Query 006969
Match_columns 623
No_of_seqs 308 out of 2145
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 17:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02321 2-isopropylmalate syn 100.0 8E-135 2E-139 1136.1 68.0 566 48-614 55-620 (632)
2 TIGR00973 leuA_bact 2-isopropy 100.0 6E-122 1E-126 1019.2 61.3 493 79-601 1-494 (494)
3 PRK00915 2-isopropylmalate syn 100.0 7E-122 2E-126 1023.9 62.1 504 77-610 2-507 (513)
4 PRK09389 (R)-citramalate synth 100.0 7E-121 2E-125 1008.3 59.4 484 79-604 2-488 (488)
5 PRK03739 2-isopropylmalate syn 100.0 9E-119 2E-123 1002.8 62.3 497 78-604 29-551 (552)
6 TIGR00970 leuA_yeast 2-isoprop 100.0 3E-118 5E-123 1001.2 64.0 504 78-604 25-563 (564)
7 TIGR00977 LeuA_rel 2-isopropyl 100.0 1E-118 3E-123 996.3 61.0 494 79-606 1-519 (526)
8 KOG2367 Alpha-isopropylmalate 100.0 8E-119 2E-123 941.6 44.9 508 71-606 49-557 (560)
9 PRK12344 putative alpha-isopro 100.0 1E-114 3E-119 965.6 59.5 498 77-607 3-519 (524)
10 PLN03228 methylthioalkylmalate 100.0 3.3E-97 7E-102 815.6 46.5 408 64-471 69-476 (503)
11 COG0119 LeuA Isopropylmalate/h 100.0 9.2E-95 2E-99 780.3 44.4 402 79-502 2-408 (409)
12 PRK11858 aksA trans-homoaconit 100.0 2E-91 4.4E-96 754.1 43.0 371 77-474 2-373 (378)
13 TIGR02660 nifV_homocitr homoci 100.0 1.7E-90 3.7E-95 744.3 41.6 362 80-468 2-364 (365)
14 TIGR02090 LEU1_arch isopropylm 100.0 3.1E-89 6.7E-94 733.5 40.7 362 80-468 1-362 (363)
15 PRK14847 hypothetical protein; 100.0 1.2E-72 2.6E-77 590.2 37.3 298 64-378 22-331 (333)
16 cd07945 DRE_TIM_CMS Leptospira 100.0 7.8E-62 1.7E-66 504.0 33.6 274 83-375 1-280 (280)
17 cd07942 DRE_TIM_LeuA Mycobacte 100.0 1.2E-61 2.7E-66 502.0 33.5 269 82-362 4-284 (284)
18 cd07948 DRE_TIM_HCS Saccharomy 100.0 8.3E-60 1.8E-64 484.5 32.6 262 80-362 1-262 (262)
19 PLN02746 hydroxymethylglutaryl 100.0 3.6E-59 7.7E-64 493.8 34.0 270 77-372 44-332 (347)
20 cd07939 DRE_TIM_NifV Streptomy 100.0 1.2E-58 2.6E-63 476.1 32.1 258 82-362 1-258 (259)
21 TIGR02146 LysS_fung_arch homoc 100.0 6E-58 1.3E-62 487.8 38.6 343 82-451 1-343 (344)
22 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 2.4E-58 5.2E-63 476.1 32.9 268 82-362 1-268 (268)
23 PRK05692 hydroxymethylglutaryl 100.0 1.9E-57 4.2E-62 472.7 34.0 267 77-369 2-287 (287)
24 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 2.6E-57 5.6E-62 469.5 31.8 264 82-362 1-273 (273)
25 cd07947 DRE_TIM_Re_CS Clostrid 100.0 4.7E-56 1E-60 459.9 31.5 260 80-362 1-279 (279)
26 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 1.2E-55 2.6E-60 456.9 31.4 255 82-362 1-274 (274)
27 cd03174 DRE_TIM_metallolyase D 100.0 6.4E-53 1.4E-57 432.7 30.2 257 83-362 1-265 (265)
28 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 2E-52 4.4E-57 431.1 27.8 247 82-364 1-260 (266)
29 PF00682 HMGL-like: HMGL-like 100.0 1.3E-52 2.8E-57 425.1 25.8 236 88-336 1-236 (237)
30 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 2E-52 4.3E-57 433.4 27.4 246 82-365 1-270 (275)
31 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 1E-51 2.3E-56 425.6 30.6 246 80-362 1-260 (263)
32 PRK14040 oxaloacetate decarbox 100.0 3.4E-50 7.5E-55 452.2 34.2 311 78-454 3-329 (593)
33 TIGR01108 oadA oxaloacetate de 100.0 2.3E-49 5E-54 445.2 33.8 297 82-454 1-323 (582)
34 PRK08195 4-hyroxy-2-oxovalerat 100.0 3.6E-49 7.8E-54 419.0 32.3 247 78-362 2-264 (337)
35 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 9.9E-49 2.2E-53 414.8 32.1 246 79-362 2-263 (333)
36 PRK09282 pyruvate carboxylase 100.0 4.2E-48 9E-53 436.2 36.7 301 78-454 2-328 (592)
37 PRK12330 oxaloacetate decarbox 100.0 6.3E-48 1.4E-52 423.3 30.9 278 78-392 3-317 (499)
38 PRK12331 oxaloacetate decarbox 100.0 1.2E-47 2.6E-52 419.5 29.3 260 78-365 2-275 (448)
39 PRK14041 oxaloacetate decarbox 100.0 7.1E-46 1.5E-50 406.2 31.0 253 79-365 2-274 (467)
40 PRK12581 oxaloacetate decarbox 100.0 2.8E-41 6.1E-46 367.9 33.1 255 78-366 11-285 (468)
41 PRK12999 pyruvate carboxylase; 100.0 3.9E-42 8.5E-47 411.7 26.8 274 73-383 526-832 (1146)
42 PRK14042 pyruvate carboxylase 100.0 2.7E-39 6E-44 362.6 33.5 265 77-365 1-275 (596)
43 KOG2368 Hydroxymethylglutaryl- 100.0 3.7E-34 8.1E-39 277.8 24.5 271 76-370 15-302 (316)
44 TIGR01235 pyruv_carbox pyruvat 100.0 3.6E-34 7.8E-39 342.0 24.8 283 77-383 528-830 (1143)
45 COG5016 Pyruvate/oxaloacetate 100.0 1.8E-31 3.8E-36 278.4 25.8 313 77-456 3-333 (472)
46 PF08502 LeuA_dimer: LeuA allo 100.0 1.9E-29 4E-34 234.6 19.1 133 459-604 1-133 (133)
47 COG1038 PycA Pyruvate carboxyl 99.8 4.1E-20 9E-25 205.2 20.9 275 67-366 523-816 (1149)
48 TIGR02146 LysS_fung_arch homoc 99.7 4.8E-25 1E-29 235.0 -44.3 264 185-471 77-341 (344)
49 KOG0369 Pyruvate carboxylase [ 99.7 1.2E-16 2.5E-21 174.8 18.4 265 78-366 558-841 (1176)
50 PRK07028 bifunctional hexulose 98.4 6.1E-06 1.3E-10 91.4 17.6 169 96-311 11-188 (430)
51 PLN02591 tryptophan synthase 98.0 0.00077 1.7E-08 69.5 19.6 174 99-310 14-215 (250)
52 TIGR00262 trpA tryptophan synt 98.0 0.001 2.3E-08 68.8 20.6 174 99-310 22-224 (256)
53 TIGR00423 radical SAM domain p 97.9 0.0012 2.6E-08 70.1 21.5 221 97-336 35-295 (309)
54 TIGR03700 mena_SCO4494 putativ 97.9 0.00088 1.9E-08 72.4 19.3 223 97-337 78-338 (351)
55 CHL00200 trpA tryptophan synth 97.9 0.00053 1.2E-08 71.2 16.9 173 99-310 27-228 (263)
56 TIGR03699 mena_SCO4550 menaqui 97.8 0.0014 3E-08 70.5 19.9 221 97-336 71-326 (340)
57 PRK08445 hypothetical protein; 97.8 0.0033 7.1E-08 68.0 21.4 221 96-337 71-332 (348)
58 TIGR03551 F420_cofH 7,8-dideme 97.8 0.0029 6.3E-08 68.2 20.7 220 96-336 68-331 (343)
59 PRK13111 trpA tryptophan synth 97.7 0.0018 3.8E-08 67.2 17.2 159 99-290 24-211 (258)
60 PRK07360 FO synthase subunit 2 97.3 0.025 5.4E-07 61.7 20.9 220 96-337 89-354 (371)
61 PRK13125 trpA tryptophan synth 97.3 0.035 7.6E-07 57.0 20.1 175 98-310 15-211 (244)
62 PRK08444 hypothetical protein; 97.2 0.022 4.8E-07 61.8 19.2 222 96-337 78-337 (353)
63 PF00290 Trp_syntA: Tryptophan 97.2 0.0088 1.9E-07 62.0 15.1 174 99-310 22-223 (259)
64 COG0159 TrpA Tryptophan syntha 97.2 0.01 2.2E-07 61.4 15.3 178 99-316 29-233 (265)
65 cd04726 KGPDC_HPS 3-Keto-L-gul 97.0 0.032 6.9E-07 55.0 16.5 168 98-310 10-183 (202)
66 PRK05926 hypothetical protein; 97.0 0.034 7.4E-07 60.7 17.8 200 95-316 96-331 (370)
67 TIGR03128 RuMP_HxlA 3-hexulose 97.0 0.023 5E-07 56.4 15.2 170 98-312 9-185 (206)
68 PRK07094 biotin synthase; Prov 96.9 0.11 2.4E-06 55.3 20.7 196 97-314 69-281 (323)
69 cd00945 Aldolase_Class_I Class 96.9 0.22 4.7E-06 48.3 20.9 179 99-310 11-198 (201)
70 PLN02389 biotin synthase 96.9 0.15 3.2E-06 56.0 21.4 194 97-310 115-326 (379)
71 PRK15108 biotin synthase; Prov 96.8 0.39 8.4E-06 52.0 24.2 219 98-337 76-309 (345)
72 cd04724 Tryptophan_synthase_al 96.7 0.068 1.5E-06 54.9 16.7 175 99-310 12-212 (242)
73 PRK06256 biotin synthase; Vali 96.6 0.37 8.1E-06 51.6 21.9 211 97-330 90-315 (336)
74 PRK05927 hypothetical protein; 96.6 0.074 1.6E-06 57.7 16.5 208 96-315 74-306 (350)
75 TIGR00433 bioB biotin syntheta 96.6 0.78 1.7E-05 48.0 23.8 214 97-330 61-289 (296)
76 PRK06552 keto-hydroxyglutarate 96.5 0.21 4.5E-06 50.5 17.8 156 99-310 23-180 (213)
77 PRK13397 3-deoxy-7-phosphohept 96.4 0.3 6.4E-06 50.5 18.3 184 98-316 26-224 (250)
78 PRK13209 L-xylulose 5-phosphat 96.3 0.12 2.6E-06 53.7 15.3 202 97-338 20-246 (283)
79 PRK08508 biotin synthase; Prov 96.2 0.41 8.8E-06 50.2 19.1 196 98-310 40-247 (279)
80 TIGR03550 F420_cofG 7,8-dideme 96.1 0.24 5.2E-06 53.0 16.9 226 95-337 32-294 (322)
81 PRK09613 thiH thiamine biosynt 96.1 1.4 3.1E-05 49.6 23.5 207 96-319 113-348 (469)
82 PRK06245 cofG FO synthase subu 95.9 0.98 2.1E-05 48.5 20.3 222 97-337 40-298 (336)
83 TIGR01163 rpe ribulose-phospha 95.8 1.4 3.1E-05 43.4 19.7 173 97-310 7-190 (210)
84 PRK05301 pyrroloquinoline quin 95.7 0.81 1.8E-05 49.8 19.2 141 96-254 44-189 (378)
85 PRK13307 bifunctional formalde 95.7 0.21 4.6E-06 54.8 14.4 170 98-310 182-355 (391)
86 PRK05718 keto-hydroxyglutarate 95.7 0.28 6E-06 49.5 14.2 151 98-307 24-177 (212)
87 PRK09234 fbiC FO synthase; Rev 95.6 0.78 1.7E-05 55.3 20.1 202 94-315 553-790 (843)
88 PRK13361 molybdenum cofactor b 95.6 0.4 8.7E-06 51.4 16.2 141 97-251 44-187 (329)
89 COG0269 SgbH 3-hexulose-6-phos 95.6 0.24 5.1E-06 49.8 13.0 174 96-310 11-189 (217)
90 cd00739 DHPS DHPS subgroup of 95.5 1.3 2.7E-05 46.1 18.8 184 94-310 17-241 (257)
91 PRK09240 thiH thiamine biosynt 95.5 0.97 2.1E-05 49.4 18.8 169 96-279 102-292 (371)
92 TIGR02109 PQQ_syn_pqqE coenzym 95.5 0.6 1.3E-05 50.4 16.9 140 97-253 36-179 (358)
93 cd00452 KDPG_aldolase KDPG and 95.5 1.6 3.4E-05 43.0 18.5 156 99-311 14-169 (190)
94 COG2876 AroA 3-deoxy-D-arabino 95.4 0.49 1.1E-05 48.9 14.9 177 80-275 30-280 (286)
95 PRK09856 fructoselysine 3-epim 95.4 0.76 1.7E-05 47.4 17.0 143 165-338 92-240 (275)
96 TIGR01182 eda Entner-Doudoroff 95.4 0.61 1.3E-05 46.8 15.5 154 98-310 17-173 (204)
97 cd00019 AP2Ec AP endonuclease 95.4 1.5 3.2E-05 45.5 19.0 212 98-337 10-249 (279)
98 PRK09997 hydroxypyruvate isome 95.3 0.66 1.4E-05 47.6 16.1 186 104-338 18-233 (258)
99 TIGR02320 PEP_mutase phosphoen 95.3 2 4.4E-05 45.3 19.8 164 161-337 90-262 (285)
100 cd00331 IGPS Indole-3-glycerol 95.3 1.6 3.5E-05 43.6 18.5 168 99-310 29-198 (217)
101 TIGR03234 OH-pyruv-isom hydrox 95.3 1.5 3.2E-05 44.8 18.4 187 98-338 14-232 (254)
102 TIGR02320 PEP_mutase phosphoen 95.2 0.81 1.7E-05 48.3 16.2 110 197-313 61-189 (285)
103 PRK13398 3-deoxy-7-phosphohept 95.1 1.1 2.5E-05 46.7 16.9 180 98-315 38-235 (266)
104 PTZ00413 lipoate synthase; Pro 95.0 2.1 4.5E-05 46.9 18.8 167 96-273 175-359 (398)
105 COG0502 BioB Biotin synthase a 95.0 2.9 6.2E-05 45.1 19.8 221 95-335 81-314 (335)
106 TIGR02351 thiH thiazole biosyn 95.0 1.2 2.6E-05 48.6 17.4 169 97-279 102-291 (366)
107 TIGR00542 hxl6Piso_put hexulos 95.0 2.7 5.8E-05 43.6 19.4 201 97-338 15-241 (279)
108 PRK13210 putative L-xylulose 5 94.9 0.66 1.4E-05 48.0 14.7 208 97-338 15-247 (284)
109 TIGR01496 DHPS dihydropteroate 94.9 1.9 4.2E-05 44.7 18.0 131 95-256 17-171 (257)
110 PRK06801 hypothetical protein; 94.8 4 8.7E-05 43.1 20.2 181 97-312 25-232 (286)
111 TIGR01769 GGGP geranylgeranylg 94.8 4.1 9E-05 40.9 19.2 174 101-310 11-202 (205)
112 PRK09140 2-dehydro-3-deoxy-6-p 94.8 1.8 3.9E-05 43.5 16.7 157 98-310 19-176 (206)
113 PRK06267 hypothetical protein; 94.7 3.1 6.7E-05 45.2 19.7 206 97-330 62-284 (350)
114 TIGR03470 HpnH hopanoid biosyn 94.7 1.1 2.4E-05 47.9 16.0 159 97-275 58-228 (318)
115 TIGR01859 fruc_bis_ald_ fructo 94.7 3.9 8.4E-05 43.1 19.8 184 97-312 23-229 (282)
116 PRK12928 lipoyl synthase; Prov 94.6 0.79 1.7E-05 48.5 14.5 166 95-273 84-268 (290)
117 PRK00507 deoxyribose-phosphate 94.6 4.1 8.8E-05 41.4 19.0 185 95-313 16-208 (221)
118 PRK06015 keto-hydroxyglutarate 94.6 1.7 3.7E-05 43.5 15.9 152 98-308 13-167 (201)
119 PRK07114 keto-hydroxyglutarate 94.4 1.1 2.4E-05 45.6 14.4 158 98-310 24-185 (222)
120 cd00959 DeoC 2-deoxyribose-5-p 94.4 3.1 6.6E-05 41.5 17.4 180 97-311 13-201 (203)
121 cd04740 DHOD_1B_like Dihydroor 94.4 3.2 6.9E-05 43.6 18.5 144 152-313 91-260 (296)
122 cd02810 DHOD_DHPD_FMN Dihydroo 94.3 4.7 0.0001 42.1 19.4 98 152-257 100-199 (289)
123 PRK07998 gatY putative fructos 94.2 5.7 0.00012 41.9 19.6 182 97-311 25-227 (283)
124 PRK12595 bifunctional 3-deoxy- 94.2 1.1 2.3E-05 48.9 14.7 178 99-314 130-325 (360)
125 KOG4175 Tryptophan synthase al 94.2 5.1 0.00011 40.0 17.6 152 99-278 30-207 (268)
126 PRK07709 fructose-bisphosphate 94.1 6.7 0.00015 41.5 20.0 182 97-311 25-231 (285)
127 PRK09196 fructose-1,6-bisphosp 94.1 4.8 0.0001 43.6 19.2 202 88-311 14-275 (347)
128 PRK01060 endonuclease IV; Prov 94.1 7.4 0.00016 40.2 20.3 206 104-337 15-250 (281)
129 PLN02951 Molybderin biosynthes 93.8 4.8 0.0001 44.1 19.0 169 96-277 88-264 (373)
130 PRK07315 fructose-bisphosphate 93.8 8.4 0.00018 40.9 20.1 185 97-312 25-231 (293)
131 TIGR03249 KdgD 5-dehydro-4-deo 93.8 7.6 0.00016 41.0 19.8 196 97-335 22-224 (296)
132 PRK09989 hypothetical protein; 93.7 2 4.3E-05 44.1 15.0 186 104-338 18-233 (258)
133 cd00947 TBP_aldolase_IIB Tagat 93.6 10 0.00022 39.9 20.1 183 97-312 20-225 (276)
134 PRK11613 folP dihydropteroate 93.5 6.1 0.00013 41.7 18.3 162 80-273 18-205 (282)
135 PRK13396 3-deoxy-7-phosphohept 93.3 5.9 0.00013 43.1 18.2 181 96-315 110-310 (352)
136 PLN02428 lipoic acid synthase 93.3 2.9 6.4E-05 45.3 15.9 160 96-271 128-309 (349)
137 TIGR00126 deoC deoxyribose-pho 93.3 6.8 0.00015 39.5 17.6 185 95-313 12-204 (211)
138 TIGR03581 EF_0839 conserved hy 93.2 3.9 8.6E-05 41.2 15.3 159 98-273 38-235 (236)
139 COG0800 Eda 2-keto-3-deoxy-6-p 93.1 0.67 1.4E-05 46.6 9.9 155 98-310 22-178 (211)
140 COG1060 ThiH Thiamine biosynth 93.0 5.4 0.00012 43.7 17.6 231 94-337 86-350 (370)
141 PRK08185 hypothetical protein; 93.0 14 0.0003 39.0 21.9 182 97-311 20-226 (283)
142 TIGR01496 DHPS dihydropteroate 93.0 0.73 1.6E-05 47.9 10.4 84 221-313 6-102 (257)
143 TIGR02313 HpaI-NOT-DapA 2,4-di 93.0 9.9 0.00021 40.2 19.1 196 97-335 17-221 (294)
144 PRK00164 moaA molybdenum cofac 92.9 3.7 8E-05 43.8 16.0 141 96-249 47-189 (331)
145 COG2896 MoaA Molybdenum cofact 92.8 4.4 9.6E-05 43.4 16.1 144 97-257 42-192 (322)
146 COG0274 DeoC Deoxyribose-phosp 92.7 3.5 7.6E-05 41.9 14.3 97 237-337 80-181 (228)
147 PF01261 AP_endonuc_2: Xylose 92.6 0.062 1.3E-06 52.3 1.9 165 107-293 1-196 (213)
148 PF04131 NanE: Putative N-acet 92.6 0.5 1.1E-05 46.7 8.1 71 238-319 55-125 (192)
149 cd00423 Pterin_binding Pterin 92.5 7.3 0.00016 40.3 17.1 130 95-253 18-171 (258)
150 PF04055 Radical_SAM: Radical 92.5 2.1 4.5E-05 39.3 11.9 137 95-242 25-165 (166)
151 TIGR03586 PseI pseudaminic aci 92.5 2.4 5.2E-05 45.6 13.7 140 107-275 103-253 (327)
152 PF01081 Aldolase: KDPG and KH 92.5 1.5 3.3E-05 43.8 11.4 155 98-310 17-173 (196)
153 TIGR02317 prpB methylisocitrat 92.4 1.8 4E-05 45.6 12.6 109 197-311 56-179 (285)
154 cd00377 ICL_PEPM Members of th 92.4 2.5 5.5E-05 43.4 13.4 111 197-312 52-179 (243)
155 TIGR01361 DAHP_synth_Bsub phos 92.4 1.8 3.9E-05 45.1 12.3 180 96-315 34-233 (260)
156 cd04722 TIM_phosphate_binding 92.3 10 0.00022 35.9 17.3 174 101-312 12-198 (200)
157 cd00954 NAL N-Acetylneuraminic 92.3 17 0.00036 38.2 22.7 196 97-335 17-221 (288)
158 cd00951 KDGDH 5-dehydro-4-deox 92.3 13 0.00028 39.1 18.9 197 97-335 17-219 (289)
159 smart00729 Elp3 Elongator prot 92.3 7.5 0.00016 37.2 16.1 148 96-253 28-186 (216)
160 COG2513 PrpB PEP phosphonomuta 92.3 1.3 2.9E-05 46.4 11.1 107 198-310 62-183 (289)
161 cd00958 DhnA Class I fructose- 92.3 9.7 0.00021 38.5 17.4 184 95-312 15-213 (235)
162 TIGR00167 cbbA ketose-bisphosp 92.2 17 0.00037 38.5 19.5 184 97-311 25-234 (288)
163 PRK09195 gatY tagatose-bisphos 92.1 18 0.00038 38.3 19.5 182 97-311 25-230 (284)
164 PRK11320 prpB 2-methylisocitra 92.1 2.3 4.9E-05 45.1 12.9 109 197-311 61-184 (292)
165 cd00408 DHDPS-like Dihydrodipi 92.1 17 0.00036 37.8 23.7 195 97-335 14-216 (281)
166 PRK08673 3-deoxy-7-phosphohept 92.0 8 0.00017 41.8 17.1 181 98-315 104-301 (335)
167 PRK07535 methyltetrahydrofolat 92.0 12 0.00027 38.9 18.0 155 98-278 22-189 (261)
168 PF13714 PEP_mutase: Phosphoen 92.0 1.7 3.6E-05 44.7 11.4 109 197-310 52-172 (238)
169 TIGR01858 tag_bisphos_ald clas 91.9 16 0.00034 38.7 18.8 182 97-311 23-228 (282)
170 PRK00278 trpC indole-3-glycero 91.9 14 0.00029 38.5 18.3 166 100-310 69-237 (260)
171 PRK08610 fructose-bisphosphate 91.8 20 0.00042 38.0 19.5 184 97-311 25-231 (286)
172 TIGR03569 NeuB_NnaB N-acetylne 91.8 4.3 9.2E-05 43.8 14.7 139 108-275 103-254 (329)
173 cd00377 ICL_PEPM Members of th 91.8 10 0.00023 38.9 17.1 179 107-311 22-224 (243)
174 PF03102 NeuB: NeuB family; I 91.7 4 8.7E-05 42.0 13.9 153 95-315 50-205 (241)
175 cd06556 ICL_KPHMT Members of t 91.7 1.6 3.5E-05 44.9 11.0 70 197-275 55-124 (240)
176 PRK13585 1-(5-phosphoribosyl)- 91.7 6.8 0.00015 39.7 15.6 173 102-312 33-221 (241)
177 TIGR02319 CPEP_Pphonmut carbox 91.7 2.5 5.5E-05 44.8 12.7 108 197-310 60-182 (294)
178 cd02940 DHPD_FMN Dihydropyrimi 91.7 3 6.6E-05 44.1 13.4 94 161-259 111-205 (299)
179 TIGR00284 dihydropteroate synt 91.7 21 0.00045 40.8 20.6 178 101-313 165-351 (499)
180 TIGR01037 pyrD_sub1_fam dihydr 91.7 11 0.00023 39.8 17.6 89 160-257 100-192 (300)
181 TIGR01521 FruBisAldo_II_B fruc 91.7 20 0.00043 39.0 19.5 174 97-292 23-235 (347)
182 PRK09490 metH B12-dependent me 91.4 49 0.0011 41.9 25.6 212 98-335 157-425 (1229)
183 PRK03620 5-dehydro-4-deoxygluc 91.4 20 0.00042 38.1 19.2 196 97-335 24-226 (303)
184 cd00429 RPE Ribulose-5-phospha 91.3 14 0.0003 36.3 17.0 173 97-310 8-191 (211)
185 PRK12857 fructose-1,6-bisphosp 91.2 23 0.00049 37.5 19.8 182 97-311 25-230 (284)
186 TIGR00587 nfo apurinic endonuc 91.1 9.8 0.00021 39.6 16.4 206 104-337 14-250 (274)
187 TIGR01290 nifB nitrogenase cof 91.1 7 0.00015 43.9 16.2 177 96-290 58-267 (442)
188 TIGR00539 hemN_rel putative ox 91.0 5.2 0.00011 43.4 14.7 146 98-253 32-186 (360)
189 TIGR00538 hemN oxygen-independ 90.9 7.1 0.00015 43.8 16.1 131 114-254 102-238 (455)
190 cd00952 CHBPH_aldolase Trans-o 90.8 1.9 4.1E-05 45.9 10.9 100 229-334 24-127 (309)
191 TIGR01210 conserved hypothetic 90.8 3.9 8.5E-05 43.6 13.3 90 162-261 154-258 (313)
192 PRK12738 kbaY tagatose-bisphos 90.8 25 0.00054 37.3 20.0 182 97-311 25-230 (286)
193 COG1082 IolE Sugar phosphate i 90.8 10 0.00022 38.7 15.9 211 97-338 14-243 (274)
194 TIGR00735 hisF imidazoleglycer 90.7 11 0.00024 38.8 16.2 191 102-335 31-248 (254)
195 TIGR00683 nanA N-acetylneurami 90.7 14 0.0003 39.0 17.1 195 97-335 17-220 (290)
196 TIGR02319 CPEP_Pphonmut carbox 90.7 7 0.00015 41.5 14.7 205 107-337 29-255 (294)
197 TIGR02666 moaA molybdenum cofa 90.7 6.2 0.00013 42.2 14.7 140 97-249 42-184 (334)
198 PRK13813 orotidine 5'-phosphat 90.6 4.7 0.0001 40.2 13.0 171 98-310 13-189 (215)
199 PRK07259 dihydroorotate dehydr 90.4 22 0.00049 37.4 18.5 136 105-257 27-192 (301)
200 PRK15452 putative protease; Pr 90.4 2.5 5.5E-05 47.4 11.8 146 152-333 4-153 (443)
201 PRK13753 dihydropteroate synth 90.4 19 0.0004 38.1 17.4 30 95-124 19-48 (279)
202 cd02933 OYE_like_FMN Old yello 90.4 5.5 0.00012 43.0 14.1 132 169-310 158-311 (338)
203 TIGR00510 lipA lipoate synthas 90.4 5.4 0.00012 42.5 13.7 159 98-270 91-268 (302)
204 PRK03170 dihydrodipicolinate s 90.4 25 0.00055 36.8 18.8 195 97-335 18-220 (292)
205 PRK05481 lipoyl synthase; Prov 90.4 9.7 0.00021 40.2 15.6 165 96-274 78-261 (289)
206 TIGR01361 DAHP_synth_Bsub phos 90.2 8.2 0.00018 40.2 14.7 113 152-274 134-259 (260)
207 smart00518 AP2Ec AP endonuclea 90.2 10 0.00022 38.9 15.5 202 105-337 14-246 (273)
208 PRK13398 3-deoxy-7-phosphohept 90.2 12 0.00027 39.0 16.0 111 152-275 136-262 (266)
209 COG0826 Collagenase and relate 90.2 2.6 5.6E-05 45.8 11.3 98 161-279 15-114 (347)
210 PRK09234 fbiC FO synthase; Rev 90.1 15 0.00034 44.5 18.8 223 94-337 98-364 (843)
211 TIGR02668 moaA_archaeal probab 90.1 9.6 0.00021 40.1 15.4 139 96-249 38-179 (302)
212 COG2513 PrpB PEP phosphonomuta 90.0 7.3 0.00016 41.0 13.8 207 107-337 31-256 (289)
213 PRK13347 coproporphyrinogen II 89.9 8.5 0.00019 43.2 15.6 134 113-256 102-241 (453)
214 PRK10481 hypothetical protein; 89.9 3.3 7.2E-05 42.2 11.1 131 82-261 57-195 (224)
215 PRK12595 bifunctional 3-deoxy- 89.8 9.2 0.0002 41.8 15.2 115 152-276 227-354 (360)
216 COG1856 Uncharacterized homolo 89.8 7.4 0.00016 39.6 13.1 138 103-254 99-252 (275)
217 cd00951 KDGDH 5-dehydro-4-deox 89.8 2.9 6.3E-05 44.0 11.1 107 223-335 9-119 (289)
218 PRK09249 coproporphyrinogen II 89.7 11 0.00024 42.3 16.3 134 113-256 101-240 (453)
219 TIGR01303 IMP_DH_rel_1 IMP deh 89.7 1.2 2.7E-05 50.2 8.7 74 234-316 224-297 (475)
220 cd00950 DHDPS Dihydrodipicolin 89.7 14 0.00031 38.4 16.2 194 97-334 17-218 (284)
221 PRK13399 fructose-1,6-bisphosp 89.6 35 0.00076 37.1 19.3 192 97-310 25-274 (347)
222 PRK08446 coproporphyrinogen II 89.5 7.5 0.00016 42.1 14.3 130 113-254 50-185 (350)
223 cd04732 HisA HisA. Phosphorib 89.5 9.8 0.00021 38.3 14.4 173 100-310 28-216 (234)
224 cd04731 HisF The cyclase subun 89.4 13 0.00029 37.7 15.4 194 101-334 27-241 (243)
225 TIGR01211 ELP3 histone acetylt 89.4 35 0.00075 39.2 20.0 177 98-278 115-335 (522)
226 PRK11320 prpB 2-methylisocitra 89.4 14 0.0003 39.3 15.7 205 107-337 30-256 (292)
227 PRK15108 biotin synthase; Prov 89.3 2.1 4.7E-05 46.3 9.9 123 197-334 76-207 (345)
228 cd04740 DHOD_1B_like Dihydroor 89.3 7.8 0.00017 40.7 13.9 163 98-275 99-280 (296)
229 cd00952 CHBPH_aldolase Trans-o 89.3 33 0.00072 36.5 20.7 196 97-334 25-228 (309)
230 PF01116 F_bP_aldolase: Fructo 89.2 33 0.00071 36.3 20.0 182 97-312 24-234 (287)
231 PRK00366 ispG 4-hydroxy-3-meth 89.2 7.1 0.00015 42.3 13.3 141 99-244 40-197 (360)
232 PRK04165 acetyl-CoA decarbonyl 89.2 33 0.00071 38.7 19.2 124 98-258 102-235 (450)
233 cd02803 OYE_like_FMN_family Ol 89.1 9.7 0.00021 40.5 14.7 135 169-310 147-308 (327)
234 PRK03170 dihydrodipicolinate s 89.0 2.6 5.7E-05 44.2 10.1 107 223-335 10-121 (292)
235 TIGR02321 Pphn_pyruv_hyd phosp 88.9 8.6 0.00019 40.8 13.7 108 197-310 58-183 (290)
236 PLN02417 dihydrodipicolinate s 88.6 3.4 7.4E-05 43.3 10.6 107 223-335 10-121 (280)
237 TIGR00683 nanA N-acetylneurami 88.6 3.1 6.8E-05 43.8 10.3 102 228-335 15-121 (290)
238 COG0635 HemN Coproporphyrinoge 88.6 9.8 0.00021 42.4 14.6 91 161-253 131-223 (416)
239 PRK07455 keto-hydroxyglutarate 88.6 27 0.00058 34.5 17.0 156 99-310 22-177 (187)
240 TIGR03569 NeuB_NnaB N-acetylne 88.5 10 0.00022 41.0 14.1 75 232-314 144-224 (329)
241 COG0821 gcpE 1-hydroxy-2-methy 88.4 11 0.00024 40.4 14.0 140 100-244 35-190 (361)
242 cd00950 DHDPS Dihydrodipicolin 88.3 3.2 6.9E-05 43.3 10.1 107 223-335 9-120 (284)
243 cd02930 DCR_FMN 2,4-dienoyl-Co 88.3 9.3 0.0002 41.4 14.0 132 170-310 144-303 (353)
244 PF00701 DHDPS: Dihydrodipicol 88.3 7.4 0.00016 40.7 12.9 110 165-288 24-134 (289)
245 COG3623 SgaU Putative L-xylulo 88.2 3.7 8.1E-05 41.9 9.8 200 93-336 13-247 (287)
246 TIGR02026 BchE magnesium-proto 88.2 17 0.00038 41.2 16.7 161 98-275 222-390 (497)
247 COG2100 Predicted Fe-S oxidore 88.0 12 0.00025 40.2 13.7 151 85-247 124-284 (414)
248 TIGR00284 dihydropteroate synt 88.0 19 0.00041 41.1 16.6 129 227-376 160-290 (499)
249 PRK08318 dihydropyrimidine deh 88.0 11 0.00025 41.7 14.8 164 99-276 111-304 (420)
250 cd04733 OYE_like_2_FMN Old yel 87.7 6.4 0.00014 42.4 12.2 133 168-310 154-319 (338)
251 PRK03620 5-dehydro-4-deoxygluc 87.7 3.8 8.3E-05 43.4 10.3 106 223-334 16-125 (303)
252 PRK05660 HemN family oxidoredu 87.7 11 0.00023 41.4 14.1 131 113-253 57-193 (378)
253 PRK07565 dihydroorotate dehydr 87.7 17 0.00036 39.1 15.4 106 197-313 84-197 (334)
254 TIGR03249 KdgD 5-dehydro-4-deo 87.6 3.9 8.4E-05 43.2 10.3 107 223-335 14-124 (296)
255 TIGR01949 AroFGH_arch predicte 87.6 32 0.0007 35.5 17.0 192 80-312 20-226 (258)
256 PRK06852 aldolase; Validated 87.5 11 0.00024 40.2 13.5 199 84-311 39-263 (304)
257 TIGR02631 xylA_Arthro xylose i 87.5 5.6 0.00012 43.8 11.8 23 99-121 30-52 (382)
258 PRK12737 gatY tagatose-bisphos 87.5 42 0.00091 35.5 19.2 192 88-312 14-231 (284)
259 TIGR02317 prpB methylisocitrat 87.4 10 0.00022 40.1 13.1 205 107-337 26-251 (285)
260 cd00954 NAL N-Acetylneuraminic 87.4 4.1 8.9E-05 42.8 10.3 101 228-334 15-120 (288)
261 PRK05835 fructose-bisphosphate 87.2 46 0.00099 35.7 20.9 165 97-291 24-214 (307)
262 TIGR00612 ispG_gcpE 1-hydroxy- 87.2 11 0.00024 40.5 13.2 141 99-244 32-188 (346)
263 COG1244 Predicted Fe-S oxidore 87.1 15 0.00033 39.3 14.0 165 79-263 103-297 (358)
264 PRK06843 inosine 5-monophospha 87.1 2.9 6.3E-05 46.3 9.2 73 236-320 154-226 (404)
265 TIGR03586 PseI pseudaminic aci 86.9 3.8 8.3E-05 44.1 9.8 94 208-313 125-222 (327)
266 cd06557 KPHMT-like Ketopantoat 86.8 8.4 0.00018 40.0 12.0 138 105-277 23-193 (254)
267 PRK10605 N-ethylmaleimide redu 86.7 14 0.00029 40.4 14.1 131 171-310 167-318 (362)
268 TIGR00674 dapA dihydrodipicoli 86.7 4.8 0.0001 42.2 10.3 102 228-335 13-118 (285)
269 cd00408 DHDPS-like Dihydrodipi 86.7 5 0.00011 41.7 10.5 101 228-334 12-116 (281)
270 PRK04147 N-acetylneuraminate l 86.7 4.4 9.5E-05 42.7 10.1 108 222-335 11-124 (293)
271 TIGR02313 HpaI-NOT-DapA 2,4-di 86.6 4.6 9.9E-05 42.7 10.2 106 223-334 9-119 (294)
272 PRK05628 coproporphyrinogen II 86.6 14 0.0003 40.3 14.3 91 161-253 102-194 (375)
273 PRK08673 3-deoxy-7-phosphohept 86.6 17 0.00036 39.4 14.5 113 152-275 202-328 (335)
274 PLN02424 ketopantoate hydroxym 86.5 18 0.00039 39.0 14.4 148 96-277 37-217 (332)
275 PRK05799 coproporphyrinogen II 86.4 11 0.00024 41.0 13.3 84 168-253 101-185 (374)
276 PRK13396 3-deoxy-7-phosphohept 86.2 13 0.00029 40.4 13.5 111 152-275 210-337 (352)
277 PRK07226 fructose-bisphosphate 86.2 45 0.00098 34.6 18.4 199 97-335 35-249 (267)
278 PF04481 DUF561: Protein of un 86.1 16 0.00035 37.1 12.9 176 96-310 22-211 (242)
279 COG0329 DapA Dihydrodipicolina 85.9 20 0.00044 38.0 14.7 196 98-335 22-224 (299)
280 PRK13397 3-deoxy-7-phosphohept 85.9 18 0.00038 37.6 13.6 139 114-274 98-249 (250)
281 PRK07084 fructose-bisphosphate 85.9 55 0.0012 35.3 20.4 186 97-310 31-265 (321)
282 PLN02623 pyruvate kinase 85.9 75 0.0016 37.0 19.9 155 97-275 275-439 (581)
283 PRK00112 tgt queuine tRNA-ribo 85.8 12 0.00026 40.9 13.2 96 221-324 183-279 (366)
284 PRK07107 inosine 5-monophospha 85.8 11 0.00023 43.1 13.2 141 95-254 235-381 (502)
285 cd04735 OYE_like_4_FMN Old yel 85.8 14 0.00031 40.1 13.7 135 171-310 152-310 (353)
286 PLN03033 2-dehydro-3-deoxyphos 85.7 39 0.00085 35.6 16.0 45 231-275 217-271 (290)
287 COG0329 DapA Dihydrodipicolina 85.7 6.1 0.00013 42.0 10.6 88 224-313 14-106 (299)
288 PF00809 Pterin_bind: Pterin b 85.6 20 0.00043 36.0 13.7 151 95-273 13-189 (210)
289 cd07937 DRE_TIM_PC_TC_5S Pyruv 85.6 23 0.00049 37.1 14.6 130 98-252 88-222 (275)
290 COG3473 Maleate cis-trans isom 85.5 20 0.00044 36.2 13.1 138 103-277 56-204 (238)
291 TIGR03551 F420_cofH 7,8-dideme 85.4 5.6 0.00012 42.9 10.3 78 229-311 68-156 (343)
292 PRK00748 1-(5-phosphoribosyl)- 85.4 41 0.00089 33.8 16.0 148 101-277 30-190 (233)
293 PRK13745 anaerobic sulfatase-m 85.2 42 0.00091 37.1 17.3 146 97-253 47-200 (412)
294 PRK00311 panB 3-methyl-2-oxobu 85.1 13 0.00028 38.9 12.3 138 105-277 26-196 (264)
295 cd01572 QPRTase Quinolinate ph 85.1 11 0.00024 39.4 11.9 130 206-358 107-245 (268)
296 PRK07565 dihydroorotate dehydr 85.0 22 0.00048 38.2 14.6 161 98-276 111-290 (334)
297 TIGR00674 dapA dihydrodipicoli 85.0 53 0.0012 34.3 22.1 193 97-334 15-216 (285)
298 PRK06806 fructose-bisphosphate 84.8 56 0.0012 34.5 20.3 184 97-313 25-230 (281)
299 PRK08208 coproporphyrinogen II 84.8 23 0.0005 39.5 15.1 92 161-254 135-228 (430)
300 PF13714 PEP_mutase: Phosphoen 84.6 12 0.00026 38.5 11.8 176 107-311 22-217 (238)
301 cd00945 Aldolase_Class_I Class 84.6 39 0.00084 32.4 15.6 96 233-334 64-167 (201)
302 PF02679 ComA: (2R)-phospho-3- 84.5 2.1 4.6E-05 44.1 6.2 145 108-271 29-194 (244)
303 PRK08508 biotin synthase; Prov 84.4 3.2 6.9E-05 43.5 7.6 68 197-269 40-109 (279)
304 cd01568 QPRTase_NadC Quinolina 84.3 12 0.00026 39.2 11.8 130 206-357 106-245 (269)
305 cd02801 DUS_like_FMN Dihydrour 84.3 19 0.00041 36.0 12.9 149 152-311 56-211 (231)
306 PF03102 NeuB: NeuB family; I 84.2 12 0.00027 38.5 11.6 138 107-275 82-232 (241)
307 cd04727 pdxS PdxS is a subunit 84.1 3.4 7.3E-05 43.4 7.5 70 237-323 77-146 (283)
308 PLN02433 uroporphyrinogen deca 84.1 9.3 0.0002 41.3 11.3 86 234-334 179-273 (345)
309 TIGR01859 fruc_bis_ald_ fructo 84.1 12 0.00026 39.4 11.8 94 206-310 4-101 (282)
310 COG0036 Rpe Pentose-5-phosphat 84.1 18 0.0004 36.7 12.4 116 166-310 74-194 (220)
311 PRK08227 autoinducer 2 aldolas 83.8 34 0.00074 35.8 14.7 121 164-312 99-225 (264)
312 TIGR02321 Pphn_pyruv_hyd phosp 83.7 38 0.00083 35.9 15.3 202 107-336 28-256 (290)
313 TIGR02082 metH 5-methyltetrahy 83.6 1.4E+02 0.003 38.0 22.6 213 98-335 141-409 (1178)
314 TIGR01304 IMP_DH_rel_2 IMP deh 83.6 7.2 0.00016 42.7 10.1 89 204-311 119-214 (369)
315 cd02810 DHOD_DHPD_FMN Dihydroo 83.4 23 0.00049 37.0 13.5 85 231-320 108-202 (289)
316 PRK00694 4-hydroxy-3-methylbut 83.3 61 0.0013 37.5 17.4 128 97-226 41-209 (606)
317 PRK12677 xylose isomerase; Pro 83.2 12 0.00025 41.3 11.7 19 103-121 33-51 (384)
318 PRK05581 ribulose-phosphate 3- 83.2 48 0.001 32.9 15.3 174 97-310 12-195 (220)
319 TIGR01740 pyrF orotidine 5'-ph 83.2 34 0.00075 34.2 14.3 170 99-310 9-193 (213)
320 PRK11858 aksA trans-homoaconit 83.2 24 0.00053 38.7 14.2 58 206-264 147-206 (378)
321 TIGR00126 deoC deoxyribose-pho 83.1 55 0.0012 33.1 17.2 101 231-335 67-171 (211)
322 TIGR01464 hemE uroporphyrinoge 83.1 12 0.00026 40.1 11.6 85 234-334 180-274 (338)
323 PRK07379 coproporphyrinogen II 83.0 13 0.00029 40.9 12.2 130 114-253 66-201 (400)
324 cd01320 ADA Adenosine deaminas 83.0 14 0.0003 39.2 11.9 107 194-309 101-213 (325)
325 cd02940 DHPD_FMN Dihydropyrimi 82.9 13 0.00029 39.2 11.7 162 98-270 110-297 (299)
326 PTZ00314 inosine-5'-monophosph 82.9 10 0.00022 43.3 11.3 69 237-314 243-311 (495)
327 cd03174 DRE_TIM_metallolyase D 82.9 21 0.00047 36.3 13.0 22 104-125 77-98 (265)
328 PF04273 DUF442: Putative phos 82.8 6.9 0.00015 35.4 8.1 79 208-292 18-97 (110)
329 PRK13111 trpA tryptophan synth 82.6 65 0.0014 33.5 16.8 129 170-317 33-177 (258)
330 PRK06096 molybdenum transport 82.5 13 0.00029 39.2 11.3 131 206-357 110-254 (284)
331 cd04734 OYE_like_3_FMN Old yel 82.5 30 0.00065 37.4 14.4 83 171-253 149-248 (343)
332 cd04739 DHOD_like Dihydroorota 82.4 25 0.00055 37.7 13.7 165 98-276 109-288 (325)
333 TIGR01334 modD putative molybd 82.4 14 0.00031 38.8 11.4 129 206-357 109-253 (277)
334 cd01335 Radical_SAM Radical SA 82.4 43 0.00093 31.3 14.4 136 101-251 31-173 (204)
335 PRK07094 biotin synthase; Prov 82.4 26 0.00057 37.2 13.8 44 232-275 71-115 (323)
336 PRK05904 coproporphyrinogen II 82.3 37 0.0008 36.9 15.1 91 161-253 97-189 (353)
337 cd03309 CmuC_like CmuC_like. P 82.3 5.9 0.00013 42.5 8.8 90 234-334 155-255 (321)
338 COG1879 RbsB ABC-type sugar tr 82.2 69 0.0015 33.5 18.4 206 95-318 44-253 (322)
339 PF00682 HMGL-like: HMGL-like 82.1 20 0.00044 36.1 12.3 133 98-251 64-210 (237)
340 PF00701 DHDPS: Dihydrodipicol 82.1 9.4 0.0002 40.0 10.1 101 229-335 17-121 (289)
341 PLN02334 ribulose-phosphate 3- 82.0 61 0.0013 32.8 16.5 167 102-310 21-199 (229)
342 PRK06801 hypothetical protein; 82.0 30 0.00065 36.6 13.7 96 206-312 6-103 (286)
343 cd03315 MLE_like Muconate lact 81.8 67 0.0014 33.1 19.2 165 99-300 85-250 (265)
344 PRK07259 dihydroorotate dehydr 81.8 22 0.00047 37.5 12.7 105 197-312 74-188 (301)
345 PRK01130 N-acetylmannosamine-6 81.8 60 0.0013 32.5 16.1 157 99-310 21-199 (221)
346 cd04739 DHOD_like Dihydroorota 81.7 23 0.00049 38.1 13.0 105 198-313 83-195 (325)
347 COG0535 Predicted Fe-S oxidore 81.7 40 0.00087 35.4 14.9 142 96-253 46-192 (347)
348 PF02548 Pantoate_transf: Keto 81.5 23 0.0005 36.9 12.3 136 105-272 27-195 (261)
349 TIGR00222 panB 3-methyl-2-oxob 81.5 23 0.00051 37.0 12.5 142 104-277 25-195 (263)
350 TIGR00007 phosphoribosylformim 81.3 41 0.0009 33.7 14.2 145 102-276 29-188 (230)
351 cd04722 TIM_phosphate_binding 81.3 49 0.0011 31.2 15.2 72 238-316 75-146 (200)
352 cd02932 OYE_YqiM_FMN Old yello 81.2 25 0.00054 37.8 13.2 132 170-310 161-317 (336)
353 TIGR03822 AblA_like_2 lysine-2 81.1 83 0.0018 33.7 19.2 163 96-279 117-297 (321)
354 COG0167 PyrD Dihydroorotate de 81.0 38 0.00082 36.3 14.1 168 97-276 105-292 (310)
355 PTZ00170 D-ribulose-5-phosphat 81.0 22 0.00047 36.2 12.0 113 230-357 15-134 (228)
356 cd04724 Tryptophan_synthase_al 80.6 72 0.0016 32.7 16.7 93 170-275 21-128 (242)
357 PF07302 AroM: AroM protein; 80.6 16 0.00035 37.2 10.7 138 82-271 54-199 (221)
358 PTZ00314 inosine-5'-monophosph 80.6 35 0.00077 38.9 14.6 132 99-255 239-374 (495)
359 COG1856 Uncharacterized homolo 80.5 73 0.0016 32.7 20.4 208 100-332 41-271 (275)
360 cd00959 DeoC 2-deoxyribose-5-p 80.3 65 0.0014 32.0 15.7 100 231-334 66-169 (203)
361 TIGR00343 pyridoxal 5'-phospha 80.3 13 0.00027 39.3 9.9 70 237-323 79-148 (287)
362 PRK01008 queuine tRNA-ribosylt 80.1 29 0.00063 38.1 13.2 140 168-316 145-286 (372)
363 PF04551 GcpE: GcpE protein; 80.1 17 0.00038 39.4 11.2 138 98-245 28-198 (359)
364 cd03315 MLE_like Muconate lact 80.0 19 0.00041 37.1 11.4 101 96-225 138-238 (265)
365 PRK11613 folP dihydropteroate 79.9 14 0.00031 39.0 10.4 84 221-313 21-117 (282)
366 PRK02083 imidazole glycerol ph 79.9 76 0.0016 32.5 17.2 193 101-335 30-246 (253)
367 cd00717 URO-D Uroporphyrinogen 79.9 17 0.00036 38.9 11.3 85 234-334 177-271 (335)
368 PLN02858 fructose-bisphosphate 79.8 1.1E+02 0.0024 39.5 19.9 194 88-311 1110-1329(1378)
369 cd01299 Met_dep_hydrolase_A Me 79.7 9.4 0.0002 40.5 9.3 70 232-311 118-198 (342)
370 PRK13523 NADPH dehydrogenase N 79.6 38 0.00083 36.6 13.9 132 169-310 148-302 (337)
371 PRK07360 FO synthase subunit 2 79.5 12 0.00025 41.1 10.0 104 227-335 87-209 (371)
372 cd00405 PRAI Phosphoribosylant 79.5 21 0.00046 35.3 11.2 163 153-358 2-171 (203)
373 PRK09250 fructose-bisphosphate 79.4 70 0.0015 34.8 15.5 78 164-255 151-238 (348)
374 cd06556 ICL_KPHMT Members of t 79.4 38 0.00082 34.9 13.1 133 106-271 24-189 (240)
375 PRK00208 thiG thiazole synthas 79.3 15 0.00032 38.0 10.0 169 105-310 25-201 (250)
376 cd04728 ThiG Thiazole synthase 79.2 17 0.00037 37.6 10.3 168 105-310 24-201 (248)
377 PF02679 ComA: (2R)-phospho-3- 79.2 7.4 0.00016 40.2 7.8 141 177-335 38-194 (244)
378 cd00288 Pyruvate_Kinase Pyruva 79.2 1.2E+02 0.0027 34.5 19.3 159 97-276 171-336 (480)
379 COG2089 SpsE Sialic acid synth 79.1 51 0.0011 35.5 14.0 142 105-274 114-265 (347)
380 PLN02591 tryptophan synthase 79.1 85 0.0018 32.6 16.2 92 171-275 24-130 (250)
381 TIGR03471 HpnJ hopanoid biosyn 79.1 38 0.00083 38.1 14.3 160 97-275 226-390 (472)
382 PTZ00170 D-ribulose-5-phosphat 78.9 79 0.0017 32.1 18.0 171 99-310 17-198 (228)
383 cd08210 RLP_RrRLP Ribulose bis 78.9 60 0.0013 35.6 15.1 188 97-292 137-352 (364)
384 TIGR03234 OH-pyruv-isom hydrox 78.8 27 0.00058 35.5 11.9 112 163-291 14-146 (254)
385 cd04747 OYE_like_5_FMN Old yel 78.7 37 0.00081 37.1 13.6 136 169-310 150-325 (361)
386 TIGR03849 arch_ComA phosphosul 78.6 30 0.00065 35.6 11.9 125 205-335 42-182 (237)
387 PRK10076 pyruvate formate lyas 78.5 7.5 0.00016 39.2 7.6 71 197-271 19-89 (213)
388 TIGR02990 ectoine_eutA ectoine 78.4 11 0.00024 38.7 8.9 91 167-277 110-206 (239)
389 PLN02495 oxidoreductase, actin 78.3 1.1E+02 0.0023 34.0 16.9 166 97-276 123-321 (385)
390 TIGR00430 Q_tRNA_tgt tRNA-guan 78.0 40 0.00086 37.0 13.5 96 221-324 179-275 (368)
391 PRK05718 keto-hydroxyglutarate 78.0 12 0.00026 37.9 8.8 86 209-312 8-93 (212)
392 cd04741 DHOD_1A_like Dihydroor 77.8 75 0.0016 33.5 15.2 162 100-274 102-292 (294)
393 PRK02227 hypothetical protein; 77.6 31 0.00067 35.5 11.6 76 240-318 13-92 (238)
394 cd04729 NanE N-acetylmannosami 77.3 82 0.0018 31.5 15.2 159 99-310 25-203 (219)
395 TIGR00676 fadh2 5,10-methylene 77.1 89 0.0019 32.6 15.4 161 101-275 15-182 (272)
396 cd00739 DHPS DHPS subgroup of 77.1 19 0.0004 37.5 10.2 84 221-313 7-103 (257)
397 TIGR01362 KDO8P_synth 3-deoxy- 77.0 86 0.0019 32.7 14.7 138 115-275 93-252 (258)
398 PLN02417 dihydrodipicolinate s 76.9 41 0.00089 35.2 12.9 61 204-264 83-144 (280)
399 TIGR00449 tgt_general tRNA-gua 76.8 38 0.00083 37.1 13.0 94 221-322 178-272 (367)
400 PRK08883 ribulose-phosphate 3- 76.8 33 0.00072 34.8 11.7 164 105-310 16-192 (220)
401 PF01702 TGT: Queuine tRNA-rib 76.8 20 0.00044 36.5 10.3 86 222-315 57-143 (238)
402 PRK14024 phosphoribosyl isomer 76.8 88 0.0019 32.0 15.0 190 102-331 33-237 (241)
403 COG0502 BioB Biotin synthase a 76.6 4.3 9.3E-05 43.7 5.5 116 193-319 80-205 (335)
404 cd03307 Mta_CmuA_like MtaA_Cmu 76.3 7.1 0.00015 41.6 7.1 86 234-334 171-264 (326)
405 PRK06252 methylcobalamin:coenz 76.3 11 0.00025 40.2 8.7 84 235-333 181-272 (339)
406 TIGR00737 nifR3_yhdG putative 76.2 78 0.0017 33.7 15.0 141 160-312 72-221 (319)
407 cd02803 OYE_like_FMN_family Ol 76.0 28 0.0006 37.0 11.5 80 235-316 142-251 (327)
408 cd00953 KDG_aldolase KDG (2-ke 75.9 24 0.00053 36.9 10.8 90 223-316 9-101 (279)
409 COG2100 Predicted Fe-S oxidore 75.9 56 0.0012 35.2 13.2 114 232-368 142-258 (414)
410 PRK05286 dihydroorotate dehydr 75.8 1.2E+02 0.0027 32.7 17.6 188 105-313 73-318 (344)
411 PRK13210 putative L-xylulose 5 75.8 45 0.00098 34.2 12.8 122 164-291 17-156 (284)
412 TIGR03849 arch_ComA phosphosul 75.8 21 0.00045 36.8 9.9 155 107-285 15-191 (237)
413 PLN02461 Probable pyruvate kin 75.7 1.6E+02 0.0034 33.9 18.6 160 97-276 190-356 (511)
414 COG0191 Fba Fructose/tagatose 75.7 1.1E+02 0.0025 32.3 18.8 189 89-310 15-231 (286)
415 COG0167 PyrD Dihydroorotate de 75.5 62 0.0013 34.7 13.7 97 202-313 148-270 (310)
416 PRK08207 coproporphyrinogen II 75.4 84 0.0018 35.8 15.7 85 168-254 271-356 (488)
417 TIGR00078 nadC nicotinate-nucl 75.4 36 0.00078 35.6 11.8 131 206-358 103-241 (265)
418 PRK00115 hemE uroporphyrinogen 75.3 1.2E+02 0.0026 32.6 16.4 28 103-130 188-218 (346)
419 PRK06294 coproporphyrinogen II 75.3 50 0.0011 36.0 13.5 91 161-253 97-189 (370)
420 cd06557 KPHMT-like Ketopantoat 75.2 30 0.00065 36.0 11.1 90 173-275 29-126 (254)
421 PRK00115 hemE uroporphyrinogen 75.2 5.6 0.00012 42.9 6.0 36 234-269 186-222 (346)
422 PRK13306 ulaD 3-keto-L-gulonat 75.1 31 0.00067 34.8 11.0 94 98-218 13-107 (216)
423 PTZ00372 endonuclease 4-like p 75.0 1.3E+02 0.0029 33.5 16.6 15 321-335 365-379 (413)
424 PRK09722 allulose-6-phosphate 74.9 22 0.00048 36.4 9.9 121 168-311 74-195 (229)
425 TIGR01037 pyrD_sub1_fam dihydr 74.7 73 0.0016 33.5 14.2 165 97-276 99-284 (300)
426 cd07943 DRE_TIM_HOA 4-hydroxy- 74.7 60 0.0013 33.6 13.3 55 209-264 146-203 (263)
427 PRK09057 coproporphyrinogen II 74.6 66 0.0014 35.2 14.2 91 161-254 98-190 (380)
428 COG0282 ackA Acetate kinase [E 74.5 29 0.00063 38.1 11.0 119 159-329 123-248 (396)
429 PRK03906 mannonate dehydratase 74.5 43 0.00093 37.0 12.6 47 187-233 65-115 (385)
430 PRK14057 epimerase; Provisiona 74.4 1.2E+02 0.0025 31.8 15.5 69 199-276 173-241 (254)
431 COG1830 FbaB DhnA-type fructos 74.2 65 0.0014 33.7 13.1 103 199-310 125-234 (265)
432 cd07944 DRE_TIM_HOA_like 4-hyd 74.2 92 0.002 32.4 14.5 55 208-263 142-200 (266)
433 TIGR00736 nifR3_rel_arch TIM-b 74.2 1.1E+02 0.0024 31.4 14.9 145 153-314 70-221 (231)
434 PLN02389 biotin synthase 74.1 15 0.00032 40.4 9.0 110 197-319 116-239 (379)
435 PRK04180 pyridoxal biosynthesi 74.1 14 0.0003 39.1 8.3 70 237-324 86-156 (293)
436 cd00953 KDG_aldolase KDG (2-ke 73.9 1.2E+02 0.0026 31.7 21.8 188 97-334 16-213 (279)
437 PRK06247 pyruvate kinase; Prov 73.9 1.7E+02 0.0036 33.4 17.5 156 97-276 170-332 (476)
438 PRK05198 2-dehydro-3-deoxyphos 73.8 82 0.0018 33.0 13.7 105 161-275 136-260 (264)
439 PRK05567 inosine 5'-monophosph 73.8 19 0.0004 41.0 10.0 70 236-314 229-298 (486)
440 PRK09358 adenosine deaminase; 73.8 1E+02 0.0022 33.0 15.2 142 175-336 93-242 (340)
441 PF01261 AP_endonuc_2: Xylose 73.7 12 0.00027 36.0 7.5 115 171-294 3-138 (213)
442 cd03319 L-Ala-DL-Glu_epimerase 73.6 1.3E+02 0.0027 31.9 17.8 164 99-299 134-297 (316)
443 PRK05848 nicotinate-nucleotide 73.5 36 0.00077 35.8 11.2 131 206-358 107-248 (273)
444 PRK08091 ribulose-phosphate 3- 73.3 1.1E+02 0.0024 31.4 14.4 146 103-275 80-226 (228)
445 TIGR00222 panB 3-methyl-2-oxob 73.3 43 0.00093 35.0 11.6 90 173-275 32-128 (263)
446 cd07948 DRE_TIM_HCS Saccharomy 73.3 67 0.0014 33.5 13.2 56 207-263 144-201 (262)
447 TIGR01212 radical SAM protein, 73.1 1.3E+02 0.0028 31.9 15.6 107 169-278 129-253 (302)
448 COG0274 DeoC Deoxyribose-phosp 73.0 1.2E+02 0.0025 31.2 18.2 187 95-310 18-209 (228)
449 PRK09997 hydroxypyruvate isome 73.0 36 0.00078 34.8 11.1 110 164-291 16-147 (258)
450 PRK04147 N-acetylneuraminate l 73.0 1.3E+02 0.0028 31.6 24.3 193 98-335 21-222 (293)
451 PRK06256 biotin synthase; Vali 73.0 42 0.00091 35.9 12.0 44 232-275 92-138 (336)
452 PF00215 OMPdecase: Orotidine 72.9 18 0.0004 36.4 8.8 97 99-217 11-111 (226)
453 PRK08444 hypothetical protein; 72.8 9.4 0.0002 41.6 7.0 76 227-312 76-167 (353)
454 cd07941 DRE_TIM_LeuA3 Desulfob 72.6 68 0.0015 33.5 13.2 18 107-124 84-101 (273)
455 PRK06354 pyruvate kinase; Prov 72.4 2E+02 0.0044 33.7 18.7 160 96-275 174-340 (590)
456 PRK00043 thiE thiamine-phospha 72.3 1E+02 0.0022 30.2 14.5 167 93-310 13-185 (212)
457 PRK12581 oxaloacetate decarbox 72.3 71 0.0015 36.2 13.9 145 158-311 30-181 (468)
458 PRK08599 coproporphyrinogen II 72.2 25 0.00054 38.3 10.2 84 168-253 102-186 (377)
459 TIGR03572 WbuZ glycosyl amidat 72.2 1.1E+02 0.0025 30.7 15.4 146 101-276 30-196 (232)
460 TIGR01302 IMP_dehydrog inosine 72.1 15 0.00031 41.4 8.5 72 234-314 223-294 (450)
461 TIGR01302 IMP_dehydrog inosine 72.1 47 0.001 37.4 12.5 138 95-254 216-356 (450)
462 TIGR02660 nifV_homocitr homoci 71.9 70 0.0015 34.9 13.6 55 208-263 146-202 (365)
463 cd00958 DhnA Class I fructose- 71.9 27 0.00059 35.2 9.8 83 230-313 72-163 (235)
464 PRK05985 cytosine deaminase; P 71.8 1.6E+02 0.0034 32.1 16.6 103 204-314 191-296 (391)
465 PF08502 LeuA_dimer: LeuA allo 71.6 27 0.00059 32.3 8.9 52 479-530 75-129 (133)
466 PRK09613 thiH thiamine biosynt 71.6 1.1E+02 0.0025 34.6 15.4 117 196-319 114-246 (469)
467 TIGR03700 mena_SCO4494 putativ 71.5 15 0.00033 39.7 8.3 79 228-311 76-165 (351)
468 cd04730 NPD_like 2-Nitropropan 71.5 1.1E+02 0.0025 30.5 17.4 112 165-313 69-185 (236)
469 PRK14340 (dimethylallyl)adenos 71.3 1E+02 0.0022 34.6 15.0 142 96-252 176-333 (445)
470 PRK12738 kbaY tagatose-bisphos 71.3 39 0.00084 35.8 10.9 101 206-317 6-110 (286)
471 PRK00311 panB 3-methyl-2-oxobu 71.2 46 0.001 34.8 11.4 90 173-275 32-129 (264)
472 TIGR01463 mtaA_cmuA methyltran 71.2 15 0.00033 39.2 8.2 73 234-311 180-260 (340)
473 PRK06806 fructose-bisphosphate 70.9 49 0.0011 34.9 11.6 95 206-311 6-102 (281)
474 COG0469 PykF Pyruvate kinase [ 70.9 1.5E+02 0.0032 33.8 15.9 160 97-276 172-338 (477)
475 cd00381 IMPDH IMPDH: The catal 70.6 23 0.00051 38.0 9.4 70 236-314 95-164 (325)
476 COG1453 Predicted oxidoreducta 70.3 43 0.00093 36.7 11.0 116 96-225 29-152 (391)
477 COG2089 SpsE Sialic acid synth 70.1 27 0.00059 37.5 9.4 152 208-393 138-299 (347)
478 PRK09195 gatY tagatose-bisphos 70.1 42 0.00091 35.5 10.9 102 206-318 6-111 (284)
479 PRK09206 pyruvate kinase; Prov 70.1 2E+02 0.0044 32.7 19.1 160 97-276 169-335 (470)
480 PRK02048 4-hydroxy-3-methylbut 69.9 1.8E+02 0.0039 34.0 16.4 128 97-226 37-205 (611)
481 PRK13753 dihydropteroate synth 69.8 28 0.0006 36.8 9.4 82 221-312 8-102 (279)
482 PRK08255 salicylyl-CoA 5-hydro 69.8 71 0.0015 38.4 14.1 85 170-254 558-658 (765)
483 PRK01060 endonuclease IV; Prov 69.6 39 0.00085 34.8 10.6 123 162-292 11-150 (281)
484 COG0320 LipA Lipoate synthase 69.5 1.4E+02 0.003 31.6 14.1 166 95-273 94-277 (306)
485 PTZ00066 pyruvate kinase; Prov 69.5 2.2E+02 0.0047 32.8 18.2 160 97-276 206-372 (513)
486 PRK02227 hypothetical protein; 69.5 1.4E+02 0.0031 30.8 17.7 194 107-330 13-227 (238)
487 TIGR01858 tag_bisphos_ald clas 69.4 45 0.00098 35.2 10.9 101 206-317 4-108 (282)
488 PRK05799 coproporphyrinogen II 69.2 90 0.002 33.9 13.7 111 105-221 100-232 (374)
489 PF09370 TIM-br_sig_trns: TIM- 69.1 56 0.0012 34.2 11.2 136 106-259 27-184 (268)
490 PRK13347 coproporphyrinogen II 69.1 74 0.0016 35.7 13.4 111 105-221 153-284 (453)
491 COG1312 UxuA D-mannonate dehyd 69.0 25 0.00055 37.8 8.8 50 184-233 62-115 (362)
492 cd02931 ER_like_FMN Enoate red 68.9 1.3E+02 0.0029 33.0 15.0 131 170-310 157-332 (382)
493 PLN02495 oxidoreductase, actin 68.8 38 0.00083 37.4 10.6 101 152-258 115-218 (385)
494 PRK05283 deoxyribose-phosphate 68.7 1.6E+02 0.0034 30.9 16.3 158 96-270 78-244 (257)
495 TIGR03128 RuMP_HxlA 3-hexulose 68.7 36 0.00078 33.5 9.7 95 230-337 8-102 (206)
496 cd00956 Transaldolase_FSA Tran 68.6 1.1E+02 0.0023 30.9 13.1 125 97-254 60-185 (211)
497 PRK06464 phosphoenolpyruvate s 68.2 1.5E+02 0.0032 36.1 16.2 139 101-254 621-773 (795)
498 KOG2836 Protein tyrosine phosp 68.1 52 0.0011 31.1 9.6 93 207-308 31-125 (173)
499 PF00224 PK: Pyruvate kinase, 67.9 1.5E+02 0.0032 32.2 14.9 158 97-275 173-337 (348)
500 PLN02489 homocysteine S-methyl 67.9 1.8E+02 0.004 31.4 17.7 149 98-275 160-334 (335)
No 1
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=8e-135 Score=1136.14 Aligned_cols=566 Identities=82% Similarity=1.204 Sum_probs=528.4
Q ss_pred ccccCCCCCCCCccccccCCCCCCCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCCh
Q 006969 48 SCSLQKPPPSLYPRITATRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK 127 (623)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~ 127 (623)
.|.....++......++.||+|+|+.+++|++|+|+|||||||+|++|..|++++|++|+++|+++|||+||+|||.+||
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp 134 (632)
T PLN02321 55 ASSALAASPSRPQVARRPRPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASP 134 (632)
T ss_pred hhhccCCCcccccccccCCcccccccCCCCCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCc
Confidence 44444555555666788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHH
Q 006969 128 EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIAR 207 (623)
Q Consensus 128 ~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~ 207 (623)
+|+++++.|++.+.+.+..+ +++++|++|+|++.+||+++++++++++.++||+|+++||+|+++++++|++|+++++.
T Consensus 135 ~D~e~vr~i~~~~~~~v~~~-~~v~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~ 213 (632)
T PLN02321 135 DDLEAVKTIAKEVGNEVDED-GYVPVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIAR 213 (632)
T ss_pred cHHHHHHHHHHhcccCCCcc-ccceeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHH
Confidence 99999999988655544433 67899999999999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEe
Q 006969 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 287 (623)
Q Consensus 208 ~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H 287 (623)
++|+|||++|+..|+|++||++|+|++|++++++++.++||++|+||||+|+++|++++++|+.+++++|+.++++|++|
T Consensus 214 ~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH 293 (632)
T PLN02321 214 DMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTH 293 (632)
T ss_pred HHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 99999999998669999999999999999999999999999999999999999999999999999999987666889999
Q ss_pred ecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCC
Q 006969 288 CQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLH 367 (623)
Q Consensus 288 ~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~ 367 (623)
||||+|||+||+++|+++||++||+|+||||||+||++||+|+++|+.+++..++|+.+++|+++|+++|++|++++|++
T Consensus 294 ~HND~GlAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~ 373 (632)
T PLN02321 294 CQNDLGLSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQ 373 (632)
T ss_pred eCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999876533468999999999999999999999999
Q ss_pred CCCCCcccCcchhhcccccccccccccCCccccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHH
Q 006969 368 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIF 447 (623)
Q Consensus 368 i~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~ 447 (623)
+++|+||||+|||+|||||||||++|||.+||||+||+||++|.++.+|+|||||||++|+++|+++||+++++++.+++
T Consensus 374 v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~Pe~VG~~r~~~~~i~lgk~SGr~~v~~~L~~lG~~l~~~~~~~~~ 453 (632)
T PLN02321 374 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLFRGNDAGIVLGKLSGRHALKSRLKELGYELDDDELDDVF 453 (632)
T ss_pred CCCCcccccccceehhcCccHHHHccCcccccccCHHHhCCcccccceecccccccHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998887778899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHhcCCcceeEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEecCHHHHHHHHHH
Q 006969 448 WHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVD 527 (623)
Q Consensus 448 ~~iK~lad~~~~v~d~dl~~L~~~~~~~~~~~~~L~~~~v~~g~~~~~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~ 527 (623)
++||+++++++.++++||+.|+++.+...++.|+|.+|+|.++....++|+|++..+||++++.+++|||||||+++||+
T Consensus 454 ~~vk~la~~~~~v~d~dl~~l~~~~~~~~~~~~~l~~~~v~~~~~~~~~a~v~l~~~~g~~~~~~a~G~GPvdA~~~Al~ 533 (632)
T PLN02321 454 KRFKAVAEKKKGVTDEDLIALVSDEVFQPEVVWKLLDLQVTCGTLGLSTATVKLIGPDGVEHIACSVGTGPVDAAYKAVD 533 (632)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhccCCCceEEEEEEEEECCCCCcEEEEEEEeeCCEEEEEEEEecCHHHHHHHHHH
Confidence 99999999999999999999999998877789999999999998888999999975689999999999999999999999
Q ss_pred HhhCCCceeeeeEEeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHhhhccc
Q 006969 528 LIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFK 607 (623)
Q Consensus 528 ~~~~~~v~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~~ 607 (623)
++++.+++|.||+++++++|+||+|+|+|.|+.++..+.+|++.|+..++.|||+|+|+||++|||+||++|+||++.++
T Consensus 534 ~~~~~~~~L~dY~v~~v~~g~da~a~v~V~i~~~~~~~~~~~~~~~~~~~~~~g~G~~~Dii~AS~~A~~~a~n~~~~~~ 613 (632)
T PLN02321 534 LIVKEPVTLLEYSMNAVTEGIDAIATTRVVIRGENSYSSTHAQTGESVQRTFSGSGADMDIVVSSVRAYVSALNKMLGFK 613 (632)
T ss_pred HhhCCCCEEEEEEEEccCCCCCceEEEEEEEEECCCcccccccccccCCCEEEEEEeCcCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999765455677777765689999999999999999999999999999876
Q ss_pred ccCCcCC
Q 006969 608 DQLPAKD 614 (623)
Q Consensus 608 ~~~~~~~ 614 (623)
.....+.
