Query 006965
Match_columns 623
No_of_seqs 408 out of 3158
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:38:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 7E-81 2.4E-85 751.6 24.0 544 17-623 301-871 (1304)
2 1ry2_A Acetyl-coenzyme A synth 100.0 5.5E-73 1.9E-77 637.8 48.3 495 112-623 19-536 (663)
3 1pg4_A Acetyl-COA synthetase; 100.0 7.6E-73 2.6E-77 636.3 46.1 485 118-623 23-527 (652)
4 4dg8_A PA1221; ANL superfamily 100.0 1.2E-69 4E-74 605.6 37.3 393 179-623 29-429 (620)
5 3etc_A AMP-binding protein; ad 100.0 9.6E-68 3.3E-72 586.8 43.3 427 169-623 48-485 (580)
6 3g7s_A Long-chain-fatty-acid-- 100.0 1.4E-67 4.9E-72 583.0 40.4 418 179-623 21-449 (549)
7 3ni2_A 4-coumarate:COA ligase; 100.0 1.1E-66 3.7E-71 574.3 42.2 410 179-623 24-444 (536)
8 4gr5_A Non-ribosomal peptide s 100.0 9.5E-67 3.2E-71 578.8 34.1 397 178-623 76-479 (570)
9 1amu_A GRSA, gramicidin synthe 100.0 3.1E-66 1.1E-70 573.0 37.8 393 179-623 41-440 (563)
10 3rg2_A Enterobactin synthase c 100.0 7.5E-66 2.6E-70 576.7 40.5 409 179-623 29-444 (617)
11 4fuq_A Malonyl COA synthetase; 100.0 7.5E-66 2.6E-70 562.9 39.4 403 181-623 4-409 (503)
12 3tsy_A Fusion protein 4-coumar 100.0 4.3E-66 1.5E-70 608.0 38.1 469 118-623 12-491 (979)
13 3r44_A Fatty acyl COA syntheta 100.0 3E-66 1E-70 568.1 33.1 403 178-623 17-423 (517)
14 3o83_A Peptide arylation enzym 100.0 8.5E-66 2.9E-70 568.0 35.8 412 179-623 32-449 (544)
15 3fce_A D-alanine--poly(phospho 100.0 1E-65 3.5E-70 563.6 35.1 399 180-623 4-409 (512)
16 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.9E-66 1.3E-70 570.0 31.9 409 179-623 27-440 (539)
17 3e7w_A D-alanine--poly(phospho 100.0 3.4E-65 1.2E-69 559.2 37.5 397 180-623 4-408 (511)
18 3c5e_A Acyl-coenzyme A synthet 100.0 1.1E-64 3.9E-69 561.3 41.8 422 166-623 27-466 (570)
19 3rix_A Luciferase, luciferin 4 100.0 1.5E-65 5.2E-70 566.9 33.7 415 179-623 22-449 (550)
20 3l8c_A D-alanine--poly(phospho 100.0 4.2E-65 1.4E-69 560.1 36.6 399 179-623 6-413 (521)
21 1v25_A Long-chain-fatty-acid-C 100.0 3E-65 1E-69 563.3 35.3 409 179-623 20-445 (541)
22 2d1s_A Luciferase, luciferin 4 100.0 2.2E-64 7.4E-69 557.0 37.1 407 182-623 31-451 (548)
23 2v7b_A Benzoate-coenzyme A lig 100.0 4E-64 1.4E-68 553.3 37.9 412 175-623 22-439 (529)
24 3ivr_A Putative long-chain-fat 100.0 2.4E-64 8.4E-69 552.3 34.2 400 179-623 8-410 (509)
25 1t5h_X 4-chlorobenzoyl COA lig 100.0 9.9E-64 3.4E-68 546.7 36.7 396 179-623 4-412 (504)
26 3ite_A SIDN siderophore synthe 100.0 8.3E-63 2.8E-67 546.8 35.1 403 180-623 23-437 (562)
27 3kxw_A Saframycin MX1 syntheta 100.0 6.7E-63 2.3E-67 551.1 31.8 408 179-623 13-468 (590)
28 3ipl_A 2-succinylbenzoate--COA 100.0 3.9E-61 1.3E-65 526.0 36.4 402 181-623 5-408 (501)
29 3nyq_A Malonyl-COA ligase; A/B 100.0 8.5E-62 2.9E-66 530.9 29.2 383 179-623 24-416 (505)
30 3t5a_A Long-chain-fatty-acid-- 100.0 1.5E-61 5.2E-66 526.6 29.6 394 179-611 26-480 (480)
31 3gqw_A Fatty acid AMP ligase; 100.0 1.5E-60 5.1E-65 530.7 35.3 402 178-623 22-471 (576)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.1E-40 3.6E-45 347.3 18.4 225 356-623 36-260 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 1.7E-38 5.9E-43 341.2 20.3 244 353-623 88-345 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 2.9E-38 9.9E-43 338.7 20.5 244 353-623 81-341 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 3.3E-37 1.1E-41 330.6 20.2 244 353-623 86-343 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.4E-33 4.8E-38 295.5 18.7 237 353-621 87-368 (369)
37 2jgp_A Tyrocidine synthetase 3 98.6 5.2E-10 1.8E-14 121.9 -7.1 119 17-142 374-507 (520)
38 4eql_A 4-substituted benzoates 98.4 7.4E-07 2.5E-11 96.0 10.4 121 471-623 296-435 (581)
39 4b2g_A GH3-1 auxin conjugating 98.3 2.1E-06 7.3E-11 92.6 11.7 32 592-623 412-447 (609)
40 4epl_A Jasmonic acid-amido syn 98.3 3.8E-06 1.3E-10 90.2 11.6 122 471-623 301-442 (581)
41 4hvm_A Tlmii; PSI-biology, mid 98.1 5.1E-08 1.8E-12 105.3 -6.8 129 17-158 299-470 (493)
42 1l5a_A Amide synthase, VIBH; n 97.9 1.4E-07 4.7E-12 100.1 -7.6 117 17-144 278-407 (436)
43 2xhg_A Tyrocidine synthetase A 96.7 2.7E-05 9.3E-10 83.0 -7.9 116 17-142 309-454 (466)
44 2y27_A Phenylacetate-coenzyme 90.7 2.4 8.2E-05 43.9 13.3 103 189-292 87-192 (437)
45 2y4o_A Phenylacetate-coenzyme 90.1 2.7 9.2E-05 43.6 13.1 103 189-292 89-194 (443)
46 3qov_A Phenylacetate-coenzyme 89.3 2.3 7.7E-05 44.1 11.8 99 192-291 86-187 (436)
47 1q9j_A PAPA5, polyketide synth 84.3 0.046 1.6E-06 56.7 -4.8 99 27-142 297-414 (422)
48 3hgu_A EHPF; phenazine, antibi 83.6 9.8 0.00034 38.1 12.6 100 190-291 89-214 (369)
49 3rix_A Luciferase, luciferin 4 81.8 4.6 0.00016 43.2 9.7 100 356-460 34-136 (550)
50 3g7s_A Long-chain-fatty-acid-- 78.1 12 0.00042 39.8 11.6 103 355-460 32-138 (549)
51 1v25_A Long-chain-fatty-acid-C 77.4 14 0.00049 39.2 11.8 100 355-460 31-133 (541)
52 3ivr_A Putative long-chain-fat 76.6 7.9 0.00027 40.8 9.4 95 355-459 19-116 (509)
53 3c5e_A Acyl-coenzyme A synthet 74.8 16 0.00055 39.1 11.4 101 355-460 56-160 (570)
54 3ni2_A 4-coumarate:COA ligase; 74.2 10 0.00036 40.2 9.7 97 355-459 35-134 (536)
55 1t5h_X 4-chlorobenzoyl COA lig 74.2 19 0.00064 37.9 11.6 98 355-460 15-117 (504)
56 3t5a_A Long-chain-fatty-acid-- 73.7 22 0.00075 36.9 11.9 104 355-462 37-148 (480)
57 1ry2_A Acetyl-coenzyme A synth 70.7 20 0.00069 39.3 11.1 97 355-455 95-195 (663)
58 3etc_A AMP-binding protein; ad 69.7 25 0.00084 37.8 11.4 95 355-454 69-166 (580)
59 3o83_A Peptide arylation enzym 69.6 40 0.0014 35.6 13.0 99 189-291 188-290 (544)
60 1amu_A GRSA, gramicidin synthe 69.4 19 0.00066 38.4 10.4 96 355-460 52-150 (563)
61 1pg4_A Acetyl-COA synthetase; 67.9 27 0.00094 38.0 11.4 96 355-454 89-187 (652)
62 1mdb_A 2,3-dihydroxybenzoate-A 67.6 53 0.0018 34.6 13.4 100 189-292 179-282 (539)
63 3ipl_A 2-succinylbenzoate--COA 67.1 52 0.0018 34.3 13.1 100 189-292 160-261 (501)
64 4fuq_A Malonyl COA synthetase; 67.0 19 0.00065 37.8 9.6 80 376-456 28-110 (503)
65 3kxw_A Saframycin MX1 syntheta 65.7 42 0.0014 35.8 12.3 101 355-461 24-130 (590)
66 2v7b_A Benzoate-coenzyme A lig 65.0 23 0.0008 37.3 9.9 95 355-459 36-133 (529)
67 2d1s_A Luciferase, luciferin 4 64.2 24 0.00083 37.5 9.9 84 375-459 51-137 (548)
68 4gr5_A Non-ribosomal peptide s 63.6 28 0.00096 37.1 10.3 92 355-456 88-182 (570)
69 3r44_A Fatty acyl COA syntheta 59.8 33 0.0011 36.1 9.9 95 355-457 29-126 (517)
70 3tsy_A Fusion protein 4-coumar 53.9 38 0.0013 39.0 9.7 95 355-457 74-171 (979)
71 3fce_A D-alanine--poly(phospho 53.5 39 0.0013 35.4 9.1 89 355-453 14-105 (512)
72 3e7w_A D-alanine--poly(phospho 52.6 72 0.0024 33.3 11.0 101 189-292 140-244 (511)
73 3ite_A SIDN siderophore synthe 48.2 98 0.0033 32.7 11.3 97 355-454 33-134 (562)
74 3ezx_A MMCP 1, monomethylamine 47.1 81 0.0028 28.7 9.0 83 408-492 104-195 (215)
75 3l8c_A D-alanine--poly(phospho 44.9 52 0.0018 34.4 8.4 90 355-454 17-109 (521)
76 3nyq_A Malonyl-COA ligase; A/B 44.9 1.6E+02 0.0054 30.5 12.2 99 189-292 152-253 (505)
77 3gqw_A Fatty acid AMP ligase; 43.2 86 0.0029 33.1 9.9 86 374-460 47-142 (576)
78 3rg2_A Enterobactin synthase c 41.9 80 0.0027 33.9 9.5 89 356-454 39-130 (617)
79 3tbh_A O-acetyl serine sulfhyd 37.5 1.1E+02 0.0037 30.0 8.9 67 225-291 60-127 (334)
80 4dg8_A PA1221; ANL superfamily 32.8 1E+02 0.0035 33.2 8.4 89 355-453 40-131 (620)
81 4gs5_A Acyl-COA synthetase (AM 28.9 1.5E+02 0.0053 29.0 8.4 96 190-291 35-132 (358)
82 3ju7_A Putative PLP-dependent 28.3 1.4E+02 0.0047 29.7 8.0 61 226-289 69-136 (377)
83 2ayi_A Aminopeptidase T; metal 25.3 1.5E+02 0.0052 30.0 7.6 49 217-265 5-57 (408)
84 4eez_A Alcohol dehydrogenase 1 25.1 1.3E+02 0.0043 29.4 7.0 77 210-289 136-215 (348)
85 3vc3_A Beta-cyanoalnine syntha 24.8 2.4E+02 0.0081 27.7 8.8 64 227-290 77-141 (344)
86 3ijw_A Aminoglycoside N3-acety 24.7 86 0.0029 29.7 5.2 24 221-244 18-41 (268)
87 2vsq_A Surfactin synthetase su 23.0 1.9E+02 0.0067 34.2 9.1 92 355-456 477-571 (1304)
88 4e4g_A Methylmalonate-semialde 22.8 2.8E+02 0.0095 29.0 9.3 76 399-482 164-249 (521)
89 1t90_A MMSDH, probable methylm 21.9 3E+02 0.01 28.5 9.3 76 399-482 143-228 (486)
90 4h1h_A LMO1638 protein; MCCF-l 21.6 3.1E+02 0.011 26.6 8.9 63 231-293 8-89 (327)
91 1o69_A Aminotransferase; struc 21.0 4.4E+02 0.015 25.8 10.3 61 227-290 64-130 (394)
92 3ju8_A Succinylglutamic semial 20.8 3.2E+02 0.011 28.3 9.2 76 399-482 141-226 (490)
93 1z7w_A Cysteine synthase; tran 20.8 3.3E+02 0.011 26.2 8.9 64 227-290 57-121 (322)
94 2jtq_A Phage shock protein E; 20.5 1.9E+02 0.0064 21.3 5.6 44 210-260 23-66 (85)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=7e-81 Score=751.62 Aligned_cols=544 Identities=16% Similarity=0.138 Sum_probs=437.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhCC--CChhhHHHHHHhhcCCCCCCCccchhheeecccCCCC-----C--CCCCCC
Q 006965 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD-----P--PAWIPD 87 (623)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~pl~~fqv~~~~~~~-----~--~~~~~~ 87 (623)
.++++++.++..+|.++|++++++.++ +||++||++|++.++ ++|+ ||+||++... . ....++
T Consensus 301 tlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~i~~~l~------~~~l--f~~~~~~~~~~~~~~~~~~~~~~g 372 (1304)
T 2vsq_A 301 VVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQAD------QPKL--IDHIIVFENYPLQDAKNEESSENG 372 (1304)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHHHHHSSS------CSSS--CCCEEEECSSCHHHHSCCCHHHHS
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHHHHHHhC------CCcc--cceeEEEeecccccccccccccCC
Confidence 467888889999999999999998877 999999999999875 6799 9999988110 0 000000
Q ss_pred h-------hhhhhccHHHHHHHhcccccCCC-CCCCCCChHHHHHHHhhCHHHHHHHHHHhcCCccccCCcccccCCCCC
Q 006965 88 P-------EAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNG 159 (623)
Q Consensus 88 ~-------~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~f~~~tv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 159 (623)
. ...++|||++.+.. ++++...+ | +.++|++++++++.++|..+|+++. ..|+..+...++.
T Consensus 373 ~~~~~~~~~~~~~~dL~l~~~~-~~~l~~~~~y-----~~~lf~~~~i~~l~~~~~~lL~~l~----~~p~~~~~~~~~l 442 (1304)
T 2vsq_A 373 FDMVDVHVFEKSNYDLNLMASP-GDEMLIKLAY-----NENVFDEAFILRLKSQLLTAIQQLI----QNPDQPVSTINLV 442 (1304)
T ss_dssp EEEEEEEECCCCCSSEEEEEEC-SSSCEEEEEE-----ETTTSCHHHHHHHHHHHHHHHHHHH----HSTTSBGGGCCCC
T ss_pred ceeEeeecccccccCeEEEEec-CCcEEEEEEE-----CCccCCHHHHHHHHHHHHHHHHHhc----cCccccccccCCC
Confidence 0 12357777765432 45677777 8 7799999999999999999999984 3444444433332
Q ss_pred CC-CCCCCCCccCCCCcc---cHHhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCC
Q 006965 160 EN-HLSNPGGQWLPGAFV---NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKG 235 (623)
Q Consensus 160 ~~-~~~~~~~~~~~~~~~---~~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g 235 (623)
.. ++...+..|+..... ....++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++|
T Consensus 443 ~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g 514 (1304)
T 2vsq_A 443 DDREREFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKG 514 (1304)
T ss_dssp CHHHHHHHHTTTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCc
Confidence 22 112223455544321 2356788899999999999998775 99999999999999999999999999
Q ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEE
Q 006965 236 SAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIV 315 (623)
Q Consensus 236 d~Vai~~~~s~~~vva~LA~~~aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (623)
++|+|+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++. ....+.
T Consensus 515 ~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~--------~~~~~~ 586 (1304)
T 2vsq_A 515 SVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY--------TGTTLF 586 (1304)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC--------CSEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC--------CCcEEE
Confidence 999999999999999999999999999999999999999999999999999998754321111110 011111
Q ss_pred EcCCCCCcccccCCCCccHHHHHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCC
Q 006965 316 IPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI 395 (623)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l 395 (623)
+.. ...+ . .....+.....++++|||+|||||||+||||+++|+++.+. .+....+++
T Consensus 587 ~~~------------~~~~-------~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~ 644 (1304)
T 2vsq_A 587 IDD------------QTRF-------E--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAF 644 (1304)
T ss_dssp SSC------------GGGG-------G--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCC
T ss_pred ecc------------cccc-------c--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCC
Confidence 110 0000 0 00111223456899999999999999999999999999876 455567889
Q ss_pred CCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC--CCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCcc
Q 006965 396 RKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG--SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSS 473 (623)
Q Consensus 396 ~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 473 (623)
+++|+++++++++|+.+++++|.+|+.|+++++.+. ..++..+.+.|++++||++.++|++++.|.+.. ...+++
T Consensus 645 ~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~ 721 (1304)
T 2vsq_A 645 SDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKG 721 (1304)
T ss_dssp CTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCC
Confidence 999999999999999999999999999999999875 358899999999999999999999999998753 223678
Q ss_pred ceEEEeecCCCCHHHHHHHHhccCCCCeeecccccccccccccCCcc---ccCccCccCCCCCCcEEEEEcCCCCcCCCC
Q 006965 474 IRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQN 550 (623)
Q Consensus 474 Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G 550 (623)
||.+++|||++++++.+++.+.++.++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|
T Consensus 722 lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G 801 (1304)
T 2vsq_A 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801 (1304)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTT
T ss_pred ccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCC
Confidence 99999999999999999998888878999999999999865543322 123456899999999999999999999999
Q ss_pred CCceeEEEE-eCccCCCCccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 551 VPGMGELAL-SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 551 ~~giGel~i-~~~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
++ |||+| |++...| |+++|++|+++|+.+|+.+|+|||||||+|||++||+|+|+||+|||||+||+||
T Consensus 802 ~~--GEl~i~G~~v~~G--Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~ri 871 (1304)
T 2vsq_A 802 AV--GELCISGMGVSKG--YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRI 871 (1304)
T ss_dssp CC--EEEEEEETTCCCC--BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEE
T ss_pred Cc--eEEEEeccccCcc--ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEee
Confidence 97 99999 6666665 6678999999999999988999999999999999999999999999999999997
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.5e-73 Score=637.81 Aligned_cols=495 Identities=23% Similarity=0.358 Sum_probs=395.6
Q ss_pred CCCCCCChHHHHHHHhhCHHHHHHHHHHhcCCccccCCcccccCCCCCCCCCCCCCCccCCCCcccHHhhhhccccCCCC
Q 006965 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSL 191 (623)
Q Consensus 112 y~~~~~~~~~f~~~tv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p 191 (623)
+...+.+|..+.++++++++.||..+++.. +.|.++++++++..... .....+..+||+++.+|.++++|+++++++|
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~p 96 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKT-GRPSFQNNAWFLNGQLNACYNCVDRHALKTP 96 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSS-CSBCSTTCCBSTTCEECHHHHHTHHHHTTCT
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCcccc-ccCCCCCCCcCCCCCccHHHHHHHHHhccCC
Confidence 333445789999999999999999999862 47889999988754100 0001233699999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecCCCCC
Q 006965 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270 (623)
Q Consensus 192 d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpldp~~~ 270 (623)
|++|+++.++ +.+..+++||+||.++++++|+.|+ ++||++||+|+|+++|++++++++|||+++|++++|++|.++
T Consensus 97 d~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~ 174 (663)
T 1ry2_A 97 NKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174 (663)
T ss_dssp TSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSC
T ss_pred CceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 9999998543 1233469999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhc---C--CeEEEEcCCCC-CcccccCCCCccHHHHHHhhhcc
Q 006965 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---A--PLAIVIPAKGS-SFSMKLRDGDISWLDFLERVRKL 344 (623)
Q Consensus 271 ~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 344 (623)
.+++.+++++++++++|+++.....++.++....+.+.. + ..++++..... ... ........|+++......
T Consensus 175 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 252 (663)
T 1ry2_A 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYKT- 252 (663)
T ss_dssp HHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSCS-
T ss_pred HHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcCC-
Confidence 999999999999999999988776666655544443332 2 23444443211 000 011234567776653221
Q ss_pred cccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHH-HHHHhcCCCCCCEEEEcCCCcccchH-HHHHHHHHh
Q 006965 345 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLN 422 (623)
Q Consensus 345 ~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~l~~~d~~l~~~~l~~~~~~-~~~~~~L~~ 422 (623)
..++....+++++||+|||||||+||||+++|++++.... .....++++++|++++.+|++|+++. +.++.+|+.
