53.9 15.5 99 114-220 26-137 (691)
83 1ykd_A Adenylate cyclase; GAF 94.4 0.27 9.3E-06 51.4 12.3 150 114-297 212-379 (398)
84 2ool_A Sensor protein; bacteri 94.3 0.5 1.7E-05 49.3 13.8 32 112-144 157-188 (337)
85 3ibj_A CGMP-dependent 3',5'-cy 94.3 0.12 4.1E-06 59.0 10.0 157 114-324 194-367 (691)
86 3o0i_A HSP90AA1 protein; HSP90 94.2 0.034 1.2E-06 55.9 4.6 51 494-545 63-127 (256)
87 3ied_A Heat shock protein; HSP 94.1 0.026 8.9E-07 56.6 3.4 62 512-576 120-188 (272)
88 4eho_A Bacteriophytochrome, PA 93.8 0.78 2.7E-05 51.9 15.4 32 112-144 142-173 (635)
89 1mc0_A 3',5'-cyclic nucleotide 93.7 0.57 1.9E-05 48.1 12.9 124 115-294 195-337 (368)
90 3lnu_A Topoisomerase IV subuni 93.4 0.06 2.1E-06 57.7 4.9 82 489-578 52-143 (408)
91 3cit_A Sensor histidine kinase 93.3 1.1 3.7E-05 41.7 12.5 119 117-296 29-149 (160)
92 3nmq_A Heat shock protein HSP 93.0 0.075 2.6E-06 52.9 4.6 48 494-542 42-103 (239)
93 4e04_A Bacteriophytochrome (li 92.1 1.4 4.9E-05 45.6 13.0 32 112-144 144-175 (327)
94 3s7o_A Bacteriophytochrome; bi 91.9 2.6 8.8E-05 44.0 14.6 32 112-144 162-193 (343)
95 2k2n_A Sensor protein, SYB-CPH 91.6 2.7 9.4E-05 38.1 13.2 26 118-144 2-27 (172)
96 4gfh_A DNA topoisomerase 2; to 90.7 0.55 1.9E-05 56.8 9.3 86 490-578 58-154 (1177)
97 3eea_A GAF domain/HD domain pr 89.6 3.8 0.00013 37.0 11.4 127 109-293 10-155 (162)
98 3bjc_A CGMP-specific 3',5'-cyc 77.7 0.46 1.6E-05 55.9 0.0 35 109-144 160-194 (878)
99 4eu0_A PELD; C-DI-GMP, signali 73.1 20 0.00069 36.5 10.9 90 117-220 24-124 (298)
100 3bjc_A CGMP-specific 3',5'-cyc 70.0 0.92 3.1E-05 53.3 0.0 32 112-144 345-376 (878)
101 2w1r_A Spovt, stage V sporulat 21.3 68 0.0023 27.7 3.5 22 199-220 75-96 (123)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=1.7e-34 Score=292.02 Aligned_cols=233 Identities=19% Similarity=0.278 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 006963 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR 377 (623)
Q Consensus 300 ~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~--~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~ 377 (623)
.+++..+.+.+|+++++|||||||++|.+++++|...... .+..+++++.|..++++|.++++++.++..+...
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~---- 87 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERK---- 87 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----
Confidence 3445555668999999999999999999999999876532 3456788999999999999999999654221000
Q ss_pred hhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHH
Q 006963 378 YNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLG 457 (623)
Q Consensus 378 ~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~ 457 (623)
......+++++.++++
T Consensus 88 ----------------------------------------------------------------~~~~~~~~~~l~~~~~ 103 (258)
T 2c2a_A 88 ----------------------------------------------------------------SLQINREKVDLCDLVE 103 (258)
T ss_dssp ----------------------------------------------------------------CCCCCCEEEEHHHHHH
T ss_pred ----------------------------------------------------------------CccCccceecHHHHHH
Confidence 0001257899999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CCceEEEeCHHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEeeCC
Q 006963 458 DLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDG 533 (623)
Q Consensus 458 ~ll~~~~~~a~~~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G 533 (623)
+++..+...+..+++.+.+... +.+..+.+|+..|.+||.|||+||+||++.+ +.|.|.+. ..++.+.|.|.|+|
T Consensus 104 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~-~~~~~~~i~V~D~G 182 (258)
T 2c2a_A 104 SAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVEDNG 182 (258)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEE-EETTEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEe-cCCCeEEEEEEecC
Confidence 9999999998888888887743 4556789999999999999999999998765 56888887 56678999999999
Q ss_pred CCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 534 ~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
+||+++.++++|+|||+.+..... ...|+||||+|||++++.|||+|++.|.+ +. ||+|+|+||....
T Consensus 183 ~Gi~~~~~~~if~~f~~~~~~~~~----~~~G~GLGL~i~~~iv~~~gG~i~v~s~~------~~-Gt~f~i~lP~~~~ 250 (258)
T 2c2a_A 183 IGIPDHAKDRIFEQFYRVDSSLTY----EVPGTGLGLAITKEIVELHGGRIWVESEV------GK-GSRFFVWIPKDRA 250 (258)
T ss_dssp SCCCGGGTTGGGSTTCCCC-------------CCCTHHHHHHHHHHTTCEEEEEEET------TT-EEEEEEEEECCC-
T ss_pred CCCCHHHHHhhccccccCCCCCCC----CCCCcchHHHHHHHHHHHcCCEEEEEecC------CC-CcEEEEEeeCCCC
Confidence 999999999999999987533221 12399999999999999999999999975 54 9999999998653
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=3.2e-32 Score=275.86 Aligned_cols=234 Identities=21% Similarity=0.251 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 006963 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (623)
Q Consensus 294 l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~ 373 (623)
+.++.+.+++..+.++++++.++|||||||++|.++++++.+.....+..++.++.|....+++.++++++.+.......
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34555566667777789999999999999999999999998766666777889999999999999999998664220000
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHH
Q 006963 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (623)
Q Consensus 374 ~I~~~~~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ 453 (623)
......+++++.
T Consensus 106 --------------------------------------------------------------------~~~~~~~~~~l~ 117 (268)
T 4ew8_A 106 --------------------------------------------------------------------EMALEIEDIRVS 117 (268)
T ss_dssp --------------------------------------------------------------------CCCCCCEEEEHH
T ss_pred --------------------------------------------------------------------CcceeeeeccHH
Confidence 001135789999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCC
Q 006963 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (623)
Q Consensus 454 ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G 533 (623)
+++..++..+...+..+++.+.+........+.+|+..|.+||.|||+||++|++.++.|.|.+. ..++.+.|.|.|+|
T Consensus 118 ~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~-~~~~~~~i~V~D~G 196 (268)
T 4ew8_A 118 DLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSAR-RALGEVRLDVSDTG 196 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCTTSCEEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEE-ECSSEEEEEEEESS
T ss_pred HHHHHHHHHHHhhhhccCceEEEEcCCCCceEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEE-ecCCEEEEEEEcCC
Confidence 99999999999988888899988866555689999999999999999999999998899999998 66788999999999
Q ss_pred CCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCCC
Q 006963 534 PDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 613 (623)
Q Consensus 534 ~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~~ 613 (623)
+||+++.+.++|+||++.+ ..|+||||++||++++.|||+|++.+.+ +. ||+|+|+||.....
T Consensus 197 ~Gi~~~~~~~if~~~~~~~----------~~g~GlGL~i~~~~~~~~gG~i~i~s~~------~~-Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 197 RGVPFHVQAHIFDRFVGRD----------RGGPGLGLALVKALVELHGGWVALESEP------GN-GSTFTCHLPETQQP 259 (268)
T ss_dssp CCCCHHHHTTTTSTTCCCS----------SCCCTTHHHHHHHHHHHTTCEEEEEECT------TS-CEEEEEEEECCC--
T ss_pred CCCCHHHHHHHHHHHhcCC----------CCCCcccHHHHHHHHHHcCCEEEEEecC------CC-CEEEEEEecCCCCC
Confidence 9999999999999999753 1299999999999999999999999975 54 99999999987643
No 3
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=100.00 E-value=1e-31 Score=267.43 Aligned_cols=218 Identities=19% Similarity=0.240 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHh
Q 006963 305 SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384 (623)
Q Consensus 305 ~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~ 384 (623)
....+++++.++|||||||++|.+++++|.......+..+++++.+..+.+++.++++++.+
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~------------------ 72 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLT------------------ 72 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHS------------------
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 44457889999999999999999999999876655566678888899999999888888722
Q ss_pred hhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHH
Q 006963 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVR 464 (623)
Q Consensus 385 ~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~ 464 (623)
+++......+++++..+++.++..+.
T Consensus 73 ------------------------------------------------------~~~~~~~~~~~~~l~~~l~~~~~~~~ 98 (244)
T 3d36_A 73 ------------------------------------------------------FAKPAPETPEKLNVKLEIERVIDILR 98 (244)
T ss_dssp ------------------------------------------------------SCCSSCCCCEEEEHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHhcccCCcchhhHHHHHHHHHHHHH
Confidence 22333335688999999999999999
Q ss_pred HHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhh
Q 006963 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHS 544 (623)
Q Consensus 465 ~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~i 544 (623)
..+..+++.+.+.. .+..+.+|+..|.+||.|||+||++|++.++.|.|.+. ..++.+.|.|.|+|+||+++...++
T Consensus 99 ~~~~~~~i~~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~-~~~~~~~i~i~D~G~gi~~~~~~~i 175 (244)
T 3d36_A 99 PLANMSCVDIQATL--APFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVS-IDNGRVLIRIADTGVGMTKEQLERL 175 (244)
T ss_dssp HHHTTTTEEEEEEC--CCCEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEE-EETTEEEEEEEECSSCCCHHHHHHT
T ss_pred HHHHhcCeEEeccC--CCceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEE-EeCCEEEEEEEecCCCCCHHHHHHH
Confidence 98876666665553 34678999999999999999999999988899999998 5678899999999999999999999
Q ss_pred cCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCCC
Q 006963 545 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 613 (623)
Q Consensus 545 FepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~~ 613 (623)
|+||++++. ..|+|+||++||++++.|||+|++.+.+ + +||+|+|+||.....
T Consensus 176 f~~~~~~~~---------~~g~GlGL~i~~~i~~~~gG~i~~~~~~------~-~G~~~~i~lP~~~~~ 228 (244)
T 3d36_A 176 GEPYFTTKG---------VKGTGLGMMVVYRIIESMNGTIRIESEI------H-KGTTVSIYLPLASSP 228 (244)
T ss_dssp TSTTCCSSG---------GGCCSCHHHHHHHHHHHTTCEEEEEEET------T-TEEEEEEEEECCC--
T ss_pred hcccccCCC---------CCCcchhHHHHHHHHHHcCCEEEEEecC------C-CcEEEEEEecCCCCC
Confidence 999998641 1289999999999999999999999875 5 499999999987533
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=4.6e-33 Score=273.19 Aligned_cols=218 Identities=14% Similarity=0.134 Sum_probs=126.1
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 006963 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (623)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~ 387 (623)
++++++.++|||||||++|.++++++.......+...++++.|..+.+++.++++++.+... .
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~--------~--------- 64 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSR--------L--------- 64 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHT--------C---------
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h---------
Confidence 57899999999999999999999998765544444456666777888999999998855321 0
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHh
Q 006963 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (623)
Q Consensus 388 ~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a 467 (623)
-........+++++.++++.++..+...+
T Consensus 65 ---------------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (222)
T 3jz3_A 65 ---------------------------------------------------DSLDNLQDVAEIPLEDLLQSSVMDIYHTA 93 (222)
T ss_dssp ---------------------------------------------------CCSTTSTTCEEEEHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------hccCCccCcccCCHHHHHHHHHHHHHHHH
Confidence 00001123578999999999999999999
Q ss_pred hhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCC
Q 006963 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547 (623)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFep 547 (623)
..+++.+.+........+.+|+..|.+||.|||+||++|++.++.|.|.+. .. . |.|.|+|+||+++.++++|+|
T Consensus 94 ~~~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~-~~--~--i~V~D~G~Gi~~~~~~~if~~ 168 (222)
T 3jz3_A 94 QQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN-AD--N--FIVRDNGPGVTPEALARIGER 168 (222)
T ss_dssp HHTTCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC-SS--E--EEEECSCC-------------
T ss_pred HHhCCeEEEeeCCcceEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc-cC--e--EEEEECCCCCCHHHHHHHHhh
Confidence 888999988876667789999999999999999999999999899998885 22 2 999999999999999999999
Q ss_pred CcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCC
Q 006963 548 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 612 (623)
Q Consensus 548 F~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~ 612 (623)
||+..... ..|+||||+|||++++.|||+|++.|.+ + +||+|+++||..++
T Consensus 169 f~~~~~~~-------~~g~GlGL~i~~~i~~~~gG~i~i~s~~------~-~Gt~v~~~~P~~~~ 219 (222)
T 3jz3_A 169 FYRPPGQT-------ATGSGLGLSIVQRIAKLHGMNVEFGNAE------Q-GGFEAKVSWLEHHH 219 (222)
T ss_dssp --------------------CTHHHHHHHHHHTTCEEECCBCT------T-SSBEEEEECCCC--
T ss_pred hccCCCCC-------CCcccccHHHHHHHHHHcCCEEEEEcCC------C-CcEEEEEeecCCCC
Confidence 99854221 2399999999999999999999999986 5 49999999998763
No 5
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=7.4e-31 Score=274.95 Aligned_cols=215 Identities=16% Similarity=0.222 Sum_probs=182.0
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 006963 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (623)
Q Consensus 307 q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i 386 (623)
..+++++.++|||||||++|.+++++|.......+...++++.|..+.+++.++++++.+... .
T Consensus 131 ~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~---~------------- 194 (349)
T 3a0r_A 131 ILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK---E------------- 194 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C-------------
Confidence 346789999999999999999999999887766666778899999999999999998855311 0
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHH
Q 006963 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (623)
Q Consensus 387 ~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~ 466 (623)
. .....+++++.+++++++..+...
T Consensus 195 ---------------------------------------------------~----~~~~~~~~~l~~~~~~~~~~~~~~ 219 (349)
T 3a0r_A 195 ---------------------------------------------------R----QVLEFTEFNLNELIREVYVLFEEK 219 (349)
T ss_dssp ---------------------------------------------------C-----CEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------c----cccCCcccCHHHHHHHHHHHHHHH
Confidence 0 001257899999999999999998
Q ss_pred hhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcC
Q 006963 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLT 546 (623)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFe 546 (623)
+..+++.+.+...+....+.+|+..|.+||.|||.||+||++.++.|.|.+. ..++.+.|.|.|+|+||+++.++++|+
T Consensus 220 ~~~~~i~~~~~~~~~~~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~-~~~~~~~i~v~D~G~Gi~~~~~~~if~ 298 (349)
T 3a0r_A 220 IRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSE-DMYTKVRVSVWNSGPPIPEELKEKIFS 298 (349)
T ss_dssp HTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEE-EETTEEEEEEEEESCCCCGGGGTTTSS
T ss_pred HHHcCcEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEE-ecCCEEEEEEEECCCCCChHHHhhcCC
Confidence 8878888888766667789999999999999999999999988899999997 567889999999999999999999999
Q ss_pred CCcccccccccccCCCCCCcchhHHHHHHHHH-HcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 547 PFGSELFSENMVEDNMTWNFVAGLTVARELLE-SYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 547 pF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive-~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|||+++. .|+||||+|||++++ .|||.|.+.+. + +||+|+|+||..+
T Consensus 299 ~f~~~~~----------~g~GlGL~i~~~~v~~~~gg~i~~~~~-------~-~Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 299 PFFTTKT----------QGTGLGLSICRKIIEDEHGGKIWTENR-------E-NGVVFIFEIPKTP 346 (349)
T ss_dssp SCCCC----------------CCCTHHHHHHHHTTCSBCCEEEC-------S-SEEEEEEEEESCT
T ss_pred CCccCCC----------CCccchHHHHHHHHHHhCCCEEEEEeC-------C-CcEEEEEEecCCC
Confidence 9998641 299999999999999 79999999986 3 4999999999865
No 6
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=1.8e-30 Score=262.94 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=150.1
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccC
Q 006963 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSA 390 (623)
Q Consensus 311 ~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i~~~~ 390 (623)
+.++++|||||||++|++++++|.+.. .++...++++.|.++.+++.++++.+.-.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~-~~~~~~~~l~~I~~~~~~~~~ll~~~r~~----------------------- 104 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPS-AQDMRDDAMNLIASSARKLADLLQFTRVA----------------------- 104 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-CGGGHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 557899999999999999999987653 34455677888888888888777543110
Q ss_pred CCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHHhhhc
Q 006963 391 YSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQ 470 (623)
Q Consensus 391 ~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~a~~~ 470 (623)
.. ......++++.++.. .+...+..+
T Consensus 105 ------------------------------------------------~~--~~~~~~~~~~~~l~~----~~~~~~~~~ 130 (247)
T 4fpp_A 105 ------------------------------------------------FG--ASASAENFDSRELEK----LAQGVFAHV 130 (247)
T ss_dssp ------------------------------------------------TT--CCSSCCCEEHHHHHH----HHHHHHTTS
T ss_pred ------------------------------------------------hc--cccccccccHHHHHH----HHHHHHHhh
Confidence 00 001234567666543 333444455
Q ss_pred CCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCC--CChhhHhhhcCCC
Q 006963 471 QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD--MHYMTQMHSLTPF 548 (623)
Q Consensus 471 ~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~G--I~~e~~~~iFepF 548 (623)
++.+.+..+.. .+ +..+.|++.||+.||++|++.||.|.|.+. ..++.+.|.|.|+|+| |+++..+++|++|
T Consensus 131 ~i~l~~~~~~~--~~---~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~-~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~ 204 (247)
T 4fpp_A 131 RPTLDWQIEPQ--AM---NKPSSRAVLNIAQIAASALPAGGVATVKGV-AADGRFSIIADAKGPRARLRPEVLAGLKGEP 204 (247)
T ss_dssp SSEEEECCCSC--EE---CHHHHHHHHHHHHHHHTTCTTCCEEEEEEE-EETTEEEEEEEEESTTCCCCHHHHHHHTTCC
T ss_pred hhhccccccch--hh---hHHHHHHHHHHHHHHHHhcCCCCeEEEEEE-EECCEEEEEEEEcCCCCCCCHHHHHHhcCCC
Confidence 66666653322 12 467899999999999999999999999998 6678899999999988 6788889999999
Q ss_pred cccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 549 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 549 ~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
++.+ ..|+||||+|||+|++.|||+|+++|.+ +|++|+|+||.
T Consensus 205 ~~~~----------~~G~GLGLai~~~iv~~hGG~i~v~s~~--------~G~~f~v~LPA 247 (247)
T 4fpp_A 205 LAEG----------LGGPWVQAAYLNALVRAAGGQIAVEIGE--------DRASIAAWVPA 247 (247)
T ss_dssp CCSS----------CHHHHHHHHHHHHHHHHTTCEEEEEEET--------TEEEEEEEEEC
T ss_pred CCCC----------CCCccHHHHHHHHHHHHcCCEEEEEEcC--------CEEEEEEEecC
Confidence 8753 2399999999999999999999999863 49999999995
No 7
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.97 E-value=2.9e-30 Score=278.79 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=168.3
Q ss_pred HHHHHhHHHhHH-----HHHHHHHHHHHHHhhhcCC---cchHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Q 006963 310 ARMSNLVEQIRG-----PLSSIQTLSKMLSLHMKRS---EISYDIVE--DIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (623)
Q Consensus 310 e~la~lsHELRt-----PLtaI~~~a~lL~~~l~~~---~~~~~~~e--~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~ 379 (623)
+++++++||||| ||+.|+++++++....... +....+++ .|.+++.|| +++++.+... .
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~---~------ 165 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFD---G------ 165 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC----------
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhc---c------
Confidence 478899999999 9999999999876542221 12223555 367778888 7777744210 0
Q ss_pred HHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCc----eeeeHHHH
Q 006963 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI----RPCNVSDV 455 (623)
Q Consensus 380 ~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~----~~v~L~el 455 (623)
.......... ++|++.++
T Consensus 166 ----------------------------------------------------------~~~~~~~~~~g~i~~~~~l~~l 187 (394)
T 2btz_A 166 ----------------------------------------------------------STNPAHPKHIGSIDPNCNVSEV 187 (394)
T ss_dssp -----------------------------------------------------------------CCBTTBEEEEEHHHH
T ss_pred ----------------------------------------------------------cccCCCCcccceecCCCCHHHH
Confidence 0000000123 78999999
Q ss_pred HHHHHHHHHHHhhh-----cCCeEEEEe---cCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCC-------eEEEEEEEe
Q 006963 456 LGDLFEAVRPLAHM-----QQRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-------KVEIVSAAA 520 (623)
Q Consensus 456 l~~ll~~~~~~a~~-----~~~~i~l~~---~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg-------~I~I~~~~~ 520 (623)
++++++.+...+.. +++.+.+.. ...+..+.+|+..|.+||.|||+||+||++.++ .|.|.+. .
