BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006969
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RMJ|A Chain A, Crystal Structure Of Truncated Alpha-Isopropylmalate
Synthase From Neisseria Meningitidis
pdb|3RMJ|B Chain B, Crystal Structure Of Truncated Alpha-Isopropylmalate
Synthase From Neisseria Meningitidis
Length = 370
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/382 (56%), Positives = 264/382 (69%), Gaps = 16/382 (4%)
Query: 71 PNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF 130
P + N V +FDTTLRDGEQSPGA +T +EK+ +ARQL KLGVDIIEAGF AAS DF
Sbjct: 4 PFTMTQTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDF 63
Query: 131 EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIH 190
EAV IAK + + +C LSR ERDI+ A EAV A + RIHTFIATS IH
Sbjct: 64 EAVNAIAKTITKST---------VCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIH 114
Query: 191 MEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250
ME+KL+ +QV+E A VK AR DDVEFS EDA RS+ FL EI G VI+ GATT
Sbjct: 115 MEYKLKMKPKQVIEAAVKAVKIAREY-TDDVEFSCEDALRSEIDFLAEICGAVIEAGATT 173
Query: 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310
+NIPDTVG ++P + + ++ A TP VV S HC NDLGL+ AN++A GARQV
Sbjct: 174 INIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQV 233
Query: 311 EVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQP 370
E T+NG+GERAGNAS+EE+VMA K R H L GL TGI+T IV +SK+V TG VQP
Sbjct: 234 ECTVNGLGERAGNASVEEIVMALKVR--HDLFGLETGIDTTQIVPSSKLVSTITGYPVQP 291
Query: 371 HKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDR 430
+KAIVGANAF+HESGIHQDG+LKH+ TYEI+S E +G + + LGKLSGR+A K +
Sbjct: 292 NKAIVGANAFSHESGIHQDGVLKHRETYEIMSAESVGWATNR---LSLGKLSGRNAFKTK 348
Query: 431 LKELGYEL-NDEQLGTIFWHFK 451
L +LG EL ++E L F FK
Sbjct: 349 LADLGIELESEEALNAAFARFK 370
>pdb|3EEG|A Chain A, Crystal Structure Of A 2-Isopropylmalate Synthase From
Cytophaga Hutchinsonii
pdb|3EEG|B Chain B, Crystal Structure Of A 2-Isopropylmalate Synthase From
Cytophaga Hutchinsonii
Length = 325
Score = 317 bits (813), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 214/320 (66%), Gaps = 12/320 (3%)
Query: 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVG 141
VFDTTLRDGEQ PG L ++EK+ +A+ L +LGVD+IEAGFP +S DF +V I K V
Sbjct: 9 VFDTTLRDGEQVPGCQLNTEEKIIVAKALDELGVDVIEAGFPVSSPGDFNSVVEITKAVT 68
Query: 142 NAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQ 201
P IC L+R E DI A EA+++AKR RIHT I +S IH+EHKLR T++
Sbjct: 69 R---------PTICALTRAKEADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTREN 119
Query: 202 VVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITM 261
++E A + VK A+ + +VEF EDAGR+D+ FL + VI+ GA +NIPDT G +
Sbjct: 120 ILEXAVAAVKQAKKV-VHEVEFFCEDAGRADQAFLARXVEAVIEAGADVVNIPDTTGYXL 178
Query: 262 PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321
P ++G+ I + N I+ ++S HC NDLGL+TAN++A GARQVE TINGIGERA
Sbjct: 179 PWQYGERIKYLXDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECTINGIGERA 238
Query: 322 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFA 381
GN +LEEVV A +C E + GL TGIN + +V S +V VQ +KAIVG NAFA
Sbjct: 239 GNTALEEVVXAXECHKETL--GLETGINHKKLVPISHLVSTLXRXQVQSNKAIVGRNAFA 296
Query: 382 HESGIHQDGMLKHKGTYEII 401
H SGIHQDG LKH+ TYEII
Sbjct: 297 HSSGIHQDGFLKHRETYEII 316
>pdb|3EWB|X Chain X, Crystal Structure Of N-Terminal Domain Of Putative 2-
Isopropylmalate Synthase From Listeria Monocytogenes
Length = 293
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/257 (49%), Positives = 171/257 (66%), Gaps = 10/257 (3%)
Query: 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKE 139
++ FDTTLRDGEQ+PG KEK+ IA QL KLG+D+IEAGFP +S DFE V+ IAK
Sbjct: 6 IQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEAGFPISSPGDFECVKAIAKA 65
Query: 140 VGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTK 199
+ + + GL+RC E DI A EA+K A P+IH F+ATS +H E+KL+ ++
Sbjct: 66 IKHCS---------VTGLARCVEGDIDRAEEALKDAVSPQIHIFLATSDVHXEYKLKXSR 116
Query: 200 QQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGI 259
+V+ + + +AR D V+FSPEDA RSDR FL E + I GAT +NIPDTVG
Sbjct: 117 AEVLASIKHHISYARQ-KFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTVGY 175
Query: 260 TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319
T PTEFG+L D++ ++++ ++HC +DLG +TAN +A GAR+VE TINGIGE
Sbjct: 176 TNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGXATANALAAIENGARRVEGTINGIGE 235
Query: 320 RAGNASLEEVVMAFKCR 336
RAGN +LEEV +A R
Sbjct: 236 RAGNTALEEVAVALHIR 252
>pdb|3IVT|A Chain A, Homocitrate Synthase Lys4 Bound To 2-Og
pdb|3IVT|B Chain B, Homocitrate Synthase Lys4 Bound To 2-Og
pdb|3IVU|A Chain A, Homocitrate Synthase Lys4 Bound To 2-Og
pdb|3IVU|B Chain B, Homocitrate Synthase Lys4 Bound To 2-Og
pdb|3MI3|A Chain A, Homocitrate Synthase Lys4 Bound To Lysine