T Consensus 253 ---~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~ 329 (663)
T 1ry2_A 253 ---YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLY 329 (663)
T ss_dssp ---CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHH
T ss_pred ---CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHh
Confidence 2233445689999999999999999999999999876654 45567899999999999999999998 678999999
Q ss_pred CCeEEEeCCC---CChhhHHHHHHHcCCcEEEechHHHHHHHhcCc--CCCCCCccceEEEeecCCCCHHHHHHHHhccC
Q 006965 423 GASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (623)
Q Consensus 423 G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~ 497 (623)
|++++++++. +++..+++.|++++||++.++|++++.|++... ....++++||.+++|||++++++++++.+.++
T Consensus 330 G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g 409 (663)
T 1ry2_A 330 GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIG 409 (663)
T ss_dssp TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999763 478899999999999999999999999988754 34567899999999999999999999998875
Q ss_pred --CCCeeecccccccccccccCCc--cccCccCccCCCCCCcEEEEEcC-CCCcCCC-CCCceeEEEEeC---ccCCCCc
Q 006965 498 --YKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQ-NVPGMGELALSP---LIFGASS 568 (623)
Q Consensus 498 --~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~Vld~-~~~~vp~-G~~giGel~i~~---~~~~~~~ 568 (623)
.++++|.||+||+++.++...+ ..+...+++|+|++|++++|+|+ +|++++. |+. |||+|.+ +++.+
T Consensus 410 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~g-- 485 (663)
T 1ry2_A 410 KNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFART-- 485 (663)
T ss_dssp CSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCE--
T ss_pred CCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcc--
Confidence 4889999999999876554433 23456789999999999999998 9999988 875 9999943 45543
Q ss_pred cccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 569 ~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|+++++.+.+.|... ..+||+|||+|++|+||+|+|+||+|||||++|+||
T Consensus 486 y~~~~~~~~~~~~~~----~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI 536 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNP----YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL 536 (663)
T ss_dssp ETTCHHHHHHHHTSS----STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCB
T ss_pred cccChHHHHHhhhcC----CCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEc
Confidence 455666665544321 123999999999999999999999999999999997
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=7.6e-73 Score=636.33 Aligned_cols=485 Identities=26% Similarity=0.397 Sum_probs=391.8
Q ss_pred ChHHHHHHHhhCHHHHHHHHHHhcCCccccCCcccccCCCCCCCCCCCCCCccCCCCcccHHhhhhccccCCCCCCeEEE
Q 006965 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (623)
Q Consensus 118 ~~~~f~~~tv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~pd~~Al~ 197 (623)
+|..+.++++++++.||..+++. +.|.++++++++.... ...+..+||+++..|.++++|+++++++||++|++
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~ 96 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFA----PGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAII 96 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECC----TTCCEEEESTTCEECHHHHHTGGGHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccc----cCCCCCEECCCCChhHHHHHHHHHhccCCCceEEE
Confidence 46888899999999999999886 5778888888764320 01335699999999999999999999999999999
Q ss_pred EeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHH
Q 006965 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (623)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpldp~~~~~~l~~~ 277 (623)
+.+. +.+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++
T Consensus 97 ~~~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~ 174 (652)
T 1pg4_A 97 WEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGC 174 (652)
T ss_dssp EECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHH
T ss_pred EEcC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Confidence 8542 12344699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecccccCCccccchhhhhhhc---C----CeEEEEcCCCCCcccccCCCCccHHHHHHhhhcccccccc
Q 006965 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---A----PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 350 (623)
Q Consensus 278 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (623)
+++++++++|+++.....++.++....+.+.+ + ..++++...+..... .......|++++..... ..+
T Consensus 175 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~ 249 (652)
T 1pg4_A 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP----EHQ 249 (652)
T ss_dssp HHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS----CCC
T ss_pred HHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC----CCC
Confidence 99999999999987766555555444333321 1 234444332211100 11234567777654321 122
Q ss_pred cccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHH-HHHHHhcCCCCCCEEEEcCCCcccchH-HHHHHHHHhCCeEEE
Q 006965 351 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAA-ADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 428 (623)
Q Consensus 351 ~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~l~~~d~~l~~~~l~~~~~~-~~~~~~L~~G~~lvl 428 (623)
+....+++++||+|||||||+||||+++|++++... ......++++++|++++.+|++|++++ +.++.+|++|+++++
T Consensus 250 ~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 334568999999999999999999999999987665 445567899999999999999999998 678999999999999
Q ss_pred eCCC---CChhhHHHHHHHcCCcEEEechHHHHHHHhcCc--CCCCCCccceEEEeecCCCCHHHHHHHHhccC--CCCe
Q 006965 429 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKPV 501 (623)
Q Consensus 429 ~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~--~~~l 501 (623)
.++. +++..+++.|++++||++.++|++++.|++... ....++++||.+++|||++++++++++.+.++ .+++
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i 409 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPV 409 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCE
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcE
Confidence 9763 588999999999999999999999999988653 34567899999999999999999999998775 3889
Q ss_pred eecccccccccccccCCc-cccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEEeC---ccCCCCcccccccccc
Q 006965 502 IEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSP---LIFGASSTLLNANHYD 577 (623)
Q Consensus 502 ~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i~~---~~~~~~~~~~~~~~t~ 577 (623)
+|.||+||+++.++...+ ..+...+++|+|++|++++|+|++|+++|.|+. |||+|++ +++.+ |+++++.+.
T Consensus 410 ~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~g--Y~~~~e~~~ 485 (652)
T 1pg4_A 410 VDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQART--LFGDHERFE 485 (652)
T ss_dssp EEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCE--ETTCHHHHH
T ss_pred EccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhh--hcCCHHHHH
Confidence 999999999976554433 223556899999999999999999999999986 9999943 45443 444566554
Q ss_pred ccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 578 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 578 ~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+.|.. ...+||+|||+|++|+||+|+|+||+|||||++|+||
T Consensus 486 ~~~~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI 527 (652)
T 1pg4_A 486 QTYFS----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527 (652)
T ss_dssp HHHHS----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEE
T ss_pred hhhhh----cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEE
Confidence 44321 1234999999999999999999999999999999997
No 4
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.2e-69 Score=605.64 Aligned_cols=393 Identities=17% Similarity=0.117 Sum_probs=332.9
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 29 l~~~~~~~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 29 VVARFSEMAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp HHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 56778999999999999999775 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (623)
|++||||||.+|.+++.+++++++++++|++.......... ....+...
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~~~~~~~------------------- 149 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PCVPVRHL------------------- 149 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CEEEGGGC-------------------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCC------------ceeeeccC-------------------
Confidence 99999999999999999999999999999765422110000 00000000
Q ss_pred HhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHHHH
Q 006965 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (623)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~~~ 418 (623)
.. ...........++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|++++++++.
T Consensus 150 ---~~-~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 224 (620)
T 4dg8_A 150 ---PA-APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWG 224 (620)
T ss_dssp ---CC-CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHH
T ss_pred ---Cc-CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHH
Confidence 00 00111222346899999999999999999999999999887765 56788999999999999999999999999
Q ss_pred HHHhCCeEEEeCC-CCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhccC
Q 006965 419 SLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (623)
Q Consensus 419 ~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~ 497 (623)
+|+.|+++++.+. ..++..++++|+++++|++.++|++++.|++.. ..++++||.+++|||+++++..+++.+.++
T Consensus 225 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~ 301 (620)
T 4dg8_A 225 ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHP 301 (620)
T ss_dssp HHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCC
Confidence 9999999999753 468899999999999999999999999998753 235789999999999999999988888878
Q ss_pred CCCeeecccccccccccccCCc---cccCccCccCCCCCCcEEEEEcCCCCc-CCCCCCceeEEEE-eCccCCCCccccc
Q 006965 498 YKPVIEYCGGTEIGGGFITGSL---LQAQSLAAFSTPAMGCKLFILGNDGCP-IPQNVPGMGELAL-SPLIFGASSTLLN 572 (623)
Q Consensus 498 ~~~l~n~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~Vld~~~~~-vp~G~~giGel~i-~~~~~~~~~~~~~ 572 (623)
+++++|.||+||++++++.... .......++|+|++|++++|+|+++++ +|+|++ |||+| +++.+.| |+++
T Consensus 302 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~G--Y~~~ 377 (620)
T 4dg8_A 302 RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQG--YRND 377 (620)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSE--ETTC
T ss_pred CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccc--cCCC
Confidence 8999999999999976543322 122345799999999999999999998 789987 99999 6666654 6678
Q ss_pred cccccccccccccCCCc--eeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 573 ANHYDVYFSGMPSRNGQ--ILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 573 ~~~t~~~f~~~p~~~g~--~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
++.|+++|..+|. +|. +||||||+|++++||+|+|+||.|||||++|+||
T Consensus 378 p~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri 429 (620)
T 4dg8_A 378 AARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRL 429 (620)
T ss_dssp HHHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEE
T ss_pred hhhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEc
Confidence 8999999998885 343 8999999999999999999999999999999997
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.6e-68 Score=586.82 Aligned_cols=427 Identities=19% Similarity=0.222 Sum_probs=350.8
Q ss_pred ccCCCCcccHHhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH
Q 006965 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS 248 (623)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~ 248 (623)
+|......|.+.++|+++++++||++|+++.+. .+..+++||+||.++++++|++|+++|+++||+|+|+++|++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~ 124 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYARDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF 124 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHHHHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH
T ss_pred CCCCcccchHHHHHHHHHHhhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH
Confidence 566666788999999999999999999998543 13346999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcC---CeEEEEcCCCCCccc
Q 006965 249 VVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVIPAKGSSFSM 325 (623)
Q Consensus 249 vva~LA~~~aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 325 (623)
++++|||+|+|++++|++|.++.+++.+++++++++++|++.+.. .......+....+ ...+.+...
T Consensus 125 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------ 194 (580)
T 3etc_A 125 WYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD------ 194 (580)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS------
T ss_pred HHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc------
Confidence 999999999999999999999999999999999999999987421 0012222222222 233333211
Q ss_pred ccCCCCccHHHHHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcC
Q 006965 326 KLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPT 405 (623)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~ 405 (623)
...+..++.+.+.................++|+|||+|||||||.||||+++|+++++.+......+++.+++++++.+
T Consensus 195 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (580)
T 3etc_A 195 -VLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVA 273 (580)
T ss_dssp -CCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECC
T ss_pred -cccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeC
Confidence 1124556766665443211111111345789999999999999999999999999988887777778899999999999
Q ss_pred CCcccchHHH-HHHHHHhCCeEEEeC-CCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCC
Q 006965 406 NLGWMMGPWL-VYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEA 483 (623)
Q Consensus 406 ~l~~~~~~~~-~~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~ 483 (623)
+++|+.+.+. ++.++..|+++++.+ ..+++..+++.|+++++|++.++|++++.|++.. ....++++||.+++|||+
T Consensus 274 ~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~ 352 (580)
T 3etc_A 274 DSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEP 352 (580)
T ss_dssp CTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSC
T ss_pred ChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccCC
Confidence 9999999876 789999999999885 4678999999999999999999999999998863 445678999999999999
Q ss_pred CCHHHHHHHHhccCCCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEEe---
Q 006965 484 SNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS--- 560 (623)
Q Consensus 484 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i~--- 560 (623)
+++++.+++.+.++ ++++|.||+||+++.++.. +......+++|+|++|++++|+|++|+++|+|+. |||+|.
T Consensus 353 l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~~~~ 428 (580)
T 3etc_A 353 LNPEVFNRFLEFTG-IKLMEGFGQTETVVTIATF-PWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVINTME 428 (580)
T ss_dssp CCHHHHHHHHHHHS-CCCEEEECCTTSSCCEECC-TTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEECTT
T ss_pred CCHHHHHHHHHHhC-CeEecccccccccceeecC-CCCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEecCC
Confidence 99999999988764 8999999999998754433 3334567899999999999999999999999997 999994
Q ss_pred ---CccCCCCccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 561 ---PLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 561 ---~~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
++.+.+ |+++++.|++.|.. +||+|||+|++|+||+|+|+||.|||||++|+||
T Consensus 429 g~~~~~~~g--Y~~~p~~t~~~f~~-------gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I 485 (580)
T 3etc_A 429 GKPVGLFVH--YGKDPERTEETWHD-------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKV 485 (580)
T ss_dssp CCCTTCCCE--ETTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEESSSCEEETTEEE
T ss_pred CCCCeeecc--ccCCHhHHHhhcCC-------CEEecCcEEEECCCCcEEEEecCCCEEEECCEEE
Confidence 344443 66678889988852 3999999999999999999999999999999997
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.4e-67 Score=582.97 Aligned_cols=418 Identities=17% Similarity=0.167 Sum_probs=338.2
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++++||++|+++.+.....+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 100 (549)
T 3g7s_A 21 LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRV 100 (549)
T ss_dssp TTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 44678889999999999999873222233459999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (623)
|+++|||||.++.+++.+++++++++++|++.... +.............+++.. .....+.++.
T Consensus 101 G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 164 (549)
T 3g7s_A 101 AATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVM 164 (549)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHH
Confidence 99999999999999999999999999999998532 2222222222222222211 1234566665
Q ss_pred HhhhcccccccccccCCC-CCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHHH
Q 006965 339 ERVRKLKENEFAAVEQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (623)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~-~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~~ 417 (623)
..... ..+.....+ +++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++
T Consensus 165 ~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~ 240 (549)
T 3g7s_A 165 DSGSE----DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVN 240 (549)
T ss_dssp HHSCS----CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHT
T ss_pred hcCcc----ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHH
Confidence 54332 122223334 8999999999999999999999999999999998999999999999999999999987788
Q ss_pred HHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCC--CCCccceEEEeecCCCCHHHHHHHHhc
Q 006965 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDG--YDWSSIRCFGSTGEASNVDEYLWLMGR 495 (623)
Q Consensus 418 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~--~~l~~Lr~v~~gGe~l~~~~~~~~~~~ 495 (623)
.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++...... .++++||.+++||+++++++.+++.+.
T Consensus 241 ~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~ 319 (549)
T 3g7s_A 241 LMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKL 319 (549)
T ss_dssp THHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHH
Confidence 9999999999986 5789999999999999999999999999987643332 678999999999999999999998876
Q ss_pred ----cC--CCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEc-CCCCcCCCCCCceeEEEE-eCccCCCC
Q 006965 496 ----AL--YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELAL-SPLIFGAS 567 (623)
Q Consensus 496 ----~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld-~~~~~vp~G~~giGel~i-~~~~~~~~ 567 (623)
++ .++++|.||+||+++.++...........++|+|++|++++|+| ++|+++|.|+. |||+| ++..+.|
T Consensus 320 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G- 396 (549)
T 3g7s_A 320 AAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKG- 396 (549)
T ss_dssp HHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSE-
T ss_pred HHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhh-
Confidence 43 37899999999999876655554445678999999999999999 89999999997 99999 5666554
Q ss_pred ccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 568 ~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|+++++.|++.|..++ +|.+||+|||+|++|+||+|+|+||.|||||++|+||
T Consensus 397 -Y~~~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v 449 (549)
T 3g7s_A 397 -YWKREKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449 (549)
T ss_dssp -ETTCTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC-----------
T ss_pred -hCCChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEE
Confidence 6678899999996444 4778999999999999999999999999999999997
No 7
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.1e-66 Score=574.30 Aligned_cols=410 Identities=18% Similarity=0.193 Sum_probs=343.3
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|.++++++|+++|+++...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 24 l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 24 LHSYVLENLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp HHHHHTTTGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 556788899999999999986321 48999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (623)
|++++|++|.++.+++.+++++++++++|++.... .............++.++.. ..+...++++.
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 163 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELT 163 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHH
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHh
Confidence 99999999999999999999999999999987532 22222222223333333211 12345566655
Q ss_pred HhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHH----hcCCCCCCEEEEcCCCcccchHH
Q 006965 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGPW 414 (623)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~l~~~d~~l~~~~l~~~~~~~ 414 (623)
..... ..+.....++++|||+|||||||+||||+++|+++++.+.+... .+++.++|++++.+|++|++++.
T Consensus 164 ~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 164 QADEN----EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp TSCGG----GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred hcccc----ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 43322 22334567899999999999999999999999999888776543 45688999999999999999985
Q ss_pred -HHHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHH
Q 006965 415 -LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (623)
Q Consensus 415 -~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~ 493 (623)
.++.+|..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.
T Consensus 240 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 318 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVR 318 (536)
T ss_dssp HTHHHHHHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHH
Confidence 4789999999999986 47889999999999999999999999999988766677899999999999999999999999
Q ss_pred hccCCCCeeecccccccccccccCCc----cccCccCccCCCCCCcEEEEEc-CCCCcCCCCCCceeEEEE-eCccCCCC
Q 006965 494 GRALYKPVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELAL-SPLIFGAS 567 (623)
Q Consensus 494 ~~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~Vld-~~~~~vp~G~~giGel~i-~~~~~~~~ 567 (623)
+.+++++++|.||+||+++.++.... ......+++|+|++|++++|+| ++|+++|.|++ |||+| ++..+.|
T Consensus 319 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 395 (536)
T 3ni2_A 319 AKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKG- 395 (536)
T ss_dssp HHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE-
T ss_pred HHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchh-
Confidence 99888999999999999865443211 1234567899999999999999 67999999997 99999 6666654
Q ss_pred ccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 568 ~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|+++++.|++.|.. ++||+|||+|++++||+++|+||.|||||++|+||
T Consensus 396 -Y~~~p~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v 444 (536)
T 3ni2_A 396 -YLNDPEATSRTIDK------EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQV 444 (536)
T ss_dssp -ETTCHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEE
T ss_pred -hcCChhHHHhhccC------CCceEcccEEEEcCCceEEEEecccceEEECCEEE
Confidence 66678889888853 34999999999999999999999999999999997
No 8
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=9.5e-67 Score=578.82 Aligned_cols=397 Identities=18% Similarity=0.200 Sum_probs=323.9
Q ss_pred HHhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 006965 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (623)
Q Consensus 178 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~ 257 (623)
...++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 147 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLK 147 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 356789999999999999998765 999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHH
Q 006965 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (623)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (623)
+|+++||++|.++.+++.+++++++++++|++....... .....+......
T Consensus 148 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~---------------- 198 (570)
T 4gr5_A 148 AGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TGTTTLYVEDEA---------------- 198 (570)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CSSEEEECCC------------------
T ss_pred HCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------------cCCcceeeeccc----------------
Confidence 999999999999999999999999999999987532111 111111110000
Q ss_pred HHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHHH
Q 006965 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (623)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~~ 417 (623)
... ...........++++|||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++
T Consensus 199 ~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 273 (570)
T 4gr5_A 199 ASD----APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELF 273 (570)
T ss_dssp ---------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHH
T ss_pred ccc----ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHH
Confidence 000 00111223457899999999999999999999999999876654 3566889999999999999999999999
Q ss_pred HHHHhCCeEEEeCC-CCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhcc
Q 006965 418 ASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (623)
Q Consensus 418 ~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~ 496 (623)
.+|+.|+++++.+. ..++..+++.|+++++|++.++|++++.|++... .++++||.+++|||+++++..+++.+.+
T Consensus 274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 350 (570)
T 4gr5_A 274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDH 350 (570)
T ss_dssp HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhC
Confidence 99999999999864 4688899999999999999999999999987643 3478999999999999999999999888
Q ss_pred CCCCeeecccccccccccccCCcc---ccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCccccc
Q 006965 497 LYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLN 572 (623)
Q Consensus 497 ~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~ 572 (623)
++++++|.||+||+++..+..... ......++|+|++|++++|+|++++++|.|+. |||+| ++..+.| |+++
T Consensus 351 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~G--Y~~~ 426 (570)
T 4gr5_A 351 PALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHG--YVSR 426 (570)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCE--ETTC
T ss_pred CCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchh--cCCC
Confidence 889999999999998754433221 22345689999999999999999999999996 99999 7777664 6668
Q ss_pred ccccccccccccc--CCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 573 ANHYDVYFSGMPS--RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 573 ~~~t~~~f~~~p~--~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
++.|++.|..+|+ .++.+||||||+|++|+||+|+|+||+|||||++|+||
T Consensus 427 ~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v 479 (570)
T 4gr5_A 427 PALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRV 479 (570)
T ss_dssp HHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------
T ss_pred chhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEe
Confidence 8899999988876 35678999999999999999999999999999999997
No 9
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.1e-66 Score=573.03 Aligned_cols=393 Identities=18% Similarity=0.208 Sum_probs=327.6
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|.++++++||++|+++.+. ++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 41 l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 41 IHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp HHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 45678889999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcC--CeEEEEcCCCCCcccccCCCCccHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLD 336 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (623)
|++++|++|.++.+++.+++++++++++|++..... .+ .... ..+..+.. . ...
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~---------~~-~~~~~~~~~~~~~~--~---------~~~--- 168 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH---------LI-HNIQFNGQVEIFEE--D---------TIK--- 168 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH---------HH-TTSCCCSEEEECCC--S---------TTT---
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh---------hh-hhccccCceeeecc--h---------hhc---
Confidence 999999999999999999999999999999874321 11 1111 11111110 0 000
Q ss_pred HHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHH
Q 006965 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 416 (623)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~ 416 (623)
.. ..........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.+
T Consensus 169 ---~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 169 ---IR----EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---TS----CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---cc----cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 00 00111223467899999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHhCCeEEEeCCC--CChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHh
Q 006965 417 YASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (623)
Q Consensus 417 ~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~ 494 (623)
+.+|+.|+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++||+++++++.+++.+
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~ 315 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE 315 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh
Confidence 9999999999998642 4788999999999999999999999877542 3678999999999999999999876
Q ss_pred ccCCCCeeecccccccccccccCCcc--ccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCcccc
Q 006965 495 RALYKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLL 571 (623)
Q Consensus 495 ~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~ 571 (623)
. ++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|+. |||+| +++.+.| |++
T Consensus 316 ~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~G--Y~~ 388 (563)
T 1amu_A 316 K---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARG--YWK 388 (563)
T ss_dssp T---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCE--ETT
T ss_pred C---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChh--hCC
Confidence 4 6899999999998755443222 12345689999999999999999999999986 99999 6666664 666
Q ss_pred ccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 572 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 572 ~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+++.|++.|..+|+.+|++||+|||+|++|+||+|+|+||.|||||++|+||
T Consensus 389 ~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V 440 (563)
T 1amu_A 389 RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRV 440 (563)
T ss_dssp CHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEE
T ss_pred CchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEe
Confidence 8889999999888877889999999999999999999999999999999997
No 10
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7.5e-66 Score=576.72 Aligned_cols=409 Identities=16% Similarity=0.207 Sum_probs=333.3
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++ ||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 29 l~~~~~~~a~--pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 29 LTDILTRHAA--SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp TTHHHHTTTT--CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 3466787776 99999998775 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCC-eEEEEcCCCCCcccccCCCCccHHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (623)
|+++||++|.+|.+++.++++++++++++++........ ......+....+. ....+.... ....+.+.
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 168 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSG-DDFLNTFVTEHSSIRVVQLLNDS---------GEHNLQDA 168 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSS-SHHHHHHHHHSTTCCEEEEETCC---------STTBHHHH
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEeccccccccc-HHHHHHHhhcCCccceeeecccc---------cccchhhh
Confidence 999999999999999999999999999999875321000 0111222222222 222221111 12233333
Q ss_pred HHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchH--HH
Q 006965 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP--WL 415 (623)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~--~~ 415 (623)
..... .........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++ ++
T Consensus 169 ~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 244 (617)
T 3rg2_A 169 INHPA----EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPG 244 (617)
T ss_dssp HHSCC----SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hcccc----cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHH
Confidence 33221 1223344568999999999999999999999999999999999999999999999999998877665 46
Q ss_pred HHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcC--CCCCCccceEEEeecCCCCHHHHHHHH
Q 006965 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLM 493 (623)
Q Consensus 416 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~v~~gGe~l~~~~~~~~~ 493 (623)
++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++.