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~-~ 266 (394)
T 2btz_A 188 VKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVA-L 266 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEE-E
T ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEE-e
Confidence 99999999998875 667766632 356678999999999999999999999998776 6999997 6
Q ss_pred cCCeEEEEEeeCCCCCChhhHhhhcCCCcccccc-----cccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCc
Q 006963 521 PAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFS-----ENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595 (623)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s-----~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~ 595 (623)
.++.+.|.|.|+|+||+++.++++|++||+++.. ... ...|+||||+|||.+++.|||+|++.|.+
T Consensus 267 ~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~----~~~G~GLGL~i~~~i~~~~gG~i~v~s~~----- 337 (394)
T 2btz_A 267 GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGT----PLAGFGYGLPISRLYAKYFQGDLQLFSME----- 337 (394)
T ss_dssp CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------------------CCHHHHHHHHHHHTTCEEEEEEET-----
T ss_pred CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCC----CCCCccCCHHHHHHHHHHhCCEEEEEecC-----
Confidence 6788999999999999999999999999997643 111 12499999999999999999999999976
Q ss_pred CCCCeEEEEEEecCCCC
Q 006963 596 LGSGGTRVELWLPSPAP 612 (623)
Q Consensus 596 ~g~~GT~f~I~LP~~~~ 612 (623)
+. ||+|+|+||....
T Consensus 338 -g~-Gt~f~i~lP~~~~ 352 (394)
T 2btz_A 338 -GF-GTDAVIYLKALST 352 (394)
T ss_dssp -TT-EEEEEEEEESSTT
T ss_pred -CC-ceEEEEEecCCCC
Confidence 54 9999999998753
No 8
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.97 E-value=1e-29 Score=274.52 Aligned_cols=224 Identities=15% Similarity=0.137 Sum_probs=172.8
Q ss_pred HHHHHhHHHhHH-----HHHHHHHHHHHHHhhhc---CCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Q 006963 310 ARMSNLVEQIRG-----PLSSIQTLSKMLSLHMK---RSEISYDIVE--DIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (623)
Q Consensus 310 e~la~lsHELRt-----PLtaI~~~a~lL~~~l~---~~~~~~~~~e--~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~ 379 (623)
+++++++||||| ||+.|+++++++..... ..+..+++++ .|.+.+.|| +++++.+...
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~---------- 164 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFS---------- 164 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh----------
Confidence 478889999999 99999999996654321 1223355666 578888898 7777743211
Q ss_pred HHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCc----eeeeHHHH
Q 006963 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI----RPCNVSDV 455 (623)
Q Consensus 380 ~e~l~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~----~~v~L~el 455 (623)
+ ......... ++|++.++
T Consensus 165 ---------------~-------------------------------------------~~~~~~~~~g~i~~~~~l~~l 186 (394)
T 2e0a_A 165 ---------------D-------------------------------------------SQTGNPSHIGSIDPNCDVVAV 186 (394)
T ss_dssp ---------------S-------------------------------------------SCCCCTTSBTTBEEEEEHHHH
T ss_pred ---------------c-------------------------------------------ccCCCCCccccccCCCCHHHH
Confidence 0 000000112 68999999
Q ss_pred HHHHHHHHHHHhhhc-----CCeEEEEe---cCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCC-------eEEEEEEEe
Q 006963 456 LGDLFEAVRPLAHMQ-----QRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-------KVEIVSAAA 520 (623)
Q Consensus 456 l~~ll~~~~~~a~~~-----~~~i~l~~---~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg-------~I~I~~~~~ 520 (623)
+++++..+...+..+ ++.+.+.. ...+..+.+|+..|.+||.|||+||+||++.++ .|.|.+. .
T Consensus 187 l~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~-~ 265 (394)
T 2e0a_A 187 VQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVV-L 265 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEE-E
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEE-e
Confidence 999999999998776 77766632 356678999999999999999999999998765 6999997 6
Q ss_pred cCCeEEEEEeeCCCCCChhhHhhhcCCCccccccccc--ccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCC
Q 006963 521 PAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM--VEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS 598 (623)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~--~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~ 598 (623)
.++.+.|.|.|+|+||+++.++++|++||+++..... .......|+||||+|||.+++.|||+|++.|.+ +.
T Consensus 266 ~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~------g~ 339 (394)
T 2e0a_A 266 GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS------GY 339 (394)
T ss_dssp CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET------TT
T ss_pred CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC------Cc
Confidence 6788999999999999999999999999997643000 000112499999999999999999999999975 54
Q ss_pred CeEEEEEEecCCC
Q 006963 599 GGTRVELWLPSPA 611 (623)
Q Consensus 599 ~GT~f~I~LP~~~ 611 (623)
||+|+|+||...
T Consensus 340 -Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 340 -GTDAIIYLKALS 351 (394)
T ss_dssp -EEEEEEEEESSG
T ss_pred -cEEEEEEeCCCC
Confidence 999999999875
No 9
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.97 E-value=8.2e-30 Score=274.56 Aligned_cols=227 Identities=15% Similarity=0.107 Sum_probs=179.0
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHH-HHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Q 006963 305 SWQNNARMSNLVEQIRGPLSSIQ-TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (623)
Q Consensus 305 ~~q~~e~la~lsHELRtPLtaI~-~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l 383 (623)
..+..+++++++||+||||++|. ++.+++ +.....+..+++++.|..+..+|..+++++.++
T Consensus 118 ~~~~~~~l~~i~helrtpL~~i~~g~~~l~-~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l---------------- 180 (388)
T 1gkz_A 118 EAQYCQLVRQLLDDHKDVVTLLAEGLRESR-KHIEDEKLVRYFLDKTLTSRLGIRMLATHHLAL---------------- 180 (388)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHSS-SSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 34457899999999999999999 555544 334435566789999999999999999988431
Q ss_pred hhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCC----CceeeeHHHHHHHH
Q 006963 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN----GIRPCNVSDVLGDL 459 (623)
Q Consensus 384 ~~i~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~----~~~~v~L~ell~~l 459 (623)
++.+.+ ..++|++.++++++
T Consensus 181 --------------------------------------------------------~~~~~~~~~~~~~~~~l~~li~~~ 204 (388)
T 1gkz_A 181 --------------------------------------------------------HEDKPDFVGIICTRLSPKKIIEKW 204 (388)
T ss_dssp --------------------------------------------------------TSCCTTEETTEEEEECHHHHHHHH
T ss_pred --------------------------------------------------------hccCCCccceecCCCCHHHHHHHH
Confidence 111111 25789999999999
Q ss_pred HHHHHHHhhhc---CCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCC--------eEEEEEEEecCCeEEEE
Q 006963 460 FEAVRPLAHMQ---QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG--------KVEIVSAAAPAGDALVV 528 (623)
Q Consensus 460 l~~~~~~a~~~---~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg--------~I~I~~~~~~~~~v~I~ 528 (623)
+..+...+..+ ...+.+... .+..+.+|+..|.+||.|||+||+||+..++ .|.|.+. ..++.+.|.
T Consensus 205 ~~~~~~~~~~~~g~~~~i~i~~~-~~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~-~~~~~v~i~ 282 (388)
T 1gkz_A 205 VDFARRLCEHKYGNAPRVRINGH-VAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA-NNDVDLIIR 282 (388)
T ss_dssp HHHHHHHHHHHHSCCCCEEEEES-TTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE-ECSSEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEcc-CCCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE-eCCCEEEEE
Confidence 99999998766 335555532 3456789999999999999999999998765 8999997 667889999
Q ss_pred EeeCCCCCChhhHhhhcCCCcccccccccc----------------cCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCc
Q 006963 529 IDDDGPDMHYMTQMHSLTPFGSELFSENMV----------------EDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 592 (623)
Q Consensus 529 V~D~G~GI~~e~~~~iFepF~~~~~s~~~~----------------~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~ 592 (623)
|.|+|+||+++.++++|++||+++...... ......|+||||+|||.+++.|||+|++.|.+
T Consensus 283 V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~-- 360 (388)
T 1gkz_A 283 ISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ-- 360 (388)
T ss_dssp EECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET--
T ss_pred EEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC--
Confidence 999999999999999999999986432100 00112499999999999999999999999986
Q ss_pred cCcCCCCeEEEEEEecCCCCC
Q 006963 593 DAALGSGGTRVELWLPSPAPL 613 (623)
Q Consensus 593 ~~~~g~~GT~f~I~LP~~~~~ 613 (623)
+. ||+|+|+||.....
T Consensus 361 ----g~-Gt~f~i~LP~~~~~ 376 (388)
T 1gkz_A 361 ----GI-GTDVYLRLRHIDGR 376 (388)
T ss_dssp ----TT-EEEEEEEEECSSSC
T ss_pred ----CC-cEEEEEEecCCCCC
Confidence 65 99999999997644
No 10
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.97 E-value=1.2e-29 Score=275.29 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=133.1
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhc-----CCeEEEEe---cCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCC-------
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQ-----QRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG------- 511 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~-----~~~i~l~~---~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg------- 511 (623)
.++|++.+++++++..+...+..+ ++.+.+.. +..+..+.+|+..|.+||.|||+||+||++.++
T Consensus 191 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~~ 270 (407)
T 2q8g_A 191 NPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHANRGVYP 270 (407)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTTTCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Confidence 578999999999999999998766 67766654 356678999999999999999999999998766
Q ss_pred eEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccc--cCCCCCCcchhHHHHHHHHHHcCCEEEEEeC
Q 006963 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMV--EDNMTWNFVAGLTVARELLESYGCVVRVISP 589 (623)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~--~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~ 589 (623)
.|.|.+. ..++.+.|.|.|+|+||+++.++++|++||+++...... ......|+||||+|||.+++.|||+|++.|.
T Consensus 271 ~I~I~~~-~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~ 349 (407)
T 2q8g_A 271 PIQVHVT-LGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSL 349 (407)
T ss_dssp CEEEEEE-ECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEE-eCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEc
Confidence 7999997 567889999999999999999999999999986432000 0011249999999999999999999999997
Q ss_pred CCccCcCCCCeEEEEEEecCCC
Q 006963 590 WKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 590 ~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
+ +. ||+|+|+||...
T Consensus 350 ~------g~-Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 350 E------GY-GTDAVIYIKALS 364 (407)
T ss_dssp T------TT-EEEEEEEEESSG
T ss_pred C------CC-ceEEEEEECCCC
Confidence 5 54 999999999865
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97 E-value=1.2e-29 Score=276.38 Aligned_cols=157 Identities=19% Similarity=0.178 Sum_probs=127.1
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhh-----cCCeEEEEe---cCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCC-------
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHM-----QQRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG------- 511 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~-----~~~~i~l~~---~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg------- 511 (623)
.++|++.++++++++.++..+.. +++.|.+.. +..+..+.+|+..|.+||.|||+||+||++.++
T Consensus 201 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~~~~~~ 280 (419)
T 1y8o_A 201 DPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGY 280 (419)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence 37899999999999999988865 566666642 256678999999999999999999999998754
Q ss_pred -eEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccccccccc--ccCCCCCCcchhHHHHHHHHHHcCCEEEEEe
Q 006963 512 -KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM--VEDNMTWNFVAGLTVARELLESYGCVVRVIS 588 (623)
Q Consensus 512 -~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~--~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S 588 (623)
.|.|.+. ..++.+.|.|.|+|+||+++.++++|+|||+++..... .......|+||||+|||.+++.|||+|++.|
T Consensus 281 ~~I~I~~~-~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s 359 (419)
T 1y8o_A 281 PAVKTLVT-LGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYS 359 (419)
T ss_dssp CCEEEEEE-ECSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEE-eCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEe
Confidence 7999987 56778999999999999999999999999998643000 0001124999999999999999999999999
Q ss_pred CCCccCcCCCCeEEEEEEecCCC
Q 006963 589 PWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 589 ~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
.+ +. ||+|+|+||...
T Consensus 360 ~~------g~-Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 360 ME------GV-GTDAVIYLKALS 375 (419)
T ss_dssp ET------TT-EEEEEEEEESCG
T ss_pred cC------CC-CEEEEEEecCCC
Confidence 86 54 999999999875
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.92 E-value=1.1e-24 Score=234.39 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=156.8
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 006963 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (623)
Q Consensus 307 q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~~l~l~~~~I~~~~~e~l~~i 386 (623)
.+.+++.+++||||+|++.|.++.+.+.. +.+....++|..+++++.+...
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~------------~~i~~~~~~l~~l~~~l~~~~~----------------- 59 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI------------KELDESLSHLSRITLDLQNVVM----------------- 59 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC------------HHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 35688999999999999999876654421 4567778888888888865321
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccccCCCCCceeeeHHHHHHHHHHHHHHH
Q 006963 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (623)
Q Consensus 387 ~~~~~~~~r~l~s~l~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~~ppL~La~~e~~~~~~v~L~ell~~ll~~~~~~ 466 (623)
..+.+++.+++..+...++..
T Consensus 60 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 80 (379)
T 1b3q_A 60 -----------------------------------------------------------KIRMVPISFVFNRFPRMVRDL 80 (379)
T ss_dssp -----------------------------------------------------------HHHEEETHHHHTTHHHHHHHH
T ss_pred -----------------------------------------------------------HcceecHHHHHHHHHHHHHHH
Confidence 124577888888888888888
Q ss_pred hhhcCCeEEEEecCCceEEEeCHHH---HHHHHHHHHHHHHhhc------------CCCCeEEEEEEEecCCeEEEEEee
Q 006963 467 AHMQQRQVELSELSQSLLVAVEEPA---LRQALSNLIEGALMRT------------QVGGKVEIVSAAAPAGDALVVIDD 531 (623)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~---L~qVL~NLL~NAlk~t------------~~gg~I~I~~~~~~~~~v~I~V~D 531 (623)
+...++.+++...... +..|+.. +.++|.|||.||++|+ +.+|.|.|.+. ..++.+.|.|.|
T Consensus 81 ~~~~~~~v~l~~~~~~--~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~-~~~~~v~i~V~D 157 (379)
T 1b3q_A 81 AKKMNKEVNFIMRGED--TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR-HEGNNVVIEVED 157 (379)
T ss_dssp HHHTTCCEEEEEECTT--CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE-EETTEEEEEEEE
T ss_pred HHHhCCeEEEEEcCCC--eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEE-EeCCEEEEEEEE
Confidence 8877888888754333 3467754 5555999999999997 67799999997 667889999999
Q ss_pred CCCCCChhhH------------------------hhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 006963 532 DGPDMHYMTQ------------------------MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 587 (623)
Q Consensus 532 ~G~GI~~e~~------------------------~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~ 587 (623)
+|+||+++.+ +++|+|||++..... ...|+|+||+|||++++.|||+|++.
T Consensus 158 ~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~-----~~~G~GlGL~iv~~~v~~~gG~i~v~ 232 (379)
T 1b3q_A 158 DGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVS-----EVSGRGVGMDVVKNVVESLNGSMGIE 232 (379)
T ss_dssp CSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC----------------CCCSHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccC-----CCCCccccHHHHHHHHHHCCCEEEEE
Confidence 9999999976 889999998753211 12499999999999999999999999
Q ss_pred eCCCccCcCCCCeEEEEEEecCCC
Q 006963 588 SPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 588 S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
|.+ +. ||+|+++||...
T Consensus 233 s~~------g~-Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 233 SEK------DK-GTKVTIRLPLTL 249 (379)
T ss_dssp EET------TT-EEEEEEEEESSC
T ss_pred EcC------CC-CeEEEeccCCcc
Confidence 986 65 999999999864
No 13
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.92 E-value=6e-24 Score=196.82 Aligned_cols=146 Identities=19% Similarity=0.202 Sum_probs=128.4
Q ss_pred eeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEE
Q 006963 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (623)
Q Consensus 448 ~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I 527 (623)
+++++.+++++++..+...+..+++.+.+... ....+.+|+..|.+|+.|||+||++|++. .|.|.+. ..++.+.|
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~d~~~l~~il~nLl~NAi~~~~~--~i~i~~~-~~~~~~~i 77 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDIS-PEISFVGEQNDFVEVMGNVLDNACKYCLE--FVEISAR-QTDEHLYI 77 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECC-TTCEEESCHHHHHHHHHHHHHHHHHHCSS--EEEEEEE-ECSSCEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcC-CCceEeeCHHHHHHHHHHHHHHHHHhCcC--eEEEEEE-ecCCEEEE
Confidence 57999999999999999999888888888743 34678999999999999999999999975 8888887 56678999
Q ss_pred EEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 528 VIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 528 ~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
.|.|+|+||+++..+++|++|++..... .|+||||++||++++.|||+|++.+.+ + +||+|+|+|
T Consensus 78 ~i~D~G~gi~~~~~~~~f~~~~~~~~~~--------~g~GlGL~i~~~~~~~~gG~i~~~~~~------~-~G~~~~i~l 142 (152)
T 1id0_A 78 VVEDDGPGIPLSKREVIFDRGQRVDTLR--------PGQGVGLAVAREITEQYEGKIVAGESM------L-GGARMEVIF 142 (152)
T ss_dssp EEEESSSCCCGGGTTGGGSCCCCTTCCC--------TTCCSCHHHHHHHHHHTTCEEEEEECT------T-SSEEEEEEE
T ss_pred EEEeCCCCcCHHHHHHHhccceeccCCC--------CCcccCHHHHHHHHHHcCCEEEEEeCC------C-CcEEEEEEE
Confidence 9999999999999999999999875332 399999999999999999999999875 4 499999999
Q ss_pred cCCCC
Q 006963 608 PSPAP 612 (623)
Q Consensus 608 P~~~~ 612 (623)
|....
T Consensus 143 P~~~~ 147 (152)
T 1id0_A 143 GRQHS 147 (152)
T ss_dssp CCCC-
T ss_pred ecccc
Confidence 99764
No 14
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.92 E-value=4.2e-24 Score=197.88 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=120.4
Q ss_pred CceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeE
Q 006963 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (623)
Q Consensus 446 ~~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v 525 (623)
..+++++.+++++++..+...+ +++.+.+.. +.+..+.+|+..|.+|+.|||+||+||++.+ .|.|.+. ..++.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~-~~~~~~~~d~~~l~~il~nLl~NA~~~~~~~-~I~i~~~-~~~~~~ 78 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVP-SPTCIIVGLPAGLRLAVDNAIANAVKHGGAT-LVQLSAV-SSRAGV 78 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECS-CCCCEEEECHHHHHHHHHHHHHHHHHTTCCS-EEEEEEE-EETTEE
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEcc-CCCceEecCHHHHHHHHHHHHHHHHhcCCCc-EEEEEEE-ecCCEE
Confidence 3678999999999999998766 467777763 4556899999999999999999999999875 9999987 566789
Q ss_pred EEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEE
Q 006963 526 LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 605 (623)
Q Consensus 526 ~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I 605 (623)
.|.|.|+|+||+++.++++|+||+++.... ..|+||||+|||++++.|||+|++.+.+ +. ||+|+|
T Consensus 79 ~i~v~D~G~gi~~~~~~~if~~f~~~~~~~-------~~g~GlGL~i~~~~~~~~gG~i~~~~~~------~~-G~~~~i 144 (150)
T 1ysr_A 79 EIAIDDNGSGVPEGERQVVFERFSRGSTAS-------HSGSGLGLALVAQQAQLHGGTASLENSP------LG-GARLVL 144 (150)
T ss_dssp EEEEEESSSCCCGGGHHHHHTSCC------------------CCCHHHHHHHHHTTCEEEEEECT------TS-SEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHhcccccCCCCC-------CCCCCcCHHHHHHHHHHcCCEEEEeecC------CC-CEEEEE
Confidence 999999999999999999999999864222 2399999999999999999999999875 54 999999
Q ss_pred EecCC
Q 006963 606 WLPSP 610 (623)
Q Consensus 606 ~LP~~ 610 (623)
+||..
T Consensus 145 ~lP~~ 149 (150)
T 1ysr_A 145 RLPGP 149 (150)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99974
No 15
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.92 E-value=7.2e-24 Score=195.76 Aligned_cols=146 Identities=18% Similarity=0.264 Sum_probs=131.7
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEE
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~ 526 (623)
.+++++.+++++++..+...+..+++.+.+.....+..+.+|+..|.+|+.|||+||++|++.++.|.|.+. ..++.+.
T Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~-~~~~~~~ 81 (152)
T 3a0y_A 3 FTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSE-DMYTKVR 81 (152)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE-ECSSEEE
T ss_pred cEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCCcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEE-ecCCEEE
Confidence 578999999999999999999888999988866567789999999999999999999999988899999997 5677899
Q ss_pred EEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHH-HcCCEEEEEeCCCccCcCCCCeEEEEE
Q 006963 527 VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE-SYGCVVRVISPWKTDAALGSGGTRVEL 605 (623)
Q Consensus 527 I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive-~~GG~I~v~S~~~~~~~~g~~GT~f~I 605 (623)
|.|.|+|+||+++..+++|++|++.. ..|+||||++||++++ .|||.+.+.+. + +||+|++
T Consensus 82 i~i~D~G~g~~~~~~~~~f~~~~~~~----------~~g~GlGL~i~~~~~~~~~gg~~~~~~~-------~-~g~~~~i 143 (152)
T 3a0y_A 82 VSVWNSGPPIPEELKEKIFSPFFTTK----------TQGTGLGLSICRKIIEDEHGGKIWTENR-------E-NGVVFIF 143 (152)
T ss_dssp EEEEEESCCCCGGGTTGGGSTTCCCC------------CCCCSHHHHHHHHHTTTSCEEEEEEE-------T-TEEEEEE
T ss_pred EEEEeCCCCcCHHHHHhHhhhhccCC----------CCCCCcCHHHHHHHHHHhCCcEEEEecC-------C-CCEEEEE
Confidence 99999999999999999999999853 1289999999999999 99999999886 3 4999999
Q ss_pred EecCCC
Q 006963 606 WLPSPA 611 (623)
Q Consensus 606 ~LP~~~ 611 (623)
.||...