T Consensus 614 ~~~~~~~ 620 (632)
T PLN02321 614 EASKAKS 620 (632)
T ss_pred hhhcccc
Confidence 6654444
No 2
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=5.6e-122 Score=1019.17 Aligned_cols=493 Identities=58% Similarity=0.869 Sum_probs=468.7
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeec
Q 006969 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (623)
Q Consensus 79 ~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 158 (623)
+|+|+|||||||+|++|++|++++|++|++.|+++||++||+|||.+++.|+++++.|++... .+.+++|+
T Consensus 1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~---------~~~i~al~ 71 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVK---------NPRVCGLA 71 (494)
T ss_pred CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC---------CCEEEEEc
Confidence 489999999999999999999999999999999999999999999999999999999986532 26899999
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHH
Q 006969 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 159 r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~ 238 (623)
|++++||+++++++..++.++|++|+++||+|+++++++|++|+++++.++++++|++|.. |.|++||++|+|++|+.+
T Consensus 72 r~~~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~-v~f~~Ed~~r~d~~~l~~ 150 (494)
T TIGR00973 72 RCVEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD-VEFSCEDAGRTEIPFLAR 150 (494)
T ss_pred CCCHHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEcCCCCCCCHHHHHH
Confidence 9999999999999998899999999999999999999999999999999999999999985 999999999999999999
Q ss_pred HHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCcc
Q 006969 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlG 318 (623)
+++++.++||++|+||||+|+++|++++++|+.+++++|..++++|++|||||+|||+||+++|+++||++||+|++|||
T Consensus 151 ~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlG 230 (494)
T TIGR00973 151 IVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIG 230 (494)
T ss_pred HHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeeccc
Confidence 99999999999999999999999999999999999999876568999999999999999999999999999999999999
Q ss_pred CccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCCcc
Q 006969 319 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTY 398 (623)
Q Consensus 319 ERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~~Y 398 (623)
||+||++||+|+++|+.+.+ .+|+.+++|++.|.+++++|++++|+++++++||||+|||+|||||||||++|||.+|
T Consensus 231 ERaGNa~le~vv~~L~~~~~--~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~h~sGiH~dgi~k~~~~Y 308 (494)
T TIGR00973 231 ERAGNAALEEVVMALKVRKD--FLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFAHESGIHQDGVLKNKETY 308 (494)
T ss_pred ccccCccHHHHHHHHHHhcc--cCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccc
Confidence 99999999999999987532 2488999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHhcC-Cc
Q 006969 399 EIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQ-PE 477 (623)
Q Consensus 399 e~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~~v~d~dl~~L~~~~~~~-~~ 477 (623)
|||+||+||++++ +|++||||||++|+++|+++|++++++++.+++++||+++++++.++++||+.|+.+.+.. ..
T Consensus 309 e~~~Pe~vG~~~~---~i~lg~~SG~~~i~~~l~~~g~~l~~~~~~~~~~~vk~~~~~~~~~~~~~l~~l~~~~~~~~~~ 385 (494)
T TIGR00973 309 EIMSPEDIGLTAE---QLVLGKHSGRHAFKDRLEELGFKLDDEELDKLFEKFKELADKKKEVTDEDLEALVFEEKRQEPE 385 (494)
T ss_pred cCCCHHHcCCcce---eEEecccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccccC
Confidence 9999999997542 5999999999999999999999999999999999999999998899999999999888863 35
Q ss_pred ceeEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEecCHHHHHHHHHHHhhCCCceeeeeEEeecCCCCCceEEEEEE
Q 006969 478 VVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVL 557 (623)
Q Consensus 478 ~~~~L~~~~v~~g~~~~~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~~~~~~~v~L~dY~v~av~~G~dA~a~~~V~ 557 (623)
++|+|.+|+|.+++...++|+|++. ++|++++.+++|||||||+++||+++++.+++|.||++|++++|+||+++++|+
T Consensus 386 ~~~~l~~~~v~~~~~~~~~a~v~~~-~~g~~~~~~~~G~GpvdA~~~Al~~~~~~~~~l~dy~~~~~~~gt~a~~~v~i~ 464 (494)
T TIGR00973 386 EGYKLLHFQVHSGTNQVPTATVKLK-NGGEKREAAATGNGPVDAVYKAINRALGIEVELLEYSITAVGEGKDALGQVDVV 464 (494)
T ss_pred CcEEEEEEEEEECCCCCcEEEEEEE-ECCEEEEEEEEecCHHHHHHHHHHHHhCCCCEEEEEEEECCCCCCCeEEEEEEE
Confidence 6899999999999777899999998 899999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHH
Q 006969 558 IRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALN 601 (623)
Q Consensus 558 i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N 601 (623)
++. +++.|||+|+|+||++||++||++|+|
T Consensus 465 ~~~--------------~~~~~~~~g~~~dii~As~~A~~~a~N 494 (494)
T TIGR00973 465 LRH--------------NGVKYSGRGVATDIVEASAKAYLNALN 494 (494)
T ss_pred EEe--------------CCeEEEEEEeCcCHHHHHHHHHHHhhC
Confidence 984 368999999999999999999999998
No 3
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=7.2e-122 Score=1023.94 Aligned_cols=504 Identities=56% Similarity=0.840 Sum_probs=477.5
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEe
Q 006969 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (623)
Q Consensus 77 ~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 156 (623)
|++|+|+|||||||+|++|++||+++|++|++.|+++||++||+|||.++|+|+++++.+++... .+.+++
T Consensus 2 ~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~---------~~~i~a 72 (513)
T PRK00915 2 MDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVK---------NSTVCG 72 (513)
T ss_pred CCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCC---------CCEEEE
Confidence 35699999999999999999999999999999999999999999999999999999999987532 258999
Q ss_pred ecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHH
Q 006969 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (623)
Q Consensus 157 ~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l 236 (623)
|+|++.+||++++++++.++.++|++|+++||+|+++++|+|++|+++++.++|++||++|.+ |+|++||++|+|++|+
T Consensus 73 ~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~f~~ed~~r~d~~~l 151 (513)
T PRK00915 73 LARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD-VEFSAEDATRTDLDFL 151 (513)
T ss_pred EccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeCCCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 9999999999999999
Q ss_pred HHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCC
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~G 316 (623)
.++++++.++||++|+||||+|+++|++++++|+.+++++|+.++++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~G 231 (513)
T PRK00915 152 CRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTING 231 (513)
T ss_pred HHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeec
Confidence 99999999999999999999999999999999999999998655689999999999999999999999999999999999
Q ss_pred ccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCC
Q 006969 317 IGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKG 396 (623)
Q Consensus 317 lGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~ 396 (623)
||||+||++||+|+++|+.+.+ .+|+.+++|+++|.+++++|++++|+++++++||||+|||+|||||||||++|||.
T Consensus 232 lGERaGNa~lE~vv~~L~~~~~--~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~h~sGiH~dgi~k~~~ 309 (513)
T PRK00915 232 IGERAGNAALEEVVMALKTRKD--IYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGIHQDGVLKNRE 309 (513)
T ss_pred ccccccCccHHHHHHHHHhhhc--ccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHHhccchhHHHHcCCcc
Confidence 9999999999999999987532 23889999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHhc-C
Q 006969 397 TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIF-Q 475 (623)
Q Consensus 397 ~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~~v~d~dl~~L~~~~~~-~ 475 (623)
+||||+||+||+++ .+|+|||||||++|+++|+++|++++++++.+++++||+++++++.++++||+.|+++.+. .
T Consensus 310 ~Ye~~~Pe~vG~~~---~~i~lg~~SG~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~l~~l~~~~~~~~ 386 (513)
T PRK00915 310 TYEIMTPESVGLKA---NRLVLGKHSGRHAFKHRLEELGYKLSDEELDKAFERFKELADKKKEVFDEDLEALVEDETQQE 386 (513)
T ss_pred cccccCHHHcCCcc---eEEEeccccCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHhccc
Confidence 99999999999982 2599999999999999999999999999999999999999999888999999999999887 5
Q ss_pred CcceeEEeeEEEEeccCCeeEEEEEE-EccCCeEEEEEEEecCHHHHHHHHHHHhhCCCceeeeeEEeecCCCCCceEEE
Q 006969 476 PEVVWKLLDMQVTCGTLGLSTATVKL-MDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATT 554 (623)
Q Consensus 476 ~~~~~~L~~~~v~~g~~~~~~AtV~l-~~~~G~~~~~~a~G~GPVdA~~~AL~~~~~~~v~L~dY~v~av~~G~dA~a~~ 554 (623)
..++|+|++|+|.++....++|+|++ . ++|+.++.+++|||||||+++||+++++.+++|.||++|++++|+||++.+
T Consensus 387 ~~~~~~l~~~~v~~~~~~~~~a~v~~~~-~~g~~~~~~~~G~GpvdA~~~Al~~~~~~~~~L~dy~v~~~~~gt~a~~~v 465 (513)
T PRK00915 387 EPEHYKLESLQVQSGSSGTPTATVKLRD-IDGEEKEEAATGNGPVDAVYNAINRIVGSDIELLEYSVNAITGGTDALGEV 465 (513)
T ss_pred CCccEEEEEEEEEECCCCceEEEEEEEE-ECCEEEEEEEecCccHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCeEEEE
Confidence 66789999999999877789999999 7 899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHhhhcccccC
Q 006969 555 RVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFKDQL 610 (623)
Q Consensus 555 ~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~~~~~ 610 (623)
+|+++. +++.|||+|+|+||++||++||++|+|+++..++..
T Consensus 466 ~I~~~~--------------~~~~~~g~g~~~dIi~AS~~A~i~a~n~~~~~~~~~ 507 (513)
T PRK00915 466 TVRLEY--------------DGRIVHGRGADTDIVEASAKAYLNALNKLLRAKEVA 507 (513)
T ss_pred EEEEEe--------------CCeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999984 368999999999999999999999999998866544
No 4
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=7e-121 Score=1008.27 Aligned_cols=484 Identities=46% Similarity=0.668 Sum_probs=461.3
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeec
Q 006969 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (623)
Q Consensus 79 ~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 158 (623)
+|+|+|||||||+|++|++|+.++|++|++.|+++|||+||+|||.++++|+++++.+.+.. +.+.+++|+
T Consensus 2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~---------~~~~i~a~~ 72 (488)
T PRK09389 2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEG---------LNAEICSFA 72 (488)
T ss_pred ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcC---------CCcEEEeec
Confidence 48999999999999999999999999999999999999999999999999999999998742 236899999
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHH
Q 006969 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 159 r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~ 238 (623)
|++++||++++++ |.++||+|+++||+|+++++++|++|+++++.+++++||++|.. |+|++||++|++++|+.+
T Consensus 73 r~~~~di~~a~~~----g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~~~~ed~~r~~~~~l~~ 147 (488)
T PRK09389 73 RAVKVDIDAALEC----DVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLI-VELSGEDASRADLDFLKE 147 (488)
T ss_pred ccCHHHHHHHHhC----CcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEeeCCCCCHHHHHH
Confidence 9999999998875 88999999999999999999999999999999999999999985 999999999999999999
Q ss_pred HHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCcc
Q 006969 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlG 318 (623)
+++++.++|+++|+||||+|+++|.+++++|+.++++++ ++|++|||||+|||+||+++|+++||++||+|++|||
T Consensus 148 ~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~----v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiG 223 (488)
T PRK09389 148 LYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK----GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIG 223 (488)
T ss_pred HHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC----CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEccccc
Confidence 999999999999999999999999999999999998764 6899999999999999999999999999999999999
Q ss_pred CccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCCcc
Q 006969 319 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTY 398 (623)
Q Consensus 319 ERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~~Y 398 (623)
||+||++||+|+++|+.. +|+.+++|++.|.+++++|++++|+++++++||||+|||+|||||||||++|||.+|
T Consensus 224 ERaGNa~lE~lv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Y 298 (488)
T PRK09389 224 ERAGNASLEEVVMALKHL-----YDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGIHVDGLLKDTETY 298 (488)
T ss_pred ccccCccHHHHHHHHHhh-----cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcchhhHHHHhCCcccC
Confidence 999999999999999752 488999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHhcCC-c
Q 006969 399 EIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQP-E 477 (623)
Q Consensus 399 e~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~~v~d~dl~~L~~~~~~~~-~ 477 (623)
|||+|++||++|+ ++|||||||++|+++|+++|++++++++.+++++||++++++++++++||+.|+++.+... +
T Consensus 299 e~~~P~~vG~~~~----~~lg~~SG~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~~~~~~ 374 (488)
T PRK09389 299 EPITPETVGRERR----IVLGKHAGRAALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVLGIERE 374 (488)
T ss_pred CCCCHHHcCCccc----ccccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhhcCC
Confidence 9999999999874 9999999999999999999999999999999999999999998999999999999888665 5
Q ss_pred ceeEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEecCHHHHHHHHHHHhhC--CCceeeeeEEeecCCCCCceEEEE
Q 006969 478 VVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVK--EPATLLEYSMNAVTAGIDAIATTR 555 (623)
Q Consensus 478 ~~~~L~~~~v~~g~~~~~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~~~~~--~~v~L~dY~v~av~~G~dA~a~~~ 555 (623)
++|+|.+|+|.++....++|+|++. ++|++++.+++|||||||+++||+++++ .+++|.||++|++++|+||+++++
T Consensus 375 ~~~~l~~~~v~~~~~~~~~a~v~~~-~~g~~~~~~~~G~GpvdA~~~Al~~~~~~~~~~~l~dy~v~~~~~gt~a~~~v~ 453 (488)
T PRK09389 375 RKVKLDELTVVSGNKVTPTASVKLN-VDGEEIVEAGTGVGPVDAAINAVRKALSGVADIELEEYHVDAITGGTDALVEVE 453 (488)
T ss_pred CCEEEEEEEEEECCCCCcEEEEEEE-ECCEEEEEEEEecCHHHHHHHHHHHHhCCCCCeEEEEEEEEcCCCCCceEEEEE
Confidence 7899999999999877899999998 8999999999999999999999999997 479999999999999999999999
Q ss_pred EEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHhhh
Q 006969 556 VLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKML 604 (623)
Q Consensus 556 V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~ 604 (623)
|+++. +++.|||+|+|+||++|||+||++|+||++
T Consensus 454 i~~~~--------------~~~~~~g~g~~~dii~As~~A~~~a~n~~~ 488 (488)
T PRK09389 454 VKLSR--------------GDRVVTVRGADADIIMASVEAMMDGINRLL 488 (488)
T ss_pred EEEEE--------------CCEEEEEEEcCccHHHHHHHHHHHHHHhhC
Confidence 99984 368899999999999999999999999975
No 5
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=8.6e-119 Score=1002.78 Aligned_cols=497 Identities=28% Similarity=0.375 Sum_probs=461.7
Q ss_pred CceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEee
Q 006969 78 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 157 (623)
+++.|+|||||||+|++|++|++++|++|+++|+++|||+||+|||.+++.|+++++.|++... ..+ .+.+++|
T Consensus 29 ~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~s~~e~e~v~~i~~~~~--~~~----~~~i~~l 102 (552)
T PRK03739 29 KAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPSASQTDFDFVRELIEEGL--IPD----DVTIQVL 102 (552)
T ss_pred CCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcChHHHHHHHHHHHhcC--CCC----CCEEEEE
Confidence 5689999999999999999999999999999999999999999999999999999999987511 011 1589999
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC------eEEEcccCCCCC
Q 006969 158 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD------DVEFSPEDAGRS 231 (623)
Q Consensus 158 ~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~------~V~f~~eda~r~ 231 (623)
+|+++.||+++++++++++.++||+|+++||+|+++++++|++|+++++.++|+|++++|.. .|.|++||++|+
T Consensus 103 ~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~ 182 (552)
T PRK03739 103 TQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGT 182 (552)
T ss_pred eccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCC
Confidence 99999999999999998888899999999999999999999999999999999999998821 379999999999
Q ss_pred CHHHHHHHHHHHHHc---CCc---EEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 006969 232 DRKFLYEILGEVIKV---GAT---TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (623)
Q Consensus 232 d~e~l~~~~~~~~~a---Ga~---~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 305 (623)
|++|++++++++.++ |++ +|+||||+|+++|.+++++|+.+++++|...+++|++|||||+|||+||+++|+++
T Consensus 183 d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~a 262 (552)
T PRK03739 183 ELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMA 262 (552)
T ss_pred CHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHh
Confidence 999999999998874 544 69999999999999999999999999986666899999999999999999999999
Q ss_pred CCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccc
Q 006969 306 GARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESG 385 (623)
Q Consensus 306 GA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sG 385 (623)
||++||+|+||+|||+||++||+|+++|+. +|+.+++|+++|.++|++|++++|+++++|+||||+|||+||||
T Consensus 263 Ga~~v~gtvnG~GERaGNa~le~vv~~L~~------~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~hesG 336 (552)
T PRK03739 263 GADRVEGCLFGNGERTGNVDLVTLALNLYT------QGVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFTAFSG 336 (552)
T ss_pred CCCEEEeeCCcCcccccChhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhccc
Confidence 999999999999999999999999999975 37889999999999999999999999999999999999999999
Q ss_pred cccccccccCC-----------ccccCCCcccCCcccccceEeeeccccHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHH
Q 006969 386 IHQDGMLKHKG-----------TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLK-ELGYELNDEQLGTIFWHFKAV 453 (623)
Q Consensus 386 iH~dgi~k~~~-----------~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~-~lG~~l~~~~~~~~~~~iK~l 453 (623)
|||||++|||. +||||+|++||++|+ ..|++||||||++|+++|+ ++|++++++++..++.+||++
T Consensus 337 iH~dgilk~~~~~~~~~~~~~~~Ye~~~Pe~vG~~~~--~~i~lgk~SG~~~i~~~l~~~lG~~l~~~~~~~~~~~vk~~ 414 (552)
T PRK03739 337 SHQDAIKKGFAAQKADAIVWEVPYLPIDPADVGRSYE--AVIRVNSQSGKGGVAYLLEQDYGLDLPRRLQIEFSRVVQAV 414 (552)
T ss_pred hhHHHHhcCchhcccccccccccccccCHHHhCCcce--eEEEecccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999998 899999999999874 2478999999999999998 699999999999999999999
Q ss_pred HHh-cCcCCHHHHHHHHHHHhcC-CcceeEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEecCHHHHHHHHHHHhhC
Q 006969 454 AEQ-KKRVTDADLIALVSDEIFQ-PEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVK 531 (623)
Q Consensus 454 ad~-~~~v~d~dl~~L~~~~~~~-~~~~~~L~~~~v~~g~~~~~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~~~~~ 531 (623)
+++ ++.++++||..|+.+.+.. .+++|+|.+|++ ++....++|+|+|. ++|++++.+++|||||||+++||+++++
T Consensus 415 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~v-~~~~~~~~A~V~l~-v~g~~~~~~a~G~GPVdAl~~AL~~~~~ 492 (552)
T PRK03739 415 TDAEGGELSAEEIWDLFEREYLAPRGRPVLLRVHRL-SEEDGTRTITAEVD-VNGEERTIEGEGNGPIDAFVNALSQALG 492 (552)
T ss_pred HHHhCCCcCHHHHHHHHHHHhhccCCCcEEEEEEEE-ecCCCCcEEEEEEE-ECCEEEEEEEEeCCHHHHHHHHHHHHhC
Confidence 988 5679999999999877754 356899999999 46666799999998 7999999999999999999999999999
Q ss_pred CCceeeeeEEeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHhhh
Q 006969 532 EPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKML 604 (623)
Q Consensus 532 ~~v~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~ 604 (623)
.+++|.||+++++++|+||+++|+|.++. +++.+||+|+|+||++||++||++|+||++
T Consensus 493 ~~v~L~dY~v~al~~GtdA~~~v~I~~~~--------------~g~~~~G~Gvs~DIi~AS~~Ali~a~n~l~ 551 (552)
T PRK03739 493 VDVRVLDYEEHALGAGSDAQAAAYVELRV--------------GGRTVFGVGIDANIVTASLKAVVSAVNRAL 551 (552)
T ss_pred CCcEEEEEEEEccCCCCCeEEEEEEEEEE--------------CCeEEEEEEeCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999984 367899999999999999999999999986
No 6
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=2.5e-118 Score=1001.21 Aligned_cols=504 Identities=26% Similarity=0.332 Sum_probs=466.0
Q ss_pred CceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEee
Q 006969 78 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 157 (623)
+.+.|+|||||||+|++|++|++++|++|++.|+++|||+||+|||.+++.|+++++++.+... +.+ .+.+++|
T Consensus 25 ~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s~~D~e~v~~i~~~~l--~~~----~~~i~al 98 (564)
T TIGR00970 25 RAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSASQTDFDFVREIIEQGA--IPD----DVTIQVL 98 (564)
T ss_pred cCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--CCC----CcEEEEE
Confidence 5689999999999999999999999999999999999999999999999999999999987521 001 1589999
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---------eEEEcccCC
Q 006969 158 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---------DVEFSPEDA 228 (623)
Q Consensus 158 ~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~---------~V~f~~eda 228 (623)
+|+++.||+++++++++++.++||+|+++||+|+++++|+|++|+++++.++|+++|++|.. .|.|++||+
T Consensus 99 ~~~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~ 178 (564)
T TIGR00970 99 TQSREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESF 178 (564)
T ss_pred cCCchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccC
Confidence 99999999999999988888899999999999999999999999999999999999999752 488999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC------cEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 006969 229 GRSDRKFLYEILGEVIKVGA------TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa------~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 302 (623)
+|+|++|++++++++.++|+ ++|+||||+|+++|.+++++|+.+++++|...+++|++|||||+|||+||+++|
T Consensus 179 ~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaA 258 (564)
T TIGR00970 179 SDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELG 258 (564)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHH
Confidence 99999999999999999997 499999999999999999999999999987667899999999999999999999
Q ss_pred HHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhc
Q 006969 303 ACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAH 382 (623)
Q Consensus 303 v~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h 382 (623)
+++||++||||+||+|||+||++||+|+++|+. +|+.+++|++.|.++++++++++|++++||+||||+|||+|
T Consensus 259 v~aGa~~v~gt~~G~GERaGNa~le~lv~~L~~------~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~h 332 (564)
T TIGR00970 259 FLAGADRIEGCLFGNGERTGNVDLVTLALNLYT------QGVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYTA 332 (564)
T ss_pred HHhCCCEEEeecCcCCccccCccHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhhh
Confidence 999999999999999999999999999999986 37889999999999999999999999999999999999999
Q ss_pred ccccccccccccCC---------------ccccCCCcccCCcccccceEeeeccccHHHHHHHHH-HcCCCCCHHHHHHH
Q 006969 383 ESGIHQDGMLKHKG---------------TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLK-ELGYELNDEQLGTI 446 (623)
Q Consensus 383 ~sGiH~dgi~k~~~---------------~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~-~lG~~l~~~~~~~~ 446 (623)
+|||||||++|++. +||||+|++||++|+ ..|+||+||||++|+++|+ ++|++++++++..+
T Consensus 333 ~SGiH~dai~K~~~~~~~~~~~~~~~~~~~Ye~~~Pe~vG~~~~--~~i~lg~~SGk~~i~~~l~~~~G~~l~~~~~~~~ 410 (564)
T TIGR00970 333 FSGSHQDAINKGLDAMKLDAAAADMLWQVPYLPLDPRDVGRTYE--AVIRVNSQSGKGGVAYIMKTDHGLDLPRRLQIEF 410 (564)
T ss_pred ccchhHHHHhcCchhhcccccccccccccccccCCHHHhCCccc--cEEEccccccHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999976 999999999999863 3599999999999999996 79999999999999
Q ss_pred HHHHHHHHH-hcCcCCHHHHHHHHHHHhcCC---cceeEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEecCHHHHH
Q 006969 447 FWHFKAVAE-QKKRVTDADLIALVSDEIFQP---EVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSA 522 (623)
Q Consensus 447 ~~~iK~lad-~~~~v~d~dl~~L~~~~~~~~---~~~~~L~~~~v~~g~~~~~~AtV~l~~~~G~~~~~~a~G~GPVdA~ 522 (623)
+.+||++++ ++++++++||..|+.+.|... +..|+|.+|++.++....+++++++. ++|++++.+++|||||||+
T Consensus 411 ~~~vk~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~a~~~l~-v~g~~~~~~a~GnGPVdAl 489 (564)
T TIGR00970 411 SSVVQDIADGEGGELSPKEISDLFAEEYLAPVEPLERISQHVYAADDDGTGTTSITATVK-INGVETDIEGSGNGPLSAL 489 (564)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCcEEEEEEEEEeCCCCceEEEEEEE-ECCEEEEEEEEecCHHHHH
Confidence 999999998 556799999999998888652 45799999999887666688888887 8999999999999999999
Q ss_pred HHHHHHhhCCCceeeeeEEeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHh
Q 006969 523 YKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNK 602 (623)
Q Consensus 523 ~~AL~~~~~~~v~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~ 602 (623)
++||+++++.+++|.||++|++++|+||+|+|+|+|+.+++. ..+++.+||+|+|+||++||++||++|+||
T Consensus 490 ~~AL~~~~~~~~~L~dY~v~al~~g~~a~a~v~V~i~~~~~~--------~~~g~~~~GvGvs~DIi~AS~~Ali~AlNr 561 (564)
T TIGR00970 490 VDALADVGNFDFAVLDYYEHAMGSGDDAQAASYVEASVTIAS--------PAQPGTVWGVGIAPDVTTASLRAVVSAVNR 561 (564)
T ss_pred HHHHHHHHCCCeEEEEEEEEecCCCCCceEEEEEEEEECCcc--------CCCCCeEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999853100 012688999999999999999999999999
Q ss_pred hh
Q 006969 603 ML 604 (623)
Q Consensus 603 l~ 604 (623)
+.
T Consensus 562 l~ 563 (564)
T TIGR00970 562 AA 563 (564)
T ss_pred hc
Confidence 75
No 7
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=1.3e-118 Score=996.35 Aligned_cols=494 Identities=26% Similarity=0.412 Sum_probs=455.8
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeec
Q 006969 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (623)
Q Consensus 79 ~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 158 (623)
+|+|+|||||||+|++|++|++++|++|++.|+++|||+||+|||.+||+|++++++|++.... .+.|++|+
T Consensus 1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~--------~~~i~~~~ 72 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFK--------NAKIVAFC 72 (526)
T ss_pred CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCC--------CcEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999874211 26899999
Q ss_pred ccchh----hHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc---CCCCC
Q 006969 159 RCNER----DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRS 231 (623)
Q Consensus 159 r~~~~----dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e---da~r~ 231 (623)
|++++ ++++.++++++++.++||+|+++||+|++++|++|++|+++++.++|+|||++|.+ |+|++| |++|+
T Consensus 73 r~~r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~-V~~~~e~f~D~~r~ 151 (526)
T TIGR00977 73 STRRPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDE-VIYDAEHFFDGYKA 151 (526)
T ss_pred eecCCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeeeecccC
Confidence 98877 55888999999999999999999999999999999999999999999999999985 899999 88999
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
+++|+.++++++.++||++|+||||+|+++|.+++++|+.+++++|. .+|++|||||+|||+||+++|+++||++||
T Consensus 152 ~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~---~~i~vH~HND~GlAvANslaAv~AGA~~Vd 228 (526)
T TIGR00977 152 NPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQ---PQLGIHAHNDSGTAVANSLLAVEAGATMVQ 228 (526)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCC---CEEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999873 569999999999999999999999999999
Q ss_pred eccCCccCccCcccHHHHHHHHHhcccccccccc--cCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccc
Q 006969 312 VTINGIGERAGNASLEEVVMAFKCRGEHILGGLY--TGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQD 389 (623)
Q Consensus 312 ~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~--t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~d 389 (623)
+|+|||||||||++||+++++|..+ +|+. |++|+++|.++|++|++++|+++++++||||+|||+||||||||
T Consensus 229 ~TinGiGERaGNa~Le~v~~~L~~~-----~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~d 303 (526)
T TIGR00977 229 GTINGYGERCGNANLCSLIPNLQLK-----LGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAHKGGVHVS 303 (526)
T ss_pred EecccccCccCCCcHHHHHHHHHhh-----cCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeeeeccccHH
Confidence 9999999999999999999999864 2444 79999999999999999999999999999999999999999999
Q ss_pred cccccCCccccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHhcCcCC--HHHH
Q 006969 390 GMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELND--EQLGTIFWHFKAVAEQKKRVT--DADL 465 (623)
Q Consensus 390 gi~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~--~~~~~~~~~iK~lad~~~~v~--d~dl 465 (623)
|++|||.+||||+|++||++| +|+|||||||++|+++|+++|+++++ +++.+++++||++++++++++ +++|
T Consensus 304 gi~k~~~~Ye~~~Pe~vG~~~----~i~lg~~SG~~~v~~~l~~~g~~l~~~~~~~~~~~~~vk~~~~~g~~~~~a~~~~ 379 (526)
T TIGR00977 304 AVQRNPFTYEHIAPELVGNER----RIVVSELAGLSNVLSKAKEFGIEIDRQSPACRTILAKIKELEQQGYHFEAAEASF 379 (526)
T ss_pred HHhCCccccccCCHHHcCCcc----EEEEecccCHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHCCcEEeccHHHH
Confidence 999999999999999999986 49999999999999999999999987 689999999999999999988 9999
Q ss_pred HHHHHHHhcCCcceeEEeeEEEEeccCC------eeEEEEEEEccCCeEEEEEEEecCHHHHHHHHHHHhhC------CC
Q 006969 466 IALVSDEIFQPEVVWKLLDMQVTCGTLG------LSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVK------EP 533 (623)
Q Consensus 466 ~~L~~~~~~~~~~~~~L~~~~v~~g~~~------~~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~~~~~------~~ 533 (623)
+.|+++.+....+.|+|.+|+|.+++.. .++|+|++. ++|++++.+++|||||||+++||+++++ .+
T Consensus 380 ~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~a~v~~~-~~g~~~~~~a~G~GpvdA~~~Al~~~~~~~~~~~~~ 458 (526)
T TIGR00977 380 ELLMRQAMGDRKPYFLFQGFQVHCDKLRDAESYRNALATVRVT-VEGQNEHTAAEGNGPVSALDRALRKALERFYPQLKD 458 (526)
T ss_pred HHHHHHHhccCCCcEEEEEEEEEEcCCCCccCCCCcEEEEEEE-ECCEEEEEEEEcCCHHHHHHHHHHHHhhhcccccCc
Confidence 9999666655556799999999988653 689999998 8999999999999999999999999987 45
Q ss_pred ceeeeeEEeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHhhhcc
Q 006969 534 ATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGF 606 (623)
Q Consensus 534 v~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~ 606 (623)
++|.||++|++++|+++.|.++|.|+..+ +++.|.|+|+|+||++|||+||++|+|+-|..
T Consensus 459 ~~l~dy~v~~~~~~~gt~A~~~v~i~~~~------------~~~~~~~~g~~~dii~As~~A~~~a~n~~~~~ 519 (526)
T TIGR00977 459 FHLTDYKVRILNEGAGTSAKTRVLIESSD------------GKRRWGTVGVSGNIIEASWQALVESIEYKLRK 519 (526)
T ss_pred eEEEEEEEEecCCCCCCcEEEEEEEEEec------------CCeEEEEEEcccCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999996666666677776431 36788899999999999999999999988754
No 8
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-119 Score=941.60 Aligned_cols=508 Identities=55% Similarity=0.822 Sum_probs=470.0
Q ss_pred CCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCc
Q 006969 71 PNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY 150 (623)
Q Consensus 71 ~~~~~~~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l 150 (623)
|+...+++.++++|+|||||+|++|..|++++|++|+++|+.+|||+||+|||.+|++||++++.+++.. ++
T Consensus 49 ~~~l~~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~--------g~ 120 (560)
T KOG2367|consen 49 PNDLSDVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTL--------GY 120 (560)
T ss_pred CccccCcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCcchHHHHHHHHHhC--------CC
Confidence 4455568899999999999999999999999999999999999999999999999999999999999853 56
Q ss_pred cceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCC
Q 006969 151 VPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR 230 (623)
Q Consensus 151 ~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r 230 (623)
++.||++.||+++||+++||++++++.++||+|+++||+|++++++||++|+++++.++++++|++|+..++|+|||++|
T Consensus 121 ~~~I~~l~rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~r 200 (560)
T KOG2367|consen 121 VPVICTLIRCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGR 200 (560)
T ss_pred CceEEEeeccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECcccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999997779999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
++++|++++++++.++|+.+++||||||+++|.++++||++++.++|+++++.|+.|||||+|||+||++.+++|||++|
T Consensus 201 se~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~V 280 (560)
T KOG2367|consen 201 SELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQV 280 (560)
T ss_pred CcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhccccccccc
Q 006969 311 EVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDG 390 (623)
Q Consensus 311 d~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg 390 (623)
|+||+|+|||+||+||++|+|+|..+|.++ +...+++.+|.++.++|+++.++++|||+||+|.++|+|+|||||||
T Consensus 281 E~~i~GiGERtGn~~L~~v~m~my~~g~~~---vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Fth~SGiHqda 357 (560)
T KOG2367|consen 281 EVTINGIGERTGNAPLEEVVMAMYCRGPDY---VSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFTHESGIHQDA 357 (560)
T ss_pred EEEeeccccccCCCCHHHHHHHheecCchh---cCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEeecccccHHH
Confidence 999999999999999999999999987544 45677777778888899999999999999999999999999999999
Q ss_pred ccccCCccccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCC-HHHHHHHH
Q 006969 391 MLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVT-DADLIALV 469 (623)
Q Consensus 391 i~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~~v~-d~dl~~L~ 469 (623)
|+|+|.+|||+||++||++| +..|++|++|||++++++|++||++|+++++.+++.+||++++++++.. -+|+..++
T Consensus 358 Ilk~r~tYeiLdPeDiG~~~--~a~i~~n~lSG~~avk~rl~~Lgl~L~d~~~~e~~s~~k~lad~k~R~l~~d~i~~v~ 435 (560)
T KOG2367|consen 358 ILKNRSTYEILDPEDIGMER--EAGIVLNKLSGRHAVKDRLKQLGLDLPDEQQKEFFSRIKKLADQKKRELDADEIALVF 435 (560)
T ss_pred HhcCCCCcccCChHHcCcce--eeeEEeccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Confidence 99999999999999999987 5689999999999999999999999999999999999999999988754 45555666
Q ss_pred HHHhcCCcceeEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEecCHHHHHHHHHHHhhCCCceeeeeEEeecCCCCC
Q 006969 470 SDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGID 549 (623)
Q Consensus 470 ~~~~~~~~~~~~L~~~~v~~g~~~~~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~~~~~~~v~L~dY~v~av~~G~d 549 (623)
.+.|......++|.+|. .+|.++.+.+.+...+++|+.+..++.|||||+|+++||+.+++.++.+.+|++|++++|+|
T Consensus 436 ~e~~~~e~~~~~L~~~~-~~g~~~~~~~~~~~vd~~~~~~v~~~vgngpis~lvdal~~~~n~~~~~~~yseha~gsg~~ 514 (560)
T KOG2367|consen 436 KETYAYESSAESLNNYI-VKGTNGLSRAIVGQVDIDGKIVVIEGVGNGPISSLVDALSNLLNVPFTVLNYSEHALGSGSD 514 (560)
T ss_pred HHhhhccccHHHHhhhh-hccCCccccceeeeeecCCceeeeeccCCCcHHHHHHHHHHHhcCchhHhhhhhhhhccCcc
Confidence 66554444445566654 46666667777777778999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHhhhcc
Q 006969 550 AIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGF 606 (623)
Q Consensus 550 A~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~ 606 (623)
++|.+||.|.+.| .++||+|+++|+..|+++|+++.+|++...
T Consensus 515 ~~aas~v~i~~~~--------------~~~wgvg~~~d~~~a~~~av~s~v~~~~~a 557 (560)
T KOG2367|consen 515 TQAASYVLISYYN--------------NTNWGVGVSEDVTDAGMKAVFSTVNNIIHA 557 (560)
T ss_pred cceeeEEEEEeec--------------ccccceeeecccCCchHHHHHHHHHHHHhc
Confidence 9999999999742 346999999999999999999999998653
No 9
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=1.3e-114 Score=965.58 Aligned_cols=498 Identities=29% Similarity=0.460 Sum_probs=454.7
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEe
Q 006969 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (623)
Q Consensus 77 ~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 156 (623)
|++|+|+|||||||+|+++++|++++|++|++.|+++||++||+|||+++|+|++++++|.+.... .+.+++
T Consensus 3 ~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~--------~~~i~~ 74 (524)
T PRK12344 3 MERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLK--------HAKLAA 74 (524)
T ss_pred CCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCC--------CcEEEE
Confidence 356999999999999999999999999999999999999999999999999999999999873100 157999
Q ss_pred ecccchhhH----HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc---CCC
Q 006969 157 LSRCNERDI----KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAG 229 (623)
Q Consensus 157 ~~r~~~~dI----~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e---da~ 229 (623)
|+|+.+.|+ ++.+++++.++.++||+|+++||+|+++++|+|++|+++++.+++++||++|.+ |+|++| |++
T Consensus 75 ~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~-v~~~~e~~~Da~ 153 (524)
T PRK12344 75 FGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGRE-VIFDAEHFFDGY 153 (524)
T ss_pred EeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEccccccccc
Confidence 999988777 678888889999999999999999999999999999999999999999999985 999999 889
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 006969 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 309 (623)
|+|++|++++++++.++||++|+||||+|+++|.+++++|+.+++++ +++|++|||||+|||+||+++|+++||++
T Consensus 154 r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~----~v~i~~H~HND~GlA~ANslaAi~aGa~~ 229 (524)
T PRK12344 154 KANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP----GVPLGIHAHNDSGCAVANSLAAVEAGARQ 229 (524)
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc----CCeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999988 37899999999999999999999999999
Q ss_pred EEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccc
Q 006969 310 VEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQD 389 (623)
Q Consensus 310 Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~d 389 (623)
||+|++|||||+||++||+|+++|..+.. ..+.|++|+++|.+++++|++++|+++++++||||+|+|+||||||||
T Consensus 230 Vd~Tl~GlGERaGNa~lE~lv~~L~~~~g---~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~h~SGiH~d 306 (524)
T PRK12344 230 VQGTINGYGERCGNANLCSIIPNLQLKMG---YECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGGIHVS 306 (524)
T ss_pred EEEecccccccccCcCHHHHHHHHHhccC---CCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhhhhccccHH
Confidence 99999999999999999999999986421 125589999999999999999999999999999999999999999999
Q ss_pred cccccCCccccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHhcCcCCHH--HH
Q 006969 390 GMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYEL--NDEQLGTIFWHFKAVAEQKKRVTDA--DL 465 (623)
Q Consensus 390 gi~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l--~~~~~~~~~~~iK~lad~~~~v~d~--dl 465 (623)
|++|||.+||||+|++||++|. |++|||||+++|+++|+++|+++ +++++.+++++||+++++|++++++ ++
T Consensus 307 gi~k~~~~Ye~~~P~~vG~~~~----i~lg~~SG~~~i~~~l~~~g~~l~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~ 382 (524)
T PRK12344 307 AVLKDPRTYEHIDPELVGNRRR----VLVSELAGRSNILAKAKELGIDLDKDDPRLKRLLERIKELEAEGYQFEAAEASF 382 (524)
T ss_pred HHhCCcccccCCCHHHhCCccc----ccccchhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHcCCcEEechHHHH
Confidence 9999999999999999998764 99999999999999999999999 6889999999999999999988754 88
Q ss_pred HHHHHHHhcCCcceeEEeeEEEEeccCCe--eEEEEEEEccCCeEEEEEEEecCHHHHHHHHHHHhhC------CCceee
Q 006969 466 IALVSDEIFQPEVVWKLLDMQVTCGTLGL--STATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVK------EPATLL 537 (623)
Q Consensus 466 ~~L~~~~~~~~~~~~~L~~~~v~~g~~~~--~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~~~~~------~~v~L~ 537 (623)
..|+.+.+...+++|+|.+|+|.+++... ++|+|++. ++|+++..+++|||||||+++||+++++ .+++|.
T Consensus 383 ~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~a~v~~~-~~g~~~~~~~~G~GpvdA~~~Al~~~~~~~~~~~~~~~l~ 461 (524)
T PRK12344 383 ELLLRRELGEYPPFFELESFRVIVEKRGDGVSEATVKVR-VGGEREHTAAEGNGPVNALDNALRKALEKFYPELAEVELV 461 (524)
T ss_pred HHHHHHHhccCCCcEEEEEEEEEECCCCCcCcEEEEEEE-ECCEEEEEEEEecCHHHHHHHHHHHHhccccccccccEEE
Confidence 88885555455578999999999987654 89999998 8999999999999999999999999998 569999
Q ss_pred eeEEeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHhhhccc
Q 006969 538 EYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFK 607 (623)
Q Consensus 538 dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~~ 607 (623)
||+++++++|+++.|.++|.|+.+ .+++.|.|+|+|+||++||++||++|+|+.+...
T Consensus 462 ~y~~~~~~~~~~~~a~~~v~i~~~------------~~~~~~~~~g~~~di~~As~~A~~~a~n~~~~~~ 519 (524)
T PRK12344 462 DYKVRILDGGKGTAAVVRVLIEST------------DGKRRWTTVGVSTNIIEASWQALVDSIEYKLLKD 519 (524)
T ss_pred EEEEEcCCCCCCCceEEEEEEEEe------------cCCeEEEEEEccccHHHHHHHHHHHHHHHHHhhc
Confidence 999999999655555555656542 1357899999999999999999999999998664
No 10
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=3.3e-97 Score=815.65 Aligned_cols=408 Identities=68% Similarity=1.121 Sum_probs=381.5
Q ss_pred ccCCCCCCCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccc
Q 006969 64 ATRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNA 143 (623)
Q Consensus 64 ~~~~~~~~~~~~~~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~ 143 (623)
.+-|.|+|+..+++++|+|+|||||||+|++|+.|+.++|++|++.|+++|||+||+|||+++++|+++++.|++..++.
T Consensus 69 ~~~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~ 148 (503)
T PLN03228 69 ERWPEYIPNKLPDKNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNE 148 (503)
T ss_pred hcccccCCcccCCCCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred cccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 006969 144 VDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF 223 (623)
Q Consensus 144 ~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f 223 (623)
.....++.+++++|+||+++||++++++++.++.++|++|+++||+|+++++|+|++|+++++.++|++||++|+..|.|
T Consensus 149 ~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f 228 (503)
T PLN03228 149 VDEETGYVPVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQF 228 (503)
T ss_pred cccccccceEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEe
Confidence 11122567899999999999999999999888999999999999999999999999999999999999999999855899
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 006969 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (623)
Q Consensus 224 ~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 303 (623)
++||++|+|++|+.++++++.++||++|+||||+|+++|++++++|+.+++++|+.++++|++|||||+|||+||+++|+
T Consensus 229 ~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi 308 (503)
T PLN03228 229 GCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGI 308 (503)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999866568999999999999999999999
Q ss_pred HhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcc
Q 006969 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHE 383 (623)
Q Consensus 304 ~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~ 383 (623)
++||++||+|++|||||+||++||+|+++|+.++....+|+++++|++.|.+++++|++++|+++++++||||+|||+||
T Consensus 309 ~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~naF~he 388 (503)
T PLN03228 309 CAGARQVEVTINGIGERSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANCFVHE 388 (503)
T ss_pred HhCCCEEEEeccccccccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHhc
Confidence 99999999999999999999999999999988653333588999999999999999999999999999999999999999
Q ss_pred cccccccccccCCccccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHH
Q 006969 384 SGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDA 463 (623)
Q Consensus 384 sGiH~dgi~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~~v~d~ 463 (623)
|||||||++|||.+||||+||+||+.|..+.++++|||||+++|+++|+++|++++++++.+++++||+++++++.++++
T Consensus 389 SGIH~dgilK~p~tYe~~~Pe~vG~~~~~~~~i~lgk~SG~~av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~ 468 (503)
T PLN03228 389 SGIHQDGILKNRSTYEILSPEDIGIVKSQNSGIVLGKLSGRHAVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDA 468 (503)
T ss_pred cchhHHHHhCCcccccCCCHHHhCCcccccceeecchHhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999985432457999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHH
Q 006969 464 DLIALVSD 471 (623)
Q Consensus 464 dl~~L~~~ 471 (623)
||..|+..
T Consensus 469 el~~i~~~ 476 (503)
T PLN03228 469 DLKALVVN 476 (503)
T ss_pred HHHHHHhc
Confidence 99999765
No 11
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-95 Score=780.33 Aligned_cols=402 Identities=51% Similarity=0.767 Sum_probs=368.5
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeec
Q 006969 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (623)
Q Consensus 79 ~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 158 (623)
+|+|+|||||||+|++|++|++++|++|+++|+++|||+||+|||.+++.|+++++.+....+. . ....++++.
T Consensus 2 ~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~----~~~~~~~~~ 75 (409)
T COG0119 2 KVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--F----ICALIAALA 75 (409)
T ss_pred CcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--c----cchhhhhhH
Confidence 5899999999999999999999999999999999999999999999999999999999853211 0 023444555
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHH
Q 006969 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 159 r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~ 238 (623)
|.. ++.++++..++.++||+|+++||+|+++++++|++|+++++.++++||+++|++ +.|++||++|++++|+++
T Consensus 76 ~~~----~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~-~~~~~Ed~~rt~~~~l~~ 150 (409)
T COG0119 76 RAI----KRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLE-VRFSAEDATRTDPEFLAE 150 (409)
T ss_pred HhH----HhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeccccCCHHHHHH
Confidence 544 444455556699999999999999999999999999999999999999999975 899999999999999999
Q ss_pred HHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCcc
Q 006969 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlG 318 (623)
+++++.++||++|+||||+|+++|++++++|+++++++|+ +++|++|||||+|||||||++|+++||++||+|+||||
T Consensus 151 ~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~--~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiG 228 (409)
T COG0119 151 VVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPN--KVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIG 228 (409)
T ss_pred HHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCC--CCeEEEEecCCcchHHHHHHHHHHcCCcEEEEecccce
Confidence 9999999999999999999999999999999999999985 48999999999999999999999999999999999999
Q ss_pred CccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCCcc
Q 006969 319 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTY 398 (623)
Q Consensus 319 ERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~~Y 398 (623)
||+||++||+++++|..+.. +|+.+++|+.+|+++|++|++++|+++|||+||||+|+|+|+|||||||++|||.+|
T Consensus 229 ERaGna~l~~v~~~l~~~~~---~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFah~sGIH~dgvlkn~~tY 305 (409)
T COG0119 229 ERAGNAALEEVVLALALRKD---YGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFAHESGIHQDGVLKNPETY 305 (409)
T ss_pred eccccccHHHHHHHHHHHhh---cCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHhhcchhHHHHhhCHhhc
Confidence 99999999999998888753 578999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCcccccceEeee-ccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHhcC
Q 006969 399 EIISPEDIGLERSSEAGIVLG-KLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKK--RVTDADLIALVSDEIFQ 475 (623)
Q Consensus 399 e~~~Pe~vG~~r~~~~~i~lg-~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~--~v~d~dl~~L~~~~~~~ 475 (623)
|||+||+||++|. ++++ ++||+++++.+|+++|+++++++++.++.+||+++++++ +++|+||+.|+.+.+..
T Consensus 306 E~i~Pe~VG~~r~----~vi~~~~sg~~~~~~~l~~~g~~~~~~~~~~~~~~vk~l~~~~~~~e~~d~~l~~l~~~~~~~ 381 (409)
T COG0119 306 EPIDPEDVGRRRR----IVIGGKHSGRKAVKAKLEELGIELDEEELDKLFSRVKELADKGKKKEVTDADLEALVEEELGS 381 (409)
T ss_pred CCCCHHHcCCeee----eEeeccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHhcc
Confidence 9999999999885 6666 999999999999999999999999999999999998854 49999999999999876
Q ss_pred C--cceeEEeeEEEEeccCCeeEEEEEEE
Q 006969 476 P--EVVWKLLDMQVTCGTLGLSTATVKLM 502 (623)
Q Consensus 476 ~--~~~~~L~~~~v~~g~~~~~~AtV~l~ 502 (623)
. ...+++..+++.+++ .++|+|++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~--~~~a~v~~~ 408 (409)
T COG0119 382 REPFEKISLDVLTVQSGN--VPTASVKLE 408 (409)
T ss_pred cCcccceeEEEEEEeeCC--CceeEEEEe
Confidence 4 357888889888887 789999874
No 12
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=2e-91 Score=754.11 Aligned_cols=371 Identities=49% Similarity=0.737 Sum_probs=353.6
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEe
Q 006969 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (623)
Q Consensus 77 ~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 156 (623)
|++|+|+|||||||+|++++.|++++|++|++.|+++||++||+|||..++.|++.++.+.+. ++.+.+++
T Consensus 2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~---------~~~~~i~~ 72 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKL---------GLNASILA 72 (378)
T ss_pred CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhc---------CCCeEEEE
Confidence 567999999999999999999999999999999999999999999999999999999999873 23368999
Q ss_pred ecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHH
Q 006969 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (623)
Q Consensus 157 ~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l 236 (623)
|+|++++||++++++ |+++|++|+++||.|+++++|+|++|+++++.+++++|++.|+. |+|++||++|+|++|+
T Consensus 73 ~~r~~~~di~~a~~~----g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~-v~~~~ed~~r~~~~~l 147 (378)
T PRK11858 73 LNRAVKSDIDASIDC----GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLY-VSFSAEDASRTDLDFL 147 (378)
T ss_pred EcccCHHHHHHHHhC----CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeccCCCCCHHHH
Confidence 999999999998875 89999999999999999999999999999999999999999985 9999999999999999
Q ss_pred HHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCC
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~G 316 (623)
.++++++.++|+++|+||||+|+++|++++++|+.++++++ ++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 148 ~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~G 223 (378)
T PRK11858 148 IEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVD----IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNG 223 (378)
T ss_pred HHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecc
Confidence 99999999999999999999999999999999999999882 68999999999999999999999999999999999
Q ss_pred ccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCC
Q 006969 317 IGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKG 396 (623)
Q Consensus 317 lGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~ 396 (623)
||||+||++||+|+++|+.+ +|+.+++|+++|.++++++++++|+++++++||||+|+|+|||||||||++|||.
T Consensus 224 lGeraGNa~lE~vv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGiH~~gi~k~~~ 298 (378)
T PRK11858 224 LGERAGNAALEEVVMALKYL-----YGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPL 298 (378)
T ss_pred ccccccCccHHHHHHHHHHH-----hCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhhccccHHHHhCCcc
Confidence 99999999999999999853 4788999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHhc
Q 006969 397 TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKK-RVTDADLIALVSDEIF 474 (623)
Q Consensus 397 ~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~-~v~d~dl~~L~~~~~~ 474 (623)
+||||+||.||++|+ ++||||||+++|+++|+++|++++++++..++++||+++++++ .++++||..|+++...
T Consensus 299 ~Ye~~~P~~vG~~~~----~~~g~~SG~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~~~ 373 (378)
T PRK11858 299 TYEPFLPEEVGLERR----IVLGKHSGRHALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDVRR 373 (378)
T ss_pred cccccCHHHcCCccc----ccccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 999999999999874 9999999999999999999999999999999999999998875 6999999999987553
No 13
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=1.7e-90 Score=744.27 Aligned_cols=362 Identities=42% Similarity=0.603 Sum_probs=346.1
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecc
Q 006969 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (623)
Q Consensus 80 v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r 159 (623)
|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|||..++.|+++++.+.+... .+.+++|+|
T Consensus 2 v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~---------~~~i~~~~r 72 (365)
T TIGR02660 2 VIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGL---------PARLMAWCR 72 (365)
T ss_pred cEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCC---------CcEEEEEcC
Confidence 78999999999999999999999999999999999999999999999999999999987532 257899999
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHH
Q 006969 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (623)
Q Consensus 160 ~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~ 239 (623)
++.+||++++++ |++.|++|+++||.|+++++|+|++|+++++.++|++||++|+. |+|++||++|++++|+.++
T Consensus 73 ~~~~di~~a~~~----g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~-v~~~~ed~~r~~~~~l~~~ 147 (365)
T TIGR02660 73 ARDADIEAAARC----GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLF-VSVGGEDASRADPDFLVEL 147 (365)
T ss_pred CCHHHHHHHHcC----CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCE-EEEeecCCCCCCHHHHHHH
Confidence 999999988875 89999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred HHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccC
Q 006969 240 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (623)
Q Consensus 240 ~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGE 319 (623)
++++.++|+++|+||||+|+++|++++++|+.++++++ ++|++|||||+|||+||+++|+++||++||+|++||||
T Consensus 148 ~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe 223 (365)
T TIGR02660 148 AEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD----LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE 223 (365)
T ss_pred HHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc
Confidence 99999999999999999999999999999999999873 67999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCCccc
Q 006969 320 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYE 399 (623)
Q Consensus 320 RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye 399 (623)
|+||++||+|+++|+.+ +|+++++|+++|.++++++++++|+++++++||||+|+|+|||||||||++|||.+||
T Consensus 224 raGN~~lE~lv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGiH~~~i~k~~~~Ye 298 (365)
T TIGR02660 224 RAGNAALEEVAMALKRL-----LGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGIHVDGLLKDPRTYE 298 (365)
T ss_pred ccccCCHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccCC
Confidence 99999999999999543 4888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcC-cCCHHHHHHH
Q 006969 400 IISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKK-RVTDADLIAL 468 (623)
Q Consensus 400 ~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~-~v~d~dl~~L 468 (623)
||+|++||++|+ ++||+|||+++|+++|+++|++++++++.+++++||+++++++ .++++||..|
T Consensus 299 ~~~P~~vG~~~~----~~i~~~SG~~~i~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~ 364 (365)
T TIGR02660 299 PFDPELVGRSRR----IVIGKHSGRAALINALAQLGIPLSEEEAAALLPAVRAFATRLKRPLSDAELIAL 364 (365)
T ss_pred CcCHHHcCCeeE----EEeEchhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHh
Confidence 999999998874 9999999999999999999999999999999999999998876 6999999876
No 14
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=3.1e-89 Score=733.48 Aligned_cols=362 Identities=52% Similarity=0.802 Sum_probs=347.3
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecc
Q 006969 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (623)
Q Consensus 80 v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r 159 (623)
|+|+|||||||+|++++.|++++|++|++.|+++||++||+|||..+++|+++++.+.+.. +...+++|+|
T Consensus 1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~---------~~~~v~~~~r 71 (363)
T TIGR02090 1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEG---------LNAEICSLAR 71 (363)
T ss_pred CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcC---------CCcEEEEEcc
Confidence 5799999999999999999999999999999999999999999999999999999998752 2368999999
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHH
Q 006969 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (623)
Q Consensus 160 ~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~ 239 (623)
++++||++++++ |++.|++|+++||+|+++++++|++|+++++.+++++||++|++ |+|++||++|++++|+.++
T Consensus 72 ~~~~di~~a~~~----g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~eda~r~~~~~l~~~ 146 (363)
T TIGR02090 72 ALKKDIDKAIDC----GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLI-VEFSAEDATRTDIDFLIKV 146 (363)
T ss_pred cCHHHHHHHHHc----CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeecCCCCHHHHHHH
Confidence 999999998876 89999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred HHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccC
Q 006969 240 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (623)
Q Consensus 240 ~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGE 319 (623)
++++.++|+++|+||||+|.++|++++++|+.++++++ ++|++|||||+|||+||+++|+++||++||+|++||||
T Consensus 147 ~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~----~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe 222 (363)
T TIGR02090 147 FKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK----LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE 222 (363)
T ss_pred HHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC----ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc
Confidence 99999999999999999999999999999999999875 67999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCCccc
Q 006969 320 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYE 399 (623)
Q Consensus 320 RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye 399 (623)
|+||++||+++++|+.. +|+++++|+++|.++++++++++|+++++++||||+|+|+||||||+||++|||.+||
T Consensus 223 raGN~~lE~vv~~L~~~-----~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGiH~~~i~k~~~~Ye 297 (363)
T TIGR02090 223 RAGNAALEEVVMALKYL-----YGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGIHVDGVIENPLTYE 297 (363)
T ss_pred ccccccHHHHHHHHHHh-----hCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcchhHHHHcCCcccCC
Confidence 99999999999999863 4788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHH
Q 006969 400 IISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIAL 468 (623)
Q Consensus 400 ~~~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~~v~d~dl~~L 468 (623)
||+|+.||++|+ ++||+|||+++|+++|+++|++++++++..++++||+++++++.++++||..+
T Consensus 298 ~~~P~~vG~~~~----~~~g~~SG~~~i~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~~ 362 (363)
T TIGR02090 298 PISPEVVGNKRR----IILGKHSGRHAVEAKLKELGIKVTDEQLKEILKRIKEIGDKGKRVTDADVKEI 362 (363)
T ss_pred CCCHHHcCCcce----eechhhccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 999999999874 99999999999999999999999999999999999999998888999999876
No 15
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-72 Score=590.15 Aligned_cols=298 Identities=25% Similarity=0.349 Sum_probs=274.8
Q ss_pred ccCCCCCCCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccc
Q 006969 64 ATRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNA 143 (623)
Q Consensus 64 ~~~~~~~~~~~~~~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~ 143 (623)
|+-|.|+|.+.|. |+|||||||+|++|+.||.++|++||++|+++|||+||+|||++|++|++++++|++...
T Consensus 22 ~~w~~~~~~~~p~-----~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~-- 94 (333)
T PRK14847 22 RAWPARRPAAAPI-----WMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERR-- 94 (333)
T ss_pred CCCcccccCCCCc-----eecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCC--
Confidence 4557777776544 999999999999999999999999999999999999999999999999999999987521
Q ss_pred cccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----
Q 006969 144 VDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC----- 218 (623)
Q Consensus 144 ~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~----- 218 (623)
++ ..+.|++|+|++++||+++++++++++.++||+|+|+||+|++.+|+++++++++++.++|+|||++|.
T Consensus 95 ~~----~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~ 170 (333)
T PRK14847 95 IP----DDVTIEALTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGT 170 (333)
T ss_pred CC----CCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCC
Confidence 00 025899999999999999999999888999999999999999999999999999999999999999954
Q ss_pred C-eEEEcccCCCCCCHHHHHHHHHHHHHc-C-----CcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCC
Q 006969 219 D-DVEFSPEDAGRSDRKFLYEILGEVIKV-G-----ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQND 291 (623)
Q Consensus 219 ~-~V~f~~eda~r~d~e~l~~~~~~~~~a-G-----a~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND 291 (623)
. .|+|++||++|+|++||.++++++.+. | +++|+||||+|+++|++++++|+.++++++..++++|++|||||
T Consensus 171 ~~~V~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD 250 (333)
T PRK14847 171 QWIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHND 250 (333)
T ss_pred ceEEEEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Confidence 1 499999999999999999999988666 5 77899999999999999999999999998765568999999999
Q ss_pred cchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCC
Q 006969 292 LGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPH 371 (623)
Q Consensus 292 ~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~ 371 (623)
+|||+||+++|+++||++||+|++|+|||+||++||+|+++|+. +|+.+++|++.|.+++++|++++|+++++|
T Consensus 251 ~GlA~ANslaA~~aGa~~i~~tv~G~GERaGNa~lE~v~~~L~~------~g~~~~id~~~l~~~~~~v~~~sg~~v~~~ 324 (333)
T PRK14847 251 RGTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLER------QGIASGLDFRDMAALRACVSECNQLPIDVF 324 (333)
T ss_pred CchHHHHHHHHHHhCCCEEEeeCCcCCccccchhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999986 378899999999999999999999999999
Q ss_pred CcccCcc
Q 006969 372 KAIVGAN 378 (623)
Q Consensus 372 ~pivG~~ 378 (623)
|||||-.
T Consensus 325 kPivg~~ 331 (333)
T PRK14847 325 HPYAWLD 331 (333)
T ss_pred CCeecCC
Confidence 9999963
No 16
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=7.8e-62 Score=503.98 Aligned_cols=274 Identities=31% Similarity=0.472 Sum_probs=252.9
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHH-hHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCc--cceEEeecc
Q 006969 83 FDTTLRDGEQSPGATLTSKEKLDIARQL-AKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY--VPVICGLSR 159 (623)
Q Consensus 83 ~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L-~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l--~~~i~~~~r 159 (623)
+|||||||+|+++..||+++|++|++.| +++||+.||+|||..+|+|++.++++++..... ++ ...+.+|.+
T Consensus 1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~-----~~~~~~~~~a~~~ 75 (280)
T cd07945 1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEE-----GLLDRIEVLGFVD 75 (280)
T ss_pred CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhh-----ccccCcEEEEecC
Confidence 5999999999999999999999999997 888999999999999999999999998752110 11 146777876
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC---CCCHHHH
Q 006969 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG---RSDRKFL 236 (623)
Q Consensus 160 ~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~---r~d~e~l 236 (623)
. .+++++|+++ |.+.|++++|+||.|+++++|+|++|+++++.+++++|+++|++ |+|++||++ |++++|+
T Consensus 76 ~-~~~~~~A~~~----g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~-v~~~~~d~~~~~r~~~~~~ 149 (280)
T cd07945 76 G-DKSVDWIKSA----GAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIE-VNIYLEDWSNGMRDSPDYV 149 (280)
T ss_pred c-HHHHHHHHHC----CCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCE-EEEEEEeCCCCCcCCHHHH
Confidence 4 6788887765 89999999999999999999999999999999999999999985 999999866 8999999
Q ss_pred HHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCC
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~G 316 (623)
.++++++.++|+++|+||||+|+++|++++++++.+++++|+ ++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 150 ~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~---~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~G 226 (280)
T cd07945 150 FQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPN---LHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNG 226 (280)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCC---CeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 999999999999999999999999999999999999999874 68999999999999999999999999999999999
Q ss_pred ccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCccc
Q 006969 317 IGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIV 375 (623)
Q Consensus 317 lGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~piv 375 (623)
||||+||++||+++++|+.+ +|+.+++|+++|.++++++++++|+++++|+|||
T Consensus 227 lGe~aGN~~~E~~v~~L~~~-----~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv 280 (280)
T cd07945 227 LGERAGNAPLASVIAVLKDK-----LKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280 (280)
T ss_pred ccccccCccHHHHHHHHHHh-----cCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence 99999999999999999753 4889999999999999999999999999999996
No 17
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=1.2e-61 Score=501.99 Aligned_cols=269 Identities=32% Similarity=0.444 Sum_probs=247.0
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccc
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (623)
++|+|||||+|++|.+||+++|++|++.|+++||++||+|||.++++|++.++.|.+.... .. ..++++|+|+.
T Consensus 4 ~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~~~~--~~----~~~~~al~r~~ 77 (284)
T cd07942 4 WCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEEDLI--PD----DVTIQVLTQAR 77 (284)
T ss_pred ccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHccCC--CC----CCEEEEEcCCC
Confidence 5799999999999999999999999999999999999999999999999999999764210 00 25789999999
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC------eEEEcccCCCCCCHHH
Q 006969 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD------DVEFSPEDAGRSDRKF 235 (623)
Q Consensus 162 ~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~------~V~f~~eda~r~d~e~ 235 (623)
+.||+++++++.+++.++|++|+|+||.|+++|+|+|++|+++++.++|+|+|++|.+ .|.|++||++|++++|
T Consensus 78 ~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~ 157 (284)
T cd07942 78 EDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDF 157 (284)
T ss_pred hhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHH
Confidence 9999999998766666689999999999999999999999999999999999999853 4789999999999999
Q ss_pred HHHHHHHHHHc---C---CcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 006969 236 LYEILGEVIKV---G---ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (623)
Q Consensus 236 l~~~~~~~~~a---G---a~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 309 (623)
+.++++++.++ | +++|+||||+|+++|.+++++|+.+++.+|..++++|++|||||+|||+||+++|+++||++
T Consensus 158 l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~ 237 (284)
T cd07942 158 ALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADR 237 (284)
T ss_pred HHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCE
Confidence 99999999887 5 44999999999999999999999999998865567899999999999999999999999999
Q ss_pred EEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 310 VEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 310 Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
||+|++|+|||+||++||+|+++|+. +|+.+++|+++|.++++++++
T Consensus 238 id~~~~g~GeRaGN~~~E~lv~~l~~------~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 238 VEGTLFGNGERTGNVDLVTLALNLYS------QGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred EEeeCccCCccccchhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999975 378899999999999999874
No 18
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=8.3e-60 Score=484.53 Aligned_cols=262 Identities=30% Similarity=0.410 Sum_probs=246.2
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecc
Q 006969 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (623)
Q Consensus 80 v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r 159 (623)
++|+|||||||+|.+++.||+++|++|++.|+++||+.||+|+|.++|++++.++.+++.. +.+.+.+|.|
T Consensus 1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~---------~~~~v~~~~r 71 (262)
T cd07948 1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLG---------LKAKILTHIR 71 (262)
T ss_pred CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCC---------CCCcEEEEec
Confidence 3699999999999999999999999999999999999999999999999999999997641 2256788999
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHH
Q 006969 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (623)
Q Consensus 160 ~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~ 239 (623)
++.+|+++++++ |++.|++++++||.|++.+++++++|+++.+.++++++|++|+. |+|++||++|++++++.++
T Consensus 72 ~~~~di~~a~~~----g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~-v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 72 CHMDDARIAVET----GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIE-VRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred CCHHHHHHHHHc----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeeCCCCHHHHHHH
Confidence 999999999886 89999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred HHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccC
Q 006969 240 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (623)
Q Consensus 240 ~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGE 319 (623)
++++.++|+++|+|+||+|+++|++++++++.+++.++ ++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 147 ~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~----~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe 222 (262)
T cd07948 147 YRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS----CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE 222 (262)
T ss_pred HHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc
Confidence 99999999999999999999999999999999999885 57999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 320 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 320 RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
|+||++||+|+++|+..+. .|+.+++|+++|+++|++|++
T Consensus 223 raGn~~~e~~~~~l~~~~~---~~~~~~~~l~~l~~~~~~v~~ 262 (262)
T cd07948 223 RNGITPLGGLIARMYTADP---EYVVSKYKLELLPELERLVAD 262 (262)
T ss_pred ccCCccHHHHHHHHHhccc---cCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999986532 266789999999999999874
No 19
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=3.6e-59 Score=493.84 Aligned_cols=270 Identities=18% Similarity=0.281 Sum_probs=245.7
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-------hHHHHHHHHHHHhccccccCCC
Q 006969 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK-------EDFEAVRTIAKEVGNAVDAESG 149 (623)
Q Consensus 77 ~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-------~d~e~v~~i~~~~~~~~~~~~~ 149 (623)
|++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||. +| ++.|.++.+.+. . +
T Consensus 44 ~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~-~-------~ 114 (347)
T PLN02746 44 PKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNL-E-------G 114 (347)
T ss_pred CCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhc-c-------C
Confidence 567999999999999999999999999999999999999999999875 44 334566666542 1 1
Q ss_pred ccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE------EE
Q 006969 150 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EF 223 (623)
Q Consensus 150 l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V------~f 223 (623)
..+.+|++ +.+|+++|+++ |.+.|++|+++||.|+++|+++|++|+++++.++|++||++|+. | .|
T Consensus 115 --~~~~~l~~-n~~die~A~~~----g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~-v~~~is~~f 186 (347)
T PLN02746 115 --ARFPVLTP-NLKGFEAAIAA----GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIP-VRGYVSCVV 186 (347)
T ss_pred --CceeEEcC-CHHHHHHHHHc----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeee
Confidence 23456654 89999999986 89999999999999999999999999999999999999999986 5 47
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 006969 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (623)
Q Consensus 224 ~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 303 (623)
+++|.+|+|++|+.++++++.++|+++|+||||+|+++|.+++++|+.+++.+|. .+|++|||||+|||+||+++|+
T Consensus 187 g~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~---~~i~~H~Hnd~GlA~AN~lAA~ 263 (347)
T PLN02746 187 GCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPV---DKLAVHFHDTYGQALANILVSL 263 (347)
T ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCC---CeEEEEECCCCChHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999873 5799999999999999999999
Q ss_pred HhCCCEEEeccCCccC------ccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCC
Q 006969 304 CAGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHK 372 (623)
Q Consensus 304 ~aGA~~Vd~Tv~GlGE------RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~ 372 (623)
++||++||+|++|||| |+||++||+|++.|+. +|+.+++|+++|.++++++++++|++++.+.
T Consensus 264 ~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~------~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~ 332 (347)
T PLN02746 264 QMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNG------LGVSTNVDLGKLMAAGDFISKHLGRPSGSKT 332 (347)
T ss_pred HhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999 9999999999999986 3789999999999999999999999988764
No 20
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=1.2e-58 Score=476.13 Aligned_cols=258 Identities=43% Similarity=0.577 Sum_probs=244.3
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccc
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (623)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|||..++.+++.++.+.+... ...+.+|+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~---------~~~~~~~~r~~ 71 (259)
T cd07939 1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGL---------PARLIVWCRAV 71 (259)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCC---------CCEEEEeccCC
Confidence 689999999999999999999999999999999999999999999999999999887421 25788999999
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHH
Q 006969 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (623)
Q Consensus 162 ~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~ 241 (623)
.+|++++.++ |++.|++++++||.|+++++|+|+++.++++.++++++|++|+. |.|+++|++|++++|+.++++
T Consensus 72 ~~~v~~a~~~----g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~ 146 (259)
T cd07939 72 KEDIEAALRC----GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDASRADPDFLIEFAE 146 (259)
T ss_pred HHHHHHHHhC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCCCCCHHHHHHHHH
Confidence 9999988765 89999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCcc
Q 006969 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (623)
Q Consensus 242 ~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERa 321 (623)
++.++|+++|+||||+|.++|++++++|+.+++++| ++|++|||||+|||+||+++|+++||++||+|++|||||+
T Consensus 147 ~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~a 222 (259)
T cd07939 147 VAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD----LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERA 222 (259)
T ss_pred HHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccc
Confidence 999999999999999999999999999999999986 5799999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 322 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 322 GNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
||++||+++++|+.+ .|+.+++|+++|.++++++++
T Consensus 223 GN~~tE~lv~~l~~~-----~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 223 GNAALEEVVMALKHL-----YGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred cCcCHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHHh
Confidence 999999999999874 378899999999999999886
No 21
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=100.00 E-value=6e-58 Score=487.77 Aligned_cols=343 Identities=34% Similarity=0.511 Sum_probs=321.5
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccc
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (623)
|+|||||||+|.+++.|+.++|++|++.|+++||++||+|+|..++++++.++.++... +...+.+|+|+.