T Consensus 245 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 323 (617)
T 3rg2_A 245 SLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP 323 (617)
T ss_dssp HHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHH
Confidence 8999999999999764 6888999999999999999999999999875322 233689999999999999999999998
Q ss_pred hccCCCCeeecccccccccccccCCccccCccCccCCCC-CCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCcccc
Q 006965 494 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLL 571 (623)
Q Consensus 494 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~ 571 (623)
+.+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++++++|.|++ |||+| +++...| |++
T Consensus 324 ~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~G--Y~~ 398 (617)
T 3rg2_A 324 AEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRG--YYK 398 (617)
T ss_dssp HHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSC--CTT
T ss_pred HHh-CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccch--hcC
Confidence 876 48999999999998754433322223346899997 78899999999999999997 99999 5555554 667
Q ss_pred ccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 572 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 572 ~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+++.|+++|..++ ||||||+|++++||+|+|+||.|||||++|+||
T Consensus 399 ~p~~t~~~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri 444 (617)
T 3rg2_A 399 SPQHNASAFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKI 444 (617)
T ss_dssp CHHHHHHHBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEE
T ss_pred ChhhhhhccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEe
Confidence 8899999997543 999999999999999999999999999999997
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=7.5e-66 Score=562.95 Aligned_cols=403 Identities=18% Similarity=0.169 Sum_probs=333.2
Q ss_pred hhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Q 006965 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (623)
Q Consensus 181 ~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa 260 (623)
++|+++++++|+++|+.....+ .+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 4577888999999998853210 03899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHHHh
Q 006965 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 340 (623)
Q Consensus 261 ~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (623)
+++|++|.++.+++.+++++++++++|++.... +....+.......+..+... ....+.+....
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 142 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAG 142 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhc
Confidence 999999999999999999999999999987543 22223333333333332211 11112222111
Q ss_pred hhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHH-HHHHH
Q 006965 341 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVYAS 419 (623)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~-~~~~~ 419 (623)
. ....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+++++ .++.+
T Consensus 143 ~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 218 (503)
T 4fuq_A 143 A----SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218 (503)
T ss_dssp S----CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHH
T ss_pred C----CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 1 112233455789999999999999999999999999999999999999999999999999999999864 47789
Q ss_pred HHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhccCCC
Q 006965 420 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 499 (623)
Q Consensus 420 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~~~ 499 (623)
++.|+++++.+ .+++..+++.++ ++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.++ +
T Consensus 219 l~~g~~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~ 294 (503)
T 4fuq_A 219 LFARGSMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-H 294 (503)
T ss_dssp HHTTCEEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-C
T ss_pred HHhCCEEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-C
Confidence 99999999976 478999999997 8999999999999999887666677899999999999999999999988765 8
Q ss_pred CeeecccccccccccccCCccccCccCccCCCCCCcEEEEEc-CCCCcCCCCCCceeEEEE-eCccCCCCcccccccccc
Q 006965 500 PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYD 577 (623)
Q Consensus 500 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld-~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~~~~t~ 577 (623)
+++|.||+||+++.+. .........+++|+|++|++++|+| ++|+++|+|+. |||+| +++.+.| |+++++.|+
T Consensus 295 ~~~~~YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G--Y~~~~~~t~ 369 (503)
T 4fuq_A 295 AVLERYGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKG--YWRMPEKTK 369 (503)
T ss_dssp CEEECCEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCC--BTTCHHHHH
T ss_pred CccceEcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhh--hcCChhhhH
Confidence 8999999999987533 3333344567899999999999999 88999999997 99999 6666654 666888999
Q ss_pred ccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 578 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 578 ~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+.|..+ +||+|||+|++++||+++|+||.|||||++|+||
T Consensus 370 ~~f~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v 409 (503)
T 4fuq_A 370 SEFRDD------GFFITGDLGKIDERGYVHILGRGKDLVITGGFNV 409 (503)
T ss_dssp HTBCTT------SCEEEEEEEEECTTCEEEECCSSTTCEEETTEEE
T ss_pred hhhCCC------CCeEcceeEEEcCCCcEEEEecCCCEEEECCEEE
Confidence 999643 3999999999999999999999999999999997
No 12
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.3e-66 Score=607.99 Aligned_cols=469 Identities=16% Similarity=0.139 Sum_probs=337.9
Q ss_pred ChHHHHHHHhhCHHHHHHHHHHhcCCccccCCcccccCCCCCCCCCCCCCCccCCCCcccHHhhhhccccCCCCCCeEEE
Q 006965 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (623)
Q Consensus 118 ~~~~f~~~tv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~pd~~Al~ 197 (623)
+.++.++.||++|..++..+++.+......+.....-.... ..... .......++|.++++++||++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-p~~~tl~~~l~~~a~~~pd~~Al~ 81 (979)
T 3tsy_A 12 SGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSKL---------PDIYI-PNHLSLHDYIFQNISEFATKPCLI 81 (979)
T ss_dssp ---------------------------------CCCBCCSS---------CCCCC-CTTSCHHHHHTTTGGGTTTSEEEE
T ss_pred cCcccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecCC---------CCCCC-CCCCCHHHHHHHHHHhCCCCeEEE
Confidence 78999999999999999999988754433332222211110 01000 111235677889999999999999
Q ss_pred EeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHH
Q 006965 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (623)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpldp~~~~~~l~~~ 277 (623)
+...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.++.+++.++
T Consensus 82 ~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~ 155 (979)
T 3tsy_A 82 NGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155 (979)
T ss_dssp ETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHH
T ss_pred ECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHH
Confidence 86321 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHHHhhhcccccccccccCCCC
Q 006965 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVE 357 (623)
Q Consensus 278 l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (623)
+++++++++|++.... +....+.......++.++.. .......+...|.++...... .....+.....++
T Consensus 156 l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 225 (979)
T 3tsy_A 156 AKASNTKLIITEARYV------DKIKPLQNDDGVVIVCIDDN---ESVPIPEGCLRFTELTQSTTE-ASEVIDSVEISPD 225 (979)
T ss_dssp HHHHTEEEEEECSTTT------TTSHHHHHTSCCEEEECCCC---TTSCCCTTEEEGGGTSSCCSG-GGGGSCCSCCCTT
T ss_pred HHHcCCeEEEEChHHH------HHHHHHhhcCCceEEEeCCc---ccccCCcccccHHHHhhcccc-ccccCCcCCCCcc
Confidence 9999999999998543 22222322222233333211 111112233444444332211 1112233456789
Q ss_pred CeEEEEecCCCCCCceEEEeCCchHHHHHHHHHH----hcCCCCCCEEEEcCCCcccchHHH-HHHHHHhCCeEEEeCCC
Q 006965 358 AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGPWL-VYASLLNGASIALYNGS 432 (623)
Q Consensus 358 ~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~l~~~d~~l~~~~l~~~~~~~~-~~~~L~~G~~lvl~~~~ 432 (623)
++|||+|||||||+||||+++|+++++.+.+... .+++.++|++++.+|++|++++.. ++.+|..|+++++.+ .
T Consensus 226 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~ 304 (979)
T 3tsy_A 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-K 304 (979)
T ss_dssp SEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-S
T ss_pred ceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-C
Confidence 9999999999999999999999999988776643 456889999999999999999854 789999999999986 4
Q ss_pred CChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhccCCCCeeeccccccccc
Q 006965 433 PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGG 512 (623)
Q Consensus 433 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 512 (623)
.++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+++++++|.||+||+++
T Consensus 305 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~ 384 (979)
T 3tsy_A 305 FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384 (979)
T ss_dssp CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCS
T ss_pred CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhH
Confidence 78899999999999999999999999999887666778999999999999999999999999988899999999999987
Q ss_pred ccccCC----ccccCccCccCCCCCCcEEEEEc-CCCCcCCCCCCceeEEEE-eCccCCCCccccccccccccccccccC
Q 006965 513 GFITGS----LLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYDVYFSGMPSR 586 (623)
Q Consensus 513 ~~~~~~----~~~~~~~~~iG~p~~~~~~~Vld-~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~~~~t~~~f~~~p~~ 586 (623)
.++... .......+++|+|++|++++|+| ++++++|+|++ |||+| ++..+.+ |+++|+.|++.|..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~G--Y~~~p~~t~~~f~~---- 456 (979)
T 3tsy_A 385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKG--YLNNPAATAETIDK---- 456 (979)
T ss_dssp EEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSE--ETTCHHHHHHHBCT----
T ss_pred HHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCcccc--ccCChhhhhhhccC----
Confidence 544332 12234567999999999999999 66999999997 99999 5666554 66788899998853
Q ss_pred CCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 587 NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 587 ~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
++||||||+|++++||+|+|+||.|||||++|+||
T Consensus 457 --~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v 491 (979)
T 3tsy_A 457 --DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 491 (979)
T ss_dssp --TSCEEEEEEEEECTTSCEEEEEESCC---------
T ss_pred --CCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEE
Confidence 34999999999999999999999999999999997
No 13
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3e-66 Score=568.05 Aligned_cols=403 Identities=21% Similarity=0.189 Sum_probs=333.3
Q ss_pred HHhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 006965 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (623)
Q Consensus 178 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~ 257 (623)
...++|.++++++|+++|+++.+. .+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 17 ~l~~~l~~~a~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 90 (517)
T 3r44_A 17 NIGWMLRQRATVSPRLQAYVEPST------DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAK 90 (517)
T ss_dssp CHHHHHHHHHHHSTTSEEEEEGGG------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEeCCc------CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHH
Confidence 345678889999999999998653 24899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCC--eEEEEcCCCCCcccccCCCCccHH
Q 006965 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWL 335 (623)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 335 (623)
+|+++|||+|.++.+++.+++++++++++|++.... +....+...... .+..+. ....+.
T Consensus 91 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 152 (517)
T 3r44_A 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLA 152 (517)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHH
T ss_pred hCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHH
Confidence 999999999999999999999999999999987432 222222211111 000000 011233
Q ss_pred HHHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHH
Q 006965 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 415 (623)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~ 415 (623)
+...... ...+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..
T Consensus 153 ~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 153 ERLRSAA----ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHCC----CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred HHhhccC----cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 3332221 123344567899999999999999999999999999999999989999999999999999999999988
Q ss_pred HHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhc
Q 006965 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (623)
Q Consensus 416 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~ 495 (623)
++.+++.|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+.
T Consensus 229 ~~~~~~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 307 (517)
T 3r44_A 229 VIFSAMRGVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK 307 (517)
T ss_dssp HHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HHHHHhcCeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc
Confidence 666666999999986 4789999999999999999999999999988755455678999999999999999999999876
Q ss_pred cCCCCeeecccccccccccccCCcc-ccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCcccccc
Q 006965 496 ALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNA 573 (623)
Q Consensus 496 ~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~~ 573 (623)
+++++|.||+||+++..+..... .....+++|+|+++++++|+|+++++++.| . |||+| ++..+.+ |++++
T Consensus 308 --~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~G--Y~~~p 380 (517)
T 3r44_A 308 --NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKE--YWNRP 380 (517)
T ss_dssp --TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSE--ETTCH
T ss_pred --CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhh--hCCCh
Confidence 58999999999998755443332 234567999999999999999999999998 4 99999 6666654 66688
Q ss_pred ccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 574 ~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+.|++.|. ++||+|||+|++++||+|+|+||.|||||++|+||
T Consensus 381 ~~t~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v 423 (517)
T 3r44_A 381 EATRDAFD-------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423 (517)
T ss_dssp HHHHHTEE-------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEE
T ss_pred hhhHhhhc-------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEE
Confidence 88998884 24999999999999999999999999999999997
No 14
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.5e-66 Score=567.96 Aligned_cols=412 Identities=18% Similarity=0.198 Sum_probs=327.1
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++++||++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 32 l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 32 LTRILTVGVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp TTHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 34668889999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCC--eEEEEcCCCCCcccccCCCCccHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (623)
|++++|++|.++.+++.+++++++++++|++...... ........+...... .+.++... .....+.+
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 173 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ---------ATDFGLLD 173 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC---------TTSEEHHH
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC---------ccccchhh
Confidence 9999999999999999999999999999998753210 000111222222222 22222211 01223444
Q ss_pred HHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHH--
Q 006965 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-- 414 (623)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~-- 414 (623)
+...... ...+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++.
T Consensus 174 ~~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 250 (544)
T 3o83_A 174 WIETPAE---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSP 250 (544)
T ss_dssp HHHSCCS---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSS
T ss_pred hhhcccc---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchH
Confidence 4332211 11122345689999999999999999999999999999999999999999999999999999988764
Q ss_pred HHHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHh
Q 006965 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (623)
Q Consensus 415 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~ 494 (623)
.++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+
T Consensus 251 ~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 329 (544)
T 3o83_A 251 GALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPE 329 (544)
T ss_dssp HHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHH
T ss_pred HHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHH
Confidence 58899999999999864 68999999999999999999999999998875555556889999999999999999999988
Q ss_pred ccCCCCeeecccccccccccccCCccccCccCccCCCC-CCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCccccc
Q 006965 495 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLN 572 (623)
Q Consensus 495 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~ 572 (623)
.+ +++++|.||+||+++.+............++|+|+ ++++++|+|++++++|+|+. |||+| ++..+.| |+++
T Consensus 330 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G--Y~~~ 404 (544)
T 3o83_A 330 VL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCG--YYQS 404 (544)
T ss_dssp HH-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSC--CTTC
T ss_pred Hh-CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchh--hcCC
Confidence 77 48999999999998654433322223456899996 89999999999999999997 99999 6666554 6668
Q ss_pred cccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 573 ~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
++.|++.|.. ++||+|||+|++++||+|+|+||.|||||++|+||
T Consensus 405 ~~~t~~~f~~------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v 449 (544)
T 3o83_A 405 PEHNSQVFDE------DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKI 449 (544)
T ss_dssp HHHHHHHBCT------TCCEEEEEEEEECTTSCEEEEEEEC----------
T ss_pred hhhhhhhCCC------CCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEE
Confidence 8889998863 34999999999999999999999999999999997
No 15
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1e-65 Score=563.63 Aligned_cols=399 Identities=16% Similarity=0.184 Sum_probs=335.0
Q ss_pred hhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 006965 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (623)
Q Consensus 180 ~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aG 259 (623)
.++|+++++++||++|+++.+. ++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 4 LEQIEKWAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 3567888999999999998775 99999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHHH
Q 006965 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (623)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (623)
++++|++|.++.+++.+++++++++++|++....... .+.. ++. ...+.++..
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~~~--~~~-------------~~~~~~~~~ 128 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD------------LPVR--IVS-------------EDNLKDIFF 128 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CSSE--EEE-------------THHHHHHHH
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc------------cccc--eec-------------hhhhhhhcc
Confidence 9999999999999999999999999999986421100 0000 000 011222222
Q ss_pred hhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHHHHH
Q 006965 340 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419 (623)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~~~~ 419 (623)
.... ....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+
T Consensus 129 ~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 206 (512)
T 3fce_A 129 THKG--NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPS 206 (512)
T ss_dssp HTTT--CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHH
T ss_pred cccc--cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHH
Confidence 1111 11223345578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEEeCCC--CChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhccC
Q 006965 420 LLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (623)
Q Consensus 420 L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~ 497 (623)
++.|+++++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++|||++++++.+++.+.++
T Consensus 207 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred HhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCC
Confidence 9999999998643 47889999999999999999999999998877666778999999999999999999999999988
Q ss_pred CCCeeecccccccccccccCCcc----ccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCccccc
Q 006965 498 YKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLN 572 (623)
Q Consensus 498 ~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~ 572 (623)
+++++|.||+||+++.++..... ......++|+|+++++++|+|++|+++|+|+. |||+| ++..+.| |+++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G--Y~~~ 362 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVG--YLGS 362 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSC--BTTC
T ss_pred CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChh--hcCC
Confidence 89999999999998765433221 12345689999999999999999999999997 99999 6666654 6667
Q ss_pred cccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 573 ~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
++.|++.|.. .+|++||+|||+|++ +||+++|+||.||+||++|+||
T Consensus 363 ~~~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v 409 (512)
T 3fce_A 363 PELTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRM 409 (512)
T ss_dssp HHHHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEE
T ss_pred chhhhhcccc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEE
Confidence 8889988863 236789999999999 8999999999999999999986
No 16
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.9e-66 Score=570.01 Aligned_cols=409 Identities=18% Similarity=0.170 Sum_probs=332.9
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++++||++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 27 l~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 27 FGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp HHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 45678888999999999998764 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCC-eEEEEcCCCCCcccccCCCCccHHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (623)
|+++||++|.++.+++.+++++++++++|+++..... ........+....+. ..+++..... .+.++
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 166 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF-DYRSLARQVQSKLPTLKNIIVAGEAE-----------EFLPL 166 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTE-EHHHHHHHHHHHCTTCCCEEEESCCT-----------TSEEG
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccc-cHHHHHHHHHhcCCCccEEEEcCCcc-----------chhhh
Confidence 9999999999999999999999999999998753100 000111222222222 1122211100 01111
Q ss_pred HHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHH--H
Q 006965 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW--L 415 (623)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~--~ 415 (623)
.... ....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|++++. .
T Consensus 167 ~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 242 (539)
T 1mdb_A 167 EDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242 (539)
T ss_dssp GGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhcc----ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHH
Confidence 1100 001122345689999999999999999999999999999998888889999999999999999999885 5
Q ss_pred HHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhc
Q 006965 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (623)
Q Consensus 416 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~ 495 (623)
++.+|+.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.
T Consensus 243 ~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 321 (539)
T 1mdb_A 243 VLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV 321 (539)
T ss_dssp HHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHH
T ss_pred HHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHH
Confidence 899999999999976 4789999999999999999999999999987654455678999999999999999999999887
Q ss_pred cCCCCeeecccccccccccccCCccccCccCccCCCCCC-cEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCcccccc
Q 006965 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMG-CKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNA 573 (623)
Q Consensus 496 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~-~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~~ 573 (623)
++ ++++|.||+||+++.+...........+++|+|+++ .+++|+|++++++|+|+. |||+| ++..+.| |++++
T Consensus 322 ~~-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G--Y~~~~ 396 (539)
T 1mdb_A 322 FG-CTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRG--YYKAE 396 (539)
T ss_dssp TC-SEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSS--CTTCH
T ss_pred hC-CcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchh--hcCCh
Confidence 64 899999999997654332211112235689999976 589999999999999997 99999 6666654 66678
Q ss_pred ccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 574 ~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+.|++.|..+ +||+|||+|++++||+|+|+||.|||||++|+||
T Consensus 397 ~~t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v 440 (539)
T 1mdb_A 397 EHNAASFTED------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKV 440 (539)
T ss_dssp HHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEE
T ss_pred hhhhhhccCC------CCeecCceEEECCCCcEEEeccccceEEECCEEE
Confidence 8899989643 3999999999999999999999999999999997
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.4e-65 Score=559.23 Aligned_cols=397 Identities=17% Similarity=0.160 Sum_probs=338.4
Q ss_pred hhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 180 ~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
.++|+++++++|+++|+++.++ ++||+||.++++++|++|++. |+++|++|+++++|++++++++|||+++
T Consensus 4 ~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 4 LHAIQTHAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 3568888999999999998765 999999999999999999985 8899999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (623)
|++++|++|.++.+++.+++++++++++|++....... ... ....+.++++.
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~------------~~~----------------~~~~~~~~~~~ 127 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA------------VGQ----------------QIQTVSAEELL 127 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC------------CCC----------------SSCEEEHHHHH
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh------------ccc----------------ccceecHhhhh
Confidence 99999999999999999999999999999976421000 000 01223344443
Q ss_pred HhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHHHH
Q 006965 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (623)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~~~ 418 (623)
..... .........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.
T Consensus 128 ~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 128 ENEGG---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp TSCSC---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred ccccC---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 32211 111223456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEEeCCC--CChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhcc
Q 006965 419 SLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (623)
Q Consensus 419 ~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~ 496 (623)
+|..|+++++.+.. .++..+++.|+++++|++.++|++++.++.........++++|.+++|||++++++.+++.+.+
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~ 284 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERF 284 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHC
Confidence 99999999997642 4788999999999999999999999999988766667789999999999999999999999998
Q ss_pred CCCCeeecccccccccccccCCcc----ccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCcccc
Q 006965 497 LYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLL 571 (623)
Q Consensus 497 ~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~ 571 (623)
++++++|.||+||+++.++..... ......++|+|++|++++|+|++|+++|+|++ |||+| ++..+.+ |++
T Consensus 285 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G--Y~~ 360 (511)
T 3e7w_A 285 PKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRG--YLG 360 (511)
T ss_dssp TTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCC--BTT
T ss_pred CCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChh--hCC
Confidence 889999999999998765433221 12345689999999999999999999999997 99999 6666654 666
Q ss_pred ccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 572 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 572 ~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+++.|++.|... +|.+||+|||+|++ +||+++|+||.|||||++|+||
T Consensus 361 ~~~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v 408 (511)
T 3e7w_A 361 EPELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRM 408 (511)
T ss_dssp CHHHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEE
T ss_pred CcccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEe
Confidence 888899988653 36678999999999 6999999999999999999996
No 18
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.1e-64 Score=561.34 Aligned_cols=422 Identities=20% Similarity=0.244 Sum_probs=343.9
Q ss_pred CCCccCCCCcccHHhhhhccccCC-----CCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHC-CCCCCCEEE
Q 006965 166 PGGQWLPGAFVNPAKNCLSVNSKR-----SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIA 239 (623)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~a~~-----~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Va 239 (623)
....|+.....|...++|++++++ +||++|+++.+. .+..+++||+||.++++++|++|++. |+++||+|+
T Consensus 27 ~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~---~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~ 103 (570)
T 3c5e_A 27 QWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG---KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVA 103 (570)
T ss_dssp CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECS---SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEE
T ss_pred ccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcC---CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEE
Confidence 345677666778888889888877 999999998532 11235899999999999999999998 999999999
Q ss_pred EEcCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCC--eEEEEc
Q 006965 240 IDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIP 317 (623)
Q Consensus 240 i~~~~s~~~vva~LA~~~aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 317 (623)
|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.... +....+....+. .++++.