T Consensus 144 ~lP~~~ 149 (152)
T 3a0y_A 144 EIPKTP 149 (152)
T ss_dssp EEESCC
T ss_pred EeCCCC
Confidence 999865
No 16
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.91 E-value=1.3e-23 Score=200.44 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=126.7
Q ss_pred eeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEE-ecCCeEEE
Q 006963 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA-APAGDALV 527 (623)
Q Consensus 449 ~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~-~~~~~v~I 527 (623)
+++|.++++.++..+... ..+++.+.+..+.....+.+|+..|.+||.|||+||++|++.++.|.|.+.. ..++.+.|
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i 80 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYI 80 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSCCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEE
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCCcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEE
Confidence 589999999999999988 6677888887666677899999999999999999999999888888887741 45678999
Q ss_pred EEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 528 VIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 528 ~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
.|.|+|+||+++.+.++|++|++....... ...|+||||++|+++++.|||+|++.+.+ +. ||+|+|.|
T Consensus 81 ~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~----~~~g~GlGL~iv~~~~~~~~G~i~i~~~~------~~-Gt~~~i~l 149 (177)
T 3sl2_A 81 SVKDEGIGIPKKDVEKVFDRFYRVDKARTR----KLGGTGLGLAIAKEMVQAHGGDIWADSIE------GK-GTTITFTL 149 (177)
T ss_dssp EEECCSSCCCTTTTTTTTSTTCCCC----------CCCCCCHHHHHHHHHHHTTCCEEEEEET------TT-EEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhhhccCCCCCCC----CCCCCCcCHHHHHHHHHHcCCEEEEEecC------CC-CeEEEEEE
Confidence 999999999999999999999986533221 12389999999999999999999999875 54 99999999
Q ss_pred cCCCCC
Q 006963 608 PSPAPL 613 (623)
Q Consensus 608 P~~~~~ 613 (623)
|.....
T Consensus 150 P~~~~~ 155 (177)
T 3sl2_A 150 PYKEEQ 155 (177)
T ss_dssp EEEC--
T ss_pred eCCCCc
Confidence 986543
No 17
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.90 E-value=3.8e-23 Score=193.90 Aligned_cols=148 Identities=20% Similarity=0.357 Sum_probs=126.9
Q ss_pred CceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeE
Q 006963 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (623)
Q Consensus 446 ~~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v 525 (623)
..++++|.+++++++..+.. .+..+.+........+.+|+..|.+|+.|||+||+||+ ++.|.|.+. ..++.+
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~~~v~~d~~~l~~il~nll~NAik~~--~~~I~i~~~-~~~~~~ 78 (161)
T 1bxd_A 6 PMEMADLNAVLGEVIAAESG----YEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG--NGWIKVSSG-TEPNRA 78 (161)
T ss_dssp CSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEE-EETTEE
T ss_pred cccccCHHHHHHHHHHHhhh----hcceEEEEecCCCceEEECHHHHHHHHHHHHHHHHhhc--CCeEEEEEE-EcCCEE
Confidence 36789999999999998653 45667776555667899999999999999999999999 689999987 566889
Q ss_pred EEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEE
Q 006963 526 LVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 605 (623)
Q Consensus 526 ~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I 605 (623)
.|.|.|+|+||+++.++++|++|++++.... ..|+||||+|||++++.|||+|++.+.+ + +||+|+|
T Consensus 79 ~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~------~~g~GlGL~i~~~~~~~~gG~i~~~~~~------~-~G~~~~i 145 (161)
T 1bxd_A 79 WFQVEDDGPGIAPEQRKHLFQPFVRGDSART------ISGTGLGLAIVQRIVDNHNGMLELGTSE------R-GGLSIRA 145 (161)
T ss_dssp EEEEEEESSCSCTTGGGCSSCCCCCCSCCCC------CCCCSCCCCTTHHHHHHHTSEEEEEEET------T-TEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHhCCCceeCCCCCC------CCCcccCHHHHHHHHHHcCCEEEEEECC------C-CeEEEEE
Confidence 9999999999999999999999999753321 2499999999999999999999999875 4 4999999
Q ss_pred EecCCCCC
Q 006963 606 WLPSPAPL 613 (623)
Q Consensus 606 ~LP~~~~~ 613 (623)
+||.....
T Consensus 146 ~lP~~~~~ 153 (161)
T 1bxd_A 146 WLPVPVTR 153 (161)
T ss_dssp EECCCSCC
T ss_pred EEeCCccc
Confidence 99987643
No 18
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.89 E-value=3.5e-23 Score=192.56 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=107.4
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEecCC--
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV-GGKVEIVSAAAPAG-- 523 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~-gg~I~I~~~~~~~~-- 523 (623)
.+++++.++++.++..+... ..+++.+.+........+.+|+..|.+|+.|||+||+||++. ++.|.|.+.. .++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~-~~~~~ 82 (160)
T 1r62_A 5 RVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRT-AFQLT 82 (160)
T ss_dssp CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEE-EEEEE
T ss_pred cccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCeeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEec-ccccc
Confidence 57899999999999999876 556677777655444568999999999999999999999987 7899998873 334
Q ss_pred --------eEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCc
Q 006963 524 --------DALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 595 (623)
Q Consensus 524 --------~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~ 595 (623)
.+.|.|.|+|+||+++.++++|++|+++.. .|+||||++|++++++|||+|++.+.+
T Consensus 83 ~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~----------~g~GlGL~i~~~~~~~~gG~l~i~s~~----- 147 (160)
T 1r62_A 83 LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE----------GGTGLGLSIARNLIDQHSGKIEFTSWP----- 147 (160)
T ss_dssp ETTEEEEEEEEEEEEEECTTC------------------------------CHHHHHHHHHHHHTTCEEEEEEET-----
T ss_pred ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC----------CCCccCHHHHHHHHHHCCCeEEEEeCC-----
Confidence 789999999999999999999999998631 289999999999999999999999864
Q ss_pred CCCCeEEEEEEecCC
Q 006963 596 LGSGGTRVELWLPSP 610 (623)
Q Consensus 596 ~g~~GT~f~I~LP~~ 610 (623)
+||+|+|.||..
T Consensus 148 ---~~~~~~i~lP~~ 159 (160)
T 1r62_A 148 ---GHTEFSVYLPIR 159 (160)
T ss_dssp ---TEEEEEEEEEEE
T ss_pred ---CCEEEEEEEecc
Confidence 369999999964
No 19
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.89 E-value=4.5e-22 Score=195.20 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=95.9
Q ss_pred eeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCc-eEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEE
Q 006963 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (623)
Q Consensus 449 ~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~-~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I 527 (623)
+.++.+.+..+...+. ..++.+.+...... .....+...|.+|+.||+.||+||++. +.|.|.+. ..++.+.|
T Consensus 91 ~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~-~~~~~~~i 164 (218)
T 3ehh_A 91 GIRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQ-QLWKEVVI 164 (218)
T ss_dssp CCCHHHHHHHHHHHHH----HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEE-EETTEEEE
T ss_pred CcCHHHHHHHHHHHHH----hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEE-EeCCEEEE
Confidence 4567777777666553 36777777643332 334567788999999999999999975 79999997 56788999
Q ss_pred EEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEe
Q 006963 528 VIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 607 (623)
Q Consensus 528 ~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~L 607 (623)
.|.|+|+||+++.. .|+||||++|+++++.|||+|++.+. . ||+|+|+|
T Consensus 165 ~V~D~G~Gi~~~~~----------------------~g~GlGL~~~~~~v~~~gG~i~~~s~--------~-Gt~~~i~l 213 (218)
T 3ehh_A 165 TVSDDGTFKGEENS----------------------FSKGHGLLGMRERLEFANGSLHIDTE--------N-GTKLTMAI 213 (218)
T ss_dssp EEEESSCCCC------------------------------CHHHHHHHHHHHTTCEEEEECS--------S-SEEEEEEE
T ss_pred EEEECCcCCCCCCC----------------------CCCCCCHHHHHHHHHHcCCEEEEeCC--------C-CeEEEEEE
Confidence 99999999998754 18999999999999999999999984 3 99999999
Q ss_pred cCC
Q 006963 608 PSP 610 (623)
Q Consensus 608 P~~ 610 (623)
|..
T Consensus 214 P~~ 216 (218)
T 3ehh_A 214 PNN 216 (218)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.88 E-value=4.4e-22 Score=191.83 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=123.2
Q ss_pred ceeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCceEE-EeCHHHHHHHHHHHHHHHHhhc------------CCCCeE
Q 006963 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLV-AVEEPALRQALSNLIEGALMRT------------QVGGKV 513 (623)
Q Consensus 447 ~~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~~V-~~D~~~L~qVL~NLL~NAlk~t------------~~gg~I 513 (623)
.+++++.++++.++..+...+...++.+.+........+ ..+...+.++|.|||+||++|+ +.++.|
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 468999999999999999999888888888754333322 2233456666999999999996 667899
Q ss_pred EEEEEEecCCeEEEEEeeCCCCCChhhH------------------------hhhcCCCcccccccccccCCCCCCcchh
Q 006963 514 EIVSAAAPAGDALVVIDDDGPDMHYMTQ------------------------MHSLTPFGSELFSENMVEDNMTWNFVAG 569 (623)
Q Consensus 514 ~I~~~~~~~~~v~I~V~D~G~GI~~e~~------------------------~~iFepF~~~~~s~~~~~~~~~~GtGLG 569 (623)
.|.+. ..++.+.|.|.|+|+||+++.+ +++|+|||++..... ...|+|||
T Consensus 82 ~I~~~-~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~-----~~~g~GlG 155 (189)
T 1i58_A 82 ILSAR-HEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVS-----EVSGRGVG 155 (189)
T ss_dssp EEEEE-EETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHH-----GGGTCCCH
T ss_pred EEEEE-ecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccccccCC-----CCCCCccC
Confidence 99997 5678899999999999999976 899999998653211 11389999
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 570 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 570 LaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
|+||+++++.|||+|++.+.+ +. ||+|+|+||.
T Consensus 156 L~iv~~~~~~~~G~i~i~s~~------~~-Gt~~~i~lPl 188 (189)
T 1i58_A 156 MDVVKNVVESLNGSISIESEK------DK-GTKVTIRLPL 188 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEEET------TT-EEEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeCC------CC-ceEEEEEEeC
Confidence 999999999999999999975 54 9999999997
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.78 E-value=1.8e-18 Score=156.52 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=99.4
Q ss_pred eeHHHHHHHHHHHHHHHhhhcCCeEEEEecC-CceEEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEE
Q 006963 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528 (623)
Q Consensus 450 v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~ 528 (623)
+++.+.+..+...+. .+++.+.+.... .......+...+.+++.||++||+||++. +.|.|.+. ..++.+.|.
T Consensus 2 v~l~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~-~~~~~~~i~ 75 (128)
T 3ehg_A 2 IRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQ-QLWKEVVIT 75 (128)
T ss_dssp CCHHHHHHHHHHHHH----HTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEE-EETTEEEEE
T ss_pred ccHHHHHHHHHHHHH----HcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEEE-EeCCEEEEE
Confidence 456666666655543 467787776432 22334567889999999999999999975 78999997 567889999
Q ss_pred EeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEec
Q 006963 529 IDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 608 (623)
Q Consensus 529 V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP 608 (623)
|.|+|+||+++.. .|+|+||+++|++++.|||+|++.+. . ||+|+++||
T Consensus 76 V~D~G~Gi~~~~~----------------------~g~GlGL~~~~~~~~~~gG~i~~~s~--------~-Gt~~~i~lP 124 (128)
T 3ehg_A 76 VSDDGTFKGEENS----------------------FSKGHGLLGMRERLEFANGSLHIDTE--------N-GTKLTMAIP 124 (128)
T ss_dssp EEESSCCCSCSSC----------------------CCTTSHHHHHHHHHHHTTCEEEEECS--------S-SEEEEEEEE
T ss_pred EEECCcCcCcccC----------------------CCCCccHHHHHHHHHHcCCEEEEEeC--------C-CEEEEEEEe
Confidence 9999999998643 18999999999999999999999984 3 999999999
Q ss_pred CC
Q 006963 609 SP 610 (623)
Q Consensus 609 ~~ 610 (623)
..
T Consensus 125 ~~ 126 (128)
T 3ehg_A 125 NN 126 (128)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=2.5e-18 Score=154.85 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=101.4
Q ss_pred eeeeHHHHHHHHHHHHHHHhhhcCCeEEEEecCCce-EEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEE
Q 006963 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (623)
Q Consensus 448 ~~v~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~-~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~ 526 (623)
+.++|.+++..++..+ ...++.+.+....... ....++..|.+|+.|||+||+||++. +.|.|.+. ..++ +.
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~-~~i~i~~~-~~~~-~~ 75 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAA-STLTVRVK-VDDD-LC 75 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSC-CEEEEEEE-ESSE-EE
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCC-ceEEEEEE-EcCC-EE
Confidence 4679999999999888 3356777777543333 34455889999999999999999964 89999998 4556 99
Q ss_pred EEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEE
Q 006963 527 VVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 606 (623)
Q Consensus 527 I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~ 606 (623)
|.|.|+|+||+++. +|+||++||++++.|||++.+.+.+ +.+|++|+++
T Consensus 76 i~v~D~G~gi~~~~-------------------------~GlGL~i~~~~~~~~gG~i~~~~~~------~~~G~~~~i~ 124 (129)
T 3zxo_A 76 IEVTDNGRGMPDEF-------------------------TGSGLTNLRQRAEQAGGEFTLASMP------GASGTVLRWS 124 (129)
T ss_dssp EEEEECCCCCTTTT-------------------------CSHHHHHHHHHHHHTTCEEEEEECT------TTCCEEEEEE
T ss_pred EEEecCCCCCCccc-------------------------CCcCHHHHHHHHHHcCCEEEEeeCC------CCCcEEEEEE
Confidence 99999999998743 4799999999999999999999975 4149999999
Q ss_pred ecCC
Q 006963 607 LPSP 610 (623)
Q Consensus 607 LP~~ 610 (623)
||..
T Consensus 125 lP~~ 128 (129)
T 3zxo_A 125 APLS 128 (129)
T ss_dssp EESC
T ss_pred ecCC
Confidence 9975
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=4.1e-17 Score=145.96 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=97.4
Q ss_pred eHHHHHHHHHHHHHHHhhhcCCeEEEEecCCce-EEEeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEE
Q 006963 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529 (623)
Q Consensus 451 ~L~ell~~ll~~~~~~a~~~~~~i~l~~~~~~~-~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V 529 (623)
++.+.+.+++..+ ...++.+.+....... ....+...|.+++.||++||+||++. +.|.|.+. ..++ +.|.|
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~-~~~~-~~i~v 74 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANA-TSLAINVS-VEDD-VRVEV 74 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEEEE-EEEE-EEEEE
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEE-eCCC-EEEEE
Confidence 5777888888777 2356777777433322 33345788999999999999999975 78999987 4445 99999
Q ss_pred eeCCCCCChhhHhhhcCCCcccccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecC
Q 006963 530 DDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 609 (623)
Q Consensus 530 ~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~ 609 (623)
.|+|+||+++. .|+||+++|++++.|||++++.+.+ + +||+|+++||.
T Consensus 75 ~D~G~gi~~~~-------------------------~GlGL~~~~~~~~~~gG~i~~~~~~------~-~G~~~~i~lP~ 122 (124)
T 3zxq_A 75 VDDGVGISGDI-------------------------TESGLRNLRQRADDAGGEFTVENMP------T-GGTLLRWSAPL 122 (124)
T ss_dssp EECCCSSCGGG-------------------------SHHHHHHHHHHHHHHTCEEEEEECT------T-SSEEEEEEEEC
T ss_pred EECCCCCCccc-------------------------cccCHHHHHHHHHHhCCEEEEEEcC------C-CcEEEEEEEec
Confidence 99999998753 3799999999999999999999875 4 49999999997
Q ss_pred C
Q 006963 610 P 610 (623)
Q Consensus 610 ~ 610 (623)
.
T Consensus 123 ~ 123 (124)
T 3zxq_A 123 R 123 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.68 E-value=1.6e-16 Score=146.46 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=85.2
Q ss_pred eCHHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCC
Q 006963 487 VEEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMT 563 (623)
Q Consensus 487 ~D~~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~ 563 (623)
.|...+.+++.||++||++|+.. ++.|.|.+. ..++.+.|.|.|+|+||+ .++++|++|++++.. .
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~-~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~--------~ 103 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVI-IEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE--------L 103 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEE-EETTEEEEEEEECSSCCS--CHHHHTCCC---------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEE-EeCCEEEEEEEECCCCcC--hHHHhhcccccCCCC--------C
Confidence 46789999999999999999876 689999987 566889999999999999 788999999987531 1
Q ss_pred CCcchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCCCC
Q 006963 564 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 613 (623)
Q Consensus 564 ~GtGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~~~ 613 (623)
.|.|+||++|+++++ .+.+.+.+ + +||+|+++||..++.
T Consensus 104 ~~~GlGL~iv~~~~~----~i~~~~~~------~-~Gt~v~~~lp~~~~~ 142 (145)
T 1th8_A 104 ERSGMGFTIMENFMD----EVIVESEV------N-KGTTVYLKKHGIHHH 142 (145)
T ss_dssp CCCSCHHHHHHHHSS----EEEEEEET------T-TEEEEEEEECCC---
T ss_pred CCCcchHHHHHHHHh----eEEEEeCC------C-CCEEEEEEEeccccc
Confidence 389999999999998 89998865 5 499999999997644
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.59 E-value=3.8e-15 Score=163.82 Aligned_cols=117 Identities=15% Similarity=0.015 Sum_probs=93.9
Q ss_pred EEEeCHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEec--CCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccc
Q 006963 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAP--AGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMV 558 (623)
Q Consensus 484 ~V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~--~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~ 558 (623)
.+..|+..|.+|+.|||+||++|+..++ .|.|.+.... ++.+.|+|.|||+||++++++++|++|+++.....
T Consensus 25 ~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~-- 102 (471)
T 1mu5_A 25 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVN-- 102 (471)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCC--
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccccc--
Confidence 3556789999999999999999998877 8999987433 36799999999999999999999999987643211
Q ss_pred cCCCCCCcchhHHHHHHHHHHcCCE-EEEEeCCCccCcCCCCeE-EEEEEecCC
Q 006963 559 EDNMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGSGGT-RVELWLPSP 610 (623)
Q Consensus 559 ~~~~~~GtGLGLaIvr~ive~~GG~-I~v~S~~~~~~~~g~~GT-~f~I~LP~~ 610 (623)
.....|+||||++|+.+++.|||. |++.|.. +. |+ +|++.||..
T Consensus 103 -~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~------~~-g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 103 -RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSP------VN-SKRIYTFKLKID 148 (471)
T ss_dssp -SCCSCSCTTTHHHHHHHHHHHCCCCEEEEEEC------TT-CSEEEEEEEEEC
T ss_pred -ccCCCCceeeHHHHHHHHHHhCCCceeEEEec------CC-CceEEEEEEecc
Confidence 112348999999999999999999 9999975 44 44 666666643
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.57 E-value=5.6e-15 Score=164.38 Aligned_cols=117 Identities=16% Similarity=0.026 Sum_probs=93.5
Q ss_pred eEEEeC-HHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEec--CCeEEEEEeeCCCCCChhhHhhhcCCCcccccccc
Q 006963 483 LLVAVE-EPALRQALSNLIEGALMRTQVGG---KVEIVSAAAP--AGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSEN 556 (623)
Q Consensus 483 ~~V~~D-~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~--~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~ 556 (623)
..+..+ +..|.+|+.|||+||++|+..++ .|.|.+.... ++.+.|+|.|||+||++++++++|++|+++.....
T Consensus 22 l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~ 101 (530)
T 2zbk_B 22 LAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVN 101 (530)
T ss_dssp GGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCC
T ss_pred ceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCccc
Confidence 334445 48999999999999999999888 8999887333 36799999999999999999999999977643211
Q ss_pred cccCCCCCCcchhHHHHHHHHHHcCCE-EEEEeCCCccCcCCCCeE-EEEEEecC
Q 006963 557 MVEDNMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGSGGT-RVELWLPS 609 (623)
Q Consensus 557 ~~~~~~~~GtGLGLaIvr~ive~~GG~-I~v~S~~~~~~~~g~~GT-~f~I~LP~ 609 (623)
.....|+||||++|+.+++.|||. |++.|.. +. |+ +|++.||.