T Consensus 1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 71 (344)
T TIGR02146 1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAASKQSRIDIEIIASLG---------LKANIVTHIRCR 71 (344)
T ss_pred CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhcC---------CCcEEEEECCCC
Confidence 68999999999999999999999999999999999999999999999988888877641 235688999999
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHH
Q 006969 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (623)
Q Consensus 162 ~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~ 241 (623)
.++++.+.++ +++.++++.+.|++|+..+++++.++.++++..+++++++.|++ +.++++++++++++++.++++
T Consensus 72 ~~~~~~a~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~-~~~~~~~~~~~~~~~~~~~~d 146 (344)
T TIGR02146 72 LDDAKVAVEL----GVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLE-VRFSAEDTFRSELADLLSIYE 146 (344)
T ss_pred HHHHHHHHHC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEeeCCCCCHHHHHHHHH
Confidence 9999988875 78899999999999999999999999999999999999999985 899999999999999999999
Q ss_pred HHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCcc
Q 006969 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (623)
Q Consensus 242 ~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERa 321 (623)
.+.++|++.++++||+|.++|.++..+|..+++..+. +++++|+|||+|+|+||+++|+.+||+++|+|++|||+|+
T Consensus 147 ~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~---~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~~~ 223 (344)
T TIGR02146 147 TVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPG---VDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGERN 223 (344)
T ss_pred HHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCC---CeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeCCC
Confidence 9999999999999999999999999999999998763 7899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCCccccC
Q 006969 322 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEII 401 (623)
Q Consensus 322 GNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~ 401 (623)
||++++.++..|... .|+. .+|+..+.++++.+....++++++++|++|.++|.|++|+|+++++|+|.+|+++
T Consensus 224 G~~~l~~~~~~L~~~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~y~~~ 297 (344)
T TIGR02146 224 GITPLGGILARLYYH-----TPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRTYEFL 297 (344)
T ss_pred CCccHHHHHHHHHHh-----cCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCcccCCCC
Confidence 999999999888863 3443 3799999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006969 402 SPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFK 451 (623)
Q Consensus 402 ~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~iK 451 (623)
+|+.+|+.|. ++++++||+++++++|+++|++++++++.++++++|
T Consensus 298 ~~s~~g~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (344)
T TIGR02146 298 PPEVFGRKRH----ILIARLTGKHAIKARKEKLGVKLIEEELKRVTAKIK 343 (344)
T ss_pred CHHHcCCcce----EeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 9999998874 899999999999999999999999999999999887
No 22
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=2.4e-58 Score=476.10 Aligned_cols=268 Identities=61% Similarity=0.892 Sum_probs=250.4
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccc
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (623)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|||..+|+|++.++.+.+..++ ..+.+|+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~---------~~~~~l~r~~ 71 (268)
T cd07940 1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLN---------AEICGLARAV 71 (268)
T ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCC---------CEEEEEccCC
Confidence 6899999999999999999999999999999999999999999899999999999875432 4788999999
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHH
Q 006969 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (623)
Q Consensus 162 ~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~ 241 (623)
.+|+++++++.+..++++|++|.++||.|+++++++|++++++.+.+++++++++|++ |+|+++|+++++++|+.++++
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~ 150 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLD-VEFSAEDATRTDLDFLIEVVE 150 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEeeecCCCCCHHHHHHHHH
Confidence 9999999998555559999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCcc
Q 006969 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (623)
Q Consensus 242 ~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERa 321 (623)
++.++|+++|+||||+|.++|++++++|+.+++++|+. +++|++|+|||+|||+||+++|+++||++||+|++|||||+
T Consensus 151 ~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~-~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~a 229 (268)
T cd07940 151 AAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNI-KVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERA 229 (268)
T ss_pred HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCC-ceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccccc
Confidence 99999999999999999999999999999999999742 37899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 322 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 322 GNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
||++||+|+..|+.+++. +|+.+++|+++|.++++++++
T Consensus 230 GN~~tE~lv~~L~~~~~~--~~~~t~idl~~l~~~~~~~~~ 268 (268)
T cd07940 230 GNAALEEVVMALKTRYDY--YGVETGIDTEELYETSRLVSR 268 (268)
T ss_pred ccccHHHHHHHHHhcccc--cCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999986532 368999999999999999863
No 23
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=1.9e-57 Score=472.69 Aligned_cols=267 Identities=19% Similarity=0.346 Sum_probs=243.2
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEe-------cCCCChhHHHHHHHHHHHhccccccCCC
Q 006969 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAG-------FPAASKEDFEAVRTIAKEVGNAVDAESG 149 (623)
Q Consensus 77 ~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvG-------fP~~s~~d~e~v~~i~~~~~~~~~~~~~ 149 (623)
|++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+| +|..+ ++++.++.|.+. .+
T Consensus 2 ~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~-d~~e~~~~l~~~-~~------- 72 (287)
T PRK05692 2 PKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA-DAAEVMAGIQRR-PG------- 72 (287)
T ss_pred CCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc-cHHHHHHhhhcc-CC-------
Confidence 356999999999999999999999999999999999999999999 45433 246777777642 11
Q ss_pred ccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE------EE
Q 006969 150 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EF 223 (623)
Q Consensus 150 l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V------~f 223 (623)
..+.+|.+ +.+|+++|+++ |.+.|++|+++||.|+++|+++|++|+++++.++|++||++|+. | .|
T Consensus 73 --~~~~~l~~-~~~~ie~A~~~----g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~-v~~~i~~~~ 144 (287)
T PRK05692 73 --VTYAALTP-NLKGLEAALAA----GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVR-VRGYVSCVL 144 (287)
T ss_pred --CeEEEEec-CHHHHHHHHHc----CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEEEEe
Confidence 35666764 89999999886 99999999999999999999999999999999999999999985 5 36
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 006969 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (623)
Q Consensus 224 ~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 303 (623)
++++.++++++++.++++++.++|+++|+||||+|+++|.+++++|+.+++++|+ ++|++|||||+|||+||+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~i~~H~Hn~~Gla~AN~laA~ 221 (287)
T PRK05692 145 GCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPA---ERLAGHFHDTYGQALANIYASL 221 (287)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCC---CeEEEEecCCCCcHHHHHHHHH
Confidence 7778889999999999999999999999999999999999999999999999974 6899999999999999999999
Q ss_pred HhCCCEEEeccCCccC------ccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCC
Q 006969 304 CAGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQ 369 (623)
Q Consensus 304 ~aGA~~Vd~Tv~GlGE------RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~ 369 (623)
++||++||+|++|||| |+||++||+++++|+. .|+++++|+++|.++++++++++|+++|
T Consensus 222 ~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~------~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 222 EEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHG------LGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred HhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999 9999999999999986 3788999999999999999999999875
No 24
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=2.6e-57 Score=469.52 Aligned_cols=264 Identities=32% Similarity=0.498 Sum_probs=240.5
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccc
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (623)
|+|||||||+|++++.|++++|++|++.|+++||++||+|||.++|+++++++.+.+.... ...+.+|+|++
T Consensus 1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 72 (273)
T cd07941 1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLK--------HAKLAAFGSTR 72 (273)
T ss_pred CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCC--------CcEEEEEeccc
Confidence 6899999999999999999999999999999999999999999999999999988874210 14688899887
Q ss_pred hhhHH----HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc---CCCCCCHH
Q 006969 162 ERDIK----TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRSDRK 234 (623)
Q Consensus 162 ~~dI~----~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e---da~r~d~e 234 (623)
+.|+. +.++....+|.+.|+++.++||.|+++++|+|++++++++.++++++|++|++ |.+++| |+++++++
T Consensus 73 ~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~~~~~d~~~~~~~ 151 (273)
T cd07941 73 RAGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGRE-VIFDAEHFFDGYKANPE 151 (273)
T ss_pred ccCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEeEEeccccCCCCHH
Confidence 77652 34555666799999999999999999999999999999999999999999985 888777 77899999
Q ss_pred HHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 006969 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (623)
Q Consensus 235 ~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv 314 (623)
|+.++++++.++|+++|+|+||+|.++|++++++++.+++++|+ ++|++|||||+|||+||+++|+++||++||+|+
T Consensus 152 ~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~ 228 (273)
T cd07941 152 YALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPG---VPLGIHAHNDSGLAVANSLAAVEAGATQVQGTI 228 (273)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCC---CeeEEEecCCCCcHHHHHHHHHHcCCCEEEEec
Confidence 99999999999999999999999999999999999999999974 789999999999999999999999999999999
Q ss_pred CCccCccCcccHHHHHHHHHhcccccccccc--cCCChhHHHHHHHHHHH
Q 006969 315 NGIGERAGNASLEEVVMAFKCRGEHILGGLY--TGINTRHIVMASKMVEE 362 (623)
Q Consensus 315 ~GlGERaGNa~lEevv~~L~~~~~~~~~G~~--t~idl~~L~~~s~~v~~ 362 (623)
+|||||+||++||+++.+|+.+. |+. +++|++.|+++|++|++
T Consensus 229 ~GlGeraGn~~~e~~~~~L~~~~-----~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 229 NGYGERCGNANLCSIIPNLQLKM-----GYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred cccccccccccHHHHHHHHHhcc-----CCCCcCccCHHHHHHHHHHHhC
Confidence 99999999999999999998642 433 58999999999999874
No 25
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=4.7e-56 Score=459.85 Aligned_cols=260 Identities=28% Similarity=0.387 Sum_probs=236.9
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcC-----CCEEEEecCCCChhHHHHHHHHHHHhccccccCCCc-cce
Q 006969 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLG-----VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPV 153 (623)
Q Consensus 80 v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~G-----vd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~ 153 (623)
|+|+|||||||+|+++.. ++++|++|++.|+++| |+.||+ |+.++.|++.++.+.+. ++ .+.
T Consensus 1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~--~s~~~~d~~~v~~~~~~---------~~~~~~ 68 (279)
T cd07947 1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEF--FLYTEKDREAVEACLDR---------GYKFPE 68 (279)
T ss_pred CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEe--cCcChHHHHHHHHHHHc---------CCCCCE
Confidence 579999999999999985 9999999999999999 999999 44677999999988863 12 267
Q ss_pred EEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCH
Q 006969 154 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 233 (623)
Q Consensus 154 i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~ 233 (623)
+++|.|++.+|+++|+++ |++.|++|+|+||.|+++|+|+|++|+++++.++|++||++|+. |.|++||++|+|+
T Consensus 69 v~~~~r~~~~die~A~~~----g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~-v~~~~ed~~r~d~ 143 (279)
T cd07947 69 VTGWIRANKEDLKLVKEM----GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIK-PRCHLEDITRADI 143 (279)
T ss_pred EEEEecCCHHHHHHHHHc----CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCe-EEEEEEcccCCCc
Confidence 889999999999999886 89999999999999999999999999999999999999999985 9999999999988
Q ss_pred H-----HHHHHHHHHHHcCCc-EEeecCcccccCH-------HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 006969 234 K-----FLYEILGEVIKVGAT-TLNIPDTVGITMP-------TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (623)
Q Consensus 234 e-----~l~~~~~~~~~aGa~-~I~l~DTvG~~~P-------~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsl 300 (623)
+ |+.++++.+.++|++ +|+||||+|+++| .+++++++.+++.++ .++++|++|||||+|||+||++
T Consensus 144 ~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~-~p~~~l~~H~Hn~~Gla~AN~l 222 (279)
T cd07947 144 YGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCG-VPSENLEWHGHNDFYKAVANAV 222 (279)
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcC-CCCceEEEEecCCCChHHHHHH
Confidence 4 888888888889999 8999999999988 689999999999853 2246799999999999999999
Q ss_pred HHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 301 AGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 301 aAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
+|+++||++||+|++|||||+||++||+++++|+.. +|+.+++|+++|.++++++++
T Consensus 223 aA~~aG~~~vd~sv~GlGe~aGN~~tE~lv~~l~~~-----~g~~t~idl~~l~~~~~~~~~ 279 (279)
T cd07947 223 AAWLYGASWVNCTLLGIGERTGNCPLEAMVIEYAQL-----KGNFDGMNLEVITEIAEYFEK 279 (279)
T ss_pred HHHHhCCCEEEEecccccccccchhHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999863 378899999999999999863
No 26
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=1.2e-55 Score=456.86 Aligned_cols=255 Identities=20% Similarity=0.372 Sum_probs=229.8
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEec-------CCCChhHHHHHHHHHHHhccccccCCCccceE
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF-------PAASKEDFEAVRTIAKEVGNAVDAESGYVPVI 154 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf-------P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i 154 (623)
|+|||||||+|+++.+|++++|++|++.|+++||++||+|+ |.....+ +.++.+.. . . ..++
T Consensus 1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~-~~~~~l~~-~----~-----~~~~ 69 (274)
T cd07938 1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAE-EVLAGLPR-R----P-----GVRY 69 (274)
T ss_pred CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHH-HHHhhccc-C----C-----CCEE
Confidence 68999999999999999999999999999999999999994 3333222 33333332 1 1 1478
Q ss_pred EeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE------EEcccCC
Q 006969 155 CGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EFSPEDA 228 (623)
Q Consensus 155 ~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V------~f~~eda 228 (623)
++|+ ++.+|+++|+++ |.+.|++|.++||.|+++|+++|+++.++++.+.++++|++|+. | .|+++|.
T Consensus 70 ~~~~-~~~~dv~~A~~~----g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~ 143 (274)
T cd07938 70 SALV-PNLRGAERALAA----GVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLR-VRGYVSTAFGCPYE 143 (274)
T ss_pred EEEC-CCHHHHHHHHHc----CcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeEecCCCC
Confidence 8886 689999999886 89999999999999999999999999999999999999999986 5 4778899
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCC
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 308 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~ 308 (623)
++++++|+.++++.+.++|+++|+||||+|.++|.+++++|+.+++++|+ ++|++|||||+|||+||+++|+++||+
T Consensus 144 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~i~~H~Hnd~GlA~AN~laA~~aGa~ 220 (274)
T cd07938 144 GEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD---EKLALHFHDTRGQALANILAALEAGVR 220 (274)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC---CeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999974 789999999999999999999999999
Q ss_pred EEEeccCCcc------CccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 309 QVEVTINGIG------ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 309 ~Vd~Tv~GlG------ERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
+||+|++||| ||+||++||+++++|+. .|+++++|+++|.++++++++
T Consensus 221 ~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~------~g~~t~idl~~l~~~~~~~~~ 274 (274)
T cd07938 221 RFDSSVGGLGGCPFAPGATGNVATEDLVYMLEG------MGIETGIDLDKLLAAARWISE 274 (274)
T ss_pred EEEEeccccCCCCCCCCccCCcCHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999 79999999999999986 378899999999999999863
No 27
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=6.4e-53 Score=432.67 Aligned_cols=257 Identities=38% Similarity=0.568 Sum_probs=240.6
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCC------hhHHHHHHHHHHHhccccccCCCccceEEe
Q 006969 83 FDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAAS------KEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (623)
Q Consensus 83 ~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 156 (623)
+|||||||+|++++.|++++|++|++.|+++||++||+|+|... +.+++.++.+.+..++ ..+.+
T Consensus 1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~---------~~~~~ 71 (265)
T cd03174 1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPN---------VKLQA 71 (265)
T ss_pred CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCC---------cEEEE
Confidence 59999999999999999999999999999999999999999877 6788999998875321 46778
Q ss_pred ecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCC--CCHH
Q 006969 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR--SDRK 234 (623)
Q Consensus 157 ~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r--~d~e 234 (623)
|+|+..++++++.++ |.++|+++.+.||.|.+.++++++++.++.+.+.++++++.|++ |.++.+++++ ++++
T Consensus 72 l~~~~~~~i~~a~~~----g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~ 146 (265)
T cd03174 72 LVRNREKGIERALEA----GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLE-VEGSLEDAFGCKTDPE 146 (265)
T ss_pred EccCchhhHHHHHhC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeecCCCCCHH
Confidence 999888889888775 89999999999999999999999999999999999999999986 9999999999 9999
Q ss_pred HHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 006969 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (623)
Q Consensus 235 ~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv 314 (623)
++.++++.+.++|+++|+|+||+|.++|+++.++++.+++.+++ ++|++|+|||+|||+||+++|+++||++||+|+
T Consensus 147 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~---~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~ 223 (265)
T cd03174 147 YVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD---VPLGLHTHNTLGLAVANSLAALEAGADRVDGSV 223 (265)
T ss_pred HHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC---CeEEEEeCCCCChHHHHHHHHHHcCCCEEEecc
Confidence 99999999999999999999999999999999999999999974 789999999999999999999999999999999
Q ss_pred CCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 315 NGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 315 ~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
+|||||+||++||+++.+|+.+ |+.+++|++.|.++++++++
T Consensus 224 ~G~G~~~Gn~~~e~~~~~l~~~------~~~~~~~~~~l~~~~~~~~~ 265 (265)
T cd03174 224 NGLGERAGNAATEDLVAALEGL------GIDTGIDLEKLLEISRYVEE 265 (265)
T ss_pred ccccccccCccHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999974 57899999999999998863
No 28
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=2e-52 Score=431.14 Aligned_cols=247 Identities=20% Similarity=0.284 Sum_probs=220.4
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhH---------HHHHHHHHHHhccccccCCCccc
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKED---------FEAVRTIAKEVGNAVDAESGYVP 152 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d---------~e~v~~i~~~~~~~~~~~~~l~~ 152 (623)
|+|||||||+|.+|+.|+.++|++|++.|+++||++||+|||..++.+ .+.++++.+.... ..
T Consensus 1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~ 72 (266)
T cd07944 1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKG--------NT 72 (266)
T ss_pred CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhcc--------CC
Confidence 689999999999999999999999999999999999999999877643 6788888775321 15
Q ss_pred eEEeecccch---hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC
Q 006969 153 VICGLSRCNE---RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG 229 (623)
Q Consensus 153 ~i~~~~r~~~---~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~ 229 (623)
.+++|+|+.. +|++.+.+ +|++.|+++.+.+ .++.+.++++++|++|++ |.|+++|++
T Consensus 73 ~~~~~~~~~~~~~~~l~~a~~----~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~-v~~~~~~a~ 133 (266)
T cd07944 73 KIAVMVDYGNDDIDLLEPASG----SVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYE-VFFNLMAIS 133 (266)
T ss_pred EEEEEECCCCCCHHHHHHHhc----CCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCe-EEEEEEeec
Confidence 7888888774 56666544 4899999988665 367888999999999985 999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 006969 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 309 (623)
+++++++.++++.+.++|+++|+|+||+|+++|++++++++.++++++. +++|++|||||+|||+||+++|+++||++
T Consensus 134 ~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~~i~~H~Hn~~Gla~AN~laA~~aGa~~ 211 (266)
T cd07944 134 GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDK--DIKLGFHAHNNLQLALANTLEAIELGVEI 211 (266)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCC--CceEEEEeCCCccHHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999999999999999999999863 37899999999999999999999999999
Q ss_pred EEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHH-HHHHHHh
Q 006969 310 VEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS-KMVEEYT 364 (623)
Q Consensus 310 Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s-~~v~~~~ 364 (623)
||+|++|||||+||++||+++++|+.+ +.+++|+++|.+++ +++..+.
T Consensus 212 vd~s~~G~G~~aGN~~~E~~v~~l~~~-------~~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 212 IDATVYGMGRGAGNLPTELLLDYLNNK-------FGKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred EEEecccCCCCcCcHHHHHHHHHHHHh-------hccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999863 35789999999999 7777654
No 29
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=1.3e-52 Score=425.13 Aligned_cols=236 Identities=42% Similarity=0.664 Sum_probs=219.4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHH
Q 006969 88 RDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (623)
Q Consensus 88 RDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (623)
|||+|++++.|+.++|++|++.|+++||++||+|+|..++++++.++.+.+...+ ..+.+|+|+..++++.
T Consensus 1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~i~~ 71 (237)
T PF00682_consen 1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN---------ARLQALCRANEEDIER 71 (237)
T ss_dssp THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS---------SEEEEEEESCHHHHHH
T ss_pred CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc---------cccceeeeehHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887543 4788999999999999
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG 247 (623)
+++.++.+|.++|+++.+.||.|++.++++++++.++++.++++++|++|++ |.|+++|+++++++++.++++.+.++|
T Consensus 72 ~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~g 150 (237)
T PF00682_consen 72 AVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYE-VAFGCEDASRTDPEELLELAEALAEAG 150 (237)
T ss_dssp HHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSE-EEEEETTTGGSSHHHHHHHHHHHHHHT
T ss_pred HHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCc-eEeCccccccccHHHHHHHHHHHHHcC
Confidence 9998889999999999999999999999999999999999999999999985 999999999999999999999999999
Q ss_pred CcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHH
Q 006969 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (623)
Q Consensus 248 a~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lE 327 (623)
+++|+||||+|+++|++++++|+.+++++|+ ++|++|+|||+|||+||+++|+++||++||+|++|||||+||++||
T Consensus 151 ~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~---~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le 227 (237)
T PF00682_consen 151 ADIIYLADTVGIMTPEDVAELVRALREALPD---IPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLE 227 (237)
T ss_dssp -SEEEEEETTS-S-HHHHHHHHHHHHHHSTT---SEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHH
T ss_pred CeEEEeeCccCCcCHHHHHHHHHHHHHhccC---CeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHH
Confidence 9999999999999999999999999999985 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 006969 328 EVVMAFKCR 336 (623)
Q Consensus 328 evv~~L~~~ 336 (623)
+++++|+..
T Consensus 228 ~lv~~L~~~ 236 (237)
T PF00682_consen 228 ELVAALERM 236 (237)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 999999864
No 30
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=2e-52 Score=433.39 Aligned_cols=246 Identities=24% Similarity=0.281 Sum_probs=224.0
Q ss_pred EEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEecCC--------CChhHHHHHHHHHHHhccccccCCCccc
Q 006969 82 VFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAESGYVP 152 (623)
Q Consensus 82 I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~--------~s~~d~e~v~~i~~~~~~~~~~~~~l~~ 152 (623)
|+|||||||+|++ |..|+.++|++|++.|+++||+.||+|+|+ .++.+++.++.+.+..++ .
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~---------~ 71 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPN---------T 71 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCC---------C
Confidence 5899999999998 899999999999999999999999999997 377889999999886543 3
Q ss_pred eEEeeccc-------------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 006969 153 VICGLSRC-------------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 219 (623)
Q Consensus 153 ~i~~~~r~-------------~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~ 219 (623)
.+++|+|+ .+.|++++.++ |++.|+++.+.|+ ++.+.++++++|++|++
T Consensus 72 ~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~----g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~ 133 (275)
T cd07937 72 PLQMLLRGQNLVGYRHYPDDVVELFVEKAAKN----GIDIFRIFDALND--------------VRNLEVAIKAVKKAGKH 133 (275)
T ss_pred ceehhcccccccCccCCCcHHHHHHHHHHHHc----CCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCe
Confidence 57888887 67777777665 8999999999997 57888999999999975
Q ss_pred eEEE--cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH
Q 006969 220 DVEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 297 (623)
Q Consensus 220 ~V~f--~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA 297 (623)
|.+ +.+++++++++|+.++++++.++|+++|+|+||+|.++|.++.++|+.++++++ ++|++|||||+|||+|
T Consensus 134 -v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hnd~GlA~a 208 (275)
T cd07937 134 -VEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG----LPIHLHTHDTSGLAVA 208 (275)
T ss_pred -EEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC----CeEEEEecCCCChHHH
Confidence 665 446789999999999999999999999999999999999999999999999986 5799999999999999
Q ss_pred HHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhC
Q 006969 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (623)
Q Consensus 298 NslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g 365 (623)
|+++|+++||++||+|++|||||+||++||+++++|+.+ |+.+++|+++|.+++++++++..
T Consensus 209 N~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~------g~~~~~dl~~l~~~~~~v~~~~~ 270 (275)
T cd07937 209 TYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGT------GRDTGLDLEKLEEISEYFEEVRK 270 (275)
T ss_pred HHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHcc------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999863 78899999999999999998753
No 31
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=1e-51 Score=425.57 Aligned_cols=246 Identities=25% Similarity=0.316 Sum_probs=220.4
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCC-----------ChhHHHHHHHHHHHhccccccCC
Q 006969 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAA-----------SKEDFEAVRTIAKEVGNAVDAES 148 (623)
Q Consensus 80 v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~-----------s~~d~e~v~~i~~~~~~~~~~~~ 148 (623)
|+|+|||||||+|++++.|++++|++|++.|+++||++||+|||.. ...+++.++.+.+..++
T Consensus 1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~------ 74 (263)
T cd07943 1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQ------ 74 (263)
T ss_pred CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccC------
Confidence 5799999999999999999999999999999999999999996421 12367888888765432
Q ss_pred CccceEEeec---ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 006969 149 GYVPVICGLS---RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 225 (623)
Q Consensus 149 ~l~~~i~~~~---r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ 225 (623)
..+.+|. +++.+|+++++++ |++.|+++.+.|+.| .+.++++++|++|++ |.+++
T Consensus 75 ---~~~~~~~~~~~~~~~~i~~a~~~----g~~~iri~~~~s~~~--------------~~~~~i~~ak~~G~~-v~~~~ 132 (263)
T cd07943 75 ---AKLGVLLLPGIGTVDDLKMAADL----GVDVVRVATHCTEAD--------------VSEQHIGAARKLGMD-VVGFL 132 (263)
T ss_pred ---CEEEEEecCCccCHHHHHHHHHc----CCCEEEEEechhhHH--------------HHHHHHHHHHHCCCe-EEEEE
Confidence 2455554 7888999988775 899999999999864 457899999999985 99999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 006969 226 EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (623)
Q Consensus 226 eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 305 (623)
+++++++++++.++++++.++|+++|+|+||+|.++|++++++++.++++++. ++|++|||||+|||+||+++|+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~l~~H~Hn~~GlA~AN~laAi~a 209 (263)
T cd07943 133 MMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDP---TPVGFHGHNNLGLAVANSLAAVEA 209 (263)
T ss_pred EeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC---ceEEEEecCCcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999873 589999999999999999999999
Q ss_pred CCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 306 GARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 306 GA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
||++||+|++|||||+||++||+++.+|+. .|+.+++|+++|.++++++.+
T Consensus 210 Ga~~vd~s~~GlG~~aGN~~~E~lv~~L~~------~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 210 GATRIDGSLAGLGAGAGNTPLEVLVAVLER------MGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred CCCEEEeecccccCCcCCccHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999986 377899999999999998764
No 32
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=3.4e-50 Score=452.21 Aligned_cols=311 Identities=21% Similarity=0.275 Sum_probs=266.8
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEe--------cCCCChhHHHHHHHHHHHhccccccCC
Q 006969 78 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG--------FPAASKEDFEAVRTIAKEVGNAVDAES 148 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~Gvd~IEvG--------fP~~s~~d~e~v~~i~~~~~~~~~~~~ 148 (623)
++|.|+|||||||+|++ +..|+++||+.|++.|+++||+.||++ +|..++.+|+.+|.+++.+++......
T Consensus 3 k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml 82 (593)
T PRK14040 3 KPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQML 82 (593)
T ss_pred CccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEE
Confidence 46999999999999999 789999999999999999999999994 455788899999999998765422110
Q ss_pred CccceEEeecc----cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEE
Q 006969 149 GYVPVICGLSR----CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEF 223 (623)
Q Consensus 149 ~l~~~i~~~~r----~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~-V~f 223 (623)
....++.+|+| +.+.+++.+.++ |+++|++|.+.+|+ +++..+++++|++|... +.+
T Consensus 83 ~Rg~n~vg~~~ypddvv~~~v~~a~~~----Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i 144 (593)
T PRK14040 83 LRGQNLLGYRHYADDVVERFVERAVKN----GMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTL 144 (593)
T ss_pred ecCcceeccccCcHHHHHHHHHHHHhc----CCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEE
Confidence 01124566776 445567766654 99999999999884 56778999999999851 122
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 006969 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (623)
Q Consensus 224 ~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 303 (623)
+..+....+++|+.++++.+.++||++|+||||+|.++|.+++++|+.+++.+. ++|++|||||+|||+||+++|+
T Consensus 145 ~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~GlA~An~laAi 220 (593)
T PRK14040 145 SYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD----VPLHLHCHATTGLSTATLLKAI 220 (593)
T ss_pred EEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCchHHHHHHHHH
Confidence 322334568999999999999999999999999999999999999999999883 6899999999999999999999
Q ss_pred HhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcc
Q 006969 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHE 383 (623)
Q Consensus 304 ~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~ 383 (623)
+|||++||+|++|||||+||++||+++++|+. .|+++++|+..|.+++++++++.
T Consensus 221 eAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~------~~~~~gidl~~l~~is~~~~~v~------------------- 275 (593)
T PRK14040 221 EAGIDGVDTAISSMSMTYGHSATETLVATLEG------TERDTGLDILKLEEIAAYFREVR------------------- 275 (593)
T ss_pred HcCCCEEEeccccccccccchhHHHHHHHHHh------cCCCcCCCHHHHHHHHHHHHHHH-------------------
Confidence 99999999999999999999999999999986 37789999999999999999987
Q ss_pred cccccccccccCCccccCCCcccCCcccccceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 006969 384 SGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKELGYELNDEQLGTIFWHFKAVA 454 (623)
Q Consensus 384 sGiH~dgi~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~--~~i~~~l~~lG~~l~~~~~~~~~~~iK~la 454 (623)
..|++++|+.+|..+ ++++...+|. +++...|+++|+. +.+.++++++++.-
T Consensus 276 ------------~~Y~~~~~~~~~~~~----~v~~~e~PGG~~Snl~~ql~~~g~~---~~~~evl~e~~~v~ 329 (593)
T PRK14040 276 ------------KKYAKFEGQLKGVDS----RILVAQVPGGMLTNMESQLKEQGAA---DKLDEVLAEIPRVR 329 (593)
T ss_pred ------------HHhccCCcccccCcc----cEEEEcCCCchHHHHHHHHHHCCCH---HHHHHHHHHHHHHH
Confidence 569999999999876 4999999999 9999999999987 77888888888764
No 33
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=2.3e-49 Score=445.19 Aligned_cols=297 Identities=21% Similarity=0.297 Sum_probs=259.8
Q ss_pred EEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEe----c----CCCChhHHHHHHHHHHHhccccccCCCccc
Q 006969 82 VFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG----F----PAASKEDFEAVRTIAKEVGNAVDAESGYVP 152 (623)
Q Consensus 82 I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~Gvd~IEvG----f----P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~ 152 (623)
|+|||||||+|++ +.+|++++|++|++.|+++||+.||+| | +..++++|+.++.+.+..++ .
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~---------~ 71 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPN---------T 71 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCC---------C
Confidence 6899999999999 469999999999999999999999997 3 44678899999999876543 3
Q ss_pred eEEeeccc-------------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 006969 153 VICGLSRC-------------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 219 (623)
Q Consensus 153 ~i~~~~r~-------------~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~ 219 (623)
.+++|+|. .+.+++++++ +|++.|++|.+.||. +++..+++++|++|+.
T Consensus 72 ~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~----~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~ 133 (582)
T TIGR01108 72 PLQMLLRGQNLLGYRHYADDVVERFVKKAVE----NGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAH 133 (582)
T ss_pred EEEEEEccccccccccCchhhHHHHHHHHHH----CCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCE
Confidence 67788774 2345566655 499999999999984 4577888999999985
Q ss_pred eEEEc--ccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH
Q 006969 220 DVEFS--PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 297 (623)
Q Consensus 220 ~V~f~--~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA 297 (623)
|+++ ..+..+++++|+.++++++.++||++|+||||+|.++|.+++++|+.+++.++ ++|++|||||+|||+|
T Consensus 134 -v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~----~pi~~H~Hnt~Gla~A 208 (582)
T TIGR01108 134 -AQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG----LPVHLHSHATTGMAEM 208 (582)
T ss_pred -EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC----CceEEEecCCCCcHHH
Confidence 6653 22344579999999999999999999999999999999999999999999985 6799999999999999
Q ss_pred HHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCc
Q 006969 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGA 377 (623)
Q Consensus 298 NslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~ 377 (623)
|+++|+++||++||+|++|||||+||++||+++++|+. .|+++++|+++|.++++++++
T Consensus 209 n~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~------~g~~tgid~~~L~~l~~~~~~--------------- 267 (582)
T TIGR01108 209 ALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRG------TGYDTGLDIELLLEIAAYFRE--------------- 267 (582)
T ss_pred HHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHh------cCCCcccCHHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999985 378899999999999999998
Q ss_pred chhhcccccccccccccCCccccCCCcccCCcccccceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 006969 378 NAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKELGYELNDEQLGTIFWHFKAVA 454 (623)
Q Consensus 378 ~aF~h~sGiH~dgi~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~--~~i~~~l~~lG~~l~~~~~~~~~~~iK~la 454 (623)
+.| .|++|+|+.+|..+ ++++...+|. +++...|+++|+. +.+.++++++++.-
T Consensus 268 -------------v~~---~Y~~~~~~~~~~~~----~v~~~e~pGG~~snl~~ql~~~g~~---~~~~~vl~e~~~v~ 323 (582)
T TIGR01108 268 -------------VRK---KYSQFEGQLKGPDS----RILVAQVPGGMLSNLESQLKEQNAL---DKLDEVLEEIPRVR 323 (582)
T ss_pred -------------HHH---HhhcCCCcccCCCc----cEEEEcCCCchHHHHHHHHHHCCCH---HHHHHHHHHHHHHH
Confidence 223 69999999999876 4999999999 9999999999986 67888888888764
No 34
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=3.6e-49 Score=419.05 Aligned_cols=247 Identities=25% Similarity=0.326 Sum_probs=219.3
Q ss_pred CceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecC-------------CCChhHHHHHHHHHHHhcccc
Q 006969 78 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFP-------------AASKEDFEAVRTIAKEVGNAV 144 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP-------------~~s~~d~e~v~~i~~~~~~~~ 144 (623)
++|+|+|||||||+|++++.|++++|++|++.|+++||++||+||+ ..+ +++.++.+.+..++
T Consensus 2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~--~~e~i~~~~~~~~~-- 77 (337)
T PRK08195 2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT--DEEYIEAAAEVVKQ-- 77 (337)
T ss_pred CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC--HHHHHHHHHHhCCC--
Confidence 4699999999999999999999999999999999999999999643 222 67888888765433
Q ss_pred ccCCCccceEEee---cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE
Q 006969 145 DAESGYVPVICGL---SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV 221 (623)
Q Consensus 145 ~~~~~l~~~i~~~---~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V 221 (623)
.++.+| ++++.+|+++++++ |++.|+++...++. +.+.+.++++|++|++ |
T Consensus 78 -------~~~~~ll~pg~~~~~dl~~a~~~----gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~-v 131 (337)
T PRK08195 78 -------AKIAALLLPGIGTVDDLKMAYDA----GVRVVRVATHCTEA--------------DVSEQHIGLARELGMD-T 131 (337)
T ss_pred -------CEEEEEeccCcccHHHHHHHHHc----CCCEEEEEEecchH--------------HHHHHHHHHHHHCCCe-E
Confidence 244444 45688999988876 89999998866653 3467899999999986 8
Q ss_pred EEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 006969 222 EFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (623)
Q Consensus 222 ~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 301 (623)
.++++++++++++++.++++.+.++|+++|+|+||+|.++|++++++|+.+++++++ +++|++|+|||+|||+||+++
T Consensus 132 ~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~--~i~ig~H~HnnlGla~ANsla 209 (337)
T PRK08195 132 VGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKP--DTQVGFHGHNNLGLGVANSLA 209 (337)
T ss_pred EEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCC--CCeEEEEeCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999942 478999999999999999999
Q ss_pred HHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 302 GACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 302 Av~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
|+++||++||+|++|||+|+||++||++++.|+. +|+.+++|+.+|.++++.+.+
T Consensus 210 Ai~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~------~g~~tgidl~~l~~~a~~~~~ 264 (337)
T PRK08195 210 AVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLDR------MGWETGVDLYKLMDAAEDLVR 264 (337)
T ss_pred HHHhCCCEEEecChhhcccccCccHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999986 478899999999999998764
No 35
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=9.9e-49 Score=414.82 Aligned_cols=246 Identities=26% Similarity=0.320 Sum_probs=218.3
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEec-------------CCCChhHHHHHHHHHHHhccccc
Q 006969 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF-------------PAASKEDFEAVRTIAKEVGNAVD 145 (623)
Q Consensus 79 ~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf-------------P~~s~~d~e~v~~i~~~~~~~~~ 145 (623)
+|+|+|||||||+|+.++.|++++|++|++.|+++||++||+|+ |.. .+++.++.+.+.+++
T Consensus 2 ~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~--~~~e~i~~~~~~~~~--- 76 (333)
T TIGR03217 2 KLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAH--TDLEYIEAAADVVKR--- 76 (333)
T ss_pred CcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCC--ChHHHHHHHHHhCCC---
Confidence 58999999999999999999999999999999999999999963 332 367888888876543
Q ss_pred cCCCccceEEeec---ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE
Q 006969 146 AESGYVPVICGLS---RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE 222 (623)
Q Consensus 146 ~~~~l~~~i~~~~---r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~ 222 (623)
..+.+|. +++.+|++++.++ |++.|+++...++. +.+.+.++++|++|++ |.
T Consensus 77 ------~~~~~ll~pg~~~~~dl~~a~~~----gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~-v~ 131 (333)
T TIGR03217 77 ------AKVAVLLLPGIGTVHDLKAAYDA----GARTVRVATHCTEA--------------DVSEQHIGMARELGMD-TV 131 (333)
T ss_pred ------CEEEEEeccCccCHHHHHHHHHC----CCCEEEEEeccchH--------------HHHHHHHHHHHHcCCe-EE
Confidence 2344443 4688999988876 89999998876653 3467899999999996 88
Q ss_pred EcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 006969 223 FSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (623)
Q Consensus 223 f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 302 (623)
++++++++++++++.++++.+.++|+++|+|+||+|.++|+++.++|+.+++++++ +++|++|+|||+|||+||+++|
T Consensus 132 ~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~--~i~ig~H~HnnlGla~ANslaA 209 (333)
T TIGR03217 132 GFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKP--ETQVGFHAHHNLSLAVANSIAA 209 (333)
T ss_pred EEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCC--CceEEEEeCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999863 4789999999999999999999
Q ss_pred HHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHH
Q 006969 303 ACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (623)
Q Consensus 303 v~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 362 (623)
+++||++||+|++|||+|+||++||++++.|+. +|+.+++|+.+|.++++.+-.
T Consensus 210 i~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~------~g~~tgidl~~l~~~a~~~v~ 263 (333)
T TIGR03217 210 IEAGATRIDASLRGLGAGAGNAPLEVFVAVLDR------LGWNTGCDLFKLMDAAEDIVR 263 (333)
T ss_pred HHhCCCEEEeecccccccccCccHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 478899999999999976654
No 36
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=4.2e-48 Score=436.20 Aligned_cols=301 Identities=21% Similarity=0.272 Sum_probs=262.6
Q ss_pred CceEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEe----cCC----CChhHHHHHHHHHHHhccccccCC
Q 006969 78 NYVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 148 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~g-~~~t~e~Kl~Ia~~L~~~Gvd~IEvG----fP~----~s~~d~e~v~~i~~~~~~~~~~~~ 148 (623)
++|.|+|||||||+|+++ ..|++++|++|++.|+++|++.||+| |+. .++++|+.++.+++.+++.
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~----- 76 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNT----- 76 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCC-----
Confidence 569999999999999996 68999999999999999999999997 442 4678899999999875442
Q ss_pred CccceEEeeccc-------------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 006969 149 GYVPVICGLSRC-------------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS 215 (623)
Q Consensus 149 ~l~~~i~~~~r~-------------~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~ 215 (623)
.+++|+|. .+.+++++++ +|++.|++|.+.||+ +++..+++++|+
T Consensus 77 ----~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~----~Gvd~irif~~lnd~--------------~n~~~~i~~ak~ 134 (592)
T PRK09282 77 ----PLQMLLRGQNLVGYRHYPDDVVEKFVEKAAE----NGIDIFRIFDALNDV--------------RNMEVAIKAAKK 134 (592)
T ss_pred ----EEEEEeccccccccccccchhhHHHHHHHHH----CCCCEEEEEEecChH--------------HHHHHHHHHHHH
Confidence 46666664 3445666655 499999999999985 456788899999
Q ss_pred cCCCeEEE--cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcc
Q 006969 216 LGCDDVEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLG 293 (623)
Q Consensus 216 ~G~~~V~f--~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~G 293 (623)
+|.. |++ +..+..+.+++|++++++++.++|+++|+||||+|.++|.+++++|+.+++.++ ++|++|||||.|
T Consensus 135 ~G~~-v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~G 209 (592)
T PRK09282 135 AGAH-VQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD----LPVQLHSHCTSG 209 (592)
T ss_pred cCCE-EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC----CeEEEEEcCCCC
Confidence 9985 543 333345688999999999999999999999999999999999999999999984 689999999999
Q ss_pred hHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCc
Q 006969 294 LSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKA 373 (623)
Q Consensus 294 lAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~p 373 (623)
||+||+++|+++||++||+|++|||||+||++||+++.+|+.+ |+++++|+..|.+++++++++.
T Consensus 210 la~An~laAv~aGad~vD~ai~g~g~~agn~~~e~vv~~L~~~------g~~~~idl~~l~~~s~~~~~~~--------- 274 (592)
T PRK09282 210 LAPMTYLKAVEAGVDIIDTAISPLAFGTSQPPTESMVAALKGT------PYDTGLDLELLFEIAEYFREVR--------- 274 (592)
T ss_pred cHHHHHHHHHHhCCCEEEeeccccCCCcCCHhHHHHHHHHHhC------CCCCccCHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999863 6789999999999999999987
Q ss_pred ccCcchhhcccccccccccccCCccccCCCcccCCcccccceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006969 374 IVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKELGYELNDEQLGTIFWHFK 451 (623)
Q Consensus 374 ivG~~aF~h~sGiH~dgi~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG~--~~i~~~l~~lG~~l~~~~~~~~~~~iK 451 (623)
..|++++|+..|..+ ++.....+|. +++...|+++|+ .+.+.+++++++
T Consensus 275 ----------------------~~y~~~~~~~~~~~~----~v~~~~~pGg~~snl~~q~~~~g~---~d~~~~vl~e~~ 325 (592)
T PRK09282 275 ----------------------KKYKQFESEFTIVDT----RVLIHQVPGGMISNLVSQLKEQNA---LDKLDEVLEEIP 325 (592)
T ss_pred ----------------------HHhhcCCCccccCCc----cEEEEcCCCcHHHHHHHHHHHCCc---HHHHHHHHHHHH
Confidence 469999999999876 4999999999 999999999998 347888888888
Q ss_pred HHH
Q 006969 452 AVA 454 (623)
Q Consensus 452 ~la 454 (623)
+.-
T Consensus 326 ~v~ 328 (592)
T PRK09282 326 RVR 328 (592)
T ss_pred HHH
Confidence 653
No 37
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=6.3e-48 Score=423.30 Aligned_cols=278 Identities=19% Similarity=0.255 Sum_probs=239.5
Q ss_pred CceEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEe----cCC----CChhHHHHHHHHHHHhccccccCC
Q 006969 78 NYVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 148 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~g-~~~t~e~Kl~Ia~~L~~~Gvd~IEvG----fP~----~s~~d~e~v~~i~~~~~~~~~~~~ 148 (623)
++|.|+|||||||+|+++ .+|++++|+.|++.|+++||+.||+| |+. .++.+||.++.+++.+++.
T Consensus 3 ~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt----- 77 (499)
T PRK12330 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNS----- 77 (499)
T ss_pred CCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC-----
Confidence 469999999999999998 99999999999999999999999998 665 5677899999999987653
Q ss_pred CccceEEeecc-------------cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 006969 149 GYVPVICGLSR-------------CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS 215 (623)
Q Consensus 149 ~l~~~i~~~~r-------------~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~ 215 (623)
.++.|+| ..+.+|+.++++ |++.++||.+.||+ +.+..+++.+++
T Consensus 78 ----~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~----Gidi~RIfd~lndv--------------~nl~~ai~~vk~ 135 (499)
T PRK12330 78 ----RLQMLLRGQNLLGYRHYEDEVVDRFVEKSAEN----GMDVFRVFDALNDP--------------RNLEHAMKAVKK 135 (499)
T ss_pred ----eEEEEEcccccCCccCcchhHHHHHHHHHHHc----CCCEEEEEecCChH--------------HHHHHHHHHHHH
Confidence 5777777 335667776665 99999999999996 334455666666
Q ss_pred cCCC---eEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCc
Q 006969 216 LGCD---DVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 292 (623)
Q Consensus 216 ~G~~---~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~ 292 (623)
.|.. .++|. .....+++|++++++.+.++||++|+|+||+|.++|.+++++|+.+++.+|+ +++|++|||||+
T Consensus 136 ag~~~~~~i~yt--~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~--~ipI~~H~Hnt~ 211 (499)
T PRK12330 136 VGKHAQGTICYT--VSPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGE--DTRINLHCHSTT 211 (499)
T ss_pred hCCeEEEEEEEe--cCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCC--CCeEEEEeCCCC
Confidence 6653 24552 1335799999999999999999999999999999999999999999999962 478999999999
Q ss_pred chHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHH---------
Q 006969 293 GLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEY--------- 363 (623)
Q Consensus 293 GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~--------- 363 (623)
|||+||+++|+++||++||+|++|||+|+||++||+++++|+. .|+++++|+++|.+++++++++
T Consensus 212 GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~------~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~~ 285 (499)
T PRK12330 212 GVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEG------TGYTTKLDMDRLLKIRDHFKKVRPKYKEFES 285 (499)
T ss_pred CcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999996 3788999999999999888775
Q ss_pred --hCCCCCCCCc-ccCcchhhccccccccccc
Q 006969 364 --TGLHVQPHKA-IVGANAFAHESGIHQDGML 392 (623)
Q Consensus 364 --~g~~i~~~~p-ivG~~aF~h~sGiH~dgi~ 392 (623)
.+......++ +.|.+.|.|++++|+.|..
T Consensus 286 ~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~ 317 (499)
T PRK12330 286 KTTGVETEIFKSQIPGGMLSNMESQLKQQGAG 317 (499)
T ss_pred cccCCCCccccCCCCCCchhhHHHHHHHcChh
Confidence 2344555666 9999999999999999853
No 38
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.2e-47 Score=419.47 Aligned_cols=260 Identities=22% Similarity=0.278 Sum_probs=223.2
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEe----cCC----CChhHHHHHHHHHHHhccccccCC
Q 006969 78 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 148 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~Gvd~IEvG----fP~----~s~~d~e~v~~i~~~~~~~~~~~~ 148 (623)
++|.|+|||||||+|++ +.+|++++|++|++.|+++||+.||++ |+. .++++||.++.+.+.+++......
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l 81 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQML 81 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 46999999999999998 679999999999999999999999996 554 577889999999887554321111
Q ss_pred CccceEEeeccc----chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEE
Q 006969 149 GYVPVICGLSRC----NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEF 223 (623)
Q Consensus 149 ~l~~~i~~~~r~----~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~-V~f 223 (623)
.+.+++.||.+. .+++|++++++ |++.|++|.+.||.| ++.++|+++|++|... +.+
T Consensus 82 ~r~~N~~G~~~~pddvv~~~v~~A~~~----Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 82 LRGQNLLGYRNYADDVVESFVQKSVEN----GIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred eccccccccccCchhhHHHHHHHHHHC----CCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEE
Confidence 223445566553 45566776664 999999999999975 2556899999999751 335
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 006969 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (623)
Q Consensus 224 ~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 303 (623)
+.+++.+++++|+.++++.+.++|+++|+|+||+|+++|.+++++|+.+++.++ ++|++|||||+|||+||+++|+
T Consensus 144 ~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~----~pi~~H~Hnt~GlA~AN~laAi 219 (448)
T PRK12331 144 SYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT----VPLEVHTHATSGIAEMTYLKAI 219 (448)
T ss_pred EeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCCcHHHHHHHHH
Confidence 666778999999999999999999999999999999999999999999999984 6899999999999999999999
Q ss_pred HhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhC
Q 006969 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (623)
Q Consensus 304 ~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g 365 (623)
++||++||+|++|||+|+||++||+++++|+. .|+++++|++.|.+++++++++..
T Consensus 220 eaGad~vD~sv~glg~gaGN~~tE~lv~~L~~------~g~~tgidl~~L~~~~~~~~~~r~ 275 (448)
T PRK12331 220 EAGADIIDTAISPFAGGTSQPATESMVAALQD------LGYDTGLDLEELSEIAEYFNPIRD 275 (448)
T ss_pred HcCCCEEEeeccccCCCcCCHhHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 378899999999999999988643
No 39
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=7.1e-46 Score=406.17 Aligned_cols=253 Identities=21% Similarity=0.269 Sum_probs=216.5
Q ss_pred ceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEecCC--------CChhHHHHHHHHHHHhccccccCCC
Q 006969 79 YVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAESG 149 (623)
Q Consensus 79 ~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~--------~s~~d~e~v~~i~~~~~~~~~~~~~ 149 (623)
+|.|+|||||||+|++ +..|++++|++|++.|+++||+.||+|.++ .++++||.++.+.+.+++.
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~------ 75 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNT------ 75 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCC------
Confidence 4899999999999999 589999999999999999999999996332 4677899999998865432
Q ss_pred ccceEEeeccc--------chhh-HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe
Q 006969 150 YVPVICGLSRC--------NERD-IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD 220 (623)
Q Consensus 150 l~~~i~~~~r~--------~~~d-I~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~ 220 (623)
.+++|+|. .++| ++..++....+|+++|++|.+.||+ +++..+++++|++|..
T Consensus 76 ---~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~- 137 (467)
T PRK14041 76 ---KIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAH- 137 (467)
T ss_pred ---EEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCE-
Confidence 45555554 4566 2333333344599999999999983 4567888999999985
Q ss_pred EEE--cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH
Q 006969 221 VEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298 (623)
Q Consensus 221 V~f--~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 298 (623)
|+. +.....+.+++|+.++++.+.++||++|+|+||+|+++|.+++++|+.+++.++ ++|++|||||+|||+||
T Consensus 138 v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~----vpI~~H~Hnt~GlA~AN 213 (467)
T PRK14041 138 VQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG----VPVEVHSHCTTGLASLA 213 (467)
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC----CceEEEecCCCCcHHHH
Confidence 552 222334788999999999999999999999999999999999999999999985 67999999999999999
Q ss_pred HHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhC
Q 006969 299 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (623)
Q Consensus 299 slaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g 365 (623)
+++|+++||++||+|++|+|+|+||++||+++++|+. .|+++++|+++|.+++++++++..
T Consensus 214 ~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~------~g~~tgiDl~~L~~~~~~~~~vr~ 274 (467)
T PRK14041 214 YLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRE------NGKETDFDRKALKFLVEYFTKVRE 274 (467)
T ss_pred HHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986 378899999999999999998754
No 40
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.8e-41 Score=367.91 Aligned_cols=255 Identities=21% Similarity=0.303 Sum_probs=217.2
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEe----cCC----CChhHHHHHHHHHHHhccccccCC
Q 006969 78 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 148 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~Gvd~IEvG----fP~----~s~~d~e~v~~i~~~~~~~~~~~~ 148 (623)
++|.|+|||||||.|++ ..+|+++|++.|+..|+++|+..||++ |.. ..+.+||.++.+++.+++.
T Consensus 11 ~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt----- 85 (468)
T PRK12581 11 QQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNT----- 85 (468)
T ss_pred CceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC-----
Confidence 36999999999999995 578999999999999999999999995 321 3456799999999987764
Q ss_pred CccceEEeecccc--------hhh-HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 006969 149 GYVPVICGLSRCN--------ERD-IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 219 (623)
Q Consensus 149 ~l~~~i~~~~r~~--------~~d-I~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~ 219 (623)
.++.|.|.. ++| ++..++.....|++.+.+|.+..| ++.+..+++.+|+.|..
T Consensus 86 ----~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd--------------~~n~~~ai~~ak~~G~~ 147 (468)
T PRK12581 86 ----RLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALND--------------PRNIQQALRAVKKTGKE 147 (468)
T ss_pred ----ceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC--------------HHHHHHHHHHHHHcCCE
Confidence 345555541 245 344455556679999999998776 46677899999999985
Q ss_pred eEEE--cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH
Q 006969 220 DVEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 297 (623)
Q Consensus 220 ~V~f--~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA 297 (623)
+++ +.++....+.+|+.++++.+.++|+++|+|+||+|.++|.+++++|+.+++. + +++|++|||||+|||+|
T Consensus 148 -~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~---~~pi~~H~Hnt~GlA~A 222 (468)
T PRK12581 148 -AQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-T---NLPLIVHTHATSGISQM 222 (468)
T ss_pred -EEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-c---CCeEEEEeCCCCccHHH
Confidence 333 3334456789999999999999999999999999999999999999999984 3 37899999999999999
Q ss_pred HHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCC
Q 006969 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 366 (623)
Q Consensus 298 NslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~ 366 (623)
|+++|+++||++||+|++|+|+|+||++||+++++|+. .|+++++|+++|.+++++++++...
T Consensus 223 n~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~------~g~~tgiDl~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 223 TYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKE------AGYDITLDETLLEQAANHLRQARQK 285 (468)
T ss_pred HHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 3788999999999999999987554
No 41
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=3.9e-42 Score=411.74 Aligned_cols=274 Identities=23% Similarity=0.254 Sum_probs=229.2
Q ss_pred CCCCCCceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHc--CCCEEEEec--------CCCChhHHHHHHHHHHHhc
Q 006969 73 RIPDPNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKL--GVDIIEAGF--------PAASKEDFEAVRTIAKEVG 141 (623)
Q Consensus 73 ~~~~~~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~--Gvd~IEvGf--------P~~s~~d~e~v~~i~~~~~ 141 (623)
++-+.++|.|+|||||||+|++ +.+|++++|+.|++.|+++ |++.||+|+ +..++.+|+.++.+++.++
T Consensus 526 ~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~ 605 (1146)
T PRK12999 526 WLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAP 605 (1146)
T ss_pred HHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCC
Confidence 4444578999999999999998 7999999999999999999 999999997 4567788999999999876
Q ss_pred cccccCCCccceEEeeccc---------c----hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHH
Q 006969 142 NAVDAESGYVPVICGLSRC---------N----ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARS 208 (623)
Q Consensus 142 ~~~~~~~~l~~~i~~~~r~---------~----~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~ 208 (623)
+. .++.|+|+ . .++|+.+++ +|++.+++|.+.+++ +.+..
T Consensus 606 ~~---------~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~----~Gid~~rifd~lnd~--------------~~~~~ 658 (1146)
T PRK12999 606 NV---------LFQMLLRGSNAVGYTNYPDNVVRAFVREAAA----AGIDVFRIFDSLNWV--------------ENMRV 658 (1146)
T ss_pred CC---------eEEEEecccccccccCCCchHHHHHHHHHHH----cCCCEEEEeccCChH--------------HHHHH
Confidence 54 45555554 2 222555554 599999999998873 44667
Q ss_pred HHHHHHHcCCC-eEEEccc----CCCC--CCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcc
Q 006969 209 MVKFARSLGCD-DVEFSPE----DAGR--SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIEN 281 (623)
Q Consensus 209 ~v~~ak~~G~~-~V~f~~e----da~r--~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~ 281 (623)
+++.+|+.|.. .+.+|.+ |.+| ++++|++++++.+.++|+++|+|+||+|.++|.+++++|+.+|++++
T Consensus 659 ~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~---- 734 (1146)
T PRK12999 659 AIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVD---- 734 (1146)
T ss_pred HHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcC----
Confidence 78888888853 2556666 7777 69999999999999999999999999999999999999999999983
Q ss_pred eeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHH
Q 006969 282 VVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVE 361 (623)
Q Consensus 282 v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~ 361 (623)
++|++|||||+|||+||+++|+++||++||+|++|||+|+||++||+++++|+. .|+++++|++.|.+++++++
T Consensus 735 ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~------~~~~t~idl~~l~~~s~~~~ 808 (1146)
T PRK12999 735 LPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEG------TERDTGLDLDAIRKLSPYWE 808 (1146)
T ss_pred CeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999995 37889999999999999999
Q ss_pred HHhCCCCCCCCcccCc--chhhcc
Q 006969 362 EYTGLHVQPHKAIVGA--NAFAHE 383 (623)
Q Consensus 362 ~~~g~~i~~~~pivG~--~aF~h~ 383 (623)
++-..--+......+- +++.|+
T Consensus 809 ~~r~~y~~~~~~~~~~~~~v~~~~ 832 (1146)
T PRK12999 809 AVRPYYAPFESGLKSPTTEVYLHE 832 (1146)
T ss_pred HHHhHhhccCCCCCCCCcCeEEec
Confidence 9865432222222333 366665
No 42
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=2.7e-39 Score=362.57 Aligned_cols=265 Identities=15% Similarity=0.165 Sum_probs=224.4
Q ss_pred CCceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEecCC--------CChhHHHHHHHHHHHhccccccC
Q 006969 77 PNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAE 147 (623)
Q Consensus 77 ~~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~--------~s~~d~e~v~~i~~~~~~~~~~~ 147 (623)
+++|.|.|||||||.|+. ..+|++++.+.|+..|+++|+..||++..+ ..+.+||.++.+++.++|.....
T Consensus 1 ~~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqm 80 (596)
T PRK14042 1 MSKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSM 80 (596)
T ss_pred CCceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEE
Confidence 367999999999999976 789999999999999999999999997432 23457999999999887754432
Q ss_pred CCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE-EEccc
Q 006969 148 SGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV-EFSPE 226 (623)
Q Consensus 148 ~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V-~f~~e 226 (623)
.-...++.|+.....+-++..++.....|++.+.+|.+..| ++.+..+++.+|+.|.... .+|..
T Consensus 81 L~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i~~~k~~G~~~~~~i~yt 146 (596)
T PRK14042 81 LLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAIDAIKSHKKHAQGAICYT 146 (596)
T ss_pred EeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHHHHHHHcCCEEEEEEEec
Confidence 11123566777665555666666666679999999999887 4556678999999997521 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 006969 227 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 227 da~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 306 (623)
.....+++|+.++++.+.++|+++|+|+||+|.++|.+++++|+.+++.++ ++|++|+|||+|||+||+++|+++|
T Consensus 147 ~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~----ipi~~H~Hnt~Gla~an~laAieaG 222 (596)
T PRK14042 147 TSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG----LPVHLHSHSTSGLASICHYEAVLAG 222 (596)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC----CEEEEEeCCCCCcHHHHHHHHHHhC
Confidence 345789999999999999999999999999999999999999999999874 7899999999999999999999999
Q ss_pred CCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhC
Q 006969 307 ARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (623)
Q Consensus 307 A~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g 365 (623)
|++||+|++|||+|+||++||+++++|+. .|+++++|+++|.+++++++++..
T Consensus 223 ad~iD~ai~glGg~tGn~~tE~lv~~L~~------~g~~tgidl~~l~~~~~~~~~vr~ 275 (596)
T PRK14042 223 CNHIDTAISSFSGGASHPPTEALVAALTD------TPYDTELDLNILLEIDDYFKAVRK 275 (596)
T ss_pred CCEEEeccccccCCCCcHhHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 378899999999999999998754
No 43
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-34 Score=277.83 Aligned_cols=271 Identities=21% Similarity=0.346 Sum_probs=237.3
Q ss_pred CCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH---HHHHHHHHHHhccccccCCC
Q 006969 76 DPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED---FEAVRTIAKEVGNAVDAESG 149 (623)
Q Consensus 76 ~~~~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d---~e~v~~i~~~~~~~~~~~~~ 149 (623)
-|++++|.++..|||.|......+++-|++++++|.+.|+..||..+ |.+.|+- .|.++.+.+..+..
T Consensus 15 ~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~~~Gv~------ 88 (316)
T KOG2368|consen 15 APKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRKFPGVS------ 88 (316)
T ss_pred ccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhcCCCcc------
Confidence 35679999999999999999999999999999999999999999984 7777763 36666666543322
Q ss_pred ccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---eE--EEc
Q 006969 150 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DV--EFS 224 (623)
Q Consensus 150 l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~---~V--~f~ 224 (623)
| |++ + .+.++++.|+.+ |...|.+|.+.||.+..+++|++.||.+.+..+.++.|+++++. +| .++
T Consensus 89 y-PVL---t-PNlkGf~~Avaa----Ga~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvG 159 (316)
T KOG2368|consen 89 Y-PVL---T-PNLKGFEAAVAA----GAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVG 159 (316)
T ss_pred c-ccc---C-cchhhHHHHHhc----CceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEec
Confidence 1 222 2 266778877775 89999999999999999999999999999999999999999875 22 233
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 006969 225 PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (623)
Q Consensus 225 ~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 304 (623)
+...+...|+.+.++.+++.++|...|.|.||.|..+|..+.+++..+.+.+|. -.+.+||||++|.|+||.|.+++
T Consensus 160 CPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa---~~LAVH~HDTYGQALaNiL~slq 236 (316)
T KOG2368|consen 160 CPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPA---EKLAVHCHDTYGQALANILVSLQ 236 (316)
T ss_pred CCccCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCH---HHhhhhhhhhHHHHHHHHHHHHH
Confidence 337888999999999999999999999999999999999999999999999985 35999999999999999999999
Q ss_pred hCCCEEEeccCCccC------ccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCC
Q 006969 305 AGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQP 370 (623)
Q Consensus 305 aGA~~Vd~Tv~GlGE------RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~ 370 (623)
.|.+.+|.++.|+|+ ..||+++|++++.|+. .|++|++|+.+|.++.+++.+..|.+-..
T Consensus 237 mGi~vvDSsvaGLGGCPYAkGAsGN~ATEDlvYmL~G------lG~~TgVnL~Klieag~fi~~algr~~~S 302 (316)
T KOG2368|consen 237 MGIRVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNG------LGLHTGVNLDKLIEAGDFICKALGRTTWS 302 (316)
T ss_pred hcceehhhhccccCCCCccccCCCCchHHHHHHHHhc------CCcccCcCHHHHHHHHHHHHHHhCCCchh
Confidence 999999999999998 6799999999999996 48999999999999999999999986543
No 44
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=3.6e-34 Score=342.02 Aligned_cols=283 Identities=21% Similarity=0.213 Sum_probs=233.4
Q ss_pred CCceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHc--CCCEEEEecCCC--------ChhHHHHHHHHHHHhccccc
Q 006969 77 PNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKL--GVDIIEAGFPAA--------SKEDFEAVRTIAKEVGNAVD 145 (623)
Q Consensus 77 ~~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~--Gvd~IEvGfP~~--------s~~d~e~v~~i~~~~~~~~~ 145 (623)
.++|.|.|||||||.|+. ..+|.+++.+.|+..++++ |+..+|+.-.+. .+.-|+.++.+.+.++|.+.
T Consensus 528 ~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~ 607 (1143)
T TIGR01235 528 QKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILF 607 (1143)
T ss_pred cCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCce
Confidence 467999999999999998 5799999999999999995 999999943322 22348999999998887655
Q ss_pred cCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---eEE
Q 006969 146 AESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DVE 222 (623)
Q Consensus 146 ~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~---~V~ 222 (623)
+......++.|+.....+-++..++.....|++++.+|.+..+ +++++.+++.+|+.|.. .++
T Consensus 608 qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~--------------~~n~~~~~~~~~~~g~~~~~~i~ 673 (1143)
T TIGR01235 608 QMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNW--------------VENMRVGMDAVAEAGKVVEAAIC 673 (1143)
T ss_pred eeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcC--------------HHHHHHHHHHHHHcCCEEEEEEE
Confidence 5422245677777766666777777777789999999999887 56677889999999974 234
Q ss_pred Ec--ccCCC--CCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH
Q 006969 223 FS--PEDAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298 (623)
Q Consensus 223 f~--~eda~--r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 298 (623)
|. ..|.. .++++|++++++.+.++|+++|+|+||+|.++|.+++++|+.|++++. ++|++|||||+|||+||
T Consensus 674 yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~----~pi~~H~Hdt~Gla~an 749 (1143)
T TIGR01235 674 YTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTD----LPIHFHTHDTSGIAVAS 749 (1143)
T ss_pred EeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCCcHHHH
Confidence 43 22333 468999999999999999999999999999999999999999999982 78999999999999999
Q ss_pred HHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCC--CCCCCcccC
Q 006969 299 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLH--VQPHKAIVG 376 (623)
Q Consensus 299 slaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~--i~~~~pivG 376 (623)
+++|+++||++||+|++|||++++++++|+++++|+.. |+++++|+++|.+++++++++-..- ......-.-
T Consensus 750 ~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~------~~~tgidl~~l~~is~~~~~vr~~y~~~~~~~~~~~ 823 (1143)
T TIGR01235 750 MLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGS------ERDPGLNVAWIRELSAYWEAVRNLYAAFESDLKGPA 823 (1143)
T ss_pred HHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhC------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCcCCC
Confidence 99999999999999999999999999999999999863 6789999999999999999974432 233332233
Q ss_pred cchhhcc
Q 006969 377 ANAFAHE 383 (623)
Q Consensus 377 ~~aF~h~ 383 (623)
..++.|+
T Consensus 824 ~~v~~~~ 830 (1143)
T TIGR01235 824 SEVYLHE 830 (1143)
T ss_pred cCeEEec
Confidence 4566664
No 45
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.8e-31 Score=278.40 Aligned_cols=313 Identities=21% Similarity=0.332 Sum_probs=248.8
Q ss_pred CCceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEecCCC---------ChhHHHHHHHHHHHhcccccc
Q 006969 77 PNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPAA---------SKEDFEAVRTIAKEVGNAVDA 146 (623)
Q Consensus 77 ~~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~---------s~~d~e~v~~i~~~~~~~~~~ 146 (623)
+++|.|.||+||||.|+. ..+|++++.+.|++.||+.|+-..|+. .++ +++-|+.+|.+.+.++|...+
T Consensus 3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~W-GGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQ 81 (472)
T COG5016 3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVW-GGATFDACIRFLNEDPWERLRELKKAVPNTKLQ 81 (472)
T ss_pred cceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEec-CCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHH
Confidence 356999999999999997 789999999999999999999999994 322 344599999999988775433
Q ss_pred CCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe---EEE
Q 006969 147 ESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD---VEF 223 (623)
Q Consensus 147 ~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~---V~f 223 (623)
..-...++.|+-....+-+++-++.....|++.+++|.+.+|. +++..+++.+|++|... ++|
T Consensus 82 MLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~--------------RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 82 MLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDV--------------RNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred HHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccch--------------hHHHHHHHHHHhcCceeEEEEEe
Confidence 2111234555543333334555555555699999999999884 45567889999999751 233
Q ss_pred --cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 006969 224 --SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (623)
Q Consensus 224 --~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 301 (623)
+| -.+.++.+++++++.++|+|.|+|.|..|.++|.+.+++|+.+|+.++ ++|.+|||.+.|||.++.++
T Consensus 148 T~sP----vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~----~pv~lHtH~TsG~a~m~ylk 219 (472)
T COG5016 148 TTSP----VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP----VPVELHTHATSGMAEMTYLK 219 (472)
T ss_pred ccCC----cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC----CeeEEecccccchHHHHHHH
Confidence 34 478899999999999999999999999999999999999999999996 78999999999999999999
Q ss_pred HHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhh
Q 006969 302 GACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFA 381 (623)
Q Consensus 302 Av~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~ 381 (623)
|++||||.||+++..+..+++.+++|.++.+|+.. ++++|+|++.|.+++.++.++-.
T Consensus 220 AvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt------~yDtgld~~~l~~~~~yf~~vrk---------------- 277 (472)
T COG5016 220 AVEAGVDGIDTAISPLSGGTSQPATETMVAALRGT------GYDTGLDLELLEEIAEYFREVRK---------------- 277 (472)
T ss_pred HHHhCcchhhhhhccccCCCCCCcHHHHHHHhcCC------CCCccccHHHHHHHHHHHHHHHH----------------
Confidence 99999999999999999999999999999999964 67899999999999998886432
Q ss_pred cccccccccccccCCcc-ccCCCcccCCcccccceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 006969 382 HESGIHQDGMLKHKGTY-EIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKELGYELNDEQLGTIFWHFKAVAEQ 456 (623)
Q Consensus 382 h~sGiH~dgi~k~~~~Y-e~~~Pe~vG~~r~~~~~i~lg~~SG~--~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~ 456 (623)
-| -.++|...|.. .+|++...-|- +++..-|+|.|. .+.++++++++.+.-+.
T Consensus 278 ---------------kY~~~~~~~~~~~d----~~ili~qvPGGMlSNl~sQLkeqna---ldK~~eVLeEvprVred 333 (472)
T COG5016 278 ---------------KYKGLLEPQAKGVD----PRILIYQVPGGMLSNLESQLKEQNA---LDKLEEVLEEVPRVRED 333 (472)
T ss_pred ---------------HHhhccCccccCCC----CcceEeeCChHHHHHHHHHHHHcch---hhHHHHHHHHhHHHHhh
Confidence 24 34566666643 34888888774 245555666553 34677888888776533
No 46
>PF08502 LeuA_dimer: LeuA allosteric (dimerisation) domain; InterPro: IPR013709 This is the C-terminal regulatory (R) domain of alpha-isopropylmalate synthase, which catalyses the first committed step in the leucine biosynthetic pathway []. This domain, is an internally duplicated structure with a novel fold []. It comprises two similar units that are arranged such that the two -helices pack together in the centre, crossing at an angle of 34 degrees, sandwiched between the two three-stranded, antiparallel beta-sheets. The overall domain is thus constructed as a beta-alpha-beta three-layer sandwich []. ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process; PDB: 3HQ1_A 3HPZ_B 1SR9_A 3FIG_B 3HPS_A 3F6G_A 3F6H_A.
Probab=99.97 E-value=1.9e-29 Score=234.59 Aligned_cols=133 Identities=41% Similarity=0.581 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHHHHhcCCcceeEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEecCHHHHHHHHHHHhhCCCceeee
Q 006969 459 RVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLE 538 (623)
Q Consensus 459 ~v~d~dl~~L~~~~~~~~~~~~~L~~~~v~~g~~~~~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~~~~~~~v~L~d 538 (623)
+|+++||+.||.+.|...+++|+|.+|++.++..+.++++|++...+|+++...++|||||||+++||+++++.+++|.|
T Consensus 1 Ev~~~~i~~lf~~~y~~~~~~~~l~~~~v~~~~~~~~~a~v~l~~~~g~~~~~~~~GnGpv~A~~~Al~~~~g~~i~l~d 80 (133)
T PF08502_consen 1 EVTDEDIWALFEEEYLEVEEPYRLKSFQVSSGSGGRPTATVTLEVTDGEEHTISGTGNGPVDAFFNALNKALGIDIELID 80 (133)
T ss_dssp ---HHHHHHHHHHHHTS--SSEEEEEEEEEEETTCCEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHCHCCCEEEEEE
T ss_pred CcCHHHHHHHHHHHhCcCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCeEEEEEEECCChHHHHHHHHHHHcCCceEEEE
Confidence 47899999999999998889999999999999888899999998339999999999999999999999999999999999
Q ss_pred eEEeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEEecccHHHHHHHHHHHHHHhhh
Q 006969 539 YSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKML 604 (623)
Q Consensus 539 Y~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~ 604 (623)
|++|++++|+||+|+++|+|+.. +|+.|||+|+|+||+.||++||++|+||+|
T Consensus 81 y~~~al~~gsda~a~a~V~i~~~-------------~g~~~~G~g~~~Di~~As~~A~~~AiNr~l 133 (133)
T PF08502_consen 81 YSEHALGSGSDAQAEAYVEIEDE-------------DGRTVWGVGIDTDIVEASLKAYLSAINRLL 133 (133)
T ss_dssp EEEEESTTSTT-EEEEEEEEEE--------------GGGEEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEeccCCCCcEEEEEEEEEEC-------------CCcEEEEEEECCCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999953 378899999999999999999999999986
No 47
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.85 E-value=4.1e-20 Score=205.18 Aligned_cols=275 Identities=21% Similarity=0.240 Sum_probs=210.4
Q ss_pred CCCCCCCCCCCCceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcC--CCEEEEecCCC---------ChhHHHHHH
Q 006969 67 PEYIPNRIPDPNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLG--VDIIEAGFPAA---------SKEDFEAVR 134 (623)
Q Consensus 67 ~~~~~~~~~~~~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~~G--vd~IEvGfP~~---------s~~d~e~v~ 134 (623)
|.....|+-+-+.+-+.|||+||+.|++ ..++.+-+...||....++= .-..|. |.++ .+.-|+.++
T Consensus 523 P~~fa~wvr~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~-WGGATfDVamRFL~EdPWeRL~ 601 (1149)
T COG1038 523 PEGFARWVREQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEM-WGGATFDVAMRFLKEDPWERLE 601 (1149)
T ss_pred hHHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhh-hCCchHHHHHHHhccCHHHHHH
Confidence 3334444444578999999999999997 57888999999999988753 334455 4332 233488999
Q ss_pred HHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 006969 135 TIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR 214 (623)
Q Consensus 135 ~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak 214 (623)
.+.+.++|.+.+..-...+-.|+......-|+.-++--...|++.+.+|.+.+. ++.++-++...+
T Consensus 602 ~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNw--------------v~~M~vaidAV~ 667 (1149)
T COG1038 602 RLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNW--------------VEQMRVAIDAVR 667 (1149)
T ss_pred HHHHhCCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcc--------------hhhhhhHHHHHH
Confidence 998877765443311123444555444444544443334469999999988754 344555666666
Q ss_pred HcCCC---eEEEcc--cCCC--CCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEe
Q 006969 215 SLGCD---DVEFSP--EDAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 287 (623)
Q Consensus 215 ~~G~~---~V~f~~--eda~--r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H 287 (623)
+.|.- .+||+. -|-. ..+.+|+.++++++.++|+.++.+.|..|.+.|...+.||+.||+.+ ++||.+|
T Consensus 668 e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~----dlPIHlH 743 (1149)
T COG1038 668 EAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV----DLPIHLH 743 (1149)
T ss_pred hcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc----CCceEEe
Confidence 77742 245632 1333 35899999999999999999999999999999999999999999998 3789999
Q ss_pred ecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCC
Q 006969 288 CQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 366 (623)
Q Consensus 288 ~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~ 366 (623)
.|++.|.++|..++|++||+|.||+.+..|.+-+..+++-.++.+|... .-++++|.+.+.+++.|.+..-+.