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~ 177 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVS 177 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEES
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEec
Confidence 999999999999999999999999999999999999999999999999987532 222222222332 233332
Q ss_pred CCCCCcccccCCCCccHHHHHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHH--HHHHHHHhcCC
Q 006965 318 AKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK--AAADAWCHMDI 395 (623)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~--~~~~~~~~~~l 395 (623)
... ..+...+++++..... ..+.....++++|||+|||||||.||||+++|+ ++. ..... ..+++
T Consensus 178 ~~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 178 EKS-------CDGWLNFKKLLNEAST----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SSC-------CTTSEEHHHHHHHSCS----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC
T ss_pred ccC-------ccccccHHHHhhcccc----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC
Confidence 111 1133456666554321 122234568999999999999999999999999 444 34443 66789
Q ss_pred CCCCEEEEcCCCcccchHH-HHHHHHHhCCeEEEeCC-CCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCcc
Q 006965 396 RKADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSS 473 (623)
Q Consensus 396 ~~~d~~l~~~~l~~~~~~~-~~~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 473 (623)
+++|++++.+|++|+.+++ .++.+|..|+++++.+. .+++..+++.|+++++|++.++|++++.|++.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999986 58899999999999864 568999999999999999999999999999863 34456899
Q ss_pred ceEEEeecCCCCHHHHHHHHhccCCCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEcCCCCcCCCCCCc
Q 006965 474 IRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPG 553 (623)
Q Consensus 474 Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~g 553 (623)
||.+++|||++++++.+++.+.+ +++++|.||+||+++.++.. .......+++|+|++|++++|+|++|+++|.|+.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~- 400 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE- 400 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC-
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecC-cccccCCCcccccCCCceEEEECCCCCCCCCCCC-
Confidence 99999999999999999998876 48899999999998654433 2223456799999999999999999999999997
Q ss_pred eeEEEEe------CccCCCCccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 554 MGELALS------PLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 554 iGel~i~------~~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|||+|. ++.+.| |+++++.|++.|. ++||+|||+|++|+||+|+|+||.|||||++|+||
T Consensus 401 -GEl~v~~~~~~g~~v~~G--Y~~~~~~t~~~f~-------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V 466 (570)
T 3c5e_A 401 -GDIGIRVKPIRPIGIFSG--YVDNPDKTAANIR-------GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRI 466 (570)
T ss_dssp -EEEEEECSSBCCTTCCCE--ETTCHHHHHHTEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEE
T ss_pred -CeeEEeccCCCCchhhcc--ccCChhHhhhhhc-------CCccccceeEEEcCCceEEEEecCCCEEEECCEEE
Confidence 999994 334443 5667888988885 24999999999999999999999999999999997
No 19
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.5e-65 Score=566.90 Aligned_cols=415 Identities=17% Similarity=0.142 Sum_probs=323.0
Q ss_pred HhhhhccccCCCCCCeEEE---EeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q 006965 179 AKNCLSVNSKRSLDDIVIR---WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~ 255 (623)
..++|.++++++|+++|++ +... .+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 22 l~~~l~~~a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 95 (550)
T 3rix_A 22 AGEQLHKAMKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGA 95 (550)
T ss_dssp HHHHHHHHHHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHH
Confidence 4567888889999999976 3221 148999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCC--eEEEEcCCCCCcccccCCCCcc
Q 006965 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDIS 333 (623)
Q Consensus 256 ~~aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 333 (623)
+++|++++|++|.++.+++.+++++++++++|++.... +....+....+. .++++..... ..+...
T Consensus 96 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 163 (550)
T 3rix_A 96 LFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD------YQGFQS 163 (550)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC------BTTBCB
T ss_pred HHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCcc------ccCccc
Confidence 99999999999999999999999999999999987532 222333333332 2222221111 123456
Q ss_pred HHHHHHhhhcccc--ccc-ccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHh---cCCCCCCEEEEcCCC
Q 006965 334 WLDFLERVRKLKE--NEF-AAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTNL 407 (623)
Q Consensus 334 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~l~~~d~~l~~~~l 407 (623)
+.++......... ... +.....++++|||+|||||||.||||+++|+++.+.+.+.... +++.++|++++.+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 243 (550)
T 3rix_A 164 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 243 (550)
T ss_dssp HHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechH
Confidence 6666655432111 011 1122245889999999999999999999999999888776654 578899999999999
Q ss_pred cccchHHHHHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHH
Q 006965 408 GWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVD 487 (623)
Q Consensus 408 ~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~ 487 (623)
+|+++++.++.+++.|+++++.+ .+++..+++.|+++++|++.++|++++.|++.......++++||.+++|||+++++
T Consensus 244 ~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~ 322 (550)
T 3rix_A 244 HHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 322 (550)
T ss_dssp TSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHH
Confidence 99999998899999999999986 47899999999999999999999999999988766677899999999999999999
Q ss_pred HHHHHHhccCCCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEc-CCCCcCCCCCCceeEEEE-eCccCC
Q 006965 488 EYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELAL-SPLIFG 565 (623)
Q Consensus 488 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld-~~~~~vp~G~~giGel~i-~~~~~~ 565 (623)
+.+++.+.++...++|.||+||+++.++.... .....+++|+|+++++++|+| ++++++|+|+. |||+| ++..+.
T Consensus 323 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~ 399 (550)
T 3rix_A 323 VGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMS 399 (550)
T ss_dssp HHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCS
T ss_pred HHHHHHHHcCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcch
Confidence 99999988875569999999999976544333 345668999999999999999 67999999997 99999 566655
Q ss_pred CCccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 566 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 566 ~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
| |+++++.|++.|.. ++||+|||+|++++||+++|+||.|||||++|+||
T Consensus 400 G--Y~~~~~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v 449 (550)
T 3rix_A 400 G--YVNNPEATNALIDK------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449 (550)
T ss_dssp E--ETTCHHHHHHHBCT------TSCEEEEEEEEECTTCCEEEC--------------
T ss_pred h--hcCChhhhhhhcCC------CCCeecCcEEEEeCCceEEEEecchheeEECCEEE
Confidence 4 66678889888853 34999999999999999999999999999999997
No 20
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=4.2e-65 Score=560.13 Aligned_cols=399 Identities=16% Similarity=0.131 Sum_probs=330.8
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..+.|+++++++|+++|+.+.++ ++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 6 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 6 MIDSIEQFAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp HHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 34668888999999999998775 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (623)
|++++|++|.++.+++.+++++++++++|++.......... ....+.++.
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~ 127 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIE 127 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHH
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhh
Confidence 99999999999999999999999999999987532110000 112233332
Q ss_pred HhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHh--cCCCCCCEEEEcCCCcccchHHHH
Q 006965 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNLGWMMGPWLV 416 (623)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~l~~~d~~l~~~~l~~~~~~~~~ 416 (623)
..... ...........+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..|++|+.+++.+
T Consensus 128 ~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 206 (521)
T 3l8c_A 128 SAKLA-EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206 (521)
T ss_dssp HHHHH-TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHH
T ss_pred hcccc-cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHH
Confidence 22111 111122334578999999999999999999999999999988877665 778899999999999999999999
Q ss_pred HHHHHhCCeEEEeCCC--CChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHh
Q 006965 417 YASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (623)
Q Consensus 417 ~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~ 494 (623)
+.++..|+++++.+.. .++..+++.|.++++|++.++|+++..++........++++||.+++||+++++++.+++.+
T Consensus 207 ~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~ 286 (521)
T 3l8c_A 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFE 286 (521)
T ss_dssp HHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHH
Confidence 9999999999998643 37889999999999999999999999998876666677899999999999999999999999
Q ss_pred ccCCCCeeecccccccccccccCCcc----ccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCcc
Q 006965 495 RALYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASST 569 (623)
Q Consensus 495 ~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~ 569 (623)
.+++++++|.||+||+++.++..... ......++|+|++|++++|+|++|+++|+|+. |||+| ++..+.| |
T Consensus 287 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G--Y 362 (521)
T 3l8c_A 287 RFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKG--Y 362 (521)
T ss_dssp HCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSC--B
T ss_pred HCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChh--h
Confidence 98889999999999998765433221 12345689999999999999999999999997 99999 6666654 6
Q ss_pred ccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 570 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 570 ~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+++++.|++.|... ++++||+|||+|++|+||+++|+||.||+||++|+||
T Consensus 363 ~~~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v 413 (521)
T 3l8c_A 363 LNNPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRI 413 (521)
T ss_dssp TTCHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----C
T ss_pred cCCchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEe
Confidence 67888999988643 3567999999999999999999999999999999997
No 21
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3e-65 Score=563.26 Aligned_cols=409 Identities=19% Similarity=0.189 Sum_probs=331.5
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++++||++|+++... +..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 20 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 20 LWDFLERAAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp THHHHHHHHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 34678888899999999996321 12358999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCC--eEEEEcCCCCCcccccCCCCccHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 336 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (623)
|++++|++|.++.+++.+++++++++++|++.... +....+....+. .++++.... ..+...+++
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 162 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEE 162 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHH
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHH
Confidence 99999999999999999999999999999987532 222222222222 222222111 012334554
Q ss_pred HHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH--HHhcCCCCCCEEEEcCCCcccchHH
Q 006965 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--WCHMDIRKADIVAWPTNLGWMMGPW 414 (623)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~l~~~d~~l~~~~l~~~~~~~ 414 (623)
+..... +.....+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++.
T Consensus 163 ~~~~~~-------~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 235 (541)
T 1v25_A 163 ALGEEA-------DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC 235 (541)
T ss_dssp HCCSCC-------CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT
T ss_pred HhhccC-------CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH
Confidence 432211 1123467899999999999999999999999998776652 3457889999999999999999987
Q ss_pred HHHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHh
Q 006965 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (623)
Q Consensus 415 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~ 494 (623)
.++.+++.|+++++.+..+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++ +
T Consensus 236 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~ 314 (541)
T 1v25_A 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-E 314 (541)
T ss_dssp HHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-H
T ss_pred HHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-H
Confidence 788999999999998765789999999999999999999999999987654445568999999999999999999998 5
Q ss_pred ccCCCCeeecccccccccccccCCccc----------cCccCccCCCCCCcEEEEEcCCCCcCCC-C-CCceeEEEE-eC
Q 006965 495 RALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGNDGCPIPQ-N-VPGMGELAL-SP 561 (623)
Q Consensus 495 ~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~Vld~~~~~vp~-G-~~giGel~i-~~ 561 (623)
.+ +++++|.||+||+++.++...... ....+++|+|++|++++|+|++++++|. | +. |||+| ++
T Consensus 315 ~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~--GEl~v~g~ 391 (541)
T 1v25_A 315 RM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL--GEVQLKGP 391 (541)
T ss_dssp HT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCC--EEEEEEST
T ss_pred Hh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcc--eEEEEeCc
Confidence 54 589999999999987654432210 0235789999999999999999999985 3 44 99999 66
Q ss_pred ccCCCCccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 562 LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 562 ~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
..+.| |+++++.|++.|.. ++||+|||+|++|+||+|+|+||.|||||++|+||
T Consensus 392 ~v~~G--Y~~~p~~t~~~f~~------~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v 445 (541)
T 1v25_A 392 WITGG--YYGNEEATRSALTP------DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI 445 (541)
T ss_dssp TSBSS--CBTCHHHHHTTBCT------TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEE
T ss_pred chhcc--ccCChhhhhhhccC------CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEE
Confidence 66654 66788889998863 23999999999999999999999999999999997
No 22
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.2e-64 Score=556.98 Aligned_cols=407 Identities=17% Similarity=0.134 Sum_probs=334.0
Q ss_pred hhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCe
Q 006965 182 CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYI 261 (623)
Q Consensus 182 ~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa~ 261 (623)
+|.++++++ |++|+++...+ +++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 31 ~l~~~~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 31 KYMERYAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred HHHhhhccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 566677788 99999974211 38999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcC--CeEEEEcCCCCCcccccCCCCccHHHHHH
Q 006965 262 VVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (623)
Q Consensus 262 ~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (623)
++|++|.++.+++.+++++++++++|++.... +....+....+ ..++.+..... ..+...|+++..
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 171 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKVD------YRGYQCLDTFIK 171 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSSC------BTTBCBHHHHHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCccc------ccccccHHHHHh
Confidence 99999999999999999999999999987532 22222222232 22222221100 012345777665
Q ss_pred hhhcccccccccccC------CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHh---cCCCCCCEEEEcCCCccc
Q 006965 340 RVRKLKENEFAAVEQ------PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTNLGWM 410 (623)
Q Consensus 340 ~~~~~~~~~~~~~~~------~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~l~~~d~~l~~~~l~~~ 410 (623)
..... ..+.... .+++++||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+
T Consensus 172 ~~~~~---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 248 (548)
T 2d1s_A 172 RNTPP---GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248 (548)
T ss_dssp HTSCT---TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSH
T ss_pred cCccc---cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHH
Confidence 43210 0111112 23899999999999999999999999999988887766 788999999999999999
Q ss_pred chHHH-HHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHH
Q 006965 411 MGPWL-VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (623)
Q Consensus 411 ~~~~~-~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~ 489 (623)
++++. ++.++ .|+++++.+ .+++..+++.|+++++|++.++|++++.|++.......++++||.+++|||++++++.
T Consensus 249 ~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 326 (548)
T 2d1s_A 249 FGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVG 326 (548)
T ss_dssp HHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHH
Confidence 99876 56667 999999986 4789999999999999999999999999998765555678999999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEc-CCCCcCCCCCCceeEEEE-eCccCCCC
Q 006965 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELAL-SPLIFGAS 567 (623)
Q Consensus 490 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld-~~~~~vp~G~~giGel~i-~~~~~~~~ 567 (623)
+++.+.+++++++|.||+||+++.++.. .......+++|+|+++++++|+| ++++++|+|+. |||+| ++..+.|
T Consensus 327 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 402 (548)
T 2d1s_A 327 EAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKG- 402 (548)
T ss_dssp HHHHHHTTCSCCEEEEECGGGSSEEEEC-CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE-
T ss_pred HHHHHHcCCCceeeccccccccceeeec-CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhh-
Confidence 9999988778999999999998755442 22334567999999999999999 78999999997 99999 5555554
Q ss_pred ccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 568 ~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|+++++.|++.|.. ++||+|||+|++++||+++|+||.|||||++|+||
T Consensus 403 -Y~~~~~~t~~~f~~------~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v 451 (548)
T 2d1s_A 403 -YVNNPEATKELIDE------EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451 (548)
T ss_dssp -ETTCHHHHHHHBCT------TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCB
T ss_pred -hcCChHHhhhcccC------CcEEEccCEEEEcCCCeEEEeccccceEEECCEEE
Confidence 56678889888853 34999999999999999999999999999999997
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4e-64 Score=553.29 Aligned_cols=412 Identities=21% Similarity=0.206 Sum_probs=325.6
Q ss_pred cccHHhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHH
Q 006965 175 FVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLA 254 (623)
Q Consensus 175 ~~~~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA 254 (623)
..|...++|+++++ +|+++|+++.+. ++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 92 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 45667788998888 999999998754 899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcC---CeEEEEcCCCCCcccccCCCC
Q 006965 255 IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVIPAKGSSFSMKLRDGD 331 (623)
Q Consensus 255 ~~~aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 331 (623)
|+++|+++||++|.++.+++.+++++++++++|++.... +.........+ ..++++...... ....
T Consensus 93 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 161 (529)
T 2v7b_A 93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRESE-----PRLA 161 (529)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------CC
T ss_pred HHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEecccccc-----cccc
Confidence 999999999999999999999999999999999987532 11222211111 222222211100 0012
Q ss_pred ccHHHHHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchH-HHHHHHHHHhcCCCCCCEEEEcCCCccc
Q 006965 332 ISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATP-FKAAADAWCHMDIRKADIVAWPTNLGWM 410 (623)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~l~~~d~~l~~~~l~~~ 410 (623)
..++++...... ..+.....+++++||+|||||||+||||+++|+++ .+........+++.++|++++.+|++|+
T Consensus 162 ~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 237 (529)
T 2v7b_A 162 PLFEELIDAAAP----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFA 237 (529)
T ss_dssp CBHHHHHHTSCC----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSH
T ss_pred cchhhhhccCCC----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHH
Confidence 246665542211 12223456899999999999999999999999998 5665555556788999999999999999
Q ss_pred chHHH-HHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHH
Q 006965 411 MGPWL-VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (623)
Q Consensus 411 ~~~~~-~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~ 489 (623)
++++. ++.+|..|+++++.+..+++..+++.|+++++|++.++|+++..|++..........+||.+++|||++++++.
T Consensus 238 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~ 317 (529)
T 2v7b_A 238 YGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIG 317 (529)
T ss_dssp HHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHH
Confidence 99865 67899999999988666789999999999999999999999999987653333212489999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCc
Q 006965 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASS 568 (623)
Q Consensus 490 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~ 568 (623)
+++.+.+ +++++|.||+||++..++..... ....+++|+|++|++++|+|++|+++|+|+. |||+| ++..+.+
T Consensus 318 ~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g-- 391 (529)
T 2v7b_A 318 ERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM-- 391 (529)
T ss_dssp HHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC--
T ss_pred HHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc--
Confidence 9998877 48999999999996544433222 2456799999999999999999999999997 99999 5665554
Q ss_pred cccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 569 ~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|+++++.|++.|. ++||+|||+|++++||+++|+||.|||||++|+||
T Consensus 392 Y~~~~~~t~~~f~-------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v 439 (529)
T 2v7b_A 392 YWNNREKSRATFL-------GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYV 439 (529)
T ss_dssp BTTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CB
T ss_pred cCCChHHHHHhhh-------cCCcccCceEEECCCccEEEeCccCCeEEECCEEE
Confidence 6667888888885 23999999999999999999999999999999997
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.4e-64 Score=552.30 Aligned_cols=400 Identities=16% Similarity=0.142 Sum_probs=317.6
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++++||++|+++.+. ++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 8 l~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 8 LADVYRRNAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp HHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 45678889999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (623)
|++++|++|.++.+++.+++++++++++|++.... ..........+....++.... ....+.++.
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 144 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFK 144 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGG
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHh
Confidence 99999999999999999999999999999987532 111111122222111111111 011111111
Q ss_pred HhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHHHH
Q 006965 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (623)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~~~ 418 (623)
... .....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.
T Consensus 145 ~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 221 (509)
T 3ivr_A 145 DLA---SDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221 (509)
T ss_dssp GTC---CCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hcc---CCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHH
Confidence 100 11122334557899999999999999999999999999999999999999999999999999999999988778
Q ss_pred HHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhccCC
Q 006965 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498 (623)
Q Consensus 419 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~~ 498 (623)
+++.|++.++.. .+++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ +..+++.+.+++
T Consensus 222 ~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~ 295 (509)
T 3ivr_A 222 LQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPN 295 (509)
T ss_dssp HHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTT
T ss_pred HHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCC
Confidence 777777777766 679999999999999999999999999999875 34568899999999997 778888888878
Q ss_pred CCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCcccccccccc
Q 006965 499 KPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYD 577 (623)
Q Consensus 499 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~~~~t~ 577 (623)
++++|.||+||+++.++..... ....++|+|++|++++|+|++++++|+|+. |||+| +++.+.+ |+++++.|+
T Consensus 296 ~~~~~~YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g--Y~~~~~~t~ 369 (509)
T 3ivr_A 296 ATFWATFGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKG--YWNNAAATQ 369 (509)
T ss_dssp CEEEEEEEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCE--ETTCHHHHH
T ss_pred CeEEcccCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCcccc--ccCCHHHhH
Confidence 9999999999998765443322 223469999999999999999999999997 99999 5665554 566788898
Q ss_pred ccccccccCCCceeEEecceEEEecCCcEEEEccc--CCeeecCceeC
Q 006965 578 VYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA--DDTMNLGGIKV 623 (623)
Q Consensus 578 ~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~--dd~iki~G~rI 623 (623)
+.|. ++||+|||+|++++||+++|+||. ||+||++|+||
T Consensus 370 ~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v 410 (509)
T 3ivr_A 370 HAFR-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENV 410 (509)
T ss_dssp HHTG-------GGSEEEEEEEEECTTSCEEEEEEC-------------
T ss_pred HHhh-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEE
Confidence 8885 249999999999999999999999 99999999997
No 25
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=9.9e-64 Score=546.65 Aligned_cols=396 Identities=19% Similarity=0.170 Sum_probs=320.6
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++++||++|+++...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 4 l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 4 VNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp HHHHHHHHHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 346788888999999999986211 48999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEE--ecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHH
Q 006965 259 GYIVVSIADSFASLEISARLRISKAKAIFT--QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD 336 (623)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (623)
|++++|+||.++.+++.+++++++++++|+ +.... ..+....+... ++ .+++
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~-~~----------------~~~~ 131 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAIFQSGSGAR-II----------------FLGD 131 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHHHHHCCCCE-EE----------------EGGG
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------hhhhhccccce-eE----------------Eecc
Confidence 999999999999999999999999999999 55321 11101111111 11 1111
Q ss_pred HHHhhhcc-cccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCC--CCCCEEEEcCCCcccchH
Q 006965 337 FLERVRKL-KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI--RKADIVAWPTNLGWMMGP 413 (623)
Q Consensus 337 ~~~~~~~~-~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l--~~~d~~l~~~~l~~~~~~ 413 (623)
+....... .....+.....++++|||+|||||||+||||+++|+++.+.+.+....+++ +++|++++.+|++|+.++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 211 (504)
T 1t5h_X 132 LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211 (504)
T ss_dssp TEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHH
T ss_pred hhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchH
Confidence 11110000 000111134467999999999999999999999999999999888888888 889999999999999998
Q ss_pred -HHHHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCc--CCCCCCccceEEEeecCCCCHHHHH
Q 006965 414 -WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYL 490 (623)
Q Consensus 414 -~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~v~~gGe~l~~~~~~ 490 (623)
+.++.+|+.|+++++.+. +++..+++.|+++++|++.++|++++.|++... ....++++||.+++|||++++++.+
T Consensus 212 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~ 290 (504)
T 1t5h_X 212 FAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290 (504)
T ss_dssp TTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHH
T ss_pred HHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHH
Confidence 568899999999999864 789999999999999999999999999987642 2345689999999999999999999
Q ss_pred HHHhccCCCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEcCCC---CcCCCCCCceeEEEEe-C-ccCC
Q 006965 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG---CPIPQNVPGMGELALS-P-LIFG 565 (623)
Q Consensus 491 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld~~~---~~vp~G~~giGel~i~-~-~~~~ 565 (623)
++.+.++ ++++|.||+||+++.+ . .. ....+++|+|+++++++|+|+++ +++|.|+. |||+|. + ..+.