pdb|3MI3|B Chain B, Homocitrate Synthase Lys4 Bound To Lysine
Length = 423
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 182/410 (44%), Gaps = 29/410 (7%)
Query: 53 KPPPSLYPRITATRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAK 112
KPP + P P +R+ N + ++TLR+GEQ A +++K+ IA+ L
Sbjct: 18 KPPMNGNP--YGPNPSDFLSRV---NNFSIIESTLREGEQFANAFFDTEKKIQIAKALDN 72
Query: 113 LGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172
GVD IE P AS++ + I K G I RC+ D + A E
Sbjct: 73 FGVDYIELTSPVASEQSRQDCEAICK---------LGLKCKILTHIRCHMDDARVAVET- 122
Query: 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSD 232
+ I TS ++ K +++ A ++ F +S G + V FS ED+ RSD
Sbjct: 123 ---GVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIE-VRFSSEDSFRSD 178
Query: 233 RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 292
L + V K+G + I DTVG P + LI ++ G+ + I H ND
Sbjct: 179 LVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLR----GVVSCDIECHFHNDT 234
Query: 293 GLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRH 352
G++ AN AGA ++ +I GIGER G L ++ + Y R
Sbjct: 235 GMAIANAYCALEAGATHIDTSILGIGERNGITPLGALLARMYVTDREYITHKYKLNQLRE 294
Query: 353 IVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSS 412
+ +V + + + + I G AF H++GIH +L + TYEI+ PED G+ R
Sbjct: 295 L---ENLVADAVEVQIPFNNYITGMCAFTHKAGIHAKAILANPSTYEILKPEDFGMSRYV 351
Query: 413 EAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTD 462
G +L+G +A+K R ++L L D Q + K +A+ + D
Sbjct: 352 HVG---SRLTGWNAIKSRAEQLNLHLTDAQAKELTVRIKKLADVRTLAMD 398
>pdb|3IVS|A Chain A, Homocitrate Synthase Lys4
pdb|3IVS|B Chain B, Homocitrate Synthase Lys4
Length = 423
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 180/410 (43%), Gaps = 29/410 (7%)
Query: 53 KPPPSLYPRITATRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAK 112
KPP + P P +R+ N + ++TLR+GEQ A +++K+ IA+ L
Sbjct: 18 KPPXNGNP--YGPNPSDFLSRV---NNFSIIESTLREGEQFANAFFDTEKKIQIAKALDN 72
Query: 113 LGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172
GVD IE P AS++ + I K G I RC+ D + A E
Sbjct: 73 FGVDYIELTSPVASEQSRQDCEAICK---------LGLKCKILTHIRCHXDDARVAVE-- 121
Query: 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSD 232
+ I TS ++ K +++ A ++ F +S G +V FS ED+ RSD
Sbjct: 122 --TGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGI-EVRFSSEDSFRSD 178
Query: 233 RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 292
L + V K+G + I DTVG P + LI ++ G+ + I H ND
Sbjct: 179 LVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLR----GVVSCDIECHFHNDT 234
Query: 293 GLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRH 352
G + AN AGA ++ +I GIGER G L ++ + Y R
Sbjct: 235 GXAIANAYCALEAGATHIDTSILGIGERNGITPLGALLARXYVTDREYITHKYKLNQLRE 294
Query: 353 IVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSS 412
+ +V + + + + I G AF H++GIH +L + TYEI+ PED G R
Sbjct: 295 L---ENLVADAVEVQIPFNNYITGXCAFTHKAGIHAKAILANPSTYEILKPEDFGXSRYV 351
Query: 413 EAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTD 462
G +L+G +A+K R ++L L D Q + K +A+ + D
Sbjct: 352 HVG---SRLTGWNAIKSRAEQLNLHLTDAQAKELTVRIKKLADVRTLAXD 398
>pdb|2ZTJ|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Alpha-Ketoglutarate
pdb|2ZTK|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Homocitrate
pdb|2ZYF|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Magnesuim Ion And
Alpha-Ketoglutarate
Length = 382
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 176/381 (46%), Gaps = 32/381 (8%)
Query: 81 RVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEV 140
++ D+TLR+GEQ A ++++K++IA+ L + G++ IE P AS + + +A
Sbjct: 5 KIIDSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVASPQSRKDAEVLAS-- 62
Query: 141 GNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIH--TFIATSGIHMEHKLRKT 198
GL I+ +A K A + + + ++ +
Sbjct: 63 --------------LGLKAKVVTHIQCRLDAAKVAVETGVQGIDLLFGTSKYLRAPHGRD 108
Query: 199 KQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 257
+++E A+ ++ + R +V FS ED RS+ + L + E + + + DTV
Sbjct: 109 IPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVY-EAVAPYVDRVGLADTV 167
Query: 258 GITMPTEFGKLIADIKANT-PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316
G+ P + L+ +++ P ++ I H ND G + AN AGA V+ TI G
Sbjct: 168 GVATPRQVYALVREVRRVVGPRVD---IEFHGHNDTGCAIANAYEAIEAGATHVDTTILG 224
Query: 317 IGERAGNASLEEVVM-AFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIV 375
IGER G L + + + E++ + +MV G+ + + I
Sbjct: 225 IGERNGITPLGGFLARMYTLQPEYV----RRKYKLEMLPELDRMVARMVGVEIPFNNYIT 280
Query: 376 GANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELG 435
G AF+H++G+H + + YE PE G++R I+ +L+GRHA+K R +ELG
Sbjct: 281 GETAFSHKAGMHLKAIYINPEAYEPYPPEVFGVKRKL---IIASRLTGRHAIKARAEELG 337
Query: 436 YELNDEQLGTIFWHFKAVAEQ 456