T Consensus 744 THDTsG~~~at~~aA~~AGvDivD~A~~smsG~TSQPsl~si~~al~~~------~r~~~ld~~~~~~i~~YWe~vR~~ 816 (1149)
T COG1038 744 THDTSGNGVATYLAAVEAGVDIVDVAMASMSGLTSQPSLNSIVAALAGT------ERDTGLDIEAVRELSFYWEAVRKL 816 (1149)
T ss_pred ccCCCccHHHHHHHHHHcCCchhhhhhhhccCCCCCccHHHHHHHhcCC------CCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999862 246899999999999999986543
No 48
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=99.73 E-value=4.8e-25 Score=234.99 Aligned_cols=264 Identities=13% Similarity=-0.016 Sum_probs=191.8
Q ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHH
Q 006969 185 ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTE 264 (623)
Q Consensus 185 ~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~ 264 (623)
++++.|++.++.++..+.+.+..+++.++++.+.. +.+.+||+.+.++++...+.......+++.+.+|||+|.+.|.+
T Consensus 77 ~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~ 155 (344)
T TIGR02146 77 VAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILES-ARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVFGVDR 155 (344)
T ss_pred HHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHH-HHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCE
Confidence 34455555555555666677777777777777643 66677777777766666666655555667777778887777776
Q ss_pred HHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhccccccccc
Q 006969 265 FGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGL 344 (623)
Q Consensus 265 v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~ 344 (623)
+.-.....+. .|. ++...+|+|||.|++++|++.+...|+..+..|++|+|+|+||++++ +..|..+ .|.
T Consensus 156 i~~~dt~g~~-~p~--~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s--~~glG~~-----~G~ 225 (344)
T TIGR02146 156 VGIADTVGKA-APR--QVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTT--VLGIGER-----NGI 225 (344)
T ss_pred EEEcCCCCcC-CHH--HHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEE--eeeeeCC-----CCC
Confidence 5444433322 221 36688999999999999999999999999999999999999999996 3334332 132
Q ss_pred -ccCCChhHHHHHHHHHHHHhCCCCCCCCcccCcchhhcccccccccccccCCccccCCCcccCCcccccceEeeecccc
Q 006969 345 -YTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSG 423 (623)
Q Consensus 345 -~t~idl~~L~~~s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~Pe~vG~~r~~~~~i~lg~~SG 423 (623)
.+.+++..|..++.++...++..++.++|++|.+.|.|++|+|++|+.+++.+|++++|+.+|+++. +.++++||
T Consensus 226 ~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~----y~~~~~s~ 301 (344)
T TIGR02146 226 TPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRT----YEFLPPEV 301 (344)
T ss_pred ccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCccc----CCCCCHHH
Confidence 2345666666666666555677788999999999999999999999999999999999999999875 88999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q 006969 424 RHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSD 471 (623)
Q Consensus 424 ~~~i~~~l~~lG~~l~~~~~~~~~~~iK~lad~~~~v~d~dl~~L~~~ 471 (623)
.+++++++...|.. ...+. ..+++ .+-.++++++..++..
T Consensus 302 ~g~~~~~~~~~~~g--~~~~~---~~~~~---~~~~~~~~~~~~~~~~ 341 (344)
T TIGR02146 302 FGRKRHILIARLTG--KHAIK---ARKEK---LGVKLIEEELKRVTAK 341 (344)
T ss_pred cCCcceEeeecccc--HHHHH---HHHHH---cCCCCCHHHHHHHHHH
Confidence 99988887665532 22222 12222 2445788888877654
No 49
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.72 E-value=1.2e-16 Score=174.83 Aligned_cols=265 Identities=22% Similarity=0.258 Sum_probs=203.0
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhH--cCCCEEEEecCCCC---------hhHHHHHHHHHHHhccccc
Q 006969 78 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAK--LGVDIIEAGFPAAS---------KEDFEAVRTIAKEVGNAVD 145 (623)
Q Consensus 78 ~~v~I~DtTLRDG~Q~~-g~~~t~e~Kl~Ia~~L~~--~Gvd~IEvGfP~~s---------~~d~e~v~~i~~~~~~~~~ 145 (623)
....|+|||.||..|+. ..+..+-+-..|+..-.. .|.-..|. |.++. +--|+.++++.+.++|-+.
T Consensus 558 ~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~-WGGATFDVamRFLhEcPWeRL~~lRkliPNIPF 636 (1176)
T KOG0369|consen 558 PGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLEN-WGGATFDVAMRFLHECPWERLRELRKLIPNIPF 636 (1176)
T ss_pred CCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhh-cCCchhhHHHHHHhcChHHHHHHHHHhCCCCcH
Confidence 34679999999999997 456677777777766544 35555555 43322 2238899999988766433
Q ss_pred cCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---eEE
Q 006969 146 AESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DVE 222 (623)
Q Consensus 146 ~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~---~V~ 222 (623)
+..-..++-.+++....+-|..-.|..+..|.+.+.+|.+..++ .++.-.++.+++.|.- .++
T Consensus 637 QmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~l--------------pnl~lGmeAagkAGGVVEAai~ 702 (1176)
T KOG0369|consen 637 QMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNYL--------------PNLLLGMEAAGKAGGVVEAAIC 702 (1176)
T ss_pred HHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhhh--------------hhhhhhHhhhhccCCeEEEEEe
Confidence 32111234455665555556555555566799999999887653 3344455667777752 245
Q ss_pred Eccc--CCC--CCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH
Q 006969 223 FSPE--DAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298 (623)
Q Consensus 223 f~~e--da~--r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 298 (623)
|+.. |-+ +.+.+|++.+++.++++|..+++|.|..|.+.|+...-||..+|+++|+ +||.+|.|+..|-|||.
T Consensus 703 YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~Pd---lPiHvHtHDtsGagVAs 779 (1176)
T KOG0369|consen 703 YTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPD---LPIHVHTHDTSGAGVAS 779 (1176)
T ss_pred eccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCC---CceEEeccCCccHHHHH
Confidence 5331 333 4789999999999999999999999999999999999999999999995 78999999999999999
Q ss_pred HHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCC
Q 006969 299 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 366 (623)
Q Consensus 299 slaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~ 366 (623)
-+++.+|||+.||+.+..|.+=+...++-.+++.|+.. -++|+++++.+.+.+.|.++.-..
T Consensus 780 Mlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt------~~Dt~l~~~~v~eysaYWe~~R~L 841 (1176)
T KOG0369|consen 780 MLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGT------PLDTGLNLEHVREYSAYWEQMRLL 841 (1176)
T ss_pred HHHHHHcCCceeeeecccccccccCCchhhhhhhccCC------cccCCCchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999988877632 268999999999999999986443
No 50
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.44 E-value=6.1e-06 Score=91.44 Aligned_cols=169 Identities=22% Similarity=0.274 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccc---hhhHHHHHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN---ERDIKTAWEAV 172 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~---~~dI~~a~eal 172 (623)
-..+.++++++++.|.+.|++.||+|+|..+....+.++.|++..+. +.+....++. ..+++.++++
T Consensus 11 D~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~---------~~ii~D~kl~d~g~~~v~~a~~a- 80 (430)
T PRK07028 11 DLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPD---------HTIVADMKTMDTGAIEVEMAAKA- 80 (430)
T ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCC---------CEEEEEeeeccchHHHHHHHHHc-
Confidence 34689999999999999999999999986555667888888875321 2344443332 2366666664
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE---cccCCCCCCHHHHHHHHHHHHHcCCc
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SPEDAGRSDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f---~~eda~r~d~e~l~~~~~~~~~aGa~ 249 (623)
|.+.||+....++. .+.+.+++++++|.. +.+ +++ ++.+ .++.+.+.|++
T Consensus 81 ---GAdgV~v~g~~~~~---------------~~~~~i~~a~~~G~~-~~~g~~s~~----t~~e----~~~~a~~~GaD 133 (430)
T PRK07028 81 ---GADIVCILGLADDS---------------TIEDAVRAARKYGVR-LMADLINVP----DPVK----RAVELEELGVD 133 (430)
T ss_pred ---CCCEEEEecCCChH---------------HHHHHHHHHHHcCCE-EEEEecCCC----CHHH----HHHHHHhcCCC
Confidence 89999987544321 134678899999975 554 332 2222 35667788999
Q ss_pred EEeecCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 250 TLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 250 ~I~l~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.|.+. .|. ..+....+.++.+++.++ +||.+|+ |....|...++++||+.|=
T Consensus 134 ~I~~~--pg~~~~~~~~~~~~~l~~l~~~~~----iPI~a~G----GI~~~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 134 YINVH--VGIDQQMLGKDPLELLKEVSEEVS----IPIAVAG----GLDAETAAKAVAAGADIVI 188 (430)
T ss_pred EEEEE--eccchhhcCCChHHHHHHHHhhCC----CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence 99765 232 122233457777776653 6788888 9999999999999999864
No 51
>PLN02591 tryptophan synthase
Probab=97.96 E-value=0.00077 Score=69.49 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhccccccCCCccc-eEE
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~-~i~ 155 (623)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++++++.. . +| .+.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~--------~-~p~ilm 84 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQL--------S-CPIVLF 84 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC--------C-CCEEEE
Confidence 577889999999999999999999987652 1 22222222110 1 13 233
Q ss_pred eecccc-hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEc-ccCCCCCCH
Q 006969 156 GLSRCN-ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS-PEDAGRSDR 233 (623)
Q Consensus 156 ~~~r~~-~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~-~eda~r~d~ 233 (623)
++.... .-++++-++.++++|++.+-+.. .. ++...+..++++++|++.|.+- | .++.
T Consensus 85 ~Y~N~i~~~G~~~F~~~~~~aGv~GviipD------------LP----~ee~~~~~~~~~~~gl~~I~lv~P----tt~~ 144 (250)
T PLN02591 85 TYYNPILKRGIDKFMATIKEAGVHGLVVPD------------LP----LEETEALRAEAAKNGIELVLLTTP----TTPT 144 (250)
T ss_pred ecccHHHHhHHHHHHHHHHHcCCCEEEeCC------------CC----HHHHHHHHHHHHHcCCeEEEEeCC----CCCH
Confidence 332221 23777777878888998876541 22 3556688899999999765553 4 3556
Q ss_pred HHHHHHHHHHHHcC-CcEEeecCcccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 234 KFLYEILGEVIKVG-ATTLNIPDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 234 e~l~~~~~~~~~aG-a~~I~l~DTvG~--~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+.+..+++.. -| ...|...-+.|. ..|.++.++++.+|+.. +. .+.+||-.++ -.++-.....|||.|
T Consensus 145 ~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~-Pv~vGFGI~~-----~e~v~~~~~~GADGv 215 (250)
T PLN02591 145 ERMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DK-PVAVGFGISK-----PEHAKQIAGWGADGV 215 (250)
T ss_pred HHHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CC-ceEEeCCCCC-----HHHHHHHHhcCCCEE
Confidence 6666666542 12 223334556665 45899999999999964 32 1444443333 346667778889875
No 52
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.96 E-value=0.001 Score=68.82 Aligned_cols=174 Identities=20% Similarity=0.283 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhccccccCCCccceEEe
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVPVICG 156 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~~i~~ 156 (623)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+++... . .|.+ .
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-------~-~plv-~ 92 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-------N-IPIG-L 92 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------C-CCEE-E
Confidence 677889999999999999999999987652 1 233344433200 0 1222 2
Q ss_pred ecccch---hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccCCCCCC
Q 006969 157 LSRCNE---RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSD 232 (623)
Q Consensus 157 ~~r~~~---~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~~eda~r~d 232 (623)
++=.++ -++++-++.++.+|++.|-+..- -.+...+.++.++++|++.+.+ +| .++
T Consensus 93 m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl----------------p~ee~~~~~~~~~~~gl~~i~lv~P----~T~ 152 (256)
T TIGR00262 93 LTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL----------------PLEESGDLVEAAKKHGVKPIFLVAP----NAD 152 (256)
T ss_pred EEeccHHhhhhHHHHHHHHHHcCCCEEEECCC----------------ChHHHHHHHHHHHHCCCcEEEEECC----CCC
Confidence 222232 25555566666778887665321 1244667889999999875433 54 356
Q ss_pred HHHHHHHHHHHHHcC-CcEEeecCccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 006969 233 RKFLYEILGEVIKVG-ATTLNIPDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (623)
Q Consensus 233 ~e~l~~~~~~~~~aG-a~~I~l~DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 309 (623)
.+.+..+++.+ .| .-.+....+.|.. .+.++.++++.+|+..+. .+.+++..++ -.++-.+.++||+.
T Consensus 153 ~eri~~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~--pi~vgfGI~~-----~e~~~~~~~~GADg 223 (256)
T TIGR00262 153 DERLKQIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK--PVLVGFGISK-----PEQVKQAIDAGADG 223 (256)
T ss_pred HHHHHHHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC--CEEEeCCCCC-----HHHHHHHHHcCCCE
Confidence 67776666642 22 2233445667763 567799999999997642 2555544443 45777888999987
Q ss_pred E
Q 006969 310 V 310 (623)
Q Consensus 310 V 310 (623)
|
T Consensus 224 v 224 (256)
T TIGR00262 224 V 224 (256)
T ss_pred E
Confidence 5
No 53
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=97.95 E-value=0.0012 Score=70.11 Aligned_cols=221 Identities=20% Similarity=0.131 Sum_probs=133.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH-HHHHHHHHHHhccccccCCCccceEEeecccc--------hhh
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCN--------ERD 164 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~--------~~d 164 (623)
.++.|+.++.++...+.|++.|-+.. |....+. .+.++.|.+... ...++++++.. -..
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~---------~i~~~~~s~~e~~~~~~~~g~~ 105 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFP---------DVHIHAFSPMEVYFLAKNEGLS 105 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCC---------CceEEecCHHHHHHHHHHcCCC
Confidence 48999999999999999999888753 3211111 245555554321 12455555421 011
Q ss_pred HHHHHHHHhcCCCCEEE-EEecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHH
Q 006969 165 IKTAWEAVKYAKRPRIH-TFIATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEIL 240 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~-i~~~~Sd~h~~~~l---~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~ 240 (623)
.+..++.++++|.++++ .-.-+.+-.+.+++ +.+.++. .++++.|++.|++ +..+..-+-.-+++...+.+
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~----l~~i~~a~~~Gi~-~~s~~iiG~~Et~ed~~~~l 180 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEW----LEVIKTAHRLGIP-TTATMMFGHVENPEHRVEHL 180 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCC-ceeeEEecCCCCHHHHHHHH
Confidence 24556778889998874 22222222233333 2355444 4788999999987 44333333335677777888
Q ss_pred HHHHHcCCcEEe----e------cCcc-------cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 006969 241 GEVIKVGATTLN----I------PDTV-------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (623)
Q Consensus 241 ~~~~~aGa~~I~----l------~DTv-------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 303 (623)
..+.+.+.+... + .+|- ...+|.+..++|+..|=-+|.+..+..++ +.+|.-. ...++
T Consensus 181 ~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~---~~l~~~~--~~~~l 255 (309)
T TIGR00423 181 LRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW---VKLGLKL--AQVAL 255 (309)
T ss_pred HHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc---hhcCHHH--HHHHH
Confidence 888887765321 2 2552 23678999999999988888654455554 4455332 47889
Q ss_pred HhCCCEEEeccCC-----c-cCccC-cccHHHHHHHHHhc
Q 006969 304 CAGARQVEVTING-----I-GERAG-NASLEEVVMAFKCR 336 (623)
Q Consensus 304 ~aGA~~Vd~Tv~G-----l-GERaG-Na~lEevv~~L~~~ 336 (623)
.+||+-+++|+.. . |...+ ..++++++..++..
T Consensus 256 ~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~ 295 (309)
T TIGR00423 256 EFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDA 295 (309)
T ss_pred hCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHc
Confidence 9999999988732 1 11112 24567776666654
No 54
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=97.88 E-value=0.00088 Score=72.43 Aligned_cols=223 Identities=11% Similarity=0.035 Sum_probs=134.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHH----HHHHHHHHHhccccccCCCccceEEeecccc--------hhh
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRCN--------ERD 164 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~--------~~d 164 (623)
.++.|+.++.++...+.|++.|-+.+......++ +.++.|.+..++ ..+++++... -..
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~---------i~i~~~~~~ei~~~~~~~g~~ 148 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD---------LHVKAFTAVEIHHFSKISGLP 148 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC---------ceEEeCCHHHHHHHHHHcCCC
Confidence 4899999999999999999988775421111123 455555543211 2344443210 011
Q ss_pred HHHHHHHHhcCCCCEEEEE-ecC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHH
Q 006969 165 IKTAWEAVKYAKRPRIHTF-IAT-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 242 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~i~-~~~-Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~ 242 (623)
.+..++.|+++|.++++-. .-+ ++- +..++.++. ...++..+.++.|+++|++ ++-...-+---+++..++.+..
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~-v~~~i~~~~-~~~~~~l~~i~~a~~~Gi~-~~sg~i~GlgEt~edrv~~l~~ 225 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEE-VRQQICPEK-ISAERWLEIHRTAHELGLK-TNATMLYGHIETPAHRVDHMLR 225 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHH-HHhhcCCCC-CCHHHHHHHHHHHHHcCCC-cceEEEeeCCCCHHHHHHHHHH
Confidence 2344667888899887521 111 222 222333321 1234555789999999987 4333333334566777788888
Q ss_pred HHHcCCcE------Eee----cCcc------cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 006969 243 VIKVGATT------LNI----PDTV------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 243 ~~~aGa~~------I~l----~DTv------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 306 (623)
+.+.+.+. |-+ .+|- ...+|.+..+++...|=-+|++.+++..+=.- |. ..+..++.+|
T Consensus 226 Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w~~~---~~--~~~~~~L~~G 300 (351)
T TIGR03700 226 LRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYWVML---GL--KLAQVALAFG 300 (351)
T ss_pred HHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccccc---CH--HHHHHHHhcC
Confidence 88877643 333 2553 45788999999999888787655555543322 43 3568999999
Q ss_pred CCEEEeccCC--------ccCccCcccHHHHHHHHHhcc
Q 006969 307 ARQVEVTING--------IGERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 307 A~~Vd~Tv~G--------lGERaGNa~lEevv~~L~~~~ 337 (623)
|+-+.+|+.. -.++. ..+++++...++..|
T Consensus 301 and~ggt~~~e~v~~~~g~~~~~-~~~~~~l~~~i~~~g 338 (351)
T TIGR03700 301 VNDLDGTVVEEKIGHDAGAKSPQ-ALSKDELVRLIRDAG 338 (351)
T ss_pred CCCCCccCccceeeccccCCCCC-CCCHHHHHHHHHHcC
Confidence 9999888763 22222 356677777776543
No 55
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.88 E-value=0.00053 Score=71.23 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhccccccCCCccc-eEE
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~-~i~ 155 (623)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++++++.. . .| .+.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~--------~-~p~vlm 97 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEI--------K-APIVIF 97 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC--------C-CCEEEE
Confidence 678889999999999999999999987652 1 22233332210 1 13 233
Q ss_pred eecccc-hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccCCCCCCH
Q 006969 156 GLSRCN-ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDR 233 (623)
Q Consensus 156 ~~~r~~-~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~~eda~r~d~ 233 (623)
++.... .-++++-++..+.+|++.|-+..= . ++...+..+.++++|+..|.+ +| -++.
T Consensus 98 ~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL------------P----~ee~~~~~~~~~~~gi~~I~lv~P----tT~~ 157 (263)
T CHL00200 98 TYYNPVLHYGINKFIKKISQAGVKGLIIPDL------------P----YEESDYLISVCNLYNIELILLIAP----TSSK 157 (263)
T ss_pred ecccHHHHhCHHHHHHHHHHcCCeEEEecCC------------C----HHHHHHHHHHHHHcCCCEEEEECC----CCCH
Confidence 332211 236777666667789988765321 1 244667889999999986555 44 3566
Q ss_pred HHHHHHHHHHHHcC-CcEEeecCcccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH-HHHHHHHHHhCCCE
Q 006969 234 KFLYEILGEVIKVG-ATTLNIPDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGACAGARQ 309 (623)
Q Consensus 234 e~l~~~~~~~~~aG-a~~I~l~DTvG~--~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlA-vANslaAv~aGA~~ 309 (623)
+.+..+++.+. | +..+..+=+.|. ..|.++.++++.+|++.. .||.+ ++|-. -.++-....+|||.
T Consensus 158 eri~~i~~~a~--gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~----~Pi~v----GFGI~~~e~~~~~~~~GADG 227 (263)
T CHL00200 158 SRIQKIARAAP--GCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN----KPIIL----GFGISTSEQIKQIKGWNING 227 (263)
T ss_pred HHHHHHHHhCC--CcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC----CCEEE----ECCcCCHHHHHHHHhcCCCE
Confidence 77766665431 2 233344667776 568889999999999763 45554 46666 33555667788987
Q ss_pred E
Q 006969 310 V 310 (623)
Q Consensus 310 V 310 (623)
|
T Consensus 228 v 228 (263)
T CHL00200 228 I 228 (263)
T ss_pred E
Confidence 5
No 56
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=97.84 E-value=0.0014 Score=70.48 Aligned_cols=221 Identities=18% Similarity=0.104 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe---cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeeccc--------chhh
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG---FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRC--------NERD 164 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG---fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~--------~~~d 164 (623)
.++.++.++.++.+.+.|++.|-+. .|....+.+ +.++.|.+.... ..+.++++. +--.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~---------i~~~~~s~~ei~~~~~~~g~~ 141 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPH---------IHIHSFSPVEIVYIAKKEGLS 141 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC---------cCCCCCCHHHHHHHhccCCCC
Confidence 4799999999999999999999884 343222222 455666553211 111112111 0001
Q ss_pred HHHHHHHHhcCCCCEEEEE--ecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHH
Q 006969 165 IKTAWEAVKYAKRPRIHTF--IATSGIHMEHKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEIL 240 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~i~--~~~Sd~h~~~~l--~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~ 240 (623)
.+..++.++++|+++++-. -..++-..+... +.|.++. .++++.+++.|++ +..+..-+-.-+++...+.+
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~----l~~i~~a~~~Gi~-v~~~~iiGlgEt~ed~~~~l 216 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEW----LEVMETAHKLGLP-TTATMMFGHVETLEDRIEHL 216 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCC-ccceeEeeCCCCHHHHHHHH
Confidence 1445677888899887521 113333332222 2355544 6789999999986 44333333345667778888
Q ss_pred HHHHHcCCcEEe----ec------Ccc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 006969 241 GEVIKVGATTLN----IP------DTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 241 ~~~~~aGa~~I~----l~------DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 306 (623)
..+.+.+.+.+. +| +|- ...+|.+..++|+..|-.+|+...+.-++ ..+|. .....|+.+|
T Consensus 217 ~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~---~~~g~--~~~~~~l~~G 291 (340)
T TIGR03699 217 ERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW---VTQGK--EVGQLALHFG 291 (340)
T ss_pred HHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc---cccCh--HHHHHHHhcC
Confidence 888888876522 22 432 34678999999999998888643333333 22333 3457799999
Q ss_pred CCEEEeccC--CccCccCccc---HHHHHHHHHhc
Q 006969 307 ARQVEVTIN--GIGERAGNAS---LEEVVMAFKCR 336 (623)
Q Consensus 307 A~~Vd~Tv~--GlGERaGNa~---lEevv~~L~~~ 336 (623)
|+-+++|+. ++-..+|... +++++..++..
T Consensus 292 an~~~g~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 326 (340)
T TIGR03699 292 ANDFGSTMLEENVVAAAGATHRASREEIIRIIREA 326 (340)
T ss_pred CccCCCccccccccccCCCCCCCCHHHHHHHHHHc
Confidence 999998875 3333444433 56666666653
No 57
>PRK08445 hypothetical protein; Provisional
Probab=97.77 E-value=0.0033 Score=68.00 Aligned_cols=221 Identities=15% Similarity=0.073 Sum_probs=132.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEe--cCCCChhH--HHHHHHHHHHhccccccCCCccceEEeecccchh--------
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAG--FPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-------- 163 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~-------- 163 (623)
..++.++.++.++.+.+.|.+.|=+- -+..-+.+ .+.++.|.+..+. ..++++++....
T Consensus 71 y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~---------i~~~a~s~~ei~~~a~~~~~ 141 (348)
T PRK08445 71 YILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPT---------ITIHGFSAVEIDYIAKISKI 141 (348)
T ss_pred eeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC---------cEEEEccHHHHHHHHHHhCC
Confidence 35799999999999999999866432 12111212 2444455443211 244554432111
Q ss_pred hHHHHHHHHhcCCCCEEE-E-EecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHH
Q 006969 164 DIKTAWEAVKYAKRPRIH-T-FIATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 164 dI~~a~eal~~a~~~~v~-i-~~~~Sd~h~~~~l---~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~ 238 (623)
..+..++.|+++|+++++ . .=..+| .....+ ++|.++. .+.++.|+++|++ ++-+...+..-+++...+
T Consensus 142 ~~~e~L~~LkeAGl~~~~g~glE~~~d-~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~-~~sg~i~G~~Et~edr~~ 215 (348)
T PRK08445 142 SIKEVLERLQAKGLSSIPGAGAEILSD-RVRDIIAPKKLDSDRW----LEVHRQAHLIGMK-STATMMFGTVENDEEIIE 215 (348)
T ss_pred CHHHHHHHHHHcCCCCCCCCceeeCCH-HHHHhhCCCCCCHHHH----HHHHHHHHHcCCe-eeeEEEecCCCCHHHHHH
Confidence 124567788999999884 5 333344 333444 6677665 4799999999997 443332233345566666
Q ss_pred HHHHHHHcCCcE-----E-----eecCcc--------cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 006969 239 ILGEVIKVGATT-----L-----NIPDTV--------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (623)
Q Consensus 239 ~~~~~~~aGa~~-----I-----~l~DTv--------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsl 300 (623)
.+..+.+.+.+. + .-++|- ..++|.+.-++++..|=-+|+..+++-++. .+|..+ +.
T Consensus 216 ~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~~---~~g~~~--~~ 290 (348)
T PRK08445 216 HWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSWV---TQGSYI--GQ 290 (348)
T ss_pred HHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCCc---ccCHHH--HH
Confidence 666666654432 1 223432 247889999999888887887545666662 456655 47
Q ss_pred HHHHhCCCEEEeccCCc------cCccCcccHHHHHHHHHhcc
Q 006969 301 AGACAGARQVEVTINGI------GERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 301 aAv~aGA~~Vd~Tv~Gl------GERaGNa~lEevv~~L~~~~ 337 (623)
.|+.+||+-+++|+..= |...| .+.++++..++..|
T Consensus 291 ~~L~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g 332 (348)
T PRK08445 291 LALLFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIG 332 (348)
T ss_pred HHHhcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcC
Confidence 88999999999999641 11222 34566665555543
No 58
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.75 E-value=0.0029 Score=68.18 Aligned_cols=220 Identities=17% Similarity=0.124 Sum_probs=130.1
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEe---cCCCChhH-HHHHHHHHHHhccccccCCCccceEEeecccc------hhh-
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAG---FPAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCN------ERD- 164 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvG---fP~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~------~~d- 164 (623)
..++.|+.++.++.+.+.|++.|=+. .|....+. .+.++.|.+.... ..++++++.. ..+
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~---------i~~~~~t~~ei~~~~~~~g~ 138 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG---------MHIHAFSPMEVYYGARNSGL 138 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC---------ceEEecCHHHHHHHHHHcCC
Confidence 35899999999999999999988774 23221111 2455555543210 2344433210 011
Q ss_pred -HHHHHHHHhcCCCCEEEEEecCCHHH---HHHHhCC---CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHH
Q 006969 165 -IKTAWEAVKYAKRPRIHTFIATSGIH---MEHKLRK---TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 237 (623)
Q Consensus 165 -I~~a~eal~~a~~~~v~i~~~~Sd~h---~~~~l~~---t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~ 237 (623)
.+..++.|+++|.++++ ....+.. +.+++.. +.++ ..+.++.++++|++ ++-+..-+..-+.+...
T Consensus 139 ~~~e~l~~LkeAGl~~i~--~~~~E~~~~~v~~~i~~~~~~~~~----~~~~i~~a~~~Gi~-v~s~~i~G~~Et~ed~~ 211 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSMP--GTAAEILDDEVRKVICPDKLSTAE----WIEIIKTAHKLGIP-TTATIMYGHVETPEHWV 211 (343)
T ss_pred CHHHHHHHHHHhCccccc--CcchhhcCHHHHHhcCCCCCCHHH----HHHHHHHHHHcCCc-ccceEEEecCCCHHHHH
Confidence 24456678888999876 1122222 2223332 4443 46799999999996 43222222234557777
Q ss_pred HHHHHHHHcCCcE------Eeec----Ccc--------cccCHHHHHHHHHHHHHhCCCC-cceeEEEeecCCcchHHHH
Q 006969 238 EILGEVIKVGATT------LNIP----DTV--------GITMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLSTAN 298 (623)
Q Consensus 238 ~~~~~~~~aGa~~------I~l~----DTv--------G~~~P~~v~~li~~l~~~~~~~-~~v~i~~H~HND~GlAvAN 298 (623)
+.+..+.+.+.+. |-++ .|- ..+.|.++-++|+..|=-+|+. ..+.-++ ..+|.. -
T Consensus 212 ~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~---~~l~~~--~ 286 (343)
T TIGR03551 212 DHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW---VKLGKK--L 286 (343)
T ss_pred HHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc---cccCHH--H
Confidence 8887777777653 3222 332 2357899999999999888863 2455555 244443 3
Q ss_pred HHHHHHhCCCEEEeccCC------ccCccC-cccHHHHHHHHHhc
Q 006969 299 TIAGACAGARQVEVTING------IGERAG-NASLEEVVMAFKCR 336 (623)
Q Consensus 299 slaAv~aGA~~Vd~Tv~G------lGERaG-Na~lEevv~~L~~~ 336 (623)
...++.+||+-+++|+.. -|...+ ..++++++..++..
T Consensus 287 ~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~ 331 (343)
T TIGR03551 287 AQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDA 331 (343)
T ss_pred HHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHc
Confidence 478899999999998754 122222 23566776666654
No 59
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.70 E-value=0.0018 Score=67.20 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhccccccCCCccc-eEE
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~-~i~ 155 (623)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+++. . . . .| .+.
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~---~-~---~-~p~vlm 95 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREK---D-P---T-IPIVLM 95 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---C-C---C-CCEEEE
Confidence 677889999999999999999999987652 1 2333333311 1 0 0 12 222
Q ss_pred eecccc-hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHH
Q 006969 156 GLSRCN-ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (623)
Q Consensus 156 ~~~r~~-~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e 234 (623)
++.-.. .-++++-++.++++|++.+.+. | .. ++.+.+.++.++++|++.|.|... .++.+
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGvdGviip----D--------Lp----~ee~~~~~~~~~~~gl~~I~lvap---~t~~e 156 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGVDGLIIP----D--------LP----PEEAEELRAAAKKHGLDLIFLVAP---TTTDE 156 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCCcEEEEC----C--------CC----HHHHHHHHHHHHHcCCcEEEEeCC---CCCHH
Confidence 322222 2377777888888899988773 1 22 355678899999999987765432 34556
Q ss_pred HHHHHHHHHHHcCCcEEeec---Ccccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecC
Q 006969 235 FLYEILGEVIKVGATTLNIP---DTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQN 290 (623)
Q Consensus 235 ~l~~~~~~~~~aGa~~I~l~---DTvG~--~~P~~v~~li~~l~~~~~~~~~v~i~~H~HN 290 (623)
.+..+++. ...-|++. =++|. ..|..+.++++.+++..+ . .+.+++..+|
T Consensus 157 ri~~i~~~----s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~-~-pv~vGfGI~~ 211 (258)
T PRK13111 157 RLKKIASH----ASGFVYYVSRAGVTGARSADAADLAELVARLKAHTD-L-PVAVGFGIST 211 (258)
T ss_pred HHHHHHHh----CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCC-C-cEEEEcccCC
Confidence 55554443 33345543 34454 467789999999999653 2 2555554444
No 60
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.32 E-value=0.025 Score=61.74 Aligned_cols=220 Identities=21% Similarity=0.152 Sum_probs=132.5
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH--HHHHHHHHHHhccccccCCCccceEEeecc--------cch
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSR--------CNE 162 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r--------~~~ 162 (623)
..++.|+.++.++.+.+.|+..|-+.. |...+-| .+.++.+.+..+. ..+++++. ..-
T Consensus 89 y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~---------i~i~a~s~~ei~~~~~~~G 159 (371)
T PRK07360 89 FWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD---------IHLHAFSPMEVYFAAREDG 159 (371)
T ss_pred eeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC---------cceeeCCHHHHHHHHhhcC
Confidence 458999999999999999999998853 3222111 2444444442110 23444321 000
Q ss_pred hhHHHHHHHHhcCCCCEEEEEecCCH-H---HHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHH
Q 006969 163 RDIKTAWEAVKYAKRPRIHTFIATSG-I---HMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKF 235 (623)
Q Consensus 163 ~dI~~a~eal~~a~~~~v~i~~~~Sd-~---h~~~~l---~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~ 235 (623)
.-.+..++.|+++|+++++ -++. + .+.+++ ++|.++. .+.++.|+++|++ ++-+..-+---+++.
T Consensus 160 ~~~~e~l~~LkeAGld~~~---~t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~-~~sg~i~G~gEt~ed 231 (371)
T PRK07360 160 LSYEEVLKALKDAGLDSMP---GTAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLP-TTSTMMYGHVETPEH 231 (371)
T ss_pred CCHHHHHHHHHHcCCCcCC---CcchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCC-ceeeEEeeCCCCHHH
Confidence 1113456778889999885 2222 1 122222 2354443 5789999999997 433222233356788
Q ss_pred HHHHHHHHHHcCCcE------Eeec----Cc-----cc---ccCHHHHHHHHHHHHHhCCC-CcceeEEEeecCCcchHH
Q 006969 236 LYEILGEVIKVGATT------LNIP----DT-----VG---ITMPTEFGKLIADIKANTPG-IENVVISTHCQNDLGLST 296 (623)
Q Consensus 236 l~~~~~~~~~aGa~~------I~l~----DT-----vG---~~~P~~v~~li~~l~~~~~~-~~~v~i~~H~HND~GlAv 296 (623)
.++.+..+.+.+.+. |-++ +| .. ...|.+.-++|+..|=-+|+ ...++-++ +.+|..
T Consensus 232 rv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~---~~lg~~- 307 (371)
T PRK07360 232 RIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW---VKLGLK- 307 (371)
T ss_pred HHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc---eeeCHH-
Confidence 888888888887765 3322 33 21 14788888899988888886 22344444 234433
Q ss_pred HHHHHHHHhCCCEEEeccCC------ccCccC-cccHHHHHHHHHhcc
Q 006969 297 ANTIAGACAGARQVEVTING------IGERAG-NASLEEVVMAFKCRG 337 (623)
Q Consensus 297 ANslaAv~aGA~~Vd~Tv~G------lGERaG-Na~lEevv~~L~~~~ 337 (623)
-...++.+||+-+.+|+.+ -|.... ..+++++...++..|
T Consensus 308 -~~~~~l~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G 354 (371)
T PRK07360 308 -LAQVALNCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIG 354 (371)
T ss_pred -HHHHHHhcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcC
Confidence 3566899999999888765 233332 257788877777654
No 61
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.26 E-value=0.035 Score=57.01 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChh-H-------H---------HHHHHHHHHhccccccCCCccceE-Eeecc
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKE-D-------F---------EAVRTIAKEVGNAVDAESGYVPVI-CGLSR 159 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d-------~---------e~v~~i~~~~~~~~~~~~~l~~~i-~~~~r 159 (623)
-+.++-.++++.|++. +|.||+|+|.+.|. | . +.++.+++.. . .|.+ .+...
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~--------~-~Pl~lM~y~n 84 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDV--------S-VPIILMTYLE 84 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccC--------C-CCEEEEEecc
Confidence 3778889999999998 99999999877662 1 0 2233332211 0 1321 11111
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEcccCCCCCCHHHHHH
Q 006969 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 160 ~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~-V~f~~eda~r~d~e~l~~ 238 (623)
....+.+.-++.++.+|++.|.+..-. . |..+...+.+++++++|++. +.++| .++.+.+..
T Consensus 85 ~~~~~~~~~i~~~~~~Gadgvii~dlp----~---------e~~~~~~~~~~~~~~~Gl~~~~~v~p----~T~~e~l~~ 147 (244)
T PRK13125 85 DYVDSLDNFLNMARDVGADGVLFPDLL----I---------DYPDDLEKYVEIIKNKGLKPVFFTSP----KFPDLLIHR 147 (244)
T ss_pred hhhhCHHHHHHHHHHcCCCEEEECCCC----C---------CcHHHHHHHHHHHHHcCCCEEEEECC----CCCHHHHHH
Confidence 113355555566667799987763211 0 11234567889999999974 23466 366776666
Q ss_pred HHHHHHHcCCcEEee--cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch-HHHHHHHHHHhCCCEE
Q 006969 239 ILGEVIKVGATTLNI--PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGARQV 310 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l--~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANslaAv~aGA~~V 310 (623)
+++. ....+++ --..|...+..+.+.++.+|+..+. .+|. -|.|. .-.+.-..+++||+.+
T Consensus 148 ~~~~----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~---~~i~----v~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 148 LSKL----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGN---KYLV----VGFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred HHHh----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCC---CCEE----EeCCcCCHHHHHHHHHcCCCEE
Confidence 6553 2233322 1223667788899999999998753 2333 24555 3455566679999876
No 62
>PRK08444 hypothetical protein; Provisional
Probab=97.25 E-value=0.022 Score=61.76 Aligned_cols=222 Identities=16% Similarity=0.141 Sum_probs=133.2
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHH----HHHHHHHHHhccccccCCCccceEEeecccc--------hh
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRCN--------ER 163 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~--------~~ 163 (623)
..|+.|+.++.++.+.+.|++.|=+-.....+.++ +.++.|.+..+ + ..+++|+..- -.
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p----~-----i~i~a~s~~Ei~~~a~~~g~ 148 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYP----N-----LHVKAMTAAEVDFLSRKFGK 148 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCC----C-----ceEeeCCHHHHHHHHHHcCC
Confidence 46899999999999999999988774321111133 44555554321 1 3566654321 12
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHHH---HHHHhC--CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHH
Q 006969 164 DIKTAWEAVKYAKRPRIHTFIATSGIH---MEHKLR--KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 164 dI~~a~eal~~a~~~~v~i~~~~Sd~h---~~~~l~--~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~ 238 (623)
.++..++.|+++|.++++- ..-++. +..++- ++. -++..+..+.|+++|++ ++-+...+.--+++..++
T Consensus 149 ~~~e~l~~LkeAGl~~~~g--~~aEi~~~~vr~~I~p~k~~---~~~~~~i~~~a~~~Gi~-~~sg~l~G~gEt~edrv~ 222 (353)
T PRK08444 149 SYEEVLEDMLEYGVDSMPG--GGAEIFDEEVRKKICKGKVS---SERWLEIHKYWHKKGKM-SNATMLFGHIENREHRID 222 (353)
T ss_pred CHHHHHHHHHHhCcccCCC--CCchhcCHHHHhhhCCCCCC---HHHHHHHHHHHHHcCCC-ccceeEEecCCCHHHHHH
Confidence 3445667788889987642 222222 222221 222 23444677889999986 433333343456677777
Q ss_pred HHHHHHHcCCcE------Eee----cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 006969 239 ILGEVIKVGATT------LNI----PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (623)
Q Consensus 239 ~~~~~~~aGa~~------I~l----~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 304 (623)
.+..+.+...+. |-+ +.| ....+|.+.-+++...|=-+|++++++-.| --++..-+..|+.
T Consensus 223 hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i~ni~a~w-----~~~g~~~~q~~L~ 297 (353)
T PRK08444 223 HMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNIPHIKAYW-----ATLTLNLALVAQE 297 (353)
T ss_pred HHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc-----ccCcHHHHHHHHh
Confidence 777777776543 223 344 234788999999988887777543333222 1245778899999
Q ss_pred hCCCEEEeccCC--ccCccC-----cccHHHHHHHHHhcc
Q 006969 305 AGARQVEVTING--IGERAG-----NASLEEVVMAFKCRG 337 (623)
Q Consensus 305 aGA~~Vd~Tv~G--lGERaG-----Na~lEevv~~L~~~~ 337 (623)
+||+-+++|+.. +---+| ..+.+++...++..|
T Consensus 298 ~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g 337 (353)
T PRK08444 298 FGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSG 337 (353)
T ss_pred cCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcC
Confidence 999999999743 111223 456677776666543
No 63
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.22 E-value=0.0088 Score=62.03 Aligned_cols=174 Identities=25% Similarity=0.341 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhccccccCCCccc-eEE
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~-~i~ 155 (623)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+.+.-.+ .| .+.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~--------~pivlm 93 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPD--------IPIVLM 93 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTS--------SEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCC--------CCEEEE
Confidence 578889999999999999999999987652 1 2334444421111 12 222
Q ss_pred eeccc-chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccCCCCCCH
Q 006969 156 GLSRC-NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDR 233 (623)
Q Consensus 156 ~~~r~-~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~~eda~r~d~ 233 (623)
++.-. -..++++-++.++++|++.+-+.. -+ . +...+..+.++++|+..|.| +| .++.
T Consensus 94 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIipD--LP----------~----ee~~~~~~~~~~~gl~~I~lv~p----~t~~ 153 (259)
T PF00290_consen 94 TYYNPIFQYGIERFFKEAKEAGVDGLIIPD--LP----------P----EESEELREAAKKHGLDLIPLVAP----TTPE 153 (259)
T ss_dssp E-HHHHHHH-HHHHHHHHHHHTEEEEEETT--SB----------G----GGHHHHHHHHHHTT-EEEEEEET----TS-H
T ss_pred eeccHHhccchHHHHHHHHHcCCCEEEEcC--CC----------h----HHHHHHHHHHHHcCCeEEEEECC----CCCH
Confidence 22211 124566666666667887765532 11 1 22345667788999876655 44 4666
Q ss_pred HHHHHHHHHHHHcC-CcEEeecCccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 234 KFLYEILGEVIKVG-ATTLNIPDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 234 e~l~~~~~~~~~aG-a~~I~l~DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+.+.++++... | +..+...-++|.- .|.++.++++.+|+... . .+.+| +|-...--...+..|||.|
T Consensus 154 ~Ri~~i~~~a~--gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~-~-Pv~vG------FGI~~~e~~~~~~~~aDGv 223 (259)
T PF00290_consen 154 ERIKKIAKQAS--GFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTD-L-PVAVG------FGISTPEQAKKLAAGADGV 223 (259)
T ss_dssp HHHHHHHHH-S--SEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTS-S--EEEE------SSS-SHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCC--cEEEeeccCCCCCCcccchHHHHHHHHHHHhhcC-c-ceEEe------cCCCCHHHHHHHHccCCEE
Confidence 77766665432 2 2233345556654 57899999999999873 2 14444 4444445556666888876
No 64
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.21 E-value=0.01 Score=61.44 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhccccccCCCccc-eEE
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~-~i~ 155 (623)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+.+.- .. +| .+.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~-~~-------~Pivlm 100 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKG-VK-------VPIVLM 100 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CC-------CCEEEE
Confidence 678889999999999999999999977651 1 23333333220 11 12 222
Q ss_pred eecc-cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHH
Q 006969 156 GLSR-CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (623)
Q Consensus 156 ~~~r-~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e 234 (623)
++.- --..+++.-++.++++|++.+-+.. -+ ++...+..++++++|++.|.+.+- -++.+
T Consensus 101 ~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD--LP--------------~ee~~~~~~~~~~~gi~~I~lvaP---tt~~~ 161 (265)
T COG0159 101 TYYNPIFNYGIEKFLRRAKEAGVDGLLVPD--LP--------------PEESDELLKAAEKHGIDPIFLVAP---TTPDE 161 (265)
T ss_pred EeccHHHHhhHHHHHHHHHHcCCCEEEeCC--CC--------------hHHHHHHHHHHHHcCCcEEEEeCC---CCCHH
Confidence 2221 1235677766667778998875532 11 234456778888999986666442 45556
Q ss_pred HHHHHHHHHHHcC-CcEEeecCcccccCH--HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 235 FLYEILGEVIKVG-ATTLNIPDTVGITMP--TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 235 ~l~~~~~~~~~aG-a~~I~l~DTvG~~~P--~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.+.++++... | ...+...=++|.-.| ..+.++|+.+|+... +|+. -|.|+.+.-.+-+.+.- -|
T Consensus 162 rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~----~Pv~------vGFGIs~~e~~~~v~~~-AD 228 (265)
T COG0159 162 RLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYTD----VPVL------VGFGISSPEQAAQVAEA-AD 228 (265)
T ss_pred HHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhcC----CCeE------EecCcCCHHHHHHHHHh-CC
Confidence 6666655321 3 344555567777777 338999999998763 4555 35555555444444333 44
Q ss_pred eccCC
Q 006969 312 VTING 316 (623)
Q Consensus 312 ~Tv~G 316 (623)
+-|-|
T Consensus 229 GVIVG 233 (265)
T COG0159 229 GVIVG 233 (265)
T ss_pred eEEEc
Confidence 44555
No 65
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.03 E-value=0.032 Score=55.04 Aligned_cols=168 Identities=22% Similarity=0.220 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHH-HHHHhcCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA-WEAVKYAK 176 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a-~eal~~a~ 176 (623)
.+.++-+++++.|.+. ++.||+|+|...+.-++.++.+.+...+ .+.+..+.-... ... ++.+..+|
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~--------~~i~~~~~v~~~---~~~~~~~~~~aG 77 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPD--------KIIVADLKTADA---GALEAEMAFKAG 77 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCC--------CEEEEEEEeccc---cHHHHHHHHhcC
Confidence 5788999999999999 9999999886443336778877765221 133333222222 111 23344569
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE---EcccCCCCCCHHHHHHHHHHHHHcCCcEEee
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE---FSPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~---f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
.+.|.+.....+ +.+.+.+++++++|++ +. .++ .+++.+. + +...|++.+.+
T Consensus 78 ad~i~~h~~~~~---------------~~~~~~i~~~~~~g~~-~~v~~~~~-----~t~~e~~---~-~~~~~~d~v~~ 132 (202)
T cd04726 78 ADIVTVLGAAPL---------------STIKKAVKAAKKYGKE-VQVDLIGV-----EDPEKRA---K-LLKLGVDIVIL 132 (202)
T ss_pred CCEEEEEeeCCH---------------HHHHHHHHHHHHcCCe-EEEEEeCC-----CCHHHHH---H-HHHCCCCEEEE
Confidence 988776543321 2345678889999986 43 344 3444443 2 55679998877
Q ss_pred -cCcccccC-HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 254 -PDTVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 254 -~DTvG~~~-P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+-..+... +....+.++.+++. ++ +++.+= .|-...|...++++||+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~i~~~~~~-~~---~~i~~~----GGI~~~~i~~~~~~Gad~v 183 (202)
T cd04726 133 HRGIDAQAAGGWWPEDDLKKVKKL-LG---VKVAVA----GGITPDTLPEFKKAGADIV 183 (202)
T ss_pred cCcccccccCCCCCHHHHHHHHhh-cC---CCEEEE----CCcCHHHHHHHHhcCCCEE
Confidence 32111111 22334555555543 22 344443 3555678999999999976
No 66
>PRK05926 hypothetical protein; Provisional
Probab=96.99 E-value=0.034 Score=60.66 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=122.8
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChh-HH----HHHHHHHHHhccccccCCCccceEEeecc--------cc
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-DF----EAVRTIAKEVGNAVDAESGYVPVICGLSR--------CN 161 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r--------~~ 161 (623)
...++.|+.++.++.. +.|++.|=+-. +-.|. ++ +.++.|.+..+. ..+++++- ..
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~---------i~i~a~s~~Ei~~~~~~~ 164 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPITETHIVA-GCFPSCNLAYYEELFSKIKQNFPD---------LHIKALTAIEYAYLSKLD 164 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCC---------eeEEECCHHHHHHHHhhc
Confidence 4568999999999998 79999876643 12222 33 444445443211 13444321 11
Q ss_pred hhhHHHHHHHHhcCCCCEEEEE-e-cCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHH
Q 006969 162 ERDIKTAWEAVKYAKRPRIHTF-I-ATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (623)
Q Consensus 162 ~~dI~~a~eal~~a~~~~v~i~-~-~~Sd~h~~~~l---~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l 236 (623)
....+..++.++++|.++++-- . ..++. +..++ ++|.++ -.++++.|++.|++ ++-....+.--+++..
T Consensus 165 ~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~-~r~~~~p~~~t~~e----~l~~i~~a~~~Gi~-~~sgmi~G~gEt~edr 238 (370)
T PRK05926 165 NLPVKEVLQTLKIAGLDSIPGGGAEILVDE-IRETLAPGRLSSQG----FLEIHKTAHSLGIP-SNATMLCYHRETPEDI 238 (370)
T ss_pred CCCHHHHHHHHHHcCcCccCCCCchhcCHH-HHHhhCCCCCCHHH----HHHHHHHHHHcCCc-ccCceEEeCCCCHHHH
Confidence 1233556778888999887632 1 11222 22222 335444 35689999999997 4444334445677888
Q ss_pred HHHHHHHHHcCCcEEee----------cCcc--------cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH
Q 006969 237 YEILGEVIKVGATTLNI----------PDTV--------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l----------~DTv--------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 298 (623)
++.+..+.+.+.+.+.+ .+|- +..++.+.-++++..|=-+++++++..+| +.+ |..-
T Consensus 239 v~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~~~--G~~~ 313 (370)
T PRK05926 239 VTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---NYL--GIEV 313 (370)
T ss_pred HHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---hhc--CHHH
Confidence 88888888887654322 1332 13567777777766665566655677777 333 4557
Q ss_pred HHHHHHhCCCEEEeccCC
Q 006969 299 TIAGACAGARQVEVTING 316 (623)
Q Consensus 299 slaAv~aGA~~Vd~Tv~G 316 (623)
+..|+.+||+-+++|+..
T Consensus 314 ~q~~L~~GanD~ggt~~~ 331 (370)
T PRK05926 314 ALHLLSCGANDLSSTHQG 331 (370)
T ss_pred HHHHHhCCCccCcccccc
Confidence 788999999999999975
No 67
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.99 E-value=0.023 Score=56.41 Aligned_cols=170 Identities=20% Similarity=0.203 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchh--hHHHHHHHHhcC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER--DIKTAWEAVKYA 175 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~--dI~~a~eal~~a 175 (623)
++.++-+++++.| +-|++.||+|+|-..+.-.+.++.+++..++. ..++.+--.... +++.+ ..+
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~--------~i~~d~k~~d~~~~~~~~~----~~~ 75 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDR--------KVLADLKTMDAGEYEAEQA----FAA 75 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCC--------EEEEEEeeccchHHHHHHH----HHc
Confidence 5789999999999 88999999998765554567788887753211 122222111111 34444 445
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeec-
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP- 254 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~- 254 (623)
|.+.|.+..-+.+ ..+.+.+++++++|+. +..... +..+ ..+.++.+.+.|++.+.+.
T Consensus 76 Gad~i~vh~~~~~---------------~~~~~~i~~~~~~g~~-~~~~~~--~~~t---~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 76 GADIVTVLGVADD---------------ATIKGAVKAAKKHGKE-VQVDLI--NVKD---KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred CCCEEEEeccCCH---------------HHHHHHHHHHHHcCCE-EEEEec--CCCC---hHHHHHHHHHcCCCEEEEcC
Confidence 8887765432221 2345678889999985 432210 1111 2233444567799998774
Q ss_pred ----CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 255 ----DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 255 ----DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
++.+... -+.++.+++.++. .+|.+ +-|--.-|.-..+++||+.|-+
T Consensus 135 g~~~~~~~~~~----~~~i~~l~~~~~~---~~i~v----~GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 135 GLDEQAKGQNP----FEDLQTILKLVKE---ARVAV----AGGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcCcccCCCCC----HHHHHHHHHhcCC---CcEEE----ECCcCHHHHHHHHHcCCCEEEE
Confidence 1222222 2345566665553 22322 2455567888889999997743
No 68
>PRK07094 biotin synthase; Provisional
Probab=96.92 E-value=0.11 Score=55.34 Aligned_cols=196 Identities=20% Similarity=0.134 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH-HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
.++.++.++.++.+.+.|++.|-+.. |....++ .+.++.|.+.. ++...+. .+...++ .++.+
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~--------~l~i~~~-~g~~~~e----~l~~L 135 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKEL--------DVAITLS-LGERSYE----EYKAW 135 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccC--------CceEEEe-cCCCCHH----HHHHH
Confidence 46999999999999999999988742 2222222 23444443321 1111111 1111222 34557
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC-CCCHHHHHHHHHHHHHcCCcEE
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~-r~d~e~l~~~~~~~~~aGa~~I 251 (623)
+.+|.+++.+-+-+.+-.+..++++. ...+...+.++.+++.|+. |..+..-+. .-+.+.+.+.++.+.+.+++.+
T Consensus 136 k~aG~~~v~~glEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~Gi~-v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v 212 (323)
T PRK07094 136 KEAGADRYLLRHETADKELYAKLHPG--MSFENRIACLKDLKELGYE-VGSGFMVGLPGQTLEDLADDILFLKELDLDMI 212 (323)
T ss_pred HHcCCCEEEeccccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCe-ecceEEEECCCCCHHHHHHHHHHHHhCCCCee
Confidence 77899999876655543444455542 2345667789999999985 443332222 3466888899999999998865
Q ss_pred ee------cCcc----cccCHHHHHHHHHHHHHhCCCCcceeE--EEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 006969 252 NI------PDTV----GITMPTEFGKLIADIKANTPGIENVVI--STHCQNDLGLSTANTIAGACAGARQVEVTI 314 (623)
Q Consensus 252 ~l------~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i--~~H~HND~GlAvANslaAv~aGA~~Vd~Tv 314 (623)
.+ +.|- ....++++.++++.+|..+|+.. ++. ++-++...| ...++.+||+.+=.++
T Consensus 213 ~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~-i~~~~~~~~~~~~~-----~~~~l~~Gan~~~~~~ 281 (323)
T PRK07094 213 GIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDAN-IPATTALGTLNPDG-----REKGLKAGANVVMPNL 281 (323)
T ss_pred eeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCC-CcccCCccccCchh-----HHHHHHcCCceecCCC
Confidence 43 2322 23467888999999999888532 322 444443333 2489999998774433
No 69
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.89 E-value=0.22 Score=48.28 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccc----hhhHHHHHHHHhc
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN----ERDIKTAWEAVKY 174 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~----~~dI~~a~eal~~ 174 (623)
+.+.-.++++.|.+.|++.|++.. +.++.+.+..... .+|.+++.+-.. .++.-...+..+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~------~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGS------DVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCC------CCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 788889999999999999999964 4566666553220 234555554433 2332222233455
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccCCCCCCHHHHHHHHHHHHHcCCcEEee
Q 006969 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 175 a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~~eda~r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
+|++.+.+..+. . .....+.++.++.+.+.++.+ +.++..+.+ .|. .+ .+++.+.++++.+.+.|++.|-
T Consensus 77 ~Gad~i~v~~~~---~--~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~-~~-~~~~~~~~~~~~~~~~g~~~iK- 147 (201)
T cd00945 77 LGADEIDVVINI---G--SLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETR-GL-KTADEIAKAARIAAEAGADFIK- 147 (201)
T ss_pred cCCCEEEEeccH---H--HHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECC-CC-CCHHHHHHHHHHHHHhCCCEEE-
Confidence 688887765432 1 111112566677666666665 456652233 332 22 4788888888888888988764
Q ss_pred cCccccc----CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 254 PDTVGIT----MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 254 ~DTvG~~----~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
++.|.. ....+.++++.+ +. ++++.+-+-.+ ...+...++.+||+.+
T Consensus 148 -~~~~~~~~~~~~~~~~~i~~~~----~~--~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 148 -TSTGFGGGGATVEDVKLMKEAV----GG--RVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred -eCCCCCCCCCCHHHHHHHHHhc----cc--CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 666643 556555554443 21 12344444333 2567788888898875
No 70
>PLN02389 biotin synthase
Probab=96.87 E-value=0.15 Score=55.95 Aligned_cols=194 Identities=17% Similarity=0.154 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe--c-CCCC-hhHHHHHHHHHHHhccccccCCCccceEEe-ecccchhhHHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG--F-PAAS-KEDFEAVRTIAKEVGNAVDAESGYVPVICG-LSRCNERDIKTAWEA 171 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG--f-P~~s-~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-~~r~~~~dI~~a~ea 171 (623)
.++.++.++.++.+.+.|++.|-++ + .... |.+++.+..+.+.+... + +.++. .+-.. +..++.
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~-----~--l~i~~s~G~l~----~E~l~~ 183 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM-----G--MEVCCTLGMLE----KEQAAQ 183 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC-----C--cEEEECCCCCC----HHHHHH
Confidence 5899999999999999999998775 1 1122 23455555555544321 2 22331 11122 234556
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc--CC
Q 006969 172 VKYAKRPRIHTFIATSGIHMEHKL-RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV--GA 248 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h~~~~l-~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a--Ga 248 (623)
|+++|++++++.+-+++-+..... +.+ .+...+.++.+++.|++ |+.+..-+---+++...+.+..+.+. .+
T Consensus 184 LkeAGld~~~~~LeTs~~~y~~i~~~~s----~e~rl~ti~~a~~~Gi~-v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~ 258 (379)
T PLN02389 184 LKEAGLTAYNHNLDTSREYYPNVITTRS----YDDRLETLEAVREAGIS-VCSGGIIGLGEAEEDRVGLLHTLATLPEHP 258 (379)
T ss_pred HHHcCCCEEEeeecCChHHhCCcCCCCC----HHHHHHHHHHHHHcCCe-EeEEEEECCCCCHHHHHHHHHHHHhcccCC
Confidence 788899999998877763332221 233 55566788999999986 54433323334566777777777777 45
Q ss_pred cEEee------cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 249 TTLNI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 249 ~~I~l------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+.|.| +.| ....+|+++.++|...|-.+|+.. +.+..-. .-++.-....|+.+||+-+
T Consensus 259 ~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~-i~i~~gr---~~l~~~~~~~~l~~GAN~~ 326 (379)
T PLN02389 259 ESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAM-VRLSAGR---VRFSMAEQALCFLAGANSI 326 (379)
T ss_pred cEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCcc-ccccccc---cccChhHHHHHHHhCCCEE
Confidence 65553 355 235788999999999998887531 2222111 1122334688999999876
No 71
>PRK15108 biotin synthase; Provisional
Probab=96.84 E-value=0.39 Score=51.99 Aligned_cols=219 Identities=14% Similarity=0.081 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCCh--hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASK--EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~--~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 175 (623)
++.++.++.++.+.+.|++.|=+|.-...| .+++.+..+.+.++.. ++ ..+..++... +..++.|+++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~-----~i-~v~~s~G~ls----~e~l~~LkeA 145 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM-----GL-ETCMTLGTLS----ESQAQRLANA 145 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhC-----CC-EEEEeCCcCC----HHHHHHHHHc
Confidence 788999999999999999999775221122 3455555555544321 22 2222233222 3445667888
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc--CCcEEee
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV--GATTLNI 253 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a--Ga~~I~l 253 (623)
|++++++.+-+++-+-. ++.. ...++.-.+.++.+++.|+. ++.+..-+---.++..++.+..+.+. ..+.|.+
T Consensus 146 Gld~~n~~leT~p~~f~-~I~~--~~~~~~rl~~i~~a~~~G~~-v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~ 221 (345)
T PRK15108 146 GLDYYNHNLDTSPEFYG-NIIT--TRTYQERLDTLEKVRDAGIK-VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPI 221 (345)
T ss_pred CCCEEeeccccChHhcC-CCCC--CCCHHHHHHHHHHHHHcCCc-eeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEe
Confidence 99999999888764333 2211 12456666788999999985 55433333334667788888888888 3444432
Q ss_pred ------cCc-c---cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCC-ccCccC
Q 006969 254 ------PDT-V---GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING-IGERAG 322 (623)
Q Consensus 254 ------~DT-v---G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~G-lGERaG 322 (623)
+.| . ..+.|.+..++|..+|=-+|+.. +.+..-. ...| --....|+.+||+-+ -+.+ +=...|
T Consensus 222 ~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~-i~i~~g~-~~~~--~~~~~~~l~~Gan~~--~~g~~~ltt~g 295 (345)
T PRK15108 222 NMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSY-VRLSAGR-EQMN--EQTQAMCFMAGANSI--FYGCKLLTTPN 295 (345)
T ss_pred CCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCce-eeecccH-hHhC--hhhHHHHHHcCCcEE--EECCccccCCC
Confidence 355 2 23678999999999998888521 3333222 1111 124689999999988 2222 112334
Q ss_pred cccHHHHHHHHHhcc
Q 006969 323 NASLEEVVMAFKCRG 337 (623)
Q Consensus 323 Na~lEevv~~L~~~~ 337 (623)
.+.++.+..++..|
T Consensus 296 -~~~~~~~~~i~~~g 309 (345)
T PRK15108 296 -PEEDKDLQLFRKLG 309 (345)
T ss_pred -CCHHHHHHHHHHcC
Confidence 57788888888754
No 72
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.74 E-value=0.068 Score=54.87 Aligned_cols=175 Identities=22% Similarity=0.288 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-HHHHHHH-----------------HHHHhccccccCCCccceEEeeccc
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-DFEAVRT-----------------IAKEVGNAVDAESGYVPVICGLSRC 160 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d~e~v~~-----------------i~~~~~~~~~~~~~l~~~i~~~~r~ 160 (623)
+.+.-.++++.|.+.|+|.||+|+|.+.|- |-.+++. +.+.+.+.. -.|.+ .++-.
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-----~~pv~-lm~y~ 85 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-----TIPIV-LMGYY 85 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-----CCCEE-EEEec
Confidence 457788999999999999999999987663 2222221 122222110 01311 21211
Q ss_pred c---hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccCCCCCCHHHH
Q 006969 161 N---ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFL 236 (623)
Q Consensus 161 ~---~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~~eda~r~d~e~l 236 (623)
+ ..+++.-++.++.+|++.+.+. |+|. +...+.++.+|++|++.+.+ +| .++.+.+
T Consensus 86 n~~~~~G~~~fi~~~~~aG~~giiip----Dl~~------------ee~~~~~~~~~~~g~~~i~~i~P----~T~~~~i 145 (242)
T cd04724 86 NPILQYGLERFLRDAKEAGVDGLIIP----DLPP------------EEAEEFREAAKEYGLDLIFLVAP----TTPDERI 145 (242)
T ss_pred CHHHHhCHHHHHHHHHHCCCcEEEEC----CCCH------------HHHHHHHHHHHHcCCcEEEEeCC----CCCHHHH
Confidence 2 2235555666667788877653 3332 34668889999999975543 55 3555655
Q ss_pred HHHHHHHHHcC-CcEEeecCcccccC--HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH-HHHHHHHhCCCEE
Q 006969 237 YEILGEVIKVG-ATTLNIPDTVGITM--PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA-NTIAGACAGARQV 310 (623)
Q Consensus 237 ~~~~~~~~~aG-a~~I~l~DTvG~~~--P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA-NslaAv~aGA~~V 310 (623)
..+++.. .| +..+...-+.|.-+ +..+.+.++.+|+.. + ++|.+ +.|.-.. |+-..+++ |+.+
T Consensus 146 ~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~---~pI~v----ggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 146 KKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-D---LPIAV----GFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred HHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-C---CcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence 5544321 12 12233345565543 577889999999863 2 44554 4555544 66666666 7764
No 73
>PRK06256 biotin synthase; Validated
Probab=96.60 E-value=0.37 Score=51.60 Aligned_cols=211 Identities=18% Similarity=0.135 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE---ecCCCChhHHHHHHHHHHHhccccccCCCccceEEe-ecccchhhHHHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA---GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-LSRCNERDIKTAWEAV 172 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv---GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-~~r~~~~dI~~a~eal 172 (623)
.++.++.++.++.+.+.|+..+-+ |++.. ..+++.+..+.+.+... . .+ .+++ .+...++. ++.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~-~~~~~~~~e~i~~i~~~-~---~i--~~~~~~g~l~~e~----l~~L 158 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPS-GKEVDQVVEAVKAIKEE-T---DL--EICACLGLLTEEQ----AERL 158 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC-chHHHHHHHHHHHHHhc-C---CC--cEEecCCcCCHHH----HHHH
Confidence 379999999999999999976654 33211 12233333333322211 0 11 1222 12223333 3456
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~ 252 (623)
+++|++++++.+-+++-. ..+++.+. ..+...++++.+++.|+. |..+..-+..-+.+...+.++.+.+.+++.+.
T Consensus 159 keaG~~~v~~~lEts~~~-~~~i~~~~--t~~~~i~~i~~a~~~Gi~-v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~ 234 (336)
T PRK06256 159 KEAGVDRYNHNLETSRSY-FPNVVTTH--TYEDRIDTCEMVKAAGIE-PCSGGIIGMGESLEDRVEHAFFLKELDADSIP 234 (336)
T ss_pred HHhCCCEEecCCccCHHH-HhhcCCCC--CHHHHHHHHHHHHHcCCe-eccCeEEeCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 777999998866666643 34455432 345667789999999985 54333222345677888899999999998766
Q ss_pred e------cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHH-HHHHHhCCCEEEeccCCccCcc
Q 006969 253 I------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANT-IAGACAGARQVEVTINGIGERA 321 (623)
Q Consensus 253 l------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANs-laAv~aGA~~Vd~Tv~GlGERa 321 (623)
+ +.| .....|.++.+++..+|-.+|... +.+. .+--. .+.+. -.++ +||+.+= ++++=...
T Consensus 235 i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~-I~~~--~gr~~--~~~~~~~~~~-~g~~~~~--~g~~lt~~ 306 (336)
T PRK06256 235 INFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKE-IRIA--GGREV--NLRSLQPLGL-GGANSVI--VGNYLTTV 306 (336)
T ss_pred ecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCe-eEec--Cchhh--hchhhHHHHh-ccCceee--ECCcccCC
Confidence 5 444 234678999999999998888642 4444 32211 11222 2233 6876642 12222345
Q ss_pred CcccHHHHH
Q 006969 322 GNASLEEVV 330 (623)
Q Consensus 322 GNa~lEevv 330 (623)
|+..-+++-
T Consensus 307 g~~~~~d~~ 315 (336)
T PRK06256 307 GQPATADLD 315 (336)
T ss_pred CCChHHHHH
Confidence 665555544
No 74
>PRK05927 hypothetical protein; Provisional
Probab=96.60 E-value=0.074 Score=57.67 Aligned_cols=208 Identities=15% Similarity=0.107 Sum_probs=115.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHH----HHHHHHHHHhccccccCCCccc-eEEeecccchhhHHHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF----EAVRTIAKEVGNAVDAESGYVP-VICGLSRCNERDIKTAWE 170 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~----e~v~~i~~~~~~~~~~~~~l~~-~i~~~~r~~~~dI~~a~e 170 (623)
..++.++.++.++...+.|+..|=+........++ +.++.|.+..+. +.- ..+.+ .|.-+++..-.-.+..++
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~-l~~-~~~s~~ei~~~~~~~G~~~~e~l~ 151 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPS-LHP-HFFSAVEIAHAAQVSGISTEQALE 151 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCC-Ccc-cCCCHHHHHHHHHhcCCCHHHHHH
Confidence 46899999999999999999987774321111234 444555443211 000 01111 111111111112344566
Q ss_pred HHhcCCCCEEEE-EecCCHHHHHHHhC--C-CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc
Q 006969 171 AVKYAKRPRIHT-FIATSGIHMEHKLR--K-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 171 al~~a~~~~v~i-~~~~Sd~h~~~~l~--~-t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a 246 (623)
.|+++|++.++= -.-+++-+..+++. + +.++-+ +.++.|+++|++ ++-+...+.--+++..++.+..+.+.
T Consensus 152 ~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl----~~i~~A~~lGi~-~~sg~l~G~gEt~e~ri~~l~~Lr~l 226 (350)
T PRK05927 152 RLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWI----QFHKLAHRLGFR-STATMMFGHVESPEDILLHLQTLRDA 226 (350)
T ss_pred HHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHH----HHHHHHHHcCCC-cCceeEEeeCCCHHHHHHHHHHHHHh
Confidence 788889876541 22333334444432 2 445544 578999999986 32222222234455555666555555
Q ss_pred CCcE--Ee--ec------Ccc---c---ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 247 GATT--LN--IP------DTV---G---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 247 Ga~~--I~--l~------DTv---G---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+-+. |. || +|- . ..+|.++-++++..|--+|+... +. . --+.+|.--+..|+.+||+-+
T Consensus 227 qd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~--i~--~-~w~~~G~~~~q~~L~~GanDl 301 (350)
T PRK05927 227 QDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDH--IA--A-SWFGEGKEEGAKGLHYGADDF 301 (350)
T ss_pred hHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCc--cc--C-CccccCHHHHHHHHhCCCccc
Confidence 4211 11 34 452 1 48899999999999888875331 11 1 123355566779999999999
Q ss_pred EeccC
Q 006969 311 EVTIN 315 (623)
Q Consensus 311 d~Tv~ 315 (623)
.+|+.
T Consensus 302 ggt~~ 306 (350)
T PRK05927 302 GGTIL 306 (350)
T ss_pred cCCCc
Confidence 98873
No 75
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=96.59 E-value=0.78 Score=47.99 Aligned_cols=214 Identities=14% Similarity=0.065 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE---ecCCCChhH-HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA---GFPAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv---GfP~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
..+.++.++.++.+.+.|++.+-+ |++.. +.+ .+.++.+.+..... ++.. ....+...++ .++.+
T Consensus 61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~-~~~~~~~~~~i~~~~~~~-----~i~~-~~~~g~~~~e----~l~~L 129 (296)
T TIGR00433 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPK-DREFMEYVEAMVQIVEEM-----GLKT-CATLGLLDPE----QAKRL 129 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC-hHHHHHHHHHHHHHHHhC-----CCeE-EecCCCCCHH----HHHHH
Confidence 356788899999999999987533 44322 222 34555554432111 2211 1111222333 34557
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~ 252 (623)
+++|++.|.+.+-+++-.. .+++.. ..++...++++.+++.|+. |.....-+-..+.+.+.+.++.+.+.|++.+.
T Consensus 130 k~aG~~~v~i~~E~~~~~~-~~i~~~--~s~~~~~~ai~~l~~~Gi~-v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~ 205 (296)
T TIGR00433 130 KDAGLDYYNHNLDTSQEFY-SNIIST--HTYDDRVDTLENAKKAGLK-VCSGGIFGLGETVEDRIGLALALANLPPESVP 205 (296)
T ss_pred HHcCCCEEEEcccCCHHHH-hhccCC--CCHHHHHHHHHHHHHcCCE-EEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 7789999988766554322 333322 2355666788999999985 53322212233567888899999999988664
Q ss_pred e------cCcc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccC
Q 006969 253 I------PDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAG 322 (623)
Q Consensus 253 l------~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaG 322 (623)
+ +.|- ....++++.+++..++..+|... +.++ +=--.-+.---..-|+.+||+.+= ++|+=.-.|
T Consensus 206 l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~-i~~~--~~~~~~~~~~~~~~~l~~G~n~i~--~g~~~~~~g 280 (296)
T TIGR00433 206 INFLVKIKGTPLADNKELSADDALKTIALARIIMPKAE-IRLA--GGREVNMRELQQAMCFMAGANSIF--VGDYLTTTG 280 (296)
T ss_pred eeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcce-EEEe--CCcchhhhhhHHHHHHHhcCceEE--EcCcccCCC
Confidence 2 2441 23455788899999999998521 2221 111111121112348999999864 466655778
Q ss_pred cccH-HHHH
Q 006969 323 NASL-EEVV 330 (623)
Q Consensus 323 Na~l-Eevv 330 (623)
+..- |++-
T Consensus 281 ~~~~~~~~~ 289 (296)
T TIGR00433 281 NPEEDKDKK 289 (296)
T ss_pred CCCcHHHHH
Confidence 8777 5543
No 76
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.49 E-value=0.21 Score=50.48 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~ 178 (623)
+.++-+.+++.|.+.|++.||+.| .+|.-.+.++.+++..+... . ..|-+=+-.+.++.+.+.++ |.+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~--~~~~a~~~i~~l~~~~~~~p----~--~~vGaGTV~~~~~~~~a~~a----GA~ 90 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTY--TNPFASEVIKELVELYKDDP----E--VLIGAGTVLDAVTARLAILA----GAQ 90 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC--CCccHHHHHHHHHHHcCCCC----C--eEEeeeeCCCHHHHHHHHHc----CCC
Confidence 889999999999999999999988 36666788888887542100 0 12222334567888888776 665
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee--cCc
Q 006969 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PDT 256 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l--~DT 256 (623)
-+ +.|..+ .+.++++++.|+. +-| + -.++..+. .+.++|+|.|.+ +|.