T Consensus 291 ~~~~~~~-~~~~~~YG~TE~~~~~-~-~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~ 363 (504)
T 1t5h_X 291 TVHQHLP-GEKVNIYGTTEAMNSL-Y-MR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFV 363 (504)
T ss_dssp HHHHHCC-SEEEEEEEETTTEEEE-E-EE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCC
T ss_pred HHHHhcC-cceeeeeccccccccc-c-cc--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeec
Confidence 9998875 7899999999994322 1 11 24567899999999999999888 99999997 999995 3 3434
Q ss_pred CCccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 566 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 566 ~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
+ |+++++.|++.|. +| ||+|||+|++++||+|+|+||.|||||++|+||
T Consensus 364 G--Y~~~~~~t~~~f~-----~g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v 412 (504)
T 1t5h_X 364 G--YLNQPQATAEKLQ-----DG--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412 (504)
T ss_dssp C--BTTCHHHHHHHEE-----TT--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEE
T ss_pred e--ecCCchhhhhhhc-----CC--ccccCcEEEECCCceEEEeCcccCEEEECCEEE
Confidence 3 6667888988883 13 999999999999999999999999999999997
No 26
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=8.3e-63 Score=546.79 Aligned_cols=403 Identities=17% Similarity=0.195 Sum_probs=309.5
Q ss_pred hhhhccccCCCCCCeEEEEecc--CCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 006965 180 KNCLSVNSKRSLDDIVIRWCDE--GDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (623)
Q Consensus 180 ~~~l~~~a~~~pd~~Al~~~~~--~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~ 257 (623)
.++|+++++++||++|+++.+. +......+++||+||+++++++|+.|++.|+ +||+|+++++|++++++++|||++
T Consensus 23 ~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~ 101 (562)
T 3ite_A 23 SHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMK 101 (562)
T ss_dssp THHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHH
Confidence 4568889999999999998652 1111223699999999999999999999999 799999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHH
Q 006965 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (623)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (623)
+|+++|||+|.++.+++.+++++++++++|++........ ......++.. ....+.+.
T Consensus 102 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~ 159 (562)
T 3ite_A 102 SGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIEN 159 (562)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHH
T ss_pred hCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhh
Confidence 9999999999999999999999999999999875321110 0011111110 11222222
Q ss_pred HHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHh--------cCCCCCCEEEEcCCCcc
Q 006965 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--------MDIRKADIVAWPTNLGW 409 (623)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~l~~~d~~l~~~~l~~ 409 (623)
...... ........++++|||+|||||||.||||+++|+++.+.+.+.... +.+...+++++.++++|
T Consensus 160 ~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 160 LSTQDT----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHSCC----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred cccccc----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 222111 112234457899999999999999999999999998887765443 45788999999999999
Q ss_pred cchHHHHHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHH
Q 006965 410 MMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (623)
Q Consensus 410 ~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~ 489 (623)
+.+++.++.++..|+++++.+....+..+.+.++++++|++.++|++++.+... ..++++||.+++||+++++++.
T Consensus 236 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~ 311 (562)
T 3ite_A 236 DVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQ 311 (562)
T ss_dssp THHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHH
T ss_pred hhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHH
Confidence 999999999999999999865433456788999999999999999999887543 3457899999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEcC-CCCcCCCCCCceeEEEE-eCccCCCC
Q 006965 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELAL-SPLIFGAS 567 (623)
Q Consensus 490 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld~-~~~~vp~G~~giGel~i-~~~~~~~~ 567 (623)
+++.+.+ +++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|+|++ |||+| ++..+.+
T Consensus 312 ~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 387 (562)
T 3ite_A 312 QIWSSSD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANG- 387 (562)
T ss_dssp HHHTTCS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCE-
T ss_pred HHHhhCC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchh-
Confidence 9988754 589999999999987655544444455678999999999999994 6888999997 99999 5666554
Q ss_pred ccccccccccccccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 568 ~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|+++++.|+..|. +|++||+|||+|++|+||+|+|+||.|||||++|+||
T Consensus 388 -Y~~~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v 437 (562)
T 3ite_A 388 -YLNRPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRL 437 (562)
T ss_dssp -ESSCTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC-----------
T ss_pred -hCCCccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEE
Confidence 5567777764433 4678999999999999999999999999999999997
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6.7e-63 Score=551.12 Aligned_cols=408 Identities=14% Similarity=0.097 Sum_probs=329.7
Q ss_pred HhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~a 258 (623)
..++|+++++++||++|+++.+. +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 13 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 13 LVDVVRLRALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 45678889999999999998642 12359999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCC---HHHHHHHHHhcCceEEEEecccccCCccccchhhhh-hhcC--CeEEEEcCCCCCcccccCCCCc
Q 006965 259 GYIVVSIADSFA---SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVI-DAQA--PLAIVIPAKGSSFSMKLRDGDI 332 (623)
Q Consensus 259 Ga~~vpldp~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 332 (623)
|++++|++|.++ .+++.++++++++++++++...... ..... ...+ .....+.
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~~~--------------- 147 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK------FTADELNTNPKFLKIPAIA--------------- 147 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHH------HCC-----CCEETTEEEEE---------------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHH------HHHhhhhhcccccccceee---------------
Confidence 999999999884 5789999999999999998753210 00000 0000 0011110
Q ss_pred cHHHHHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccch
Q 006965 333 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG 412 (623)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~ 412 (623)
.+.+... ......+....++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+++
T Consensus 148 -~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g 222 (590)
T 3kxw_A 148 -LESIELN----RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMG 222 (590)
T ss_dssp -GGGCCGG----GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -chhcccc----ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchh
Confidence 1100000 01122334557899999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHhCCeEEEeCCCC---ChhhHHHHHHHcCCcEEEechHHHHHHHhcC---cCCCCCCccceEEEeecCCCC
Q 006965 413 PWL-VYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN---CIDGYDWSSIRCFGSTGEASN 485 (623)
Q Consensus 413 ~~~-~~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~---~~~~~~l~~Lr~v~~gGe~l~ 485 (623)
++. ++.+++.|+++++.+... ++..+++.|+++++|++.++|+++..+++.. .....++++||.+++|||+++
T Consensus 223 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~ 302 (590)
T 3kxw_A 223 LIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302 (590)
T ss_dssp HHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCC
T ss_pred hHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCC
Confidence 977 889999999999976422 7889999999999999999999999988752 234567899999999999999
Q ss_pred HHHHHHHHhccC-----CCCeeecccccccccccccCCcc--------------------------ccCccCccCCCCCC
Q 006965 486 VDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLL--------------------------QAQSLAAFSTPAMG 534 (623)
Q Consensus 486 ~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~ 534 (623)
+++.+++.+.++ +.+++|.||+||+++.++..... ......++|+|+++
T Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 382 (590)
T 3kxw_A 303 EETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE 382 (590)
T ss_dssp HHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC
Confidence 999999988763 35799999999999865543211 11234689999998
Q ss_pred cEEEEEcCC-CCcCCCCCCceeEEEE-eCccCCCCccccccccccccccccccC--CCceeEEecceEEEecCCcEEEEc
Q 006965 535 CKLFILGND-GCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYDVYFSGMPSR--NGQILRRHGDVFERTSGGYYRAHG 610 (623)
Q Consensus 535 ~~~~Vld~~-~~~vp~G~~giGel~i-~~~~~~~~~~~~~~~~t~~~f~~~p~~--~g~~~yrTGDlg~~~~dG~l~~~G 610 (623)
++|+|++ ++++|+|++ |||+| ++..+.| |+++++.|++.|..++.. .|.+||+|||+|+++ ||+|+|+|
T Consensus 383 --v~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G--Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~G 455 (590)
T 3kxw_A 383 --VKIIDPDTLIPCDFDQV--GEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTG 455 (590)
T ss_dssp --EEEECTTTCCBCCTTBC--EEEEEESTTSCCC--BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEE
T ss_pred --eEEEcCCCCcCCCCCCE--EEEEEeCCccccc--ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEc
Confidence 8889976 899999997 99999 6666664 667889999999876553 355699999999999 99999999
Q ss_pred ccCCeeecCceeC
Q 006965 611 RADDTMNLGGIKV 623 (623)
Q Consensus 611 R~dd~iki~G~rI 623 (623)
|.|||||++|+||
T Consensus 456 R~dd~Ik~~G~~v 468 (590)
T 3kxw_A 456 RIKDLIIIYGKNH 468 (590)
T ss_dssp ESSCHHHHHHHTT
T ss_pred CccceEEECCEec
Confidence 9999999999997
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.9e-61 Score=526.00 Aligned_cols=402 Identities=17% Similarity=0.174 Sum_probs=314.0
Q ss_pred hhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Q 006965 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (623)
Q Consensus 181 ~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa 260 (623)
++|.++++++||++|+++.++ ++||+||.++++++|++|+++ +||+|+|+++|++++++++|||+++|+
T Consensus 5 ~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Ga 73 (501)
T 3ipl_A 5 FWLYKQAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANI 73 (501)
T ss_dssp CHHHHHHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 467888899999999998765 999999999999999999987 899999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHHHHh
Q 006965 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 340 (623)
Q Consensus 261 ~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (623)
+++|++|.++.+++.+++++++++++|++...............+. ........................+.....
T Consensus 74 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (501)
T 3ipl_A 74 EIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIE----FAGRDITTNGLLDNTMGIQYDTSNETVVPK 149 (501)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC------------------------------------
T ss_pred EEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccce----eeeeecccccccccccccccccchhhcccc
Confidence 9999999999999999999999999999876432221110000000 000000000000000000000000111100
Q ss_pred hhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHHHHHH
Q 006965 341 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 420 (623)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L 420 (623)
. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.++
T Consensus 150 ~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 150 E---SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp C---CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred C---CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 0 0011122345789999999999999999999999999999999998999999999999999999999998899999
Q ss_pred HhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhccCCCC
Q 006965 421 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 500 (623)
Q Consensus 421 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~~~~ 500 (623)
+.|+++++.+ .+++..+++.|+++++|++.++|++++.|++...... .+||.+++|||++++++.+++.+. +++
T Consensus 227 ~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~ 300 (501)
T 3ipl_A 227 IEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLP 300 (501)
T ss_dssp HHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCC
T ss_pred HcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCC
Confidence 9999999986 4789999999999999999999999999998754332 289999999999999999988863 589
Q ss_pred eeecccccccccccccCCcc-ccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCccccccccccc
Q 006965 501 VIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYDV 578 (623)
Q Consensus 501 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~~~~t~~ 578 (623)
++|.||+||+++.++..... ......++|+|++|++++|+|++ +|.. |||+| ++..+.| |+++++.|+.
T Consensus 301 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~--GEl~v~g~~~~~g--Y~~~~~~t~~ 371 (501)
T 3ipl_A 301 IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGH--GELMIKGANVMNG--YLYPTDLTGT 371 (501)
T ss_dssp EEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCC--EEEEEESTTSCSC--CSBSTTCCCS
T ss_pred EeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCc--cEEEEeccchhhh--hCcChhhcch
Confidence 99999999998754443332 22356789999999999999976 3444 99999 5665554 5566777766
Q ss_pred cccccccCCCceeEEecceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 579 ~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|. ++||+|||+|++++||+++|+||.|||||++|+||
T Consensus 372 -~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v 408 (501)
T 3ipl_A 372 -FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENI 408 (501)
T ss_dssp -EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEE
T ss_pred -hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEE
Confidence 42 24999999999999999999999999999999986
No 29
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=8.5e-62 Score=530.91 Aligned_cols=383 Identities=20% Similarity=0.189 Sum_probs=309.7
Q ss_pred HhhhhccccCCCCC-CeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 006965 179 AKNCLSVNSKRSLD-DIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (623)
Q Consensus 179 ~~~~l~~~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~ 257 (623)
..+.|.++++++|+ ++|+++.+. ++||+||.++++++|++|+ .|++|+++++|++++++++|||++
T Consensus 24 l~~~l~~~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 24 LFPALSPAPTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp CCTTTSSCCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 34557777888887 999999775 9999999999999998875 388999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCCCccHHHH
Q 006965 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (623)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (623)
+|+++|||||.+|.+++.+++++++++++|++.... ... ... ......+...
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~---~~~--~~~~~~~~~~------------------ 142 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPP---ALG--ALERVDVDVR------------------ 142 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCG---GGT--TSEEEECCTT------------------
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cch---hhc--cccccccccc------------------
Confidence 999999999999999999999999999999986421 000 000 0011111100
Q ss_pred HHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHH-HH
Q 006965 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LV 416 (623)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~-~~ 416 (623)
.....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..+.. .+
T Consensus 143 -------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 215 (505)
T 3nyq_A 143 -------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215 (505)
T ss_dssp -------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTT
T ss_pred -------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHH
Confidence 0001122344679999999999999999999999999999999999999999999999999999998874 68
Q ss_pred HHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcC---CCCCCccceEEEeecCCCCHHHHHHHH
Q 006965 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI---DGYDWSSIRCFGSTGEASNVDEYLWLM 493 (623)
Q Consensus 417 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~---~~~~l~~Lr~v~~gGe~l~~~~~~~~~ 493 (623)
+.+|..|+++++.+ .+++..+++.+ ++++|++.++|+++..|++.... ....++++|.+++||+++++++.+++.
T Consensus 216 ~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~ 293 (505)
T 3nyq_A 216 LGPLRRGGSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIA 293 (505)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHH
T ss_pred HHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHH
Confidence 99999999999875 47888899999 88999999999999999874221 123467899999999999999999998
Q ss_pred hccCCCCeeecccccccccccccCCccccCccCccCCCCCCcEEEEEcCCCCcCCC---CCCceeEEEE-eCccCCCCcc
Q 006965 494 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ---NVPGMGELAL-SPLIFGASST 569 (623)
Q Consensus 494 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld~~~~~vp~---G~~giGel~i-~~~~~~~~~~ 569 (623)
+.+ +++++|.||+||+++.+.. ........+++|+|++|++++|+|++|++++. |++ |||+| ++..+.+ |
T Consensus 294 ~~~-~~~~~~~YG~TE~~~~~~~-~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~G--Y 367 (505)
T 3nyq_A 294 AAT-GRRVIERYGMTETLMNTSV-RADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTE--Y 367 (505)
T ss_dssp HHH-SCCCEEEEEETTTEEEEEC-CTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCE--E
T ss_pred Hhc-CCeeecccchhhccccccc-CCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhh--h
Confidence 776 4899999999999875443 33334556799999999999999999999886 775 99999 5555554 6
Q ss_pred ccccccccccccccccCCCceeEEecceEEEecCCcEEEEccc-CCeeecCceeC
Q 006965 570 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKV 623 (623)
Q Consensus 570 ~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~GR~-dd~iki~G~rI 623 (623)
+++++.|++.|..+ +||+|||+|++++||+|+|+||+ |+|||++|+||
T Consensus 368 ~~~~~~t~~~f~~~------g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v 416 (505)
T 3nyq_A 368 LNRPDATAAAFTED------GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416 (505)
T ss_dssp TTCHHHHHHTBCTT------SCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEE
T ss_pred CCChhHhhhhhcCC------CCCccCCeEEECCCccEEEeCCccCceEEeCCEEE
Confidence 66788999999743 39999999999999999999997 69999999997
No 30
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.5e-61 Score=526.55 Aligned_cols=394 Identities=17% Similarity=0.129 Sum_probs=311.2
Q ss_pred HhhhhccccCCCCCCeEEEEeccC-CCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 006965 179 AKNCLSVNSKRSLDDIVIRWCDEG-DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (623)
Q Consensus 179 ~~~~l~~~a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~ 257 (623)
..++|.++++++||++|+++.+.. ...+..+++||+||.++++++|++|+++|+ +||+|+|+++|++++++++|||++
T Consensus 26 l~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~ 104 (480)
T 3t5a_A 26 LPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQ 104 (480)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHH
Confidence 456788899999999999987621 112334699999999999999999999996 999999999999999999999999
Q ss_pred cCCeEEecCC---CCCHHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCC-------eEEEEcCCCCCccccc
Q 006965 258 AGYIVVSIAD---SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-------LAIVIPAKGSSFSMKL 327 (623)
Q Consensus 258 aGa~~vpldp---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 327 (623)
+|+++|||++ .++.+++.+++++++++++|++.... ..+.+.... .++.+.....
T Consensus 105 ~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~------ 169 (480)
T 3t5a_A 105 AGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIEVDLLDL------ 169 (480)
T ss_dssp TTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEEGGGSCT------
T ss_pred hCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeEeccccc------
Confidence 9999999999 88899999999999999999987532 111111110 1111110000
Q ss_pred CCCCccHHHHHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCC------CCEE
Q 006965 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK------ADIV 401 (623)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~------~d~~ 401 (623)
. .....+.....++++|||+|||||||+||||+++|+++++.+.+....+++.+ +|++
T Consensus 170 ------------~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 170 ------------D----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL 233 (480)
T ss_dssp ------------T----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEE
T ss_pred ------------c----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeE
Confidence 0 01112233456899999999999999999999999999999998888888887 9999
Q ss_pred EEcCCCcccchH-HHHHHHHHhCCeEEEeCCC---CChhhHHHHHHHcCCcEEEechHHHHHHHhc----CcCCCCCCcc
Q 006965 402 AWPTNLGWMMGP-WLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKST----NCIDGYDWSS 473 (623)
Q Consensus 402 l~~~~l~~~~~~-~~~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~~~~~~~l~~ 473 (623)
++.+|++|++++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +.++|+++..++.. ......++++
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~ 312 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGN 312 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTT
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhh
Confidence 999999999996 5689999999999998643 3788999999999999 88999988888753 2334567899
Q ss_pred ceEEEeecCCCCHHHHHHHHhccC-----CCCeeecccccccccccccCCccc------------------------cCc
Q 006965 474 IRCFGSTGEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQ------------------------AQS 524 (623)
Q Consensus 474 Lr~v~~gGe~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~ 524 (623)
||.+++|||++++++.+++.+.++ +++++|.||+||+++.++...... ...
T Consensus 313 lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 392 (480)
T 3t5a_A 313 ILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATS 392 (480)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEE
T ss_pred hheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcce
Confidence 999999999999999999998873 457999999999998655543321 123
Q ss_pred cCccCCCCCCcEEEEEcCC-CCcCCCCCCceeEEEE-eCccCCCCcccccccccccccccccc-----CCCceeEEecce
Q 006965 525 LAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYDVYFSGMPS-----RNGQILRRHGDV 597 (623)
Q Consensus 525 ~~~iG~p~~~~~~~Vld~~-~~~vp~G~~giGel~i-~~~~~~~~~~~~~~~~t~~~f~~~p~-----~~g~~~yrTGDl 597 (623)
..++|+|++ ++++|+|++ |+++|.|++ |||+| ++..+.| |+++++.|++.|..++. .++++||||||+
T Consensus 393 ~~~~G~p~~-~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDl 467 (480)
T 3t5a_A 393 LISYMLPRS-PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANG--YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS 467 (480)
T ss_dssp EECEECCSS-SEEEEEETTTTEECCTTBC--EEEEEESTTSCCC--BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEE
T ss_pred eeecCcccC-CEEEEEcCCCCcCCCCCCE--EEEEEeCCccccc--cccCcchhHHHHhhhhccccCCCCCCCeeeccce
Confidence 458999999 999999976 799999997 99999 6666664 66788999999964332 235679999999
Q ss_pred EEEecCCcEEEEcc
Q 006965 598 FERTSGGYYRAHGR 611 (623)
Q Consensus 598 g~~~~dG~l~~~GR 611 (623)
|+++ ||+|+|+||
T Consensus 468 g~~d-dG~l~~~GR 480 (480)
T 3t5a_A 468 GFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEE-TTEEEECC-
T ss_pred eeEE-CCEEEEeCC
Confidence 9997 999999998
No 31
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.5e-60 Score=530.72 Aligned_cols=402 Identities=16% Similarity=0.146 Sum_probs=321.0
Q ss_pred HHhhhhccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 006965 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (623)
Q Consensus 178 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~ 257 (623)
...++|+++++++|+.+++.... +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 22 tl~~~l~~~a~~~p~~~~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (576)
T 3gqw_A 22 TLVDALDYAALSSAGMNFYDRRC-----QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQY 96 (576)
T ss_dssp SHHHHHHHHTTSSCEEEEECTTS-----CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhCCCCeEEeCCCC-----CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 35577888999999988875321 1225999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCC-------HHHHHHHHHhcCceEEEEecccccCCccccchhhhhhhcCCeEEEEcCCCCCcccccCCC
Q 006965 258 AGYIVVSIADSFA-------SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330 (623)
Q Consensus 258 aGa~~vpldp~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (623)
+|++++|+++.++ .+++.+++++++++++|++.+.. +.........+....+.