+E+L + H KA+A++
Sbjct: 338 LHYGEEELHRVTQHIKALADR 358
>pdb|3A9I|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Lys
Length = 376
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 176/381 (46%), Gaps = 32/381 (8%)
Query: 81 RVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEV 140
++ D+TLR+GEQ A ++++K++IA+ L + G++ IE P AS + + +A
Sbjct: 5 KIIDSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVASPQSRKDAEVLAS-- 62
Query: 141 GNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIH--TFIATSGIHMEHKLRKT 198
GL I+ +A K A + + + ++ +
Sbjct: 63 --------------LGLKAKVVTHIQCRLDAAKVAVETGVQGIDLLFGTSKYLRAPHGRD 108
Query: 199 KQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 257
+++E A+ ++ + R +V FS ED RS+ + L + E + + + DTV
Sbjct: 109 IPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVY-EAVAPYVDRVGLADTV 167
Query: 258 GITMPTEFGKLIADIKANT-PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316
G+ P + L+ +++ P ++ I H ND G + AN AGA V+ TI G
Sbjct: 168 GVATPRQVYALVREVRRVVGPRVD---IEFHGHNDTGCAIANAYEAIEAGATHVDTTILG 224
Query: 317 IGERAGNASLEEVVM-AFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIV 375
IGER G L + + + E++ + +MV G+ + + I
Sbjct: 225 IGERNGITPLGGFLARMYTLQPEYV----RRKYKLEMLPELDRMVARMVGVEIPFNNYIT 280
Query: 376 GANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELG 435
G AF+H++G+H + + YE PE G++R I+ +L+GRHA+K R +ELG
Sbjct: 281 GETAFSHKAGMHLKAIYINPEAYEPYPPEVFGVKRKL---IIASRLTGRHAIKARAEELG 337
Query: 436 YELNDEQLGTIFWHFKAVAEQ 456
+E+L + H KA+A++
Sbjct: 338 LHYGEEELHRVTQHIKALADR 358
>pdb|3BLE|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Malonate
pdb|3BLF|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Pyruvate
pdb|3BLI|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Pyruvate And Acetyl-Coa
Length = 337
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 153/335 (45%), Gaps = 21/335 (6%)
Query: 80 VRVFDTTLRDGEQSPGATLTSKEKLDIAR-QLAKLGVDIIEAGFPAASKEDFEAVRTIAK 138
+ + D TLRDGEQ+ G + ++ EKL+IA+ L KL VD +E SK + E V+ I +
Sbjct: 20 LEILDVTLRDGEQTRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARVSKGELETVQKIME 79
Query: 139 EVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT 198
E I G N+ W +K + ++ S H+E +L KT
Sbjct: 80 WAATEQLTER---IEILGFVDGNK---TVDW--IKDSGAKVLNLLTKGSLHHLEKQLGKT 131
Query: 199 KQQVVEIARSMVKFARSLGCDDVEFSPEDAG---RSDRKFLYEILGEVIKVGATTLNIPD 255
++ ++++A G + ED R+ ++ ++ + K + +PD
Sbjct: 132 PKEFFTDVSFVIEYAIKSGLK-INVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLPD 190
Query: 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 315
T+G+ P E + + + P I H ND LS AN++ AG + + +IN
Sbjct: 191 TLGVLSPEETFQGVDSLIQKYPDIH---FEFHGHNDYDLSVANSLQAIRAGVKGLHASIN 247
Query: 316 GIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIV 375
G+GERAGN LE +V H T IN I AS++VE ++G + ++ IV
Sbjct: 248 GLGERAGNTPLEALVTTI-----HDKSNSKTNINEIAITEASRLVEVFSGKRISANRPIV 302
Query: 376 GANAFAHESGIHQDGMLKHKGTYEIISPEDIGLER 410
G + F +G+H DG K I PE G +R
Sbjct: 303 GEDVFTQTAGVHADGDKKGNLYANPILPERFGRKR 337
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 152/602 (25%), Positives = 246/602 (40%), Gaps = 94/602 (15%)
Query: 71 PNRIPD--PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKE 128
P+R+ D P + V LRDG Q+ ++ K + L ++G IE GFP+AS+
Sbjct: 64 PDRVIDRAPLWCAV---DLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQT 120
Query: 129 DFEAVRTIAKEVGNAVDAESGYVP---VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIA 185
DF+ VR I E G +P I L++C I+ ++A A R +H + +
Sbjct: 121 DFDFVREII---------EQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNS 171
Query: 186 TSGIHMEHKLRKTKQQVVEIA-----RSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEI 239
TS + R + +V IA + + + A+ G E+SPE ++ ++ ++
Sbjct: 172 TSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQV 231
Query: 240 LGEVIKVGATT------LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLG 293
V +V A T N+P TV +T P + I + N E+V++S H ND G
Sbjct: 232 CDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRG 291
Query: 294 LSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHI 353
+ A G AGA ++E + G GER GN L + + R G+ I+ +I
Sbjct: 292 TAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSR------GVDPQIDFSNI 345
Query: 354 VMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLK-------------------- 393
+ VE L V G + SG HQD + K
Sbjct: 346 DEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDADAADCDVDDML 405
Query: 394 HKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLK-----ELGYELNDEQLGTIFW 448
+ Y I P D+G R+ EA I + SG+ + +K L L E I
Sbjct: 406 WQVPYLPIDPRDVG--RTYEAVIRVNSQSGKGGVAYIMKTDHGLSLPRRLQIEFSQVIQK 463
Query: 449 HFKAVAEQKKRVTDADLIALVSDEIFQP----EVVWKLLDMQVTCGTLGLSTATVKLMDA 504
+ A + V+ ++ ++E P E + + +D G TATVK+