T Consensus 102 ---~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~------~~-g~~~~~~~Lpl 146 (530)
T 2zbk_B 102 ---RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSP------VN-SKRIYTFKLKI 146 (530)
T ss_dssp ---SCCSCSSSSHHHHHHHHHHHHCCCCEEEEEEC------TT-CSEEEEEEEEE
T ss_pred ---ccCCCCccchHHHHHHHHHHhCCCceEEEEec------CC-CeEEEEEEEEe
Confidence 112349999999999999999999 9999975 44 44 66666664
No 27
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.41 E-value=9.8e-14 Score=156.58 Aligned_cols=119 Identities=12% Similarity=0.079 Sum_probs=93.1
Q ss_pred EEEeCHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccC
Q 006963 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVED 560 (623)
Q Consensus 484 ~V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~ 560 (623)
.+.+|+..|.+++.|||+||++|+..++ .|.|.+.....+.+.|+|.|||+||+.++++++|++|+++..-.. .+
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~--~~ 107 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHA--LK 107 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCC--CC
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCcccc--cc
Confidence 4678999999999999999999998666 899988733226789999999999999999999998866532111 11
Q ss_pred CCCCCcchhHHHHHHHHHHcCCE-EEEEeCCCccCcCCC--CeEEEEEEecCC
Q 006963 561 NMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGS--GGTRVELWLPSP 610 (623)
Q Consensus 561 ~~~~GtGLGLaIvr~ive~~GG~-I~v~S~~~~~~~~g~--~GT~f~I~LP~~ 610 (623)
....|+|+||++|+.+++.|||. |++.+.. +. .|++|++.||..
T Consensus 108 ~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~------~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 108 QSRGQQGIGISAAVLYAQMTAGRHTKILSKT------SPTAPAHYYELMINTS 154 (621)
T ss_dssp -CCSSSSHHHHHHHHHHHHHTCCCCEEEEEC------SSSSCEEEEECCCCSS
T ss_pred ccCCCceechhhhhHHHHHhCCCceeEEeec------cCCccceEEEEecchh
Confidence 12348999999999999999999 8888865 32 367777666664
No 28
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.62 E-value=6.5e-08 Score=103.08 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCC---CCCCc-
Q 006963 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDN---MTWNF- 566 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~---~~~Gt- 566 (623)
.+.+++.|||+||+++.. +.|.|.+. .++...|.|.|||+||+.+++.++|++|++++.... .+. .+.|.
T Consensus 34 ~~~~vl~eLv~NAiDA~a--~~I~I~i~--~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~--~dl~~i~s~G~r 107 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA--TNIDLKLK--DYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEF--ADLTQVETFGFR 107 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC--SEEEEEEE--GGGTSEEEEEECSCCCCGGGSGGGGC------------CCTTCSEEESSS
T ss_pred hHHHHHHHHHHHHHHCCC--CEEEEEEE--eCCcEEEEEEECCCCcCHHHHHHHhhhccccccccc--cchhcccccCCC
Confidence 468999999999999863 57888885 234578999999999999999999999998753221 111 11355
Q ss_pred chhHHHHHHHH
Q 006963 567 VAGLTVARELL 577 (623)
Q Consensus 567 GLGLaIvr~iv 577 (623)
|+||+.+..+.
T Consensus 108 G~gl~si~~vs 118 (365)
T 1h7s_A 108 GEALSSLCALS 118 (365)
T ss_dssp SSHHHHHHHHS
T ss_pred Cchhhhhhhhc
Confidence 99999876653
No 29
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.46 E-value=1.3e-07 Score=101.47 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=65.6
Q ss_pred EeCHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhh--------hcCCCccccccccc
Q 006963 486 AVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH--------SLTPFGSELFSENM 557 (623)
Q Consensus 486 ~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~--------iFepF~~~~~s~~~ 557 (623)
.++...+.+++.|+|+||+++ .++.|.|.+. .++ .|+|.|||+|||.++.++ +|.+|+++..-...
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~--~~~~I~V~i~--~~~--~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~ 104 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG--YATEILVRLN--EDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQG 104 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SCCEEEEEEC--TTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGS
T ss_pred chHHHHHHHHHHHHHHHhhhC--CCCEEEEEEE--cCC--EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCc
Confidence 467889999999999999985 4578999885 222 799999999999998877 89988875321110
Q ss_pred ccCCCCCCcchhHHHHHHHHHH
Q 006963 558 VEDNMTWNFVAGLTVARELLES 579 (623)
Q Consensus 558 ~~~~~~~GtGLGLaIvr~ive~ 579 (623)
.+....++.|+||++|+.+.+.
T Consensus 105 ~~~~s~G~~G~Gls~v~als~~ 126 (390)
T 1kij_A 105 AYKVSGGLHGVGASVVNALSEW 126 (390)
T ss_dssp SCCCCSCSSTTSHHHHHHTEEE
T ss_pred cccccCCCCCcceeeecccccc
Confidence 1111123699999999999863
No 30
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.43 E-value=6.3e-07 Score=94.33 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccc-cccC-CCCCCcch
Q 006963 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSEN-MVED-NMTWNFVA 568 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~-~~~~-~~~~GtGL 568 (623)
.+.+++.|||+||++|.. ..|.|.+. .++...|+|.|||+||+++++..+|++|++++.... ..+. ...++.|+
T Consensus 24 ~~~~~v~ELi~NaidA~a--~~I~I~i~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~ 99 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA--TRIDIDIE--RGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGE 99 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC--SEEEEEEE--GGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSC
T ss_pred CHHHHHHHHHHHHHHCCC--CeEEEEEE--eCCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCcccc
Confidence 578999999999999974 68888885 334478999999999999999999999988642210 0000 11235899
Q ss_pred hHHHHHHH
Q 006963 569 GLTVAREL 576 (623)
Q Consensus 569 GLaIvr~i 576 (623)
||+.+..+
T Consensus 100 gl~si~~v 107 (333)
T 1b63_A 100 ALASISSV 107 (333)
T ss_dssp HHHHHHTT
T ss_pred chhhhhcC
Confidence 99987654
No 31
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.38 E-value=9.9e-07 Score=93.07 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccccccccc-ccCCCC-CCcch
Q 006963 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM-VEDNMT-WNFVA 568 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~-~~~~~~-~GtGL 568 (623)
.+.+++.|||+||+++. .+.|.|.+. .++...|.|.|||+||++++++.+|++|++++..... .+.-.+ +-.|.
T Consensus 28 ~~~~vv~eLv~NAidA~--a~~I~I~i~--~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGe 103 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK--STSIQVIVK--EGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGE 103 (348)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEE--GGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTC
T ss_pred CHHHHHHHHHHHHHHcC--CCEEEEEEE--eCCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCCh
Confidence 46799999999999995 368888885 3455689999999999999999999999998643210 000011 23578
Q ss_pred hHHHHHHH
Q 006963 569 GLTVAREL 576 (623)
Q Consensus 569 GLaIvr~i 576 (623)
||+-+..+
T Consensus 104 aL~Si~av 111 (348)
T 3na3_A 104 ALASISHV 111 (348)
T ss_dssp HHHHHHHS
T ss_pred HHHHhhcc
Confidence 88766654
No 32
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.37 E-value=7.1e-07 Score=96.15 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhcC---CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCC
Q 006963 489 EPALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~---~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~G 565 (623)
...+..++.+|+.||++|+. .+|.|.|.+....++.+.|.|+|+|+|+++. . .. .+
T Consensus 295 ~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~----------~---~~--------~~ 353 (399)
T 3ke6_A 295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR----------D---GA--------RG 353 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC----------C---CC--------CC
Confidence 45799999999999999973 3578999987443568999999999999875 1 00 16
Q ss_pred cchhHHHHHHHHHHcCCEEEEEeCCCccCcCCCCeEEEEEEecCCC
Q 006963 566 FVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 611 (623)
Q Consensus 566 tGLGLaIvr~ive~~GG~I~v~S~~~~~~~~g~~GT~f~I~LP~~~ 611 (623)
.|+||.|++.+++.++ +.+. + +|++|++.+|...
T Consensus 354 ~G~GL~lv~~l~~~~~----~~~~-------~-~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 354 RGRGLAMAEALVSEAR----IMHG-------A-GGTTATLTHRLSR 387 (399)
T ss_dssp ---CHHHHHTTSSEEE----EEEE-------T-TEEEEEEEEECEE
T ss_pred CCcHHHHHHHHHHhee----eEEC-------C-CcEEEEEEEEcCC
Confidence 7999999999987554 4442 3 5999999998754
No 33
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.19 E-value=3.4e-06 Score=89.68 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccccccccc-ccCCCCCC-cch
Q 006963 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENM-VEDNMTWN-FVA 568 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~-~~~~~~~G-tGL 568 (623)
.+.+++.|||+||+++. ...|.|.+. .++...|+|.|||+||+++++..+|++|++++..... .+.-.+.| .|.
T Consensus 25 ~~~~vv~eLv~NaiDA~--a~~I~I~i~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGe 100 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN--ANQIEIIFK--DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGE 100 (367)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEE--TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTH
T ss_pred CHHHHHHHHHHHHHHCC--CCEEEEEEE--eCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccch
Confidence 46799999999999985 358888874 4566789999999999999999999999987533210 00001123 378
Q ss_pred hHHHHHHH
Q 006963 569 GLTVAREL 576 (623)
Q Consensus 569 GLaIvr~i 576 (623)
||+-+..+
T Consensus 101 aL~Si~av 108 (367)
T 3h4l_A 101 ALSSLCGI 108 (367)
T ss_dssp HHHHHHHS
T ss_pred HHHHhhcc
Confidence 88766554
No 34
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.08 E-value=2.8e-05 Score=75.37 Aligned_cols=76 Identities=8% Similarity=-0.017 Sum_probs=43.6
Q ss_pred cCCeEEEEecCCceEEEeCHHHHHHHHHHHHHHHHhhc------CCCCeEEEEEEEec--CCeEEEEEeeCCCCCChhhH
Q 006963 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT------QVGGKVEIVSAAAP--AGDALVVIDDDGPDMHYMTQ 541 (623)
Q Consensus 470 ~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t------~~gg~I~I~~~~~~--~~~v~I~V~D~G~GI~~e~~ 541 (623)
+++.+.+...+....+...+..+ .||++||+... ...+.|.|.+. .. ++.+.|.|.|+|++|+.+.+
T Consensus 88 ~e~~i~lev~~~~s~l~~~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~-~~~~~~~l~i~V~d~G~~i~~e~~ 162 (192)
T 1ixm_A 88 HYMTLEYEVLGEIKDLSAYDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQ-TDHPDRQLILYLDFHGAFADPSAF 162 (192)
T ss_dssp CSSEEEEEEESSCCCCTTTHHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEE-CCCSSSSCEEEEEEESCBSCGGGC
T ss_pred ccCCeEEEEecCccccCCCcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEE-EecCCCEEEEEEEeCCCCCCHHHH
Confidence 56677663212111122233333 56665555542 23578999987 44 56899999999999999999
Q ss_pred hhhcCCCcc
Q 006963 542 MHSLTPFGS 550 (623)
Q Consensus 542 ~~iFepF~~ 550 (623)
.++|+..++
T Consensus 163 ~~if~~~~~ 171 (192)
T 1ixm_A 163 DDIRQNGYE 171 (192)
T ss_dssp C--------
T ss_pred HHHHhCCCC
Confidence 999987665
No 35
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=97.95 E-value=5.2e-05 Score=64.85 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366 (623)
Q Consensus 294 l~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~~ 366 (623)
+.+....+++...+..+++++++|||||||++|.++++++.. ...+..+.|..+.++|..+++++.+
T Consensus 46 ~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~------~~~~~~~~i~~~~~~l~~~i~~ll~ 112 (114)
T 3zcc_A 46 IERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE------QDGYLAESINKDIEECNAIIEQFID 112 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG------GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445556666667889999999999999999999998743 2355668899999999999999854
No 36
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.84 E-value=7.9e-06 Score=80.89 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcc
Q 006963 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550 (623)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~ 550 (623)
.+|.+||+||+++.. .++.|.|.+.. +.+...|.|.|||.||+.+++...|..+.+
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~-~~~~~~i~I~DnG~GMs~edl~~~l~~ia~ 98 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP-KPEQKVLEIRDSGIGMTKAELINNLGTIAK 98 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE-EGGGTEEEEEECSCCCCHHHHHHHTTTSCC
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE-CCCCCEEEEEEcCCCCCHHHHHHHHHhHhc
Confidence 588999999999854 13444555542 234567999999999999998877766544
No 37
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.52 E-value=4.5e-05 Score=76.22 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcC--------------CC--CeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcc
Q 006963 494 QALSNLIEGALMRTQ--------------VG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550 (623)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~ 550 (623)
.++.+||+||+++.. .. ..|.|.+. . +...|.|.|||.||+.+++...|..+.+
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~--~-~~~~i~I~DnG~GMs~edl~~~~~~ia~ 119 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD--K-DKRTLTISDNGVGMTRDEVIDHLGTIAK 119 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEE--T-TTTEEEEEECSSCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEc--C-CceEEEEEECCCCCCHHHHHHHHHHHcc
Confidence 578999999999862 12 34555543 3 2346999999999999999887766654
No 38
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.47 E-value=3.4e-05 Score=78.55 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCC
Q 006963 495 ALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547 (623)
Q Consensus 495 VL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFep 547 (623)
+|.+||+||+.+.. .++.+.|.+.. ..+...|.|.|||+||+.+++...|..
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~-d~~~~~l~I~DnGiGMt~edl~~~l~t 97 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC-DKEKNLLHVTDTGVGMTREELVKNLGT 97 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE-ETTTTEEEEEECSCCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE-cCCceEEEEEECCCCCCHHHHHHHhhh
Confidence 78889999998742 22334444442 234467999999999999987655543
No 39
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.47 E-value=0.00012 Score=74.46 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccccccc----
Q 006963 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE---- 555 (623)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~---- 555 (623)
.+|.+||+||+.+.. .+..|.|.+.. +.+.-.|.|.|||.||+.+++...|..+.+.....
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~-d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~ 149 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP-NKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEA 149 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE-ETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE-CCCeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhh
Confidence 478889999998753 12445555542 23345799999999999999876665544321100
Q ss_pred --ccccCCCCCCcchhHHHHHHHH
Q 006963 556 --NMVEDNMTWNFVAGLTVARELL 577 (623)
Q Consensus 556 --~~~~~~~~~GtGLGLaIvr~iv 577 (623)
........+..|+|++-+..++
T Consensus 150 l~~~~d~~~iG~fGiGf~S~f~va 173 (264)
T 1yc1_A 150 LQAGADISMIGQFGVGFYSAYLVA 173 (264)
T ss_dssp HHTTCCGGGGGGGTCGGGGHHHHE
T ss_pred hccccchhhcCCCCCCccccccCC
Confidence 0000011235789998776654
No 40
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.30 E-value=0.0023 Score=60.38 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=83.1
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeee---eccccc-------c
Q 006963 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN-------M 178 (623)
Q Consensus 109 ~~~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~g~~~-------~ 178 (623)
.++..+.|+.+..+..+.++...++.+ +++||+.. ..++++.+.+....|.. ..+.. ++|++. +
T Consensus 24 ~ll~~~~dl~~~L~~v~~~l~~~l~~~-~~~iyL~d---~~~~~L~l~a~~G~~~~--~~i~~geGi~G~v~~~g~~~~v 97 (167)
T 3mmh_A 24 SVVADETDWVANLANTAAVLKEAFGWF-WVGFYLVD---TRSDELVLAPFQGPLAC--TRIPFGRGVCGQAWAKGGTVVV 97 (167)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHCCS-EEEEEEEE---TTTTEEEEEEEESSCCC--SEEETTSHHHHHHHHHTSCEEE
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCc-EEEEEEEE---CCCCEEEEEEecccccc--eEeccCCChHHHHHhCCcEEEE
Confidence 456777899999999999999999655 67799986 22344554443333321 11111 344443 3
Q ss_pred CcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccc
Q 006963 179 PAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESH 258 (623)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~ 258 (623)
+.....|.. ... .....+.+++||+.+++++|+|.+.. . ++.
T Consensus 98 ~Dv~~~p~~--~~~---~~~~~S~i~vPi~~~g~viGVL~i~s-----------~-----------~~~----------- 139 (167)
T 3mmh_A 98 GDVDAHPDH--IAC---SSLSRSEIVVPLFSDGRCIGVLDADS-----------E-----------HLA----------- 139 (167)
T ss_dssp SCGGGSTTC--CCS---STTCCEEEEEEEEETTEEEEEEEEEE-----------S-----------STT-----------
T ss_pred CCcccCcch--hhc---CccCCeEEEEEeccCCEEEEEEEEec-----------C-----------CCC-----------
Confidence 333333321 111 12345789999999999999999982 1 110
Q ss_pred hhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 006963 259 AIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296 (623)
Q Consensus 259 ~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q 296 (623)
.|++++...++.++..++.+..++.
T Consensus 140 -------------~F~~~d~~~L~~lA~~la~~i~~~~ 164 (167)
T 3mmh_A 140 -------------QFDETDALYLGELAKILEKRFEASR 164 (167)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 2778888899999999887665544
No 41
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.25 E-value=0.00058 Score=73.14 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhh--------HhhhcCCCcccccccccccC
Q 006963 489 EPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT--------QMHSLTPFGSELFSENMVED 560 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~--------~~~iFepF~~~~~s~~~~~~ 560 (623)
...+.+++.|.|+||+ ......|.|.+. .++ .|+|+|||.|||.++ .+.+|..++.+..-....+.
T Consensus 33 ~~lv~ElvdNsiD~a~--~g~a~~I~V~i~--~~g--~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~ 106 (390)
T 1s16_A 33 NHLGQEVIDNSVDEAL--AGHAKRVDVILH--ADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQ 106 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCSEEEEEEC--TTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCS
T ss_pred HHHHHHHHHHHHHHHh--cCCCCEEEEEEe--cCC--EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCccc
Confidence 5677788888888887 333578999885 333 699999999999987 67788887664211110111
Q ss_pred CCCCC-cchhHHHHHHHHH
Q 006963 561 NMTWN-FVAGLTVARELLE 578 (623)
Q Consensus 561 ~~~~G-tGLGLaIvr~ive 578 (623)
.+.| .|.||+.+..+.+
T Consensus 107 -~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 107 -FSGGLHGVGISVVNALSK 124 (390)
T ss_dssp -SCSCCSSCHHHHHHHTEE
T ss_pred -ccCCccccchHHHHHhhc
Confidence 1224 8999999998874
No 42
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=97.09 E-value=0.0032 Score=58.95 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCc---Ceee-----ec------cccccCcc
Q 006963 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNAT---DIVV-----LV------GNFNMPAG 181 (623)
Q Consensus 116 df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~---~~~~-----l~------g~~~~~~~ 181 (623)
++.++.+..++.+.+.++.+ ++++|+.+. + +|...+.||..... ...+ ++ |+..+...
T Consensus 5 sldevL~~v~~~l~~~~~~d-~~~l~L~~~-----~--~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~ 76 (165)
T 3o5y_A 5 SLDDIINNMIDKLKLLVHFD-RISFLLLAN-----E--TLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSL 76 (165)
T ss_dssp CHHHHHHHHHHHHHHHSCCS-EEEEEEEET-----T--EEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEES
T ss_pred CHHHHHHHHHHHHHHhcCcc-eEEEEEEEC-----C--EEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcC
Confidence 46677788888899999777 777999972 2 35556667764320 0111 11 11111100
Q ss_pred hhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhc
Q 006963 182 LRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIE 261 (623)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~ 261 (623)
...+..............+..+++||+.++.++|+|.+.. . .+ .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~-----------~-----------~~-~------------- 120 (165)
T 3o5y_A 77 TDTQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGR-----------K-----------QQ-I------------- 120 (165)
T ss_dssp CCTTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEE-----------S-----------SC-C-------------
T ss_pred cccccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEe-----------C-----------CC-C-------------
Confidence 0000000000001123346789999999999999999982 1 10 0
Q ss_pred cchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 006963 262 SFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (623)
Q Consensus 262 ~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l 294 (623)
.|++++...++.++.++++|..-
T Consensus 121 ----------~f~~~d~~~l~~la~~~aiai~n 143 (165)
T 3o5y_A 121 ----------DWSLDDLAFLEQLTDHLAVSIEN 143 (165)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 27888899999999999998743
No 43
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.09 E-value=0.0025 Score=53.99 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 006963 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365 (623)
Q Consensus 295 ~q~~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~a~lL~~~l~~~~~~~~~~e~I~~e~~rL~~ll~~L~ 365 (623)
......+++...+..+++..++||||||++.|.++++.+... ..+..+.+...++++.++++++.