T Consensus 97 ~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~-------------- 156 (576)
T 3gqw_A 97 AGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPELHVLS-------------- 156 (576)
T ss_dssp TTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTCEEEE--------------
T ss_pred hCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCcceecc--------------
Confidence 9999999999999 89999999999999999987532 11222211111111110
Q ss_pred CccHHHHHHhhhcccccccccccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHh-cCCCCCCEEEEcCCCcc
Q 006965 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MDIRKADIVAWPTNLGW 409 (623)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~l~~~d~~l~~~~l~~ 409 (623)
. ...... ...........+++++||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|++|
T Consensus 157 ---~-~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 229 (576)
T 3gqw_A 157 ---H-AWFKAL---PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYH 229 (576)
T ss_dssp ---H-HHHHTS---CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTS
T ss_pred ---h-hhhhcc---cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccc
Confidence 0 011111 111122234468999999999999999999999999999888877654 89999999999999999
Q ss_pred cchHHH-HHHHHHhCCeEEEeCC---CCChhhHHHHHHHcCCcEEEechHHHHHHHhcCc---CCCCCCccceEEEeecC
Q 006965 410 MMGPWL-VYASLLNGASIALYNG---SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC---IDGYDWSSIRCFGSTGE 482 (623)
Q Consensus 410 ~~~~~~-~~~~L~~G~~lvl~~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~---~~~~~l~~Lr~v~~gGe 482 (623)
+++++. ++.++..|+++++.+. ..++..+++.|+++++|++.++|++++.+.+... ....++++||.+++|||
T Consensus 230 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 309 (576)
T 3gqw_A 230 DMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAE 309 (576)
T ss_dssp HHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSS
T ss_pred cccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCc
Confidence 999866 6788999999998753 2478899999999999999999999988866532 24567899999999999
Q ss_pred CCCHHHHHHHHhccC-----CCCeeecccccccccccccCCcccc---------------------------CccCccCC
Q 006965 483 ASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA---------------------------QSLAAFST 530 (623)
Q Consensus 483 ~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~ 530 (623)
++++++.+++.+.++ +++++|.||+||+++.++....... ....++|+
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~ 389 (576)
T 3gqw_A 310 PISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGK 389 (576)
T ss_dssp CCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCE
T ss_pred cCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCC
Confidence 999999999988764 5789999999999876554321110 01238999
Q ss_pred CCCCcEEEEEcCCCCcCCCCCCceeEEEE-eCccCCCCccccccccccccccccccCCCceeEEecceEEEecCCcEEEE
Q 006965 531 PAMGCKLFILGNDGCPIPQNVPGMGELAL-SPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAH 609 (623)
Q Consensus 531 p~~~~~~~Vld~~~~~vp~G~~giGel~i-~~~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~dG~l~~~ 609 (623)
|++|++++|+|++|+++|.|++ |||+| ++..+.+ |+++++.+++.|. ++||+|||+|++ +||+++|+
T Consensus 390 p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g--Y~~~~~~~~~~~~-------~g~~~TGDl~~~-~dG~l~~~ 457 (576)
T 3gqw_A 390 ALPEHGIEIRNEAGMPVAERVV--GHICISGPSLMSG--YFGDQVSQDEIAA-------TGWLDTGDLGYL-LDGYLYVT 457 (576)
T ss_dssp ECTTCEEEEECTTSCBCCTTBC--EEEEEESTTSCCC--BTTCHHHHHHHHH-------HSCEEEEEEEEE-ETTEEEEE
T ss_pred cCCCCeEEEECCCCCCCCCCCe--EEEEEeCcccccc--ccCCccccccccC-------CCeeeccceEEE-ECCEEEEE
Confidence 9999999999999999999997 99999 5555554 4455665655442 349999999999 79999999
Q ss_pred cccCCeeecCceeC
Q 006965 610 GRADDTMNLGGIKV 623 (623)
Q Consensus 610 GR~dd~iki~G~rI 623 (623)
||.|||||++|+||
T Consensus 458 GR~dd~ik~~G~~v 471 (576)
T 3gqw_A 458 GRIKDLIIIRGRNI 471 (576)
T ss_dssp EETTTCEEETTEEE
T ss_pred ecCcceEEECCEEE
Confidence 99999999999996
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.1e-40 Score=347.26 Aligned_cols=225 Identities=18% Similarity=0.160 Sum_probs=193.1
Q ss_pred CCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHHHhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCCCCCh
Q 006965 356 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLG 435 (623)
Q Consensus 356 ~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~~~~~ 435 (623)
.+++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+++++.++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999875443
Q ss_pred hhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCCHHHHHHHHhccCCCCeeecccccccccccc
Q 006965 436 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI 515 (623)
Q Consensus 436 ~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 515 (623)
+++.|+++++|++.++|++++.|++... ...++++||.+++||+++++++.+++.+. +++++|.||+||++..+.
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999998753 34568999999999999999999998764 589999999999987544
Q ss_pred cCCccccCccCccCCCCCCcEEEEEcCCCCcCCCCCCceeEEEEeCccCCCCccccccccccccccccccCCCceeEEec
Q 006965 516 TGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 595 (623)
Q Consensus 516 ~~~~~~~~~~~~iG~p~~~~~~~Vld~~~~~vp~G~~giGel~i~~~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTG 595 (623)
.. .......+.+|.|.||+++.+.+ . |||++.+... .++||+||
T Consensus 190 ~~-~~~~~~~g~~~~~~pgv~~~~~~----------~--Gel~~~g~~~-----------------------~~g~~~TG 233 (358)
T 4gs5_A 190 LK-ALNGPEASELYVFLPGIQYGVDE----------R--GCLHISGAVT-----------------------NGQTVQTN 233 (358)
T ss_dssp EE-ECSSTTCCSCEEECTTCEEEECT----------T--SEEEEESGGG-----------------------TTCCEEEE
T ss_pred cc-cccccccceeeccCCCeEEEecC----------c--CceEEecccc-----------------------cCcceecC
Confidence 43 33334567899999999887743 2 9999843221 12399999
Q ss_pred ceEEEecCCcEEEEcccCCeeecCceeC
Q 006965 596 DVFERTSGGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 596 Dlg~~~~dG~l~~~GR~dd~iki~G~rI 623 (623)
|+|++|+|| ++|+||.|||||++|+||
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v 260 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKI 260 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEE
T ss_pred CccccccCc-eEEcccccCeEEECCEEE
Confidence 999999999 778899999999999997
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.7e-38 Score=341.20 Aligned_cols=244 Identities=20% Similarity=0.157 Sum_probs=197.7
Q ss_pred cCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCc-ccchHHHHHHHHHhCCeEEE
Q 006965 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLG-WMMGPWLVYASLLNGASIAL 428 (623)
Q Consensus 353 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~-~~~~~~~~~~~L~~G~~lvl 428 (623)
...++++++|+|||||||+||||+++|+++.+...... ..++++++|++++..|++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999877655443 368899999999999995 56666678899999999988
Q ss_pred eCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCC--CccceEEEeecCCCCHHHHHHHHhccCCCCeeeccc
Q 006965 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYD--WSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (623)
Q Consensus 429 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 506 (623)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 754 58899999999999999999999999998753322222 47999999999999999999998877 489999999
Q ss_pred ccccccc-cccCCccccCccCccCCCCCCcEEEEEc-CCCCcCCCCCCceeEEEEeCccCCCCccccccccccccccccc
Q 006965 507 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (623)
Q Consensus 507 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~Vld-~~~~~vp~G~~giGel~i~~~~~~~~~~~~~~~~t~~~f~~~p 584 (623)
+||+++. +...... .....+.|.+++.++|+| ++|+++|+|+. |||+|.+. +++.| |
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9998542 2221111 111245577899999999 56999999997 99999531 12233 2
Q ss_pred cCCCceeEEecceEEEecC-CcE-----EEEcccCCeeecCceeC
Q 006965 585 SRNGQILRRHGDVFERTSG-GYY-----RAHGRADDTMNLGGIKV 623 (623)
Q Consensus 585 ~~~g~~~yrTGDlg~~~~d-G~l-----~~~GR~dd~iki~G~rI 623 (623)
.+||+|||+|++++| |++ +|+||.||+||++|+||
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v 345 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNV 345 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEE
Confidence 139999999999999 987 89999999999999986
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.9e-38 Score=338.74 Aligned_cols=244 Identities=22% Similarity=0.203 Sum_probs=200.1
Q ss_pred cCCC-CCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchH-HHHHHHHHhCCeEE
Q 006965 353 EQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 427 (623)
Q Consensus 353 ~~~~-~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~-~~~~~~L~~G~~lv 427 (623)
..++ +++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3456 8999999999999999999999999977766553 44689999999999999765554 56788999999999
Q ss_pred EeCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCC--CCccceEEEeecCCCCHHHHHHHHhccCCCCeeecc
Q 006965 428 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 505 (623)
Q Consensus 428 l~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 505 (623)
+.+. .++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAAA-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCCS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCCC-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 8753 5889999999999999999999999999876433333 378999999999999999999999887 48999999
Q ss_pred cccccccccccCCccccCccCccCCCCCCcEEEEEc-CCCCcCCCCCCceeEEEEeCccCCCCccccccccccccccccc
Q 006965 506 GGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (623)
Q Consensus 506 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~Vld-~~~~~vp~G~~giGel~i~~~~~~~~~~~~~~~~t~~~f~~~p 584 (623)
|+||+++.++.... .....+|.|.+++.++|+| ++|+++|+|+. |||+|.+.. ++.| |
T Consensus 239 G~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~~-------------~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTLD-------------REMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEESS-------------CCSS---C
T ss_pred cchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEeccC-------------cCCc---e
Confidence 99999654222221 1122367788899999999 78999999997 999995311 1123 1
Q ss_pred cCCCceeEEecceEEEecCC------c---EEEEcccCCeeecCceeC
Q 006965 585 SRNGQILRRHGDVFERTSGG------Y---YRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 585 ~~~g~~~yrTGDlg~~~~dG------~---l~~~GR~dd~iki~G~rI 623 (623)
..||+|||+|++++|| + ++|+||.||+||++|+||
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v 341 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNI 341 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEE
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEE
Confidence 2399999999999998 5 699999999999999986
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.3e-37 Score=330.56 Aligned_cols=244 Identities=22% Similarity=0.194 Sum_probs=197.5
Q ss_pred cCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCC-cccchHHHHHHHHHhCCeEEE
Q 006965 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 428 (623)
Q Consensus 353 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l-~~~~~~~~~~~~L~~G~~lvl 428 (623)
...++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999877665433 36789999999999998 466666678899999999987
Q ss_pred eCCCCChhhHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCC--CccceEEEeecCCCCHHHHHHHHhccCCCCeeeccc
Q 006965 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYD--WSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (623)
Q Consensus 429 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 506 (623)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 654 58899999999999999999999999998753322222 47999999999999999999998777 489999999
Q ss_pred ccccccc-cccCCccccCccCccCCCCCCcEEEEEcC-CCCcCCCCCCceeEEEEeCccCCCCccccccccccccccccc
Q 006965 507 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (623)
Q Consensus 507 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~Vld~-~~~~vp~G~~giGel~i~~~~~~~~~~~~~~~~t~~~f~~~p 584 (623)
+||+++. +...... ....++.|.+++.++|+|+ +|+++|.|+. |||+|.+. +++.| |
T Consensus 244 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 2222211 1112566788999999994 6999999997 99999531 12233 2
Q ss_pred cCCCceeEEecceEEEec-CCcE-----EEEcccCCeeecCceeC
Q 006965 585 SRNGQILRRHGDVFERTS-GGYY-----RAHGRADDTMNLGGIKV 623 (623)
Q Consensus 585 ~~~g~~~yrTGDlg~~~~-dG~l-----~~~GR~dd~iki~G~rI 623 (623)
..||+|||+|++++ ||++ +|+||.||+||++|+||
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v 343 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNV 343 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEE
Confidence 13999999999999 6986 99999999999999986
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=100.00 E-value=1.4e-33 Score=295.48 Aligned_cols=237 Identities=15% Similarity=0.066 Sum_probs=182.0
Q ss_pred cCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCC-cccchHHHHHHHHHhCCeEEE
Q 006965 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 428 (623)
Q Consensus 353 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l-~~~~~~~~~~~~L~~G~~lvl 428 (623)
..+++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|+ .|+.++...+.++..|+ +++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 34789999999999999999999999999998888654 45678999999999999 88888888778899999 554
Q ss_pred eCCCCChh-----------------------hHHHHHHHcCCcEEEechHHHHHHHhcCcCCCCCCccceEEEeecCCCC
Q 006965 429 YNGSPLGS-----------------------GFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485 (623)
Q Consensus 429 ~~~~~~~~-----------------------~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~gGe~l~ 485 (623)
.. .++|. .++++|+++++|++.++|+++..|++.......++++||.+++|||+++
T Consensus 166 ~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 166 SI-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CC-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred Cc-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 43 35666 7778999999999999999999998764323345789999999999999
Q ss_pred HHHHHHHH-hccCCCCeeecccccccccccccCCccccCccC-ccCCC------CCCcEEEEEcC-CCCcCCCCCCceeE
Q 006965 486 VDEYLWLM-GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLA-AFSTP------AMGCKLFILGN-DGCPIPQNVPGMGE 556 (623)
Q Consensus 486 ~~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~-~iG~p------~~~~~~~Vld~-~~~~vp~G~~giGe 556 (623)
+++.+++. +.+++++++|.||+||+++.+.. ... ++|+| +++++++|+|+ +|+++|+|++ ||
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~-------~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GE 315 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRS-------LLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GN 315 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEE-------CCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceec-------cccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eE
Confidence 99999999 88878999999999998865421 112 58999 99999999997 9999999996 99
Q ss_pred EEEeCccCCCCccccccccccccccccccCCCceeEEecceEEEecC--C-------cEEEEcccCCeeecCce
Q 006965 557 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG--G-------YYRAHGRADDTMNLGGI 621 (623)
Q Consensus 557 l~i~~~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~d--G-------~l~~~GR~dd~iki~G~ 621 (623)
|+|.... +..|. + .|+|||++++.+. | .+..++|.|+++||+|.
T Consensus 316 l~vt~l~-------------~~~~l--~------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 316 VIVTHLS-------------PWAFY--P------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEE-------------TTEEE--E------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEcC-------------ccccc--c------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9994321 11221 1 5999999988643 2 47789999999999985
No 37
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.62 E-value=5.2e-10 Score=121.92 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=97.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhCC--CChhhHHHHHHhhcCCCCCCCccchhheeecccC--CCCCCCCCCC-----
Q 006965 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDF--GPDPPAWIPD----- 87 (623)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~pl~~fqv~~~~--~~~~~~~~~~----- 87 (623)
.++++++.++..+|.++|+++++...+ +||++||++|++.+++.|+.+++|+ ||++|++ .+......++
T Consensus 374 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
T 2jgp_A 374 TLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLAP 451 (520)
T ss_dssp EEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHHHHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeEE
Confidence 468888889999999999999998776 9999999999999999999999999 9999998 2111111111
Q ss_pred ---hhh--hhhccHHHHHHHhcccccCCC-CCCCCCChHHHHHHHhhCHHHHHHHHHHhcC
Q 006965 88 ---PEA--AKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMS 142 (623)
Q Consensus 88 ---~~~--~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~f~~~tv~~~~~~~~~~l~~~~ 142 (623)
... .+++||.+.+.+.++++...+ | +.++|.+++++++.++|..+|+.+.
T Consensus 452 ~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y-----~~~~~~~~~i~~l~~~~~~lL~~l~ 507 (520)
T 2jgp_A 452 FMTDETGQHAKFDLTFSATEEREEMTIGVEY-----STSLFTRETMERFSRHFLTIAASIV 507 (520)
T ss_dssp CSSCSSCSBCSSSEEEEEEECSSCEEEEEEE-----ETTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCcceeeeeEEEEEECCCeEEEEEEE-----ChhhCCHHHHHHHHHHHHHHHHHHH
Confidence 112 578888887776777788888 8 6699999999999999999999973
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.40 E-value=7.4e-07 Score=96.00 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=70.2
Q ss_pred Ccc---ceEEEeecCCCCHHHHHHHHhccCCCCee-ecccccccccccccCCccccCccCccCC-CCCCc-EEEEEc--C
Q 006965 471 WSS---IRCFGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST-PAMGC-KLFILG--N 542 (623)
Q Consensus 471 l~~---Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~-~~~Vld--~ 542 (623)
+++ +.+++.||- ..-...++..+++.+++ ..|+.||.-..+ -..+..+ +...|. .+++. =...++ +
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi-~~~p~~~--~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGI-NLDPLCK--PEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEE-CSCTTSC--GGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeee-ccCCCCC--cccCceeecCCcEEEEEEeccc
Confidence 456 555666663 23334455445667887 999999963221 1111111 111121 12332 233443 2
Q ss_pred C--CC-----cCCCCCCceeEEEEeCccCCCCccccccccccccccccccCCCceeEEecceEEEec----CCcEEEEcc
Q 006965 543 D--GC-----PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS----GGYYRAHGR 611 (623)
Q Consensus 543 ~--~~-----~vp~G~~giGel~i~~~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~----dG~l~~~GR 611 (623)
. .+ .|..|+. +||+|+.. +| -| -||+||+++... ...|.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~--~G------------L~----------RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNF--AG------------LY----------RMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECS--SS------------CC----------SEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeec--cc------------ee----------eEEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 22 2346765 88988322 11 01 299999999986 468999999
Q ss_pred cCCeeecCceeC
Q 006965 612 ADDTMNLGGIKV 623 (623)
Q Consensus 612 ~dd~iki~G~rI 623 (623)
.|++++++|++|
T Consensus 424 ~~~~l~~~Gekl 435 (581)
T 4eql_A 424 ENVVLSIDSDKT 435 (581)
T ss_dssp TTEEECSSSCCE
T ss_pred cCCEEEeeeeEC
Confidence 999999999875
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.32 E-value=2.1e-06 Score=92.58 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=29.3
Q ss_pred EEecceEEEec----CCcEEEEcccCCeeecCceeC
Q 006965 592 RRHGDVFERTS----GGYYRAHGRADDTMNLGGIKV 623 (623)
Q Consensus 592 yrTGDlg~~~~----dG~l~~~GR~dd~iki~G~rI 623 (623)
||+||++++.. ...|.|+||.+++++++|.+|
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki 447 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKT 447 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCB
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCC
Confidence 99999999974 478999999999999999886
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.25 E-value=3.8e-06 Score=90.22 Aligned_cols=122 Identities=15% Similarity=0.002 Sum_probs=68.4
Q ss_pred CccceE--EEeecCCCCHHHHHHHHhccCCCCee-ecccccccccccccCCccccCccCccC-CCCCCc-EEEEE--cCC
Q 006965 471 WSSIRC--FGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFS-TPAMGC-KLFIL--GND 543 (623)
Q Consensus 471 l~~Lr~--v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG-~p~~~~-~~~Vl--d~~ 543 (623)
+++|+. ++.+|.. ..-...++..+++.+++ ..|+.||.-+.+ -..+.. .++..+ ..+++. =...+ |+.
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi-~~~p~~--~~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAA-NVTPRL--SPEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEE-CCCTTS--CTTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeee-ecCCCC--CccccceeecCCcEEEEEEecccc
Confidence 567753 3344532 22234454445567877 999999964322 111111 111111 123332 12233 222
Q ss_pred C---------CcCCCCCCceeEEEEeCccCCCCccccccccccccccccccCCCceeEEecceEEEecC----CcEEEEc
Q 006965 544 G---------CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG----GYYRAHG 610 (623)
Q Consensus 544 ~---------~~vp~G~~giGel~i~~~~~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDlg~~~~d----G~l~~~G 610 (623)
+ ..|..|+. +||+|+... |- | -||+||++++..- ..|.|+|
T Consensus 376 ~~~~~~~v~l~eve~G~~--YelviTt~~-GL-------------~----------RYr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEE--YEVVITNYA-GL-------------Y----------RYRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTCE--EEEEEESTT-SC-------------S----------SEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCCe--EEEEEeecc-ce-------------e----------eEEcCCEEEEecccCCCcEEEEEe
Confidence 1 24567775 999884221 10 1 2999999999752 5799999
Q ss_pred ccCCeeecCceeC
Q 006965 611 RADDTMNLGGIKV 623 (623)
Q Consensus 611 R~dd~iki~G~rI 623 (623)
|.|+++++.|.+|
T Consensus 430 R~~~~l~~~Ge~~ 442 (581)
T 4epl_A 430 RRNLILSINIDKN 442 (581)
T ss_dssp ETTCCBCSSSCCB
T ss_pred ecCCeEEeeeeEC
Confidence 9999999999875
No 41
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.11 E-value=5.1e-08 Score=105.30 Aligned_cols=129 Identities=6% Similarity=-0.100 Sum_probs=89.0
Q ss_pred HHHcCCChHH--HHHHHHHHHHHHHhhCC--CChhhHHHHHHh---hcCCCCCCCccchhheeecccCC-CC--C-----
Q 006965 17 IEALGIPSKL--AEQLHEKLAEIVNTHGA--ATPATWQNITTH---ILSPDLPFSFHQLLYYGCYKDFG-PD--P----- 81 (623)
Q Consensus 17 ~~~~~~~~~~--~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~---~l~~~r~~~~~pl~~fqv~~~~~-~~--~----- 81 (623)
.++++++.++ ..+|.++|+++++...+ +| ++||++|++ .|++.|+.+++|+ ||++|++. .. .
T Consensus 299 ~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~~ 375 (493)
T 4hvm_A 299 RVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHDVVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTRG 375 (493)
T ss_dssp EEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHTTSCBTTBTTGG--GCEEECC------------
T ss_pred eeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHhhhCcccCCCCCcc--eeEEEEEEecCCccccccc
Confidence 4677888888 89999999999998777 99 999999999 9999999999999 99999991 10 0
Q ss_pred --CCCCCCh----------------------hhhhhcc---HHHHHHHhcccccCCC-CCCCCCChHHHHHHHhhCHHHH
Q 006965 82 --PAWIPDP----------------------EAAKVTN---VGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVY 133 (623)
Q Consensus 82 --~~~~~~~----------------------~~~~~~d---l~~~~~~~~~~~~~~~-y~~~~~~~~~f~~~tv~~~~~~ 133 (623)
.+..++. ...+++| +.+.+...++++...+ | +.++| +++++++.++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y-----~~~l~-~~~i~~l~~~ 449 (493)
T 4hvm_A 376 ERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQ-----RRTHP-AGGGSALLDG 449 (493)
T ss_dssp --------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEE-----CC--------CHHHHH
T ss_pred cccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEE-----ccccC-HHHHHHHHHH
Confidence 0001100 0113566 7776666677888888 8 66899 9999999999
Q ss_pred HHHHHHhcCCccccCCcccccCCCC
Q 006965 134 WKTVLNEMSTSFSVPPQCILRENPN 158 (623)
Q Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (623)
|..+|+++. +.|+..+...++
T Consensus 450 ~~~~L~~~~----~~p~~~l~~l~l 470 (493)
T 4hvm_A 450 LDAAMAQAV----ADPSAPLPHSTV 470 (493)
T ss_dssp HHHHHHHHH----HCTTSBCCC---
T ss_pred HHHHHHHHH----hCCCCccccCCC
Confidence 999999983 444555544443
No 42
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=97.92 E-value=1.4e-07 Score=100.13 Aligned_cols=117 Identities=7% Similarity=-0.009 Sum_probs=89.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhCC--CChhhHHHHHHhhcCCCCCCCccchhheeecccCCC-CCCCCCCCh-----
Q 006965 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGP-DPPAWIPDP----- 88 (623)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~pl~~fqv~~~~~~-~~~~~~~~~----- 88 (623)
.++++++.++..+|.++++++++...+ +||++||++|++.++..| +++|+ |+++|++.+ ... ..++.