Sbjct: 464 IAEGTAGEGGEVSPKEMWDAFAEEYLAPVRPLERIRQHVDAADDDGGTTSITATVKI--- 520
Query: 505 NGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIR----- 559
NG E +G GP+ + A+ + + A +L+Y +A++AG DA A V
Sbjct: 521 NGVETEISGSGNGPLAAFVHALADVGFDVA-VLDYYEHAMSAGDDAQAAAYVEASVTIAS 579
Query: 560 -GEKSQLSTHASTGETV------------------QRTFSGTGAGMDIVVSSVKAYIGAL 600
+ + HAS T+ +T G G I +S++A + A+
Sbjct: 580 PAQPGEAGRHASDPVTIASPAQPGEAGRHASDPVTSKTVWGVGIAPSITTASLRAVVSAV 639
Query: 601 NK 602
N+
Sbjct: 640 NR 641
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 152/602 (25%), Positives = 246/602 (40%), Gaps = 94/602 (15%)
Query: 71 PNRIPD--PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKE 128
P+R+ D P + V LRDG Q+ ++ K + L ++G IE GFP+AS+
Sbjct: 66 PDRVIDRAPLWCAV---DLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQT 122
Query: 129 DFEAVRTIAKEVGNAVDAESGYVP---VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIA 185
DF+ VR I E G +P I L++C I+ ++A A R +H + +
Sbjct: 123 DFDFVREII---------EQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNS 173
Query: 186 TSGIHMEHKLRKTKQQVVEIA-----RSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEI 239
TS + R + +V IA + + + A+ G E+SPE ++ ++ ++
Sbjct: 174 TSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQV 233
Query: 240 LGEVIKVGATT------LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLG 293
V +V A T N+P TV +T P + I + N E+V++S H ND G
Sbjct: 234 CDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRG 293
Query: 294 LSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHI 353
+ A G AGA ++E + G GER GN L + + R G+ I+ +I
Sbjct: 294 TAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSR------GVDPQIDFSNI 347
Query: 354 VMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLK-------------------- 393
+ VE L V G + SG HQD + K
Sbjct: 348 DEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDADAADCDVDDML 407
Query: 394 HKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLK-----ELGYELNDEQLGTIFW 448
+ Y I P D+G R+ EA I + SG+ + +K L L E I
Sbjct: 408 WQVPYLPIDPRDVG--RTYEAVIRVNSQSGKGGVAYIMKTDHGLSLPRRLQIEFSQVIQK 465
Query: 449 HFKAVAEQKKRVTDADLIALVSDEIFQP----EVVWKLLDMQVTCGTLGLSTATVKLMDA 504
+ A + V+ ++ ++E P E + + +D G TATVK+
Sbjct: 466 IAEGTAGEGGEVSPKEMWDAFAEEYLAPVRPLERIRQHVDAADDDGGTTSITATVKI--- 522
Query: 505 NGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIR----- 559
NG E +G GP+ + A+ + + A +L+Y +A++AG DA A V
Sbjct: 523 NGVETEISGSGNGPLAAFVHALADVGFDVA-VLDYYEHAMSAGDDAQAAAYVEASVTIAS 581
Query: 560 -GEKSQLSTHASTGETV------------------QRTFSGTGAGMDIVVSSVKAYIGAL 600
+ + HAS T+ +T G G I +S++A + A+
Sbjct: 582 PAQPGEAGRHASDPVTIASPAQPGEAGRHASDPVTSKTVWGVGIAPSITTASLRAVVSAV 641
Query: 601 NK 602
N+
Sbjct: 642 NR 643
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 148/587 (25%), Positives = 233/587 (39%), Gaps = 95/587 (16%)
Query: 87 LRDGEQS---PGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNA 143
LRDG Q+ P + + D+ L + G IE GFP+AS+ DF+ VR I
Sbjct: 79 LRDGNQALIDPXSPARKRRXFDL---LVRXGYKEIEVGFPSASQTDFDFVREII------ 129
Query: 144 VDAESGYVP---VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQ 200
E G +P I L++C I+ ++A A R +H + +TS + R +
Sbjct: 130 ---EQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRA 186
Query: 201 QVVEIA-----RSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATT---- 250
+V IA + + + A+ G E+SPE ++ ++ ++ V +V A T
Sbjct: 187 EVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAPTPERP 246
Query: 251 --LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 308
N+P TV T P + I N E+V++S H ND G + A G AGA
Sbjct: 247 IIFNLPATVEXTTPNVYADSIEWXSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGAD 306
Query: 309 QVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHV 368
++E + G GER GN L + + R G+ I+ +I + VE L V
Sbjct: 307 RIEGCLFGNGERTGNVCLVTLGLNLFSR------GVDPQIDFSNIDEIRRTVEYCNQLPV 360
Query: 369 QPHKAIVGANAFAHESGIHQDGMLK--------------------HKGTYEIISPEDIGL 408
G + SG HQD + K + Y I P D+G
Sbjct: 361 HERHPYGGDLVYTAFSGSHQDAINKGLDAXKLDADAADCDVDDXLWQVPYLPIDPRDVG- 419
Query: 409 ERSSEAGIVLGKLSGRHALK-----DRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDA 463
R+ EA I + SG+ + D L L E I + A + V+
Sbjct: 420 -RTYEAVIRVNSQSGKGGVAYIXKTDHGLSLPRRLQIEFSQVIQKIAEGTAGEGGEVSPK 478
Query: 464 DLIALVSDEIFQP----EVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPV 519
+ ++E P E + + +D G TATVK+ NG E +G GP+
Sbjct: 479 EXWDAFAEEYLAPVRPLERIRQHVDAADDDGGTTSITATVKI---NGVETEISGSGNGPL 535
Query: 520 DSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIR------GEKSQLSTHASTGE 573
+ A+ + + A +L+Y +A +AG DA A V + + HAS
Sbjct: 536 AAFVHALADVGFDVA-VLDYYEHAXSAGDDAQAAAYVEASVTIASPAQPGEAGRHASDPV 594
Query: 574 TV------------------QRTFSGTGAGMDIVVSSVKAYIGALNK 602