T Consensus 47 n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~l~ 111 (115)
T 3zrx_A 47 ERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFI 111 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556678899999999999999999999877432 25677788888888888888874
No 44
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=97.04 E-value=0.0069 Score=54.77 Aligned_cols=130 Identities=11% Similarity=0.102 Sum_probs=79.4
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC--cCeee-----ecccc------c-
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-----LVGNF------N- 177 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-----l~g~~------~- 177 (623)
..+.|+.++++..++.+.+.++.+ .+++|+.... . -.|..++.+..... ..... +.|.+ .
T Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~d~~---~--~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (171)
T 3trc_A 18 NAAPNLEQALKLVVVRLCEALPAD-ACSLFICDDV---H--GEYVLMATQGLNSKQVGKLRLKFGEGLIGLVGEREEPIN 91 (171)
T ss_dssp HHCSSHHHHHHHHHHHHHHHTTCS-EEEEEEEETT---T--TEEEEEEEESSCGGGTTTCEEETTCHHHHHHHHHTSCEE
T ss_pred hcccCHHHHHHHHHHHHHHHhCCc-EEEEEEEECC---C--CeEEEEEecCCCccccccEeecCCCChhhHHHhcCCeEE
Confidence 456789999999999999999555 4558988721 2 25666666654322 11111 11111 1
Q ss_pred cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcccc
Q 006963 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTES 257 (623)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~ 257 (623)
++.....+.. ..............+++||+.++.++|+|.+.. . ++.
T Consensus 92 ~~d~~~~~~~-~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~-----------~-----------~~~---------- 138 (171)
T 3trc_A 92 LADAPLHPAY-KHRPELGEEDYHGFLGIPIIEQGELLGILVIQQ-----------L-----------ESH---------- 138 (171)
T ss_dssp ESCGGGSTTC-CCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEE-----------S-----------SSC----------
T ss_pred eCCCCCCCcc-cccccCCcccccEEEEEeEEECCEEEEEEEEee-----------c-----------CCC----------
Confidence 1111111111 111112234556799999999999999999982 1 110
Q ss_pred chhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 006963 258 HAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (623)
Q Consensus 258 ~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l 294 (623)
.|++++...+..++.++++|..-
T Consensus 139 --------------~f~~~d~~~l~~la~~~a~ai~~ 161 (171)
T 3trc_A 139 --------------HFAEEEEAFCVTLAIHLAAEIAH 161 (171)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 16778888999999999987643
No 45
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=97.00 E-value=0.0026 Score=58.63 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=74.4
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC---------cCeee-----eccccc
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA---------TDIVV-----LVGNFN 177 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~---------~~~~~-----l~g~~~ 177 (623)
..+.|+.++.+..++.+.+.++.+ ++++|+.... . ..+...+.+..... ..+.. +.|.+.
T Consensus 24 ~~~~dld~ll~~i~~~~~~~l~ad-~~~i~l~d~~---~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (189)
T 2zmf_A 24 DNIVAIDSLLEHIMIYAKNLVNAD-RCALFQVDHK---N--KELYSDLFDIGEEKEGKPVFKKTKEIRFSIEKGIAGQVA 97 (189)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHTEE-EEEEEEEETT---T--TEEEEEEECCSCEETTEECCEECCCCEEETTSHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHHHhCCC-EEEEEEEecC---C--cEEEEEEEecccccccccccccccccccCCCccHHHHHH
Confidence 445689999999999999999555 5559998722 2 24443333222110 00011 111111
Q ss_pred -------cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCC
Q 006963 178 -------MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFP 250 (623)
Q Consensus 178 -------~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 250 (623)
++....++.................+++||+.++.++|+|.+.. +. .+.
T Consensus 98 ~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~----------~~-----------~~~--- 153 (189)
T 2zmf_A 98 RTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVN----------KI-----------SGS--- 153 (189)
T ss_dssp HHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEE----------ET-----------TSS---
T ss_pred HhCCeEEEecccccccccccchhhcccccceEEEeeecccCceeeEEEEEE----------cC-----------CCC---
Confidence 22222211110000111123345789999999999999998762 01 010
Q ss_pred CCCccccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 006963 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (623)
Q Consensus 251 ~~~~~e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~ 293 (623)
.|++++...++.+|.++++|..
T Consensus 154 ---------------------~f~~~d~~ll~~lA~q~a~Ai~ 175 (189)
T 2zmf_A 154 ---------------------AFSKTDENNFKMFAVFCALALH 175 (189)
T ss_dssp ---------------------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CcCHHHHHHHHHHHHHHHHHHH
Confidence 1677888899999999999874
No 46
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=96.97 E-value=0.0094 Score=55.82 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=62.8
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhc-CCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeee---eccccc-------
Q 006963 109 NLVLPSPDFQRLCVEQLHLFRRIVD-PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN------- 177 (623)
Q Consensus 109 ~~~~~s~df~~l~~~ql~~~~~~~~-~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~g~~~------- 177 (623)
.++....|+...-...+.++...++ .+ ++|||+.+. +++.|.+....|. ...+.. ++|++.
T Consensus 24 ~ll~~~~dl~~~L~~v~~ll~~~l~~~~-~~gfYL~~~-----~~L~l~~~~G~~a--~~ri~~GeGv~G~aa~~~~~i~ 95 (160)
T 3ksh_A 24 SLIEDEHHMIAILSNMSALLNDNLDQIN-WVGFYLLEQ-----NELILGPFQGHPA--CVHIPIGKGVCGTAVSERRTQV 95 (160)
T ss_dssp HTTTTCCCHHHHHHHHHHHHHHHCSSCS-EEEEEEEET-----TEEEEEEEEESCC--CSEEETTSHHHHHHHHHTSCEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcccCC-EEEEEEEEC-----CEEEEEeccCCcc--cEEeeCCCCHHHHHHhhCCEEE
Confidence 5667778899988899999999985 55 788999972 3355555444332 111111 344443
Q ss_pred cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 006963 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
++.....|.... . .....+.+++||+.+++++|+|.+.
T Consensus 96 V~Dv~~~p~~i~--~---~~~~~Sei~VPI~~~g~viGVL~i~ 133 (160)
T 3ksh_A 96 VADVHQFKGHIA--C---DANSKSEIVVPIFKDDKIIGVLDID 133 (160)
T ss_dssp ESCGGGSTTCCG--G---GTTCSEEEEEEEEETTEEEEEEEEE
T ss_pred ECCcccCccccc--c---CcccCceEEEEEEECCEEEEEEEEe
Confidence 333333332211 1 1234578999999999999999998
No 47
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.95 E-value=0.00057 Score=67.89 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccccccc----
Q 006963 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE---- 555 (623)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~---- 555 (623)
-+|..||+||+.+.. .++.+.|.+. .+.+.-.|.|.|||.||+.+++...|....+.....
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~-~d~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~ 113 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLI-PNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEA 113 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEE-EETTTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEE-EeCCeeEEEEEeCCCCCCHHHHHHHHHhhccccchhhhhh
Confidence 456778888876531 1234555554 223456799999999999998876665544321000
Q ss_pred --ccccCCCCCCcchhHHHHHHHH
Q 006963 556 --NMVEDNMTWNFVAGLTVARELL 577 (623)
Q Consensus 556 --~~~~~~~~~GtGLGLaIvr~iv 577 (623)
........+..|+||+-+-.+.
T Consensus 114 l~~~~~~~~iG~fG~G~~S~~~va 137 (228)
T 3t0h_A 114 LQAGADISMIGQFGVGFYSAYLVA 137 (228)
T ss_dssp HHTTCCGGGGGGGTCGGGGGGGTE
T ss_pred hcccCCcccCCCCChhHHHHhccC
Confidence 0000111235788888665443
No 48
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=96.91 E-value=0.024 Score=50.97 Aligned_cols=132 Identities=8% Similarity=0.053 Sum_probs=79.5
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC--cCeeeec-------ccc-----
Q 006963 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLV-------GNF----- 176 (623)
Q Consensus 111 ~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~l~-------g~~----- 176 (623)
+..+.|+.++++..++.+.+.++.+ ++.+|+...+ . -.|..++.+..... ..+.... |.+
T Consensus 11 l~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~d~~---~--~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (169)
T 3oov_A 11 IQKSIDVDEVLRLCAEGLHDVLGYE-RVNILMADTA---R--TSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQ 84 (169)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTTCCS-EEEEEEECTT---S--SEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTC
T ss_pred HhhhcCHHHHHHHHHHHHHHhhCCc-eEEEEEEeCC---C--CeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCC
Confidence 3456789999999999999999555 5559998622 2 35677777664321 1111111 111
Q ss_pred -c-cCcchhhhhhhhh---cccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCC
Q 006963 177 -N-MPAGLRAAEAALS---SQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPP 251 (623)
Q Consensus 177 -~-~~~~~~~~~~~l~---~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 251 (623)
. ++.....+..... ............+++||..+++++|+|++.. . .+..
T Consensus 85 ~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~-----------~-----------~~~~--- 139 (169)
T 3oov_A 85 VYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDN-----------R-----------SSRR--- 139 (169)
T ss_dssp CEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEEC-----------T-----------TSSS---
T ss_pred CEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEc-----------c-----------ccCC---
Confidence 0 1111111110000 0112234456799999999999999999982 1 0101
Q ss_pred CCccccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 006963 252 SFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (623)
Q Consensus 252 ~~~~e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~ 293 (623)
.|++++...+..++.++++|..
T Consensus 140 --------------------~f~~~d~~~l~~~a~~~a~ai~ 161 (169)
T 3oov_A 140 --------------------SLNDTDVDTIKLFADQASSAIV 161 (169)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 1667888899999999998764
No 49
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=96.89 E-value=0.007 Score=58.53 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=81.0
Q ss_pred ccccCChhHHHHHHHHHHHhhhhh-cCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeee---eccccc-------
Q 006963 109 NLVLPSPDFQRLCVEQLHLFRRIV-DPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN------- 177 (623)
Q Consensus 109 ~~~~~s~df~~l~~~ql~~~~~~~-~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~g~~~------- 177 (623)
.++..+.|+.++.+..++++...+ +.+ +.+||+... +.+.+.+...++... .+.. ++|+++
T Consensus 36 ~ll~~~~dl~~~L~~v~~ll~~~l~~~~-~~~iyL~d~-----~~L~l~~~~G~~~~~--~i~~GeGi~G~aa~tg~~i~ 107 (195)
T 1vhm_A 36 ALMAGETSFLATLANTSALLYERLTDIN-WAGFYLLED-----DTLVLGPFQGKIACV--RIPVGRGVCGTAVARNQVQR 107 (195)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHSSSCS-EEEEEEEET-----TEEEEEEEEESCCCS--EEETTSHHHHHHHHHTSCEE
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCCCCC-EEEEEEEEC-----CEEEEEEecCcccce--EecCCCChHHHHHhcCCEEE
Confidence 567788899999999999999999 444 556999972 335555444443311 1111 344442
Q ss_pred cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcccc
Q 006963 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTES 257 (623)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~ 257 (623)
++.....|...- . .....+.+++||+.++.++|+|.+.. . ++ .
T Consensus 108 V~Dv~~~p~~~~--~---~~~~~S~l~VPI~~~g~viGVL~i~s-----------~-----------~~-~--------- 150 (195)
T 1vhm_A 108 IEDVHVFDGHIA--C---DAASNSEIVLPLVVKNQIIGVLDIDS-----------T-----------VF-G--------- 150 (195)
T ss_dssp ESCTTTCTTCCC--S---CCCCSEEEEEEEEETTEEEEEEEEEE-----------S-----------ST-T---------
T ss_pred ECCcccCcchhh--c---CCCccEEEEEeEeECCEEEEEEEecC-----------C-----------CC-C---------
Confidence 333222222111 1 11346789999999999999999882 1 11 0
Q ss_pred chhccchhhhhhhcccCHHHHHHHHHHHHHHHHHH
Q 006963 258 HAIESFDHERMRVYKFSADQRLNAINICRSLAMAY 292 (623)
Q Consensus 258 ~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~ 292 (623)
.|++++...++.++.+++.+.
T Consensus 151 --------------~F~e~d~~~L~~lA~~ia~al 171 (195)
T 1vhm_A 151 --------------RFTDEDEQGLRQLVAQLEKVL 171 (195)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHH
Confidence 278888999999999988765
No 50
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=96.87 E-value=0.0075 Score=54.96 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=75.4
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeeeecc-----cc------c-
Q 006963 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVG-----NF------N- 177 (623)
Q Consensus 110 ~~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~l~g-----~~------~- 177 (623)
.+..+.|+.++++..++.+.+.++.+ .+++|+...+ . ..+.....++...........+ .+ .
T Consensus 23 ~l~~~~~~~~~l~~i~~~~~~~~~~~-~~~i~l~d~~---~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (181)
T 3e0y_A 23 LVSSDFDLPEVLQHVTAKVATQLKVS-VCNIYLREGD---E--VVLAATHGFDPAFIGKIRIKIGDGITGSVARDGQYIS 96 (181)
T ss_dssp HHSTTSCHHHHHHHHHHHHHHHTTCS-CEEEEEEETT---E--EEEEEEESSCGGGTTTCEEETTTSSHHHHHHHCCCEE
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEcCC---C--ceEEEecCCCHHHhccccccCCCCeeeehhhcCCeEE
Confidence 34566789999999999999999555 5558988722 1 1333333332211111111111 11 0
Q ss_pred cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcccc
Q 006963 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTES 257 (623)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~ 257 (623)
++.....+.. ..............+++||+.++.++|+|++.. . .+.
T Consensus 97 i~d~~~~~~~-~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~-----------~-----------~~~---------- 143 (181)
T 3e0y_A 97 LSRASQDPRY-RYFPELQEEKYNSMLSFPIGDKKEVYGVINLNT-----------T-----------SIR---------- 143 (181)
T ss_dssp EEEECCCCCC----------CEEEEEEEEEECSSCEEEEEEEEE-----------S-----------SCC----------
T ss_pred ecCcccCccc-cccccccccCcceEEEEEEEeCCeEEEEEEEee-----------C-----------CCC----------
Confidence 1111111100 000111122335689999999999999999983 1 100
Q ss_pred chhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 258 HAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297 (623)
Q Consensus 258 ~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q~ 297 (623)
.|++++...+..++.+++++....+.
T Consensus 144 --------------~f~~~~~~~l~~la~~~a~al~~~~~ 169 (181)
T 3e0y_A 144 --------------SFHEDEIYFVSIIANLILTAIKLRQQ 169 (181)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 16678888999999999998754443
No 51
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=96.82 E-value=0.0065 Score=54.34 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC--cCe--eeecccc------c-cCcch
Q 006963 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDI--VVLVGNF------N-MPAGL 182 (623)
Q Consensus 114 s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~--~~~--~~l~g~~------~-~~~~~ 182 (623)
|.|+.++.+..++.+...++.+ .+++|+.. + .+ .|..++.+..... ... ....|.+ - ++...
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~-~~~i~l~d--~--~~--~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCD-RASILLFD--E--AG--TMRFVAARGLSEHYQRAVDGHSPWITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCS-EEEEEEEC--T--TS--CEEEEEEESCCHHHHHHTCBCCSCC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCC-EEEEEEEc--C--CC--cEEEEeeCCCCHHHHhhccCCCchhhhhhcCCcEEEeChh
Confidence 5677889999999999999555 55588886 1 12 4555665543211 000 0011111 1 11111
Q ss_pred hhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhcc
Q 006963 183 RAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIES 262 (623)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~ 262 (623)
.++.............-...+++||..++.++|+|.+.. . ++.
T Consensus 74 ~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~-----------~-----------~~~--------------- 116 (151)
T 3hcy_A 74 DAEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYY-----------D-----------RPH--------------- 116 (151)
T ss_dssp GSCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEE-----------S-----------SCC---------------
T ss_pred hCcccchhHHHHHhcCchheEEeceEECCEEEEEEEEec-----------C-----------CCC---------------
Confidence 111000000000011224679999999999999999882 1 111
Q ss_pred chhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 006963 263 FDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296 (623)
Q Consensus 263 ~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q 296 (623)
.|++++...+..++.++++|....+
T Consensus 117 ---------~f~~~~~~ll~~~a~~~a~ai~~~r 141 (151)
T 3hcy_A 117 ---------RFADSEIGMALTIARQLGFSIQRMR 141 (151)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1667888889999999998775443
No 52
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=96.76 E-value=0.022 Score=51.93 Aligned_cols=136 Identities=13% Similarity=0.007 Sum_probs=78.3
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEE-eecCCCCC---cCeee-----eccccc----
Q 006963 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRV-VSYPGVNA---TDIVV-----LVGNFN---- 177 (623)
Q Consensus 111 ~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v-~~yp~~~~---~~~~~-----l~g~~~---- 177 (623)
+..+.|+.++.+..++.+.+.++.+ .+++|+...+ .+ .+... ..|+.... ..... +.|.+.
T Consensus 15 l~~~~d~~~~l~~i~~~~~~~~~~~-~~~i~l~d~~---~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 88 (177)
T 3k2n_A 15 IGTIRDPQELFRTVTDKLRLLFAFD-SAVIITIDRE---RR--EASVFFEMLRFELPEQLRHQTRSIAGTWLEGHLDDRT 88 (177)
T ss_dssp HTTCCSHHHHHHHHHHHHTTTCCCS-EEEEEEEETT---TT--EEEEEEEECSSCCCSTTCCSEEECTTSGGGGGTTCCS
T ss_pred HhcccCHHHHHHHHHHHHHHhcCCC-eEEEEEEcCC---CC--eEEeEEecccCCCCchhhcccCCccccHHHHHhccCC
Confidence 4567889999999999999999666 6668887622 22 34332 23333211 00111 112111
Q ss_pred --cCcchhhhhhhhhccc-------ccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccC
Q 006963 178 --MPAGLRAAEAALSSQQ-------VQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYA 248 (623)
Q Consensus 178 --~~~~~~~~~~~l~~~~-------~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 248 (623)
+..... .+...... .........+++||+.++.++|+|.+.. . ++.
T Consensus 89 ~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~-----------~-----------~~~- 143 (177)
T 3k2n_A 89 VTVASIAR--DIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVS-----------A-----------EEK- 143 (177)
T ss_dssp CEEEETTT--TCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEE-----------S-----------SCC-
T ss_pred ceEechhh--cccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEE-----------C-----------CCC-
Confidence 111000 00000000 1112235689999999999999999982 1 111
Q ss_pred CCCCCccccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 249 FPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSML 300 (623)
Q Consensus 249 ~~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q~~~~ 300 (623)
.|++++...+..++.++++|..-.+..+.
T Consensus 144 -----------------------~f~~~d~~ll~~lA~~~a~Ai~na~l~~~ 172 (177)
T 3k2n_A 144 -----------------------LWSDGDKSLLSGVSSSIAIAVSNALAYEE 172 (177)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 16778888999999999998754443333
No 53
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=96.71 E-value=0.016 Score=54.38 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=28.7
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 111 ~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
+..|.|+.++++..++.+++.++.| ++.+|.-.
T Consensus 6 Ir~sldl~~il~~~v~~v~~~l~~D-Rv~Iy~f~ 38 (171)
T 4glq_A 6 LSELRDRQAIFETLVAKGRELLACD-RVIVYAFD 38 (171)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHTCS-EEEEEEEC
T ss_pred HhhcCCHHHHHHHHHHHHHHHHCCC-eEEEEEEe
Confidence 4678899999999999999999999 99988766
No 54
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=96.69 E-value=0.022 Score=50.83 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=76.0
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC--cCeee-----ecccc------c
Q 006963 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-----LVGNF------N 177 (623)
Q Consensus 111 ~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-----l~g~~------~ 177 (623)
+..+.++.++++..++.+.+.++.+ .+.+|+.... . -.+..++.+..... ..... +.|.+ .
T Consensus 19 l~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~~~~---~--~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (171)
T 3ci6_A 19 INSSVSLHDSLDIMVNQVADAMKVD-VCSIYLLDER---N--QRYLLMASKGLNPESVGHVSLQLSEGLVGLVGQREEIV 92 (171)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHTCS-EEEEEEEETT---T--TEEEEEEEESSCGGGTTTCEEETTSHHHHHHHHHTSCE
T ss_pred HhcCCCHHHHHHHHHHHHHHHhCCC-eEEEEEEeCC---C--CEEEEEeccCCCcccccceeeeccCCeehhhhccCceE
Confidence 3456788999999999999999544 4458888722 2 25666666654322 11111 11111 0
Q ss_pred -cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 006963 178 -MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (623)
Q Consensus 178 -~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e 256 (623)
++.....+.. ..............+++||..++.++|+|++.. . ++.
T Consensus 93 ~~~d~~~~~~~-~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~-----------~-----------~~~--------- 140 (171)
T 3ci6_A 93 NLENASKHERF-AYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQN-----------K-----------QPQ--------- 140 (171)
T ss_dssp EESSGGGSTTC----------CCCEEEEEEEEETTEEEEEEEEEE-----------S-----------SCC---------
T ss_pred EecCCCcCcch-hccccccccccceEEEEeEEECCEEEEEEEEec-----------C-----------CCC---------
Confidence 1111111110 000111223346789999999999999999983 1 110
Q ss_pred cchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 006963 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (623)
Q Consensus 257 ~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l 294 (623)
.|++++...+..++.+++++...