T Consensus 278 ~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~i~~~l~~~~--~~~~l--f~~~~~~~~~~~~-~~~~~~~~~~ 352 (436)
T 1l5a_A 278 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNA--EQSYF--MSPFINILPFESP-HFADCQTELK 352 (436)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCT--TCCBC--CCSEEEEECCCCC-CCTTCEEEEE
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHhcccc--cCCCc--cceEEEeeccCcc-ccCCCeeEEE
Confidence 468889999999999999999998777 999999999999998776 46899 999999811 111 11111
Q ss_pred ---hhhhhccHHHHHH-HhcccccCCC-CCCCCCChHHHHHHHhhCHHHHHHHHHHhcCCc
Q 006965 89 ---EAAKVTNVGKLLQ-TRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTS 144 (623)
Q Consensus 89 ---~~~~~~dl~~~~~-~~~~~~~~~~-y~~~~~~~~~f~~~tv~~~~~~~~~~l~~~~~~ 144 (623)
....+ ||.+.+. ..++++...+ | +.++|.+++++++.++|..+|+++...
T Consensus 353 ~~~~~~~~-~l~l~v~~~~~~~l~~~~~y-----~~~~~~~~~i~~l~~~~~~~l~~l~~~ 407 (436)
T 1l5a_A 353 VLASGSAE-GINFTFRGSPQHELCLDITA-----DLASYPQSHWQSHCERFPRFFEQLLAR 407 (436)
T ss_dssp EEEECCCC-SEEEEEEECTTSCEEEEEEE-----ETTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcc-ceEEEEEecCCCcEEEEEEe-----ChhhCCHHHHHHHHHHHHHHHHHHHhc
Confidence 11223 6666554 3456677777 8 669999999999999999999998544
No 43
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=96.67 E-value=2.7e-05 Score=83.00 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=80.3
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhCC-CChhhHHHHHHhhcCCC-----CCCCccchhheeecccC-C-CC-----CCC
Q 006965 17 IEALGIPSKLAEQLHEKLAEIVNTHGA-ATPATWQNITTHILSPD-----LPFSFHQLLYYGCYKDF-G-PD-----PPA 83 (623)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~-~hq~~Pfe~lv~~l~~~-----r~~~~~pl~~fqv~~~~-~-~~-----~~~ 83 (623)
.+|++++.+...+|.++|+++++.... .||++||+ +++.++.. +..+++ ++++|++ + .. ...
T Consensus 309 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~----p~~~f~~~~~~~~~~~~~~~ 383 (466)
T 2xhg_A 309 QYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYD-ILKHVTLPENRGSLSFRVQ----PEVTFNYLGQFDADMRTELF 383 (466)
T ss_dssp EEEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHH-HHHHTSCGGGSTTCCCCCC----CSEEEEEEEECCTTCSSSSC
T ss_pred eccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccc-eeeecccccccccccccCC----CeEEEeecCcccccccCCce
Confidence 467888888888999999999998655 89999999 56777754 333444 4466665 1 00 000
Q ss_pred ---CCCCh-------------hhhhhccHHHHHHHhcccccCCC-CCCCCCChHHHHHHHhhCHHHHHHHHHHhcC
Q 006965 84 ---WIPDP-------------EAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMS 142 (623)
Q Consensus 84 ---~~~~~-------------~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~f~~~tv~~~~~~~~~~l~~~~ 142 (623)
..+.. ....+++|.+.+...++++...+ | +.++|++++|+++.++|..+|+++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y-----~~~~~~~~~i~~l~~~~~~~L~~l~ 454 (466)
T 2xhg_A 384 TRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSY-----SSEQYREESIQQLSQSYQKHLLAII 454 (466)
T ss_dssp EECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEE-----ETTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEE-----ChhhCCHHHHHHHHHHHHHHHHHHH
Confidence 01100 01126677665555566777788 8 6699999999999999999999873
No 44
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.67 E-value=2.4 Score=43.90 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=79.0
Q ss_pred CCCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHHcCCeEEec
Q 006965 189 RSLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM--NVNSVVIYLAIVLAGYIVVSI 265 (623)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~--s~~~vva~LA~~~aGa~~vpl 265 (623)
..++.+|.+....|..+.+ ...+|.+.+...+..+++.+...|+.++|++..+++- ....+..+++.+..|+..+++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 3566777655443333332 3478999999888888888888999999999999885 344455678889999999987
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEeccc
Q 006965 266 ADSFASLEISARLRISKAKAIFTQDLI 292 (623)
Q Consensus 266 dp~~~~~~l~~~l~~~~~~~ii~~~~~ 292 (623)
++ ...+++...+++.++.+++.....
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 65 478899999999999999887643
No 45
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.05 E-value=2.7 Score=43.62 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=78.4
Q ss_pred CCCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCCeEEec
Q 006965 189 RSLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVSI 265 (623)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vva~LA~~~aGa~~vpl 265 (623)
..++.+|.+....|..+.+ ...+|.+.+...+..+++.+...|+.++|++..+++-+ ...+..+++.+..|+..+++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 3456677554433333332 34789999998888888888889999999999998863 44455678889999999988
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEeccc
Q 006965 266 ADSFASLEISARLRISKAKAIFTQDLI 292 (623)
Q Consensus 266 dp~~~~~~l~~~l~~~~~~~ii~~~~~ 292 (623)
++. ..+++...+++.++.+++.....
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHH
Confidence 654 78889999999999999887643
No 46
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.35 E-value=2.3 Score=44.10 Aligned_cols=99 Identities=19% Similarity=0.109 Sum_probs=78.3
Q ss_pred CCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHHcCCeEEecCCC
Q 006965 192 DDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM--NVNSVVIYLAIVLAGYIVVSIADS 268 (623)
Q Consensus 192 d~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~--s~~~vva~LA~~~aGa~~vpldp~ 268 (623)
+.+|.+....|..+.+ ...+|.+.+...+..+++.+...|+.++|++..+++- ....+..+++.+..|+..++.++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 6778765544433332 3478999999999889888988999999999999874 445566778899999999988654
Q ss_pred CCHHHHHHHHHhcCceEEEEecc
Q 006965 269 FASLEISARLRISKAKAIFTQDL 291 (623)
Q Consensus 269 ~~~~~l~~~l~~~~~~~ii~~~~ 291 (623)
..+++...+++.++.+++....
T Consensus 166 -~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 166 -NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp -CHHHHHHHHHHHTCCEEECCHH
T ss_pred -CHHHHHHHHHHHCCCEEEECHH
Confidence 6788999999999999988764
No 47
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=84.32 E-value=0.046 Score=56.73 Aligned_cols=99 Identities=9% Similarity=-0.069 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhCC--CChhhH-----HHHHHhhcCCCCCCCccchhheeecc-cCCCC-CCCCCCCh--------h
Q 006965 27 AEQLHEKLAEIVNTHGA--ATPATW-----QNITTHILSPDLPFSFHQLLYYGCYK-DFGPD-PPAWIPDP--------E 89 (623)
Q Consensus 27 ~~~f~~~l~~~~~~~~~--~hq~~P-----fe~lv~~l~~~r~~~~~pl~~fqv~~-~~~~~-~~~~~~~~--------~ 89 (623)
..+|.++++++++...+ +||++| |+++++.+++. +|+ +++| +++.. .....++. .
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~-----~pl---~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 368 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPG-----LPP---LVFCTDATSFPTMRTPPGLEIEDIKGQF 368 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGGGGGCCCSS-----SCC---CEEEECCCCCCSCCCCTTCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHHHhcccCCC-----CCc---eEEEecCCcCCCCCCCCCceeEeeeccc
Confidence 34789999999998766 999995 99999988742 443 4455 44111 11111110 1
Q ss_pred h-hhhccHHHH-HHHhcccccCCCCCCCCCChHHHHHHHhhCHHHHHHHHHHhcC
Q 006965 90 A-AKVTNVGKL-LQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEMS 142 (623)
Q Consensus 90 ~-~~~~dl~~~-~~~~~~~~~~~~y~~~~~~~~~f~~~tv~~~~~~~~~~l~~~~ 142 (623)
. ..++++.+. +...++++...+|. .+ .+++++.++|..+|+++.
T Consensus 369 ~~~~~~~l~~~~~~~~~~~l~~~~y~-----~~----~~~~~l~~~~~~~L~~l~ 414 (422)
T 1q9j_A 369 YCSISVPLDLYSCAVYAGQLIIEHHG-----HI----AEPGKSLEAIRSLLCTVP 414 (422)
T ss_dssp CCBSSCCCCEEEEEEETTEEEEEEES-----SC----SSHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCceEEEEEeeCCeEEEEEec-----Cc----cchHHHHHHHHHHHHHhh
Confidence 1 245566554 33445555544453 33 889999999999999874
No 48
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=83.63 E-value=9.8 Score=38.10 Aligned_cols=100 Identities=11% Similarity=0.030 Sum_probs=69.0
Q ss_pred CCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHHcCCeEEecC
Q 006965 190 SLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM--NVNSVVIYLAIVLAGYIVVSIA 266 (623)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~--s~~~vva~LA~~~aGa~~vpld 266 (623)
.++.+|.+....|..+.+ ...+|.+.+...+..+++.+...|+.++|++..+++- ..--+...++++..|+.+++.+
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~ 168 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID 168 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc
Confidence 466767665544333333 3467999998888877777788899999999999886 2233344455589999666654
Q ss_pred CCCCHH-----------------------HHHHHHHhcCceEEEEecc
Q 006965 267 DSFASL-----------------------EISARLRISKAKAIFTQDL 291 (623)
Q Consensus 267 p~~~~~-----------------------~l~~~l~~~~~~~ii~~~~ 291 (623)
+.+. ++...+++.++.+++....
T Consensus 169 --~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps 214 (369)
T 3hgu_A 169 --IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPP 214 (369)
T ss_dssp --CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHH
T ss_pred --CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHH
Confidence 3344 6666889999999888764
No 49
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=81.81 E-value=4.6 Score=43.25 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=73.1
Q ss_pred CCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCCC
Q 006965 356 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS 432 (623)
Q Consensus 356 ~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~~ 432 (623)
|+.+|.+.+..+.++ ..+|.+.+...+.... ...+++++|++...++-+... +..+++++..|+..+.++..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCc
Confidence 355555544444333 3588887755554443 456899999999888876553 44567999999999998877
Q ss_pred CChhhHHHHHHHcCCcEEEechHHHHHH
Q 006965 433 PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (623)
Q Consensus 433 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l 460 (623)
.....+...++..+++++.+.+..+..+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7788999999999999999888766554
No 50
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=78.14 E-value=12 Score=39.80 Aligned_cols=103 Identities=13% Similarity=-0.029 Sum_probs=73.8
Q ss_pred CCCCeEEEEecCCC-CCCceEEEeCCchHHHHHHHH---HHhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeC
Q 006965 355 PVEAFTNILFSSGT-TGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 430 (623)
Q Consensus 355 ~~~~~a~iiyTSGS-TG~PKgV~~sh~~l~~~~~~~---~~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~ 430 (623)
.|+.+|++....+. .+. .-.+|.+.+...+... ....++.++|++...++-+..+ +..+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccC
Confidence 46778876553221 121 2357777765554443 3456899999999888776543 344679999999999988
Q ss_pred CCCChhhHHHHHHHcCCcEEEechHHHHHH
Q 006965 431 GSPLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (623)
Q Consensus 431 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 460 (623)
.......+..++++.+++++...+.....+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 777788999999999999999887665544
No 51
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=77.39 E-value=14 Score=39.23 Aligned_cols=100 Identities=15% Similarity=-0.022 Sum_probs=73.3
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++....+ .+..+|.+.+...+.... ...++.++|++...++-+... +..+++++..|+..+.++.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCc
Confidence 4567776543211 345688887755554433 456899999999888876543 3446789999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEechHHHHHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 460 (623)
....+.+..++++.++.++.+.+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 77788999999999999999988765544
No 52
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=76.58 E-value=7.9 Score=40.83 Aligned_cols=95 Identities=15% Similarity=-0.017 Sum_probs=72.6
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++. . +..+|.+.+...+.... ...++.++|++...++-+... +..+++++..|+..+.++.
T Consensus 19 ~pd~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV-D--------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE-C--------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 467787764 1 24688887765555444 456899999999888776543 3456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEechHHHHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 459 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 459 (623)
....+++..++++.++.++...+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7778899999999999999988776555
No 53
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=74.80 E-value=16 Score=39.14 Aligned_cols=101 Identities=10% Similarity=-0.018 Sum_probs=73.1
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---Hhc-CCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHM-DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 430 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~-~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~ 430 (623)
.|+.+|++.... .| +...+|.+.+...+.... ... +++++|++...++-+..+ +..+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 467788765421 12 245688887765554443 334 899999999888876543 344679999999999888
Q ss_pred CCCChhhHHHHHHHcCCcEEEechHHHHHH
Q 006965 431 GSPLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (623)
Q Consensus 431 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 460 (623)
....++.+..++++.++.++.+.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 777788899999999999998877665544
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=74.25 E-value=10 Score=40.22 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++... +| -.+|.+.+...+.... ...+++++|++...++-+..+ +..+++++..|+..+.++.
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 46788765422 22 3578887755544433 457899999999888776543 4456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEechHHHHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 459 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 459 (623)
...++.+..++++.++.++...+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 7778899999999999999887755443
No 55
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=74.23 E-value=19 Score=37.86 Aligned_cols=98 Identities=13% Similarity=0.007 Sum_probs=70.7
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++... + +..+|.+.+...+.... ...++.++|++...++-+..+ +..+++++..|+..+.++.
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 46777776421 1 24688887755554443 456899999999888877554 3456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEe--chHHHHHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGV--VPSIVRTW 460 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~--~P~~l~~l 460 (623)
...++++..++++.+++.+.. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 777889999999999999888 55554444
No 56
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=73.70 E-value=22 Score=36.86 Aligned_cols=104 Identities=12% Similarity=0.006 Sum_probs=74.1
Q ss_pred CCCCeEEEEecC--CCCCCceEEEeCCchHHHHHHHHHHh---cCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEe
Q 006965 355 PVEAFTNILFSS--GTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY 429 (623)
Q Consensus 355 ~~~~~a~iiyTS--GSTG~PKgV~~sh~~l~~~~~~~~~~---~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~ 429 (623)
.|+.+|++.... +.+| ....+|.+.+...+...... .+. ++|++...++-+..+ +..+++++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 568888776542 2223 34678988876666555443 454 899998877776543 34567999999999988
Q ss_pred CC---CCChhhHHHHHHHcCCcEEEechHHHHHHHh
Q 006965 430 NG---SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKS 462 (623)
Q Consensus 430 ~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~ 462 (623)
+. ....+++..++++.++.++...+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 65 3346789999999999999998877666543
No 57
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=70.72 E-value=20 Score=39.26 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=71.5
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---HH-hcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA---WC-HMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 430 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~---~~-~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~ 430 (623)
.|+.+|++... ..+| .+..+|.+.+...+... .. ..+++++|++..+++.+... +..+++++..|+..+.++
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 46788876542 2222 23468888775544433 34 67899999999998887654 344679999999999988
Q ss_pred CCCChhhHHHHHHHcCCcEEEechH
Q 006965 431 GSPLGSGFAKFVQDAKVTMLGVVPS 455 (623)
Q Consensus 431 ~~~~~~~l~~~i~~~~vt~l~~~P~ 455 (623)
....++.+...|++.++.++++.+.
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7778889999999999999888653
No 58
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=69.73 E-value=25 Score=37.78 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=71.0
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---HHhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++.... .| ....+|.+.+...+... ....+++++|++...++-+... +..+++++..|+..+.++.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 578888876533 12 34678888775554443 3456899999999888876553 3446799999999998887
Q ss_pred CCChhhHHHHHHHcCCcEEEech
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVP 454 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P 454 (623)
...+..+...+++.++.++.+.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 77788999999999999988754
No 59
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=69.56 E-value=40 Score=35.64 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=72.6
Q ss_pred CCCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHH---HHHHHHHcCCeEEe
Q 006965 189 RSLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVV---IYLAIVLAGYIVVS 264 (623)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv---a~LA~~~aGa~~vp 264 (623)
..|+.+|++.-..|..+.+ ...+|.+.+...+..++. ..++.++|++..++|-+..+-. .+++.+..|+..+.
T Consensus 188 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 188 TPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp CCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 4578888876544333332 357899998877666554 3589999999999886554433 47888999999888
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecc
Q 006965 265 IADSFASLEISARLRISKAKAIFTQDL 291 (623)
Q Consensus 265 ldp~~~~~~l~~~l~~~~~~~ii~~~~ 291 (623)
.+ .....++...+++.++..+.....
T Consensus 265 ~~-~~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 265 AP-NPEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHH
T ss_pred CC-CCCHHHHHHHHHHHCCCEEEechH
Confidence 74 467888889999999999988764
No 60
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=69.41 E-value=19 Score=38.44 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=71.2
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++. . +-.+|.+.+...+.... ...+++++|++...++-+... +..+++++..|+..+.++.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 467777653 1 13578887755554443 456899999998888776543 3446799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEechHHHHHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 460 (623)
....+.+..++++.++.++...+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 77788999999999999999888655443
No 61
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=67.95 E-value=27 Score=38.04 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=70.6
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++.. +..+| .+..+|.+.+...+.... ...+++++|++...++-+..+ +..+++++..|+..+.++.
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 3677777643 22222 245688887755554443 456899999999988887654 4456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEech
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVP 454 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P 454 (623)
...++.+...+++.++.++.+..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77888999999999999887753
No 62
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=67.55 E-value=53 Score=34.62 Aligned_cols=100 Identities=17% Similarity=0.074 Sum_probs=73.3
Q ss_pred CCCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH--HH-HHHHHHHcCCeEEe
Q 006965 189 RSLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS--VV-IYLAIVLAGYIVVS 264 (623)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~--vv-a~LA~~~aGa~~vp 264 (623)
..|+.+|++.-..|..+.+ ...+|.+.+...+..... ..++.++|++...+|-+..+ .. .+++.+..|+..+.
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 255 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEE
Confidence 4578888876544433332 357899988776655543 34789999999998876443 33 57889999999888
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEeccc
Q 006965 265 IADSFASLEISARLRISKAKAIFTQDLI 292 (623)
Q Consensus 265 ldp~~~~~~l~~~l~~~~~~~ii~~~~~ 292 (623)
.+ ....+++...+++.++.++......
T Consensus 256 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~ 282 (539)
T 1mdb_A 256 SP-SPSPDDAFPLIEREKVTITALVPPL 282 (539)
T ss_dssp CS-SSSHHHHHHHHHHHTCSEEEECHHH
T ss_pred CC-CCCHHHHHHHHHHcCCeEEEccHHH
Confidence 74 5678899999999999999887643
No 63
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=67.06 E-value=52 Score=34.26 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCeEEecC
Q 006965 189 RSLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS-VVIYLAIVLAGYIVVSIA 266 (623)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~-vva~LA~~~aGa~~vpld 266 (623)
..|+.+|.+.-..|..+.+ ...+|.+.+...+..+.. ..++.++|++..++|-...+ +..+++.+..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 4678888876554433332 347899988876665543 45899999999998875432 334678888999988875
Q ss_pred CCCCHHHHHHHHHhcCceEEEEeccc
Q 006965 267 DSFASLEISARLRISKAKAIFTQDLI 292 (623)
Q Consensus 267 p~~~~~~l~~~l~~~~~~~ii~~~~~ 292 (623)
.+..+++...+++.++..+......
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~~ 261 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQT 261 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHHH
Confidence 4788999999999999999887643
No 64
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=66.99 E-value=19 Score=37.80 Aligned_cols=80 Identities=19% Similarity=0.071 Sum_probs=62.5
Q ss_pred EeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEEe
Q 006965 376 PWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGV 452 (623)
Q Consensus 376 ~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~ 452 (623)
.+|.+.+...+.... ...+++++|++...++-+..+ +..+++++..|+..+.++.....+++..++++.++.++.+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 578887755554443 456899999999888776543 3456799999999999887777889999999999999988
Q ss_pred chHH
Q 006965 453 VPSI 456 (623)
Q Consensus 453 ~P~~ 456 (623)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7653
No 65
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=65.69 E-value=42 Score=35.80 Aligned_cols=101 Identities=10% Similarity=-0.009 Sum_probs=73.5
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++....+ .+-.+|.+.+...+.... ...++.++|++...++-+.. .+..+++++..|+..+.++.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEecC
Confidence 5688887655421 345788887755554443 45689999999988887655 34456799999999998865
Q ss_pred CC---ChhhHHHHHHHcCCcEEEechHHHHHHH
Q 006965 432 SP---LGSGFAKFVQDAKVTMLGVVPSIVRTWK 461 (623)
Q Consensus 432 ~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 461 (623)
.. ....+..+++..++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 2356788899999999999888776654
No 66
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=65.01 E-value=23 Score=37.32 Aligned_cols=95 Identities=8% Similarity=-0.040 Sum_probs=69.8
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++.. | ..+|.+.+...+.... ...+++++|++...++-+... +..+++++..|+..+.++.
T Consensus 36 ~p~~~A~~~~-----~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD-----T----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS-----S----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC-----C----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4677776522 1 3578887755554443 456899999999888877643 3446799999999998887
Q ss_pred CCChhhHHHHHHHcCCcEEEechHHHHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 459 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 459 (623)
...+..+..++++.++.++...+.....