T+ +T G G I +S++A + A+N+
Sbjct: 595 TIASPAQPGEAGRHASDPVTSKTVWGVGIAPSITTASLRAVVSAVNR 641
>pdb|3U6W|A Chain A, Truncated M. Tuberculosis Leua (1-425) Complexed With Kiv
pdb|3U6W|B Chain B, Truncated M. Tuberculosis Leua (1-425) Complexed With Kiv
Length = 427
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 142/322 (44%), Gaps = 30/322 (9%)
Query: 87 LRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDA 146
LRDG Q+ ++ K + L ++G IE GFP+AS+ DF+ VR I
Sbjct: 81 LRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQTDFDFVREII--------- 131
Query: 147 ESGYVP---VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVV 203
E G +P I L++C I+ ++A A R +H + +TS + R + +V
Sbjct: 132 EQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQ 191
Query: 204 EIA-----RSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATT------L 251
IA + + + A+ G E+SPE ++ ++ ++ V +V A T
Sbjct: 192 AIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAPTPERPIIF 251
Query: 252 NIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311
N+P TV +T P + I + N E+V++S H ND G + A G AGA ++E
Sbjct: 252 NLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIE 311
Query: 312 VTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPH 371
+ G GER GN L + + R G+ I+ +I + VE L V
Sbjct: 312 GCLFGNGERTGNVCLVTLGLNLFSR------GVDPQIDFSNIDEIRRTVEYCNQLPVHER 365
Query: 372 KAIVGANAFAHESGIHQDGMLK 393
G + SG HQD + K
Sbjct: 366 HPYGGDLVYTAFSGSHQDAINK 387
>pdb|3HPX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Active Site Domain 1-425 (Truncation Mutant
Delta:426-644)
pdb|3HPX|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Active Site Domain 1-425 (Truncation Mutant
Delta:426-644)
Length = 425
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 142/322 (44%), Gaps = 30/322 (9%)
Query: 87 LRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDA 146
LRDG Q+ ++ K + L ++G IE GFP+AS+ DF+ VR I
Sbjct: 79 LRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQTDFDFVREII--------- 129
Query: 147 ESGYVP---VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVV 203
E G +P I L++C I+ ++A A R +H + +TS + R + +V
Sbjct: 130 EQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQ 189
Query: 204 EIA-----RSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATT------L 251
IA + + + A+ G E+SPE ++ ++ ++ V +V A T
Sbjct: 190 AIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAPTPERPIIF 249
Query: 252 NIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311
N+P TV +T P + I + N E+V++S H ND G + A G AGA ++E
Sbjct: 250 NLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIE 309
Query: 312 VTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPH 371
+ G GER GN L + + R G+ I+ +I + VE L V
Sbjct: 310 GCLFGNGERTGNVCLVTLGLNLFSR------GVDPQIDFSNIDEIRRTVEYCNQLPVHER 363
Query: 372 KAIVGANAFAHESGIHQDGMLK 393
G + SG HQD + K
Sbjct: 364 HPYGGDLVYTAFSGSHQDAINK 385
>pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|B Chain B, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|C Chain C, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|D Chain D, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|E Chain E, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|F Chain F, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|3MP3|A Chain A, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|B Chain B, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|C Chain C, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|D Chain D, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|E Chain E, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|F Chain F, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
Length = 298
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 125/303 (41%), Gaps = 45/303 (14%)
Query: 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTI 136
P V++ + RDG Q+ +++ K+ + L++ G+ +IE F + + +
Sbjct: 3 PKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIET-------TSFVSPKWV 55
Query: 137 AKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLR 196
++G+ + G + G++ +EA A + F A S + + +
Sbjct: 56 -PQMGDHTEVLKG-IQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNIN 113
Query: 197 KTKQQVVEIARSMVKFARS------------LGCD-DVEFSPEDAGRSDRKFLYEILGEV 243
+ ++ + +++K A+S LGC + + SP +KF
Sbjct: 114 CSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFY------- 166
Query: 244 IKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303
+G +++ DT+G+ P +++ + P ++ HC + G + ANT+
Sbjct: 167 -SMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVP---LAALAVHCHDTYGQALANTLMAL 222
Query: 304 CAGARQVEVTINGIG------ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS 357
G V+ ++ G+G +GN + E++V + G H TG+N + ++ A