T Consensus 141 ---------------~f~~~~~~~l~~la~~~a~al~~ 163 (171)
T 3ci6_A 141 ---------------DFSEAAESFLVTLCAQLSGVIAH 163 (171)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 16778888899999999887643
No 55
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.0064 Score=57.59 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=60.0
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhc-CCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeee---eccccc-------
Q 006963 109 NLVLPSPDFQRLCVEQLHLFRRIVD-PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN------- 177 (623)
Q Consensus 109 ~~~~~s~df~~l~~~ql~~~~~~~~-~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~g~~~------- 177 (623)
.++....|+...-...+.++...++ .+ ++|||+.+. +++.|.+....|.. ..+.. ++|+++
T Consensus 25 ~ll~~~~dl~~~L~nv~~lL~~~l~~~~-~~gfYL~~~-----~~L~l~a~~G~~a~--~ri~~GeGv~G~va~tg~~i~ 96 (171)
T 3rfb_A 25 FLLEGETNVLANLSNASALIKSRFPNTV-FAGFYLFDG-----KELVLGPFQGGVSC--IRIALGKGVCGEAAHFQETVI 96 (171)
T ss_dssp HHHTTCCBHHHHHHHHHHHHHHHCTTEE-EEEEEEECS-----SEEEEEEEESSSCC--CEEETTSHHHHHHHHTTSCEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHccCCC-EEEEEEEEC-----CEEEEEeccCCccc--eEeeCCcCHHHHHHhhCCEEE
Confidence 4556677888888888888888884 34 666999972 33555544343321 11111 344443
Q ss_pred cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 006963 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
++.....|... .. .....+.+++||+.+++++|+|.+.
T Consensus 97 V~Dv~~~p~~i--~~---~~~~~Sei~VPI~~~g~viGVL~i~ 134 (171)
T 3rfb_A 97 VGDVTTYLNYI--SC---DSLAKSEIVVPMMKNGQLLGVLDLD 134 (171)
T ss_dssp ESCTTSCSSCC--CS---CTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred ECCcccCcccc--cc---CcccCceEEEEEEECCEEEEEEEEe
Confidence 33332222211 11 1124578999999999999999998
No 56
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=96.63 E-value=0.0042 Score=69.27 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhc----------------CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCccccccc--
Q 006963 494 QALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSE-- 555 (623)
Q Consensus 494 qVL~NLL~NAlk~t----------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~-- 555 (623)
.+|..||+||+.+. .....|.|.+. .+ .-.|+|.|||.||+.+++..-|....+.....
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~~-~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~ 106 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD--KD-KRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFL 106 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEE--TT-TTEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTT
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEe--CC-CcEEEEEECCCCCCHHHHHHHHhhhcccccHHHH
Confidence 46778888888875 22245666653 33 35799999999999998766555443321000
Q ss_pred -c-----cccCCCCCCcchhHHHHHHHH
Q 006963 556 -N-----MVEDNMTWNFVAGLTVARELL 577 (623)
Q Consensus 556 -~-----~~~~~~~~GtGLGLaIvr~iv 577 (623)
. .......+..|+|++-+-.++
T Consensus 107 e~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (559)
T 1y4s_A 107 ESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (559)
T ss_dssp CC--------CCCCSSCCCSGGGHHHHE
T ss_pred HHhhccccccccccCCCCcchhhhhhcc
Confidence 0 011122356789987665553
No 57
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=96.57 E-value=0.012 Score=54.98 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=77.4
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEee-cCCCCCcCeee----ecc------ccc-c
Q 006963 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVS-YPGVNATDIVV----LVG------NFN-M 178 (623)
Q Consensus 111 ~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~-yp~~~~~~~~~----l~g------~~~-~ 178 (623)
+..+.|+.++.+..++.+.+.++.+ ++++|+-+. + ++..++. |+........+ +.| ... +
T Consensus 39 l~~~~dl~~il~~i~~~l~~~l~~d-~~~i~l~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 110 (184)
T 3p01_A 39 TQASNSLEAILTPIATAFAESFAVN-ACILQMLEG-----Q--TLSTIQGFYSQQGTVNNWLNQDPLTNEAIATGQIQVA 110 (184)
T ss_dssp HHHCSSSHHHHHHHHHHHHHHHTCS-EEEEEEEET-----T--EEEEEEEEEESSSSCCCCGGGCHHHHHHHHHCSCEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEecC-----C--ceeeeeeeccccCccCcccCCCcHHHHHHhhCCeEEE
Confidence 3456788899999999999999777 777888751 1 3444444 66543211100 111 111 1
Q ss_pred CcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccc
Q 006963 179 PAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESH 258 (623)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~ 258 (623)
+....++.. ..............+++||+.++.++|+|.+.. . .+.
T Consensus 111 ~d~~~~~~~-~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~-----------~-----------~~~----------- 156 (184)
T 3p01_A 111 ANIAKDPKL-ASISQYQDNGIQSHVVIPITYRNEMLGVLSLQW-----------Q-----------QPI----------- 156 (184)
T ss_dssp SCGGGCHHH-HTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEE-----------S-----------SCC-----------
T ss_pred eccccCccc-cchhHHHHhCccEEEEEEEEECCEEEEEEEeCc-----------C-----------CCC-----------
Confidence 221222110 001111122345789999999999999999962 1 111
Q ss_pred hhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 006963 259 AIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (623)
Q Consensus 259 ~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~ 293 (623)
.|++++...+..++.++++|..
T Consensus 157 -------------~f~~~d~~ll~~lA~q~aiAi~ 178 (184)
T 3p01_A 157 -------------SLREDELTLIHLSAQLVAIALT 178 (184)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 1567888899999999998764
No 58
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=96.51 E-value=0.029 Score=51.63 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccCHHH
Q 006963 198 PEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQ 277 (623)
Q Consensus 198 ~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e~ 277 (623)
.....+++||+.++.++|+|.+.. +. +. ..|++++
T Consensus 125 ~~~s~l~vPl~~~~~~iGvl~l~~----------~~------------~~-----------------------~~f~~~d 159 (189)
T 2e4s_A 125 TTRNILCMPIVSRGSVIGVVQMVN----------KI------------SG-----------------------SAFSKTD 159 (189)
T ss_dssp CCCCEEEEEEEETTEEEEEEEEEE----------ET------------TS-----------------------SSCCHHH
T ss_pred ccceEEEEEeccCCeEEEEEEEEe----------CC------------CC-----------------------CCCCHHH
Confidence 345789999999999999999983 01 00 0267788
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006963 278 RLNAINICRSLAMAYVMDQ 296 (623)
Q Consensus 278 r~~~~~ia~~lalA~~l~q 296 (623)
...+..++.++++|..-.+
T Consensus 160 ~~ll~~la~~~a~ai~na~ 178 (189)
T 2e4s_A 160 ENNFKMFAVFCALALHCAN 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999999875443
No 59
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.50 E-value=0.0053 Score=65.69 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhc--CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhh--------HhhhcCCCccc-cccccccc
Q 006963 491 ALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT--------QMHSLTPFGSE-LFSENMVE 559 (623)
Q Consensus 491 ~L~qVL~NLL~NAlk~t--~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~--------~~~iFepF~~~-~~s~~~~~ 559 (623)
.+..++..|++||++.. .....|.|.+. .++ .|+|+|||.|||.+. .+-+|..++.+ +.... .+
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~--~~g--~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~-~~ 108 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIH--ADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN-SY 108 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--TTS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSS-SC
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEe--CCC--EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCC-cc
Confidence 45666666666666552 22368888885 333 799999999999987 34467655543 21111 11
Q ss_pred CCCCCC-cchhHHHHHHHHH
Q 006963 560 DNMTWN-FVAGLTVARELLE 578 (623)
Q Consensus 560 ~~~~~G-tGLGLaIvr~ive 578 (623)
. .+.| .|.||+.+..+.+
T Consensus 109 ~-vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 109 K-VSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp S-SCSCCSSCHHHHHHHTEE
T ss_pred c-ccCCccccchHHHHHhcC
Confidence 1 1223 8999999998875
No 60
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=96.48 E-value=0.036 Score=48.72 Aligned_cols=126 Identities=13% Similarity=0.059 Sum_probs=75.1
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceEEEEeecCCCCC--c---Ceee---ecccc------c
Q 006963 113 PSPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNA--T---DIVV---LVGNF------N 177 (623)
Q Consensus 113 ~s~df~~l~~~ql~~~~~~~~~~a~~~-vYl~~~~~~~~~~~~l~~v~~yp~~~~--~---~~~~---l~g~~------~ 177 (623)
.+.|+.++.+..++.+.+.+ ++..+ +|+.. + .+ .|..++.+..... . .+.. +.|.+ .
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~--~~~~~~i~l~d--~--~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLV--DARYGAMEVHD--R--QH--RVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPL 74 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHT--TEEEEEEEEEC--T--TC--CEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCE
T ss_pred CccCHHHHHHHHHHHHHHHh--CCCEEEEEEEC--C--CC--CEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcE
Confidence 36789999999999999999 66555 99886 2 12 4555555543211 0 1110 11111 1
Q ss_pred -cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 006963 178 -MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (623)
Q Consensus 178 -~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e 256 (623)
++.....+. ..............+++||+.++.++|+|++.. . .+..
T Consensus 75 ~~~d~~~~~~--~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~-----------~-----------~~~~-------- 122 (153)
T 2w3g_A 75 RLDDVSAHPA--SIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTD-----------K-----------TNGQ-------- 122 (153)
T ss_dssp EESSGGGSTT--CCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEE-----------E-----------TTSC--------
T ss_pred EecCcccCch--hcCCCCcCCCCCeEEEeeEEECCEEEEEEEEee-----------C-----------CCCC--------
Confidence 111111111 101111223346789999999999999999983 1 1100
Q ss_pred cchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 006963 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (623)
Q Consensus 257 ~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~ 293 (623)
.|++++...+..++.++++|..
T Consensus 123 ---------------~f~~~~~~~l~~la~~~a~ai~ 144 (153)
T 2w3g_A 123 ---------------PFSDDDEVLVQALAAAAGIAVA 144 (153)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 1677888899999999998764
No 61
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0042 Score=70.64 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcC--------------CC--CeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCC
Q 006963 495 ALSNLIEGALMRTQ--------------VG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547 (623)
Q Consensus 495 VL~NLL~NAlk~t~--------------~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFep 547 (623)
+|..||+||+.+.. .. ..|.|... . +.-.|+|.|||+||+.+++..-|..
T Consensus 30 fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d--~-~~~~I~I~DnGiGMt~edl~~~l~t 95 (677)
T 2cg9_A 30 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPK--P-EQKVLEIRDSGIGMTKAELINNLGT 95 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEE--G-GGTEEEEEECSCCCCHHHHHGGGSS
T ss_pred HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEe--C-CCCEEEEEECCCCCCHHHHHHHHHh
Confidence 67888888888741 12 34666553 2 2347999999999999987665543
No 62
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=96.29 E-value=0.0095 Score=63.85 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhhc---CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhh--------HhhhcCCCcc-cccccc
Q 006963 489 EPALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMT--------QMHSLTPFGS-ELFSEN 556 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t---~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~--------~~~iFepF~~-~~~s~~ 556 (623)
...|..++..||+||++.. .....|.|.+. .++ -.|+|.|||.|||.+. .+-+|..... ++....
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~-~~~--~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~ 126 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTID-PEN--NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD 126 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TTT--TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE-CCC--CEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC
Confidence 4578899999999999875 33578999886 322 3699999999999886 3445553222 221111
Q ss_pred cccCCCCCCcchhHHHHHHHH
Q 006963 557 MVEDNMTWNFVAGLTVARELL 577 (623)
Q Consensus 557 ~~~~~~~~GtGLGLaIvr~iv 577 (623)
.+.-..+-.|.|++.+..+-
T Consensus 127 -~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 127 -EKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp -GCCCCSCCSSCHHHHHHHTE
T ss_pred -cccccCCccccceeeeEEec
Confidence 11111123789999998873
No 63
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=96.25 E-value=0.0017 Score=66.17 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhh
Q 006963 495 ALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH 543 (623)
Q Consensus 495 VL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (623)
+|..||+||..+.. .++.+.|.+... .+.-.|.|.|||+||+.+++..
T Consensus 50 fLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d-~~~~tLtI~DNGiGMt~edL~~ 111 (281)
T 3peh_A 50 FLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISAN-KEKNILSITDTGIGMTKVDLIN 111 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEc-CCCcEEEEEeCCCCCCHHHHHH
Confidence 45667777766531 123344444322 2335699999999999998654
No 64
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=96.23 E-value=0.06 Score=49.02 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=40.5
Q ss_pred CCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccCHHHHH
Q 006963 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (623)
Q Consensus 200 ~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~ 279 (623)
...+++||..++.++|+|.+.. +. ... .|++++..
T Consensus 85 ~s~l~vPL~~~~~~~GvL~l~~----------~~------------~~~-----------------------~f~~~d~~ 119 (149)
T 2vjw_A 85 GPALVLPLRATDTVAGVLVAVQ----------GS------------GAR-----------------------PFTAEQLE 119 (149)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE----------ET------------TCC-----------------------CCCHHHHH
T ss_pred CeEEEEEEccCCeEEEEEEEee----------CC------------CCC-----------------------CCCHHHHH
Confidence 4689999999999999999983 00 001 27888999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006963 280 NAINICRSLAMAYVMDQ 296 (623)
Q Consensus 280 ~~~~ia~~lalA~~l~q 296 (623)
.+..+|.+.++|+...+
T Consensus 120 ll~~lA~~aa~al~~a~ 136 (149)
T 2vjw_A 120 MMTGFADQAAVAWQLAS 136 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999875443
No 65
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=96.13 E-value=0.092 Score=54.16 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeee-----eccccc-------cCc
Q 006963 113 PSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV-----LVGNFN-------MPA 180 (623)
Q Consensus 113 ~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~-----l~g~~~-------~~~ 180 (623)
.+.|+.++++..++.+.+.++.+ ++++|+...+ . .++...+.+.......+.. ++|.+. ++.
T Consensus 24 ~~~dl~~~l~~i~~~~~~~~~~~-~~~i~l~d~~---~--~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~~~~~i~d 97 (368)
T 1mc0_A 24 FDLDATSLQLKVLQYLQQETQAT-HCCLLLVSED---N--LQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQCIQLKD 97 (368)
T ss_dssp CCSSHHHHHHHHHHHHHHHSCEE-EEEEEEECSS---S--CEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCCCEEGGG
T ss_pred hhhhHHHHHHHHHHHHHHHhCCc-EEEEEEEeCC---C--CeEEEEecCCCccccceeeccccCHHHHHHhcCCeEEecc
Confidence 46699999999999999999444 4559998622 1 2454444332110000101 112211 222
Q ss_pred chhhhhhhhhcccccCCCCCCeEEEeeeeC--CeEEEEEEEe
Q 006963 181 GLRAAEAALSSQQVQVVPEQRAVVFPMVKH--PFVVGFLVAE 220 (623)
Q Consensus 181 ~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~--~~v~G~Lv~~ 220 (623)
...++.... ......+....+++||+.+ +.++|+|.+.
T Consensus 98 ~~~~~~~~~--~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~ 137 (368)
T 1mc0_A 98 LTSDDVQQL--QNMLGCELQAMLCVPVISRATDQVVALACAF 137 (368)
T ss_dssp SCHHHHHHH--HHHHCSCCCCEEEEEEECTTTCSEEEEEEEE
T ss_pred ccccccccc--ccccCcccceEEEEEeecCCCCcEEEEEEee
Confidence 222121000 0111234668999999999 9999999977
No 66
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=96.11 E-value=0.026 Score=52.83 Aligned_cols=135 Identities=9% Similarity=0.119 Sum_probs=78.1
Q ss_pred cccCCh-hHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceEEEE-eec-CCCC--------CcCeee-----e
Q 006963 110 LVLPSP-DFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRV-VSY-PGVN--------ATDIVV-----L 172 (623)
Q Consensus 110 ~~~~s~-df~~l~~~ql~~~~~~~~~~a~~~-vYl~~~~~~~~~~~~l~~v-~~y-p~~~--------~~~~~~-----l 172 (623)
.+..+. |+.++.+..++.+.+.+ +|..+ +||.. ...+..+|... ..+ ++.. ...+.. +
T Consensus 15 ~l~~~~~dl~~ll~~il~~~~~~~--~a~~~~i~L~d---~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gi 89 (180)
T 3dba_A 15 EIQDEAGSMEKIVHKTLQRLSQLL--AADRCSMFICR---SRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVFPLDIGI 89 (180)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHH--TEEEEEEEEEE---EETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEECTTSSH
T ss_pred HHHHhhhcHHHHHHHHHHHHHHHh--CcceEEEEEEe---CCCCcceeeeeeeccccCccchhhccccccceeeeCCCCH
Confidence 345667 99999999999999999 55555 99986 21222344432 211 1110 111111 2
Q ss_pred ccccc-------cCcchhhhhhh-hhcccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcc
Q 006963 173 VGNFN-------MPAGLRAAEAA-LSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSE 244 (623)
Q Consensus 173 ~g~~~-------~~~~~~~~~~~-l~~~~~~~~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~ 244 (623)
+|.+. ++....++... .... .......+.+++||..++.++|+|.+.. +
T Consensus 90 ~g~v~~tg~~v~i~d~~~d~~f~~~~~~-~~~~~~~S~L~vPl~~~~~viGVL~l~n-----------~----------- 146 (180)
T 3dba_A 90 AGWVAHTKKFFNIPDVKKNNHFSDYLDK-KTGYTTVNMMAIPITQGKEVLAVVMALN-----------K----------- 146 (180)
T ss_dssp HHHHHHHTCCEEESCGGGCTTCCCHHHH-HHCCCCCCEEEEEEEETTEEEEEEEEEE-----------E-----------
T ss_pred HHHHHHhCCEEEecCCCCCcccChhhcc-ccCccccEEEEEEeccCCEEEEEEEEEe-----------C-----------
Confidence 22221 23222222110 0000 0112356899999999999999999982 1
Q ss_pred cccCCCCCCccccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 006963 245 EVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295 (623)
Q Consensus 245 ~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~ 295 (623)
... ..|++++...++.+|.+.++++-++
T Consensus 147 ~~~-----------------------~~Ft~~d~~lL~~lA~~aa~~i~~~ 174 (180)
T 3dba_A 147 LNA-----------------------SEFSKEDEEVFKKYLNFISLVLRLE 174 (180)
T ss_dssp SSS-----------------------SSCCHHHHHHHHHHHHHHHHHTC--
T ss_pred CCC-----------------------CCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 000 1288899999999999999887554
No 67
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=96.05 E-value=0.004 Score=70.71 Aligned_cols=51 Identities=22% Similarity=0.164 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhc----------------CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCC
Q 006963 494 QALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTP 547 (623)
Q Consensus 494 qVL~NLL~NAlk~t----------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFep 547 (623)
.+|..||+||+.+. .....|.|.+. . +.-.|+|.|||+||+.+++..-|..
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d--~-~~~~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--K-EKNLLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEE--T-TTTEEEEEECSCCCCHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEe--C-CCCEEEEEECCCCCCHHHHHHHHhh
Confidence 56788888988875 11135555553 3 3356999999999999987665544
No 68
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.05 E-value=0.0048 Score=59.99 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEeeCCCCCChhhH--------hh-hcCCCcccccccccccCC
Q 006963 493 RQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ--------MH-SLTPFGSELFSENMVEDN 561 (623)
Q Consensus 493 ~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~--------~~-iFepF~~~~~s~~~~~~~ 561 (623)
..++..||+||++..-. ...|.|.+. .++ .|+|.|||.|||.++. +. ++.+..+++.... .+.
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~--~~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~-~~~- 92 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILH--ADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK-NYQ- 92 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------------
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEe--CCC--EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCC-ccc-
Confidence 56677777777766222 368888885 333 6999999999999873 34 3444444332211 000
Q ss_pred CCCC-cchhHHHHHHHH
Q 006963 562 MTWN-FVAGLTVARELL 577 (623)
Q Consensus 562 ~~~G-tGLGLaIvr~iv 577 (623)
.+.| .|.||+.+..+.
T Consensus 93 ~s~GfrGeglssinalS 109 (201)
T 3fv5_A 93 FSGGLHGVGISVVNALS 109 (201)
T ss_dssp ---------CHHHHHTE
T ss_pred ccCcccceecchhhccc
Confidence 1123 688899888776
No 69
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=95.91 E-value=0.0053 Score=69.35 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhc----------------CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcc-ccc---
Q 006963 494 QALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS-ELF--- 553 (623)
Q Consensus 494 qVL~NLL~NAlk~t----------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~-~~~--- 553 (623)
.+|..||+||+.+. .....|.|.+. . +.-.|+|.|||.||+.+++..-|....+ +..