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 133 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQN 133 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhH
Confidence 7778889999999999998887765433
No 67
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=64.24 E-value=24 Score=37.47 Aligned_cols=84 Identities=12% Similarity=-0.052 Sum_probs=64.7
Q ss_pred EEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCCCCChhhHHHHHHHcCCcEEE
Q 006965 375 IPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLG 451 (623)
Q Consensus 375 V~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~ 451 (623)
..+|.+.+...+.... ...+++++|++...++-+...- ..+++++..|+..+.++....++++..++++.++.+++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFF-IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 3578887765554443 4468999999998888776543 44679999999999988777788999999999999998
Q ss_pred echHHHHH
Q 006965 452 VVPSIVRT 459 (623)
Q Consensus 452 ~~P~~l~~ 459 (623)
+.+.....
T Consensus 130 ~~~~~~~~ 137 (548)
T 2d1s_A 130 SSKKGLDK 137 (548)
T ss_dssp ECTTTHHH
T ss_pred EcHHHHHH
Confidence 87765443
No 68
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=63.61 E-value=28 Score=37.15 Aligned_cols=92 Identities=14% Similarity=0.083 Sum_probs=68.7
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++. . +-.+|.+.+...+.... ...++.++|++...++-+..+ +..+++++..|+..+.++.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 467777653 1 13578887755554433 456899999999888776543 3446799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEechHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSI 456 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~ 456 (623)
....+++..++++.++.++......
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7778899999999999998887654
No 69
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=59.83 E-value=33 Score=36.05 Aligned_cols=95 Identities=15% Similarity=-0.002 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++.. | +...+|.+.+...+.... ...++.++|++...++-+..+ +..+++++..|+..+.++.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF-CCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCc
Confidence 4677776643 1 224688887755554443 456899999999888876543 3446799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEechHHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSIV 457 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~l 457 (623)
....+++..++++.++.++...+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 77788899999999999988766543
No 70
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=53.89 E-value=38 Score=38.99 Aligned_cols=95 Identities=14% Similarity=-0.002 Sum_probs=70.8
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++.-. +| ..+|.+.+...+.... ...+++++|++...++-+..+ +..+++++..|+..+.++.
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEeeCC
Confidence 57888876422 22 3578877655544433 457899999999888877543 3456799999999999987
Q ss_pred CCChhhHHHHHHHcCCcEEEechHHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSIV 457 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~l 457 (623)
...++++..++++.++.++...+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 77888999999999999998876543
No 71
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=53.48 E-value=39 Score=35.38 Aligned_cols=89 Identities=4% Similarity=-0.133 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++. . +-.+|.+.+...+.... ...++.++|++...++-+.. .+..+++++..|+..+.++.
T Consensus 14 ~p~~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e-~~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVW-R--------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPE-MIINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHH-HHHHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEe-C--------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCC
Confidence 467777653 1 12578887755554443 44688999998887766553 34456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEec
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVV 453 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~ 453 (623)
....+.+..++++.++.++...
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 7778899999999999887764
No 72
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=52.61 E-value=72 Score=33.29 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=72.8
Q ss_pred CCCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCeEEecC
Q 006965 189 RSLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS-VVIYLAIVLAGYIVVSIA 266 (623)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~-vva~LA~~~aGa~~vpld 266 (623)
..++.+|++.-..|..+.+ ...+|.+.+...+..++. ..++.++|++..++|-+..+ +..+++++..|+..+.++
T Consensus 140 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 216 (511)
T 3e7w_A 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT 216 (511)
T ss_dssp CCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 3567788766544333332 347899988776655443 46889999999998875433 345788899999988875
Q ss_pred CC--CCHHHHHHHHHhcCceEEEEeccc
Q 006965 267 DS--FASLEISARLRISKAKAIFTQDLI 292 (623)
Q Consensus 267 p~--~~~~~l~~~l~~~~~~~ii~~~~~ 292 (623)
.. ..++.+...+++.++.+++.....
T Consensus 217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 244 (511)
T 3e7w_A 217 KDAVNKPKVLFEELKKSGLNVWTSTPSF 244 (511)
T ss_dssp HHHHHSHHHHHHHHHHHCCSEEEECHHH
T ss_pred hhhhcCHHHHHHHHHHcCCcEEEecHHH
Confidence 53 467888899999999998887643
No 73
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=48.18 E-value=98 Score=32.68 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=67.0
Q ss_pred CCCCeEEEEecCCCCCCc--eEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEe
Q 006965 355 PVEAFTNILFSSGTTGEP--KAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY 429 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~P--KgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~ 429 (623)
.|+.+|++... +..+.. ..-.+|.+.+...+.... ...++ ++|++...++-+..+ +..+++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEec
Confidence 56778776543 233333 235678887755554443 34577 799998888776544 34467999999999998
Q ss_pred CCCCChhhHHHHHHHcCCcEEEech
Q 006965 430 NGSPLGSGFAKFVQDAKVTMLGVVP 454 (623)
Q Consensus 430 ~~~~~~~~l~~~i~~~~vt~l~~~P 454 (623)
+.......+..++++.++.++....
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 8777788899999999999877653
No 74
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=47.10 E-value=81 Score=28.74 Aligned_cols=83 Identities=14% Similarity=-0.004 Sum_probs=49.9
Q ss_pred cccchHHHHHHHHH-hCCeEEEeCCCCChhhHHHHHHHcCCcEEEe------chHH--HHHHHhcCcCCCCCCccceEEE
Q 006965 408 GWMMGPWLVYASLL-NGASIALYNGSPLGSGFAKFVQDAKVTMLGV------VPSI--VRTWKSTNCIDGYDWSSIRCFG 478 (623)
Q Consensus 408 ~~~~~~~~~~~~L~-~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~------~P~~--l~~l~~~~~~~~~~l~~Lr~v~ 478 (623)
.|+.|...+-..|. .|..++.......++.+.+.+.++++.++.+ ++++ +..+++....... ...++ ++
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~-~~~v~-v~ 181 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKL-RDSVK-CM 181 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTC-GGGSE-EE
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCC-CCCCE-EE
Confidence 58888766544444 5666666544556789999999999997776 2222 2222222111110 01344 67
Q ss_pred eecCCCCHHHHHHH
Q 006965 479 STGEASNVDEYLWL 492 (623)
Q Consensus 479 ~gGe~l~~~~~~~~ 492 (623)
+||.+++++..+.+
T Consensus 182 vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 182 FGGAPVSDKWIEEI 195 (215)
T ss_dssp EESSSCCHHHHHHH
T ss_pred EECCCCCHHHHHHh
Confidence 89999998765543
No 75
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=44.93 E-value=52 Score=34.42 Aligned_cols=90 Identities=8% Similarity=-0.109 Sum_probs=65.6
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++. . +-.+|.+.+...+.... ...++.++|++...++-+... +..+++++..|+..+.++.
T Consensus 17 ~p~~~a~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDC-L--------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCCcceec-C--------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCc
Confidence 456676553 1 23478887755554443 456899999988877766533 3456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEech
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVP 454 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P 454 (623)
...++.+..++++.++.++....
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESS
T ss_pred cccHHHHHHHHHhCCCCEEEecC
Confidence 77788999999999999887754
No 76
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=44.92 E-value=1.6e+02 Score=30.55 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=70.5
Q ss_pred CCCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEec
Q 006965 189 RSLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN--SVVIYLAIVLAGYIVVSI 265 (623)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~--~vva~LA~~~aGa~~vpl 265 (623)
..|+.+|++.-..|..+.+ ...+|.+.+...+..++..+ ++.++|++...+|-... ++..+++.+..|+..+.+
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 4577888766544433332 35789999988877666544 78899999988886433 344578999999998887
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEeccc
Q 006965 266 ADSFASLEISARLRISKAKAIFTQDLI 292 (623)
Q Consensus 266 dp~~~~~~l~~~l~~~~~~~ii~~~~~ 292 (623)
+.+..+.+...+ +.++..++.....
T Consensus 229 -~~~~~~~~~~~i-~~~~t~~~~~P~~ 253 (505)
T 3nyq_A 229 -GRFSTEGAAREL-NDGATMLFGVPTM 253 (505)
T ss_dssp -SSCCHHHHHHHH-TTTCCEEEECHHH
T ss_pred -CCCChHHHHHHH-hhCCeEEEehHHH
Confidence 456677777777 6788888876643
No 77
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=43.20 E-value=86 Score=33.12 Aligned_cols=86 Identities=9% Similarity=-0.050 Sum_probs=63.7
Q ss_pred EEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCCCCC-------hhhHHHHHH
Q 006965 374 AIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL-------GSGFAKFVQ 443 (623)
Q Consensus 374 gV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~~~~-------~~~l~~~i~ 443 (623)
+-.+|.+.+...+.... ...++.++|++...++-+... +..+++++..|+..+.++.... ...+..+++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 45788887765554443 456899999999888876543 3446799999999998865443 467888999
Q ss_pred HcCCcEEEechHHHHHH
Q 006965 444 DAKVTMLGVVPSIVRTW 460 (623)
Q Consensus 444 ~~~vt~l~~~P~~l~~l 460 (623)
+.++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999887655443
No 78
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=41.94 E-value=80 Score=33.95 Aligned_cols=89 Identities=13% Similarity=-0.006 Sum_probs=65.9
Q ss_pred CCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCCC
Q 006965 356 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS 432 (623)
Q Consensus 356 ~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~~ 432 (623)
|+.+|.+- | +-.+|.+.+...+.... ...+++++|++...++-+..+ +..+++++..|+..|.++..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~-vva~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAEL-YITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHH-HHHHHHHHhcCeEEccCCcc
Confidence 67777652 1 23578887755554443 456899999999888776544 34467999999999988776
Q ss_pred CChhhHHHHHHHcCCcEEEech
Q 006965 433 PLGSGFAKFVQDAKVTMLGVVP 454 (623)
Q Consensus 433 ~~~~~l~~~i~~~~vt~l~~~P 454 (623)
....++..++++.++.++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 6778899999999999888764
No 79
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=37.50 E-value=1.1e+02 Score=30.00 Aligned_cols=67 Identities=24% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHCCC-CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHHhcCceEEEEecc
Q 006965 225 YALNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291 (623)
Q Consensus 225 ~~L~~~Gv-~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~~ 291 (623)
..+.+.|. ++|+.|.+....+-.-...-+++.+.|.-++.+-|...+..-..+++..++.+++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34455664 88888645555566667777778888986655545444445566788999999999753
No 80
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=32.79 E-value=1e+02 Score=33.20 Aligned_cols=89 Identities=7% Similarity=-0.156 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHH---HhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|++. .. -.+|.+.+...+.... ...+++++|++...++-+..+ +..+++.+..|+..+.++.
T Consensus 40 ~Pd~~Av~~-~~--------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-RF--------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRES-ITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-TT--------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-CC--------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCc
Confidence 467777653 11 2578887755544443 456899999998888876543 3446799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEec
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVV 453 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~ 453 (623)
....+++..++++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 6677789999999999887744
No 81
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=28.88 E-value=1.5e+02 Score=29.05 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=61.6
Q ss_pred CCCCeEEEEeccCCCCCC-ceeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCeEEecCC
Q 006965 190 SLDDIVIRWCDEGDGGLP-VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS-VVIYLAIVLAGYIVVSIAD 267 (623)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~-~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~-vva~LA~~~aGa~~vpldp 267 (623)
..|.+|++.-..|..+.+ ...+|.+.|...+..++. ..+++++|++..++|-+..+ +..++..+..|+..+..++
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 356777765433333332 347899998776655544 35899999999998866432 3445566777887777665
Q ss_pred CCCHHHHHHHHHhcCceEEEEecc
Q 006965 268 SFASLEISARLRISKAKAIFTQDL 291 (623)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~ii~~~~ 291 (623)
... ....+++.++..+.....
T Consensus 112 ~~~---~~~~i~~~~~t~~~~~P~ 132 (358)
T 4gs5_A 112 TAN---PLAGLDHADFDFVAMVPM 132 (358)
T ss_dssp CSC---TTTTCSSCCCSEEEECHH
T ss_pred ccc---HHHHHHHhCCeEEEcChH
Confidence 432 234567778877776653
No 82
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=28.28 E-value=1.4e+02 Score=29.68 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=40.6
Q ss_pred HHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecC--C---CCCHHHHHHHHHhcC--ceEEEEe
Q 006965 226 ALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA--D---SFASLEISARLRISK--AKAIFTQ 289 (623)
Q Consensus 226 ~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpld--p---~~~~~~l~~~l~~~~--~~~ii~~ 289 (623)
.|...++++||.|.+-.+...... -++...|+.++.++ + ....+.+...+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 344557899999988777655433 35667898765554 3 246788888875444 7777743
No 83
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=25.35 E-value=1.5e+02 Score=29.96 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEcCCC-HHHHHHHH-HHHHcCCeEEec
Q 006965 217 RAEVWLVAYALNA--LGLDKGSAIAIDMPMN-VNSVVIYL-AIVLAGYIVVSI 265 (623)
Q Consensus 217 ~~~a~~lA~~L~~--~Gv~~gd~Vai~~~~s-~~~vva~L-A~~~aGa~~vpl 265 (623)
..+..++|..+.+ .++++|+.|.|..+-. .+++-++. ++.++||-++.+
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 4567778888777 4789999999998854 45554444 888999988765
No 84
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=25.10 E-value=1.3e+02 Score=29.41 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=49.3
Q ss_pred eecHHHHHHHHHHH--H-HHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHHhcCceEE
Q 006965 210 SMTLKELRAEVWLV--A-YALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAI 286 (623)
Q Consensus 210 ~lTY~eL~~~a~~l--A-~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpldp~~~~~~l~~~l~~~~~~~i 286 (623)
.+++.|........ | +.|+..++++|++|.|...-+.-..+++++....|+..+-++.. .++ ..+++..++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 56777654333222 2 33556789999999999887666666666665556666655543 444 345667788777
Q ss_pred EEe
Q 006965 287 FTQ 289 (623)
Q Consensus 287 i~~ 289 (623)
|..
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
No 85
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=24.76 E-value=2.4e+02 Score=27.68 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=47.2
Q ss_pred HHHCC-CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 006965 227 LNALG-LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (623)
Q Consensus 227 L~~~G-v~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~ 290 (623)
+.+.| +++|.+..+....+-.-+..-+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 34444 67887666677777777778888889998666555655555666778999999999875
No 86
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=24.71 E-value=86 Score=29.72 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEEcCC
Q 006965 221 WLVAYALNALGLDKGSAIAIDMPM 244 (623)
Q Consensus 221 ~~lA~~L~~~Gv~~gd~Vai~~~~ 244 (623)
+.|...|+++||++||.|.|...-
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 457788999999999999999764
No 87
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.01 E-value=1.9e+02 Score=34.23 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=67.2
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---HHhcCCCCCCEEEEcCCCcccchHHHHHHHHHhCCeEEEeCC
Q 006965 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (623)
Q Consensus 355 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~l~~~d~~l~~~~l~~~~~~~~~~~~L~~G~~lvl~~~ 431 (623)
.|+.+|.+ +. +-.+|.+.+...+... ....++++++++...++-+..+- ..+++.+.+|+..|.++.
T Consensus 477 ~p~~~Av~-~~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-v~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALT-YS--------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV-IGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEE-SS--------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEE-EC--------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEECC
Confidence 46777764 21 1247887765444433 34568999999998888776543 446799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEechHH
Q 006965 432 SPLGSGFAKFVQDAKVTMLGVVPSI 456 (623)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~l~~~P~~ 456 (623)
....+++..++++.++.++.+.+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 6677889999999999988876654
No 88
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=22.80 E-value=2.8e+02 Score=29.04 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=48.1
Q ss_pred CEEEEcCCCcccchH--HHHHHHHHhCCeEEEeCCCCCh---hhHHHHHHHcC-----CcEEEechHHHHHHHhcCcCCC
Q 006965 399 DIVAWPTNLGWMMGP--WLVYASLLNGASIALYNGSPLG---SGFAKFVQDAK-----VTMLGVVPSIVRTWKSTNCIDG 468 (623)
Q Consensus 399 d~~l~~~~l~~~~~~--~~~~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~-----vt~l~~~P~~l~~l~~~~~~~~ 468 (623)
-+++..+|+.|-..+ +-+..+|.+|.++|+-+....| ..+.+++.+.+ ++++.........|++++
T Consensus 164 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~p---- 239 (521)
T 4e4g_A 164 GIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTHP---- 239 (521)
T ss_dssp CEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTCT----
T ss_pred cEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhCC----
Confidence 356777787776654 5577899999999997654433 35677787763 233333344556676553
Q ss_pred CCCccceEEEeecC
Q 006965 469 YDWSSIRCFGSTGE 482 (623)
Q Consensus 469 ~~l~~Lr~v~~gGe 482 (623)
.++.|...|+
T Consensus 240 ----~vd~I~FTGS 249 (521)
T 4e4g_A 240 ----DIAAVSFVGS 249 (521)
T ss_dssp ----TCCEEEEESC
T ss_pred ----CcCEEEEECC
Confidence 3556666665
No 89
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=21.86 E-value=3e+02 Score=28.49 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=49.3
Q ss_pred CEEEEcCCCcccchH--HHHHHHHHhCCeEEEeCCCCCh---hhHHHHHHHcC--C---cEEEechHHHHHHHhcCcCCC
Q 006965 399 DIVAWPTNLGWMMGP--WLVYASLLNGASIALYNGSPLG---SGFAKFVQDAK--V---TMLGVVPSIVRTWKSTNCIDG 468 (623)
Q Consensus 399 d~~l~~~~l~~~~~~--~~~~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~--v---t~l~~~P~~l~~l~~~~~~~~ 468 (623)
-+++..+|+.|-..+ +.+..+|.+|.++++-+....| ..+.+++.+.+ . +++...+..-..|++++
T Consensus 143 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~---- 218 (486)
T 1t90_A 143 GVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHP---- 218 (486)
T ss_dssp SEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCT----
T ss_pred CEEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhCC----
Confidence 467788888876543 5578999999999997654433 35778888763 2 23333334556666542
Q ss_pred CCCccceEEEeecC
Q 006965 469 YDWSSIRCFGSTGE 482 (623)
Q Consensus 469 ~~l~~Lr~v~~gGe 482 (623)
.++.|..+|+
T Consensus 219 ----~v~~I~fTGS 228 (486)
T 1t90_A 219 ----EIKAISFVGS 228 (486)
T ss_dssp ----TEEEEEEESC
T ss_pred ----CCCEEEEeCC
Confidence 4677776665
No 90
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=21.65 E-value=3.1e+02 Score=26.61 Aligned_cols=63 Identities=25% Similarity=0.165 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEcCCCH------HHHHHHHHHH-HcCCeEEecCCC---------CC---HHHHHHHHHhcCceEEEEecc
Q 006965 231 GLDKGSAIAIDMPMNV------NSVVIYLAIV-LAGYIVVSIADS---------FA---SLEISARLRISKAKAIFTQDL 291 (623)
Q Consensus 231 Gv~~gd~Vai~~~~s~------~~vva~LA~~-~aGa~~vpldp~---------~~---~~~l~~~l~~~~~~~ii~~~~ 291 (623)
-+++||+|+|+.|.+. +.+-.-+..+ ..|.-++.-..- .+ .+++..++.|-..++|++..+
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999752 3333333333 346555543211 12 345667788889999999875
Q ss_pred cc
Q 006965 292 II 293 (623)
Q Consensus 292 ~~ 293 (623)
-.
T Consensus 88 G~ 89 (327)
T 4h1h_A 88 GF 89 (327)
T ss_dssp CS
T ss_pred ch
Confidence 43
No 91
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.99 E-value=4.4e+02 Score=25.76 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=39.8
Q ss_pred HHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecCC--C--CCHHHHHHHHHhc--CceEEEEec
Q 006965 227 LNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD--S--FASLEISARLRIS--KAKAIFTQD 290 (623)
Q Consensus 227 L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpldp--~--~~~~~l~~~l~~~--~~~~ii~~~ 290 (623)
++..++++||.|.+..+....... ++...|+.++.++. + ...+.+...+++. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 333457899999888776655433 34457876665543 2 4678888888764 566666654
No 92
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=20.79 E-value=3.2e+02 Score=28.28 Aligned_cols=76 Identities=12% Similarity=-0.037 Sum_probs=47.7
Q ss_pred CEEEEcCCCcccchH--HHHHHHHHhCCeEEEeCCCCCh---hhHHHHHHHcC--C---cEEEechHHHHHHHhcCcCCC
Q 006965 399 DIVAWPTNLGWMMGP--WLVYASLLNGASIALYNGSPLG---SGFAKFVQDAK--V---TMLGVVPSIVRTWKSTNCIDG 468 (623)
Q Consensus 399 d~~l~~~~l~~~~~~--~~~~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~--v---t~l~~~P~~l~~l~~~~~~~~ 468 (623)
-+++..+|+.|-..+ +.+..+|.+|.++++-+....| ..+.+++.+.+ . +++...+..-+.|++++
T Consensus 141 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~---- 216 (490)
T 3ju8_A 141 GVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAHR---- 216 (490)
T ss_dssp SEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTCT----
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhCC----
Confidence 367777887776654 5577899999999997654443 34667777753 2 33333345556666542
Q ss_pred CCCccceEEEeecC
Q 006965 469 YDWSSIRCFGSTGE 482 (623)
Q Consensus 469 ~~l~~Lr~v~~gGe 482 (623)
.++.|...|+
T Consensus 217 ----~v~~V~fTGS 226 (490)
T 3ju8_A 217 ----GLDGLFFTGS 226 (490)
T ss_dssp ----TCSEEEEESC
T ss_pred ----CcCEEEEECc
Confidence 3555666664
No 93
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=20.76 E-value=3.3e+02 Score=26.17 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=41.0
Q ss_pred HHHCCC-CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 006965 227 LNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (623)
Q Consensus 227 L~~~Gv-~~gd~Vai~~~~s~~~vva~LA~~~aGa~~vpldp~~~~~~l~~~l~~~~~~~ii~~~ 290 (623)
+.+.|. ++|....+....+-.-...-+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 121 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Confidence 445664 5664333344556666666667778998655554443444555678889999999875
No 94
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=20.47 E-value=1.9e+02 Score=21.25 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=31.8
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Q 006965 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (623)
Q Consensus 210 ~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~LA~~~aGa 260 (623)
.+.+.+|.+ .+.+.++.+++.|.++|..+.....+...+.+.|.
T Consensus 23 ~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 23 NIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp ECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 677777654 34455778899999999988777666666666664
Done!