T Consensus 91 Fi--vsP~~~------------------~~v~~~~~~~~i~---~iP--G-~~T~~E~~----~A~~~Gad~vklFPa~~ 140 (213)
T PRK06552 91 FI--VSPSFN------------------RETAKICNLYQIP---YLP--G-CMTVTEIV----TALEAGSEIVKLFPGST 140 (213)
T ss_pred EE--ECCCCC------------------HHHHHHHHHcCCC---EEC--C-cCCHHHHH----HHHHcCCCEEEECCccc
Confidence 43 223221 2578889999875 223 1 23444332 345799999998 354
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 257 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 257 vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.| |. .++.++..+|+ +++. -.-|.-..|.-.-+.+|++.+
T Consensus 141 ~G---~~----~ik~l~~~~p~---ip~~----atGGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 141 LG---PS----FIKAIKGPLPQ---VNVM----VTGGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred CC---HH----HHHHHhhhCCC---CEEE----EECCCCHHHHHHHHHCCCcEE
Confidence 44 44 46666777775 3443 235777899999999999876
No 77
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.37 E-value=0.3 Score=50.49 Aligned_cols=184 Identities=15% Similarity=0.196 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH-----HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
=|.++-+++|+.+.++|+.++=.|. |++||..| +-++.|.+..... |+ +.++- -....+++.+.+
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~-----Gl-~~~Te--v~d~~~v~~~~e 97 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEF-----GL-LSVSE--IMSERQLEEAYD 97 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHc-----CC-CEEEe--eCCHHHHHHHHh
Confidence 4789999999999999999999985 77877653 4455554432111 22 22221 124555555443
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
.++.+.| ++.+... .+.++++.+.|.. |.++- +.-.+++.+...++.+.+.|...
T Consensus 98 -----~vdilqI--gs~~~~n---------------~~LL~~va~tgkP-Vilk~--G~~~t~~e~~~A~e~i~~~Gn~~ 152 (250)
T PRK13397 98 -----YLDVIQV--GARNMQN---------------FEFLKTLSHIDKP-ILFKR--GLMATIEEYLGALSYLQDTGKSN 152 (250)
T ss_pred -----cCCEEEE--CcccccC---------------HHHHHHHHccCCe-EEEeC--CCCCCHHHHHHHHHHHHHcCCCe
Confidence 3566554 3322111 2455666667764 76642 33578888889999999999988
Q ss_pred EeecC--cccccCHHH-HH--HHHHHHHHhCCCCcceeEEE-eecCCcchHHHHHHHHHHhCCC--EEEeccCC
Q 006969 251 LNIPD--TVGITMPTE-FG--KLIADIKANTPGIENVVIST-HCQNDLGLSTANTIAGACAGAR--QVEVTING 316 (623)
Q Consensus 251 I~l~D--TvG~~~P~~-v~--~li~~l~~~~~~~~~v~i~~-H~HND~GlAvANslaAv~aGA~--~Vd~Tv~G 316 (623)
|.||- |.|+-+|.+ .- .-|..+++.+. . .+.++. |.=..+-+-.+-+++|+.+||+ .|+.-.+.
T Consensus 153 i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~-l-PVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P 224 (250)
T PRK13397 153 IILCERGVRGYDVETRNMLDIMAVPIIQQKTD-L-PIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDP 224 (250)
T ss_pred EEEEccccCCCCCccccccCHHHHHHHHHHhC-C-CeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCc
Confidence 99996 555544433 22 34667776552 1 122322 5533333455779999999999 88876664
No 78
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.27 E-value=0.12 Score=53.65 Aligned_cols=202 Identities=16% Similarity=0.121 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCC---------CChhHHHHHHHHHHHhccccccCCCccceEEe-------eccc
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPA---------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-------LSRC 160 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~---------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-------~~r~ 160 (623)
.++.++.++.+ .++|++.||+..+. .++.+.+.++.+.+..+-. ++.++. ++..
T Consensus 20 ~~~~~e~~~~~---~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~-------i~~~~~~~~~~~~~~~~ 89 (283)
T PRK13209 20 GECWLEKLAIA---KTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFR-------VNSMCLSAHRRFPLGSE 89 (283)
T ss_pred CCCHHHHHHHH---HHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCc-------eeEEecccccccCCCCC
Confidence 45777766555 57799999996432 1455566666665543221 111211 1111
Q ss_pred c-------hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc-CCCCCC
Q 006969 161 N-------ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSD 232 (623)
Q Consensus 161 ~-------~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e-da~r~d 232 (623)
. .+.++++++..+..|.+.|.+....... ........+...+.+.+.+++|+++|+. +.+-+. ...-.+
T Consensus 90 ~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i~iE~~~~~~~~~ 166 (283)
T PRK13209 90 DDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYY--EQANNETRRRFIDGLKESVELASRASVT-LAFEIMDTPFMNS 166 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeecCCcccCC
Confidence 1 1234556666677788887653211000 0000112234466677888899999974 555322 223346
Q ss_pred HHHHHHHHHHHHHcCCcEEeec-CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 233 RKFLYEILGEVIKVGATTLNIP-DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 233 ~e~l~~~~~~~~~aGa~~I~l~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
++.+.++++.+ +-..+.++ |+.=...-.. +....++. ..+ -...+|.+|..+- +-+.
T Consensus 167 ~~~~~~ll~~v---~~~~lgl~~D~~h~~~~~~--~~~~~i~~-~~~---~i~~vHikD~~~~-----------~~~~-- 224 (283)
T PRK13209 167 ISKALGYAHYL---NSPWFQLYPDIGNLSAWDN--DVQMELQA-GIG---HIVAFHVKDTKPG-----------VFKN-- 224 (283)
T ss_pred HHHHHHHHHHh---CCCccceEeccchHHHhcC--CHHHHHHh-CcC---cEEEEEeccCCCC-----------CCce--
Confidence 66666666654 43444443 5532211000 11223332 221 3578899886431 1111
Q ss_pred eccCCccCccCcccHHHHHHHHHhccc
Q 006969 312 VTINGIGERAGNASLEEVVMAFKCRGE 338 (623)
Q Consensus 312 ~Tv~GlGERaGNa~lEevv~~L~~~~~ 338 (623)
..+|+ |+.+..+++..|+..+.
T Consensus 225 ---~~~G~--G~id~~~i~~~L~~~gy 246 (283)
T PRK13209 225 ---VPFGE--GVVDFERCFKTLKQSGY 246 (283)
T ss_pred ---eCCCC--CccCHHHHHHHHHHcCC
Confidence 23344 88999999999998663
No 79
>PRK08508 biotin synthase; Provisional
Probab=96.24 E-value=0.41 Score=50.22 Aligned_cols=196 Identities=14% Similarity=0.025 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEe--cCCCChhHHHHHHHHHHHhccccccCCCccceE-EeecccchhhHHHHHHHHhc
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAG--FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI-CGLSRCNERDIKTAWEAVKY 174 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i-~~~~r~~~~dI~~a~eal~~ 174 (623)
+++|+.++.++...+.|+..|-+. .+..++.+++.+..+.+.+....+ + ..+ ...++..+ ..++.|++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p---~--l~i~~s~G~~~~----e~l~~Lk~ 110 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP---G--LHLIACNGTASV----EQLKELKK 110 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCC---C--cEEEecCCCCCH----HHHHHHHH
Confidence 699999999999999999887652 222233355555555544432111 1 122 23344443 34556777
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee-
Q 006969 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI- 253 (623)
Q Consensus 175 a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l- 253 (623)
+|.++++.-+-+++.+.. +...+ ..++...+.++.|++.|++ +.-...-+---+++.+.+.+..+.+.+++.|-+
T Consensus 111 aGld~~~~~lEt~~~~~~-~i~~~--~~~~~~l~~i~~a~~~Gi~-v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~ 186 (279)
T PRK08508 111 AGIFSYNHNLETSKEFFP-KICTT--HTWEERFQTCENAKEAGLG-LCSGGIFGLGESWEDRISFLKSLASLSPHSTPIN 186 (279)
T ss_pred cCCCEEcccccchHHHhc-CCCCC--CCHHHHHHHHHHHHHcCCe-ecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeC
Confidence 899999988888764432 22222 1234555677888999986 433332333456788889999999999884432
Q ss_pred -----cCcc---cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 254 -----PDTV---GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 254 -----~DTv---G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+.|- ..++|.++-++++..|-.+|+.. +.+.-=--..+|- .-..++.+||+.+
T Consensus 187 ~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~-i~~~~gr~~~~~~---~~~~~~~~g~n~~ 247 (279)
T PRK08508 187 FFIPNPALPLKAPTLSADEALEIVRLAKEALPNAR-LMVAGGREVVFGE---RQYEIFEAGANAI 247 (279)
T ss_pred CcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCce-eeecCChhhhchh---hHHHHHhcCCcce
Confidence 1331 23688999999999998888542 4443200000111 2356788898763
No 80
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=96.11 E-value=0.24 Score=53.00 Aligned_cols=226 Identities=14% Similarity=0.074 Sum_probs=120.3
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH-------------HHHHHHHHHHhccccccCCCccceEEeec
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED-------------FEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d-------------~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 158 (623)
...++.++.++.++.+.+.|++.|-+-+ |...-.+ .+.+..+.+.+... .++.+.+. ..
T Consensus 32 ~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e----~~~~~~~~-~g 106 (322)
T TIGR03550 32 AALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEE----TGLLPHTN-PG 106 (322)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----cCCccccC-CC
Confidence 4578999999999999999999876632 3221000 13333333322110 01112110 11
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHH
Q 006969 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRK--TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (623)
Q Consensus 159 r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~--t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l 236 (623)
-...+ .++.++.+|.. +++..-++.-.+....++ ++....+.-.+.++.|++.|+. +..+...+.--+++..
T Consensus 107 ~lt~e----~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~-~~s~~i~G~gEt~ed~ 180 (322)
T TIGR03550 107 VMSRD----ELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIP-FTTGILIGIGETREER 180 (322)
T ss_pred CCCHH----HHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCC-ccceeeEeCCCCHHHH
Confidence 11222 34455666754 354433332221111111 1111122346788999999986 4332222222345666
Q ss_pred HHHHHHHHHcC-----CcEEee------cCcc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 006969 237 YEILGEVIKVG-----ATTLNI------PDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (623)
Q Consensus 237 ~~~~~~~~~aG-----a~~I~l------~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 301 (623)
.+.+..+.+.+ ++.+.+ +.|- ...+|.+..++|+..|=-+|+..++..++ .+|.- -...
T Consensus 181 ~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~----~l~~~--~~~~ 254 (322)
T TIGR03550 181 AESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP----NLNRE--DYRL 254 (322)
T ss_pred HHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC----ccChH--HHHH
Confidence 66666655543 433221 2452 24678889898988888786544566665 23311 3678
Q ss_pred HHHhCCCEEEeccC---CccCccCc-ccHHHHHHHHHhcc
Q 006969 302 GACAGARQVEVTIN---GIGERAGN-ASLEEVVMAFKCRG 337 (623)
Q Consensus 302 Av~aGA~~Vd~Tv~---GlGERaGN-a~lEevv~~L~~~~ 337 (623)
|+.+||+-+++|+. ..|...|. .+.++++..++..|
T Consensus 255 ~L~~Gand~~gt~~~~~~~~~~~~~~~~~~~~~~~i~~~g 294 (322)
T TIGR03550 255 LLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAG 294 (322)
T ss_pred HHhcCCccccCcccCchhhcCCCCCCCCHHHHHHHHHHcC
Confidence 99999999999964 12222232 36788877777643
No 81
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=96.09 E-value=1.4 Score=49.63 Aligned_cols=207 Identities=17% Similarity=0.201 Sum_probs=116.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH--HHHHHHHHHHhccccccCCCccceEEe-ecccchhhHHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED--FEAVRTIAKEVGNAVDAESGYVPVICG-LSRCNERDIKTAW 169 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~-~~r~~~~dI~~a~ 169 (623)
..++.|+.++-++.+.+.|++.|=+-. |...+-| .+.++.|.+.... .+....+.. ++....++.
T Consensus 113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~-----~g~i~~v~inig~lt~eey---- 183 (469)
T PRK09613 113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHG-----NGEIRRVNVNIAPTTVENY---- 183 (469)
T ss_pred eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccc-----cCcceeeEEEeecCCHHHH----
Confidence 468999999999999999999886632 3222222 2444544432100 022111111 233334444
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEE----EcccCCCCCCHHHHHHHHHHH-
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVE----FSPEDAGRSDRKFLYEILGEV- 243 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~-t~ee~l~~~~~~v~~ak~~G~~~V~----f~~eda~r~d~e~l~~~~~~~- 243 (623)
+.|+++|++++.+|--|.+--.-.++.. -+....+.=.++++.|++.|++.|. |+.. .++.|.-.+..-++.+
T Consensus 184 ~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLg-e~~~E~~~l~~hl~~L~ 262 (469)
T PRK09613 184 KKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLY-DYKFEVLGLLMHAEHLE 262 (469)
T ss_pred HHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCC-CCHHHHHHHHHHHHHHH
Confidence 4577789999999988754322223321 1122344455688999999997554 4442 2333322222222222
Q ss_pred --HHcCCcEEeec------Cc-c----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 244 --IKVGATTLNIP------DT-V----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 244 --~~aGa~~I~l~------DT-v----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
...|++.|.++ +| . -...+.++.++|..+|=.+|... +.|+ ++-.-. +=+ ..+..|++++
T Consensus 263 ~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~-I~lS--tRE~~~--~r~--~~~~~gvt~~ 335 (469)
T PRK09613 263 ERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTG-MILS--TRESAE--LRR--EVLELGVSQI 335 (469)
T ss_pred HhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCC-ceee--cCCCHH--HHH--HHHhhcceee
Confidence 23367777765 54 2 23577899999999999898642 4444 555432 222 3456699998
Q ss_pred E----eccCCccC
Q 006969 311 E----VTINGIGE 319 (623)
Q Consensus 311 d----~Tv~GlGE 319 (623)
+ +.++|..+
T Consensus 336 sags~t~~ggy~~ 348 (469)
T PRK09613 336 SAGSRTGVGGYSE 348 (469)
T ss_pred cccccCCCCCcCC
Confidence 5 34455543
No 82
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=95.86 E-value=0.98 Score=48.45 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=116.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe--c-CCCC-------------hhHHHHHHHHHHHhccccccCCCccceEEeeccc
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG--F-PAAS-------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC 160 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG--f-P~~s-------------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 160 (623)
.+++|+.++.++.+.+.|+++|-+- - |... +.-.+.++.+.+..... ++.|.+.. .-.
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~-----g~~~~~~~-~~l 113 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEE-----GLLPHTNA-GIL 113 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhc-----CCCccccC-CCC
Confidence 7899999999999999999987773 2 3222 11134455544432110 23232111 111
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecC-CHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHH
Q 006969 161 NERDIKTAWEAVKYAKRPRIHTFIAT-SGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 161 ~~~dI~~a~eal~~a~~~~v~i~~~~-Sd~h~~~~l~~-t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~ 238 (623)
.++.++ .++.+++. +++..-+ ++...+ .++. .+....+...+.++.+++.|+. +..+...+.--+.+...+
T Consensus 114 t~e~i~----~Lk~ag~~-l~~~~et~~e~l~~-~v~~~~~~~~~~~~l~~i~~a~~~Gi~-~~~~~i~G~gEt~ed~~~ 186 (336)
T PRK06245 114 TREEME----KLKEVNAS-MGLMLEQTSPRLLN-TVHRGSPGKDPELRLETIENAGKLKIP-FTTGILIGIGETWEDRAE 186 (336)
T ss_pred CHHHHH----HHHHhCCC-CCCCccccchhhHH-hhccCCCCCCHHHHHHHHHHHHHcCCc-eeeeeeeECCCCHHHHHH
Confidence 233333 34444432 3443333 343332 2221 1111233456788999999986 332221111123344444
Q ss_pred HHHHHHHc-----CCcEEee------cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 006969 239 ILGEVIKV-----GATTLNI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (623)
Q Consensus 239 ~~~~~~~a-----Ga~~I~l------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 303 (623)
.+..+.+. |.+.+.+ +.| ....++.++.++++..|..+|+ .+.|..-. .+|.- -...++
T Consensus 187 ~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~--~i~i~~~~--~~~~~--~~~~~L 260 (336)
T PRK06245 187 SLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP--DISIQVPP--NLNRD--TGLLLL 260 (336)
T ss_pred HHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC--CceEecCC--ccchH--HHHHHH
Confidence 33333333 2444332 233 2245678999999999988864 23333221 44443 344669
Q ss_pred HhCCCEEEeccCCccC---ccC-cccHHHHHHHHHhcc
Q 006969 304 CAGARQVEVTINGIGE---RAG-NASLEEVVMAFKCRG 337 (623)
Q Consensus 304 ~aGA~~Vd~Tv~GlGE---RaG-Na~lEevv~~L~~~~ 337 (623)
.+||+-+.+|+..-|+ -.+ ..++++++..++..|
T Consensus 261 ~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 298 (336)
T PRK06245 261 DAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAG 298 (336)
T ss_pred hcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcC
Confidence 9999999999886555 111 246778777777654
No 83
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=95.76 E-value=1.4 Score=43.39 Aligned_cols=173 Identities=15% Similarity=0.121 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-----cCCCChhHHHHHHHHHHHhccccccCCCccceEE-eecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG-----fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~e 170 (623)
.+..+.-.+.++.|.+.|+|.||++ |-...+..++.++++.+.... +..+ .+.+. ...-++
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~---------~v~v~lm~~~----~~~~~~ 73 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDL---------PIDVHLMVEN----PDRYIE 73 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCC---------cEEEEeeeCC----HHHHHH
Confidence 3455667789999999999999997 522233456778888764211 2212 22222 222344
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
.++.+|.+.|.+..... +...+.++.++++|.. +.+... ..++.+.+.++ ..+++.
T Consensus 74 ~~~~~gadgv~vh~~~~----------------~~~~~~~~~~~~~g~~-~~~~~~--~~t~~e~~~~~-----~~~~d~ 129 (210)
T TIGR01163 74 DFAEAGADIITVHPEAS----------------EHIHRLLQLIKDLGAK-AGIVLN--PATPLEFLEYV-----LPDVDL 129 (210)
T ss_pred HHHHcCCCEEEEccCCc----------------hhHHHHHHHHHHcCCc-EEEEEC--CCCCHHHHHHH-----HhhCCE
Confidence 44566999876633211 1224566888888875 333221 12344444333 235777
Q ss_pred Eee----cCcccccCHHHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 251 LNI----PDTVGITMPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 251 I~l----~DTvG~~~P~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+.+ +-+.|-..++..-+.++.+++..+... ++++.+ +.|.-..|.-..++.||+.|
T Consensus 130 i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v----~GGI~~env~~l~~~gad~i 190 (210)
T TIGR01163 130 VLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEV----DGGVNDDNARELAEAGADIL 190 (210)
T ss_pred EEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHcCCCEE
Confidence 665 344453334444456666665432100 133433 34777788888899999976
No 84
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=95.70 E-value=0.81 Score=49.84 Aligned_cols=141 Identities=17% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecc-cchhhHHHHHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTAWEAV 172 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a~eal 172 (623)
..|+.++.+++++.+.+.|+..|.+ |=|-..++=.+.++.+.+. ++...|..=+- ..++ .++.+
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~---------g~~~~i~TNG~ll~~~----~~~~L 110 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHAREL---------GLYTNLITSGVGLTEA----RLAAL 110 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHc---------CCcEEEECCCccCCHH----HHHHH
Confidence 3588999999999999999987776 3365555433555554432 22122322111 1122 23445
Q ss_pred hcCCCCEEEEEecCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 173 KYAKRPRIHTFIATS--GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 173 ~~a~~~~v~i~~~~S--d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
+..|.+.|.+.+-.. +.|-.. -+.. ..++.+.+.++.+++.|+. |.+.. -.++.+.+.+.++++.+.+.|++.
T Consensus 111 ~~~g~~~v~iSldg~~~e~~d~i-rg~~--g~f~~~~~~i~~l~~~g~~-v~i~~-vv~~~N~~~i~~~~~~~~~lgv~~ 185 (378)
T PRK05301 111 KDAGLDHIQLSFQDSDPELNDRL-AGTK--GAFAKKLAVARLVKAHGYP-LTLNA-VIHRHNIDQIPRIIELAVELGADR 185 (378)
T ss_pred HHcCCCEEEEEecCCCHHHHHHH-cCCC--chHHHHHHHHHHHHHCCCc-eEEEE-EeecCCHHHHHHHHHHHHHcCCCE
Confidence 667888888876654 344321 1221 2456677788999999986 55544 245778899999999999999998
Q ss_pred Eeec
Q 006969 251 LNIP 254 (623)
Q Consensus 251 I~l~ 254 (623)
+.+.
T Consensus 186 i~~~ 189 (378)
T PRK05301 186 LELA 189 (378)
T ss_pred EEEe
Confidence 8764
No 85
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=95.67 E-value=0.21 Score=54.80 Aligned_cols=170 Identities=19% Similarity=0.127 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHH-HHHHhcCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA-WEAVKYAK 176 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a-~eal~~a~ 176 (623)
.+.++-+++++.|...++++||+|.|-.-..-.+.++.|.+...+. +.++-+ .-.|+... .+.+..+|
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~--------~I~~DL---K~~Di~~~vv~~~a~aG 250 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDA--------FIVADL---KTLDTGNLEARMAADAT 250 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCC--------eEEEEe---cccChhhHHHHHHHhcC
Confidence 5788999999999988888999998754333356788888752211 122222 22355444 45566679
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeec--
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP-- 254 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~-- 254 (623)
++.+.+.....+ +.+.++++.+|++|++ +..+.- ...+..+.+.+ + ..++|.|.+-
T Consensus 251 AD~vTVH~ea~~---------------~ti~~ai~~akk~Gik-vgVD~l-np~tp~e~i~~----l-~~~vD~Vllht~ 308 (391)
T PRK13307 251 ADAVVISGLAPI---------------STIEKAIHEAQKTGIY-SILDML-NVEDPVKLLES----L-KVKPDVVELHRG 308 (391)
T ss_pred CCEEEEeccCCH---------------HHHHHHHHHHHHcCCE-EEEEEc-CCCCHHHHHHH----h-hCCCCEEEEccc
Confidence 998877554432 3455788999999985 544321 11233343333 2 5588887665
Q ss_pred -CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 255 -DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 255 -DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
|+-+. +. .-+.|+.+++...+ ++|.+ |-|....|.-.++.+||+.+
T Consensus 309 vdp~~~--~~-~~~kI~~ikk~~~~---~~I~V----dGGI~~eti~~l~~aGADiv 355 (391)
T PRK13307 309 IDEEGT--EH-AWGNIKEIKKAGGK---ILVAV----AGGVRVENVEEALKAGADIL 355 (391)
T ss_pred cCCCcc--cc-hHHHHHHHHHhCCC---CcEEE----ECCcCHHHHHHHHHcCCCEE
Confidence 32222 22 22466777765332 33444 45888888889999999976
No 86
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.67 E-value=0.28 Score=49.53 Aligned_cols=151 Identities=25% Similarity=0.246 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-+.++-+++++.|.+.|++.||+++ .+|.-.+.++.+++..++. .|-+=+-.+.++.+.++++ |.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~~~~~~~I~~l~~~~p~~---------~IGAGTVl~~~~a~~a~~a----GA 88 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RTPAALEAIRLIAKEVPEA---------LIGAGTVLNPEQLAQAIEA----GA 88 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CCccHHHHHHHHHHHCCCC---------EEEEeeccCHHHHHHHHHc----CC
Confidence 5789999999999999999999996 4566677888888754321 1222223456777777775 77
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 257 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv 257 (623)
+-+.. |.. + .+.++++++.|+. +-|. -.+|. + +..+.++|++.+.+-
T Consensus 89 ~Fivs--P~~----------~--------~~vi~~a~~~~i~---~iPG---~~Tpt---E-i~~a~~~Ga~~vKlF--- 135 (212)
T PRK05718 89 QFIVS--PGL----------T--------PPLLKAAQEGPIP---LIPG---VSTPS---E-LMLGMELGLRTFKFF--- 135 (212)
T ss_pred CEEEC--CCC----------C--------HHHHHHHHHcCCC---EeCC---CCCHH---H-HHHHHHCCCCEEEEc---
Confidence 65432 221 1 1567888888875 2232 23333 2 445778999999983
Q ss_pred cccCHHHH---HHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCC
Q 006969 258 GITMPTEF---GKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGA 307 (623)
Q Consensus 258 G~~~P~~v---~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA 307 (623)
|.+. -..++.++.-+|+ +++. =.-|...-|.-.-+.+|+
T Consensus 136 ----Pa~~~gg~~~lk~l~~p~p~---~~~~----ptGGV~~~ni~~~l~ag~ 177 (212)
T PRK05718 136 ----PAEASGGVKMLKALAGPFPD---VRFC----PTGGISPANYRDYLALPN 177 (212)
T ss_pred ----cchhccCHHHHHHHhccCCC---CeEE----EeCCCCHHHHHHHHhCCC
Confidence 4332 2567777777775 3444 345777788888888883
No 87
>PRK09234 fbiC FO synthase; Reviewed
Probab=95.64 E-value=0.78 Score=55.27 Aligned_cols=202 Identities=16% Similarity=0.037 Sum_probs=122.9
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-hHH----HHHHHHHHHhccccccCCCccceEEeeccc------ch
Q 006969 94 PGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK-EDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRC------NE 162 (623)
Q Consensus 94 ~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~------~~ 162 (623)
....++.++.++.++...+.|+..|-+-. +..| .+. +.++.|.+..+. ..|+++++. ..
T Consensus 553 ~~y~Ls~eeI~~~a~ea~~~G~tev~i~g-G~~p~~~~~~y~~lir~IK~~~p~---------i~i~afsp~Ei~~~a~~ 622 (843)
T PRK09234 553 DAYTLSLDEVADRAWEAWVAGATEVCMQG-GIHPELPGTGYADLVRAVKARVPS---------MHVHAFSPMEIVNGAAR 622 (843)
T ss_pred CcccCCHHHHHHHHHHHHHCCCCEEEEec-CCCCCcCHHHHHHHHHHHHHhCCC---------eeEEecChHHHHHHHHH
Confidence 35679999999999999999999887742 2222 122 445555554211 245565431 11
Q ss_pred --hhHHHHHHHHhcCCCCEEEE-EecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHH
Q 006969 163 --RDIKTAWEAVKYAKRPRIHT-FIATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (623)
Q Consensus 163 --~dI~~a~eal~~a~~~~v~i-~~~~Sd~h~~~~l---~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l 236 (623)
-.++..+..++++|++.++- .....+-.++..+ +++.++- .+.++.|++.|++ ++-....+.--+++..
T Consensus 623 ~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~w----le~i~~Ah~lGi~-~~stmm~G~~Et~edr 697 (843)
T PRK09234 623 LGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEW----IEVVTTAHEVGLR-SSSTMMYGHVDTPRHW 697 (843)
T ss_pred cCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHH----HHHHHHHHHcCCC-cccceEEcCCCCHHHH
Confidence 12344567788889988752 1111111222222 2344443 4688889999997 4433333444677888
Q ss_pred HHHHHHHHHcCCc------EEe----ecCc--------ccccCHHHHHHHHHHHHHhCCC-CcceeEEEeecCCcchHHH
Q 006969 237 YEILGEVIKVGAT------TLN----IPDT--------VGITMPTEFGKLIADIKANTPG-IENVVISTHCQNDLGLSTA 297 (623)
Q Consensus 237 ~~~~~~~~~aGa~------~I~----l~DT--------vG~~~P~~v~~li~~l~~~~~~-~~~v~i~~H~HND~GlAvA 297 (623)
.+.+..+.+.+.+ -|- -++| ....+|.+.-+++...|=-+|+ +.++.-++ ..+|.-
T Consensus 698 v~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w---v~lg~~-- 772 (843)
T PRK09234 698 VAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW---VKLGVE-- 772 (843)
T ss_pred HHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh---hhcCHH--
Confidence 8888888888753 121 2233 1237789999999888877763 32344444 344543
Q ss_pred HHHHHHHhCCCEEEeccC
Q 006969 298 NTIAGACAGARQVEVTIN 315 (623)
Q Consensus 298 NslaAv~aGA~~Vd~Tv~ 315 (623)
-+..++.+||+-+.+|+.
T Consensus 773 ~~q~~L~~GaNDlgGtl~ 790 (843)
T PRK09234 773 GTRAMLRGGANDLGGTLM 790 (843)
T ss_pred HHHHHHhcCCcCcccccc
Confidence 357899999999988764
No 88
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=95.64 E-value=0.4 Score=51.36 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhccccccCCCc-cceEEeecccchhhHHHHHHHHh
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
.|+.++..++++.+.+.|++.|-+ |=|-..++=.+.++.+.+.. ++ ...+.. +-.-+..-++.++
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~--------~l~~i~itT----NG~ll~~~~~~L~ 111 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLP--------GLEELSLTT----NGSRLARFAAELA 111 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCC--------CCceEEEEe----ChhHHHHHHHHHH
Confidence 589999999999999999999888 44765554346666665421 11 112222 2122333456677
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
.+|+++|.+.+-+.+-....+++. ...++.+.+.++.+++.|+..|.++..-....+.+.+.++++.+.+.|++..
T Consensus 112 ~aGl~~v~ISlDs~~~e~~~~i~~--~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 112 DAGLKRLNISLDTLRPELFAALTR--NGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred HcCCCeEEEEeccCCHHHhhhhcC--CCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 889999998776654322223322 2346778888888999887324443221223556788888888888888653
No 89
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.57 E-value=0.24 Score=49.84 Aligned_cols=174 Identities=20% Similarity=0.253 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcC
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 175 (623)
-.++.++-+++++.+.+. +|.||+|-|-...+-.+.++.|++..++. ..++.+--+..-+++. +...++
T Consensus 11 D~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG~~aV~~lr~~~pd~--------~IvAD~Kt~D~G~~e~--~ma~~a 79 (217)
T COG0269 11 DLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEGMRAVRALRELFPDK--------IIVADLKTADAGAIEA--RMAFEA 79 (217)
T ss_pred cccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhhHHHHHHHHHHCCCC--------eEEeeeeecchhHHHH--HHHHHc
Confidence 356899999999999999 99999999865444468899998865432 2344333333333432 222335
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeec-
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP- 254 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~- 254 (623)
|.+.+.+...+.+ +-+..+++.|++.|+. +.... .+-.||+...+ .+.++|++.+.+=
T Consensus 80 GAd~~tV~g~A~~---------------~TI~~~i~~A~~~~~~-v~iDl--~~~~~~~~~~~---~l~~~gvd~~~~H~ 138 (217)
T COG0269 80 GADWVTVLGAADD---------------ATIKKAIKVAKEYGKE-VQIDL--IGVWDPEQRAK---WLKELGVDQVILHR 138 (217)
T ss_pred CCCEEEEEecCCH---------------HHHHHHHHHHHHcCCe-EEEEe--ecCCCHHHHHH---HHHHhCCCEEEEEe
Confidence 8888887765543 4456788888998864 55443 23345554433 3344787766652
Q ss_pred --C--cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 255 --D--TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 255 --D--TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
| +.|...+++--+-++.+.+. + ..+.+ .-|+-.-+.-.....|++.|
T Consensus 139 g~D~q~~G~~~~~~~l~~ik~~~~~--g---~~vAV----aGGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 139 GRDAQAAGKSWGEDDLEKIKKLSDL--G---AKVAV----AGGITPEDIPLFKGIGADIV 189 (217)
T ss_pred cccHhhcCCCccHHHHHHHHHhhcc--C---ceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence 2 23444434433333333321 0 12333 24555566666666666554
No 90
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.51 E-value=1.3 Score=46.10 Aligned_cols=184 Identities=22% Similarity=0.279 Sum_probs=94.0
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEEec----CCCC---h-hHHHHHHHHHHHhccccccCCCccceEEeecccchhhH
Q 006969 94 PGATLTSKEKLDIARQLAKLGVDIIEAGF----PAAS---K-EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI 165 (623)
Q Consensus 94 ~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf----P~~s---~-~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI 165 (623)
.|..++.++-++.++.+.+.|.|+|++|. |... + +|++.+..+.+.+.... . .| + +.=-.+.+-+
T Consensus 17 g~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~----~-~p-l-SIDT~~~~v~ 89 (257)
T cd00739 17 GGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL----D-VL-I-SVDTFRAEVA 89 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----C-Cc-E-EEeCCCHHHH
Confidence 35568999999999999999999999995 4322 2 24455443333322110 0 12 2 2222355556
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCC--------------
Q 006969 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRS-------------- 231 (623)
Q Consensus 166 ~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~-------------- 231 (623)
+.|++. |++.|. ++|- ... + .++++.++++|+. |...+.++...
T Consensus 90 e~al~~----G~~iIN---disg--------~~~----~--~~~~~l~~~~~~~-vV~m~~~g~p~~~~~~~~~~~~~~~ 147 (257)
T cd00739 90 RAALEA----GADIIN---DVSG--------GSD----D--PAMLEVAAEYGAP-LVLMHMRGTPKTMQENPYYEDVVDE 147 (257)
T ss_pred HHHHHh----CCCEEE---eCCC--------CCC----C--hHHHHHHHHcCCC-EEEECCCCCCcccccCCCcccHHHH
Confidence 666664 666554 3331 000 0 1344556677775 33333222111
Q ss_pred CHHHHHHHHHHHHHcCCc--EEeecCc-cccc-CHHHHHHHHHH---HHHhCCCCcceeEEE------------eecCCc
Q 006969 232 DRKFLYEILGEVIKVGAT--TLNIPDT-VGIT-MPTEFGKLIAD---IKANTPGIENVVIST------------HCQNDL 292 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~--~I~l~DT-vG~~-~P~~v~~li~~---l~~~~~~~~~v~i~~------------H~HND~ 292 (623)
-.+++.+.++.+.++|.. .|.+ |- +|.. ++++-.++++. +++. +. .+-+|+ -..+-.
T Consensus 148 ~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~gf~ks~~~~~~~l~~i~~l~~~--~~-pil~G~SrkSfig~~~~~~~~~r~ 223 (257)
T cd00739 148 VLSFLEARLEAAESAGVARNRIIL-DPGIGFGKTPEHNLELLRRLDELKQL--GL-PVLVGASRKSFIGALLGREPKDRD 223 (257)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEE-ecCCCcccCHHHHHHHHHHHHHHHhC--CC-cEEEEecccHHHHHhcCCCccccc
Confidence 124566777778888874 4443 33 2322 23333344433 3432 11 133333 223444
Q ss_pred chHHHHHHHHHHhCCCEE
Q 006969 293 GLSTANTIAGACAGARQV 310 (623)
Q Consensus 293 GlAvANslaAv~aGA~~V 310 (623)
+--+|-+..|++.||+.|
T Consensus 224 ~~t~~~~~~~~~~Ga~ii 241 (257)
T cd00739 224 WGTLALSALAAANGADIV 241 (257)
T ss_pred hhHHHHHHHHHHcCCCEE
Confidence 555555666777777766
No 91
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=95.49 E-value=0.97 Score=49.42 Aligned_cols=169 Identities=13% Similarity=0.036 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEe--c-CCCCh-hH-HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAG--F-PAASK-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvG--f-P~~s~-~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
..++.++.++.++.+.+.|++.|-+- - |...+ +. .+.++.|.+..+. . .+... ....++ ++
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~-------i--~i~~g-~lt~e~----l~ 167 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSS-------V--SIEVQ-PLSEEE----YA 167 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCC-------c--eeccC-CCCHHH----HH
Confidence 46899999999999999999988663 2 32222 11 2444444432210 0 11111 112333 35
Q ss_pred HHhcCCCCEEEEEecCC-HHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCC
Q 006969 171 AVKYAKRPRIHTFIATS-GIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 171 al~~a~~~~v~i~~~~S-d~h~~~~l~~-t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa 248 (623)
.|+.+|+++++++.-++ +-+. .++.. .+.-..+...+.++.|++.|++.|+.+..-+-.-..+...+++..+.+.+.
T Consensus 168 ~Lk~aGv~r~~i~lET~~~~~~-~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~ 246 (371)
T PRK09240 168 ELVELGLDGVTVYQETYNPATY-AKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQR 246 (371)
T ss_pred HHHHcCCCEEEEEEecCCHHHH-HHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHH
Confidence 67888999999998885 4443 33321 111123455568899999998645443332222234556666665555543
Q ss_pred c------EEe---ecCccc------ccCHHHHHHHHHHHHHhCCCC
Q 006969 249 T------TLN---IPDTVG------ITMPTEFGKLIADIKANTPGI 279 (623)
Q Consensus 249 ~------~I~---l~DTvG------~~~P~~v~~li~~l~~~~~~~ 279 (623)
. .|. |-...| .++|.++.++|..+|--+|..
T Consensus 247 ~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~ 292 (371)
T PRK09240 247 KYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDV 292 (371)
T ss_pred hCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCccc
Confidence 2 343 333333 257899999999999888864
No 92
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=95.46 E-value=0.6 Score=50.42 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe--cCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhc
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG--FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 174 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ 174 (623)
.|+.++..++++.+.++|+..|-++ =|-..|+=.+.++.+.+. ++...+..-+-... +..++.+++
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~---------g~~~~l~TNG~ll~---~e~~~~L~~ 103 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRL---------GLYTNLITSGVGLT---EARLDALAD 103 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHc---------CCeEEEEeCCccCC---HHHHHHHHh
Confidence 4899999999999999999888773 466555434555555442 22222322111111 123345666
Q ss_pred CCCCEEEEEecCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 006969 175 AKRPRIHTFIATS--GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (623)
Q Consensus 175 a~~~~v~i~~~~S--d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~ 252 (623)
.|.+.|.+.+-.. +.|.. ++.. ...++.+.+.++.+++.|+. |.+... .++.+.+.+.++++.+.+.|++.+.
T Consensus 104 ~g~~~v~iSldg~~~e~~d~--~rg~-~g~f~~v~~~i~~l~~~g~~-v~v~~v-v~~~N~~~l~~~~~~~~~lg~~~i~ 178 (358)
T TIGR02109 104 AGLDHVQLSFQGVDEALADR--IAGY-KNAFEQKLAMARAVKAAGLP-LTLNFV-IHRHNIDQIPEIIELAIELGADRVE 178 (358)
T ss_pred CCCCEEEEeCcCCCHHHHHH--hcCC-ccHHHHHHHHHHHHHhCCCc-eEEEEE-eccCCHHHHHHHHHHHHHcCCCEEE
Confidence 7888888766554 34433 3221 23577888899999999986 555442 4577889999999999999999887
Q ss_pred e
Q 006969 253 I 253 (623)
Q Consensus 253 l 253 (623)
+
T Consensus 179 ~ 179 (358)
T TIGR02109 179 L 179 (358)
T ss_pred E
Confidence 6
No 93
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.46 E-value=1.6 Score=42.98 Aligned_cols=156 Identities=20% Similarity=0.191 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~ 178 (623)
+.++-+++++.|.+.|++.||+-+ .++...+.++.+.+..++ ..+.+-.-...++++.++++ |.+
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~--~~~~~~~~i~~l~~~~~~---------~~iGag~v~~~~~~~~a~~~----Ga~ 78 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITL--RTPGALEAIRALRKEFPE---------ALIGAGTVLTPEQADAAIAA----GAQ 78 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--CChhHHHHHHHHHHHCCC---------CEEEEEeCCCHHHHHHHHHc----CCC
Confidence 588889999999999999999976 355566788888775421 11222122246777777765 888
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCccc
Q 006969 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG 258 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG 258 (623)
.||. +.++ .+.+++++..|.. +.... ++++.+ ..+.++|+|.|.+ +-.
T Consensus 79 ~i~~--p~~~------------------~~~~~~~~~~~~~-~i~gv-----~t~~e~----~~A~~~Gad~i~~-~p~- 126 (190)
T cd00452 79 FIVS--PGLD------------------PEVVKAANRAGIP-LLPGV-----ATPTEI----MQALELGADIVKL-FPA- 126 (190)
T ss_pred EEEc--CCCC------------------HHHHHHHHHcCCc-EECCc-----CCHHHH----HHHHHCCCCEEEE-cCC-
Confidence 8864 2222 2567778888765 33322 254443 3445789999987 332
Q ss_pred ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 259 ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 259 ~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.|. -.++++.+++.+|. +++..= -|.-..|....+++|++.|=
T Consensus 127 --~~~-g~~~~~~l~~~~~~---~p~~a~----GGI~~~n~~~~~~~G~~~v~ 169 (190)
T cd00452 127 --EAV-GPAYIKALKGPFPQ---VRFMPT----GGVSLDNAAEWLAAGVVAVG 169 (190)
T ss_pred --ccc-CHHHHHHHHhhCCC---CeEEEe----CCCCHHHHHHHHHCCCEEEE
Confidence 222 45577777776664 344332 35556899999999988763
No 94
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.43 E-value=0.49 Score=48.90 Aligned_cols=177 Identities=21% Similarity=0.345 Sum_probs=107.3
Q ss_pred eEEEeCC---CcccCCC---C-CCCC-CHHHHHHHHHHHhHcCCCEEEEe--cCCCChhHH-----HHHHHHHHHhcccc
Q 006969 80 VRVFDTT---LRDGEQS---P-GATL-TSKEKLDIARQLAKLGVDIIEAG--FPAASKEDF-----EAVRTIAKEVGNAV 144 (623)
Q Consensus 80 v~I~DtT---LRDG~Q~---~-g~~~-t~e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~-----e~v~~i~~~~~~~~ 144 (623)
+.|+|+- .+.|... . +.++ +.|+.+.+|+.+.++|.+.+=.| .|+.||.+| +.++.+.+..
T Consensus 30 ~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~---- 105 (286)
T COG2876 30 DTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAA---- 105 (286)
T ss_pred ceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHH----
Confidence 4566654 5555321 1 2344 68999999999999999999998 499999775 3444444321
Q ss_pred ccCCCccceEEeecccchhhHHHHHHH----------------HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHH
Q 006969 145 DAESGYVPVICGLSRCNERDIKTAWEA----------------VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARS 208 (623)
Q Consensus 145 ~~~~~l~~~i~~~~r~~~~dI~~a~ea----------------l~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~ 208 (623)
+..|+ |.+.= -.+.+|++.+.+. |++.|.-.. |+-+++-+.-|.+|. ..
T Consensus 106 -~~~Gl-~vvtE--vm~~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~k-------PvLLKRg~~aTieEw----L~ 170 (286)
T COG2876 106 -DETGL-PVVTE--VMDVRDVEAAAEYADILQVGARNMQNFALLKEVGRQNK-------PVLLKRGLSATIEEW----LN 170 (286)
T ss_pred -HHcCC-eeEEE--ecCHHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCC-------CeEEecCccccHHHH----HH
Confidence 11244 22221 1256777766542 222222111 111122334455554 45
Q ss_pred HHHHHHHcCCCeEEE------ccc-------------------------CCCC--CCHHHHHHHHHHHHHcCCcEEe---
Q 006969 209 MVKFARSLGCDDVEF------SPE-------------------------DAGR--SDRKFLYEILGEVIKVGATTLN--- 252 (623)
Q Consensus 209 ~v~~ak~~G~~~V~f------~~e-------------------------da~r--~d~e~l~~~~~~~~~aGa~~I~--- 252 (623)
+.+|+.+.|...|.. ..| |-+. -..+++..++++++.+|||.|.
T Consensus 171 AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEV 250 (286)
T COG2876 171 AAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEV 250 (286)
T ss_pred HHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEe
Confidence 778888887543321 111 1111 1247888999999999998764
Q ss_pred -------ecCcccccCHHHHHHHHHHHHHh
Q 006969 253 -------IPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 253 -------l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
|+|.-=.++|+++.+++..++.-
T Consensus 251 Hp~P~~AlsD~~Qql~~~~f~~l~~~~~~~ 280 (286)
T COG2876 251 HPDPEKALSDAKQQLTPEEFEELVKELRAL 280 (286)
T ss_pred cCCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 67999999999999999998863
No 95
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=95.43 E-value=0.76 Score=47.36 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc---C-CCCCCHHHHHHHH
Q 006969 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---D-AGRSDRKFLYEIL 240 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e---d-a~r~d~e~l~~~~ 240 (623)
+++.++..+..|.+.|.++....... .......+...+.+.+++++|++.|+. +.+-+. . ..-.+++.+.+++
T Consensus 92 ~~~~i~~a~~lGa~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~iE~~~~~~~~~~~t~~~~~~l~ 168 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLISAAHAGYL--TPPNVIWGRLAENLSELCEYAENIGMD-LILEPLTPYESNVVCNANDVLHAL 168 (275)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCCCCcccccCCHHHHHHHH
Confidence 34455555666888876643211000 000112345666777888889999874 544321 1 1123456666666
Q ss_pred HHHHHcCC-cEEeecCcccc-cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCcc
Q 006969 241 GEVIKVGA-TTLNIPDTVGI-TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (623)
Q Consensus 241 ~~~~~aGa-~~I~l~DTvG~-~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlG 318 (623)
+.+ +- ..-.+.|+.=. ....++.+.++.+ ++ -...+|++|..+-. +. -.-.|
T Consensus 169 ~~~---~~~~v~~~~D~~h~~~~~~~~~~~i~~~----~~---rI~~vHi~D~~~~~---------------~~-~~~pG 222 (275)
T PRK09856 169 ALV---PSPRLFSMVDICAPYVQAEPVMSYFDKL----GD---KLRHLHIVDSDGAS---------------DT-HYIPG 222 (275)
T ss_pred HHc---CCCcceeEEeecchhcCCCCHHHHHHHh----CC---cEEEEEEEcCCCCC---------------CC-CcCCC
Confidence 543 32 22233477432 2223333444433 22 25789999876520 11 11234
Q ss_pred CccCcccHHHHHHHHHhccc
Q 006969 319 ERAGNASLEEVVMAFKCRGE 338 (623)
Q Consensus 319 ERaGNa~lEevv~~L~~~~~ 338 (623)
+ |+.+..+++..|+..|.
T Consensus 223 ~--G~id~~~i~~~L~~~gy 240 (275)
T PRK09856 223 E--GKMPLRELMRDIIDRGY 240 (275)
T ss_pred C--CCCCHHHHHHHHHHcCC
Confidence 4 89999999999998763
No 96
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.42 E-value=0.61 Score=46.80 Aligned_cols=154 Identities=20% Similarity=0.267 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-+.++-+++++.|.+.|++.||+.| .+|.-.+.++.+++..+. ..|-+=+-.+.++.+.+.++ |.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~---------~~vGAGTVl~~~~a~~a~~a----GA 81 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPD---------ALIGAGTVLNPEQLRQAVDA----GA 81 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCC---------CEEEEEeCCCHHHHHHHHHc----CC
Confidence 3789999999999999999999988 457667888888875421 12222233467788877775 76
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 257 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv 257 (623)
+-+ ..|.++ .+.+++++++|+. +-| +-.+|..+ ..+.++|++.|-|
T Consensus 82 ~Fi--vsP~~~------------------~~v~~~~~~~~i~---~iP---G~~TptEi----~~A~~~Ga~~vKl---- 127 (204)
T TIGR01182 82 QFI--VSPGLT------------------PELAKHAQDHGIP---IIP---GVATPSEI----MLALELGITALKL---- 127 (204)
T ss_pred CEE--ECCCCC------------------HHHHHHHHHcCCc---EEC---CCCCHHHH----HHHHHCCCCEEEE----
Confidence 654 233321 1678899999875 333 12333322 3466899998775
Q ss_pred cccCHHH-H--HHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 258 GITMPTE-F--GKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 258 G~~~P~~-v--~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.|.. + -.+|+.|+.=+|+. ++- -.-|....|.-.-+.+|+..+
T Consensus 128 ---FPA~~~GG~~yikal~~plp~i---~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 128 ---FPAEVSGGVKMLKALAGPFPQV---RFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred ---CCchhcCCHHHHHHHhccCCCC---cEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 3322 2 25788888877753 332 346777789999999998865
No 97
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=95.37 E-value=1.5 Score=45.45 Aligned_cols=212 Identities=17% Similarity=0.156 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--C------CCChhHHHHHHHHHHHh-ccccccCCCccceEEeecccc-------
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGF--P------AASKEDFEAVRTIAKEV-GNAVDAESGYVPVICGLSRCN------- 161 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P------~~s~~d~e~v~~i~~~~-~~~~~~~~~l~~~i~~~~r~~------- 161 (623)
++.+++++++ .++|++.||+-. + ..++++.+.++.+.+.. +..+.- ..+....+....
T Consensus 10 ~~l~~~l~~a---~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~r~~~ 83 (279)
T cd00019 10 FGLENALKRA---KEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV---HAPYLINLASPDKEKREKS 83 (279)
T ss_pred ccHHHHHHHH---HHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE---EcCceeccCCCCHHHHHHH
Confidence 7777766655 566999999842 2 12345566666555432 111000 001111121111
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc-CC---CCCCHHHHH
Q 006969 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DA---GRSDRKFLY 237 (623)
Q Consensus 162 ~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e-da---~r~d~e~l~ 237 (623)
.+.++++++..+..|.+.|.++....+-. ......+..++.+.+++++|++.|+. +.+-+. .. .-.+++.+.
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~---~~~~~~~~~~~~l~~l~~~a~~~gi~-l~lEn~~~~~~~~~~t~~~~~ 159 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQ---SKEEGLKRVIEALNELIDKAETKGVV-IALETMAGQGNEIGSSFEELK 159 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCC---CHHHHHHHHHHHHHHHHHhccCCCCE-EEEeCCCCCCCCCCCCHHHHH
Confidence 11244556666667888876644432100 00012345567777788888888874 544222 11 134667777
Q ss_pred HHHHHHHHcCCcEEee-cCcc-----ccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 006969 238 EILGEVIKVGATTLNI-PDTV-----GIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l-~DTv-----G~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 309 (623)
++++.+- +-+.+.+ .|+. |.. +|++..+.+..+.+.++. +-...+|.||..+.-. + ..
T Consensus 160 ~li~~v~--~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~--~~i~~vHikD~~~~~~---------~-~~ 225 (279)
T cd00019 160 EIIDLIK--EKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGL--EYLKAIHLNDSKGELG---------S-GK 225 (279)
T ss_pred HHHHhcC--CCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhCh--hheeEEEEEcCCCccc---------C-CC
Confidence 7777653 0222322 2432 222 356677788877776542 2357999999754310 0 00
Q ss_pred EEeccCCccCccCcccHHHHHHHHHhcc
Q 006969 310 VEVTINGIGERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 310 Vd~Tv~GlGERaGNa~lEevv~~L~~~~ 337 (623)
- .-..+ +.|..++.+++..|+..+
T Consensus 226 ~--~~~~~--G~G~id~~~~l~~L~~~~ 249 (279)
T cd00019 226 D--RHEPI--GEGDIDGEELFKELKKDP 249 (279)
T ss_pred c--cccCC--CCCCcCCHHHHHHHHhCc
Confidence 0 01122 347899999999999765
No 98
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=95.35 E-value=0.66 Score=47.64 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=99.3
Q ss_pred HHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEee--ccc----------------chhhH
Q 006969 104 LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL--SRC----------------NERDI 165 (623)
Q Consensus 104 l~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~--~r~----------------~~~dI 165 (623)
.+.++.+.++|++.||+.+|.. .+.+.++.+.+.. |+......+ ... ..+.+
T Consensus 18 ~~~l~~~a~~Gf~~VEl~~~~~--~~~~~~~~~l~~~--------gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMFPYD--YDIEELKQVLASN--------KLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGV 87 (258)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC--CCHHHHHHHHHHc--------CCcEEEEcCCCCccccCcCccccCCCcHHHHHHHH
Confidence 3456778888999999977542 3455566555542 222111111 100 12345
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCH----HHHHHHHHHHHHHHHHcCCCeEEEccc------CCCCCCHHH
Q 006969 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTK----QQVVEIARSMVKFARSLGCDDVEFSPE------DAGRSDRKF 235 (623)
Q Consensus 166 ~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~----ee~l~~~~~~v~~ak~~G~~~V~f~~e------da~r~d~e~ 235 (623)
+++++..+..|.+.|.++....+ -+.+. +...+.+.++.++|++.|+. +.+-+. ...-.+++.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~n~~~~~~~~~~~~~~ 160 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDIL-LLIEPINHFDIPGFHLTGTRQ 160 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCCCcCCCCCccCCHHH
Confidence 66666666778888876532211 01122 33455667778888888874 444221 111235555
Q ss_pred HHHHHHHHHHcCCcEEe-ecCcccccCH-HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 236 LYEILGEVIKVGATTLN-IPDTVGITMP-TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~-l~DTvG~~~P-~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
+.++++.+ +.+.+. .-||.=.... ..+.+.++.+..+ ...+|.++..+-
T Consensus 161 ~~~ll~~v---~~~~v~l~~D~~h~~~~g~~~~~~~~~~~~r-------i~~vHikD~~~~------------------- 211 (258)
T PRK09997 161 ALKLIDDV---GCCNLKIQYDIYHMQRMEGELTNTMTQWADK-------IGHLQIADNPHR------------------- 211 (258)
T ss_pred HHHHHHHh---CCCCEEEEeEHHHhhhcCCcHHHHHHHhhCc-------ccEEEeCCCCCC-------------------
Confidence 65666543 444343 3365322211 1233334433322 357888874210
Q ss_pred cCCccCccCcccHHHHHHHHHhccc
Q 006969 314 INGIGERAGNASLEEVVMAFKCRGE 338 (623)
Q Consensus 314 v~GlGERaGNa~lEevv~~L~~~~~ 338 (623)
.-+| .|..+..+++..|+..|.
T Consensus 212 -~~~G--~G~id~~~i~~aL~~~Gy 233 (258)
T PRK09997 212 -GEPG--TGEINYDYLFKVIENSDY 233 (258)
T ss_pred -CCCC--CCcCCHHHHHHHHHHhCC
Confidence 1234 488999999999998763
No 99
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.34 E-value=2 Score=45.29 Aligned_cols=164 Identities=11% Similarity=-0.027 Sum_probs=102.3
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHH---HHH---hCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc-cCCC--CC
Q 006969 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHM---EHK---LRKTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG--RS 231 (623)
Q Consensus 161 ~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~---~~~---l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~-eda~--r~ 231 (623)
+...+.+.++.+..+|+..|++-..+++-++ ..+ .=.+.+|.+++++.+++... +.+ +.+.+ -|+. ..
T Consensus 90 ~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~--~~~-~~IiARTDa~~~~~ 166 (285)
T TIGR02320 90 NFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT--TED-FMIIARVESLILGK 166 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc--CCC-eEEEEecccccccC
Confidence 5566777777777789999988655544321 111 11477887777765544422 333 22221 1332 23
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
..+..++-+++..++|||.|.++ .+..+++++.++++.+...+|+ +|+-+.. ...+.= ..-.--+.|+++|-
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~---~pl~~~~-~~~~~~--~~~eL~~lG~~~v~ 238 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPR---TPLVIVP-TSYYTT--PTDEFRDAGISVVI 238 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCC---CCEEEec-CCCCCC--CHHHHHHcCCCEEE
Confidence 57888888999999999999997 3357899999999999876764 4454332 222221 23445567999974
Q ss_pred eccCCccCccCcccHHHHHHHHHhcc
Q 006969 312 VTINGIGERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 312 ~Tv~GlGERaGNa~lEevv~~L~~~~ 337 (623)
....- -|+-...+++++..+...|
T Consensus 239 ~~~~~--~~aa~~a~~~~~~~~~~~g 262 (285)
T TIGR02320 239 YANHL--LRAAYAAMQQVAERILEHG 262 (285)
T ss_pred EhHHH--HHHHHHHHHHHHHHHHHcC
Confidence 43322 3666667777777776543
No 100
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.32 E-value=1.6 Score=43.64 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEe-cCCCChhHHHHHHHHHHHhccccccCCCccceE-EeecccchhhHHHHHHHHhcCC
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAG-FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI-CGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvG-fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i-~~~~r~~~~dI~~a~eal~~a~ 176 (623)
+.++-.++++...+.|.+.|=+- -+......++.++.+.+.+. .|.+ .++.+ ....++.+++ +|
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~---------iPi~~~~~i~-~~~~v~~~~~----~G 94 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS---------LPVLRKDFII-DPYQIYEARA----AG 94 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC---------CCEEECCeec-CHHHHHHHHH----cC
Confidence 44567899999999999998663 23333333445555554321 1322 22222 2235555544 59
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCc
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT 256 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DT 256 (623)
++.|++..+.-+ . +.+.+.+++++..|++ +.+.. .+++. ++.+.+.|++.+.+-.+
T Consensus 95 ad~v~l~~~~~~----------~----~~~~~~~~~~~~~g~~-~~v~v-----~~~~e----~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 95 ADAVLLIVAALD----------D----EQLKELYELARELGME-VLVEV-----HDEEE----LERALALGAKIIGINNR 150 (217)
T ss_pred CCEEEEeeccCC----------H----HHHHHHHHHHHHcCCe-EEEEE-----CCHHH----HHHHHHcCCCEEEEeCC
Confidence 999998765432 1 3455677778888986 33322 13333 55667789999988877
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 257 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 257 vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.+...+..+ +++..+++.+|..-.+..+.-.++ ..|.....++||+.|
T Consensus 151 ~~~~~~~~~-~~~~~l~~~~~~~~pvia~gGI~s-----~edi~~~~~~Ga~gv 198 (217)
T cd00331 151 DLKTFEVDL-NTTERLAPLIPKDVILVSESGIST-----PEDVKRLAEAGADAV 198 (217)
T ss_pred CccccCcCH-HHHHHHHHhCCCCCEEEEEcCCCC-----HHHHHHHHHcCCCEE
Confidence 766666666 667788777642111333333332 367788888898876
No 101
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=95.28 E-value=1.5 Score=44.78 Aligned_cols=187 Identities=16% Similarity=0.169 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeec----------c------cc
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS----------R------CN 161 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~----------r------~~ 161 (623)
++.++. ++.+.++|++.||+.+|. +.+.+.++.+.+..+ + .+++++ | ..
T Consensus 14 ~~l~e~---~~~~~e~G~~~vEl~~~~--~~~~~~l~~~l~~~g--------l--~v~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR03234 14 LPFLER---FAAAAQAGFTGVEYLFPY--DWDAEALKARLAAAG--------L--EQVLFNLPAGDWAAGERGIACLPGR 78 (254)
T ss_pred CCHHHH---HHHHHHcCCCEEEecCCc--cCCHHHHHHHHHHcC--------C--eEEEEeCCCCccccCCCccccCCcc
Confidence 455554 455568899999998764 234555666655422 2 122221 0 00
Q ss_pred ----hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCC----HHHHHHHHHHHHHHHHHcCCCeEEEcccC------
Q 006969 162 ----ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT----KQQVVEIARSMVKFARSLGCDDVEFSPED------ 227 (623)
Q Consensus 162 ----~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t----~ee~l~~~~~~v~~ak~~G~~~V~f~~ed------ 227 (623)
.+.++++++..+..|.+.|.+.....+ -+.+ .+..++.+.+++++|++.|+. +.+-+..
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~-l~lE~~~~~~~~~ 151 (254)
T TIGR03234 79 EEEFREGVALAIAYARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLT-LLIEPINSFDMPG 151 (254)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEECCcccCCC
Confidence 123445555556668888876543211 0111 234456677888899999974 5443211
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEe-ecCcccccCH-HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 006969 228 AGRSDRKFLYEILGEVIKVGATTLN-IPDTVGITMP-TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (623)
Q Consensus 228 a~r~d~e~l~~~~~~~~~aGa~~I~-l~DTvG~~~P-~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 305 (623)
..-.+++.+.++++.+ +-+.+. ..|+.=...- +...++++.+..+ ...+|..|..|.
T Consensus 152 ~~l~t~~~~~~li~~v---~~~~~~i~~D~~h~~~~~e~~~~~i~~~~~~-------i~~vHi~D~~~~----------- 210 (254)
T TIGR03234 152 FFLTTTEQALAVIDDV---GRENLKLQYDLYHMQRMGGDLARTLAAYAAH-------IGHVQIADNPGR----------- 210 (254)
T ss_pred ChhcCHHHHHHHHHHh---CCCCEeEeeehhhhhhhCCCHHHHHHHhhcc-------EeEEEeCCCCCC-----------
Confidence 1123556666666544 433333 3355332211 1133344443322 357888774321
Q ss_pred CCCEEEeccCCccCccCcccHHHHHHHHHhccc
Q 006969 306 GARQVEVTINGIGERAGNASLEEVVMAFKCRGE 338 (623)
Q Consensus 306 GA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~ 338 (623)
.-.| .|+.+..+++..|+..|.
T Consensus 211 ---------~~~G--~G~id~~~il~~L~~~gy 232 (254)
T TIGR03234 211 ---------HEPG--TGEINYRFLFAVLDRLGY 232 (254)
T ss_pred ---------CCCC--CCccCHHHHHHHHHHCCC
Confidence 0123 589999999999998653
No 102
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.18 E-value=0.81 Score=48.30 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc--------------cccCH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV--------------GITMP 262 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv--------------G~~~P 262 (623)
.|.+|.++.+...+... .+. |.++.+.+ -++..+.+.++.++++|+..|+|-|.+ ....+
T Consensus 61 ~~~~e~~~~~~~I~~a~---~~P-v~~D~d~G--g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ 134 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVT---TKP-IILDGDTG--GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASV 134 (285)
T ss_pred CCHHHHHHHHHHHHhhc---CCC-EEEecCCC--CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCH
Confidence 46788887765554432 344 88999655 699999999999999999999999875 34678
Q ss_pred HHHHHHHHHHHHhCCCCcceeEEEe----e-cCCcchHHHHHHHHHHhCCCEEEec
Q 006969 263 TEFGKLIADIKANTPGIENVVISTH----C-QNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 263 ~~v~~li~~l~~~~~~~~~v~i~~H----~-HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
++..+.|+..++.-.+. ++.|-.. . ...+--++.-+.++.+|||+.|=.-
T Consensus 135 ee~~~kI~Aa~~a~~~~-~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 135 EEFCGKIRAGKDAQTTE-DFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHHHHHHHHhccCC-CeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 88888888887752222 3556555 1 1235567778889999999987553
No 103
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.09 E-value=1.1 Score=46.71 Aligned_cols=180 Identities=16% Similarity=0.197 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH-----HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
=+.++-+++|+.|.++|+..+=.|+ |+++|..| +.++.+.+.... .|+ +.++- -.....++...+
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~-----~Gl-~~~te--~~d~~~~~~l~~ 109 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDK-----YNL-PVVTE--VMDTRDVEEVAD 109 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHH-----cCC-CEEEe--eCChhhHHHHHH
Confidence 3789999999999999999999885 77665432 233333332111 122 22221 123444554433
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
. ++.+.| +..+... .+.++++.+.|+. |.++- +...+++.+...++.+...|-..
T Consensus 110 ~-----vd~~kI--ga~~~~n---------------~~LL~~~a~~gkP-V~lk~--G~~~s~~e~~~A~e~i~~~Gn~~ 164 (266)
T PRK13398 110 Y-----ADMLQI--GSRNMQN---------------FELLKEVGKTKKP-ILLKR--GMSATLEEWLYAAEYIMSEGNEN 164 (266)
T ss_pred h-----CCEEEE--CcccccC---------------HHHHHHHhcCCCc-EEEeC--CCCCCHHHHHHHHHHHHhcCCCe
Confidence 2 455444 3322111 1345555567775 77753 32347777778888888889877
Q ss_pred EeecCc----c-cccCHHHHH-HHHHHHHHhCCCCcceeEEE-eecCC--cchHHHHHHHHHHhCCC--EEEeccC
Q 006969 251 LNIPDT----V-GITMPTEFG-KLIADIKANTPGIENVVIST-HCQND--LGLSTANTIAGACAGAR--QVEVTIN 315 (623)
Q Consensus 251 I~l~DT----v-G~~~P~~v~-~li~~l~~~~~~~~~v~i~~-H~HND--~GlAvANslaAv~aGA~--~Vd~Tv~ 315 (623)
+.|+.. + ++. +..+. ..+..+++.++ +||++ =.|-. .-+...-+++|+.+||+ .|+.-+.
T Consensus 165 i~L~~rG~~t~~~Y~-~~~vdl~~i~~lk~~~~----~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 165 VVLCERGIRTFETYT-RNTLDLAAVAVIKELSH----LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EEEEECCCCCCCCCC-HHHHHHHHHHHHHhccC----CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 777764 3 333 33332 34566666653 45776 34432 23557779999999999 6765544
No 104
>PTZ00413 lipoate synthase; Provisional
Probab=94.99 E-value=2.1 Score=46.89 Aligned_cols=167 Identities=12% Similarity=0.068 Sum_probs=102.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCC---ChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAA---SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~---s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
..++.++-.++|+...++|++++=+.+... ...+++.+-...+.+....+ + ..|+++.--- .+-+.+++.|
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p---~--~~IevligDf-~g~~e~l~~L 248 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNP---E--LLLEALVGDF-HGDLKSVEKL 248 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCC---C--CeEEEcCCcc-ccCHHHHHHH
Confidence 457999999999999999999887776432 12334333333332222111 1 2455443100 1113466778
Q ss_pred hcCCCCEEEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHc---CCCeEEEcccCCCCCCHHHHHHHHHHHHHcC
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKL--RKTKQQVVEIARSMVKFARSL---GCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l--~~t~ee~l~~~~~~v~~ak~~---G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG 247 (623)
+++|.++++--+-|++-+-...- +-+-++ ..+.++.+|+. |+. ++-+.+-+---+.+.+++++..+.+.|
T Consensus 249 ~eAG~dvynHNLETv~rLyp~VRt~~atYe~----sLe~Lr~AKe~f~~gi~-tcSGiIVGLGET~eEvie~m~dLrelG 323 (398)
T PTZ00413 249 ANSPLSVYAHNIECVERITPYVRDRRASYRQ----SLKVLEHVKEFTNGAML-TKSSIMLGLGETEEEVRQTLRDLRTAG 323 (398)
T ss_pred HhcCCCEEecccccCHhHHHHHccCcCCHHH----HHHHHHHHHHHhcCCce-EeeeeEecCCCCHHHHHHHHHHHHHcC
Confidence 88999999998888886554332 124444 44566777765 553 321222222345577889999999999
Q ss_pred CcEEeec----------CcccccCHHHHHHHHHHHH
Q 006969 248 ATTLNIP----------DTVGITMPTEFGKLIADIK 273 (623)
Q Consensus 248 a~~I~l~----------DTvG~~~P~~v~~li~~l~ 273 (623)
+|.+.|. --.-+.+|+++.++=..-.
T Consensus 324 VDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~ 359 (398)
T PTZ00413 324 VSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAM 359 (398)
T ss_pred CcEEeeccccCCCcccCCceeccCHHHHHHHHHHHH
Confidence 9999883 3445678888877655443
No 105
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=94.99 E-value=2.9 Score=45.09 Aligned_cols=221 Identities=20% Similarity=0.127 Sum_probs=137.4
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCC-hhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHh
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAAS-KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s-~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
...++.++.++-|+...+.|.-.+.+|.-.-+ +.+++.+-.+++.+.+. .++ ...+.++....+.. +.|+
T Consensus 81 ~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~----~~l-e~c~slG~l~~eq~----~~L~ 151 (335)
T COG0502 81 RKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEE----LGL-EVCASLGMLTEEQA----EKLA 151 (335)
T ss_pred hhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHh----cCc-HHhhccCCCCHHHH----HHHH
Confidence 35689999999999999999777777643332 34555554444444321 122 34455565544433 3466
Q ss_pred cCCCCEEEEEecCCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC-CcEE
Q 006969 174 YAKRPRIHTFIATSGIHME-HKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTL 251 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~-~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG-a~~I 251 (623)
++|++++.-..-||+-+-. ..-..|.|+ -.+.++.+|+.|++ |+-+.--+---+.+.-.+.+..+.+.. ++.|
T Consensus 152 ~aGvd~ynhNLeTs~~~y~~I~tt~t~ed----R~~tl~~vk~~Gi~-vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsV 226 (335)
T COG0502 152 DAGVDRYNHNLETSPEFYENIITTRTYED----RLNTLENVREAGIE-VCSGGIVGLGETVEDRAELLLELANLPTPDSV 226 (335)
T ss_pred HcChhheecccccCHHHHcccCCCCCHHH----HHHHHHHHHHcCCc-cccceEecCCCCHHHHHHHHHHHHhCCCCCee
Confidence 7799998887777765443 223455554 45688999999997 554332233345566667777788877 7665
Q ss_pred ee------cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCcc
Q 006969 252 NI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (623)
Q Consensus 252 ~l------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERa 321 (623)
-| ++| .--..|.++-+.|+.+|=.+|... ++++ =.--.+.--....|+.|||+-|=++. .+.-..
T Consensus 227 PIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~-Ir~s---~gr~~~~~~~q~~~~~aGansi~~g~-~~ltt~ 301 (335)
T COG0502 227 PINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSM-IRLS---AGRETMLPELQALAFMAGANSIFVGD-KYLTTP 301 (335)
T ss_pred eeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcce-eEcc---CCcccccHHHHHHHHHhccceeeecc-eEeecC
Confidence 43 222 445688899999999999999653 5553 11122333346678889999885555 222223
Q ss_pred CcccHHHHHHHHHh
Q 006969 322 GNASLEEVVMAFKC 335 (623)
Q Consensus 322 GNa~lEevv~~L~~ 335 (623)
| .+.++-...|+.
T Consensus 302 ~-~~~e~D~~~l~~ 314 (335)
T COG0502 302 G-PDEDKDLELLKD 314 (335)
T ss_pred C-CCchhHHHHHHH
Confidence 3 666666666654
No 106
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=94.96 E-value=1.2 Score=48.59 Aligned_cols=169 Identities=13% Similarity=0.053 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--e-cCCCChhH--HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA--G-FPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv--G-fP~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 171 (623)
.++.++.++.++.+.+.|+..|=+ | .|...+-+ .+.++.|.+..+. ....++ ....+++ +.
T Consensus 102 ~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~-------i~Iei~---~lt~e~~----~~ 167 (366)
T TIGR02351 102 KLNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSS-------LAIEVQ---PLNEEEY----KK 167 (366)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCc-------cccccc---cCCHHHH----HH
Confidence 478999999999999999998754 2 24322222 2455555443210 001121 1233333 55
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCC--
Q 006969 172 VKYAKRPRIHTFIATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA-- 248 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h~~~~l~-~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa-- 248 (623)
|+++|+++++++.-+++--.-.++. ..+....+...+.++.|++.|++.|..+..-+-.-.......++..+.+.++
T Consensus 168 Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~ 247 (366)
T TIGR02351 168 LVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKY 247 (366)
T ss_pred HHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHc
Confidence 7778999999998887433333332 1111224555668999999998644432221111122333343333333322
Q ss_pred ----cEEe---ec------CcccccCHHHHHHHHHHHHHhCCCC
Q 006969 249 ----TTLN---IP------DTVGITMPTEFGKLIADIKANTPGI 279 (623)
Q Consensus 249 ----~~I~---l~------DTvG~~~P~~v~~li~~l~~~~~~~ 279 (623)
..|. |- ......+|.++.++|..+|-.+|..
T Consensus 248 ~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~ 291 (366)
T TIGR02351 248 WKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFV 291 (366)
T ss_pred CCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCccc
Confidence 2232 22 2234567899999999999988864
No 107
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=94.95 E-value=2.7 Score=43.61 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCC---------ChhHHHHHHHHHHHhccccccCCCccceEEe-------eccc
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAA---------SKEDFEAVRTIAKEVGNAVDAESGYVPVICG-------LSRC 160 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~---------s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-------~~r~ 160 (623)
.++.++.+++ +.++|++.||++.+.. ++.+.+.++...+..+-. +..++. ++..