Sbjct: 223 QMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIH------TGVNLQKLLEAG 276
Query: 358 KMV 360
+
Sbjct: 277 NFI 279
>pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|B Chain B, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|C Chain C, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|D Chain D, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181
Length = 307
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 63/319 (19%)
Query: 75 PDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVR 134
P P V + + RDG Q+ + +++K+ QL++ G+ IE K A+R
Sbjct: 2 PYPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKW-IPALR 60
Query: 135 TIAKEVGNAVDAESG-----YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGI 189
A +V +D E G VP GL E I A F + S
Sbjct: 61 D-AIDVAKGIDREKGVTYAALVPNQRGLENALEGGINEA------------CVFXSASET 107
Query: 190 HMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG-------- 241
H + K+ + + I + V + A + R +L + G
Sbjct: 108 HNRKNINKSTSESLHILK------------QVNNDAQKANLTTRAYLSTVFGCPYEKDVP 155
Query: 242 --EVIKV-------GATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 292
+VI++ G + L++ DT+G P + ++ + A P + I+ H +
Sbjct: 156 IEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQ---IALHFHDTR 212
Query: 293 GLSTANTIAGACAGARQVEVTINGIG------ERAGNASLEEVVMAFKCRGEHILGGLYT 346
G + AN + G + + G+G +GNA+ E++V + + T
Sbjct: 213 GTALANXVTALQXGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYXLEQX------DIKT 266
Query: 347 GINTRHIVMASKMVEEYTG 365
+ ++ A+K +EE G
Sbjct: 267 NVKLEKLLSAAKWIEEKXG 285
>pdb|3MP4|A Chain A, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|B Chain B, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|C Chain C, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|D Chain D, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|E Chain E, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|F Chain F, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP5|A Chain A, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|B Chain B, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|C Chain C, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|D Chain D, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|E Chain E, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|F Chain F, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
Length = 298
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/303 (18%), Positives = 124/303 (40%), Gaps = 45/303 (14%)
Query: 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTI 136
P V++ + DG Q+ +++ K+ + L++ G+ +IE F + + +
Sbjct: 3 PKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIET-------TSFVSPKWV 55
Query: 137 AKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLR 196
++G+ + G + G++ +EA A + F A S + + +
Sbjct: 56 -PQMGDHTEVLKG-IQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNIN 113
Query: 197 KTKQQVVEIARSMVKFARS------------LGCD-DVEFSPEDAGRSDRKFLYEILGEV 243
+ ++ + +++K A+S LGC + + SP +KF
Sbjct: 114 CSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFY------- 166
Query: 244 IKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303
+G +++ DT+G+ P +++ + P ++ HC + G + ANT+
Sbjct: 167 -SMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVP---LAALAVHCHDTYGQALANTLMAL 222
Query: 304 CAGARQVEVTINGIG------ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS 357
G V+ ++ G+G +GN + E++V + G H TG+N + ++ A
Sbjct: 223 QMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIH------TGVNLQKLLEAG 276
Query: 358 KMV 360
+
Sbjct: 277 NFI 279
>pdb|1NVM|A Chain A, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|C Chain C, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|E Chain E, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|G Chain G, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
Length = 345
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 50/250 (20%)
Query: 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEA----GFPAAS-------KEDF 130
+ D TLRDG + T + IAR L K VD IE G +S D
Sbjct: 11 ISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDL 70
Query: 131 EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIH 190
E + +A E+ +A A ++ G+ + D+K A++A A+ R+ T + +
Sbjct: 71 EYIEAVAGEISHAQIA----TLLLPGIGSVH--DLKNAYQAG--ARVVRVATHCTEADVS 122
Query: 191 MEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK-VGAT 249
+H +++AR+LG D V F K + G++++ GAT
Sbjct: 123 KQH----------------IEYARNLGMDTVGFLMMSHMIPAEKLAEQ--GKLMESYGAT 164
Query: 250 TLNIPDTVGITMPTEFGKLIADIKANTPGIENVV-----ISTHCQNDLGLSTANTIAGAC 304
+ + D+ G + DI+ + V+ + H ++L L AN+I
Sbjct: 165 CIYMADSGGAMS-------MNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVE 217
Query: 305 AGARQVEVTI 314
G +V+ ++
Sbjct: 218 EGCDRVDASL 227
