BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006966
         (623 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
          Length = 101

 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 420 SWCVAKNGVSETAIQQALDYACGIGGADCSLIQQGASCYNPNTLQNHASFAFNSYYQK-N 478
           SWCV K GVS+  +   ++YAC  G  DC  IQ G +C+ PNT++ HA++  N YYQ   
Sbjct: 12  SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70

Query: 479 PSPTSCDFGGTAMIVNTNPSTGSCVF 504
            +  +CDF  TA + NTNPS G+C F
Sbjct: 71  RNSWNCDFSQTATLTNTNPSYGACNF 96


>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
           Endohydrolases With Distinct Substrate Specificities
 pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
           Endohydrolases With Distinct Substrate Specificities
          Length = 306

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 93  LSLVVDLMQSELS--------AISWLETNVLTTHPHVNIKSIILSCSSEEFEGKNVLPLI 144
           + L++D+   +L+        A SW++ NV   +P VNIK I      +    +++LP +
Sbjct: 48  IGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQSILPAM 107


>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
           B 2), A Major Allergen From Hevea Brasiliensis
 pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
           B 2), A Major Allergen From Hevea Brasiliensis
 pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
           B 2), A Major Allergen From Hevea Brasiliensis
 pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
           B 2), A Major Allergen From Hevea Brasiliensis
 pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
           (Hev B 2), A Major Allergen From Hevea Brasiliensis
           (Space Group P41)
 pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
           (Hev B 2), A Major Allergen From Hevea Brasiliensis
           (Space Group P41)
 pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
           (Hev B 2), A Major Allergen From Hevea Brasiliensis
           (Space Group P41)
 pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
           (Hev B 2), A Major Allergen From Hevea Brasiliensis
           (Space Group P41)
          Length = 316

 Score = 29.6 bits (65), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 92  NLSLVVDLMQSELSAI-------SWLETNVLTTHPHVNIKSIILSCS-SEEFEGKNVLP- 142
           N+ L++ +  S+L ++       SW++ NV      V  + I +    S    G   L  
Sbjct: 48  NIELILGVPNSDLQSLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQ 107

Query: 143 LILSALKSFHSALNRIHLDMKVKVSVAFPLPLLEN 177
            +L A+++ H A+    L  ++KVS A  L L+ N
Sbjct: 108 FVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGN 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,239,835
Number of Sequences: 62578
Number of extensions: 454728
Number of successful extensions: 1136
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 5
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)