T Consensus 15 ~~~~~e~l~~---~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------i~~~~~~~~~~~~l~~~ 84 (279)
T TIGR00542 15 GECWLERLQL---AKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVR-------IPSMCLSAHRRFPLGSK 84 (279)
T ss_pred CCCHHHHHHH---HHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCC-------ceeeecCCCccCcCCCc
Confidence 4566666655 4578999999974321 244445555444432211 112221 1111
Q ss_pred ch-------hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC-CCCCC
Q 006969 161 NE-------RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSD 232 (623)
Q Consensus 161 ~~-------~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed-a~r~d 232 (623)
.+ +.++.+++..+..|.+.|.++.. +...........+...+.+.+++++|+++|+. +.+-+.. ..-.+
T Consensus 85 ~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~t 161 (279)
T TIGR00542 85 DKAVRQQGLEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMSS 161 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhcC
Confidence 11 12455666667778888865421 10000000112345667777889999999974 4443221 11234
Q ss_pred HHHHHHHHHHHHHcCCcEEee-cCcccccCH-HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 233 RKFLYEILGEVIKVGATTLNI-PDTVGITMP-TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 233 ~e~l~~~~~~~~~aGa~~I~l-~DTvG~~~P-~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
++.+.++++ +.+-..+.+ .|+.-...- ....+.++... + -...+|.+|..+ | ..
T Consensus 162 ~~~~~~li~---~v~~~~v~~~~D~~h~~~~~~~~~~~i~~~~---~----~i~~vHikD~~~------------~--~~ 217 (279)
T TIGR00542 162 ISKWLKWDH---YLNSPWFTLYPDIGNLSAWDNDVQMELQLGI---D----KIVAIHLKDTKP------------G--QF 217 (279)
T ss_pred HHHHHHHHH---HcCCCceEEEeCcChhhhccCCHHHHHHHhh---h----hEEEEEeCCCCC------------C--cc
Confidence 444444443 334444333 466432100 01122232222 2 246889998643 1 11
Q ss_pred EeccCCccCccCcccHHHHHHHHHhccc
Q 006969 311 EVTINGIGERAGNASLEEVVMAFKCRGE 338 (623)
Q Consensus 311 d~Tv~GlGERaGNa~lEevv~~L~~~~~ 338 (623)
+. ..+| .|+.+...++..|+..|.
T Consensus 218 ~~--~p~G--~G~id~~~~~~aL~~~gy 241 (279)
T TIGR00542 218 KD--VPFG--EGCVDFERCFKTLKQLNY 241 (279)
T ss_pred CC--cCCC--CCccCHHHHHHHHHHhCC
Confidence 11 1233 488999999999998764
No 108
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=94.92 E-value=0.66 Score=47.98 Aligned_cols=208 Identities=17% Similarity=0.158 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCC---------CChhHHHHHHHHHHHhccccccCCCccceEE--e-----eccc
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPA---------ASKEDFEAVRTIAKEVGNAVDAESGYVPVIC--G-----LSRC 160 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~---------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~--~-----~~r~ 160 (623)
.++.++.++.+ .++|++.||+.++. .++++.+.++...+..+-. ++.++ + ++..
T Consensus 15 ~~~~~e~~~~~---~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~-------i~~~~~~~~~~~~~~~~ 84 (284)
T PRK13210 15 HLSWEERLVFA---KELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVR-------IPSMCLSGHRRFPFGSR 84 (284)
T ss_pred CCCHHHHHHHH---HHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCC-------ceEEecccccCcCCCCC
Confidence 46766665554 57799999997532 1234455555555543221 11221 1 1111
Q ss_pred c-------hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC-CCCCC
Q 006969 161 N-------ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSD 232 (623)
Q Consensus 161 ~-------~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed-a~r~d 232 (623)
. .+.++++++..+..|.+.|.+.... ......-....++.++.+.+.+++|+++|+. +.+-+.. ..-.+
T Consensus 85 d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~~ 161 (284)
T PRK13210 85 DPATRERALEIMKKAIRLAQDLGIRTIQLAGYD--VYYEEKSEETRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFMNS 161 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcc--cccccccHHHHHHHHHHHHHHHHHHHHhCCE-EEEEecCccccCC
Confidence 1 1234566666666788888764211 0000000123456677788889999999974 4442221 12234
Q ss_pred HHHHHHHHHHHHHcCCcEEeec-CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 233 RKFLYEILGEVIKVGATTLNIP-DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 233 ~e~l~~~~~~~~~aGa~~I~l~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
++.+.++++.+ +-+.+.++ |+- .+.=.. ......++. .. +-...+|.+|..+.-.. ..|... +
T Consensus 162 ~~~~~~l~~~v---~~~~~~~~~D~~-h~~~~~-~~~~~~l~~-~~---~~i~~vHikD~~~~~~~------~~g~~~-~ 225 (284)
T PRK13210 162 ISKWKKWDKEI---DSPWLTVYPDVG-NLSAWG-NDVWSELKL-GI---DHIAAIHLKDTYAVTET------SKGQFR-D 225 (284)
T ss_pred HHHHHHHHHHc---CCCceeEEecCC-hhhhcC-CCHHHHHHH-hc---CeEEEEEeccccccccC------CCCccc-c
Confidence 55566666554 44455554 552 211000 012233332 22 13578999986432000 011110 1
Q ss_pred eccCCccCccCcccHHHHHHHHHhccc
Q 006969 312 VTINGIGERAGNASLEEVVMAFKCRGE 338 (623)
Q Consensus 312 ~Tv~GlGERaGNa~lEevv~~L~~~~~ 338 (623)
..+| .|+.+..+++..|+..+.
T Consensus 226 ---~p~G--~G~id~~~~~~~L~~~gy 247 (284)
T PRK13210 226 ---VPFG--EGCVDFVGIFKTLKELNY 247 (284)
T ss_pred ---ccCC--CcccCHHHHHHHHHHcCC
Confidence 1233 488999999999998653
No 109
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=94.91 E-value=1.9 Score=44.70 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=73.4
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec----CCC---Ch-hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGF----PAA---SK-EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf----P~~---s~-~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (623)
|..++.++-++.++.+.+.|.++|.+|. |.. ++ +|++.+..+.+.+.... + .| ++.=+ .+.+-++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~----~-~p-lsiDT-~~~~vi~ 89 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP----D-VP-ISVDT-YRAEVAR 89 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----C-Ce-EEEeC-CCHHHHH
Confidence 4567899999999999999999999995 332 22 24455555544432110 1 12 33222 3566677
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC-CC-------------C
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RS-------------D 232 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~-r~-------------d 232 (623)
.|+++ |++.|. +++-. .. .++++.++++|.. +...+.++. ++ -
T Consensus 90 ~al~~----G~~iIN---sis~~--------~~-------~~~~~l~~~~~~~-vV~m~~~g~p~~~~~~~~~~~~~~~~ 146 (257)
T TIGR01496 90 AALEA----GADIIN---DVSGG--------QD-------PAMLEVAAEYGVP-LVLMHMRGTPRTMQENPHYEDVVEEV 146 (257)
T ss_pred HHHHc----CCCEEE---ECCCC--------CC-------chhHHHHHHcCCc-EEEEeCCCCCcccccCCCcccHHHHH
Confidence 77664 777554 33310 01 1344556777876 333222211 11 1
Q ss_pred HHHHHHHHHHHHHcCCc--EEeecCc
Q 006969 233 RKFLYEILGEVIKVGAT--TLNIPDT 256 (623)
Q Consensus 233 ~e~l~~~~~~~~~aGa~--~I~l~DT 256 (623)
.+++.+.++.+.++|.+ .|.| |-
T Consensus 147 ~~~~~~~i~~~~~~Gi~~~~iil-DP 171 (257)
T TIGR01496 147 LRFLEARAEELVAAGVAAERIIL-DP 171 (257)
T ss_pred HHHHHHHHHHHHHcCCCHHHEEE-EC
Confidence 25667777778888973 4444 44
No 110
>PRK06801 hypothetical protein; Provisional
Probab=94.82 E-value=4 Score=43.14 Aligned_cols=181 Identities=19% Similarity=0.166 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh----hH-HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+.+.-.+.+...|=-.+|.... +. ...++.+++.. -+|+..=|=-+ ..+.++.|++
T Consensus 25 ~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~---------~vpV~lHlDH~~~~e~i~~Ai~ 95 (286)
T PRK06801 25 VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARH---------DIPVVLNLDHGLHFEAVVRALR 95 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 4688999999999999999977554543321 11 24455555532 13433333322 2455666665
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccC---------CCCCCHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED---------AGRSDRKF 235 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~ed---------a~r~d~e~ 235 (623)
. |+..|.+=.| ..+.+|+++..++.+++|+.+|.. |+- +.++ ...++|+.
T Consensus 96 ~----GftSVm~D~S----------~l~~eeNi~~t~~v~~~a~~~gv~-VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~ 160 (286)
T PRK06801 96 L----GFSSVMFDGS----------TLEYEENVRQTREVVKMCHAVGVS-VEAELGAVGGDEGGALYGEADSAKFTDPQL 160 (286)
T ss_pred h----CCcEEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEeecCcccCCCCCcccCCcccccCCCHHH
Confidence 4 8888765332 236789999999999999999975 532 1111 12567777
Q ss_pred HHHHHHHHHHcCCcEEeecCccccc------CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 006969 236 LYEILGEVIKVGATTLNIPDTVGIT------MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~DTvG~~------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 309 (623)
+.+++++ .|+|.+.+ ++|.. .|.-=.++++.+++.++ +||.+|. ..|....|...++.+|++-
T Consensus 161 a~~f~~~---tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~----~PLVlHG--GSgi~~e~~~~~i~~Gi~K 229 (286)
T PRK06801 161 ARDFVDR---TGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG----LPLVLHG--GSGISDADFRRAIELGIHK 229 (286)
T ss_pred HHHHHHH---HCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC----CCEEEEC--CCCCCHHHHHHHHHcCCcE
Confidence 7666654 59998887 33322 23223346667777663 6787665 4577889999999999999
Q ss_pred EEe
Q 006969 310 VEV 312 (623)
Q Consensus 310 Vd~ 312 (623)
|+.
T Consensus 230 INv 232 (286)
T PRK06801 230 INF 232 (286)
T ss_pred EEe
Confidence 854
No 111
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=94.77 E-value=4.1 Score=40.94 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhHcCCCEEEEe-cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 006969 101 KEKLDIARQLAKLGVDIIEAG-FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvG-fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~ 178 (623)
++-.++++.+.+.|.|.|++| +=...++.. +.++.+.+... .|.+. + ..+...+-+ +++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~---------lPvil-f-p~~~~~i~~--------~aD 71 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITN---------LPVIL-F-PGNVNGLSR--------YAD 71 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcC---------CCEEE-E-CCCccccCc--------CCC
Confidence 566779999999999999997 432333333 34555555321 13332 1 222222221 344
Q ss_pred EEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCC-----eEEEccc-------C---CCCCCHHHHHHHHHH
Q 006969 179 RIHTFIATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCD-----DVEFSPE-------D---AGRSDRKFLYEILGE 242 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~-~t~ee~l~~~~~~v~~ak~~G~~-----~V~f~~e-------d---a~r~d~e~l~~~~~~ 242 (623)
.+-+. + .|| ..++..+..=.+.+-..|+.|.+ ++.+++. + .-+.+++.....+.+
T Consensus 72 ~~~~~-s--------llns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~a 142 (205)
T TIGR01769 72 AVFFM-S--------LLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLA 142 (205)
T ss_pred EEEEE-E--------eecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHH
Confidence 43221 1 111 22333334333444445777754 2334443 1 123578899999999
Q ss_pred HHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 243 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 243 ~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+...|++.|+|-|..|...|-. .++++.+++.+. . .+.+++-.++ ...+..++.+||+.|
T Consensus 143 a~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~~-~-Pv~vGGGIrs-----~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 143 AKYFGMKWVYLEAGSGASYPVN-PETISLVKKASG-I-PLIVGGGIRS-----PEIAYEIVLAGADAI 202 (205)
T ss_pred HHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhhC-C-CEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 9999999999999988853322 566777776652 1 1444432222 234445557888876
No 112
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.77 E-value=1.8 Score=43.50 Aligned_cols=157 Identities=21% Similarity=0.263 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-+.++-+++++.|.+.|++.||+.+ .++...+.++.+.+..+.. ..|-+=+-...++++.++++ |.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~--~~~~~~~~i~~l~~~~~~~--------~~iGaGTV~~~~~~~~a~~a----GA 84 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPL--NSPDPFDSIAALVKALGDR--------ALIGAGTVLSPEQVDRLADA----GG 84 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCccHHHHHHHHHHHcCCC--------cEEeEEecCCHHHHHHHHHc----CC
Confidence 3889999999999999999999986 4556667888888754321 11222223467788887775 88
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee-cCc
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI-PDT 256 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l-~DT 256 (623)
+-++. +..+ .+.+++++..|.. +..++ .+++.+ ..+.++|+|.|.+ |.
T Consensus 85 ~fivs--p~~~------------------~~v~~~~~~~~~~-~~~G~-----~t~~E~----~~A~~~Gad~vk~Fpa- 133 (206)
T PRK09140 85 RLIVT--PNTD------------------PEVIRRAVALGMV-VMPGV-----ATPTEA----FAALRAGAQALKLFPA- 133 (206)
T ss_pred CEEEC--CCCC------------------HHHHHHHHHCCCc-EEccc-----CCHHHH----HHHHHcCCCEEEECCC-
Confidence 77664 3332 1456677777764 33333 333433 4466789999875 41
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 257 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 257 vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+..-|.. ++.++..+|. ++|+..= -|.-..|.-.-+++||+.|
T Consensus 134 -~~~G~~~----l~~l~~~~~~--~ipvvai----GGI~~~n~~~~~~aGa~~v 176 (206)
T PRK09140 134 -SQLGPAG----IKALRAVLPP--DVPVFAV----GGVTPENLAPYLAAGAAGF 176 (206)
T ss_pred -CCCCHHH----HHHHHhhcCC--CCeEEEE----CCCCHHHHHHHHHCCCeEE
Confidence 1223554 4445555541 1334322 3677789999999999986
No 113
>PRK06267 hypothetical protein; Provisional
Probab=94.73 E-value=3.1 Score=45.15 Aligned_cols=206 Identities=13% Similarity=0.140 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEE--EEecCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHh
Q 006969 97 TLTSKEKLDIARQLAKLGVDII--EAGFPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~I--EvGfP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
.++.++.++-++.+.+.|++.+ -.|++ ....+. +.++.+.+. .. . ......++....+... ..
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~-~~~~el~~i~e~I~~~-~~-------~-~~~~s~G~~d~~~~~~----~~ 127 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEFISGGYG-YTTEEINDIAEMIAYI-QG-------C-KQYLNVGIIDFLNINL----NE 127 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCC-CCHHHHHHHHHHHHHh-hC-------C-ceEeecccCCHHHHhh----cc
Confidence 4689999999999999999843 33555 333333 233333221 11 1 1111223222222211 11
Q ss_pred cCCCCEEEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 174 YAKRPRIHTFIATSGIHMEHKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~~l--~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
.+| +....-+.+-....++ +.+ ++...+.++.+++.|++ +..+..-+..-..+.+.+.++.+.+.+++.+
T Consensus 128 l~G---v~g~~ET~~~~~~~~i~~~~s----~ed~~~~l~~ak~aGi~-v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v 199 (350)
T PRK06267 128 IEG---VVGAVETVNPKLHREICPGKP----LDKIKEMLLKAKDLGLK-TGITIILGLGETEDDIEKLLNLIEELDLDRI 199 (350)
T ss_pred ccC---ceeeeecCCHHHHHhhCCCCC----HHHHHHHHHHHHHcCCe-eeeeEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 123 2223333322222233 344 44555788899999986 4332221112346778888999999998865
Q ss_pred e------ecCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE--EeccCCccC
Q 006969 252 N------IPDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV--EVTINGIGE 319 (623)
Q Consensus 252 ~------l~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V--d~Tv~GlGE 319 (623)
. .++| .-...|+++.++|..+|-.+|..+ ++.+. . -+.+...+ .++.+||+.| =--..+++.
T Consensus 200 ~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~-I~~~~-~-~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt 273 (350)
T PRK06267 200 TFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFPKIK-IITGT-W-VDKLTNIG---PLIMSGSNVITKFPLFSMYGT 273 (350)
T ss_pred EEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCC-cchhh-H-hHhcchhh---HHhhcCcceeeccchhccCcc
Confidence 4 3455 234677999999999999998643 33331 0 01111111 2566898887 224455567
Q ss_pred ccCcccHHHHH
Q 006969 320 RAGNASLEEVV 330 (623)
Q Consensus 320 RaGNa~lEevv 330 (623)
..|...-+++-
T Consensus 274 ~~g~~~~~~~~ 284 (350)
T PRK06267 274 KEGKRVENEIR 284 (350)
T ss_pred cCCCCHHHHHH
Confidence 77777666643
No 114
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=94.70 E-value=1.1 Score=47.93 Aligned_cols=159 Identities=15% Similarity=0.161 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe--cCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhc
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG--FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 174 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ 174 (623)
.|+.++.++ .+++.|+..|-+. =|-..|+=.+.++.+.+. +....++.=+ -.++..++.++.
T Consensus 58 ~ls~ee~~~---~i~e~g~~~V~i~GGEPLL~pdl~eiv~~~~~~---------g~~v~l~TNG----~ll~~~~~~l~~ 121 (318)
T TIGR03470 58 RLSVEECLR---AVDECGAPVVSIPGGEPLLHPEIDEIVRGLVAR---------KKFVYLCTNA----LLLEKKLDKFEP 121 (318)
T ss_pred CCCHHHHHH---HHHHcCCCEEEEeCccccccccHHHHHHHHHHc---------CCeEEEecCc----eehHHHHHHHHh
Confidence 467776554 4567898876663 365555444556655442 1112232211 122233444555
Q ss_pred CCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee
Q 006969 175 AKRPRIHTFI-ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 175 a~~~~v~i~~-~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
++...|.+.+ +..+.|-... ..+..++.+.+.++.+++.|+. |.+...-..+.+++.+.++++.+.+.|++.+.+
T Consensus 122 ~~~~~i~VSLDG~~e~hd~~~---~~~g~f~~~l~~I~~l~~~G~~-v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i 197 (318)
T TIGR03470 122 SPYLTFSVHLDGLREHHDASV---CREGVFDRAVEAIREAKARGFR-VTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTI 197 (318)
T ss_pred CCCcEEEEEEecCchhhchhh---cCCCcHHHHHHHHHHHHHCCCc-EEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5666665543 3334554432 2234678888999999999985 655432224678999999999999999988877
Q ss_pred c---------CcccccCHHHHHHHHHHHHHh
Q 006969 254 P---------DTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 254 ~---------DTvG~~~P~~v~~li~~l~~~ 275 (623)
. |.--.+.+.++.++++.+.+.
T Consensus 198 ~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 198 SPGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred ecCcccccccccccccCHHHHHHHHHHHHhh
Confidence 2 222245677888888777653
No 115
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=94.69 E-value=3.9 Score=43.12 Aligned_cols=184 Identities=17% Similarity=0.129 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----hH-HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 169 (623)
.++.+.-..+.+.-.+.+.+.|=.-+|.... .. ...++.+++... .+|...-+..+ ..+.++.++
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~vpv~lhlDH~~~~e~i~~ai 94 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS--------IVPVALHLDHGSSYESCIKAI 94 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC--------CCeEEEECCCCCCHHHHHHHH
Confidence 4578889999999999999988665554321 11 244455554321 13444333332 234445555
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--cc----cC------CCCCCHHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SP----ED------AGRSDRKFLY 237 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f--~~----ed------a~r~d~e~l~ 237 (623)
+. |+..|.+=.+ ..+.+|+++..++.+++++..|.. |+. +. || .+-++++.+.
T Consensus 95 ~~----Gf~sVmid~s----------~l~~~eni~~t~~v~~~a~~~gv~-Ve~ElG~~gg~ed~~~g~~~~~t~~eea~ 159 (282)
T TIGR01859 95 KA----GFSSVMIDGS----------HLPFEENLALTKKVVEIAHAKGVS-VEAELGTLGGIEDGVDEKEAELADPDEAE 159 (282)
T ss_pred Hc----CCCEEEECCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCcCccccccccccccCCHHHHH
Confidence 43 8887755332 237889999999999999999974 653 22 22 4466888776
Q ss_pred HHHHHHHHcCCcEEeec-Cc-cccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 238 EILGEVIKVGATTLNIP-DT-VGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l~-DT-vG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
++.+ +.|+|.|.+. -| -|.. .|.-=-++++.+++.++ +||-. |...|+-.-|...++++|++.|..
T Consensus 160 ~f~~---~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~----iPlv~--hGgSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 160 QFVK---ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN----IPLVL--HGASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred HHHH---HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC----CCEEE--ECCCCCCHHHHHHHHHcCCCEEEE
Confidence 6554 3489887742 11 1111 12222446677777763 56764 556688889999999999998754
No 116
>PRK12928 lipoyl synthase; Provisional
Probab=94.63 E-value=0.79 Score=48.45 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=101.2
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCC--Ch----hH-HHHHHHHHHHhccccccCCCccceEEeecccchhhHHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAA--SK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~--s~----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (623)
...++.++-++.++.+.+.|+++|-+..... .+ .. .+.++.|.+..+. ..|..+.......+..
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~---------~~I~~ltp~~~~~~~e 154 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPG---------TGIEVLTPDFWGGQRE 154 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCC---------CEEEEeccccccCCHH
Confidence 4568999999999999999999887743211 11 11 2455555443211 1344443211110334
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CCeEEEcccCCCCCCHHHHHHHHHHHHH
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG--CDDVEFSPEDAGRSDRKFLYEILGEVIK 245 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G--~~~V~f~~eda~r~d~e~l~~~~~~~~~ 245 (623)
.++.++.+|...+..++.++| .+..+++.. ...+...+.++.+++.| +. +.-+..-+.--+.+...+.++.+.+
T Consensus 155 ~L~~l~~Ag~~i~~hnlEt~~-~vl~~m~r~--~t~e~~le~l~~ak~~gp~i~-~~s~iIvG~GET~ed~~etl~~Lre 230 (290)
T PRK12928 155 RLATVLAAKPDVFNHNLETVP-RLQKAVRRG--ADYQRSLDLLARAKELAPDIP-TKSGLMLGLGETEDEVIETLRDLRA 230 (290)
T ss_pred HHHHHHHcCchhhcccCcCcH-HHHHHhCCC--CCHHHHHHHHHHHHHhCCCce-ecccEEEeCCCCHHHHHHHHHHHHh
Confidence 466677778777776666765 444455432 23455667888899988 43 2212222223455778899999999
Q ss_pred cCCcEEeec----------CcccccCHHHHHHHHHHHH
Q 006969 246 VGATTLNIP----------DTVGITMPTEFGKLIADIK 273 (623)
Q Consensus 246 aGa~~I~l~----------DTvG~~~P~~v~~li~~l~ 273 (623)
.|.+.+.+- --..+.+|+++.++=..-.
T Consensus 231 l~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~ 268 (290)
T PRK12928 231 VGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIAR 268 (290)
T ss_pred cCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHH
Confidence 999988872 2456778888887655444
No 117
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=94.59 E-value=4.1 Score=41.43 Aligned_cols=185 Identities=14% Similarity=0.086 Sum_probs=105.5
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeec--cc----chhhHHHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS--RC----NERDIKTA 168 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~--r~----~~~dI~~a 168 (623)
.-..|.++..++.+...+.|+.-+-+ +|. +++...+.+.+.- ..+..+.+|- .. ....++.|
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv-~p~-------~v~~a~~~l~~~~----v~v~tVigFP~G~~~~~~K~~e~~~A 83 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCV-NPS-------YVKLAAELLKGSD----VKVCTVIGFPLGANTTAVKAFEAKDA 83 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEE-CHH-------HHHHHHHHhCCCC----CeEEEEecccCCCChHHHHHHHHHHH
Confidence 34679999999999999999988888 342 3444444432210 1122333331 11 11122333
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCC
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa 248 (623)
++ .|++.|.+.+..+-+. .-..+++.+.+.+..+.+ .+. .+-+-.| ....+.+.+.++++.+.++|+
T Consensus 84 i~----~GA~EiD~Vin~~~~~-----~g~~~~v~~ei~~v~~~~--~~~-~lKvIlE-t~~L~~e~i~~a~~~~~~aga 150 (221)
T PRK00507 84 IA----NGADEIDMVINIGALK-----SGDWDAVEADIRAVVEAA--GGA-VLKVIIE-TCLLTDEEKVKACEIAKEAGA 150 (221)
T ss_pred HH----cCCceEeeeccHHHhc-----CCCHHHHHHHHHHHHHhc--CCc-eEEEEee-cCcCCHHHHHHHHHHHHHhCC
Confidence 33 4889999887665321 113556666666555543 343 2444333 334556778999999999999
Q ss_pred cEEeecCcc--cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 249 TTLNIPDTV--GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 249 ~~I~l~DTv--G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
|.|--.-+. |.++|+.+.-+-+.+..+++ +..+==.++ ...++.-+++||++|-+|
T Consensus 151 dfIKTsTG~~~~gat~~~v~~m~~~~~~~~~----IKasGGIrt-----~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 151 DFVKTSTGFSTGGATVEDVKLMRETVGPRVG----VKASGGIRT-----LEDALAMIEAGATRLGTS 208 (221)
T ss_pred CEEEcCCCCCCCCCCHHHHHHHHHHhCCCce----EEeeCCcCC-----HHHHHHHHHcCcceEccC
Confidence 966655554 45677766655554432221 221111111 566788889999998443
No 118
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.57 E-value=1.7 Score=43.51 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-+.++-+++++.|.+.|++.||+.| .+|+-++.++.+++..+. ..|-+=+-.+.++.+.++++ |.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~--~tp~a~~~I~~l~~~~~~---------~~vGAGTVl~~e~a~~ai~a----GA 77 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITL--RTPAALDAIRAVAAEVEE---------AIVGAGTILNAKQFEDAAKA----GS 77 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCccHHHHHHHHHHHCCC---------CEEeeEeCcCHHHHHHHHHc----CC
Confidence 3789999999999999999999987 467777888888875422 12222233467788877775 66
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 257 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv 257 (623)
+-+ +.|..+ .+.+++++++|+. +-|- -.+|..+ ..+.++|++.|-+
T Consensus 78 ~Fi--vSP~~~------------------~~vi~~a~~~~i~---~iPG---~~TptEi----~~A~~~Ga~~vK~---- 123 (201)
T PRK06015 78 RFI--VSPGTT------------------QELLAAANDSDVP---LLPG---AATPSEV----MALREEGYTVLKF---- 123 (201)
T ss_pred CEE--ECCCCC------------------HHHHHHHHHcCCC---EeCC---CCCHHHH----HHHHHCCCCEEEE----
Confidence 543 222211 2678899999875 3332 2333322 3466899998875
Q ss_pred cccCHH-HH--HHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCC
Q 006969 258 GITMPT-EF--GKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 308 (623)
Q Consensus 258 G~~~P~-~v--~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~ 308 (623)
.|. .+ -.+++.++.-+|+. ++- -.-|...-|.-.-+.+|+.
T Consensus 124 ---FPa~~~GG~~yikal~~plp~~---~l~----ptGGV~~~n~~~~l~ag~~ 167 (201)
T PRK06015 124 ---FPAEQAGGAAFLKALSSPLAGT---FFC----PTGGISLKNARDYLSLPNV 167 (201)
T ss_pred ---CCchhhCCHHHHHHHHhhCCCC---cEE----ecCCCCHHHHHHHHhCCCe
Confidence 332 22 26788888888753 333 3457777899999999865
No 119
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.42 E-value=1.1 Score=45.56 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-+.++-+++++.|.+.|++.||+.| .+|.-.+.++.+.+..+...++ ..|-+=+-.+.++.+.++++ |.
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~--~tp~a~~~i~~l~~~~~~~~p~-----~~vGaGTVl~~e~a~~a~~a----GA 92 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN--RGDFAHEVFAELVKYAAKELPG-----MILGVGSIVDAATAALYIQL----GA 92 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCCcHHHHHHHHHHHHHhhCCC-----eEEeeEeCcCHHHHHHHHHc----CC
Confidence 4789999999999999999999988 3455566777776433221111 12222233467788887775 66
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee--cC
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 255 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l--~D 255 (623)
+-+ +.|..+ .+.+++++++|+. +-|- -.+|..+ ..+.++|++.|-| ++
T Consensus 93 ~Fi--VsP~~~------------------~~v~~~~~~~~i~---~iPG---~~TpsEi----~~A~~~Ga~~vKlFPA~ 142 (222)
T PRK07114 93 NFI--VTPLFN------------------PDIAKVCNRRKVP---YSPG---CGSLSEI----GYAEELGCEIVKLFPGS 142 (222)
T ss_pred CEE--ECCCCC------------------HHHHHHHHHcCCC---EeCC---CCCHHHH----HHHHHCCCCEEEECccc
Confidence 543 222221 2678899999875 3332 2333322 3466899998765 35
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH--HHHHHHHHhCCCEE
Q 006969 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST--ANTIAGACAGARQV 310 (623)
Q Consensus 256 TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv--ANslaAv~aGA~~V 310 (623)
+.| |. +++.|+.-+|+++ +- -.-|... .|.-.-+.+|+..|
T Consensus 143 ~~G---~~----~ikal~~p~p~i~---~~----ptGGV~~~~~n~~~yl~aGa~av 185 (222)
T PRK07114 143 VYG---PG----FVKAIKGPMPWTK---IM----PTGGVEPTEENLKKWFGAGVTCV 185 (222)
T ss_pred ccC---HH----HHHHHhccCCCCe---EE----eCCCCCcchhcHHHHHhCCCEEE
Confidence 444 43 6667776677532 22 2456655 67888888997765
No 120
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.40 E-value=3.1 Score=41.49 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCc-cceEEeecccc------hhhHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGLSRCN------ERDIKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~------~~dI~~a~ 169 (623)
..+.++..++.+...+.|++-+-+ .| . +++...+.+.+. .+ +....+|-... ...++.|+
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v-~p----~---~v~~~~~~l~~~-----~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCV-NP----C---FVPLAREALKGS-----GVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-cH----H---HHHHHHHHcCCC-----CcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 358999999999999999999988 33 2 333333332221 11 11122222211 11233333
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCc
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~ 249 (623)
+ .|++.|.+.+.... ......+++++.+.+.++.+. |.. +-+-.|. ...+++.+...++.+.++|||
T Consensus 80 ~----~GAdevdvv~~~g~-----~~~~~~~~~~~ei~~v~~~~~--g~~-lkvI~e~-~~l~~~~i~~a~ria~e~GaD 146 (203)
T cd00959 80 A----DGADEIDMVINIGA-----LKSGDYEAVYEEIAAVVEACG--GAP-LKVILET-GLLTDEEIIKACEIAIEAGAD 146 (203)
T ss_pred H----cCCCEEEEeecHHH-----HhCCCHHHHHHHHHHHHHhcC--CCe-EEEEEec-CCCCHHHHHHHHHHHHHhCCC
Confidence 3 48999988776542 112344667888888888776 543 3232332 233578999999999999999
Q ss_pred EEeec--CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 250 TLNIP--DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 250 ~I~l~--DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.|-.. =+.+.++|..+..+-+.++..+| +.+.==.+ + ...++.-+++||++|-
T Consensus 147 ~IKTsTG~~~~~at~~~v~~~~~~~~~~v~----ik~aGGik-t----~~~~l~~~~~g~~riG 201 (203)
T cd00959 147 FIKTSTGFGPGGATVEDVKLMKEAVGGRVG----VKAAGGIR-T----LEDALAMIEAGATRIG 201 (203)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHhCCCce----EEEeCCCC-C----HHHHHHHHHhChhhcc
Confidence 98876 22244577777766666652221 33331122 2 4566777788888764
No 121
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.40 E-value=3.2 Score=43.62 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=81.1
Q ss_pred ceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHc-CCC-eEEEcccCC
Q 006969 152 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIH-MEHKLRKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDA 228 (623)
Q Consensus 152 ~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h-~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~-~V~f~~eda 228 (623)
|.+.-+.-...++...+.+.+..+|.+.|.+-++..... .-..++.+. +.+.+.++.+|+. ++. .|-+++.
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~----~~~~eiv~~vr~~~~~Pv~vKl~~~-- 164 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDP----EAVAEIVKAVKKATDVPVIVKLTPN-- 164 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCH----HHHHHHHHHHHhccCCCEEEEeCCC--
Confidence 334444334567777777777778899877754432110 011233333 4445556666655 443 1233442
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCcccccC-------------------H---HHHHHHHHHHHHhCCCCcceeEEE
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITM-------------------P---TEFGKLIADIKANTPGIENVVIST 286 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~-------------------P---~~v~~li~~l~~~~~~~~~v~i~~ 286 (623)
.+...++++.+.++|+|.|.+-+|.+... | ....++++.+++.++ ++|..
T Consensus 165 ----~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~----ipii~ 236 (296)
T cd04740 165 ----VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE----IPIIG 236 (296)
T ss_pred ----chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC----CCEEE
Confidence 23577888999999999998866543221 1 113366777777652 33432
Q ss_pred eecCCcch-HHHHHHHHHHhCCCEEEec
Q 006969 287 HCQNDLGL-STANTIAGACAGARQVEVT 313 (623)
Q Consensus 287 H~HND~Gl-AvANslaAv~aGA~~Vd~T 313 (623)
.-|. --..+..++++||+.|..+
T Consensus 237 ----~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 237 ----VGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred ----ECCCCCHHHHHHHHHcCCCEEEEc
Confidence 1232 2367778888898887654
No 122
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.26 E-value=4.7 Score=42.11 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=56.0
Q ss_pred ceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC-eEEEcccCCC
Q 006969 152 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDAG 229 (623)
Q Consensus 152 ~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~-~V~f~~eda~ 229 (623)
|.+..+.-...+++..+.+.+..+|++.|.+-++....-....+... .+.+.+.++.+|+. ++. .|-.++
T Consensus 100 pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~----~~~~~eiv~~vr~~~~~pv~vKl~~---- 171 (289)
T cd02810 100 PLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQD----PEAVANLLKAVKAAVDIPLLVKLSP---- 171 (289)
T ss_pred eEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccC----HHHHHHHHHHHHHccCCCEEEEeCC----
Confidence 33433333356777777777777788887776543321111111222 23344445555543 333 122344
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCcc
Q 006969 230 RSDRKFLYEILGEVIKVGATTLNIPDTV 257 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~aGa~~I~l~DTv 257 (623)
-.+.+...++++.+.++|+|.|.+..|.
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 2456788899999999999999987664
No 123
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.23 E-value=5.7 Score=41.95 Aligned_cols=182 Identities=20% Similarity=0.251 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+++.-.+.+-+.|=-.+|.... .+ ...++.+++... +|...=|-.+ ..+++.+|++
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~---------vPV~lHLDH~~~~e~i~~Ai~ 95 (283)
T PRK07998 25 TTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMD---------VPVSLHLDHGKTFEDVKQAVR 95 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCC---------CCEEEECcCCCCHHHHHHHHH
Confidence 4578888899999999999988665664321 11 245555555421 2433333333 3456666665
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE--E----cccCC------CCCCHHHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--F----SPEDA------GRSDRKFLYE 238 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~--f----~~eda------~r~d~e~l~~ 238 (623)
+ |...|.+=. | ..+.||+++..++.+++|+..|+. |+ . +.||. ..|+|+.+.+
T Consensus 96 ~----GftSVM~Dg--S--------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~~T~pe~a~~ 160 (283)
T PRK07998 96 A----GFTSVMIDG--A--------ALPFEENIAFTKEAVDFAKSYGVP-VEAELGAILGKEDDHVSEADCKTEPEKVKD 160 (283)
T ss_pred c----CCCEEEEeC--C--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEeccCCCccccccccccccCCHHHHHH
Confidence 4 888876532 2 247889999999999999999985 53 2 33332 2578988876
Q ss_pred HHHHHHHcCCcEEeec--CcccccC-HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 239 ILGEVIKVGATTLNIP--DTVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~--DTvG~~~-P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
+++ +.|+|.+-++ -.=|.-. |.-=.++++.+++.++ +||.+|+= .|...-....|+..|+.-|+
T Consensus 161 Fv~---~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~----vPLVlHGg--SG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 161 FVE---RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP----VPLVIHGG--SGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred HHH---HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCC----CCEEEeCC--CCCCHHHHHHHHHcCCcEEE
Confidence 665 4588765543 1112111 4432477888888763 67887764 56777778899999988774
No 124
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=94.21 E-value=1.1 Score=48.92 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH-----HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHH
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 171 (623)
+.++-+++|+.|.+.|+.++=.|+ |.++|..| +..+.+.+..... |+ +.++. -....+++.+.+.
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~-----Gl-~~~t~--v~d~~~~~~l~~~ 201 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEY-----GL-AVISE--IVNPADVEVALDY 201 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHc-----CC-CEEEe--eCCHHHHHHHHHh
Confidence 689999999999999999998874 67666432 3344443332111 22 22221 1244555554442
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
++.+.| +..+... .+.++++.+.|.. |.++- +...+++.+...++.+.+.|...|
T Consensus 202 -----vd~lkI--~s~~~~n---------------~~LL~~~a~~gkP-Vilk~--G~~~t~~e~~~Ave~i~~~Gn~~i 256 (360)
T PRK12595 202 -----VDVIQI--GARNMQN---------------FELLKAAGRVNKP-VLLKR--GLSATIEEFIYAAEYIMSQGNGQI 256 (360)
T ss_pred -----CCeEEE--CcccccC---------------HHHHHHHHccCCc-EEEeC--CCCCCHHHHHHHHHHHHHCCCCCE
Confidence 444433 4433211 2566667777875 77753 223678888888888889999889
Q ss_pred eecC--cccccCH--HHH-HHHHHHHHHhCCCCcceeEEE-eecCCcc---hHHHHHHHHHHhCCC--EEEecc
Q 006969 252 NIPD--TVGITMP--TEF-GKLIADIKANTPGIENVVIST-HCQNDLG---LSTANTIAGACAGAR--QVEVTI 314 (623)
Q Consensus 252 ~l~D--TvG~~~P--~~v-~~li~~l~~~~~~~~~v~i~~-H~HND~G---lAvANslaAv~aGA~--~Vd~Tv 314 (623)
.||. |..+-+| +.+ -..|..+++.+. +|+++ =.|- .| +...-+++|+.+||+ .|+.=.
T Consensus 257 ~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~----~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 257 ILCERGIRTYEKATRNTLDISAVPILKQETH----LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred EEECCccCCCCCCCCCCcCHHHHHHHHHHhC----CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 9987 2222212 211 123556676553 45776 3443 55 777799999999996 566555
No 125
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.16 E-value=5.1 Score=40.00 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H-----------------HHHHHHHHHHhccccccCCCccceEEeeccc
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D-----------------FEAVRTIAKEVGNAVDAESGYVPVICGLSRC 160 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d-----------------~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 160 (623)
+.++-.+|.+.|+..|.|+||.|.|.+.|- | ++.+-.+.++..+. |+..-|.-++-.
T Consensus 30 ~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~-----gvt~PIiLmgYY 104 (268)
T KOG4175|consen 30 DVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ-----GVTCPIILMGYY 104 (268)
T ss_pred cHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhccc-----Ccccceeeeecc
Confidence 567889999999999999999999866541 1 11111111111111 221112222222
Q ss_pred c---hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHH
Q 006969 161 N---ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 237 (623)
Q Consensus 161 ~---~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~ 237 (623)
+ ..+.++-++..+.+|+..+-+.. ..+| .+...-.+++++|+..|-. ...+.++.-+
T Consensus 105 NPIl~yG~e~~iq~ak~aGanGfiivD------------lPpE----Ea~~~Rne~~k~gislvpL----vaPsTtdeRm 164 (268)
T KOG4175|consen 105 NPILRYGVENYIQVAKNAGANGFIIVD------------LPPE----EAETLRNEARKHGISLVPL----VAPSTTDERM 164 (268)
T ss_pred cHHHhhhHHHHHHHHHhcCCCceEecc------------CChH----HHHHHHHHHHhcCceEEEe----eCCCChHHHH
Confidence 2 22344444445556776554431 2233 3445668999999753322 2234444444
Q ss_pred HHHHHHHHcCCcEEeecCcccccC-----HHHHHHHHHHHHHhCCC
Q 006969 238 EILGEVIKVGATTLNIPDTVGITM-----PTEFGKLIADIKANTPG 278 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l~DTvG~~~-----P~~v~~li~~l~~~~~~ 278 (623)
+++-.+.+ .-|++.-.+|..- -..+.+|+..+|+...+
T Consensus 165 ell~~~ad---sFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~d 207 (268)
T KOG4175|consen 165 ELLVEAAD---SFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGD 207 (268)
T ss_pred HHHHHhhc---ceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 54444433 4566766666552 34466788888887643
No 126
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.15 E-value=6.7 Score=41.45 Aligned_cols=182 Identities=18% Similarity=0.157 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChh----H--HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE----D--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~----d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 169 (623)
.++.+.-..+.+.-.+.+.+.|=-.+|..... + ...++.+++.... -+|...=|=.+ ..+++.+|+
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~VPV~lHLDHg~~~e~i~~ai 97 (285)
T PRK07709 25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI-------TVPVAIHLDHGSSFEKCKEAI 97 (285)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCC-------CCcEEEECCCCCCHHHHHHHH
Confidence 46889999999999999999775555543221 1 1345555553210 02443333333 234555555
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC------CCCCHHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKFLY 237 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda------~r~d~e~l~ 237 (623)
++ |...|.+=.| ..+.+||++..++.+++|+..|.. |+- +.||. ..|+|+...
T Consensus 98 ~~----GftSVM~DgS----------~lp~eeNi~~Trevv~~Ah~~gv~-VEaElG~igg~ed~~~~~~~~yT~peeA~ 162 (285)
T PRK07709 98 DA----GFTSVMIDAS----------HHPFEENVETTKKVVEYAHARNVS-VEAELGTVGGQEDDVIAEGVIYADPAECK 162 (285)
T ss_pred Hc----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeccCCccCCcccccccCCCHHHHH
Confidence 54 8887754332 246799999999999999999984 542 33332 158999888
Q ss_pred HHHHHHHHcCCcEEeecCccccc------CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 238 EILGEVIKVGATTLNIPDTVGIT------MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l~DTvG~~------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
+++++ -|+|.+-+ ++|.. .|.-=.++++.+++.++ +||.+|+ ..|+.-..-..|+..|+.-|+
T Consensus 163 ~Fv~~---TgvD~LAv--aiGt~HG~Y~~~p~L~~~~L~~I~~~~~----iPLVLHG--gSG~~~e~~~~ai~~Gi~KiN 231 (285)
T PRK07709 163 HLVEA---TGIDCLAP--ALGSVHGPYKGEPNLGFAEMEQVRDFTG----VPLVLHG--GTGIPTADIEKAISLGTSKIN 231 (285)
T ss_pred HHHHH---hCCCEEEE--eecccccCcCCCCccCHHHHHHHHHHHC----CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 77764 48886555 33322 35444467788888763 6788766 477777888899999988764
No 127
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.11 E-value=4.8 Score=43.63 Aligned_cols=202 Identities=19% Similarity=0.177 Sum_probs=120.8
Q ss_pred cccCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhccccccCCCccceEEeeccc
Q 006969 88 RDGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC 160 (623)
Q Consensus 88 RDG~Q~~g--~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 160 (623)
|.+.+.-+ ..++.+.-..+++.-.+.+...|=--+|.... .+ ...++.+++... -+|...=|=-+
T Consensus 14 ~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~--------~VPValHLDHg 85 (347)
T PRK09196 14 AEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP--------HIPVVMHQDHG 85 (347)
T ss_pred HHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC--------CCcEEEECCCC
Confidence 34444443 35688999999999999999977554554321 11 133333443210 12433322222
Q ss_pred -chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccc-------
Q 006969 161 -NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPE------- 226 (623)
Q Consensus 161 -~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~e------- 226 (623)
..+++.+++++ |...|.+=.|.-+ ..++..+.|||++..++.|++|+..|+. |+- +.|
T Consensus 86 ~~~e~i~~ai~~----GftSVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~Gv~-VEaELG~vgg~e~~~~g~~ 157 (347)
T PRK09196 86 NSPATCQRAIQL----GFTSVMMDGSLKA---DGKTPASYEYNVDVTRKVVEMAHACGVS-VEGELGCLGSLETGMGGEE 157 (347)
T ss_pred CCHHHHHHHHHc----CCCEEEecCCCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeccCccccccccc
Confidence 34455556554 8887754322110 1233457899999999999999999985 532 122
Q ss_pred C-----------CCCCCHHHHHHHHHHHHHcCCcEEeec--Cccccc----CHH---HHHHHHHHHHHhCCCCcceeEEE
Q 006969 227 D-----------AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT----MPT---EFGKLIADIKANTPGIENVVIST 286 (623)
Q Consensus 227 d-----------a~r~d~e~l~~~~~~~~~aGa~~I~l~--DTvG~~----~P~---~v~~li~~l~~~~~~~~~v~i~~ 286 (623)
| ...|+|+.+.++++ +-|+|.+-++ -.=|.. .|. -=.++++.+++.++ ++||.+
T Consensus 158 ~~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~---~vPLVL 231 (347)
T PRK09196 158 DGHGAEGKLSHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP---NTHLVM 231 (347)
T ss_pred cCcccccccchhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC---CCCEEE
Confidence 1 22678887777665 4588765543 222332 242 22346688888875 378999
Q ss_pred eecCCc-------------------chHHHHHHHHHHhCCCEEE
Q 006969 287 HCQNDL-------------------GLSTANTIAGACAGARQVE 311 (623)
Q Consensus 287 H~HND~-------------------GlAvANslaAv~aGA~~Vd 311 (623)
|.=... |....+-..|+..|+.-|+
T Consensus 232 HGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KIN 275 (347)
T PRK09196 232 HGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVN 275 (347)
T ss_pred eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEE
Confidence 986655 5566777788888877774
No 128
>PRK01060 endonuclease IV; Provisional
Probab=94.09 E-value=7.4 Score=40.21 Aligned_cols=206 Identities=11% Similarity=0.090 Sum_probs=97.1
Q ss_pred HHHHHHHhHcCCCEEEEec--C------CCChhHHHHHHHHHHHhccccccCCCccceEEeecccch-------hhHHHH
Q 006969 104 LDIARQLAKLGVDIIEAGF--P------AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-------RDIKTA 168 (623)
Q Consensus 104 l~Ia~~L~~~Gvd~IEvGf--P------~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~-------~dI~~a 168 (623)
.+.++.+.++|+|.||+-. | ..++++.+.++++.+..+-.+.......|-..-++-..+ +.+.++
T Consensus 15 ~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~ 94 (281)
T PRK01060 15 EGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQE 94 (281)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHH
Confidence 4567888999999999931 2 223344555665554322110000000010111111111 123344
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHH--HHcCCCeEEEcccC--CC----CCCHHHHHHHH
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFA--RSLGCDDVEFSPED--AG----RSDRKFLYEIL 240 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a--k~~G~~~V~f~~ed--a~----r~d~e~l~~~~ 240 (623)
++.....|++.|.+...... .....++.++.+.+.++.+ ...|+ .+..|- .. -.+++.+.+++
T Consensus 95 i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~gv---~l~iEn~~~~~~~~~~~~~~~~~l~ 165 (281)
T PRK01060 95 IERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQGV---TIVLENTAGQGSELGRRFEELARII 165 (281)
T ss_pred HHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCCC---EEEEecCCCCCCcccCCHHHHHHHH
Confidence 55555567776655432110 0112234666666666654 23443 333331 11 13566666666
Q ss_pred HHHHHcCCcE-Eeec-Cccc-----ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 241 GEVIKVGATT-LNIP-DTVG-----ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 241 ~~~~~aGa~~-I~l~-DTvG-----~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
+.+ +-.. +.+| ||.= .-.+....++++.+.+.++. +-...+|.||..+-. ..+.+ -+.
T Consensus 166 ~~v---~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~--~~i~~vHl~D~~~~~--------~~~~d-~H~- 230 (281)
T PRK01060 166 DGV---EDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGL--DRLKVMHLNDSKNEF--------GSRKD-RHA- 230 (281)
T ss_pred Hhc---CCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhCh--hheeEEEEecCCCcc--------cCCCC-ccc-
Confidence 554 2222 4333 5432 11123444666666654321 124678888865421 00111 011
Q ss_pred cCCccCccCcccHHHHHHHHHhcc
Q 006969 314 INGIGERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 314 v~GlGERaGNa~lEevv~~L~~~~ 337 (623)
-+| .|+.+.++++..|+..+
T Consensus 231 --~~G--~G~id~~~~~~~L~~~~ 250 (281)
T PRK01060 231 --NLG--EGTIGFDALRYIVHDPR 250 (281)
T ss_pred --CCc--CCcCCHHHHHHHHhCcc
Confidence 223 48899999999999765
No 129
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=93.81 E-value=4.8 Score=44.07 Aligned_cols=169 Identities=13% Similarity=0.093 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEe--cCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHh
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAG--FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
..++.++.+++++.+.+.|++.|-+. =|...++=.+.++.+.+.. ++ ..+...+ +---+...++.++
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~--------gi-~~i~itT--NG~lL~~~~~~L~ 156 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLK--------GL-KTLAMTT--NGITLSRKLPRLK 156 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcC--------CC-ceEEEee--CcchHHHHHHHHH
Confidence 35899999999999999999988773 3654443235555554321 11 1121111 1111223345677
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE--E
Q 006969 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT--L 251 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~--I 251 (623)
.+|+++|.+.+-+.+-....++... ..++.+.+.++.+++.|...|.++..-....+.+.+.++++.+.+.|+.. |
T Consensus 157 ~aGld~VnISLDsl~~e~~~~itr~--~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~vr~i 234 (373)
T PLN02951 157 EAGLTSLNISLDTLVPAKFEFLTRR--KGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINVRFI 234 (373)
T ss_pred hCCCCeEEEeeccCCHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 7899999887765532222222211 12467778889999998643444332112245577899999999988653 3
Q ss_pred eecCcccc--cC--HHHHHHHHHHHHHhCC
Q 006969 252 NIPDTVGI--TM--PTEFGKLIADIKANTP 277 (623)
Q Consensus 252 ~l~DTvG~--~~--P~~v~~li~~l~~~~~ 277 (623)
.+--.-|. .. +..+.++.+.+.+.++
T Consensus 235 e~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 235 EFMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred EcccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 23222222 11 1225667777766654
No 130
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=93.80 E-value=8.4 Score=40.88 Aligned_cols=185 Identities=18% Similarity=0.146 Sum_probs=118.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----hH-HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.++.+.-..+.+.-.+++.+.|=--+|.... +. ...++.+++.... -+|+..=|=-+..+.+..+++
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~-------~vPV~lHLDH~~~~~i~~ai~ 97 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGI-------TVPVAIHLDHGHYEDALECIE 97 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-------CCcEEEECCCCCHHHHHHHHH
Confidence 4678999999999999999987655553221 11 2445555554211 134443343343334444444
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC----CC-CCHHHHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA----GR-SDRKFLYEI 239 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda----~r-~d~e~l~~~ 239 (623)
+|+..|.+=.+ ..+.+|+++..++.+++|+..|.. |+- +-||. +. ++|+.+.++
T Consensus 98 ----~GftSVm~d~S----------~l~~eEni~~t~~v~~~a~~~gv~-vE~ElG~i~g~ed~~~g~s~~t~peea~~f 162 (293)
T PRK07315 98 ----VGYTSIMFDGS----------HLPVEENLKLAKEVVEKAHAKGIS-VEAEVGTIGGEEDGIIGKGELAPIEDAKAM 162 (293)
T ss_pred ----cCCCEEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEecCcccCcCccccCccCCCCHHHHHHH
Confidence 48887754322 246799999999999999999874 432 21332 23 788887665
Q ss_pred HHHHHHcCCcEEeec--Cccccc---CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 240 LGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 240 ~~~~~~aGa~~I~l~--DTvG~~---~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
. +.|+|.|.++ -.=|.. +|.-=-++++.+++.+++ +||-+|.- .|....|...+++.|++-|..
T Consensus 163 ~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~---iPlVlhGG--SGi~~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 163 V----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPG---FPIVLHGG--SGIPDDQIQEAIKLGVAKVNV 231 (293)
T ss_pred H----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccC---CCEEEECC--CCCCHHHHHHHHHcCCCEEEE
Confidence 5 4699988776 221221 243334577888887742 67876664 578889999999999998754
No 131
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=93.76 E-value=7.6 Score=41.00 Aligned_cols=196 Identities=11% Similarity=0.083 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.+..+.-.++++.|.+.||+.|=+ | |+.-+.+|+ +.++...+... +.+|.+++.+.+..+-++.+ +
T Consensus 22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-------g~~pvi~gv~~~t~~ai~~a-~ 93 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-------GKVPVYTGVGGNTSDAIEIA-R 93 (296)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-------CCCcEEEecCccHHHHHHHH-H
Confidence 378889999999999999999876 3 466666765 44455555432 23467777764333333433 3
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
....+|++.+-+.-|-. ++.+.+++++-..+.++. .++..+.|+. .+...+++.+.+++ +.-...
T Consensus 94 ~a~~~Gadav~~~pP~y-------~~~s~~~i~~~f~~v~~a---~~~pvilYn~-~g~~l~~~~~~~La----~~~~nv 158 (296)
T TIGR03249 94 LAEKAGADGYLLLPPYL-------INGEQEGLYAHVEAVCES---TDLGVIVYQR-DNAVLNADTLERLA----DRCPNL 158 (296)
T ss_pred HHHHhCCCEEEECCCCC-------CCCCHHHHHHHHHHHHhc---cCCCEEEEeC-CCCCCCHHHHHHHH----hhCCCE
Confidence 34567999886644421 345666666655555443 2344455662 23345666555544 434488
Q ss_pred EeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEE-eecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHH
Q 006969 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST-HCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEV 329 (623)
Q Consensus 251 I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~-H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEev 329 (623)
+.+.||.| .+..+.++++. .++ + +.+ -+|+- +-...+.++.+|++ +.+.| .+|.-.+.+
T Consensus 159 vgiKds~~--d~~~~~~~~~~----~~~--~--~~v~~G~~~---~d~~~~~~~~~Ga~---G~is~----~~n~~P~~~ 218 (296)
T TIGR03249 159 VGFKDGIG--DMEQMIEITQR----LGD--R--LGYLGGMPT---AEVTAPAYLPLGVT---SYSSA----IFNFIPHIA 218 (296)
T ss_pred EEEEeCCC--CHHHHHHHHHH----cCC--C--eEEEeCCCc---chhhHHHHHhCCCC---EEEec----HHHhhHHHH
Confidence 99999976 55566655433 332 1 222 23310 11234455678984 33444 567877777
Q ss_pred HHHHHh
Q 006969 330 VMAFKC 335 (623)
Q Consensus 330 v~~L~~ 335 (623)
+...+.
T Consensus 219 ~~~~~~ 224 (296)
T TIGR03249 219 RAFYEA 224 (296)
T ss_pred HHHHHH
Confidence 766654
No 132
>PRK09989 hypothetical protein; Provisional
Probab=93.69 E-value=2 Score=44.08 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=96.8
Q ss_pred HHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEee-------c-------ccc----hhhH
Q 006969 104 LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL-------S-------RCN----ERDI 165 (623)
Q Consensus 104 l~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~-------~-------r~~----~~dI 165 (623)
.+.++.+.++|+|.||+.+|.. .+.+.++.+.+.. |+.....+. . ... .+++
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~--~~~~~~~~~l~~~--------Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD--YSTLQIQKQLEQN--------HLTLALFNTAPGDINAGEWGLSALPGREHEARADI 87 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc--CCHHHHHHHHHHc--------CCcEEEeccCCCccCCCCCcccCCCccHHHHHHHH
Confidence 3566777888999999965432 2344455555432 221111110 0 000 2346
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCC----HHHHHHHHHHHHHHHHHcCCCeEEEccc------CCCCCCHHH
Q 006969 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT----KQQVVEIARSMVKFARSLGCDDVEFSPE------DAGRSDRKF 235 (623)
Q Consensus 166 ~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t----~ee~l~~~~~~v~~ak~~G~~~V~f~~e------da~r~d~e~ 235 (623)
+++++..+..|.+.|.++.+..+- +.+ .+...+.+.++.++|++.|+. +.+-+. +..-.+.+.
T Consensus 88 ~~~i~~A~~lg~~~v~v~~g~~~~------~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~l~~~~~~~~~~~~~~~ 160 (258)
T PRK09989 88 DLALEYALALNCEQVHVMAGVVPA------GEDAERYRAVFIDNLRYAADRFAPHGKR-ILVEALSPGVKPHYLFSSQYQ 160 (258)
T ss_pred HHHHHHHHHhCcCEEEECccCCCC------CCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEeCCCCCCCCCccCCHHH
Confidence 666666566788887765432210 112 233566677778888888874 433221 111123444
Q ss_pred HHHHHHHHHHcCCcEE-eecCcccccCHH-HHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 236 LYEILGEVIKVGATTL-NIPDTVGITMPT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I-~l~DTvG~~~P~-~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
+.++++ +.+.+.+ ..-||.-...+. .+.++++....+ ...+|.++..+ ..
T Consensus 161 ~~~ll~---~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~r-------i~hvHi~D~~~------------------~~ 212 (258)
T PRK09989 161 ALAIVE---EVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGK-------YAHVQIAGLPD------------------RH 212 (258)
T ss_pred HHHHHH---HcCCCCeEEEeehHhHHHcCCCHHHHHHHhhhh-------EEEEEECCCCC------------------CC
Confidence 445544 3454444 444776554442 233444443332 24777774111 12
Q ss_pred cCCccCccCcccHHHHHHHHHhccc
Q 006969 314 INGIGERAGNASLEEVVMAFKCRGE 338 (623)
Q Consensus 314 v~GlGERaGNa~lEevv~~L~~~~~ 338 (623)
. .| .|..+..+++.+|+..|.
T Consensus 213 ~--pG--~G~id~~~i~~al~~~Gy 233 (258)
T PRK09989 213 E--PD--DGEINYPWLFRLFDEVGY 233 (258)
T ss_pred C--CC--CCCcCHHHHHHHHHHcCC
Confidence 2 34 378899999999998663
No 133
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=93.61 E-value=10 Score=39.93 Aligned_cols=183 Identities=19% Similarity=0.138 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH--HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+++.-.+.+.+.|=--+|... +-+ ...++.+++.. -+|...=|=-+ ..++|.+|++
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~---------~VPV~lHLDH~~~~~~i~~ai~ 90 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA---------SVPVALHLDHGSSFELIKRAIR 90 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 457788899999999999987644344321 111 23444444432 13443333333 2466666666
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC------CCCCHHHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKFLYE 238 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda------~r~d~e~l~~ 238 (623)
+ |...|.+=. | ..+.+||++..++.+++|+..|+. |+- +.||. ..|+|+.+.+
T Consensus 91 ~----GftSVMiD~--S--------~l~~eeNi~~t~~vv~~ah~~gv~-VEaElG~i~g~e~~~~~~~~~~T~pe~a~~ 155 (276)
T cd00947 91 A----GFSSVMIDG--S--------HLPFEENVAKTKEVVELAHAYGVS-VEAELGRIGGEEDGVVGDEGLLTDPEEAEE 155 (276)
T ss_pred h----CCCEEEeCC--C--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeecCccCCcccccccCCCHHHHHH
Confidence 5 888775422 3 246899999999999999999985 532 22222 3578988887
Q ss_pred HHHHHHHcCCcEEeec--Cccccc---CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 239 ILGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~--DTvG~~---~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
++++ -|+|.+-++ -.=|.- .|.-=.++++.+++.++ +||.+|. ..|+.--+-..|++.|+.-|+.
T Consensus 156 Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~----vPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 156 FVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN----VPLVLHG--GSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred HHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHHHHHHcCCeEEEe
Confidence 7764 488865543 222322 45555678888888773 6788665 5577778888999999888743
No 134
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=93.49 E-value=6.1 Score=41.70 Aligned_cols=162 Identities=17% Similarity=0.251 Sum_probs=83.5
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEec----CCCCh----hHHHHHHHHHHHhccccccCCCcc
Q 006969 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF----PAASK----EDFEAVRTIAKEVGNAVDAESGYV 151 (623)
Q Consensus 80 v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf----P~~s~----~d~e~v~~i~~~~~~~~~~~~~l~ 151 (623)
+=|+-+|. |-..--|..++.++-++-+..+.+.|.|+|++|. |.+.+ +|++.+..+.+.+.... . +
T Consensus 18 mGIlNvTp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~----~-~ 91 (282)
T PRK11613 18 MGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF----E-V 91 (282)
T ss_pred EEEEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----C-C
Confidence 34555543 3332224457999999999999999999999995 44322 23433332333222110 0 1
Q ss_pred ceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC---
Q 006969 152 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA--- 228 (623)
Q Consensus 152 ~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda--- 228 (623)
| | ..=-.+.+-++.|+++ |++.|+-..+. +.++.+ +.+++.|+. +...+..+
T Consensus 92 ~-I-SIDT~~~~va~~AL~~----GadiINDI~g~-----------~d~~~~-------~~~a~~~~~-vVlmh~~g~p~ 146 (282)
T PRK11613 92 W-I-SVDTSKPEVIRESAKA----GAHIINDIRSL-----------SEPGAL-------EAAAETGLP-VCLMHMQGNPK 146 (282)
T ss_pred e-E-EEECCCHHHHHHHHHc----CCCEEEECCCC-----------CCHHHH-------HHHHHcCCC-EEEEcCCCCCC
Confidence 1 2 2222345556666664 88876532221 111222 224566765 44433211
Q ss_pred --C-CC---C-----HHHHHHHHHHHHHcCCc--EEeecCc-cccc-CHHHHHHHHHHHH
Q 006969 229 --G-RS---D-----RKFLYEILGEVIKVGAT--TLNIPDT-VGIT-MPTEFGKLIADIK 273 (623)
Q Consensus 229 --~-r~---d-----~e~l~~~~~~~~~aGa~--~I~l~DT-vG~~-~P~~v~~li~~l~ 273 (623)
. +. | .+|+.+.++.+.++|.. .|.+ |- .|.. ++++-.++++.+.
T Consensus 147 ~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil-DPGiGF~k~~~~n~~ll~~l~ 205 (282)
T PRK11613 147 TMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL-DPGFGFGKNLSHNYQLLARLA 205 (282)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCCcCCCHHHHHHHHHHHH
Confidence 1 11 1 25777788888889985 4433 33 3432 3445555555543
No 135
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.32 E-value=5.9 Score=43.09 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH-----HHHHHHHHHhccccccCCCccceEEeecccchhhHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 168 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 168 (623)
.-=+.++-+++|+.|.+.|++.+=.|+ |..||..| +-++.+.+.... .|+ +.++- -...++++..
T Consensus 110 sIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e-----~Gl-~~~te--v~d~~~v~~~ 181 (352)
T PRK13396 110 SVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREA-----TGL-GIITE--VMDAADLEKI 181 (352)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHH-----cCC-cEEEe--eCCHHHHHHH
Confidence 344789999999999999999998875 77776432 333333332111 133 22221 1245566655
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCC
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa 248 (623)
.+. .+.+.| +..+. . + .+.++++-+.|.. |.++- +.-.+++.+...++.+.+.|-
T Consensus 182 ~~~-----~d~lqI--ga~~~--------~---n----~~LL~~va~t~kP-Vllk~--G~~~t~ee~~~A~e~i~~~Gn 236 (352)
T PRK13396 182 AEV-----ADVIQV--GARNM--------Q---N----FSLLKKVGAQDKP-VLLKR--GMAATIDEWLMAAEYILAAGN 236 (352)
T ss_pred Hhh-----CCeEEE--Ccccc--------c---C----HHHHHHHHccCCe-EEEeC--CCCCCHHHHHHHHHHHHHcCC
Confidence 442 355443 33221 1 1 2345666667764 66643 223478888888999989999
Q ss_pred cEEeecCc-----c-cccCHHHHH--HHHHHHHHhCCCCcceeEEE---eecCCcchHHHHHHHHHHhCCC--EEEeccC
Q 006969 249 TTLNIPDT-----V-GITMPTEFG--KLIADIKANTPGIENVVIST---HCQNDLGLSTANTIAGACAGAR--QVEVTIN 315 (623)
Q Consensus 249 ~~I~l~DT-----v-G~~~P~~v~--~li~~l~~~~~~~~~v~i~~---H~HND~GlAvANslaAv~aGA~--~Vd~Tv~ 315 (623)
..|.||.. . ++. ...- ..|..+++.+. +|+-+ |.=-...+-.+-+++|+.+||+ .|+.=..
T Consensus 237 ~~viL~erG~rtf~s~y~--~~~~dl~ai~~lk~~~~----lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~ 310 (352)
T PRK13396 237 PNVILCERGIRTFDRQYT--RNTLDLSVIPVLRSLTH----LPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPN 310 (352)
T ss_pred CeEEEEecCCccCcCCCC--CCCcCHHHHHHHHHhhC----CCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCC
Confidence 88999876 3 443 2222 23556676542 34522 3224444556889999999999 7776554
No 136
>PLN02428 lipoic acid synthase
Probab=93.31 E-value=2.9 Score=45.35 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCC---ChhHH----HHHHHHHHHhccccccCCCccceEEeecccchhhHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAA---SKEDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 168 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~---s~~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 168 (623)
.....++-.++++.+.+.|++++=+-.... ...++ +.++.|.+..+. ..+..+...-..+ +..
T Consensus 128 ~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~---------i~Ie~L~pdf~~d-~el 197 (349)
T PLN02428 128 PPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPE---------ILVEALVPDFRGD-LGA 197 (349)
T ss_pred CCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCC---------cEEEEeCccccCC-HHH
Confidence 355678888999999999999876644321 11222 444555443211 2444443321112 346
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHc--CCCeEEEcccCCCCCCHHHHHHHHHHH
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEV 243 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~ak~~--G~~~V~f~~eda~r~d~e~l~~~~~~~ 243 (623)
++.++++|.++++.-+-+++- +..+++ .+.++ ..+.++.+++. |+. +.-+.+-+.--+.+.+.++++.+
T Consensus 198 L~~L~eAG~d~i~hnlETv~r-L~~~Ir~~~~sye~----~Le~L~~ak~~~pGi~-tkSg~MvGLGET~Edv~e~l~~L 271 (349)
T PLN02428 198 VETVATSGLDVFAHNIETVER-LQRIVRDPRAGYKQ----SLDVLKHAKESKPGLL-TKTSIMLGLGETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHcCCCEEccCccCcHH-HHHHhcCCCCCHHH----HHHHHHHHHHhCCCCe-EEEeEEEecCCCHHHHHHHHHHH
Confidence 677888899998877777664 445555 34444 44567777877 764 32222222234568888999999
Q ss_pred HHcCCcEEeecCc----------ccccCHHHHHHHHHH
Q 006969 244 IKVGATTLNIPDT----------VGITMPTEFGKLIAD 271 (623)
Q Consensus 244 ~~aGa~~I~l~DT----------vG~~~P~~v~~li~~ 271 (623)
.+.|++.+.|.=- .-+-+|+++.++=+.
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~ 309 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREY 309 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHH
Confidence 9999999866321 223366666555433
No 137
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=93.29 E-value=6.8 Score=39.55 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=109.8
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecc--cc----hhhHHHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR--CN----ERDIKTA 168 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r--~~----~~dI~~a 168 (623)
+-..|.++..++.+...+.||.-+-+ +|. +++...+.+.+. . ..+..+.+|=. .. ...++.|
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv-~p~-------~v~~a~~~l~~~---~-v~v~tVigFP~G~~~~~~K~~E~~~A 79 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCV-NPS-------YVPLAKELLKGT---E-VRICTVVGFPLGASTTDVKLYETKEA 79 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEe-CHH-------HHHHHHHHcCCC---C-CeEEEEeCCCCCCCcHHHHHHHHHHH
Confidence 44679999999999999999988887 442 344444443221 0 11223334322 11 1223333
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCC
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa 248 (623)
++ .|++.|.+++..+.+ ..-..+++.+.+.+.++.+. |.. +-+-.|.+. .+.+.+...++.+.++||
T Consensus 80 v~----~GAdEiDvv~n~g~l-----~~g~~~~v~~ei~~i~~~~~--g~~-lKvIlE~~~-L~~~ei~~a~~ia~eaGA 146 (211)
T TIGR00126 80 IK----YGADEVDMVINIGAL-----KDGNEEVVYDDIRAVVEACA--GVL-LKVIIETGL-LTDEEIRKACEICIDAGA 146 (211)
T ss_pred HH----cCCCEEEeecchHhh-----hCCcHHHHHHHHHHHHHHcC--CCe-EEEEEecCC-CCHHHHHHHHHHHHHhCC
Confidence 33 489999988765421 12345667777777777664 543 333344333 455778899999999999
Q ss_pred cEEeecC--cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 249 TTLNIPD--TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 249 ~~I~l~D--TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
|.|--.- +.+.++|..+..+-+.+...++ +..+-=.+ + ..-+++-+++||++|-+|
T Consensus 147 DfvKTsTGf~~~gat~~dv~~m~~~v~~~v~----IKaaGGir-t----~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 147 DFVKTSTGFGAGGATVEDVRLMRNTVGDTIG----VKASGGVR-T----AEDAIAMIEAGASRIGAS 204 (211)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHhccCCe----EEEeCCCC-C----HHHHHHHHHHhhHHhCcc
Confidence 9887642 2245688877776666554332 33322222 3 355677778888887443
No 138
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=93.21 E-value=3.9 Score=41.22 Aligned_cols=159 Identities=21% Similarity=0.178 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccc----cccCCCc--------cceEEeeccc-----
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNA----VDAESGY--------VPVICGLSRC----- 160 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~----~~~~~~l--------~~~i~~~~r~----- 160 (623)
-+.|+-++-.+...+.--.-+-+|-.+-.|..|..+..|+....+. +.+..++ -..+-+|.+.
T Consensus 38 ~tve~av~~mk~y~~~~~~avSVGLGaGdp~Q~~~Va~Ia~~~~P~HVNQvFtgag~sr~~Lg~~~T~vN~LvsPTG~~G 117 (236)
T TIGR03581 38 PTVEEAIEDMKKYQKEIDNAVSVGLGAGDPNQSAMVADISAHTQPQHINQVFTGVGTSRALLGQADTVINGLVSPTGTPG 117 (236)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHHHcCCccccccccchHHHHHHhCCccceEEEeecCCCccc
Confidence 3667777777777665555588887777788888888888754221 1100000 0011111111
Q ss_pred -----------ch----hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 006969 161 -----------NE----RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 225 (623)
Q Consensus 161 -----------~~----~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ 225 (623)
.. -+++.|+..+++.|...|.+|- .- | ...++.++..++.|.++|+. .
T Consensus 118 ~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffP-M~--------G---l~~leE~~avA~aca~~g~~-----l 180 (236)
T TIGR03581 118 LVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFP-MG--------G---LKHLEEYAAVAKACAKHGFY-----L 180 (236)
T ss_pred eEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEee-cC--------C---cccHHHHHHHHHHHHHcCCc-----c
Confidence 00 1467788888888888887662 11 1 12244555666777777752 2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEE-------eecCcccccCHHHHHHHHHHHH
Q 006969 226 EDAGRSDRKFLYEILGEVIKVGATTL-------NIPDTVGITMPTEFGKLIADIK 273 (623)
Q Consensus 226 eda~r~d~e~l~~~~~~~~~aGa~~I-------~l~DTvG~~~P~~v~~li~~l~ 273 (623)
|-++-.|.+.+.++++.+.++|+..| .|=-..|...|+++.+++..++
T Consensus 181 EPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 181 EPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred CCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 55777888888999999999997644 2334678889999999888776
No 139
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.11 E-value=0.67 Score=46.58 Aligned_cols=155 Identities=23% Similarity=0.265 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-+.|+-+.+++.|.+-|++.||+.+ .+|.-.|.++.++++.++.+. -+=+-.+.++++.+.++ |.
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl--~sp~a~e~I~~l~~~~p~~lI---------GAGTVL~~~q~~~a~~a----Ga 86 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL--RTPAALEAIRALAKEFPEALI---------GAGTVLNPEQARQAIAA----GA 86 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec--CCCCHHHHHHHHHHhCcccEE---------ccccccCHHHHHHHHHc----CC
Confidence 4789999999999999999999976 567777899999987653211 11122367788877665 65
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee--cC
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 255 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l--~D 255 (623)
+-| +.|. .+ .+.+++|+.+|+. +.|--++.++ +..+.++|++.+-+ +.
