RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006964
(623 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 467 bits (1203), Expect = e-160
Identities = 190/541 (35%), Positives = 302/541 (55%), Gaps = 28/541 (5%)
Query: 37 MQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIR 96
++ + T D ++ F +TYG P+ F + + A+
Sbjct: 18 LKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS------FSKALN 71
Query: 97 VGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYK 156
+GI+ G +PGGHNV+ G++DA+K NP S L GF GG GL +E+T+ ++++Y+
Sbjct: 72 IGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYR 131
Query: 157 NQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKC 216
N GG+D++ + +I T E N AL K NL+ ++IIGG SNT+AA LAE F +
Sbjct: 132 NTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGE 191
Query: 217 PTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRR 276
+V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C DA+S +KY++F++LMGR
Sbjct: 192 NIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRS 251
Query: 277 ASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGL 336
ASHVALEC L++HPN+ I+ EEV A K TL ++ ++ + R+ N GV+++PEGL
Sbjct: 252 ASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGL 311
Query: 337 IESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSPWASALFEFLPPFIKKQL 386
IE IPEV +L+ E+ + + + ++LS + ++ LP FI+ +L
Sbjct: 312 IEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFEL 371
Query: 387 LLQPESDDS---AQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGS 443
+ D +S++ TEKL +++ +N K G YKG F + HFFGY+ R +
Sbjct: 372 IKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG-SFTPVDHFFGYEGRSA 430
Query: 444 LPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTV-KRWS 502
PS FD DY Y LG+ ++ GL GYM+ + NL W G P+T +M + +R+
Sbjct: 431 FPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEERYG 490
Query: 503 QNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVT 562
+ +P I A VD+ G+ ++ +N ++ L++LY PGPVQ+ G +T
Sbjct: 491 EK-------KPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEIT 543
Query: 563 L 563
Sbjct: 544 E 544
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 132 bits (332), Expect = 7e-35
Identities = 70/327 (21%), Positives = 125/327 (38%), Gaps = 29/327 (8%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 155
R+G++ G SPG + + + H + + G G GL A ++ +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVE--VYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 215
++GG + + +T E + K + GLV+IGG S A L +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKL------TE 114
Query: 216 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGR 275
VGVP T++ D+ + +GFDT I + D ++ + Y I +MGR
Sbjct: 115 HGFPCVGVPGTIDNDIP--GTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGR 171
Query: 276 RASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 335
A +AL L +++ E +D+ I ++ E+ K H +I++ EG
Sbjct: 172 HAGDIALWSGLAGGAETILIPEAD-------YDMNDVIAR-LKRGHERGKKHSIIIVAEG 223
Query: 336 LIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKK---QLLLQPES 392
+ + + + R V Q +A L + +LLL+
Sbjct: 224 VGSGVDFGRQIQEATGFETRVTVLGH---VQRGGSPTAFDRVLASRLGARAVELLLE--- 277
Query: 393 DDSAQLSQIETEKLLAH-LVEVEMNKR 418
+ I+ +L+ H + E NK
Sbjct: 278 GKGGRCVGIQNNQLVDHDIAEALANKH 304
Score = 33.5 bits (76), Expect = 0.068
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 436 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 477
G+ RG P+ FD A LG +L G G + N
Sbjct: 247 LGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQN 288
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 120 bits (303), Expect = 6e-31
Identities = 51/264 (19%), Positives = 107/264 (40%), Gaps = 19/264 (7%)
Query: 96 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTY 155
++G++ G +PG + + G+ + + ++G G GL+ + +++ + +S
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSALTEGLE--VMGIYDGYLGLYEDRMVQLDRYSVSDM 61
Query: 156 KNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAK 215
N+GG + + R A+ K +D LV+IGG S A L E
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------ 115
Query: 216 CPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGR 275
+G+P T++ D+K + +GF T + I + + S+ + + +MGR
Sbjct: 116 MGFPCIGLPGTIDNDIKG--TDYTIGFFTALSTVVEAIDRLRDTS-SSHQRISVVEVMGR 172
Query: 276 RASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG 335
+ L + V++ E F + + + ++A + K H ++ + E
Sbjct: 173 YCGDLTLAAAIAGGCEFVVVPEVE-------FS-REDLVNEIKAGIAKGKKHAIVAITEH 224
Query: 336 LIESIPEVYALLKEIHSLLRQGVP 359
+ + + + KE R V
Sbjct: 225 MCDVDELAHFIEKETGRETRATVL 248
Score = 38.5 bits (89), Expect = 0.002
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 414 EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMA 473