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d--~-~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~ 106 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD--K-DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFL 106 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEE--T-TTTEEEEEECSCCCCHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEe--C-CCcEEEEEECCCCCCHHHHHHHHHhhcccccHHHH
Confidence 56788899998875 11235666553 3 2357999999999999986654432221 110
Q ss_pred ---ccc-cccCCCCCCcchhHHHHHHHH
Q 006963 554 ---SEN-MVEDNMTWNFVAGLTVARELL 577 (623)
Q Consensus 554 ---s~~-~~~~~~~~GtGLGLaIvr~iv 577 (623)
... .......+..|+|++-+-.++
T Consensus 107 ~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 107 ESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp --------CCTTHHHHHHHHHHHHHHHE
T ss_pred HHhcccccccccccCCCCccHHHHHhcC
Confidence 000 000011135799998777665
No 70
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.85 E-value=0.0046 Score=61.62 Aligned_cols=54 Identities=20% Similarity=0.165 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhcC--------------CC--CeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcc
Q 006963 494 QALSNLIEGALMRTQ--------------VG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGS 550 (623)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~ 550 (623)
.+|..||+||+++.. .+ ..|.|... . +.-.|.|.|||.||+.+++...|..+.+
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d--~-~~~~i~I~DnG~GMt~edl~~~l~~ia~ 104 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--K-EKNLLHVTDTGVGMTREELVKNLGTIAK 104 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE--T-TTTEEEEEECSCCCCHHHHHHHHHCC--
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEc--C-CCCEEEEEECCcCCCHHHHHHHHhhhcc
Confidence 567888889888742 12 34555443 2 3357999999999999998777655433
No 71
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=95.83 E-value=0.0084 Score=59.30 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEeeCCCCCChhh-------HhhhcCCCccc-ccccccc
Q 006963 489 EPALRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMT-------QMHSLTPFGSE-LFSENMV 558 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~-------~~~iFepF~~~-~~s~~~~ 558 (623)
..-|..++..+|+||+...-. ...|.|.+. .++ .|+|.|||.|||.+. .+-+|.....+ +.... .
T Consensus 38 ~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~--~~g--~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~-~ 112 (226)
T 4emv_A 38 GAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN--KDG--SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQG-G 112 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS--CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC----------
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCcEEEEEEe--CCC--eEEEEEcCCCccccccccCceehheeEEeecccCccCcc-c
Confidence 456777777777777765322 357888774 233 599999999999987 55566433332 21111 0
Q ss_pred cCCCCCCcchhHHHHHHHHH
Q 006963 559 EDNMTWNFVAGLTVARELLE 578 (623)
Q Consensus 559 ~~~~~~GtGLGLaIvr~ive 578 (623)
+....+-.|.|++.+.-+-+
T Consensus 113 yk~SgGlhGvG~svvNALS~ 132 (226)
T 4emv_A 113 YKTSGGLHGVGSSVVNALSS 132 (226)
T ss_dssp -----CGGGCCHHHHHHTEE
T ss_pred eEeccccccccchhhhhccc
Confidence 00001237899999988764
No 72
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=95.80 E-value=0.063 Score=50.86 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=57.3
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhc---CCc-eEEEEEecCCCCccCcceEEEEeecCCCCCcCeee---eccccc----
Q 006963 109 NLVLPSPDFQRLCVEQLHLFRRIVD---PDA-VLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN---- 177 (623)
Q Consensus 109 ~~~~~s~df~~l~~~ql~~~~~~~~---~~a-~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~g~~~---- 177 (623)
.++..+.|+..+.+..+.++...+. +++ +.+||+...+. .+.+.+.+....+. ...+.. ++|++.
T Consensus 34 ~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~--~~~L~l~~~~g~~~--~~~i~~g~Gi~G~aa~~g~ 109 (180)
T 1f5m_A 34 GLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASE--ENTLILGPFQGKVA--CQMIQFGKGVCGTAASTKE 109 (180)
T ss_dssp HHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSS--SCEEEEEEEEESCC--CSEEETTSHHHHHHHHHTS
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCC--CCeEEEeecCCCcc--ceeecCCCcchhhhhhcCC
Confidence 5667778888888888888887772 233 55599987211 13333332221111 111111 234432
Q ss_pred ---cCcchhhhhhhhhcccccCCCCCCeEEEeeee-CCeEEEEEEEe
Q 006963 178 ---MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVK-HPFVVGFLVAE 220 (623)
Q Consensus 178 ---~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~-~~~v~G~Lv~~ 220 (623)
++.....|... .......+.+++||+. ++.++|+|.+.
T Consensus 110 ~v~v~Dv~~dp~~~-----~~~~~~~S~l~vPi~~~~g~viGVL~l~ 151 (180)
T 1f5m_A 110 TQIVPDVNKYPGHI-----ACDGETKSEIVVPIISNDGKTLGVIDID 151 (180)
T ss_dssp CEEESCGGGSTTCC-----CSSTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEeCCcccCcccc-----ccCcccceEEEEEEEcCCCeEEEEEEec
Confidence 22222222111 1122346789999999 99999999998
No 73
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=95.79 E-value=0.018 Score=62.01 Aligned_cols=85 Identities=8% Similarity=0.103 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhc---CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhh--------hcCCCccc-cccccc
Q 006963 490 PALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMH--------SLTPFGSE-LFSENM 557 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t---~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~--------iFepF~~~-~~s~~~ 557 (623)
..|..++..+|+||++.. +....|.|.+. .++ -.|+|.|||.|||.+.... +|.....+ +...+
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~-~d~--~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~- 138 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIH-AEE--HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD- 138 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TTT--TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTT-
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEE-CCC--CEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCC-
Confidence 468888888888888653 44578999886 332 2599999999999875332 55443332 11111
Q ss_pred ccCCCCCCcchhHHHHHHHHH
Q 006963 558 VEDNMTWNFVAGLTVARELLE 578 (623)
Q Consensus 558 ~~~~~~~GtGLGLaIvr~ive 578 (623)
.+.-..+-.|.|.+.|.-+-+
T Consensus 139 ~ykvSGGLhGVG~SvVNALS~ 159 (418)
T 1pvg_A 139 EKKVTGGRNGYGAKLCNIFST 159 (418)
T ss_dssp SCCCCSCCSSCHHHHHHHTEE
T ss_pred ceeccCCccceeeeeeeeccc
Confidence 111011237999999998754
No 74
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=95.63 E-value=0.0081 Score=59.20 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhhc--CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhH--------hhhcCCCcc-cccccccc
Q 006963 490 PALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ--------MHSLTPFGS-ELFSENMV 558 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t--~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~--------~~iFepF~~-~~~s~~~~ 558 (623)
..|..++..||+||++.. .....|.|.+. .++ .|+|+|||.|||.+.. +-+|..... ++.... .
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~--~~g--~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~-~ 108 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIH--ADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN-S 108 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEEC--TTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTT-C
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEe--CCC--cEEEEECCcCcccccccccCcchhhheeeecccCCCcCCC-c
Confidence 467777777777777763 22368888885 233 5999999999998853 344532222 221111 0
Q ss_pred cCCCCCCcchhHHHHHHHHH
Q 006963 559 EDNMTWNFVAGLTVARELLE 578 (623)
Q Consensus 559 ~~~~~~GtGLGLaIvr~ive 578 (623)
+....+-.|.|++.+.-+-+
T Consensus 109 yk~SgGlhGvG~svvNAlS~ 128 (220)
T 4duh_A 109 YKVSGGLHGVGVSVVNALSQ 128 (220)
T ss_dssp --------CCCHHHHHHTEE
T ss_pred cccccCccceecchhccccc
Confidence 10001137899999988764
No 75
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=95.60 E-value=0.11 Score=47.43 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=72.8
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCee-e-----ecccc------c-
Q 006963 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIV-V-----LVGNF------N- 177 (623)
Q Consensus 111 ~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~-~-----l~g~~------~- 177 (623)
+..+.|+.++.+..++.+.+.++.+ ...+|+.+ + .+.+.+.....+|........ . +.|.+ .
T Consensus 12 l~~~~~~~~~l~~i~~~~~~~~~~~-~~~i~l~~--~--~~~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (181)
T 2qyb_A 12 MNRTLDLQIIMDDLLNLLLKEFKLD-LAVIRLVD--E--KGVLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLSNRLQF 86 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCS-EEEEEEEC--T--TSCEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHHTSCEE
T ss_pred HHhccCHHHHHHHHHHHHHHHhCCc-EEEEEEEC--C--CCCEEEEEEeCCCcceecccccccCCCCchhhhhhcCCCEE
Confidence 4456789999999999999999544 33477764 1 233333333333322110000 0 11111 0
Q ss_pred cCcchhhhhhhhhcccccCCCCCCeEEEeeeeCCe-EEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 006963 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPF-VVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (623)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~lv~PL~~~~~-v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e 256 (623)
++.....+.... ........-...+++||..++. ++|+|.+.. +. .+ .
T Consensus 87 v~d~~~~~~~~~-~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~----------~~-----------~~-~-------- 135 (181)
T 2qyb_A 87 VNDTQYMTKPLT-RELMQKEGIKSFAHIPISRKGEPPFGILSVFS----------RT-----------IV-G-------- 135 (181)
T ss_dssp ESCGGGCSCHHH-HHHHHHTTCCEEEEEEECCTTSCCCEEEEEEE----------SS-----------CS-S--------
T ss_pred ecChhcCCchhh-HHHHHhcCcceEEEEEEEeCCCeEEEEEEEec----------CC-----------CC-C--------
Confidence 111111010000 0000011234688999999999 999999982 01 01 0
Q ss_pred cchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 006963 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295 (623)
Q Consensus 257 ~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~ 295 (623)
.|++++...+..++.++++|....
T Consensus 136 ---------------~f~~~d~~lL~~la~~~a~al~~a 159 (181)
T 2qyb_A 136 ---------------LFNEPFLNLLESLAGQLAQAVKIV 159 (181)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 277888889999999999987543
No 76
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=95.58 E-value=0.57 Score=51.76 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.7
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 114 s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
|.|+.++|+..++.+++.+|.| ++++|==.
T Consensus 150 sl~l~~il~~~v~evr~ll~~D-RVmIYrF~ 179 (520)
T 3zq5_A 150 QANLRDFYDVIVEEVRRMTGFD-RVMLYRFD 179 (520)
T ss_dssp SCCHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHhCCC-EEEEEEEc
Confidence 4578999999999999999999 99988765
No 77
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=95.38 E-value=0.43 Score=49.84 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceEEEEeecCCCCC-cCeee-----eccccc-------cCcch
Q 006963 117 FQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNA-TDIVV-----LVGNFN-------MPAGL 182 (623)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~-vYl~~~~~~~~~~~~l~~v~~yp~~~~-~~~~~-----l~g~~~-------~~~~~ 182 (623)
+.++++..++.+...+ +|..+ +|+.... . .+|...+.+..... ..+.+ ++|.+. ++...
T Consensus 27 l~~~l~~i~~~~~~~~--~a~~~~i~l~d~~---~--~~l~~~~~~g~~~~~~~~~~~~~~g~~g~v~~~~~~v~i~d~~ 99 (398)
T 1ykd_A 27 LQEMLQSITLKTGELL--GADRTTIFLLDEE---K--QELWSIVAAGEGDRSLEIRIPADKGIAGEVATFKQVVNIPFDF 99 (398)
T ss_dssp HHHHHHHHHHHHHHHH--TEEEEEEEEEETT---T--TEEEEEEECCGGGCCCCCEEETTSHHHHHHHHHCCCEEECSCG
T ss_pred HHHHHHHHHHHHHHHh--CCceEEEEEEECC---C--CeEEEEeecCCCCccceeecCCCCchhhhhhccCcEEeccchh
Confidence 4556666677789999 55555 9998722 2 25666665543211 11111 122221 22222
Q ss_pred hh---hhhhhhcccccCCCCCCeEEEeeee-CCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccc
Q 006963 183 RA---AEAALSSQQVQVVPEQRAVVFPMVK-HPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESH 258 (623)
Q Consensus 183 ~~---~~~~l~~~~~~~~~~~~~lv~PL~~-~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~ 258 (623)
.. +.................+++||.. ++.++|+|.+..... ...+ ..|..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~~~-------~~~~---------~~~~l--------- 154 (398)
T 1ykd_A 100 YHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLK-------PYSP---------PDALL--------- 154 (398)
T ss_dssp GGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEEBC-------SCCC---------TTCCH---------
T ss_pred cccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEeccCC-------cccc---------ccccc---------
Confidence 21 1110000001122345789999996 699999999983100 0000 00100
Q ss_pred hhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 006963 259 AIESFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (623)
Q Consensus 259 ~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l 294 (623)
. +......|++++...+..++.+++++...
T Consensus 155 -~-----~~~~~~~f~~~d~~~l~~~a~~~~~al~~ 184 (398)
T 1ykd_A 155 -A-----ERIDNQGFTSADEQLFQEFAPSIRLILES 184 (398)
T ss_dssp -H-----HHBCTTCCCHHHHHHGGGTHHHHHHHHHH
T ss_pred -c-----cccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111238889999999999998887643
No 78
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=95.33 E-value=0.45 Score=44.85 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=24.8
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 110 ~~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
.+..+.|+.++++..++.+++.++.+ ++++|+-.
T Consensus 24 ~i~~~~dl~~il~~~~~~l~~~l~~d-r~~i~~~d 57 (208)
T 2lb5_A 24 QIRQSLELDQILRATVEEVRAFLGTD-RVKVYRFD 57 (208)
T ss_dssp -------CHHHHHHHHHHHHHHHCCS-EEEEEECC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHCCC-EEEEEEEc
Confidence 44567889999999999999999888 88899876
No 79
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=95.16 E-value=0.031 Score=54.09 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHhhc--CCCCeEEEEEEEecCCeEEEEEeeCCCCCChh
Q 006963 488 EEPALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t--~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (623)
+...+..++..||+||++.. .....|.|.+. . ++ .|+|.|||.|||.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~-~-~g--~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIE-K-DN--WIKVTDNGRGIPVD 77 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEE-G-GG--EEEEEECSSCCCCS
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEe-C-CC--eEEEEECCCCcccc
Confidence 45678888888888888852 32478999886 2 23 79999999999986
No 80
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=95.13 E-value=0.51 Score=51.93 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=27.9
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
.-|.|+.++|+..++.+++.+|.| ++++|==.
T Consensus 135 r~sl~l~~il~~~v~evr~ll~~D-RV~IYrF~ 166 (505)
T 3nhq_A 135 QLHNDTASLLSNVTDELRRMTGYD-RVMAYRFR 166 (505)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEec
Confidence 345689999999999999999999 99988665
No 81
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=94.66 E-value=0.024 Score=60.14 Aligned_cols=81 Identities=14% Similarity=-0.018 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCCcccccccccccCCCCCC
Q 006963 488 EEPALRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPFGSELFSENMVEDNMTWN 565 (623)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF~~~~~s~~~~~~~~~~G 565 (623)
+...+..++..||+||++..-. ...|.|.+. .++ .|+|+|||.|||. +-+|....+++.......+.+. =
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~--~~g--~I~V~DnGrGIp~---e~v~~lhagsKf~~~~~~~~y~-v 98 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVG--GDG--SIALFCTSRTVTA---ENLVRVATGAGFLGRPPGDGWG-W 98 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS--CEEEEEEESSCCH---HHHHHHHTTTTGGGSSCCCSTT-T
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEe--CCC--EEEEEECCCCcCH---hHeeeeecCCCcCCCccccccc-c
Confidence 5578999999999999986322 257888885 333 7999999999998 3344222222211100001111 2
Q ss_pred cchhHHHHHHHH
Q 006963 566 FVAGLTVARELL 577 (623)
Q Consensus 566 tGLGLaIvr~iv 577 (623)
+| ||+.+..+-
T Consensus 99 sG-Gls~vnalS 109 (369)
T 3cwv_A 99 DS-MLVVSLALS 109 (369)
T ss_dssp TS-SHHHHHHTE
T ss_pred cC-HHHHHHHhh
Confidence 35 888888774
No 82
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=94.41 E-value=0.5 Score=53.88 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeee----eccccc-------cCcch
Q 006963 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV----LVGNFN-------MPAGL 182 (623)
Q Consensus 114 s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~----l~g~~~-------~~~~~ 182 (623)
+.|+.++++..++.+...++.+ ++++|+.... .+ +|...+.+.......... ++|.+. ++...
T Consensus 26 ~ldl~~ll~~il~~l~~~l~ad-~~~i~L~d~~---~~--~l~~~~~~g~~~~~~~~~p~~Gi~g~v~~~~~pv~i~d~~ 99 (691)
T 3ibj_A 26 DLDASSLQLKVLQYLQQETRAS-RCCLLLVSED---NL--QLSCKVIGDKVLGEEVSFPLTGCLGQVVEDKKSIQLKDLT 99 (691)
T ss_dssp CSSHHHHHHHHHHHHHHHTTBS-CEEEEEECTT---SS--EEEEEEETTEEEEEEEEEECCSSSHHHHHHCCCEEGGGSC
T ss_pred hccHHHHHHHHHHHHHHHhCCC-EEEEEEEECC---CC--eEEEEecCCCccccceecCCccHHHHHHHHCCeEEeccch
Confidence 7789999999999999999555 5559987622 22 333222222110000011 222221 33322
Q ss_pred hhhhhhhhcccccCCCCCCeEEEeeeeC--CeEEEEEEEe
Q 006963 183 RAAEAALSSQQVQVVPEQRAVVFPMVKH--PFVVGFLVAE 220 (623)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~~lv~PL~~~--~~v~G~Lv~~ 220 (623)
..+.... ......+....+++||..+ +.++|+|.+.
T Consensus 100 ~~~~~~~--~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~ 137 (691)
T 3ibj_A 100 SEDVQQL--QSMLGCELQAMLCVPVISRATDQVVALACAF 137 (691)
T ss_dssp HHHHHHH--HHHHTSCCSCEEEEEEECSSSCSEEEEEEEE
T ss_pred hcccccc--ccccCCccceEEEEEeEcCCCCcEEEEEEEE
Confidence 2221100 0111234578999999998 9999999988
No 83
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=94.38 E-value=0.27 Score=51.37 Aligned_cols=150 Identities=11% Similarity=0.087 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceEEEEeecCCCCCcCeee-----eccccc-------cC-
Q 006963 114 SPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNATDIVV-----LVGNFN-------MP- 179 (623)
Q Consensus 114 s~df~~l~~~ql~~~~~~~~~~a~~~-vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~-----l~g~~~-------~~- 179 (623)
+.|+.++.+..++.+.+.+ +|..+ +|+.... . -.|...+..++.....+.. +.|.+. ++
T Consensus 212 ~~dl~~~l~~i~~~~~~~~--~~~~~~i~l~d~~---~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~ 284 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELM--NADRSTLWLIDRD---R--HELWTKITQDNGSTKELRVPIGKGFAGIVAASGQKLNIPF 284 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHT--TEEEEEEEEEETT---T--TEEEEEEECSSSCEEEEEEETTSHHHHHHHHHCCCEEECS
T ss_pred cCCHHHHHHHHHHHHHHHh--CcCeEEEEEEECC---C--CEEEEEEecCCCceeeeeccCCCchhhHHhccCCeEEecc
Confidence 6789999999999999999 55444 9998722 1 2455555422221111111 112111 22
Q ss_pred cchhhhhh-hh--hcccccCCCCCCeEEEeeee-CCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 006963 180 AGLRAAEA-AL--SSQQVQVVPEQRAVVFPMVK-HPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (623)
Q Consensus 180 ~~~~~~~~-~l--~~~~~~~~~~~~~lv~PL~~-~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 255 (623)
.....+.. .. ... ....+....+++||.. ++.++|+|.+..... .|..+.... +.|..++
T Consensus 285 d~~~~~~~~~~~~~~~-~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~----------~~~~~~~~~-~~~~~~~---- 348 (398)
T 1ykd_A 285 DLYDHPDSATAKQIDQ-QNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK----------TGEFPPYNP-ETWPIAP---- 348 (398)
T ss_dssp CGGGSTTCHHHHHHHH-HHTCCCCCEEEEEEECSSSCEEEEEEEEEECC----------SSCCCCCCG-GGTTCCC----
T ss_pred ccccCcccCcccchhh-hcCCeeeeEEEEeeecCCCCEEEEEEEEecCC----------ccccccccc-ccccccc----
Confidence 22111110 00 000 0122356799999995 999999999983110 000000011 3343300
Q ss_pred ccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 006963 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297 (623)
Q Consensus 256 e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q~ 297 (623)
+ -....|++++...+..++.++++|..-.+.
T Consensus 349 ---~--------~~~~~f~~~d~~ll~~la~~~a~al~na~l 379 (398)
T 1ykd_A 349 ---E--------CFQASFDRNDEEFMEAFNIQAGVALQNAQL 379 (398)
T ss_dssp ---G--------GGCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---c--------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011239999999999999999998744433
No 84
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=94.31 E-value=0.5 Score=49.34 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.7
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
.-|.|+.++|+..++.+++.+|.| ++.+|==.