T Consensus 87 ~fi--VsP~----------~~--------~ev~~~a~~~~ip---~~PG~~TptE-------i~~Ale~G~~~lK~FPa~ 136 (211)
T COG0800 87 QFI--VSPG----------LN--------PEVAKAANRYGIP---YIPGVATPTE-------IMAALELGASALKFFPAE 136 (211)
T ss_pred CEE--ECCC----------CC--------HHHHHHHHhCCCc---ccCCCCCHHH-------HHHHHHcChhheeecCcc
Confidence 532 2222 12 2578889999864 4553333332 23456789887765 23
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 256 TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
++|. ..+++.+.--+|+ +. +=-+-|-...|.-.-+.+|+..+
T Consensus 137 ~~Gg------~~~~ka~~gP~~~---v~----~~pTGGVs~~N~~~yla~gv~av 178 (211)
T COG0800 137 VVGG------PAMLKALAGPFPQ---VR----FCPTGGVSLDNAADYLAAGVVAV 178 (211)
T ss_pred ccCc------HHHHHHHcCCCCC---Ce----EeecCCCCHHHHHHHHhCCceEE
Confidence 3332 1344444433432 22 33456777779999999995544
No 140
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=93.03 E-value=5.4 Score=43.68 Aligned_cols=231 Identities=21% Similarity=0.104 Sum_probs=135.7
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEE--e-cCCCChh-HHHHHHHHHHHhccccccCCCccce-EEeecccchhhHHHH
Q 006969 94 PGATLTSKEKLDIARQLAKLGVDIIEA--G-FPAASKE-DFEAVRTIAKEVGNAVDAESGYVPV-ICGLSRCNERDIKTA 168 (623)
Q Consensus 94 ~g~~~t~e~Kl~Ia~~L~~~Gvd~IEv--G-fP~~s~~-d~e~v~~i~~~~~~~~~~~~~l~~~-i~~~~r~~~~dI~~a 168 (623)
.+..|+.++.++.++.+.+.|+.+|=+ | .|..+.. ..+.++.|.+..++- . ..++.+. +.-+++.....++..
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~-~-i~a~s~~ei~~~~~~~~~s~~E~ 163 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDL-H-IHALSAGEILFLAREGGLSYEEV 163 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcch-h-hcccCHHHhHHHHhccCCCHHHH
Confidence 467899999999999999999998766 3 2544432 225556665532210 0 0022111 222233333345566
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHH------hCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHH
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHK------LRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 242 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~------l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~ 242 (623)
++.|+.+|.+.+- ....+++.+.. -+++.++-|+ ..+.|.++|+..+.... .+.--+++..++-+..
T Consensus 164 l~~Lk~aGldsmp--g~~aeil~e~vr~~~~p~K~~~~~wle----~~~~Ah~lGI~~tatml-~Gh~E~~ed~~~hl~~ 236 (370)
T COG1060 164 LKRLKEAGLDSMP--GGGAEILSEEVRKIHCPPKKSPEEWLE----IHERAHRLGIPTTATML-LGHVETREDRIDHLEH 236 (370)
T ss_pred HHHHHHcCCCcCc--CcceeechHHHHHhhCCCCCCHHHHHH----HHHHHHHcCCCccceeE-EEecCCHHHHHHHHHH
Confidence 7778888988743 44556666442 2456666554 77889999987432111 1222224444343333
Q ss_pred ---HHH-c-CCcEEeec-----Cc------ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 006969 243 ---VIK-V-GATTLNIP-----DT------VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 243 ---~~~-a-Ga~~I~l~-----DT------vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 306 (623)
+.+ . |...+.+. .| ..-..+.++-..|+..|-.++. .|...-=-.+-+++.-+..++.+|
T Consensus 237 ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~----~i~~~~a~w~~~g~~~~~~~l~~G 312 (370)
T COG1060 237 IRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN----NISNIQASWLRDGVILAQAALLSG 312 (370)
T ss_pred HHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC----ccccccCcccccchHHHHHHHHhC
Confidence 332 2 33333322 22 1225667777777777766652 133233334666777789999999
Q ss_pred CCEEEeccCC--ccCccC-----cccHHHHHHHHHhcc
Q 006969 307 ARQVEVTING--IGERAG-----NASLEEVVMAFKCRG 337 (623)
Q Consensus 307 A~~Vd~Tv~G--lGERaG-----Na~lEevv~~L~~~~ 337 (623)
|+-+.+|... +=..+| +.+.|+|+..+...|
T Consensus 313 anD~ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG 350 (370)
T COG1060 313 ANDLGGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAG 350 (370)
T ss_pred cccCcCCCcccccccccccccCCCCCHHHHHHHHHHcC
Confidence 9999999887 212566 888999999988754
No 141
>PRK08185 hypothetical protein; Provisional
Probab=92.99 E-value=14 Score=39.04 Aligned_cols=182 Identities=18% Similarity=0.169 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH-HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWEA 171 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ea 171 (623)
.++.+.-..+.+.-.+++.+.|=-.+|... +.+ ...++.+++.. -+|...=|=-+ ..++++.+++.
T Consensus 20 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~---------~vPV~lHLDHg~~~e~i~~ai~~ 90 (283)
T PRK08185 20 VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRS---------PVPFVIHLDHGATIEDVMRAIRC 90 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHHc
Confidence 468899999999999999998866555432 222 24445555432 13544333333 34566666664
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC--------CCCCHHHHH
Q 006969 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFLY 237 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda--------~r~d~e~l~ 237 (623)
|...|.+= .| ..+.+|+++..++.+++|+..|.. |+- ..++. ..++|+.+.
T Consensus 91 ----Gf~SVM~D--~S--------~l~~eeNi~~t~~vv~~a~~~gv~-vE~ElG~vg~~e~~~~~~~~~~~~t~peea~ 155 (283)
T PRK08185 91 ----GFTSVMID--GS--------LLPYEENVALTKEVVELAHKVGVS-VEGELGTIGNTGTSIEGGVSEIIYTDPEQAE 155 (283)
T ss_pred ----CCCEEEEe--CC--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeccCcccccccccccccCCCHHHHH
Confidence 87776442 22 247899999999999999999875 431 11111 145777665
Q ss_pred HHHHHHHHcCCcEEeec-Cccccc-----CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 238 EILGEVIKVGATTLNIP-DTVGIT-----MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l~-DTvG~~-----~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
++++ +-|+|.+-++ -|++.. .|.---++++.+++.++ +||-+|.-- |.....-..|+..|+.-|+
T Consensus 156 ~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~----iPLVlHGgs--g~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 156 DFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD----IPLVLHGGS--ANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred HHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC----CCEEEECCC--CCCHHHHHHHHHCCCeEEE
Confidence 5554 3488877762 233333 24334667888887763 678877765 4456778889999988774
No 142
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=92.97 E-value=0.73 Score=47.86 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=58.7
Q ss_pred EEEccc---CCCC-CCHHHHHHHHHHHHHcCCcEEeec------CcccccCHHH---HHHHHHHHHHhCCCCcceeEEEe
Q 006969 221 VEFSPE---DAGR-SDRKFLYEILGEVIKVGATTLNIP------DTVGITMPTE---FGKLIADIKANTPGIENVVISTH 287 (623)
Q Consensus 221 V~f~~e---da~r-~d~e~l~~~~~~~~~aGa~~I~l~------DTvG~~~P~~---v~~li~~l~~~~~~~~~v~i~~H 287 (623)
+..+|. |+++ .+++.+.+.++...+.||+.|-+. +...+...+| +..+|+.+++.+ +++|++|
T Consensus 6 lN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~----~~plsiD 81 (257)
T TIGR01496 6 VNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP----DVPISVD 81 (257)
T ss_pred EeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEe
Confidence 445454 6666 478999999999999999999993 2222222235 555556666554 3789999
Q ss_pred ecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 288 CQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 288 ~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
.++- .-..+|+++|++.|+-.
T Consensus 82 T~~~-----~vi~~al~~G~~iINsi 102 (257)
T TIGR01496 82 TYRA-----EVARAALEAGADIINDV 102 (257)
T ss_pred CCCH-----HHHHHHHHcCCCEEEEC
Confidence 9994 34467888899998754
No 143
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=92.96 E-value=9.9 Score=40.16 Aligned_cols=196 Identities=10% Similarity=0.092 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhh-HHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (623)
.+..+.-.++++.|.+.||+-|=++ |+.-+.+|. +.++...+... +.+|.+++.+....++ |+.+-
T Consensus 17 ~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-------g~~pvi~gv~~~~t~~ai~~a~ 89 (294)
T TIGR02313 17 DIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-------GRIPFAPGTGALNHDETLELTK 89 (294)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-------CCCcEEEECCcchHHHHHHHHH
Confidence 3788888999999999999988663 355555554 55555555432 3357787877655444 44333
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC--CCCCCHHHHHHHHHHHHHcC
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed--a~r~d~e~l~~~~~~~~~aG 247 (623)
.....|++.+-+..|.. +..+.+++++-....++... ++..+.|+... +...+++.+.++++. -
T Consensus 90 -~A~~~Gad~v~v~pP~y-------~~~~~~~l~~~f~~ia~a~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~----~ 155 (294)
T TIGR02313 90 -FAEEAGADAAMVIVPYY-------NKPNQEALYDHFAEVADAVP--DFPIIIYNIPGRAAQEIAPKTMARLRKD----C 155 (294)
T ss_pred -HHHHcCCCEEEEcCccC-------CCCCHHHHHHHHHHHHHhcc--CCCEEEEeCchhcCcCCCHHHHHHHHhh----C
Confidence 33557999887665532 34466676666665555432 34435564332 345566766655532 3
Q ss_pred CcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHH
Q 006969 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (623)
Q Consensus 248 a~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lE 327 (623)
...+.+.||.|-+ ..+.+++ +..++ +..+ +.+++ ...+.++.+||+.. +.| .+|.-.+
T Consensus 156 pnv~giK~ss~d~--~~~~~~~----~~~~~--~~~v-~~G~d------~~~~~~l~~Ga~G~---is~----~~n~~P~ 213 (294)
T TIGR02313 156 PNIVGAKESNKDF--EHLNHLF----LEAGR--DFLL-FCGIE------LLCLPMLAIGAAGS---IAA----TANVEPK 213 (294)
T ss_pred CCEEEEEeCCCCH--HHHHHHH----HhcCC--CeEE-EEcch------HHHHHHHHCCCCEE---Eec----HHhhCHH
Confidence 4789999998742 4344433 23332 1222 22332 45567888998655 443 3577776
Q ss_pred HHHHHHHh
Q 006969 328 EVVMAFKC 335 (623)
Q Consensus 328 evv~~L~~ 335 (623)
.++...+.
T Consensus 214 ~~~~l~~~ 221 (294)
T TIGR02313 214 EVAELCEA 221 (294)
T ss_pred HHHHHHHH
Confidence 66554443
No 144
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=92.87 E-value=3.7 Score=43.84 Aligned_cols=141 Identities=14% Similarity=0.093 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHh
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
..++.++..++++.+.+.|+..|-+ |=|-..++=.+.++.+.+..+ . ..+...+... -++..++.++
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~--------~-~~i~itTNG~--ll~~~~~~L~ 115 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPG--------I-RDLALTTNGY--LLARRAAALK 115 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCC--------C-ceEEEEcCch--hHHHHHHHHH
Confidence 4589999999999999999998887 346555433355555544210 1 1222222221 1233345567
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCc
Q 006969 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~ 249 (623)
.+|.++|.+.+-+.+--...+++. ...++.+.+.++.+++.|+..|.++..-....+.+.+.++++.+.+.|++
T Consensus 116 ~agl~~i~ISlds~~~e~~~~i~~--~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 116 DAGLDRVNVSLDSLDPERFKAITG--RDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred HcCCCEEEEEeccCCHHHhccCCC--CCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCe
Confidence 778888887765433222222222 23466677777777777762244322111112335666666666666654
No 145
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=92.77 E-value=4.4 Score=43.44 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe--cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhH--HHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG--FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI--KTAWEA 171 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI--~~a~ea 171 (623)
.+|.|+..++++...++||+-|=+. =|-- ..|+ +.++.+++. + + .+ ..+ .-+++ .+-.+.
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-R~dl~eIi~~l~~~-~--~-~~----isl------TTNG~~L~~~a~~ 106 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-RKDLDEIIARLARL-G--I-RD----LSL------TTNGVLLARRAAD 106 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEeCCCchh-hcCHHHHHHHHhhc-c--c-ce----EEE------ecchhhHHHHHHH
Confidence 6899999999999999999988773 4643 3343 555555543 1 0 01 011 12233 223455
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCc--
Q 006969 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT-- 249 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~-- 249 (623)
|++||.++|++..-+-|-...+++... ..++.+.+.|+.|.+.|+..|-++..-.-..+.+.+.++++.+.+-|+.
T Consensus 107 Lk~AGl~rVNVSLDsld~e~f~~IT~~--~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lr 184 (322)
T COG2896 107 LKEAGLDRVNVSLDSLDPEKFRKITGR--DRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLR 184 (322)
T ss_pred HHHcCCcEEEeecccCCHHHHHHHhCC--CcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceE
Confidence 788999999998777665555554322 2378888999999999986565544322225778888888888888863
Q ss_pred EEeecCcc
Q 006969 250 TLNIPDTV 257 (623)
Q Consensus 250 ~I~l~DTv 257 (623)
-|-+-|+-
T Consensus 185 fIE~m~~g 192 (322)
T COG2896 185 FIELMPLG 192 (322)
T ss_pred EEEEeecC
Confidence 34444443
No 146
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=92.68 E-value=3.5 Score=41.92 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCcEEeecCcccccC---HHHHHHHHHHHHHhCCC--CcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITM---PTEFGKLIADIKANTPG--IENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~---P~~v~~li~~l~~~~~~--~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
..-++.+++.||+.|-+.=..|... .+.+++-|+.+++..++ .=+++|+.-.=+|.-+ ...+..++++||+.|-
T Consensus 80 ~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~-~~A~~i~~~aGAdFVK 158 (228)
T COG0274 80 AAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEK-RKACEIAIEAGADFVK 158 (228)
T ss_pred HHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHH-HHHHHHHHHhCCCEEE
Confidence 3446677889999998888888764 56677888888887765 2368888878888888 7778899999999999
Q ss_pred eccCCccCccCcccHHHHHHHHHhcc
Q 006969 312 VTINGIGERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 312 ~Tv~GlGERaGNa~lEevv~~L~~~~ 337 (623)
+|-+.- .|++.+|.+..+.+.-|
T Consensus 159 TSTGf~---~~gAT~edv~lM~~~vg 181 (228)
T COG0274 159 TSTGFS---AGGATVEDVKLMKETVG 181 (228)
T ss_pred cCCCCC---CCCCCHHHHHHHHHHhc
Confidence 987543 79999999887777654
No 147
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=92.64 E-value=0.062 Score=52.26 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=88.9
Q ss_pred HHHHhHcCCCEEEEecCCCCh-----hHHHHHHHHHHHhccccccCCCccceEEeecc----------cc------hhhH
Q 006969 107 ARQLAKLGVDIIEAGFPAASK-----EDFEAVRTIAKEVGNAVDAESGYVPVICGLSR----------CN------ERDI 165 (623)
Q Consensus 107 a~~L~~~Gvd~IEvGfP~~s~-----~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r----------~~------~~dI 165 (623)
++.+.++|++.||+.++...+ .+.+.++++.+..+-. +..+....+ .+ .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~-------i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLK-------IASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCE-------EEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCe-------EEEEecccccccccccccCcchhhHHHHHHH
Confidence 367889999999998632222 2355566555542211 111211111 11 3345
Q ss_pred HHHHHHHhcCCCCEEEEEec---CC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCC----CCHHHHH
Q 006969 166 KTAWEAVKYAKRPRIHTFIA---TS-GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR----SDRKFLY 237 (623)
Q Consensus 166 ~~a~eal~~a~~~~v~i~~~---~S-d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r----~d~e~l~ 237 (623)
+.+++..+..|.+.+.+... .. +...+ ...+...+.+.+++++|++.|+. +.+-+..... .+.+.+.
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~----~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE----ENWERLAENLRELAEIAEEYGVR-IALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHH----HHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHH----HHHHHHHHHHHHHHhhhhhhcce-EEEecccCccccchhhHHHHH
Confidence 55666666668888877755 11 11111 12445666777888889999974 5553221211 1235666
Q ss_pred HHHHHHHHcCCcEEeec-CcccccC-HHHHHHHHHHHHHhCCCCcceeEEEeecCCcc
Q 006969 238 EILGEVIKVGATTLNIP-DTVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLG 293 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l~-DTvG~~~-P~~v~~li~~l~~~~~~~~~v~i~~H~HND~G 293 (623)
++++.+ +-+.+.++ ||.-... .....+.++.+...+ ..+|.+|..+
T Consensus 149 ~~l~~~---~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~i-------~~vHi~D~~~ 196 (213)
T PF01261_consen 149 RLLEEV---DSPNVGICFDTGHLIMAGEDPDEAIKRLAPRI-------KHVHIKDANG 196 (213)
T ss_dssp HHHHHH---TTTTEEEEEEHHHHHHTTHHHHHHHHHHHHGE-------EEEEE-EESS
T ss_pred HHHhhc---CCCcceEEEehHHHHHcCCCHHHHHHHhhcce-------eEEEEeCCCC
Confidence 666544 54334444 5533322 245666777766553 6899988777
No 148
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=92.62 E-value=0.5 Score=46.68 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCc
Q 006969 238 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI 317 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~Gl 317 (623)
+-++++.++|++.|.| |-.....|..+.++|+.+++++ ..+-.-|-+ +..++.|.++|+|.|-+|+.|+
T Consensus 55 ~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~-----~l~MADist-----~ee~~~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 55 KEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY-----QLVMADIST-----LEEAINAAELGFDIIGTTLSGY 123 (192)
T ss_dssp HHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT-----SEEEEE-SS-----HHHHHHHHHTT-SEEE-TTTTS
T ss_pred HHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC-----cEEeeecCC-----HHHHHHHHHcCCCEEEcccccC
Confidence 4466778899999998 8888888999999999999987 234445543 7899999999999999999998
Q ss_pred cC
Q 006969 318 GE 319 (623)
Q Consensus 318 GE 319 (623)
=+
T Consensus 124 T~ 125 (192)
T PF04131_consen 124 TP 125 (192)
T ss_dssp ST
T ss_pred CC
Confidence 44
No 149
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=92.50 E-value=7.3 Score=40.32 Aligned_cols=130 Identities=25% Similarity=0.360 Sum_probs=76.3
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCC--------ChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAA--------SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~--------s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (623)
+..++.+.-++.++.+.+.|.|+|++|.... ..++++.+..+.+.+.... . .| | ++--.+.+-++
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~-~p-i-SIDT~~~~v~~ 90 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----D-VP-I-SVDTFNAEVAE 90 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----C-Ce-E-EEeCCcHHHHH
Confidence 4457899999999999999999999996332 2345555555555442210 1 12 2 33334566667
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CC--------CC-----
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GR--------SD----- 232 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r--------~d----- 232 (623)
.|++. +.+.|. ++|-. +.+ .++++.++++|+. +...+.+. +. .+
T Consensus 91 aaL~~----g~~iIN---dis~~------~~~--------~~~~~l~~~~~~~-vV~m~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T cd00423 91 AALKA----GADIIN---DVSGG------RGD--------PEMAPLAAEYGAP-VVLMHMDGTPQTMQNNPYYADVVDEV 148 (258)
T ss_pred HHHHh----CCCEEE---eCCCC------CCC--------hHHHHHHHHcCCC-EEEECcCCCCcccccCCCcchHHHHH
Confidence 66665 555544 33320 001 2456677788886 44433222 11 11
Q ss_pred HHHHHHHHHHHHHcCC--cEEee
Q 006969 233 RKFLYEILGEVIKVGA--TTLNI 253 (623)
Q Consensus 233 ~e~l~~~~~~~~~aGa--~~I~l 253 (623)
.+++.+.++.+.++|. +.|.|
T Consensus 149 ~~~~~~~i~~~~~~Gi~~~~Iil 171 (258)
T cd00423 149 VEFLEERVEAATEAGIPPEDIIL 171 (258)
T ss_pred HHHHHHHHHHHHHcCCCHHHEEE
Confidence 4788888888999995 34444
No 150
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=92.48 E-value=2.1 Score=39.34 Aligned_cols=137 Identities=14% Similarity=0.057 Sum_probs=82.6
Q ss_pred CCCCCHHHHHHHHHHH-hHcCCCEEEEec--CCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHH
Q 006969 95 GATLTSKEKLDIARQL-AKLGVDIIEAGF--PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L-~~~Gvd~IEvGf--P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 171 (623)
...++.++.++.++.+ .+.|+..|-.|. |...++..+.+..+.+.... ...+.-.+.....+ +..++.
T Consensus 25 ~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~--------~~~i~~~t~~~~~~-~~~l~~ 95 (166)
T PF04055_consen 25 PREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKR--------GIRISINTNGTLLD-EELLDE 95 (166)
T ss_dssp CEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCT--------TEEEEEEEESTTHC-HHHHHH
T ss_pred cccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHhhcc--------ccceeeeccccchh-HHHHHH
Confidence 5678999999999999 799988888864 55555555555555543101 12344444444333 555666
Q ss_pred HhcCCCCEEEEEecCCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHH
Q 006969 172 VKYAKRPRIHTFIATSGIH-MEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 242 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h-~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~ 242 (623)
++..+.+.|.+.+.+.+-. ....++. ....+.+.+.++.+++.|+..+.....-.-..+.+.+.++++.
T Consensus 96 l~~~~~~~i~~~l~s~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 96 LKKLGVDRIRISLESLDEESVLRIINR--GKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHTTCSEEEEEEBSSSHHHHHHHHSS--TSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHhcCccEEecccccCCHHHhhhhhcC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 7777888888876666555 6666642 2235666778889999987512211111112344555565553
No 151
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.45 E-value=2.4 Score=45.64 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=91.5
Q ss_pred HHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecC
Q 006969 107 ARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIAT 186 (623)
Q Consensus 107 a~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~ 186 (623)
++.|.++|++.|-+|+.-. .++.+++.+++.. .|.|..-+.+..++|+.|++.+...|.+.|.+.=.+
T Consensus 103 vd~l~~~~v~~~KI~S~~~--~n~~LL~~va~~g----------kPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~ 170 (327)
T TIGR03586 103 VDFLESLDVPAYKIASFEI--TDLPLIRYVAKTG----------KPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCT 170 (327)
T ss_pred HHHHHHcCCCEEEECCccc--cCHHHHHHHHhcC----------CcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecC
Confidence 4566677777777765432 3577888887741 267777777899999999999988887656553223
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE--------ee--cC
Q 006969 187 SGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL--------NI--PD 255 (623)
Q Consensus 187 Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~-~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I--------~l--~D 255 (623)
|. +-.++++ ++ ...+...++ .++. |.|+ | .+ .. ..++.+++.+||+.| .+ +|
T Consensus 171 s~------YP~~~~~-~n--L~~i~~lk~~f~~p-VG~S--D--Ht-~G--~~~~~aAva~GA~iIEkH~tld~~l~G~D 233 (327)
T TIGR03586 171 SS------YPAPLED-AN--LRTIPDLAERFNVP-VGLS--D--HT-LG--ILAPVAAVALGACVIEKHFTLDRSDGGVD 233 (327)
T ss_pred CC------CCCCccc-CC--HHHHHHHHHHhCCC-EEee--C--CC-Cc--hHHHHHHHHcCCCEEEeCCChhhcCCCCC
Confidence 32 2222222 22 234444444 4554 7675 2 11 12 266778888999755 24 68
Q ss_pred cccccCHHHHHHHHHHHHHh
Q 006969 256 TVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 256 TvG~~~P~~v~~li~~l~~~ 275 (623)
-.=.++|.++.++++.+++.
T Consensus 234 ~~~Sl~p~e~~~lv~~ir~~ 253 (327)
T TIGR03586 234 SAFSLEPDEFKALVKEVRNA 253 (327)
T ss_pred hhccCCHHHHHHHHHHHHHH
Confidence 88889999999999999864
No 152
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.45 E-value=1.5 Score=43.76 Aligned_cols=155 Identities=18% Similarity=0.243 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-+.++-+++++.|.+.|++.||+.|- +|.-.+.++.+.+..++. .+-+=+-.+.++.+.++++ |.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~--t~~a~~~I~~l~~~~p~~---------~vGAGTV~~~e~a~~a~~a----GA 81 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLR--TPNALEAIEALRKEFPDL---------LVGAGTVLTAEQAEAAIAA----GA 81 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETT--STTHHHHHHHHHHHHTTS---------EEEEES--SHHHHHHHHHH----T-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC--CccHHHHHHHHHHHCCCC---------eeEEEeccCHHHHHHHHHc----CC
Confidence 46788899999999999999999883 455578888888765321 2222233467888888887 66
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee--cC
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 255 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l--~D 255 (623)
+-+ +.|..+ .+.+++++++|+. +-|- -.+|.. +..+.++|++.+-+ ++
T Consensus 82 ~Fi--vSP~~~------------------~~v~~~~~~~~i~---~iPG---~~TptE----i~~A~~~G~~~vK~FPA~ 131 (196)
T PF01081_consen 82 QFI--VSPGFD------------------PEVIEYAREYGIP---YIPG---VMTPTE----IMQALEAGADIVKLFPAG 131 (196)
T ss_dssp SEE--EESS--------------------HHHHHHHHHHTSE---EEEE---ESSHHH----HHHHHHTT-SEEEETTTT
T ss_pred CEE--ECCCCC------------------HHHHHHHHHcCCc---ccCC---cCCHHH----HHHHHHCCCCEEEEecch
Confidence 543 223221 2678999999874 2221 122232 23456899998764 34
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 256 TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.+|. ..+++.|+.-+|+ +++- -.-|.-..|.-.-+.+|+..+
T Consensus 132 ~~GG------~~~ik~l~~p~p~---~~~~----ptGGV~~~N~~~~l~ag~~~v 173 (196)
T PF01081_consen 132 ALGG------PSYIKALRGPFPD---LPFM----PTGGVNPDNLAEYLKAGAVAV 173 (196)
T ss_dssp TTTH------HHHHHHHHTTTTT----EEE----EBSS--TTTHHHHHTSTTBSE
T ss_pred hcCc------HHHHHHHhccCCC---CeEE----EcCCCCHHHHHHHHhCCCEEE
Confidence 4441 3578888877775 3443 234556678999999997644
No 153
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.44 E-value=1.8 Score=45.63 Aligned_cols=109 Identities=19% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCccc-----------ccCHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEF 265 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG-----------~~~P~~v 265 (623)
.|.+|.++.+.+.++. -.+. |..+.++++-. +..+.+.++.++++|+..|+|-|.++ ...++++
T Consensus 56 lt~~e~~~~~~~I~~~---~~iP-viaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~ 130 (285)
T TIGR02317 56 TTLDEVAEDARRITRV---TDLP-LLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEM 130 (285)
T ss_pred CCHHHHHHHHHHHHhc---cCCC-EEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHH
Confidence 3677777766655443 3455 88899766555 89999999999999999999999973 3356777
Q ss_pred HHHHHHHHHhCCCCcceeEEEe----ecCCcchHHHHHHHHHHhCCCEEE
Q 006969 266 GKLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 266 ~~li~~l~~~~~~~~~v~i~~H----~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.+.|+..++.-.+.+ .-|-.= ....+--|+.-+.+..+||||.|=
T Consensus 131 ~~kI~Aa~~a~~~~d-~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vf 179 (285)
T TIGR02317 131 VDKIAAAVDAKRDED-FVIIARTDARAVEGLDAAIERAKAYVEAGADMIF 179 (285)
T ss_pred HHHHHHHHHhccCCC-EEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEE
Confidence 777877776543321 222221 123344567777788888888763
No 154
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.40 E-value=2.5 Score=43.45 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCccc-----------ccCHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEF 265 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG-----------~~~P~~v 265 (623)
.+.+|.+..+...++.. ... |..+.+.+ -.+++.+.+.++.+.++|+..|.|-|..+ ...+++.
T Consensus 52 ~~~~e~~~~~~~I~~~~---~~P-v~~D~~~G-~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~ 126 (243)
T cd00377 52 LTLDEVLAAVRRIARAV---DLP-VIADADTG-YGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEF 126 (243)
T ss_pred CCHHHHHHHHHHHHhhc---cCC-EEEEcCCC-CCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHH
Confidence 36777777666655544 333 66666554 34778899999999999999999988763 5588899
Q ss_pred HHHHHHHHHhCCCCcceeEEEe------ecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 266 GKLIADIKANTPGIENVVISTH------CQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 266 ~~li~~l~~~~~~~~~v~i~~H------~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
.+.|+.+++...+..++.|-.= ..+.+--++.-+.++.++|||.|-.
T Consensus 127 ~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v 179 (243)
T cd00377 127 VAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFV 179 (243)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 9999998887653112333332 1245667888888999999998743
No 155
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.35 E-value=1.8 Score=45.08 Aligned_cols=180 Identities=17% Similarity=0.195 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEec--CCCChhH--------HHHHHHHHHHhccccccCCCccceEEeecccchhhH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGF--PAASKED--------FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI 165 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d--------~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI 165 (623)
..=+.++-+++|+.|.+.|+...-.+. |..+|.. .+.+++.++.. |+ +.++. -.....+
T Consensus 34 ~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~--------Gl-~~~t~--~~d~~~~ 102 (260)
T TIGR01361 34 SVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEH--------GL-PVVTE--VMDPRDV 102 (260)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHh--------CC-CEEEe--eCChhhH
Confidence 334788899999999999988555432 6655422 23333444332 22 22221 1234455
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHH
Q 006969 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK 245 (623)
Q Consensus 166 ~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~ 245 (623)
+.+.+. .+.+.| +..+... .+.++++.+.|.. |.++- +...+++.+...++.+.+
T Consensus 103 ~~l~~~-----~d~lkI--~s~~~~n---------------~~LL~~~a~~gkP-Vilk~--G~~~t~~e~~~Ave~i~~ 157 (260)
T TIGR01361 103 EIVAEY-----ADILQI--GARNMQN---------------FELLKEVGKQGKP-VLLKR--GMGNTIEEWLYAAEYILS 157 (260)
T ss_pred HHHHhh-----CCEEEE--CcccccC---------------HHHHHHHhcCCCc-EEEeC--CCCCCHHHHHHHHHHHHH
Confidence 544332 354443 3332111 1356666677875 77753 223478888888888889
Q ss_pred cCCcEEeecCc-c-cc-cCHHHHH--HHHHHHHHhCCCCcceeEEE-eec--CCcchHHHHHHHHHHhCCC--EEEeccC
Q 006969 246 VGATTLNIPDT-V-GI-TMPTEFG--KLIADIKANTPGIENVVIST-HCQ--NDLGLSTANTIAGACAGAR--QVEVTIN 315 (623)
Q Consensus 246 aGa~~I~l~DT-v-G~-~~P~~v~--~li~~l~~~~~~~~~v~i~~-H~H--ND~GlAvANslaAv~aGA~--~Vd~Tv~ 315 (623)
.|...|.|+.. + .+ -.|...- ..+..+++.+. +||++ =.| .+.-+...-+++|+..||+ .|+.-+.
T Consensus 158 ~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~----~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 158 SGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETH----LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred cCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhC----CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 99988888874 2 43 3333333 34667777653 45777 344 3233456778899999999 5665443
No 156
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=92.35 E-value=10 Score=35.91 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhHcCCCEEEEecCCCChhHH-----HHHHHHHHHhccccccCCCccceEEeec-ccchhhHHHHHHHHhc
Q 006969 101 KEKLDIARQLAKLGVDIIEAGFPAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLS-RCNERDIKTAWEAVKY 174 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~-r~~~~dI~~a~eal~~ 174 (623)
+.-.++++.+.+.|++.|+++++..++.+. +.++.+.+..+ .|.+..+. ....+.+......++.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETD---------LPLGVQLAINDAAAAVDIAAAAARA 82 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcC---------CcEEEEEccCCchhhhhHHHHHHHH
Confidence 566889999999999999999865444321 22444444321 12222222 1122222211223455
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 006969 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (623)
Q Consensus 175 a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~--G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~ 252 (623)
+|.+.|++....... .+...+.++.+++. ++. +......- .+.+.. .+.+.|++.|.
T Consensus 83 ~g~d~v~l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~-v~~~~~~~--~~~~~~-----~~~~~g~d~i~ 141 (200)
T cd04722 83 AGADGVEIHGAVGYL-------------AREDLELIRELREAVPDVK-VVVKLSPT--GELAAA-----AAEEAGVDEVG 141 (200)
T ss_pred cCCCEEEEeccCCcH-------------HHHHHHHHHHHHHhcCCce-EEEEECCC--Cccchh-----hHHHcCCCEEE
Confidence 689998876554321 12233444555554 443 43322111 111100 15678999998
Q ss_pred ecCcccccC----HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHHHHHHHhCCCEEEe
Q 006969 253 IPDTVGITM----PTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANTIAGACAGARQVEV 312 (623)
Q Consensus 253 l~DTvG~~~----P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANslaAv~aGA~~Vd~ 312 (623)
+....+... +......+..++... + ++|.. +-|... .|...++++||+.|..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~pi~~----~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 142 LGNGGGGGGGRDAVPIADLLLILAKRGS-K---VPVIA----GGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred EcCCcCCCCCccCchhHHHHHHHHHhcC-C---CCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence 865444221 111123344444432 2 34443 456666 7788888999998864
No 157
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.29 E-value=17 Score=38.22 Aligned_cols=196 Identities=12% Similarity=0.100 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHhHc-CCCEEEEe-----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHH
Q 006969 97 TLTSKEKLDIARQLAKL-GVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~-Gvd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (623)
.+..+.-.++++.|.+. |++-|=++ |+.-+.+|+ +.++...+... +.++.|++.+..+.++.-...
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-------~~~~viagv~~~~~~~ai~~a 89 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-------GKVTLIAHVGSLNLKESQELA 89 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------CCCeEEeccCCCCHHHHHHHH
Confidence 37888889999999999 99988663 355566664 45555565532 234678877765555543333
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC--CCCCCHHHHHHHHHHHHHcC
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed--a~r~d~e~l~~~~~~~~~aG 247 (623)
+..+++|++.+-+..|.. ++.|.+++++-..+..+... ++..+.|+.-. +...+++.+.+++ + -
T Consensus 90 ~~a~~~Gad~v~~~~P~y-------~~~~~~~i~~~~~~v~~a~~--~lpi~iYn~P~~tg~~l~~~~~~~L~----~-~ 155 (288)
T cd00954 90 KHAEELGYDAISAITPFY-------YKFSFEEIKDYYREIIAAAA--SLPMIIYHIPALTGVNLTLEQFLELF----E-I 155 (288)
T ss_pred HHHHHcCCCEEEEeCCCC-------CCCCHHHHHHHHHHHHHhcC--CCCEEEEeCccccCCCCCHHHHHHHh----c-C
Confidence 445677999887665542 34577777776665554321 34434564323 3344566555444 3 4
Q ss_pred CcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHH
Q 006969 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (623)
Q Consensus 248 a~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lE 327 (623)
...+.+.|+.|- ...+.+++ +..++ +. .-+-+.++ ..+.++..|++.. +.| .+|.-.|
T Consensus 156 pnivgiK~s~~d--~~~~~~~~----~~~~~--~~-~v~~G~d~------~~~~~~~~G~~G~---i~~----~~n~~P~ 213 (288)
T cd00954 156 PNVIGVKFTATD--LYDLERIR----AASPE--DK-LVLNGFDE------MLLSALALGADGA---IGS----TYNVNGK 213 (288)
T ss_pred CCEEEEEeCCCC--HHHHHHHH----HhCCC--Cc-EEEEechH------HHHHHHHcCCCEE---EeC----hhhhCHH
Confidence 689999999884 34444433 34442 11 12233332 2345678898764 333 4577777
Q ss_pred HHHHHHHh
Q 006969 328 EVVMAFKC 335 (623)
Q Consensus 328 evv~~L~~ 335 (623)
.++...+.
T Consensus 214 ~~~~l~~~ 221 (288)
T cd00954 214 RYRKIFEA 221 (288)
T ss_pred HHHHHHHH
Confidence 76665554
No 158
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.29 E-value=13 Score=39.12 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.+..+.-.++++.|.+.||+-|=++ |+.-+.+|+ +.++...+... +.+|.|++.+.+..+-++.+ +
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-------~~~pvi~gv~~~t~~~i~~a-~ 88 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-------GRVPVLAGAGYGTATAIAYA-Q 88 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------CCCCEEEecCCCHHHHHHHH-H
Confidence 3788888999999999999988663 355566665 45555555542 23467777764333333333 3
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
....+|++.+-+.-|.. +..+.+++++-..+..+. .++..+.|+. .....+++.+.+++ +.-...
T Consensus 89 ~a~~~Gad~v~~~pP~y-------~~~~~~~i~~~f~~v~~~---~~~pi~lYn~-~g~~l~~~~l~~L~----~~~pni 153 (289)
T cd00951 89 AAEKAGADGILLLPPYL-------TEAPQEGLYAHVEAVCKS---TDLGVIVYNR-ANAVLTADSLARLA----ERCPNL 153 (289)
T ss_pred HHHHhCCCEEEECCCCC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEeC-CCCCCCHHHHHHHH----hcCCCE
Confidence 34567999886644432 234666766666555443 3455455653 23345666665554 323478
Q ss_pred EeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHH
Q 006969 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVV 330 (623)
Q Consensus 251 I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv 330 (623)
+.+.||.| ....+.++++. .++ + +.+-+-. +..-...+.++.+|++.. +.| .+|.-.|.++
T Consensus 154 vgiKds~~--d~~~~~~~~~~----~~~--~--~~v~~G~--~~~d~~~~~~l~~Ga~G~---is~----~~n~~P~~~~ 214 (289)
T cd00951 154 VGFKDGVG--DIELMRRIVAK----LGD--R--LLYLGGL--PTAEVFALAYLAMGVPTY---SSA----VFNFVPEIAL 214 (289)
T ss_pred EEEEeCCC--CHHHHHHHHHh----cCC--C--eEEEeCC--CcchHhHHHHHHCCCCEE---Eec----hhhhhHHHHH
Confidence 99999987 34555555433 332 1 2322221 112234567788898765 333 4577777766
Q ss_pred HHHHh
Q 006969 331 MAFKC 335 (623)
Q Consensus 331 ~~L~~ 335 (623)
...+.
T Consensus 215 ~l~~~ 219 (289)
T cd00951 215 AFYAA 219 (289)
T ss_pred HHHHH
Confidence 65554
No 159
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=92.27 E-value=7.5 Score=37.19 Aligned_cols=148 Identities=18% Similarity=0.107 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHhHcC-----CCEEEEe--cCCCChhH--HHHHHHHHHHhccccccCCCccceEEeecccchhhHH
Q 006969 96 ATLTSKEKLDIARQLAKLG-----VDIIEAG--FPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~G-----vd~IEvG--fP~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (623)
...+.++..+.++.+.+.| ++.+-++ -|...+.+ .+.++.+.+..... ....+...++...-+ +
T Consensus 28 ~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~tn~~~~~-~ 100 (216)
T smart00729 28 RSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLA------DDVEITIETRPGTLT-E 100 (216)
T ss_pred hHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCC------CCeEEEEEeCcccCC-H
Confidence 3457788888888886555 3444443 24444443 35556665542110 001222222211111 2
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CCeEEEcccCC-CCCCHHHHHHHHHHHH
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG-CDDVEFSPEDA-GRSDRKFLYEILGEVI 244 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G-~~~V~f~~eda-~r~d~e~l~~~~~~~~ 244 (623)
..++.++.++.+.+.+.+-+.+-+....+++. ...+.+.+.++.+++.| +. |.+...-+ ...+.+.+.++++.+.
T Consensus 101 ~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~g~~~-v~~~~~~g~~~~~~~~~~~~~~~~~ 177 (216)
T smart00729 101 ELLEALKEAGVNRVSLGVQSGSDEVLKAINRG--HTVEDVLEAVEKLREAGPIK-VSTDLIVGLPGETEEDFEETLKLLK 177 (216)
T ss_pred HHHHHHHHcCCCeEEEecccCCHHHHHHhcCC--CCHHHHHHHHHHHHHhCCcc-eEEeEEecCCCCCHHHHHHHHHHHH
Confidence 23455666788888887776554544444433 23477888999999999 64 55433322 2367889999999999
Q ss_pred HcCCcEEee
Q 006969 245 KVGATTLNI 253 (623)
Q Consensus 245 ~aGa~~I~l 253 (623)
+.|++.|.+
T Consensus 178 ~~~~~~i~~ 186 (216)
T smart00729 178 ELGPDRVSI 186 (216)
T ss_pred HcCCCeEEe
Confidence 999987765
No 160
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.27 E-value=1.3 Score=46.38 Aligned_cols=107 Identities=20% Similarity=0.126 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccc-----------cCHHHHH
Q 006969 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGI-----------TMPTEFG 266 (623)
Q Consensus 198 t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~-----------~~P~~v~ 266 (623)
|.+|+++.+++.++.. .+. |..+.+.++-. +.-+.+.++.+.++|+..|+|-|.++- ..+.++.
T Consensus 62 t~~e~~~~vrrI~~a~---~lP-v~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v 136 (289)
T COG2513 62 TLDEVLADARRITDAV---DLP-VLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMV 136 (289)
T ss_pred cHHHHHHHHHHHHhhc---CCc-eEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHH
Confidence 5788887766655442 344 77888655544 999999999999999999999999984 4677888
Q ss_pred HHHHHHHHhCCCCcceeEE----EeecCCcchHHHHHHHHHHhCCCEE
Q 006969 267 KLIADIKANTPGIENVVIS----THCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 267 ~li~~l~~~~~~~~~v~i~----~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+.|+..++.-++.+ ..|- ...+.-+.-|+.-+.+-++||||.|
T Consensus 137 ~rIkAa~~a~~~~~-fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~i 183 (289)
T COG2513 137 DRIKAAVEARRDPD-FVIIARTDALLVEGLDDAIERAQAYVEAGADAI 183 (289)
T ss_pred HHHHHHHHhccCCC-eEEEeehHHHHhccHHHHHHHHHHHHHcCCcEE
Confidence 88888887765422 2222 2334447778888999999999987
No 161
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.26 E-value=9.7 Score=38.49 Aligned_cols=184 Identities=15% Similarity=0.118 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceE---Eeec--ccc-h---hhH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI---CGLS--RCN-E---RDI 165 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i---~~~~--r~~-~---~dI 165 (623)
+-..+.++-.++++.+.+.|++-+-+- |.. ++...+...... .+...+ +.+. +.. . ..+
T Consensus 15 ~p~~~~~d~~~~~~~~~~~g~~av~v~-~~~-------~~~~~~~~~~~~----~~i~~~~~~~~i~~p~~~~~~~~~~v 82 (235)
T cd00958 15 GPNPGLEDPEETVKLAAEGGADAVALT-KGI-------ARAYGREYAGDI----PLIVKLNGSTSLSPKDDNDKVLVASV 82 (235)
T ss_pred CCCccccCHHHHHHHHHhcCCCEEEeC-hHH-------HHhcccccCCCC----cEEEEECCCCCCCCCCCCchhhhcCH
Confidence 455677888899999999999999883 321 111111110000 111011 0111 111 1 123
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc-cCCC----CCCHHHHHHHH
Q 006969 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG----RSDRKFLYEIL 240 (623)
Q Consensus 166 ~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~-eda~----r~d~e~l~~~~ 240 (623)
+.++ ..|.+.|.+.+...+ .+.++.++.+.+.++.+++.|++ +.+.. -++- ..+.+.+.+.+
T Consensus 83 ~~a~----~~Ga~~v~~~~~~~~--------~~~~~~~~~i~~v~~~~~~~g~~-~iie~~~~g~~~~~~~~~~~i~~~~ 149 (235)
T cd00958 83 EDAV----RLGADAVGVTVYVGS--------EEEREMLEELARVAAEAHKYGLP-LIAWMYPRGPAVKNEKDPDLIAYAA 149 (235)
T ss_pred HHHH----HCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCC-EEEEEeccCCcccCccCHHHHHHHH
Confidence 4333 358887755443322 12467888999999999999987 43311 0111 12346666668
Q ss_pred HHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEe-ecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 241 GEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH-CQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 241 ~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H-~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
+.+.++|||.|.+.=|. .++.+ +.+.+..+- + +.+.-. ..+|..-.+.|.-.++++||+.|-.
T Consensus 150 ~~a~~~GaD~Ik~~~~~---~~~~~----~~i~~~~~~-p-vv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 150 RIGAELGADIVKTKYTG---DAESF----KEVVEGCPV-P-VVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred HHHHHHCCCEEEecCCC---CHHHH----HHHHhcCCC-C-EEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 88889999999985332 23444 444444431 1 222211 2345555789999999999998744
No 162
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=92.18 E-value=17 Score=38.52 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----hH-HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 169 (623)
.++.+.-..+.+.-.+++.+.|=-.+|.... +. ...++.+++..+- -+|+..=|=.+ ..++|.+|+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~-------~VPV~lHLDHg~~~e~i~~ai 97 (288)
T TIGR00167 25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPY-------GVPVALHLDHGASEEDCAQAV 97 (288)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccC-------CCcEEEECCCCCCHHHHHHHH
Confidence 4678999999999999999977554554322 11 1334444443200 13443333333 345666666
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccC--------CCCCCHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED--------AGRSDRKF 235 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~ed--------a~r~d~e~ 235 (623)
++ |...|.+=.|. .+.+||++..++.+++|+..|+. |+- +-|| ...|+|+.
T Consensus 98 ~~----GftSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~~~~~T~pee 162 (288)
T TIGR00167 98 KA----GFSSVMIDGSH----------EPFEENIELTKKVVERAHKMGVS-VEAELGTLGGEEDGVSVADESALYTDPEE 162 (288)
T ss_pred Hc----CCCEEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCE-EEEEEeeccCccCCcccccccccCCCHHH
Confidence 64 88877542222 46799999999999999999985 532 2222 22678887
Q ss_pred HHHHHHHHHHcCCcEEeec--Cccccc--CHH-HHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 236 LYEILGEVIKVGATTLNIP--DTVGIT--MPT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~--DTvG~~--~P~-~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
+.++++ +-|+|.+-++ -.=|.- .|. -=.++++.+++.++ +||.+|+ ..|+.-.+-..|+..|+.-|
T Consensus 163 a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~----vPLVlHG--gSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 163 AKEFVK---LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN----LPLVLHG--GSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred HHHHHh---ccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHHHHHHcCCeEE
Confidence 766664 4588876553 222222 354 23457778888773 6788776 45777788889999998876
Q ss_pred E
Q 006969 311 E 311 (623)
Q Consensus 311 d 311 (623)
+
T Consensus 234 N 234 (288)
T TIGR00167 234 N 234 (288)
T ss_pred E
Confidence 3
No 163
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.14 E-value=18 Score=38.31 Aligned_cols=182 Identities=19% Similarity=0.172 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---h-hH-HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---K-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~-~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+.+.-.+++...|=--+|... + +. ...++.+++.. -+|...=|=-+ ..+.+.+|++
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~---------~VPV~lHLDHg~~~e~i~~Ai~ 95 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY---------HHPLALHLDHHEKFDDIAQKVR 95 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999997755444321 1 11 24455555542 13433332222 3455666665
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC--------CCCCHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFL 236 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda--------~r~d~e~l 236 (623)
+ |...|.+=.| ..+.|||++..++.+++|+..|.. |+- +.||. ..|+|+..
T Consensus 96 ~----GftSVM~DgS----------~l~~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~~~~~T~peea 160 (284)
T PRK09195 96 S----GVRSVMIDGS----------HLPFAQNISLVKEVVDFCHRFDVS-VEAELGRLGGQEDDLQVDEADALYTDPAQA 160 (284)
T ss_pred c----CCCEEEeCCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEecccCcccCcccccccccCCCHHHH
Confidence 4 8887754222 246799999999999999999974 431 22322 25899888
Q ss_pred HHHHHHHHHcCCcEEeec--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 237 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.++++ +-|+|.+-++ -.=|.. .|.-=.++++.+++.++ +||.+|. -.|+.-..-..|+..|+.-|+
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~----vPLVLHG--gSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK09195 161 REFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN----IPLVLHG--ASGLPTKDIQQTIKLGICKVN 230 (284)
T ss_pred HHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC----CCeEEec--CCCCCHHHHHHHHHcCCeEEE
Confidence 77776 4588865553 222322 35444567888888763 6788766 457778888889999988774
No 164
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.14 E-value=2.3 Score=45.13 Aligned_cols=109 Identities=19% Similarity=0.150 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc-----c------ccCHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-----G------ITMPTEF 265 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv-----G------~~~P~~v 265 (623)
.+.+|.++.+.+.++. ..+. |..+.++++- ++..+.+.++.++++|+..|+|-|.+ | ...++++
T Consensus 61 l~~~e~~~~~~~I~~~---~~iP-viaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~ 135 (292)
T PRK11320 61 TTLDDVLIDVRRITDA---CDLP-LLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEM 135 (292)
T ss_pred CCHHHHHHHHHHHHhc---cCCC-EEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHH
Confidence 4677777777665443 2455 8889977766 99999999999999999999999987 3 2366777
Q ss_pred HHHHHHHHHhCCCCcceeEEEe----ecCCcchHHHHHHHHHHhCCCEEE
Q 006969 266 GKLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 266 ~~li~~l~~~~~~~~~v~i~~H----~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.+.|+..++.-.+. +..|-.= ..+.+--|+.-+.+..+||||.|=
T Consensus 136 ~~kI~Aa~~a~~~~-d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~if 184 (292)
T PRK11320 136 VDRIKAAVDARTDP-DFVIMARTDALAVEGLDAAIERAQAYVEAGADMIF 184 (292)
T ss_pred HHHHHHHHHhccCC-CeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEE
Confidence 77777777653322 1233211 123455677788888889998873
No 165
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.08 E-value=17 Score=37.79 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.+..+.-.++++.|.+.|++-|=+. |+.-+.+|+ +.++..++..+ +.++.+++.+....++.-.-.+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-------~~~~vi~gv~~~~~~~~i~~a~ 86 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-------GRVPVIAGVGANSTREAIELAR 86 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-------CCCeEEEecCCccHHHHHHHHH
Confidence 5788899999999999999998763 344555554 55566666543 2346777777655554333333
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC--CCCCCHHHHHHHHHHHHHcCC
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed--a~r~d~e~l~~~~~~~~~aGa 248 (623)
....+|++.|-+.-|.. +..+.+++++-..+.++. .++..+.|+... +...+++.+.++++ ..
T Consensus 87 ~a~~~Gad~v~v~pP~y-------~~~~~~~~~~~~~~ia~~---~~~pi~iYn~P~~tg~~l~~~~~~~L~~-----~~ 151 (281)
T cd00408 87 HAEEAGADGVLVVPPYY-------NKPSQEGIVAHFKAVADA---SDLPVILYNIPGRTGVDLSPETIARLAE-----HP 151 (281)
T ss_pred HHHHcCCCEEEECCCcC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEECccccCCCCCHHHHHHHhc-----CC
Confidence 44667999887755432 235677766665555553 345544554333 34556776666553 45
Q ss_pred cEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHH
Q 006969 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (623)
Q Consensus 249 ~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEe 328 (623)
..+.+.||.| .+..+.++++.. ++ + +.+-+=+| ...+.++..|++. ++.|+ +|.-.+.
T Consensus 152 ~v~giK~s~~--d~~~~~~~~~~~----~~--~--~~v~~G~d-----~~~~~~l~~G~~G---~i~~~----~n~~p~~ 209 (281)
T cd00408 152 NIVGIKDSSG--DLDRLTRLIALL----GP--D--FAVLSGDD-----DLLLPALALGADG---AISGA----ANVAPKL 209 (281)
T ss_pred CEEEEEeCCC--CHHHHHHHHHhc----CC--C--eEEEEcch-----HHHHHHHHcCCCE---EEehH----HhhCHHH
Confidence 8999999984 556666665543 22 1 33322222 4556778889854 45443 5777777
Q ss_pred HHHHHHh
Q 006969 329 VVMAFKC 335 (623)
Q Consensus 329 vv~~L~~ 335 (623)
++...+.
T Consensus 210 ~~~~~~~ 216 (281)
T cd00408 210 AVALYEA 216 (281)
T ss_pred HHHHHHH
Confidence 7666654
No 166
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=92.04 E-value=8 Score=41.82 Aligned_cols=181 Identities=18% Similarity=0.225 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH-----HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
=+.++-+++|+.|.++|.+.+-.|. |..+|..| +-++.+.+.... .|+ +.++- -....+++...+
T Consensus 104 Es~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~-----~Gl-~v~te--v~d~~~~~~l~~ 175 (335)
T PRK08673 104 ESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE-----TGL-PIVTE--VMDPRDVELVAE 175 (335)
T ss_pred CCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH-----cCC-cEEEe--eCCHHHHHHHHH
Confidence 4899999999999999999776663 77776543 334444332211 133 22221 124555655443
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
. .+.+.| +..+.. + .+.++++-+.|+. |.++- +.-.+++.+...++.+...|-..
T Consensus 176 ~-----vd~lqI--gAr~~~-----------N----~~LL~~va~~~kP-ViLk~--G~~~ti~E~l~A~e~i~~~GN~~ 230 (335)
T PRK08673 176 Y-----VDILQI--GARNMQ-----------N----FDLLKEVGKTNKP-VLLKR--GMSATIEEWLMAAEYILAEGNPN 230 (335)
T ss_pred h-----CCeEEE--Cccccc-----------C----HHHHHHHHcCCCc-EEEeC--CCCCCHHHHHHHHHHHHHcCCCe
Confidence 2 344443 332211 1 1345555567775 77743 22346777778888888889988
Q ss_pred EeecCc--ccc-cCHHHHHH--HHHHHHHhCCCCcceeE-EE--eecCCcchHHHHHHHHHHhCCC--EEEeccC
Q 006969 251 LNIPDT--VGI-TMPTEFGK--LIADIKANTPGIENVVI-ST--HCQNDLGLSTANTIAGACAGAR--QVEVTIN 315 (623)
Q Consensus 251 I~l~DT--vG~-~~P~~v~~--li~~l~~~~~~~~~v~i-~~--H~HND~GlAvANslaAv~aGA~--~Vd~Tv~ 315 (623)
+.||.- .-+ ..|...-+ .+..+++.+. .|+ .. |.=...-+-..-+++|+.+||+ .|+.-..
T Consensus 231 viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~----lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 231 VILCERGIRTFETATRNTLDLSAVPVIKKLTH----LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred EEEEECCCCCCCCcChhhhhHHHHHHHHHhcC----CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 888873 222 22233333 4666776553 345 33 4422333445779999999999 6766554
No 167
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=92.02 E-value=12 Score=38.93 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-+.+..++.++.+.+.|.++|++|......++.+.+..+.+.+.... . .| + .+--.+.+-++.|+++.+ |.
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~----~-~p-l-sIDT~~~~v~eaaL~~~~--G~ 92 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV----D-VP-L-CIDSPNPAAIEAGLKVAK--GP 92 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC----C-CC-E-EEeCCCHHHHHHHHHhCC--CC
Confidence 35677788899999999999999975433445665655554432110 1 12 2 222234555666666533 55
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC--CCCCC----HHHHHHHHHHHHHcCCc--
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSD----RKFLYEILGEVIKVGAT-- 249 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed--a~r~d----~e~l~~~~~~~~~aGa~-- 249 (623)
+.|. ++|-. . +...++++.++++|+. +..-+.+ +...+ .+++.+.++.+.++|..
T Consensus 93 ~iIN---sIs~~--------~-----~~~~~~~~l~~~~g~~-vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~ 155 (261)
T PRK07535 93 PLIN---SVSAE--------G-----EKLEVVLPLVKKYNAP-VVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPE 155 (261)
T ss_pred CEEE---eCCCC--------C-----ccCHHHHHHHHHhCCC-EEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHh
Confidence 5543 44420 0 1122455667788886 4332222 21222 36777788888999983
Q ss_pred EEeecCccc---cc--CHHHHHHHHHHHHHhCCC
Q 006969 250 TLNIPDTVG---IT--MPTEFGKLIADIKANTPG 278 (623)
Q Consensus 250 ~I~l~DTvG---~~--~P~~v~~li~~l~~~~~~ 278 (623)
.|.|==-+| .. ...++-+.++.+++.+|+
T Consensus 156 ~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg 189 (261)
T PRK07535 156 DIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPK 189 (261)
T ss_pred HEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCC
Confidence 555422223 21 134456667778887765
No 168
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.99 E-value=1.7 Score=44.75 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCc-cc-----ccCHHHHHHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT-VG-----ITMPTEFGKLIA 270 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DT-vG-----~~~P~~v~~li~ 270 (623)
.|.+|+++.+.+.++.. .+ .|..+.++++-.++..+.+.++.+.++|+..|+|-|. .| ...++++.+-|+
T Consensus 52 lt~~e~~~~~~~I~~~~---~i-Pv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~ 127 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV---SI-PVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIR 127 (238)
T ss_dssp S-HHHHHHHHHHHHHHS---SS-EEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh---cC-cEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHH
Confidence 47888888777666654 35 4889998777777999999999999999999999999 33 347788888888
Q ss_pred HHHHhCCCCcceeEEEeec------CCcchHHHHHHHHHHhCCCEE
Q 006969 271 DIKANTPGIENVVISTHCQ------NDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 271 ~l~~~~~~~~~v~i~~H~H------ND~GlAvANslaAv~aGA~~V 310 (623)
..++.-.+.+ .-|-.=+- ..+--|+.-+.+..+||||.|
T Consensus 128 Aa~~a~~~~~-~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~i 172 (238)
T PF13714_consen 128 AAVDARRDPD-FVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMI 172 (238)
T ss_dssp HHHHHHSSTT-SEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHhccCCe-EEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 8877543322 33332221 122345556677888899876
No 169
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=91.94 E-value=16 Score=38.67 Aligned_cols=182 Identities=19% Similarity=0.182 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh----hH-HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+++.-.+.+...|=--+|.... .. ...++.+++.. -+|+..=|=.+ ..+++.+|++
T Consensus 23 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~---------~VPValHLDHg~~~e~i~~ai~ 93 (282)
T TIGR01858 23 IHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTY---------NMPLALHLDHHESLDDIRQKVH 93 (282)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999987555553321 11 23444455432 13544333333 3455666666
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccC--------CCCCCHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED--------AGRSDRKFL 236 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~ed--------a~r~d~e~l 236 (623)
+ |...|.+=.| ..+.|||++..++.+++|+..|+. |+- +.|| ...|+|+.+
T Consensus 94 ~----GFtSVM~DgS----------~lp~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~~~~~T~peea 158 (282)
T TIGR01858 94 A----GVRSAMIDGS----------HFPFAQNVKLVKEVVDFCHRQDCS-VEAELGRLGGVEDDLSVDEEDALYTDPQEA 158 (282)
T ss_pred c----CCCEEeecCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEecCCccCCCccccchhccCCHHHH
Confidence 4 8887754332 246799999999999999999974 532 2223 226788888
Q ss_pred HHHHHHHHHcCCcEEeec--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 237 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.++++ +-|+|.+-++ -.=|.- .|.-=.++++.+++.++ +||.+|+ -.|+..-.-..|+..|+.-|+
T Consensus 159 ~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~----iPLVlHG--gSG~~~e~~~~ai~~Gi~KiN 228 (282)
T TIGR01858 159 KEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD----VPLVLHG--ASDVPDEDVRRTIELGICKVN 228 (282)
T ss_pred HHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhC----CCeEEec--CCCCCHHHHHHHHHcCCeEEE
Confidence 77765 5688865553 122221 35444568888888773 6788766 456667788889999988874
No 170
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.92 E-value=14 Score=38.49 Aligned_cols=166 Identities=20% Similarity=0.192 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhHcCCCEEEEe-cCCCChhHHHHHHHHHHHhccccccCCCccceEE-eecccchhhHHHHHHHHhcCCC
Q 006969 100 SKEKLDIARQLAKLGVDIIEAG-FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 100 ~e~Kl~Ia~~L~~~Gvd~IEvG-fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~eal~~a~~ 177 (623)
..+-.++++...+.|.+-|=+= -|.....+.+.++.+.+.+. .|.+. .|. ..+..|+.+.+ +|.
T Consensus 69 ~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~---------iPvl~kdfi-~~~~qi~~a~~----~GA 134 (260)
T PRK00278 69 DFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVS---------LPVLRKDFI-IDPYQIYEARA----AGA 134 (260)
T ss_pred CCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcC---------CCEEeeeec-CCHHHHHHHHH----cCC
Confidence 3355789999999999988661 12222233455666655431 13331 111 12334555554 599
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecC-c
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD-T 256 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~D-T 256 (623)
+.|++....-+ .+.+.+.+++++++|+. +.+.. .+.+.+ +.+.++|++.|.+-- +
T Consensus 135 D~VlLi~~~l~--------------~~~l~~li~~a~~lGl~-~lvev-----h~~~E~----~~A~~~gadiIgin~rd 190 (260)
T PRK00278 135 DAILLIVAALD--------------DEQLKELLDYAHSLGLD-VLVEV-----HDEEEL----ERALKLGAPLIGINNRN 190 (260)
T ss_pred CEEEEEeccCC--------------HHHHHHHHHHHHHcCCe-EEEEe-----CCHHHH----HHHHHcCCCEEEECCCC
Confidence 99988765411 14567889999999986 44433 222322 446688999988753 1
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 257 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 257 vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.....|. .+.+..+.+.+|+...+.-+-..++ -.+...+.++||+.|
T Consensus 191 l~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~t-----~ed~~~~~~~Gad~v 237 (260)
T PRK00278 191 LKTFEVD--LETTERLAPLIPSDRLVVSESGIFT-----PEDLKRLAKAGADAV 237 (260)
T ss_pred cccccCC--HHHHHHHHHhCCCCCEEEEEeCCCC-----HHHHHHHHHcCCCEE
Confidence 1122222 2234444444553101122223333 567778888999886
No 171
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.83 E-value=20 Score=38.02 Aligned_cols=184 Identities=18% Similarity=0.146 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----h-HHHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----E-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----~-d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 169 (623)
.++.+.-..+.+.-.+++.+.|=--+|.... . -...++.+++.... -+|...=|=.+ ..+++.+|+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------~vPV~lHLDHg~~~e~i~~ai 97 (286)
T PRK08610 25 LNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNI-------TIPVAIHLDHGSSFEKCKEAI 97 (286)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-------CCCEEEECCCCCCHHHHHHHH
Confidence 4678899999999999999977554553221 1 12345555543210 02433333222 345566666
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC------CCCCHHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKFLY 237 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda------~r~d~e~l~ 237 (623)
++ |...|.+=.| ..+.|||++..++.+++|+..|.. |+- +.||. ..|+|+...
T Consensus 98 ~~----GftSVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~yT~peea~ 162 (286)
T PRK08610 98 DA----GFTSVMIDAS----------HSPFEENVATTKKVVEYAHEKGVS-VEAELGTVGGQEDDVVADGIIYADPKECQ 162 (286)
T ss_pred Hc----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeccCCccCCCCCcccccCCHHHHH
Confidence 54 8887754332 246899999999999999999974 542 23332 258999888
Q ss_pred HHHHHHHHcCCcEEeec--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 238 EILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
++++ +-|+|.+-++ -.=|.- .|.-=.++++.+++.++ +||.+|+ -.|+..-+-..|+..|+.-|+
T Consensus 163 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~----vPLVLHG--gSG~~~e~~~~ai~~GI~KiN 231 (286)
T PRK08610 163 ELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG----LPLVLHG--GTGIPTKDIQKAIPFGTAKIN 231 (286)
T ss_pred HHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC----CCEEEeC--CCCCCHHHHHHHHHCCCeEEE
Confidence 8775 4588865543 122221 35434567777887763 6788765 577778888899999988763
No 172
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=91.83 E-value=4.3 Score=43.79 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=86.2
Q ss_pred HHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC--EEEEEec
Q 006969 108 RQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP--RIHTFIA 185 (623)
Q Consensus 108 ~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~--~v~i~~~ 185 (623)
+.|.++|++.|-+|+.- -.++.+++.+++.. .|.|..-+.+..++|+.|++.++..|.+ .|.+.-.
T Consensus 103 d~l~~~~v~~~KIaS~~--~~n~pLL~~~A~~g----------kPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC 170 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGE--ITNAPLLKKIARFG----------KPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHC 170 (329)
T ss_pred HHHHhcCCCEEEECccc--ccCHHHHHHHHhcC----------CcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEE
Confidence 44445555555555432 23577888887741 2677777778999999999999887865 2444323
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe--------e--c
Q 006969 186 TSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN--------I--P 254 (623)
Q Consensus 186 ~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~-~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~--------l--~ 254 (623)
+|. +-.++++ ++ ...+..+++ .++. |.|+- .+. . ..+..+++.+||+.|- + +
T Consensus 171 ~s~------YP~~~~~-~n--L~~I~~Lk~~f~~p-VG~Sd----Ht~-G--~~~~~aAvalGA~iIEkH~tldk~~~G~ 233 (329)
T TIGR03569 171 TTE------YPAPFED-VN--LNAMDTLKEAFDLP-VGYSD----HTL-G--IEAPIAAVALGATVIEKHFTLDKNLPGP 233 (329)
T ss_pred CCC------CCCCccc-CC--HHHHHHHHHHhCCC-EEECC----CCc-c--HHHHHHHHHcCCCEEEeCCChhhcCCCC
Confidence 331 2222222 11 133444444 4554 77742 121 2 2566778889998552 3 5
Q ss_pred CcccccCHHHHHHHHHHHHHh
Q 006969 255 DTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 255 DTvG~~~P~~v~~li~~l~~~ 275 (623)
|-.=.+.|.++.++++.+++.
T Consensus 234 D~~~Sl~p~el~~lv~~ir~~ 254 (329)
T TIGR03569 234 DHKASLEPDELKEMVQGIRNV 254 (329)
T ss_pred ChhhcCCHHHHHHHHHHHHHH
Confidence 777789999999999999874
No 173
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.77 E-value=10 Score=38.92 Aligned_cols=179 Identities=20% Similarity=0.192 Sum_probs=104.8
Q ss_pred HHHHhHcCCCEEEEec---------CCCCh---hH-HHHHHHHHHHhccccccCCCccceEE----eecccchhhHHHHH
Q 006969 107 ARQLAKLGVDIIEAGF---------PAASK---ED-FEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 169 (623)
Q Consensus 107 a~~L~~~Gvd~IEvGf---------P~~s~---~d-~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 169 (623)
++.++++|++.|=+|. |-... ++ .+.++.|.+... .|.++ |++ ...++.+..
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~---------~Pv~~D~~~G~g--~~~~~~~~v 90 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVD---------LPVIADADTGYG--NALNVARTV 90 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhcc---------CCEEEEcCCCCC--CHHHHHHHH
Confidence 6777888999998863 42222 11 355555555321 13222 233 445666666
Q ss_pred HHHhcCCCCEEEEEecCCHHHH---HHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEcccCCC---CCCHHHHHHHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHM---EHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAG---RSDRKFLYEILGE 242 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~---~~~l~~t~ee~l~~~~~~v~~ak~~G~~~-V~f~~eda~---r~d~e~l~~~~~~ 242 (623)
+.+..+|+..|++-....+-+. ..+.-.+.+|..++++.+++.+.+. .+. |..-. |+. ....+..++-+++
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiART-Da~~~~~~~~~eai~Ra~a 168 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIART-DALLAGEEGLDEAIERAKA 168 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEc-CchhccCCCHHHHHHHHHH
Confidence 6666689999998555543221 1122348899999888887777664 232 22222 322 2467889999999
Q ss_pred HHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 243 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 243 ~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
..++|||.+.+. |..+++++.++.+. .+ .|+-+-...... .-+.-.--+.|+++|-
T Consensus 169 y~~AGAD~v~v~---~~~~~~~~~~~~~~----~~----~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~ 224 (243)
T cd00377 169 YAEAGADGIFVE---GLKDPEEIRAFAEA----PD----VPLNVNMTPGGN--LLTVAELAELGVRRVS 224 (243)
T ss_pred HHHcCCCEEEeC---CCCCHHHHHHHHhc----CC----CCEEEEecCCCC--CCCHHHHHHCCCeEEE
Confidence 999999999985 33366666666554 33 456665544322 1122333445777664
No 174
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=91.75 E-value=4 Score=42.05 Aligned_cols=153 Identities=19% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhc
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 174 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ 174 (623)
...|+.++=.++.+...+.|++.+---| +++ .+..+.+. +.. . -+|....-.+..-++ .+..
T Consensus 50 ~~el~~e~~~~L~~~~~~~gi~f~stpf---d~~---s~d~l~~~-~~~-----~--~KIaS~dl~n~~lL~----~~A~ 111 (241)
T PF03102_consen 50 KLELSEEQHKELFEYCKELGIDFFSTPF---DEE---SVDFLEEL-GVP-----A--YKIASGDLTNLPLLE----YIAK 111 (241)
T ss_dssp HHSS-HHHHHHHHHHHHHTT-EEEEEE----SHH---HHHHHHHH-T-S-----E--EEE-GGGTT-HHHHH----HHHT
T ss_pred HhcCCHHHHHHHHHHHHHcCCEEEECCC---CHH---HHHHHHHc-CCC-----E--EEeccccccCHHHHH----HHHH
Confidence 3569999999999999999998876644 333 34433332 110 0 133222212222222 2222
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccCCCCCCHHHHHHHHHHHHHcCCcEEee
Q 006969 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 175 a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~~eda~r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
.|.|.| +.. |++. ++.+.++|+..++.|...+.+ .+...+.+.++.+ ||
T Consensus 112 tgkPvI-lST-----------G~st---l~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~---------------NL 161 (241)
T PF03102_consen 112 TGKPVI-LST-----------GMST---LEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDV---------------NL 161 (241)
T ss_dssp T-S-EE-EE------------TT-----HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG-----------------T
T ss_pred hCCcEE-EEC-----------CCCC---HHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHc---------------Ch
Confidence 354432 222 2221 233444444444444332322 3324445544322 11
Q ss_pred cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE--EeccC
Q 006969 254 PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV--EVTIN 315 (623)
Q Consensus 254 ~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V--d~Tv~ 315 (623)
..|..|++.++ +++|+=-|-. | +.-+++|+..||..| |.|+.
T Consensus 162 -------------~~i~~L~~~f~----~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTld 205 (241)
T PF03102_consen 162 -------------RVIPTLKERFG----VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLD 205 (241)
T ss_dssp -------------THHHHHHHHST----SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-
T ss_pred -------------HHHHHHHHhcC----CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECC
Confidence 25788899996 6799999987 4 455889999999998 45554
No 175
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.74 E-value=1.6 Score=44.92 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHh
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
.|.+|++..++...+-+.. . .|..+.++++-.+++.+.+.+++++++||+.|.|-|.. ++.+.|+.+++.
T Consensus 55 vtl~em~~~~~~I~r~~~~--~-pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a 124 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPL--A-LIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------WHIETLQMLTAA 124 (240)
T ss_pred cCHHHHHHHHHHHHhhCCC--C-CEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------HHHHHHHHHHHc
Confidence 4677777666555444321 2 37788877777788999999999999999999999973 456677777764
No 176
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.72 E-value=6.8 Score=39.73 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=93.8
Q ss_pred HHHHHHHHHhHcCCCEEEEecCC----CChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 102 EKLDIARQLAKLGVDIIEAGFPA----ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 102 ~Kl~Ia~~L~~~Gvd~IEvGfP~----~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
+=+++++.+.+.|++.+.+=--. .....++.++.+++.... |.+.+=+--..+|++.++++ |+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~---------~l~v~GGi~~~~~~~~~~~~----Ga 99 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGV---------PVQLGGGIRSAEDAASLLDL----GV 99 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCC---------cEEEcCCcCCHHHHHHHHHc----CC
Confidence 46778888999999988764221 223456788888775321 22222222246777777664 88
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--c------CCCCCCH-HHHHHHHHHHHHcCC
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--E------DAGRSDR-KFLYEILGEVIKVGA 248 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~--e------da~r~d~-e~l~~~~~~~~~aGa 248 (623)
+.|++-.... .+ .+.+.+.++. .|.+.+.++. . .+...+. ....++++.+.++|+
T Consensus 100 ~~v~iGs~~~---------~~----~~~~~~i~~~---~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~ 163 (241)
T PRK13585 100 DRVILGTAAV---------EN----PEIVRELSEE---FGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGA 163 (241)
T ss_pred CEEEEChHHh---------hC----hHHHHHHHHH---hCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCC
Confidence 8887632211 01 1222233222 3322222211 0 1111111 134567777788999
Q ss_pred cEEeecCc--ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH-HHHHHHHHHhCCCEEEe
Q 006969 249 TTLNIPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGACAGARQVEV 312 (623)
Q Consensus 249 ~~I~l~DT--vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlA-vANslaAv~aGA~~Vd~ 312 (623)
+.|.+-|+ .|...+. -.++++.+++.++ +|+-.-. |.. ..+.....+.||+.|-.