>pdb|3GYE|A Chain A, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GYE|B Chain B, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GZ3|A Chain A, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|3GZ3|B Chain B, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|4EF8|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF8|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF9|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
pdb|4EF9|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
Length = 354
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 86/224 (38%), Gaps = 39/224 (17%)
Query: 161 NERDIKTAWEAVK--YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC 218
N D A+ A + Y K+P F++ SG+ M + K+ V +L C
Sbjct: 109 NGFDFYLAYAAEQHDYGKKP---LFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSC 165
Query: 219 DDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFG----KLIADIKA 274
+V P+ A D + + L V +V P + G+ MP F A+I
Sbjct: 166 PNVPGKPQVA--YDFDAMRQCLTAVSEV------YPHSFGVKMPPYFDFAHFDAAAEILN 217
Query: 275 NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI---NGIGERAGNASLEEV-- 329
P ++ + C N +G G A V I G G G L
Sbjct: 218 EFPKVQFIT----CINSIG-------NGLVIDAETESVVIKPKQGFGGLGGRYVLPTALA 266
Query: 330 -VMAF--KCRGEHIL--GGLYTGINT-RHIVMASKMVEEYTGLH 367
+ AF +C G+ I GG+YTG + H++ + MV+ T L
Sbjct: 267 NINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQ 310
>pdb|3MHU|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MHU|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MJY|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3MJY|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3TQ0|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|3TQ0|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
Length = 346
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 86/224 (38%), Gaps = 39/224 (17%)
Query: 161 NERDIKTAWEAVK--YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC 218
N D A+ A + Y K+P F++ SG+ M + K+ V +L C
Sbjct: 109 NGFDFYLAYAAEQHDYGKKP---LFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSC 165
Query: 219 DDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFG----KLIADIKA 274
+V P+ A D + + L V +V P + G+ MP F A+I
Sbjct: 166 PNVPGKPQVA--YDFDAMRQCLTAVSEV------YPHSFGVKMPPYFDFAHFDAAAEILN 217
Query: 275 NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI---NGIGERAGNASLEEV-- 329
P ++ + C N +G G A V I G G G L
Sbjct: 218 EFPKVQFIT----CINSIG-------NGLVIDAETESVVIKPKQGFGGLGGRYVLPTALA 266
Query: 330 -VMAF--KCRGEHIL--GGLYTGINT-RHIVMASKMVEEYTGLH 367
+ AF +C G+ I GG+YTG + H++ + MV+ T L
Sbjct: 267 NINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQ 310
>pdb|1VHQ|A Chain A, Crystal Structure Of Enhancing Lycopene Biosynthesis
Protein 2
pdb|1VHQ|B Chain B, Crystal Structure Of Enhancing Lycopene Biosynthesis
Protein 2
Length = 232
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 476 PEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPAT 535
P + K+ D + T+G T ++++ G EHV C VD K IV PA
Sbjct: 143 PAXLPKIFDFPLRL-TIGTDIDTAEVLEEXGAEHVPCPVDDIVVDEDNK----IVTTPAY 197
Query: 536 LLEYSMNAVTAGIDAIATTRVLIRGEK 562
L ++ +GID + +RVL+ E+
Sbjct: 198 XLAQNIAEAASGIDKL-VSRVLVLAEE 223
>pdb|1OY1|A Chain A, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|B Chain B, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|C Chain C, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|D Chain D, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
Length = 228
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 476 PEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPAT 535
P + K+ D + T+G T ++++ G EHV C VD K IV PA
Sbjct: 141 PAXLPKIFDFPLRL-TIGTDIDTAEVLEEXGAEHVPCPVDDIVVDEDNK----IVTTPAY 195
Query: 536 LLEYSMNAVTAGIDAIATTRVLIRGE 561
L ++ +GID + +RVL+ E
Sbjct: 196 XLAQNIAEAASGIDKL-VSRVLVLAE 220
>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
pdb|2NX9|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
Length = 464
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 26/267 (9%)
Query: 80 VRVFDTTLRDGEQSPGAT-LTSKEKLDIARQLAKLGVDIIE----AGFPAASK---ED-F 130
V V D LRD QS AT L + L IA+QL ++G +E A F + + ED +
Sbjct: 8 VGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPW 67
Query: 131 EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIH 190
+ +R + + + N + G + + T E F A + +
Sbjct: 68 QRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDV- 126
Query: 191 MEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250
+ QQ ++ + M A+ C SP + + ++ ++ ++G +
Sbjct: 127 ------RNMQQALQAVKKMGAHAQGTLC--YTTSPV----HNLQTWVDVAQQLAELGVDS 174
Query: 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310
+ + D GI P +L++ +K +V + HC + GL+ + AG +V