T Consensus 157 r~sl~l~~il~~tv~evr~ll~~D-RV~IYrF~ 188 (337)
T 2ool_A 157 QTAADLPTACWIAASEVRRITGFD-RIKVYQFA 188 (337)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCC-eeEEEEEc
Confidence 346788999999999999999999 99988654
No 85
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=94.29 E-value=0.12 Score=59.00 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCC-C--cCeee-----eccccc-------c
Q 006963 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVN-A--TDIVV-----LVGNFN-------M 178 (623)
Q Consensus 114 s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~-~--~~~~~-----l~g~~~-------~ 178 (623)
+.|..++.+..++.+.+.++.+ +++||+... + ++...+...... . ..... ++|.+. +
T Consensus 194 ~~dl~~ll~~i~~~~~~~l~ad-~~~i~L~d~-----~--~l~~~~~~g~~~~~~~~~~~~~~~~gi~g~v~~~g~~v~i 265 (691)
T 3ibj_A 194 LDDVSVLLQEIITEARNLSNAE-ICSVFLLDQ-----N--ELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNI 265 (691)
T ss_dssp CSCTTTHHHHHHHHHHHHHTEE-EEEEEEECS-----S--EEEEECCSSSCCSSCCCEEEEETTSHHHHHHHHHCSCEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCC-eEEEEEEeC-----C--eEEEEeecCCcccccccceeccCCCCHHHHHHHhCCEEEe
Confidence 5788888899999999999444 444999872 2 344444333221 1 11111 112211 2
Q ss_pred Ccchhhhhh-hhhcccccCCCCCCeEEEeeeeC-CeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 006963 179 PAGLRAAEA-ALSSQQVQVVPEQRAVVFPMVKH-PFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (623)
Q Consensus 179 ~~~~~~~~~-~l~~~~~~~~~~~~~lv~PL~~~-~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e 256 (623)
+....++.. .......+ ......+++||+.+ +.++|+|.+.. +... ++
T Consensus 266 ~d~~~d~~~~~~~~~~~g-~~~rS~L~vPL~~~~g~viGVL~l~~----------~~~~---------~~---------- 315 (691)
T 3ibj_A 266 PDAYAHPLFYRGVDDSTG-FRTRNILCFPIKNENQEVIGVAELVN----------KING---------PW---------- 315 (691)
T ss_dssp SCSTTSTTC------CCS-CCCCCEEEEECCCSSSCCCEEEEEEE----------ESSS---------SS----------
T ss_pred cCcccCccccchhhcccC-CeeeeEEEEeEECCCCCEEEEEEEEE----------CCCC---------CC----------
Confidence 222222210 00001111 22457899999999 89999999983 1100 12
Q ss_pred cchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHH
Q 006963 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLS 324 (623)
Q Consensus 257 ~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l~q~~~~lqq~~~q~~e~la~lsHELRtPLt 324 (623)
|++++...++.+|.++++|..-.+..+.+++...++......++++.+....
T Consensus 316 ----------------f~~~d~~ll~~lA~~~aiAIena~l~~~l~~~~~~~~~~~e~l~~~~~~~~~ 367 (691)
T 3ibj_A 316 ----------------FSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMMMYHMKVSDD 367 (691)
T ss_dssp ----------------CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHH
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 4445566777999999998866555555555555444444445554444433
No 86
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=94.25 E-value=0.034 Score=55.89 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhc
Q 006963 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSL 545 (623)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iF 545 (623)
.+|..||+||..+.. .+..+.|.+. .+.+.-.|.|.|||.||+.+++...|
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~-~d~~~~~I~I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLI-PNKQDRTLTIVDTGIGMTKADLINNL 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEE-EETTTTEEEEEECSCCCCHHHHHTHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEE-EcCCceEEEEecCCCCcCHHHHHHHH
Confidence 456677777776531 1234455544 22345679999999999999876544
No 87
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=94.12 E-value=0.026 Score=56.63 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=35.3
Q ss_pred eEEEEEEEecCCeEEEEEeeCCCCCChhhHhhhcCCC-cccccc------cccccCCCCCCcchhHHHHHHH
Q 006963 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMTQMHSLTPF-GSELFS------ENMVEDNMTWNFVAGLTVAREL 576 (623)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~~iFepF-~~~~~s------~~~~~~~~~~GtGLGLaIvr~i 576 (623)
.|.|... ...-.|+|.|||+||+.+++..-+... +++... .........+-+|+|++-|-.+
T Consensus 120 ~I~I~~D---k~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV 188 (272)
T 3ied_A 120 IIKIKPD---KEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV 188 (272)
T ss_dssp CEEEEEE---TTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT
T ss_pred EEEEEEe---CCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc
Confidence 4555443 233469999999999999887655432 221100 0001112335689998876543
No 88
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=93.83 E-value=0.78 Score=51.88 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=28.6
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
..|.|+.++|+..++.+.+.+|.| ++++|-=.
T Consensus 142 ~~s~~l~~i~~~~v~evr~l~~~D-Rv~iy~F~ 173 (635)
T 4eho_A 142 RTAGSLRALCDDTALLFQQCTGYD-RVMVYRFD 173 (635)
T ss_dssp HHCCSHHHHHHHHHHHHHHHSCCS-EEEEEEEC
T ss_pred HhhCCHHHHHHHHHHHHHHHhCCC-eEEEEEEC
Confidence 447889999999999999999999 99999765
No 89
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=93.69 E-value=0.57 Score=48.09 Aligned_cols=124 Identities=17% Similarity=0.147 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCC---CCCcCeee-----ecccc------c-cC
Q 006963 115 PDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPG---VNATDIVV-----LVGNF------N-MP 179 (623)
Q Consensus 115 ~df~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~---~~~~~~~~-----l~g~~------~-~~ 179 (623)
.|+.++.+..++.+.+.++.+ .+++|+... + +|...+.+++ ........ ++|.+ . ++
T Consensus 195 ~~~~~~l~~i~~~~~~~~~~~-~~~i~l~d~-----~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 266 (368)
T 1mc0_A 195 DDVSVLLQEIITEARNLSNAE-ICSVFLLDQ-----N--ELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIP 266 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTEE-EEEEEEECS-----S--SEEEEEETTEECCCSTTCCEECTTSHHHHHHHHHCCCEEES
T ss_pred cCHHHHHHHHHHHHHHHhccc-EEEEEEEeC-----C--ceEEEEeccccccccccceeecCCCceeeeehhhCCEEEec
Confidence 689999999999999999433 444999872 2 3555555531 11111111 11111 1 22
Q ss_pred cchhhhhhhhhcccc---cCCCCCCeEEEeeeeC-CeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 006963 180 AGLRAAEAALSSQQV---QVVPEQRAVVFPMVKH-PFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (623)
Q Consensus 180 ~~~~~~~~~l~~~~~---~~~~~~~~lv~PL~~~-~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 255 (623)
.....+. ..... ........+++||..+ +.++|+|.+.. . .+..
T Consensus 267 d~~~~~~---~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~-----------~-----------~~~~------- 314 (368)
T 1mc0_A 267 DAYAHPL---FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVN-----------K-----------INGP------- 314 (368)
T ss_dssp CSTTCTT---CCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEE-----------E-----------TTSS-------
T ss_pred CcccCcc---cchhhhhccCCccceEEEEeeECCCCcEEEEEEEEE-----------C-----------CCCC-------
Confidence 1111111 00000 0123468999999996 99999999982 1 1100
Q ss_pred ccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 006963 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (623)
Q Consensus 256 e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~l 294 (623)
.|++++...+..++.++++|..-
T Consensus 315 ----------------~f~~~d~~ll~~la~~~a~ai~n 337 (368)
T 1mc0_A 315 ----------------WFSKFDEDLATAFSIYCGISIAH 337 (368)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 16678888999999999997743
No 90
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=93.42 E-value=0.06 Score=57.68 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhH--------hhhcCCCccc-cccccccc
Q 006963 489 EPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ--------MHSLTPFGSE-LFSENMVE 559 (623)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~--------~~iFepF~~~-~~s~~~~~ 559 (623)
...+.+|+.|-+++|+. .....|.|.+. .++ .|+|+|||.|||.+.. +-+|.....+ +.... .+
T Consensus 52 ~hlv~EivdNsiDea~a--g~~~~I~V~i~--~dg--sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~-~y 124 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALA--GHAKQIEVTLY--KDG--SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR-NY 124 (408)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCCEEEEEEC--TTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC------------
T ss_pred chhhHHHHHHHHHHhhc--CCCceEEEEEe--CCC--eEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC-ce
Confidence 33444555555555443 22368888884 333 5999999999998763 3445333322 11111 01
Q ss_pred CCCCC-CcchhHHHHHHHHH
Q 006963 560 DNMTW-NFVAGLTVARELLE 578 (623)
Q Consensus 560 ~~~~~-GtGLGLaIvr~ive 578 (623)
. .+. -.|.|++.+.-+-+
T Consensus 125 k-vSgGlhGvG~svVNALS~ 143 (408)
T 3lnu_A 125 T-FSGGLHGVGVSVVNALST 143 (408)
T ss_dssp ----------CHHHHHHTEE
T ss_pred e-ecCCccccccceehhccC
Confidence 0 111 37899999988764
No 91
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=93.25 E-value=1.1 Score=41.74 Aligned_cols=119 Identities=11% Similarity=-0.041 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCCcCeeeeccccccCcchhhhhh-hhhccccc
Q 006963 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEA-ALSSQQVQ 195 (623)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~l~g~~~~~~~~~~~~~-~l~~~~~~ 195 (623)
..++-...+...++.++.+ +.++|+..+ . -+|..++.+..... +.++.++++.....+ .....
T Consensus 29 ~~~~l~~il~~a~~~~~~d-~gsL~l~d~----~--~~l~~~aa~G~~~~------l~~lr~~~~~~~~gpr~~~~t--- 92 (160)
T 3cit_A 29 PEAMRKCVLQRACAFVAMD-HGLLLEWGA----D--NGVQTTARHGSKER------LSTLETTADPLAIGPQWLERP--- 92 (160)
T ss_dssp HHHHHHHHHHHHHHHTTCS-EEEEEECC--------CCCEEEEEESCHHH------HTTSCCCCCTTCCSCEEEECT---
T ss_pred HHHHHHHHHHHHHHHhccC-eeEEEEEcC----C--CceeeeeccCchhh------hhhhhcccccccccccccccc---
Confidence 3667777788888899778 777999773 1 25677777772111 111122111111000 11001
Q ss_pred CCCCCCeEEEee-eeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhccchhhhhhhcccC
Q 006963 196 VVPEQRAVVFPM-VKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFS 274 (623)
Q Consensus 196 ~~~~~~~lv~PL-~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~i~~~~~e~~~~~~f~ 274 (623)
.....+.+++|| ..+|.++|++.+.. + .+...|+
T Consensus 93 g~~t~svl~vPL~~~~g~~~Gvlql~N-----------~----------------------------------~~~~~f~ 127 (160)
T 3cit_A 93 GTHLPCVLLLPLRGADEGSFGTLVLAN-----------S----------------------------------VAISAPD 127 (160)
T ss_dssp TSSSCEEEEEEEECSSSSEEEEEEEEE-----------S----------------------------------SCCCCCC
T ss_pred CcccceeEEEeeecCCCcEEEEEEEec-----------c----------------------------------CCCCCCC
Confidence 112346899999 59999999999872 1 0001278
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006963 275 ADQRLNAINICRSLAMAYVMDQ 296 (623)
Q Consensus 275 ~e~r~~~~~ia~~lalA~~l~q 296 (623)
+++.+.+..++.+++.+..-.+
T Consensus 128 ~eD~e~l~lLA~~~a~aien~r 149 (160)
T 3cit_A 128 GEDIESLQLLATLLAAHLENNR 149 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998664333
No 92
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=93.04 E-value=0.075 Score=52.85 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEeeCCCCCChhhHh
Q 006963 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQM 542 (623)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~~ 542 (623)
.+|..||+||..+.. .+..+.|.+... ...-.|.|.|||+||+.+++.
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPN-PQERTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEe-CCccEEEEEeCCCCCCHHHHH
Confidence 345666666665421 223344444322 334579999999999999863
No 93
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=92.13 E-value=1.4 Score=45.62 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=28.0
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
.-|.|+.++|+..++.+++.+|.| |++||==.
T Consensus 144 r~sldl~~il~~av~evr~llg~D-RVmIYrF~ 175 (327)
T 4e04_A 144 QAAETLESACAAAAQEVREITGFD-RVMIYRFA 175 (327)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHHCCC-eEEEEEEc
Confidence 445689999999999999999999 99988765
No 94
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=91.88 E-value=2.6 Score=43.96 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=28.4
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
.-|.|+.++|+..++.+++.+|.| |+.+|==.
T Consensus 162 r~sldl~~ilq~tV~eVR~llg~D-RVmIYrF~ 193 (343)
T 3s7o_A 162 ESAPNLRALAEVATQTVRELTGFD-RVMLYKFA 193 (343)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEc
Confidence 447799999999999999999999 99988765
No 95
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=91.59 E-value=2.7 Score=38.07 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 118 QRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 118 ~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
.++.+..++.+.+.++.+ ++++|+-.
T Consensus 2 ~~il~~~~~~~~~~l~~d-r~~i~~~~ 27 (172)
T 2k2n_A 2 DQILRATVEEVRAFLGTD-RVKVYRFD 27 (172)
T ss_dssp HHHHHHHHHHHHHHHCCS-EEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCC-eEEEEEEC
Confidence 467888899999999888 88899876
No 96
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=90.74 E-value=0.55 Score=56.76 Aligned_cols=86 Identities=8% Similarity=0.043 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhc---CCCCeEEEEEEEecCCeEEEEEeeCCCCCChhhH--------hhhcCCCcccccccccc
Q 006963 490 PALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMTQ--------MHSLTPFGSELFSENMV 558 (623)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t---~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~--------~~iFepF~~~~~s~~~~ 558 (623)
.-|..++..+|+||+.-. .....|.|.+. .+++ .|+|+|||.|||-+.. +-+|.....+-.=++..
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~-~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ 134 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIH-AEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 134 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSS
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEE-CCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCC
Confidence 467777777777777732 22247888886 3334 4899999999986532 34555444431111111
Q ss_pred cCCCCCCcchhHHHHHHHHH
Q 006963 559 EDNMTWNFVAGLTVARELLE 578 (623)
Q Consensus 559 ~~~~~~GtGLGLaIvr~ive 578 (623)
+.-..+=.|.|.+.|.-+-+
T Consensus 135 ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 135 KKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp CCCCSCCSSCHHHHHHHTEE
T ss_pred CeEeccCCChhhhHHhhcCC
Confidence 11011237999999987754
No 97
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=89.62 E-value=3.8 Score=36.99 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceEEEEeecCCCCC-----cCeeeecccc------
Q 006963 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNA-----TDIVVLVGNF------ 176 (623)
Q Consensus 109 ~~~~~s~df~~l~~~ql~~~~~~~~~~a~~~-vYl~~~~~~~~~~~~l~~v~~yp~~~~-----~~~~~l~g~~------ 176 (623)
++..--.-.+.|| .++...+ +.+|. ||+-. ..+-+|.|--+|.-... .++...-+..
T Consensus 10 ~l~~vd~~~~~l~----rll~k~~--~~~w~~vy~~d-----rerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~ 78 (162)
T 3eea_A 10 GLTDVDEVIKDLS----RLLRKLV--KTRWIAVYFFD-----RERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSM 78 (162)
T ss_dssp GGCCHHHHHHHHH----HHHHHHS--CCSEEEEEEEC-----C--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHH
T ss_pred ccccHHHHHHHHH----HHHHHHh--CCceEEEEEee-----hhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHH
Confidence 4443333345555 5677777 55666 99976 22346888877765443 1111100100
Q ss_pred ------ccCcchhhhhhhhhcccccC-CCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCC
Q 006963 177 ------NMPAGLRAAEAALSSQQVQV-VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAF 249 (623)
Q Consensus 177 ------~~~~~~~~~~~~l~~~~~~~-~~~~~~lv~PL~~~~~v~G~Lv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 249 (623)
.++.. +....+..+.+.. .-.-+.+.+||..+++++|++++.. +.-.
T Consensus 79 lr~~~hll~~d--p~~s~l~tp~l~k~~~~~~ILgVPL~~g~qVIGVLFaAr-----------------------R~~R- 132 (162)
T 3eea_A 79 LRKRQHLMLTD--PGSSDLLTPKLRKLLRNLCVLAVPMVVRTQVIGAVFMAR-----------------------TRDN- 132 (162)
T ss_dssp HHHTCCEEESC--GGGCTTSCHHHHHHTTTEEEEEEEEEETTEEEEEEEEEE-----------------------ETTS-
T ss_pred HHhcCccccCC--CCcchhccHHHHHHHhhCeEEEecceeCCEEEEEEEEec-----------------------cccc-
Confidence 01111 0000122111111 2233689999999999999999983 1111
Q ss_pred CCCCccccchhccchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 006963 250 PPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (623)
Q Consensus 250 ~~~~~~e~~~i~~~~~e~~~~~~f~~e~r~~~~~ia~~lalA~~ 293 (623)
..|+.++...+..++.+.|+|..
T Consensus 133 ---------------------~~Fs~dEiALL~SLAahAAIAId 155 (162)
T 3eea_A 133 ---------------------PPFSDAETAIIRDLVSHAALVVS 155 (162)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 02788888899999999888763
No 98
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=77.69 E-value=0.46 Score=55.90 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 109 ~~~~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
..+..+.|+.++++..++.+.+.++.+ ++++|+..
T Consensus 160 ~~L~~~ldl~~ll~~il~~l~~~l~ad-~~~I~L~d 194 (878)
T 3bjc_A 160 KDISSHLDVTALCHKIFLHIHGLISAD-RYSLFLVC 194 (878)
T ss_dssp ------------------------------------
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEe
Confidence 345567889999999999999999555 55588876
No 99
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=73.11 E-value=20 Score=36.47 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceEEEEeecCCCCC---cCeeeeccccc-------cCcchhhhh
Q 006963 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA---TDIVVLVGNFN-------MPAGLRAAE 186 (623)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~vYl~~~~~~~~~~~~l~~v~~yp~~~~---~~~~~l~g~~~-------~~~~~~~~~ 186 (623)
...+++..|+++++..... .-++|.-+.+ ....+.|+|+-..... ++. ||+.+. +.....+..
T Consensus 24 l~~~a~~lL~llaq~~~l~-~Aaly~~~~~----~~~~~~p~A~iG~~~~l~~~Dp--LVr~alet~~l~~v~~~~~~~~ 96 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLR-IAGLYRVRYD----RTPEPQPLATLGEMPALDADDL--LVRTCLERGELVSVRQELLERG 96 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCS-EEEEEEBCTT----SCBCSSCSEEESSCCCCCSCCH--HHHHHHHHTSCEECCC------
T ss_pred ChHHHHHHHHHHHHhcCee-EEEEEEEECC----cccCCceeeecCCCCCCCCCCH--HHHHHHHhCCceeechhhhhcc
Confidence 5566888899999988666 6669987622 1145667776655322 111 333321 211111100
Q ss_pred hhhhcccccCCCCCCeEEEeee-eCCeEEEEEEEe
Q 006963 187 AALSSQQVQVVPEQRAVVFPMV-KHPFVVGFLVAE 220 (623)
Q Consensus 187 ~~l~~~~~~~~~~~~~lv~PL~-~~~~v~G~Lv~~ 220 (623)
. ..-.....+|+||+ .++.++|+++++
T Consensus 97 ~-------~~~~sryL~viPLld~~g~i~Gvl~V~ 124 (298)
T 4eu0_A 97 E-------QRAHSAAAVCVPLVDTDGRILALLAVE 124 (298)
T ss_dssp --------------CCEEEEEECTTSCEEEEEEEE
T ss_pred c-------cccccceEEEEEeecCCCcEEEEEEEe
Confidence 0 00134568999999 999999999999
No 100
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=70.01 E-value=0.92 Score=53.31 Aligned_cols=32 Identities=0% Similarity=0.027 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 006963 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (623)
Q Consensus 112 ~~s~df~~l~~~ql~~~~~~~~~~a~~~vYl~~ 144 (623)
..+.++.++.+..++.+.+.++.+ .++||+..
T Consensus 345 ~~s~dl~~ll~~I~~~a~~ll~a~-~~~V~L~d 376 (878)
T 3bjc_A 345 EEQQSLEVILKKIAATIISFMQVQ-KCTIFIVD 376 (878)
T ss_dssp ---------------------------------
T ss_pred hccccHHHHHHHHHHHHHHHhCcc-eeEEEEEc
Confidence 345689999999999999999555 55599986
No 101
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=21.34 E-value=68 Score=27.75 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.6
Q ss_pred CCCeEEEeeeeCCeEEEEEEEe
Q 006963 199 EQRAVVFPMVKHPFVVGFLVAE 220 (623)
Q Consensus 199 ~~~~lv~PL~~~~~v~G~Lv~~ 220 (623)
....+++||+.+|.++|.|.+-
T Consensus 75 ~~s~ii~PI~~~g~viG~i~l~ 96 (123)
T 2w1r_A 75 MNSYTVGPIVANGDPIGAVVIF 96 (123)
T ss_dssp ESEEEEEEEEETTEEEEEEEEE
T ss_pred eeEEEEEEEEECCEEEEEEEEE
Confidence 3568999999999999999877
Done!