E+ +++ T G+ RG P +D A +G +L AG G
Sbjct: 230 ELAHFIEKET----GRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCV 285
Query: 474 TVTN 477
+ N
Sbjct: 286 GIQN 289
>d1u1ha2 c.1.22.2 (A:396-760)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 365
Score = 34.3 bits (78), Expect = 0.041
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 517 PATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA-DAKAVTLCVEDRDYM-GRI 574
+ +DM + + LL GPG D + + + + R+
Sbjct: 263 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPR--IPSSEEIADRV 320
Query: 575 KELQKYLDEVRTIVKPGCS-----QEVLKAALSVMASVTEVLSA 613
++ L++ V P C +K AL M +++ +
Sbjct: 321 NKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRS 364
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 30.0 bits (67), Expect = 0.54
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 266 YYYFIRLMGRRASHVALECTLQSHPNMVILGE------EVAASKLTLFDLTKQICDAVQA 319
+ RL+GRR ++ + P +I + EV K+ ++ ++ ++
Sbjct: 64 LFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKK 123
Query: 320 RAEQDKNHGV 329
AE V
Sbjct: 124 TAEDYLGEPV 133
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 29.9 bits (66), Expect = 0.95
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 25/96 (26%)
Query: 159 GGYDMLGRTKDQIRT------TEQVNAALTACKNL----------NLDGLVIIGGVTSNT 202
G + LGR +Q++ E+V + L + + + + S
Sbjct: 405 GNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK 464
Query: 203 DA------AYLAETFAEAKCPTKVVGV---PVTLNG 229
+ +E P+ + + P+T NG
Sbjct: 465 HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNG 500
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID
subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 27.5 bits (61), Expect = 1.9
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 341 PEVYALLKE-IHSLLRQGVPVDNISSQL-SPWASALFEFLPPFIKKQL-LLQPESDDSAQ 397
E A +KE + +LL + ++ +S+L S+ +L PF+K+ L L+ + DSA
Sbjct: 32 TETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAA 91
Query: 398 LSQ 400
Q
Sbjct: 92 FIQ 94
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 28.1 bits (62), Expect = 3.7
Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 53/215 (24%)
Query: 45 EFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGR 104
E G T P + +P + D + G +
Sbjct: 413 ETGGFMITPLPGAIELK----AGSATRPFFG---VQPALVDNEG-HPQEGATEGNLVITD 464
Query: 105 QSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDML 164
PG ++G + + + + ++ + + + G Y +
Sbjct: 465 SWPGQARTLFG--------DHERFEQTYFSTFKNMY--FSGD-----GARRDEDGYYWIT 509
Query: 165 GRTKDQIRT------TEQVNAALTACKNL----------NLDGLVIIGGVTSNTDA---- 204
GR D + T ++ +AL A + + G I VT N
Sbjct: 510 GRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP 569
Query: 205 -------AYLAETFAEAKCPTKVVGV---PVTLNG 229
++ + P + P T +G
Sbjct: 570 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 604
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 27.8 bits (61), Expect = 4.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 286 LQSHPNMVILGEEVAASKLTL 306
Q HP V + +E A +L +
Sbjct: 229 FQQHPRTVFVCDEDATLELKV 249
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
{Clostridium thermocellum [TaxId: 1515]}
Length = 642
Score = 27.5 bits (61), Expect = 5.5
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 467 GLNGYMATVTNLKNPANKWRCGAAP------ITSMMTVKRWSQNPGASSIGRPAINPATV 520
G NG++ T ++ A +WR AP I ++ +W A G+ + + V
Sbjct: 203 GPNGFLDLFTKDRSYAKQWRYTNAPDAEGRAIQAVYWANKW-----AKEQGKGSAVASVV 257
Query: 521 DMRGKAYELLR 531
K + LR
Sbjct: 258 SKAAKMGDFLR 268
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
phenylalanine-repressible {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 462
Score = 26.8 bits (59), Expect = 8.2
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 358 VPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNK 417
+P+D + S L P + L L + K QP L+ + + +
Sbjct: 7 IPIDQLPS-LPPLPTDLRTRLDAALAKPAAQQPTWPADQALAMRTVLESVPPVTVPSEIV 65
Query: 418 RLKEG---TYKGKKF 429
RL+E KG+ F
Sbjct: 66 RLQEQLAQVAKGEAF 80
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 26.7 bits (58), Expect = 9.7
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 286 LQSHPNMVILGEEVAASKLTL 306
LQ HP +++ +E + +L +
Sbjct: 229 LQLHPKAIMVCDEPSTMELKV 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,284,592
Number of extensions: 107621
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 16
Length of query: 623
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 532
Effective length of database: 1,158,166
Effective search space: 616144312
Effective search space used: 616144312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)