Sbjct: 175 IALKDMAGILTPYAAEELVSTLKKQV----DVELHLHCHSTAGLADMTLLKAIEAGVDRV 230
Query: 311 EVTINGIGERAGNASLEEVVMAFKCRG 337
+ I+ + G+ + E +V + G
Sbjct: 231 DTAISSMSGTYGHPATESLVATLQGTG 257
>pdb|3DXI|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Putative
Aldolase (Bvu_2661) From Bacteroides Vulgatus
pdb|3DXI|B Chain B, Crystal Structure Of The N-Terminal Domain Of A Putative
Aldolase (Bvu_2661) From Bacteroides Vulgatus
Length = 320
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 255 DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314
D+ G P E L+ +++ T +V + H ++L L N+I G ++ TI
Sbjct: 164 DSFGGITPKEVKNLLKEVRKYT----HVPVGFHGHDNLQLGLINSITAIDDGIDFIDATI 219
Query: 315 NGIGERAGNASLE 327
G G AGN E
Sbjct: 220 TGXGRGAGNLKXE 232
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 64 ATRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFP 123
A RP Y I DPNY +D +R E + GA + + R + K GVD P
Sbjct: 444 AIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFLMKRCIEK-GVD------P 496
Query: 124 AASKEDFEAVR 134
A K+ E+ R
Sbjct: 497 ATLKDYIESFR 507
>pdb|3TRO|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
pdb|3TRO|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
Length = 354
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 85/224 (37%), Gaps = 39/224 (17%)
Query: 161 NERDIKTAWEAVK--YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC 218
N D A+ A + Y K+P F++ SG+ M + K+ V +L C
Sbjct: 109 NGFDFYLAYAAEQHDYGKKP---LFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSC 165
Query: 219 DDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMP----TEFGKLIADIKA 274
+V P+ A D + + L V +V P + G+ MP A+I
Sbjct: 166 PNVPGKPQVA--YDFDAMRQCLTAVSEV------YPHSFGVKMPPYFAFAHFDAAAEILN 217
Query: 275 NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI---NGIGERAGNASLEEV-- 329
P ++ + C N +G G A V I G G G L
Sbjct: 218 EFPKVQFIT----CINSIG-------NGLVIDAETESVVIKPKQGFGGLGGRYVLPTALA 266
Query: 330 -VMAF--KCRGEHIL--GGLYTGINT-RHIVMASKMVEEYTGLH 367
+ AF +C G+ I GG+YTG + H++ + MV+ T L
Sbjct: 267 NINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQ 310
>pdb|3TJX|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
pdb|3TJX|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
Length = 354
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 85/224 (37%), Gaps = 39/224 (17%)
Query: 161 NERDIKTAWEAVK--YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC 218
N D A+ A + Y K+P F++ SG+ M + K+ V +L C
Sbjct: 109 NGFDFYLAYAAEQHDYGKKP---LFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSC 165
Query: 219 DDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMP----TEFGKLIADIKA 274
+V P+ A D + + L V +V P + G+ MP A+I
Sbjct: 166 PNVPGKPQVA--YDFDAMRQCLTAVSEV------YPHSFGVKMPPYFDFAAFDAAAEILN 217
Query: 275 NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI---NGIGERAGNASLEEV-- 329
P ++ + C N +G G A V I G G G L
Sbjct: 218 EFPKVQFIT----CINSIG-------NGLVIDAETESVVIKPKQGFGGLGGRYVLPTALA 266
Query: 330 -VMAF--KCRGEHIL--GGLYTGINT-RHIVMASKMVEEYTGLH 367
+ AF +C G+ I GG+YTG + H++ + MV+ T L
Sbjct: 267 NINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQ 310
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 187 SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246
+ + ++H L+K V+E+ R MV+ +S+G + +E EDA KF + LG+ +KV
Sbjct: 45 TKVLLQHPLKKL--YVIELDREMVENLKSIGDERLEVINEDAS----KFPFCSLGKELKV 98
Query: 247 GATTLNIPDTVG 258
N+P V
Sbjct: 99 VG---NLPYNVA 107
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 187 SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246
+ + ++H L+K V+E+ R MV+ +S+G + +E EDA KF + LG+ +KV
Sbjct: 46 TKVLLQHPLKKL--YVIELDREMVENLKSIGDERLEVINEDAS----KFPFCSLGKELKV 99
Query: 247 GATTLNIPDTVG 258
N+P V
Sbjct: 100 VG---NLPYNVA 108
>pdb|2BI4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BI4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BL4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BL4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
Length = 392
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 426 ALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDM 485
AL D +K GY+ KA+ K + ++A V+D++ + W + D
Sbjct: 30 ALTDEVKRRGYQ-------------KALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDG 76
Query: 486 QVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEP 533
V T+ + + + +G +++ G P D+ KA+ +I P
Sbjct: 77 VVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTC-KAIGIISNNP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,552,520
Number of Sequences: 62578
Number of extensions: 741577
Number of successful extensions: 2727
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2672
Number of HSP's gapped (non-prelim): 39
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)