T Consensus 164 ~~i~~~~~~~~g~~~g~-~~~~i~~i~~~~~----iPvia~G----GI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 164 GSILFTNVDVEGLLEGV-NTEPVKELVDSVD----IPVIASG----GVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CEEEEEeecCCCCcCCC-CHHHHHHHHHhCC----CCEEEeC----CCCCHHHHHHHHHcCCCEEEE
Confidence 99998776 5655553 2346777777663 3444433 222 34455567789988643
No 177
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=91.71 E-value=2.5 Score=44.78 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCccc-----------ccCHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEF 265 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG-----------~~~P~~v 265 (623)
.+.+|.++.+.++++.. .+. |..+.++++-..++ +.+.++.++++|+..|+|-|.++ ...++++
T Consensus 60 l~~~e~~~~~~~I~~~~---~lP-v~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~ 134 (294)
T TIGR02319 60 TSVSEQAINAKNIVLAV---DVP-VIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEM 134 (294)
T ss_pred CCHHHHHHHHHHHHhcc---CCC-EEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHH
Confidence 46777777666555443 455 88899877777766 78999999999999999999874 3456777
Q ss_pred HHHHHHHHHhCCCCcceeEEEe----ecCCcchHHHHHHHHHHhCCCEE
Q 006969 266 GKLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 266 ~~li~~l~~~~~~~~~v~i~~H----~HND~GlAvANslaAv~aGA~~V 310 (623)
.+.|+..++.-.+. +..|-.= ...++--++.-+.+..++|||.|
T Consensus 135 ~~kI~Aa~~A~~~~-d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~i 182 (294)
T TIGR02319 135 TGKIEAAVEAREDE-DFTIIARTDARESFGLDEAIRRSREYVAAGADCI 182 (294)
T ss_pred HHHHHHHHHhccCC-CeEEEEEecccccCCHHHHHHHHHHHHHhCCCEE
Confidence 77777777643321 1222211 12244557777777888888876
No 178
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.71 E-value=3 Score=44.08 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=50.9
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCHHHHHHH
Q 006969 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYEI 239 (623)
Q Consensus 161 ~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~e~l~~~ 239 (623)
..+|+..+.+.+.+.+.+.|.+-++....-..+..+....+.-+.+.+.++.+++. .+. |.+=. +.+.+.+.++
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~P-v~vKl----~~~~~~~~~~ 185 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIP-VIAKL----TPNITDIREI 185 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCC-eEEEC----CCCchhHHHH
Confidence 56666666665555677776665543322111122221112223444555555543 233 43321 1233467789
Q ss_pred HHHHHHcCCcEEeecCcccc
Q 006969 240 LGEVIKVGATTLNIPDTVGI 259 (623)
Q Consensus 240 ~~~~~~aGa~~I~l~DTvG~ 259 (623)
++.+.++|++.|.+-.|...
T Consensus 186 a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 186 ARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred HHHHHHcCCCEEEEeccccc
Confidence 99999999999998776643
No 179
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=91.70 E-value=21 Score=40.78 Aligned_cols=178 Identities=12% Similarity=0.095 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCCEE
Q 006969 101 KEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRI 180 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v 180 (623)
++-++-++.+.+.|.|+|.+|.....|. .+.+..+.+.+.... + +| | +.=-.+.+-+++|+++ |++.|
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~-~~~v~~~V~~l~~~~----~-~p-I-SIDT~~~~v~eaAL~a----GAdiI 232 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDD-PDVVKEKVKTALDAL----D-SP-V-IADTPTLDELYEALKA----GASGV 232 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCc-HHHHHHHHHHHHhhC----C-Cc-E-EEeCCCHHHHHHHHHc----CCCEE
Confidence 7788889999999999999998655443 222333332221110 0 11 2 2222356667777765 77765
Q ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCccccc
Q 006969 181 HTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGIT 260 (623)
Q Consensus 181 ~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~ 260 (623)
. +.|. ..++ ++...+++.|+. +..-+.+ ...+.+++.+.++.+.++|.+.|. .|-.=..
T Consensus 233 N---sVs~------------~~~d---~~~~l~a~~g~~-vVlm~~~-~~~~~~~l~~~ie~a~~~Gi~~II-lDPglg~ 291 (499)
T TIGR00284 233 I---MPDV------------ENAV---ELASEKKLPEDA-FVVVPGN-QPTNYEELAKAVKKLRTSGYSKVA-ADPSLSP 291 (499)
T ss_pred E---ECCc------------cchh---HHHHHHHHcCCe-EEEEcCC-CCchHHHHHHHHHHHHHCCCCcEE-EeCCCCc
Confidence 4 4442 1122 455666777875 5554432 233458999999999999996543 3432222
Q ss_pred CHHHHHHHHHHHH---HhCCCCcceeEEEe-e-----cCCcchHHHHHHHHHHhCCCEEEec
Q 006969 261 MPTEFGKLIADIK---ANTPGIENVVISTH-C-----QNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 261 ~P~~v~~li~~l~---~~~~~~~~v~i~~H-~-----HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
.+.++.+-+..++ +.++ . .+-+|+= . =+..|.-.+-+..|++.||+.|=++
T Consensus 292 ~~~~l~~sL~~l~~~r~~~~-~-Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvh 351 (499)
T TIGR00284 292 PLLGLLESIIRFRRASRLLN-V-PLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVV 351 (499)
T ss_pred chHHHHHHHHHHHHHHHhcC-C-cEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEc
Confidence 3444555444444 4554 2 1334431 0 0223334444456788888887444
No 180
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=91.70 E-value=11 Score=39.75 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=49.5
Q ss_pred cchhhHHHHHHHHhcCC--CCEEEEEecCCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCHHH
Q 006969 160 CNERDIKTAWEAVKYAK--RPRIHTFIATSGI-HMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKF 235 (623)
Q Consensus 160 ~~~~dI~~a~eal~~a~--~~~v~i~~~~Sd~-h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~e~ 235 (623)
...+++..+.+.+..++ ++.|.+-++.... ..-..+..+.+ .+.+.++.+|+. ++. |.+-. +.+.+.
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~----~~~eiv~~vr~~~~~p-v~vKi----~~~~~~ 170 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPE----LSADVVKAVKDKTDVP-VFAKL----SPNVTD 170 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHH----HHHHHHHHHHHhcCCC-EEEEC----CCChhh
Confidence 45677777777666542 6777665443211 00112333433 344555555543 343 43322 123456
Q ss_pred HHHHHHHHHHcCCcEEeecCcc
Q 006969 236 LYEILGEVIKVGATTLNIPDTV 257 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~DTv 257 (623)
..++++.+.++|+|.|.+-.|+
T Consensus 171 ~~~~a~~l~~~G~d~i~v~nt~ 192 (300)
T TIGR01037 171 ITEIAKAAEEAGADGLTLINTL 192 (300)
T ss_pred HHHHHHHHHHcCCCEEEEEccC
Confidence 7788899999999999886554
No 181
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=91.65 E-value=20 Score=38.95 Aligned_cols=174 Identities=17% Similarity=0.139 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+++.-.+++...|=-.+|.... .+ ...++.+++... -+|...=|=-+ ..+.+.+|++
T Consensus 23 ~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~--------~VPValHLDHg~~~e~i~~Ai~ 94 (347)
T TIGR01521 23 VNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYP--------HIPVVMHQDHGNSPATCQRAIQ 94 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCC--------CCcEEEECCCCCCHHHHHHHHH
Confidence 4688999999999999999988665664322 11 234445554321 02433322222 3455666655
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccc-------C----------
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPE-------D---------- 227 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~e-------d---------- 227 (623)
+ |...|.+=.|.-+ ..+...+.+||++..++.|++|+..|+. |+- +.| |
T Consensus 95 ~----GFtSVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~Gvs-VEaELG~igg~e~~~~g~~d~~~~~~~~~~ 166 (347)
T TIGR01521 95 L----GFTSVMMDGSLRE---DAKTPADYDYNVRVTAEVVAFAHAVGAS-VEGELGCLGSLETGMGEAEDGHGFEGVLDH 166 (347)
T ss_pred c----CCCEEeecCcCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeecccccccccccccCcccccccch
Confidence 4 8887754322211 1233457899999999999999999974 532 122 2
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCcEEeec--Cccccc----CHH---HHHHHHHHHHHhCCCCcceeEEEeecCCc
Q 006969 228 -AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT----MPT---EFGKLIADIKANTPGIENVVISTHCQNDL 292 (623)
Q Consensus 228 -a~r~d~e~l~~~~~~~~~aGa~~I~l~--DTvG~~----~P~---~v~~li~~l~~~~~~~~~v~i~~H~HND~ 292 (623)
...|+|+.+.+++++ -|+|.+-++ -.=|.. .|. -=.++++.+++.++ ++||.+|.=-..
T Consensus 167 ~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~---~vPLVLHGgSG~ 235 (347)
T TIGR01521 167 SQLLTDPEEAADFVKK---TKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP---DTHLVMHGSSSV 235 (347)
T ss_pred hhcCCCHHHHHHHHHH---HCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC---CCCEEEeCCCCC
Confidence 226788887777664 477755443 223333 242 12345688888874 378998875543
No 182
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=91.43 E-value=49 Score=41.86 Aligned_cols=212 Identities=15% Similarity=0.145 Sum_probs=119.4
Q ss_pred CCHHHHHHH----HHHHhHcCCCEEEEe-cCCCChhHHHHHHHHHHHh-ccccccCCCccceEEeecccch-------hh
Q 006969 98 LTSKEKLDI----ARQLAKLGVDIIEAG-FPAASKEDFEAVRTIAKEV-GNAVDAESGYVPVICGLSRCNE-------RD 164 (623)
Q Consensus 98 ~t~e~Kl~I----a~~L~~~Gvd~IEvG-fP~~s~~d~e~v~~i~~~~-~~~~~~~~~l~~~i~~~~r~~~-------~d 164 (623)
++.++-.+. ++.|.+.|||.|=+- +| +..+..++-..++.. ..... . .|.++.++-... .+
T Consensus 157 it~del~~~y~eQi~~L~e~GVDllliETi~--d~~EakAal~a~~~~~~~~~~---~-lPv~vS~T~~d~~Gr~lsG~~ 230 (1229)
T PRK09490 157 VTFDELVAAYREQTRGLIEGGADLILIETIF--DTLNAKAAIFAVEEVFEELGV---R-LPVMISGTITDASGRTLSGQT 230 (1229)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeeeC--CHHHHHHHHHHHHHHHhhcCC---C-CeEEEEEEEECCCCccCCCCc
Confidence 566666665 677888999987664 34 233332222222211 00000 1 245555442111 35
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccc-------CCCCCCHHHH
Q 006969 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPE-------DAGRSDRKFL 236 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~e-------da~r~d~e~l 236 (623)
++.++..+...+...|.+-++..+-++. ..++.+.+. .+ .+.+.|- ..+..+|+++
T Consensus 231 ~ea~~~~l~~~~~~avGlNCs~GP~~m~---------------~~l~~l~~~~~~-pi~vyPNAGlP~~~~~yd~tPe~~ 294 (1229)
T PRK09490 231 TEAFWNSLRHAKPLSIGLNCALGADELR---------------PYVEELSRIADT-YVSAHPNAGLPNAFGEYDETPEEM 294 (1229)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCcHHHHH---------------HHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCHHHH
Confidence 7777877777788888776665553332 223332222 22 2443331 2345678999
Q ss_pred HHHHHHHHHcC-CcEEeecCcccccCHHHHHHHHHHHHHhCCCCc-ce----------eEEEe-----------ec----
Q 006969 237 YEILGEVIKVG-ATTLNIPDTVGITMPTEFGKLIADIKANTPGIE-NV----------VISTH-----------CQ---- 289 (623)
Q Consensus 237 ~~~~~~~~~aG-a~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~-~v----------~i~~H-----------~H---- 289 (623)
.+.++...+.| +..|.=|= ..+|+.|+.+-+.++..-|... .. ++.+. ++
T Consensus 295 a~~~~~~~~~G~v~IIGGCC---GTtPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~ 371 (1229)
T PRK09490 295 AAQIGEFAESGFLNIVGGCC---GTTPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGS 371 (1229)
T ss_pred HHHHHHHHHcCCCCEEEecC---CCCHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhcc
Confidence 99999999999 77765221 1389999999888875433210 00 01111 11
Q ss_pred ---------CCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 290 ---------NDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 290 ---------ND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
.|+.-++.-+..-+++||+.||..+ |.+.+.+-..++.++..+..
T Consensus 372 k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~-g~~~id~~eem~rvv~~i~~ 425 (1229)
T PRK09490 372 AKFARLIKEEDYDEALDVARQQVENGAQIIDINM-DEGMLDSEAAMVRFLNLIAS 425 (1229)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHh
Confidence 3334666677778899999999975 44445555556666666654
No 183
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=91.42 E-value=20 Score=38.08 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhh-HHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (623)
.+..+.-.++++.|.+.||+-|=+ | |+.-+++|+ +.++...+.+. +.+|.|++.+. ..++ ++.+
T Consensus 24 ~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-------~~~pvi~gv~~-~t~~~i~~~- 94 (303)
T PRK03620 24 SFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-------GRVPVIAGAGG-GTAQAIEYA- 94 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------CCCcEEEecCC-CHHHHHHHH-
Confidence 478888999999999999999866 3 466666665 45555555542 23467777764 3333 3333
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCc
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~ 249 (623)
+....+|++.+-+.-|.. .+.+.+++++-..+.++. .++..+.|+. .+...+++.+.++++ + -..
T Consensus 95 ~~a~~~Gadav~~~pP~y-------~~~~~~~i~~~f~~va~~---~~lpi~lYn~-~g~~l~~~~l~~L~~---~-~pn 159 (303)
T PRK03620 95 QAAERAGADGILLLPPYL-------TEAPQEGLAAHVEAVCKS---TDLGVIVYNR-DNAVLTADTLARLAE---R-CPN 159 (303)
T ss_pred HHHHHhCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHh---CCCCEEEEcC-CCCCCCHHHHHHHHh---h-CCC
Confidence 334567999886654431 244666666655555443 2455455653 234456665555442 2 347
Q ss_pred EEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHH
Q 006969 250 TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEV 329 (623)
Q Consensus 250 ~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEev 329 (623)
.+.+.||.| .+..+.++++.+ ++ +.. -+-+++. .-...+.++.+|++.. +.| .+|...+.+
T Consensus 160 i~giK~s~~--d~~~~~~~~~~~----~~--~f~-vl~G~d~---~e~~~~~~~~~G~~G~---is~----~an~~P~~~ 220 (303)
T PRK03620 160 LVGFKDGVG--DIELMQRIVRAL----GD--RLL-YLGGLPT---AEVFAAAYLALGVPTY---SSA----VFNFVPEIA 220 (303)
T ss_pred EEEEEeCCC--CHHHHHHHHHHc----CC--CeE-EEeCCCc---chhhHHHHHhCCCCEE---Eec----HHhhhHHHH
Confidence 899999977 457777765443 32 111 2233321 1112355677888643 333 457777776
Q ss_pred HHHHHh
Q 006969 330 VMAFKC 335 (623)
Q Consensus 330 v~~L~~ 335 (623)
+...+.
T Consensus 221 ~~l~~~ 226 (303)
T PRK03620 221 LAFYRA 226 (303)
T ss_pred HHHHHH
Confidence 665554
No 184
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=91.31 E-value=14 Score=36.28 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec-----CCCChhHHHHHHHHHHHhccccccCCCccceEEeecccch-hhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGF-----PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-RDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGf-----P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~-~dI~~a~e 170 (623)
.+....-.+.++.+.+.|++.|+++. ....+-.++.++.|.+.. +. +..+.+.-.+. +.++.
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~--------~~~v~l~~~d~~~~~~~--- 75 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DL--------PLDVHLMVENPERYIEA--- 75 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-CC--------cEEEEeeeCCHHHHHHH---
Confidence 45666667788999999999999953 112222346677776543 11 11111221121 22333
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
...+|.+.|.+....+ +...+.++.+++.|.. +.+... ..++.+.+.++.+ +++.
T Consensus 76 -~~~~g~dgv~vh~~~~----------------~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~-----~~d~ 130 (211)
T cd00429 76 -FAKAGADIITFHAEAT----------------DHLHRTIQLIKELGMK-AGVALN--PGTPVEVLEPYLD-----EVDL 130 (211)
T ss_pred -HHHcCCCEEEECccch----------------hhHHHHHHHHHHCCCe-EEEEec--CCCCHHHHHHHHh-----hCCE
Confidence 3356889876543222 1223457888888874 444431 1123344433322 2566
Q ss_pred Eee----cCcccccCHHHHHHHHHHHHHhCCCC-cceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 251 LNI----PDTVGITMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 251 I~l----~DTvG~~~P~~v~~li~~l~~~~~~~-~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
|.+ +-+.|...|+...+.++.+++.++.. .++++.+ +.|.-..|.-.++++||+.|
T Consensus 131 i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v----~GGI~~env~~~~~~gad~i 191 (211)
T cd00429 131 VLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEV----DGGINLETIPLLAEAGADVL 191 (211)
T ss_pred EEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 544 22344455666667777777665310 0134433 34777888889999999986
No 185
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.18 E-value=23 Score=37.51 Aligned_cols=182 Identities=18% Similarity=0.165 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH-H-HHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED-F-EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d-~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+.+.-.+++.+.|=-.+|... +.+ + ..++.+++.. -+|+..=|=-+ ..++|.+|++
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~---------~VPValHLDH~~~~e~i~~ai~ 95 (284)
T PRK12857 25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKA---------SVPVALHLDHGTDFEQVMKCIR 95 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 467888999999999999997755555432 112 2 3455555532 13433333222 3456666666
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC--------CCCCHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFL 236 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda--------~r~d~e~l 236 (623)
+ |...|.+=.|. .+.|||++..++.+++|+..|.. |+- ..||. ..|+|+..
T Consensus 96 ~----GftSVM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gvs-VEaElG~vgg~e~~~~~~~~~~~~T~pe~a 160 (284)
T PRK12857 96 N----GFTSVMIDGSK----------LPLEENIALTKKVVEIAHAVGVS-VEAELGKIGGTEDDITVDEREAAMTDPEEA 160 (284)
T ss_pred c----CCCeEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCE-EEEEeeecCCccCCCCcccchhhcCCHHHH
Confidence 4 88877543222 36799999999999999999974 532 22232 15788888
Q ss_pred HHHHHHHHHcCCcEEeec--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 237 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.++++ +-|+|.+-++ -.=|.. .|.-=.++++.+++.++ +||.+|. -.|+.-.+-..|+..|+.-|+
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~----vPLVlHG--gSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK12857 161 RRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN----IPIVLHG--SSGVPDEAIRKAISLGVRKVN 230 (284)
T ss_pred HHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 77775 4488865543 222222 45555568888888763 6787665 567778888899999988764
No 186
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.15 E-value=9.8 Score=39.61 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=97.0
Q ss_pred HHHHHHHhHcCCCEEEEec---CC------CChhHHHHHHHHHHHhccccccCCCccceEEeecccchh-------hHHH
Q 006969 104 LDIARQLAKLGVDIIEAGF---PA------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-------DIKT 167 (623)
Q Consensus 104 l~Ia~~L~~~Gvd~IEvGf---P~------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~-------dI~~ 167 (623)
...++.+.++|.+.+|+ | |. .++++.+.++...+..+..+.......|-..-++..+++ -+..
T Consensus 14 ~~a~~~~~~~G~~~~qi-f~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~ 92 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMF-FLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDE 92 (274)
T ss_pred HHHHHHHHHhCCCEEEE-EecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHH
Confidence 34678889999999999 4 32 234456667665543221100000001111122221111 1222
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC------CCCCHHHHHHHHH
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA------GRSDRKFLYEILG 241 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda------~r~d~e~l~~~~~ 241 (623)
+++.-...|++.|.+-. -+. ...+.++.++.+.++++.+.+.... |.+..|.. .-.+++.+.++++
T Consensus 93 ~i~~A~~lga~~vv~H~-G~~------~~~~~e~~~~~~~~~l~~l~~~~~~-v~l~lEN~~~~~~~l~~~~~el~~ll~ 164 (274)
T TIGR00587 93 ELKRCELLGIMLYNFHP-GSA------LKCSEEEGLDNLIESLNVVIKETKI-VTILLENMAGQGSELGRSFEELAYIIK 164 (274)
T ss_pred HHHHHHHcCCCEEEECC-CCC------CCCCHHHHHHHHHHHHHHHHhccCC-CEEEEEeCCCCCCccCCCHHHHHHHHH
Confidence 33333334666544322 111 0224566666666666655432111 44444421 1236666666666
Q ss_pred HHHHcCCcEEeecCccccc--------CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcc-hHHHHHHHHHHhCCCEEEe
Q 006969 242 EVIKVGATTLNIPDTVGIT--------MPTEFGKLIADIKANTPGIENVVISTHCQNDLG-LSTANTIAGACAGARQVEV 312 (623)
Q Consensus 242 ~~~~aGa~~I~l~DTvG~~--------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~G-lAvANslaAv~aGA~~Vd~ 312 (623)
.+.. .+.+.+|--+|-+ +++.+.+++..+.+.+.. +-...+|+|+... ++ .| +.-+.
T Consensus 165 ~~~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~--~~i~~vHl~Ds~~~~g---------~~-~d~H~ 230 (274)
T TIGR00587 165 VIVD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGF--KYLKAIHLNDSKNVLG---------SR-KDRHE 230 (274)
T ss_pred hcCC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCH--hheeEEEEEcCccccc---------cC-cCCCC
Confidence 4421 1345555333322 255566666666655421 1234677777531 10 00 11111
Q ss_pred ccCCccCccCcccHHHHHHHHHhcc
Q 006969 313 TINGIGERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 313 Tv~GlGERaGNa~lEevv~~L~~~~ 337 (623)
-+|+ |+.+.+.++..|+...
T Consensus 231 ---~iG~--G~i~~~~~~~~L~~~~ 250 (274)
T TIGR00587 231 ---NIGE--GIIGFDAFRLIMDDER 250 (274)
T ss_pred ---CcCC--ccCCHHHHHHHHcCcc
Confidence 2333 8999999998887653
No 187
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=91.15 E-value=7 Score=43.86 Aligned_cols=177 Identities=18% Similarity=0.200 Sum_probs=101.4
Q ss_pred CCCCHHHHHHHHHHHhHc--CCCEEEEe---cCCCChh-HHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHH
Q 006969 96 ATLTSKEKLDIARQLAKL--GVDIIEAG---FPAASKE-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~--Gvd~IEvG---fP~~s~~-d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (623)
..+|++|.++.++.+.+. +++.|=+. =|-..++ .++.++.+.+..+ ++...|..-+-...+. +
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~-------~i~i~lsTNG~~l~e~----i 126 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLP-------DVKLCLSTNGLMLPEH----V 126 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcC-------CCeEEEECCCCCCHHH----H
Confidence 458999999999988754 45544332 2555543 4677777776521 1111122111112333 3
Q ss_pred HHHhcCCCCEEEEEecCCH--HHHHH---------Hh-CCCHHHH-HHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSG--IHMEH---------KL-RKTKQQV-VEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd--~h~~~---------~l-~~t~ee~-l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l 236 (623)
+.|...|++.|.+-+...+ .|.+. ++ +.+..++ ++...+.++++.+.|+. |.+...-.-..+.+.+
T Consensus 127 ~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~-v~v~~vlIpGiND~~i 205 (442)
T TIGR01290 127 DRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGIL-VKVNSVLIPGINDEHL 205 (442)
T ss_pred HHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCe-EEEEEEeeCCcCHHHH
Confidence 4455568888888776654 44321 11 2223332 57778889999999875 4332111111233789
Q ss_pred HHHHHHHHHcCCcEEee------c--Ccc------cccCHHHHHHHHHHHHHhCCCCcceeEEEeecC
Q 006969 237 YEILGEVIKVGATTLNI------P--DTV------GITMPTEFGKLIADIKANTPGIENVVISTHCQN 290 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l------~--DTv------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HN 290 (623)
.++++.+.+.|++.++| + .+. -..+++++.++-+.+...++ .--||.-
T Consensus 206 ~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~------~~~~c~~ 267 (442)
T TIGR01290 206 VEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP------QMRHCHQ 267 (442)
T ss_pred HHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh------hhHHHHh
Confidence 99999999999987776 2 222 22356677777776766654 3447753
No 188
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=91.00 E-value=5.2 Score=43.39 Aligned_cols=146 Identities=16% Similarity=0.073 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHhHcC---CCEEEEe--cCCC-ChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHH-HHH
Q 006969 98 LTSKEKLDIARQLAKLG---VDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAW 169 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~G---vd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~ 169 (623)
+......+|...+..+| |+.|=+| -|.. ++.++ +.++.|.+..... . + ..+..-+ ++..++ .-+
T Consensus 32 y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~--~--~--~eitie~--np~~lt~e~l 103 (360)
T TIGR00539 32 YTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVEAFERLFESIYQHASLS--D--D--CEITTEA--NPELITAEWC 103 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCC--C--C--CEEEEEe--CCCCCCHHHH
Confidence 45556666666666566 6777664 5754 34554 3344444432111 1 1 2333323 444443 235
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHcCC
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~aGa 248 (623)
+.++.+|+.+|.+-+-+.+-.....+|+. ...+.+.++++.+++.|+..|.++...+ ...+.+.+.+.++.+.+.|+
T Consensus 104 ~~l~~~Gv~risiGvqS~~~~~l~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~ 181 (360)
T TIGR00539 104 KGLKGAGINRLSLGVQSFRDDKLLFLGRQ--HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPI 181 (360)
T ss_pred HHHHHcCCCEEEEecccCChHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCC
Confidence 66778899999997776655555666653 2245677789999999986455544433 24577888899999999999
Q ss_pred cEEee
Q 006969 249 TTLNI 253 (623)
Q Consensus 249 ~~I~l 253 (623)
+.|.+
T Consensus 182 ~~is~ 186 (360)
T TIGR00539 182 NHLSA 186 (360)
T ss_pred CEEEe
Confidence 98875
No 189
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=90.91 E-value=7.1 Score=43.80 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=79.6
Q ss_pred CCCEEEEe--cCCC-ChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHH-HHHHHHhcCCCCEEEEEecCCH
Q 006969 114 GVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATSG 188 (623)
Q Consensus 114 Gvd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~eal~~a~~~~v~i~~~~Sd 188 (623)
+|+.|-+| -|.. ++++. +.++.+.+..+.. ....+..- +++..++ .-++.++.+|+.+|.+-+-+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~------~~~eitie--~np~~l~~e~l~~lk~~G~~risiGvqS~~ 173 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFN------ADAEISIE--IDPRYITKDVIDALRDEGFNRLSFGVQDFN 173 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCC------CCCeEEEE--eccCcCCHHHHHHHHHcCCCEEEEcCCCCC
Confidence 67777775 3543 34443 4444454432110 01123322 2344442 3456678889999988766655
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHcCCcEEeec
Q 006969 189 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIP 254 (623)
Q Consensus 189 ~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~aGa~~I~l~ 254 (623)
-.....+|+. ...+.+.++++.+++.|++.|.++...+ ...+.+.+.+.++.+.+.|++.|.+-
T Consensus 174 ~~~l~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y 238 (455)
T TIGR00538 174 KEVQQAVNRI--QPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVF 238 (455)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 5555566663 2246677899999999986344433211 24578889999999999999987664
No 190
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.84 E-value=1.9 Score=45.90 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHHHH
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGAC 304 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaAv~ 304 (623)
+..|.+-+.++++.+++.|++.|.++-|+| .++.+|-.++++.+.+...+ ++++-+|+ +++.--++.-+..|-+
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--rvpvi~Gv~~~~t~~ai~~a~~A~~ 101 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG--RVPVFVGATTLNTRDTIARTRALLD 101 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHHHH
Confidence 679999999999999999999999999999 56899999999999988765 57788887 4788999999999999
Q ss_pred hCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 305 AGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 305 aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
+||+.|=..---+-. .+-++++..++
T Consensus 102 ~Gad~vlv~~P~y~~----~~~~~l~~yf~ 127 (309)
T cd00952 102 LGADGTMLGRPMWLP----LDVDTAVQFYR 127 (309)
T ss_pred hCCCEEEECCCcCCC----CCHHHHHHHHH
Confidence 999998776543321 23455555544
No 191
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=90.83 E-value=3.9 Score=43.64 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC---C---------C
Q 006969 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED---A---------G 229 (623)
Q Consensus 162 ~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed---a---------~ 229 (623)
.+++..+++.++.+|+.....|+---+ +.|.+|.++.+.+.++++.+++ ..|.+++-. + +
T Consensus 154 ~~~~~~ai~~~~~~Gi~v~~~~i~G~P-------~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~~~G 225 (313)
T TIGR01210 154 FEDFIRAAELARKYGAGVKAYLLFKPP-------FLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLWNRG 225 (313)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCC-------CCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHHHcC
Confidence 346667888888888875433332111 3466788888888999998887 666654331 1 1
Q ss_pred CCCHH---HHHHHHHHHHHcCCcEEeecCcccccC
Q 006969 230 RSDRK---FLYEILGEVIKVGATTLNIPDTVGITM 261 (623)
Q Consensus 230 r~d~e---~l~~~~~~~~~aGa~~I~l~DTvG~~~ 261 (623)
...|. -+.++++.+...++ ..++||+|...
T Consensus 226 ~~~pp~lws~~e~l~e~~~~~~--~~~~d~~g~~~ 258 (313)
T TIGR01210 226 LYRPPWLWSVAEVLKEAKKIGA--EVLSDPVGAGS 258 (313)
T ss_pred CCCCCCHHHHHHHHHHHHhhCC--eEEecCCCCCC
Confidence 22223 34455555554454 56779888773
No 192
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=90.78 E-value=25 Score=37.26 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+.+.-.+.+.+.|=-..|.... -+ ...++.+++.. -+|+..=|=-+ ..+.|.+|++
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~---------~VPValHLDHg~~~e~i~~ai~ 95 (286)
T PRK12738 25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTY---------NMPLALHLDHHESLDDIRRKVH 95 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999988654443321 11 23444444432 13433332222 3445555555
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC--------CCCCHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFL 236 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda--------~r~d~e~l 236 (623)
+ |...|.+=. | ..+.|||++..++.+++|+..|+. |+- +.||. ..|+|+.+
T Consensus 96 ~----GFtSVM~Dg--S--------~lp~eeNi~~T~evv~~Ah~~gv~-VEaElG~igg~ed~~~~~~~~~~~T~peea 160 (286)
T PRK12738 96 A----GVRSAMIDG--S--------HFPFAENVKLVKSVVDFCHSQDCS-VEAELGRLGGVEDDMSVDAESAFLTDPQEA 160 (286)
T ss_pred c----CCCeEeecC--C--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeeCCccCCcccccchhcCCCHHHH
Confidence 4 888775422 2 246799999999999999999974 532 23332 26789888
Q ss_pred HHHHHHHHHcCCcEEeec--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 237 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
.++++ +-|+|.+-++ -.=|.. .|.-=.++++.+++.++ +||.+|. ..|..--+-..|+..|..-|+
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~----vPLVLHG--gSG~~~e~~~kai~~GI~KiN 230 (286)
T PRK12738 161 KRFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD----VPLVLHG--ASDVPDEFVRRTIELGVTKVN 230 (286)
T ss_pred HHHHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 77765 4488865543 122221 46555678888888773 6788765 456667788889999988774
No 193
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=90.78 E-value=10 Score=38.75 Aligned_cols=211 Identities=15% Similarity=0.129 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhH---HHHHHHHHHHhccccccCCCccceEEeecc----cc-------h
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKED---FEAVRTIAKEVGNAVDAESGYVPVICGLSR----CN-------E 162 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d---~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r----~~-------~ 162 (623)
..+.+++++.+ .++|++.||+.-+...+.+ .+.++.+.+..+..+ ..+..+.. .. .
T Consensus 14 ~~~l~~~l~~~---~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i-------~~~~~~~~~~~~~~~~~~~~~~ 83 (274)
T COG1082 14 ELPLEEILRKA---AELGFDGVELSPGDLFPADYKELAELKELLADYGLEI-------TSLAPFSNNLLSPDEEEREEAL 83 (274)
T ss_pred CCCHHHHHHHH---HHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEE-------EeecccCCCcCCCchhhHHHHH
Confidence 35666665554 5568999999742222332 455555544322211 11111111 11 1
Q ss_pred hhHHHHHHHHhcCCCCEEEEEecCCHHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--cCCC-CCCHHHHHH
Q 006969 163 RDIKTAWEAVKYAKRPRIHTFIATSGIHMEH-KLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--EDAG-RSDRKFLYE 238 (623)
Q Consensus 163 ~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~-~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~--eda~-r~d~e~l~~ 238 (623)
+.++++++.....|.+.|.++.+....+... .-....+...+.+.++.++|++.|+. +.+-+ .... ..+....
T Consensus 84 ~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~-l~~e~~~~~~~~~~~~~~~-- 160 (274)
T COG1082 84 EELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIG-LALENHHHPGNVVETGADA-- 160 (274)
T ss_pred HHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCc-eEEeecCCccceeecCHHH--
Confidence 2223355555566888777665443322211 11122356788888999999998875 54433 1111 2222323
Q ss_pred HHHHHHHcCCcEE-eecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCc
Q 006969 239 ILGEVIKVGATTL-NIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI 317 (623)
Q Consensus 239 ~~~~~~~aGa~~I-~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~Gl 317 (623)
.+.+.+.+-+.+ .+-||.=...=.. +.+..+++..+. ...+|+||..+-... .+..+ .--.-.
T Consensus 161 -~~~~~~~~~~~v~~~lD~~H~~~~~~--d~~~~~~~~~~r----I~hvH~kD~~~~~~~----~~~~~-----~~~~~p 224 (274)
T COG1082 161 -LDLLREVDSPNVGLLLDTGHAFFAGE--DPLEAIRKLGDR----IGHVHLKDADGPTLD----IVNFL-----GQHLPP 224 (274)
T ss_pred -HHHHHhcCCCceEEEEecCchhhccC--CHHHHHHHhhcc----eeEEEEeecCcchhc----ccCCC-----cceeCC
Confidence 333444443333 3346544333222 456666665542 478999999886544 11111 112223
Q ss_pred cCccCcccHHHHHHHHHhccc
Q 006969 318 GERAGNASLEEVVMAFKCRGE 338 (623)
Q Consensus 318 GERaGNa~lEevv~~L~~~~~ 338 (623)
|+ |..+..++...|...+.
T Consensus 225 G~--G~id~~~i~~~L~~~gy 243 (274)
T COG1082 225 GD--GDIDFKAIFSALREAGY 243 (274)
T ss_pred CC--CCcCHHHHHHHHHHcCC
Confidence 44 88999999999998653
No 194
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=90.72 E-value=11 Score=38.81 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=105.8
Q ss_pred HHHHHHHHHhHcCCCEEEEecC----CCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 102 EKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 102 ~Kl~Ia~~L~~~Gvd~IEvGfP----~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
+=+++++.+.+.|++.|=+--- ...+.+++.++.+++.+. .|.+.+=+-...+|++..+++ |+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~---------~pv~~~GGi~s~~d~~~~~~~----Ga 97 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVF---------IPLTVGGGIKSIEDVDKLLRA----GA 97 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcC---------CCEEEECCCCCHHHHHHHHHc----CC
Confidence 5678999999999998866421 133446788888888642 134443333457788776664 77
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC------------------CCCHHHHHHH
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG------------------RSDRKFLYEI 239 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~------------------r~d~e~l~~~ 239 (623)
+.|.+ .++- -+..+.+.+..++ .|-+.+.++. |.. ......+.++
T Consensus 98 ~~viv--gt~~-----------~~~p~~~~~~~~~---~~~~~iv~sl-D~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~ 160 (254)
T TIGR00735 98 DKVSI--NTAA-----------VKNPELIYELADR---FGSQCIVVAI-DAKRVYVNSYCWYEVYIYGGRESTGLDAVEW 160 (254)
T ss_pred CEEEE--ChhH-----------hhChHHHHHHHHH---cCCCCEEEEE-EeccCCCCCCccEEEEEeCCcccCCCCHHHH
Confidence 77643 2211 1112333333333 3422344433 210 1123455688
Q ss_pred HHHHHHcCCcEEee--cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH-HHHHHHHhC-CCEE-Eecc
Q 006969 240 LGEVIKVGATTLNI--PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA-NTIAGACAG-ARQV-EVTI 314 (623)
Q Consensus 240 ~~~~~~aGa~~I~l--~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA-NslaAv~aG-A~~V-d~Tv 314 (623)
++.+.++|++.|.+ -|..|...... .++++.+++..+ +|+-... |.... -...++..| |+.| =++.
T Consensus 161 ~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~----ipvia~G----Gi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 161 AKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVK----IPVIASG----GAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred HHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCC----CCEEEeC----CCCCHHHHHHHHHcCCcceeeEhHH
Confidence 88889999999988 56666544332 357777777653 4455433 22222 223445556 7764 2222
Q ss_pred CCccCccCcccHHHHHHHHHh
Q 006969 315 NGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 315 ~GlGERaGNa~lEevv~~L~~ 335 (623)
.- .|..+++++...|+.
T Consensus 232 ~~----~~~~~~~~~~~~~~~ 248 (254)
T TIGR00735 232 FH----YREITIGEVKEYLAE 248 (254)
T ss_pred Hh----CCCCCHHHHHHHHHH
Confidence 22 244667777776664
No 195
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.69 E-value=14 Score=39.01 Aligned_cols=195 Identities=15% Similarity=0.064 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHhHcC-CCEEEEe-----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLG-VDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~G-vd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (623)
.+..+.-.++++.|.+.| ++-|=++ ++.-+.+|+ +.++..++... +-+|.+++.+....++.-...
T Consensus 17 ~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-------~~~pvi~gv~~~~t~~~i~la 89 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-------DQIALIAQVGSVNLKEAVELG 89 (290)
T ss_pred CcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-------CCCcEEEecCCCCHHHHHHHH
Confidence 478888899999999999 9998664 466666665 45555666542 234778887755555433333
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC--CCCCCHHHHHHHHHHHHHcC
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed--a~r~d~e~l~~~~~~~~~aG 247 (623)
+..+.+|++.|-+..|-. +..+.+++++-..+.++.+. ++..+.|+.-. +...+++.+.+++ +.
T Consensus 90 ~~a~~~Gad~v~v~~P~y-------~~~~~~~i~~yf~~v~~~~~--~lpv~lYn~P~~tg~~l~~~~i~~L~----~~- 155 (290)
T TIGR00683 90 KYATELGYDCLSAVTPFY-------YKFSFPEIKHYYDTIIAETG--GLNMIVYSIPFLTGVNMGIEQFGELY----KN- 155 (290)
T ss_pred HHHHHhCCCEEEEeCCcC-------CCCCHHHHHHHHHHHHhhCC--CCCEEEEeCccccccCcCHHHHHHHh----cC-
Confidence 444667999887755432 34577777776665554322 34434554322 3344556555543 33
Q ss_pred CcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHH
Q 006969 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (623)
Q Consensus 248 a~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lE 327 (623)
...+.+.|+.|- +..+.+++ +..++ +.+-+=+| ...+.++.+|++.. +.| .+|.-.+
T Consensus 156 pnv~giK~s~~d--~~~~~~~~----~~~~~-----~~v~~G~d-----~~~~~~l~~G~~G~---i~~----~~n~~P~ 212 (290)
T TIGR00683 156 PKVLGVKFTAGD--FYLLERLK----KAYPN-----HLIWAGFD-----EMMLPAASLGVDGA---IGS----TFNVNGV 212 (290)
T ss_pred CCEEEEEeCCCC--HHHHHHHH----HhCCC-----CEEEECch-----HHHHHHHHCCCCEE---Eec----HHHhCHH
Confidence 589999999873 45555543 33443 12222222 23456677787765 322 5677666
Q ss_pred HHHHHHHh
Q 006969 328 EVVMAFKC 335 (623)
Q Consensus 328 evv~~L~~ 335 (623)
.++...+.
T Consensus 213 ~~~~i~~~ 220 (290)
T TIGR00683 213 RARQIFEL 220 (290)
T ss_pred HHHHHHHH
Confidence 66555543
No 196
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.66 E-value=7 Score=41.49 Aligned_cols=205 Identities=16% Similarity=0.129 Sum_probs=116.0
Q ss_pred HHHHhHcCCCEEEE-ec---------CCCC----hhHHHHHHHHHHHhccccccCCCccceEE----eecccchhhHHHH
Q 006969 107 ARQLAKLGVDIIEA-GF---------PAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTA 168 (623)
Q Consensus 107 a~~L~~~Gvd~IEv-Gf---------P~~s----~~d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a 168 (623)
|+.+.++|++.|=+ |+ |-.. .+-.+.+++|++... .|.+. |++ +...+.+.
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~---------lPv~aD~dtGyG--~~~~v~r~ 97 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVD---------VPVIMDADAGYG--NAMSVWRA 97 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCC--CcHHHHHH
Confidence 56677889998876 33 3211 112455666665432 13332 233 23336666
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHH
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVI 244 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~ 244 (623)
++.+..+|+..|+|-..+++-++-+.-+ .+.++..++++.+++...+ .+.+...=-|+ .....+..++=+++..
T Consensus 98 V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~--~d~~I~ARTDa~~~~g~deaI~Ra~aY~ 175 (294)
T TIGR02319 98 TREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARED--EDFTIIARTDARESFGLDEAIRRSREYV 175 (294)
T ss_pred HHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccC--CCeEEEEEecccccCCHHHHHHHHHHHH
Confidence 6667778999999988776532211112 3778888887766554443 22222211122 1235677777788889
Q ss_pred HcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcc
Q 006969 245 KVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNA 324 (623)
Q Consensus 245 ~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa 324 (623)
++|||.|.++ |..+++++.++.+.+. .| +.+-+-......+= +.-.--+.|++.|-..... -|+-..
T Consensus 176 eAGAD~ifi~---~~~~~~ei~~~~~~~~--~P----~~~nv~~~~~~p~~--s~~eL~~lG~~~v~~~~~~--~~aa~~ 242 (294)
T TIGR02319 176 AAGADCIFLE---AMLDVEEMKRVRDEID--AP----LLANMVEGGKTPWL--TTKELESIGYNLAIYPLSG--WMAAAS 242 (294)
T ss_pred HhCCCEEEec---CCCCHHHHHHHHHhcC--CC----eeEEEEecCCCCCC--CHHHHHHcCCcEEEEcHHH--HHHHHH
Confidence 9999999996 6788888877777652 22 22233333322221 2334445698888544333 245566
Q ss_pred cHHHHHHHHHhcc
Q 006969 325 SLEEVVMAFKCRG 337 (623)
Q Consensus 325 ~lEevv~~L~~~~ 337 (623)
.+.+.+..|...|
T Consensus 243 a~~~~~~~l~~~G 255 (294)
T TIGR02319 243 VLRKLFTELREAG 255 (294)
T ss_pred HHHHHHHHHHHcC
Confidence 6666666666544
No 197
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=90.65 E-value=6.2 Score=42.22 Aligned_cols=140 Identities=18% Similarity=0.137 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhccccccCCCc-cceEEeecccchhhHHHHHHHHh
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
.++.++..++++.+.+.|++.|-+ |=|-..++=.+.++.+.+.. ++ ...+.. +---++..++.++
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~--------gi~~v~itT----NG~ll~~~~~~L~ 109 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALP--------GIEDIALTT----NGLLLARHAKDLK 109 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcC--------CCCeEEEEe----CchhHHHHHHHHH
Confidence 489999999999999999998877 33655544335566554421 11 112221 1111223456677
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCc
Q 006969 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~ 249 (623)
.+|.++|.+.+-+.+-....++.. ....++.+.+.++.+++.|+..|.++..-....+.+.+.++++.+.+.|++
T Consensus 110 ~~gl~~v~ISld~~~~~~~~~i~~-~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~ 184 (334)
T TIGR02666 110 EAGLKRVNVSLDSLDPERFAKITR-RGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVT 184 (334)
T ss_pred HcCCCeEEEecccCCHHHhheeCC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCe
Confidence 789988888765533222122221 012355666777888888874243332111124456777888877777765
No 198
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=90.60 E-value=4.7 Score=40.24 Aligned_cols=171 Identities=19% Similarity=0.163 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
.+.++-+++++.+... ++.||+|+|-....-.++++.+.+.. . +.-| ..+.-. ........+.+..+|+
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~vk~g~~l~~~~G~~~v~~ir~~~-~-i~~D----~k~~di----~~~~~~~~~~~~~~ga 81 (215)
T PRK13813 13 TDRERALKIAEELDDY-VDAIKVGWPLVLASGLGIIEELKRYA-P-VIAD----LKVADI----PNTNRLICEAVFEAGA 81 (215)
T ss_pred CCHHHHHHHHHhcccc-CCEEEEcHHHHHhhCHHHHHHHHhcC-C-EEEE----eecccc----HHHHHHHHHHHHhCCC
Confidence 3577778888877654 68999998743222235677666531 1 0000 011000 0111122233444688
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE--EEcccC--CCCCCHHHHHHHHHHHHHcCCcEEee
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV--EFSPED--AGRSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V--~f~~ed--a~r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
+.|.+..-... +.+..+++++++.|.. + ...+.. ....-.+++..++....+.|++...+
T Consensus 82 d~vtvh~e~g~---------------~~l~~~i~~~~~~g~~-~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~ 145 (215)
T PRK13813 82 WGIIVHGFTGR---------------DSLKAVVEAAAESGGK-VFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA 145 (215)
T ss_pred CEEEEcCcCCH---------------HHHHHHHHHHHhcCCe-EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 88766443321 2345677888898875 4 233321 11111356777788888899876642
Q ss_pred cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH--HHHHHHHhCCCEE
Q 006969 254 PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA--NTIAGACAGARQV 310 (623)
Q Consensus 254 ~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA--NslaAv~aGA~~V 310 (623)
. ... .+.|+.+++..+. ++.+ =|-|.... |.-.++++||+.+
T Consensus 146 ~----~~~----~~~i~~l~~~~~~--~~~i-----vdgGI~~~g~~~~~~~~aGad~i 189 (215)
T PRK13813 146 P----ATR----PERVRYIRSRLGD--ELKI-----ISPGIGAQGGKAADAIKAGADYV 189 (215)
T ss_pred C----CCc----chhHHHHHHhcCC--CcEE-----EeCCcCCCCCCHHHHHHcCCCEE
Confidence 2 111 2344566665542 1111 22343333 4778999999987
No 199
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=90.44 E-value=22 Score=37.40 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=74.3
Q ss_pred HHHHHHhHcCCCEEEEec----CCC-C--------------------hhHHHHHHHHHHHhccccccCCCccceEEeecc
Q 006969 105 DIARQLAKLGVDIIEAGF----PAA-S--------------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGf----P~~-s--------------------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r 159 (623)
++++.|.+.|+..|++|. |.. + +.-..+++.+....... . .|.+..+.-
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~-----~-~p~i~si~g 100 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEF-----D-TPIIANVAG 100 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhcc-----C-CcEEEEecc
Confidence 567778889999999974 111 0 11123444444322110 0 133444433
Q ss_pred cchhhHHHHHHHHhcCC-CCEEEEEecCCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEE--cccCCCCCCHH
Q 006969 160 CNERDIKTAWEAVKYAK-RPRIHTFIATSGI-HMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEF--SPEDAGRSDRK 234 (623)
Q Consensus 160 ~~~~dI~~a~eal~~a~-~~~v~i~~~~Sd~-h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f--~~eda~r~d~e 234 (623)
...+|...+.+.+..+| .+.|.+-++.-.. |--..+..+. +.+.+.++.+|+. .+. |.+ ++ +.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~----~~~~eiv~~vr~~~~~p-v~vKl~~------~~~ 169 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDP----ELAYEVVKAVKEVVKVP-VIVKLTP------NVT 169 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCH----HHHHHHHHHHHHhcCCC-EEEEcCC------Cch
Confidence 35677777777778888 8988775542110 1001222333 3444555555554 333 333 43 234
Q ss_pred HHHHHHHHHHHcCCcEEeecCcc
Q 006969 235 FLYEILGEVIKVGATTLNIPDTV 257 (623)
Q Consensus 235 ~l~~~~~~~~~aGa~~I~l~DTv 257 (623)
.+.++++.+.++|++.|.+-.|+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccc
Confidence 67788999999999998876543
No 200
>PRK15452 putative protease; Provisional
Probab=90.44 E-value=2.5 Score=47.35 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=88.7
Q ss_pred ceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc-CCCC
Q 006969 152 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGR 230 (623)
Q Consensus 152 ~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e-da~r 230 (623)
|.+.+.+. +.+.++.|++ +|++.|-+-.+...... ..-+.+. +.+.+++++|+++|.+ |.+..- -...
T Consensus 4 peLlapag-~~e~l~aAi~----~GADaVY~G~~~~~~R~-~~~~f~~----edl~eav~~ah~~g~k-vyvt~n~i~~e 72 (443)
T PRK15452 4 PELLSPAG-TLKNMRYAFA----YGADAVYAGQPRYSLRV-RNNEFNH----ENLALGINEAHALGKK-FYVVVNIAPHN 72 (443)
T ss_pred cEEEEECC-CHHHHHHHHH----CCCCEEEECCCccchhh-hccCCCH----HHHHHHHHHHHHcCCE-EEEEecCcCCH
Confidence 34444443 3445555555 48998765333221111 1123444 3477889999999975 544321 1223
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH---HHhCC
Q 006969 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG---ACAGA 307 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA---v~aGA 307 (623)
.+.+.+.+.++.+.++|+|.|.+.| .| ++..+++..|+. + .|-|..+-+-|+.++ .+.|+
T Consensus 73 ~el~~~~~~l~~l~~~gvDgvIV~d-~G---------~l~~~ke~~p~l---~----ih~stqlni~N~~a~~f~~~lG~ 135 (443)
T PRK15452 73 AKLKTFIRDLEPVIAMKPDALIMSD-PG---------LIMMVREHFPEM---P----IHLSVQANAVNWATVKFWQQMGL 135 (443)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcC-HH---------HHHHHHHhCCCC---e----EEEEecccCCCHHHHHHHHHCCC
Confidence 4567788889999999999999988 33 457777777752 2 344566666666543 35699
Q ss_pred CEEEeccCCccCccCcccHHHHHHHH
Q 006969 308 RQVEVTINGIGERAGNASLEEVVMAF 333 (623)
Q Consensus 308 ~~Vd~Tv~GlGERaGNa~lEevv~~L 333 (623)
++|-.+- -.+++|+-...
T Consensus 136 ~rvvLSr--------ELsl~EI~~i~ 153 (443)
T PRK15452 136 TRVILSR--------ELSLEEIEEIR 153 (443)
T ss_pred cEEEECC--------cCCHHHHHHHH
Confidence 8876554 36777766544
No 201
>PRK13753 dihydropteroate synthase; Provisional
Probab=90.42 E-value=19 Score=38.06 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCC
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPA 124 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~ 124 (623)
|..++.+.-++-++.+.+.|.|+|++|..+
T Consensus 19 g~~~~~d~a~~~a~~m~~~GAdIIDIGgeS 48 (279)
T PRK13753 19 SRRLDPAGAVTAAIEMLRVGSDVVDVGPAA 48 (279)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 345789999999999999999999999743
No 202
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=90.41 E-value=5.5 Score=43.00 Aligned_cols=132 Identities=12% Similarity=0.061 Sum_probs=84.7
Q ss_pred HHHHhcCCCCEEEEEecC--------CH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCe--EEEcccCCC-----C
Q 006969 169 WEAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCDD--VEFSPEDAG-----R 230 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~--------Sd--~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~--V~f~~eda~-----r 230 (623)
.+..+.+|.+.|.+-.+- |+ .++..++|=|.+.=.+.+.+.++.+|+. |.+. |.++++|.. -
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~ 237 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS 237 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCC
Confidence 344566899998876553 22 2444556767777777777777777764 4322 445665421 2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecC--cccccCHHHHHHHHHHHHHhCCCCcceeE-EEeecCCcchHHHHHHHHHHhC-
Q 006969 231 SDRKFLYEILGEVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANTPGIENVVI-STHCQNDLGLSTANTIAGACAG- 306 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l~D--TvG~~~P~~v~~li~~l~~~~~~~~~v~i-~~H~HND~GlAvANslaAv~aG- 306 (623)
.+++...++++.+.++|+|.|.+.. +... .+....++.+.+++.++ +|| .....+ ...+..+++.|
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~----ipvi~~G~i~-----~~~a~~~l~~g~ 307 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFK----GPLIAAGGYD-----AESAEAALADGK 307 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcC----CCEEEECCCC-----HHHHHHHHHcCC
Confidence 4678888999999999999998832 2221 13345567778888774 333 333332 56677888876
Q ss_pred CCEE
Q 006969 307 ARQV 310 (623)
Q Consensus 307 A~~V 310 (623)
||.|
T Consensus 308 ~D~V 311 (338)
T cd02933 308 ADLV 311 (338)
T ss_pred CCEE
Confidence 7766
No 203
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=90.40 E-value=5.4 Score=42.51 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec------CCCChhH-HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGF------PAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGf------P~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.+.++-++.++.+.+.|+++|=+.. +...... .+.++.|.+..+. ..|-.+.. ...+.+..++
T Consensus 91 ~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~---------i~Ievl~~-d~~g~~e~l~ 160 (302)
T TIGR00510 91 PDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPN---------IKIETLVP-DFRGNIAALD 160 (302)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCC---------CEEEEeCC-cccCCHHHHH
Confidence 4789999999999999999987753 1111111 2455555443211 12333321 1112344667
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCeEEEcccCCCCCCHHHHHHHHHHHHHcCC
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~--G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa 248 (623)
.++.+|.+.+...+-+++.. ...++.. ...+...+.++++++. |+. +.-+.+-+.--+.+.+.+.++.+.+.|.
T Consensus 161 ~l~~aG~dv~~hnlEt~~~l-~~~vrr~--~t~e~~Le~l~~ak~~~pgi~-~~TgiIVGlGETeee~~etl~~Lrelg~ 236 (302)
T TIGR00510 161 ILLDAPPDVYNHNLETVERL-TPFVRPG--ATYRWSLKLLERAKEYLPNLP-TKSGIMVGLGETNEEIKQTLKDLRDHGV 236 (302)
T ss_pred HHHHcCchhhcccccchHHH-HHHhCCC--CCHHHHHHHHHHHHHhCCCCe-ecceEEEECCCCHHHHHHHHHHHHhcCC
Confidence 77888988887776666543 3334321 2234455677788887 442 2112222223455778899999999999
Q ss_pred cEEeec----------CcccccCHHHHHHHHH
Q 006969 249 TTLNIP----------DTVGITMPTEFGKLIA 270 (623)
Q Consensus 249 ~~I~l~----------DTvG~~~P~~v~~li~ 270 (623)
+.+.|. ....+-+|+++..+=.
T Consensus 237 d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~ 268 (302)
T TIGR00510 237 TMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRS 268 (302)
T ss_pred CEEEeecccCCCCCCCccccCCCHHHHHHHHH
Confidence 998874 3445567776665433
No 204
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.40 E-value=25 Score=36.81 Aligned_cols=195 Identities=15% Similarity=0.179 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.+..+.-.++++.|.+.||+-|=+ | ++.-+++|+ +.++.+.+... +.++.+.+.+-.+.++.-.-.+
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-------~~~~vi~gv~~~~~~~~i~~a~ 90 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-------GRVPVIAGTGSNSTAEAIELTK 90 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-------CCCcEEeecCCchHHHHHHHHH
Confidence 488889999999999999998865 3 355566665 44555555543 2245666766544444333334
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEc-cc-CCCCCCHHHHHHHHHHHHHcCC
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS-PE-DAGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~-~e-da~r~d~e~l~~~~~~~~~aGa 248 (623)
..+.+|++.|-+.-|.. +..+.+++++-..+.++.+ ++..+.|+ |. .+...+++.+.++ .+. .
T Consensus 91 ~a~~~G~d~v~~~pP~~-------~~~~~~~i~~~~~~ia~~~---~~pv~lYn~P~~~g~~l~~~~~~~L----~~~-p 155 (292)
T PRK03170 91 FAEKAGADGALVVTPYY-------NKPTQEGLYQHFKAIAEAT---DLPIILYNVPGRTGVDILPETVARL----AEH-P 155 (292)
T ss_pred HHHHcCCCEEEECCCcC-------CCCCHHHHHHHHHHHHhcC---CCCEEEEECccccCCCCCHHHHHHH----HcC-C
Confidence 45667999887765542 2446677776665555443 44435554 42 2334566655544 333 4
Q ss_pred cEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHH
Q 006969 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (623)
Q Consensus 249 ~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEe 328 (623)
..+.+.||.| .+..+.++++ ..++ +.. -+-+++.. + +..+.+|++.. +.| .+|.-.+.
T Consensus 156 ~v~giK~s~~--d~~~~~~~~~----~~~~--~~~-v~~G~d~~-~-----~~~l~~G~~G~---is~----~~n~~P~~ 213 (292)
T PRK03170 156 NIVGIKEATG--DLERVSELIE----LVPD--DFA-VYSGDDAL-A-----LPFLALGGVGV---ISV----AANVAPKE 213 (292)
T ss_pred CEEEEEECCC--CHHHHHHHHH----hCCC--CeE-EEECChHh-H-----HHHHHcCCCEE---EEh----HHhhhHHH
Confidence 7899999987 3455555433 2332 111 22233322 1 34577898664 333 34665665
Q ss_pred HHHHHHh
Q 006969 329 VVMAFKC 335 (623)
Q Consensus 329 vv~~L~~ 335 (623)
++...+.
T Consensus 214 ~~~l~~~ 220 (292)
T PRK03170 214 MAEMCDA 220 (292)
T ss_pred HHHHHHH
Confidence 5554443
No 205
>PRK05481 lipoyl synthase; Provisional
Probab=90.36 E-value=9.7 Score=40.23 Aligned_cols=165 Identities=19% Similarity=0.195 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEec------CCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGF------PAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 168 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf------P~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 168 (623)
.+++.++.++.++.+.+.|+++|-+-. |......+ +.++.|.+..+ +. .|-.+.. ...+....
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p-------~i--rI~~l~~-~~~~~~e~ 147 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNP-------GT--TIEVLIP-DFRGRMDA 147 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCC-------Cc--EEEEEcc-CCCCCHHH
Confidence 569999999999999999999988742 21111111 34444443221 11 2333332 11111122
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCeEEEcccCCCCCCHHHHHHHHHHHHHc
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~--G~~~V~f~~eda~r~d~e~l~~~~~~~~~a 246 (623)
+..++.+|...+..+.-+++ .+..+++.. ...+...+.++.+++. |+. +.-+..-+.--+.+...+.++.+.+.
T Consensus 148 L~~l~~ag~~i~~~~~ets~-~vlk~m~r~--~t~e~~le~i~~ar~~~pgi~-~~t~~IvGfGET~ed~~~tl~~lrel 223 (289)
T PRK05481 148 LLTVLDARPDVFNHNLETVP-RLYKRVRPG--ADYERSLELLKRAKELHPGIP-TKSGLMVGLGETDEEVLEVMDDLRAA 223 (289)
T ss_pred HHHHHhcCcceeeccccChH-HHHHHhCCC--CCHHHHHHHHHHHHHhCCCCe-EeeeeEEECCCCHHHHHHHHHHHHhc
Confidence 33345568777777666665 344455431 1234455678888888 774 32222212223456777899999999
Q ss_pred CCcEEee-------c---CcccccCHHHHHHHHHHHHH
Q 006969 247 GATTLNI-------P---DTVGITMPTEFGKLIADIKA 274 (623)
Q Consensus 247 Ga~~I~l-------~---DTvG~~~P~~v~~li~~l~~ 274 (623)
|.+.+.+ + +.-..-.|++..++.....+
T Consensus 224 ~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l~~~~~~ 261 (289)
T PRK05481 224 GVDILTIGQYLQPSRKHLPVERYVTPEEFDEYKEIALE 261 (289)
T ss_pred CCCEEEEEccCCCccccCCCCCcCCHHHHHHHHHHHHH
Confidence 9988776 2 23333445555555554443
No 206
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=90.21 E-value=8.2 Score=40.17 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=73.9
Q ss_pred ceEEeeccc-chhhHHHHHHHHhcCCCCEEEEEec-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEcccCC
Q 006969 152 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-TSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDA 228 (623)
Q Consensus 152 ~~i~~~~r~-~~~dI~~a~eal~~a~~~~v~i~~~-~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~-~G~~~V~f~~eda 228 (623)
|.+..-+.. ..+|++.|++.++..|.+.|.+.-- +|... ...++. ++ ...+...|+ .++. |.|++ |=
T Consensus 134 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~-----~~~~~~-~d--l~~i~~lk~~~~~p-V~~ds-~H 203 (260)
T TIGR01361 134 PVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFE-----KATRNT-LD--LSAVPVLKKETHLP-IIVDP-SH 203 (260)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCC-----CCCcCC-cC--HHHHHHHHHhhCCC-EEEcC-CC
Confidence 555544544 7889999999998888877766432 43210 111111 11 122333333 4776 88855 33
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEe----------ecCcccccCHHHHHHHHHHHHH
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLN----------IPDTVGITMPTEFGKLIADIKA 274 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~----------l~DTvG~~~P~~v~~li~~l~~ 274 (623)
+--..+++..++.+++.+||+.|. ++|-.=.++|.++.++++.+++
T Consensus 204 s~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 204 AAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKELRA 259 (260)
T ss_pred CCCccchHHHHHHHHHHcCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHHhh
Confidence 344557888899999999998433 3799999999999999999875
No 207
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=90.21 E-value=10 Score=38.94 Aligned_cols=202 Identities=14% Similarity=0.135 Sum_probs=103.8
Q ss_pred HHHHHHhHcCCCEEEEec--CC------CChhHHHHHHHHHHHhccccccCCCccceEEeecccchh-------hHHHHH
Q 006969 105 DIARQLAKLGVDIIEAGF--PA------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-------DIKTAW 169 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGf--P~------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~-------dI~~a~ 169 (623)
..++.+.++|++.+|+-. |. .++++.+.++.+.+..+-.+. ...|...-++...++ .+.+++
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls---~h~p~~~nl~s~d~~~r~~~~~~l~~~i 90 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVS---VHAPYLINLASPDKEKVEKSIERLIDEI 90 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEE---EECCceecCCCCCHHHHHHHHHHHHHHH
Confidence 456777889999999932 21 223445556555543221110 000110111111111 234455
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCCeEEEcccCC------CCCCHHHHHHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS--LGCDDVEFSPEDA------GRSDRKFLYEILG 241 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~--~G~~~V~f~~eda------~r~d~e~l~~~~~ 241 (623)
+..+..|.+.|.+..... ...++++.++.+.+.++.+-+ .|+ .+..|.. .-.+++.+.++++
T Consensus 91 ~~A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv---~l~lEn~~~~~~~~~~~~~~~~~ll~ 160 (273)
T smart00518 91 KRCEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGV---VILLETTAGKGSQIGSTFEDLKEIID 160 (273)
T ss_pred HHHHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCc---EEEEeccCCCCCccCCCHHHHHHHHH
Confidence 555666888776543321 134556777766666665543 343 3333311 1135677777776
Q ss_pred HHHHcCCcEEeec-Ccccc-------cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 242 EVIKVGATTLNIP-DTVGI-------TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 242 ~~~~aGa~~I~l~-DTvG~-------~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
.+... +.+.++ |+.=. ..|..+.++++.+.+.++. +-...+|.||..|. .|- ..| .
T Consensus 161 ~v~~~--~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~--~~I~~vHl~D~~~~----------~g~-~~d-~ 224 (273)
T smart00518 161 LIKEL--DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGL--EYLKAIHLNDSKIE----------LGS-GKD-R 224 (273)
T ss_pred hcCCC--CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCH--HhhceEEeecCCCc----------cCC-CCc-c
Confidence 55321 223333 43321 2477788888877665531 12468999998752 121 111 1
Q ss_pred cCCccCccCcccHHHHHHHHHhcc
Q 006969 314 INGIGERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 314 v~GlGERaGNa~lEevv~~L~~~~ 337 (623)
=..+|+ |+.+.+.+...|..++
T Consensus 225 H~~~G~--G~id~~~~~~~l~~~~ 246 (273)
T smart00518 225 HENLGE--GYIGFEPFRLLMADKR 246 (273)
T ss_pred ccCCCC--CCCChHHHHHHhhChh
Confidence 123344 8899999888877653
No 208
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.20 E-value=12 Score=39.02 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=74.0
Q ss_pred ceEEeeccc-chhhHHHHHHHHhcCCCCEEEEEec----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcc
Q 006969 152 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA----TSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSP 225 (623)
Q Consensus 152 ~~i~~~~r~-~~~dI~~a~eal~~a~~~~v~i~~~----~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~ 225 (623)
|++.--+.. ..+++..|.+.+...|.+.+++.-- .+.. ++ +.++ ...+...|+. ++. |.|++
T Consensus 136 PV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y--------~~-~~vd--l~~i~~lk~~~~~p-V~~D~ 203 (266)
T PRK13398 136 PILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETY--------TR-NTLD--LAAVAVIKELSHLP-IIVDP 203 (266)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCC--------CH-HHHH--HHHHHHHHhccCCC-EEEeC
Confidence 444433333 6788888888888888887777542 2111 11 1222 2344455544 675 77755
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEE----------eecCcccccCHHHHHHHHHHHHHh
Q 006969 226 EDAGRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 226 eda~r~d~e~l~~~~~~~~~aGa~~I----------~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
+=+-...+++..++.+++.+||+.+ .++|-.=.++|.++.++++.+++.
T Consensus 204 -sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 204 -SHATGRRELVIPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred -CCcccchhhHHHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHHHHH
Confidence 3333455789999999999999833 257889999999999999999864
No 209
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=2.6 Score=45.77 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=64.7
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCC-eEEEcccCCCCCCHHHHHH
Q 006969 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHK-LRKTKQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 161 ~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~-l~~t~ee~l~~~~~~v~~ak~~G~~-~V~f~~eda~r~d~e~l~~ 238 (623)
+.+++..+++. |++.|- +...+...+.. .+.|.++ +.+.|++|+++|.+ .|..+. -......+.+.+
T Consensus 15 ~l~~l~~ai~~----GADaVY--~G~~~~~~R~~a~nfs~~~----l~e~i~~ah~~gkk~~V~~N~-~~~~~~~~~~~~ 83 (347)
T COG0826 15 NLEDLKAAIAA----GADAVY--IGEKEFGLRRRALNFSVED----LAEAVELAHSAGKKVYVAVNT-LLHNDELETLER 83 (347)
T ss_pred CHHHHHHHHHc----CCCEEE--eCCcccccccccccCCHHH----HHHHHHHHHHcCCeEEEEecc-ccccchhhHHHH
Confidence 34455555443 667654 44333322222 4677665 67899999999985 233333 233344566789
Q ss_pred HHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCC
Q 006969 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGI 279 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~ 279 (623)
.++.+.+.|+|.|.+.|- -+|..+++..|+.
T Consensus 84 ~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l 114 (347)
T COG0826 84 YLDRLVELGVDAVIVADP----------GLIMLARERGPDL 114 (347)
T ss_pred HHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCCC
Confidence 999999999999999984 3788889988864
No 210
>PRK09234 fbiC FO synthase; Reviewed
Probab=90.15 E-value=15 Score=44.47 Aligned_cols=223 Identities=19% Similarity=0.090 Sum_probs=126.7
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEEec---CCCC-------------hhHHHHHHHHHHHhccccccCCCccceEEee
Q 006969 94 PGATLTSKEKLDIARQLAKLGVDIIEAGF---PAAS-------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157 (623)
Q Consensus 94 ~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---P~~s-------------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 157 (623)
....|+.|+.+++++...+.|+..+=+-+ |... ..+++.+..+.+.+... .++.|.+..
T Consensus 98 ~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~----~gl~p~i~~- 172 (843)
T PRK09234 98 EAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEE----TGLLPHLNP- 172 (843)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHh----cCCCceeee-
Confidence 35678999999999999999999865532 4211 11356666555544321 133343322
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecC-CHHHH-H----HHh--CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC
Q 006969 158 SRCNERDIKTAWEAVKYAKRPRIHTFIAT-SGIHM-E----HKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG 229 (623)
Q Consensus 158 ~r~~~~dI~~a~eal~~a~~~~v~i~~~~-Sd~h~-~----~~l--~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~ 229 (623)
+-...++++ .|+.+++. .++..-+ ++.+- + +.. +|+.++ + .+.++.|++.|+. ++-+...+-
T Consensus 173 G~ls~~E~~----~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~---R-L~ti~~A~~lGi~-~tsG~L~Gi 242 (843)
T PRK09234 173 GVMSWSELA----RLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAV---R-LRVLEDAGRLSVP-FTTGILIGI 242 (843)
T ss_pred CCCCHHHHH----HHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHH---H-HHHHHHHHHcCCC-ccceEEEEC
Confidence 222344443 34444554 2333332 33221 1 111 233433 2 5789999999986 332222222
Q ss_pred CCCHHHHHHHHHHHHHc-----CCcEEe------ecCcc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch
Q 006969 230 RSDRKFLYEILGEVIKV-----GATTLN------IPDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL 294 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~a-----Ga~~I~------l~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl 294 (623)
--+++..++.+..+.+. |...|. .++|- ...+|.++-++|...|--+|+..++... -|-.|.
T Consensus 243 GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~~~Iqa~---~~l~g~ 319 (843)
T PRK09234 243 GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPKMRIQAP---PNLVSG 319 (843)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceeeCc---cccCCH
Confidence 33445555655555554 444332 23552 3578999999999998888653333332 355665
Q ss_pred HHHHHHHHHHhCCCEEEec--cCC--c-cCccCcccHHHHHHHHHhcc
Q 006969 295 STANTIAGACAGARQVEVT--ING--I-GERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 295 AvANslaAv~aGA~~Vd~T--v~G--l-GERaGNa~lEevv~~L~~~~ 337 (623)
. -+..++.+||+-+.+| +.+ + -|+. ..+++++...++..|
T Consensus 320 ~--~~~~~L~~GanD~GG~~~~~~d~~~p~~~-~~~~~~l~~~~~~aG 364 (843)
T PRK09234 320 D--ECAALLGAGIDDWGGVSPLTPDHVNPERP-WPQLDELAAVTAEAG 364 (843)
T ss_pred H--HHHHHHhcCCCcccchhhhHhhccCccCC-CCCHHHHHHHHHHcC
Confidence 4 3557899999999998 443 1 1343 357899988887654
No 211
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=90.08 E-value=9.6 Score=40.05 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHh
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
..|+.++..++++.+.+.|++.|-+ |=|-..++=.+.++.+.+. ++ ..+...+ +---++..++.++
T Consensus 38 ~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~---------g~-~~v~i~T--NG~ll~~~~~~l~ 105 (302)
T TIGR02668 38 NELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDY---------GI-KDVSMTT--NGILLEKLAKKLK 105 (302)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhC---------CC-ceEEEEc--CchHHHHHHHHHH
Confidence 3588999999999999999998766 3465544323455554432 11 1222222 1111223344566
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCC-CCHHHHHHHHHHHHHcCCc
Q 006969 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR-SDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r-~d~e~l~~~~~~~~~aGa~ 249 (623)
.+|.++|.+.+-+.+-.....+.. ...++.+.+.++.+++.|+..|.++.. ..+ .+.+.+.++++.+.+.|++
T Consensus 106 ~~g~~~v~iSld~~~~~~~~~i~~--~~~~~~vl~~i~~~~~~G~~~v~i~~v-~~~g~n~~ei~~~~~~~~~~g~~ 179 (302)
T TIGR02668 106 EAGLDRVNVSLDTLDPEKYKKITG--RGALDRVIEGIESAVDAGLTPVKLNMV-VLKGINDNEIPDMVEFAAEGGAI 179 (302)
T ss_pred HCCCCEEEEEecCCCHHHhhhccC--CCcHHHHHHHHHHHHHcCCCcEEEEEE-EeCCCCHHHHHHHHHHHHhcCCE
Confidence 678888888665543222222222 234666677777778887642333221 112 3455666777777666654
No 212
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.96 E-value=7.3 Score=41.01 Aligned_cols=207 Identities=17% Similarity=0.151 Sum_probs=122.5
Q ss_pred HHHHhHcCCCEEEEec---------CCCC----hhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHh
Q 006969 107 ARQLAKLGVDIIEAGF---------PAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 107 a~~L~~~Gvd~IEvGf---------P~~s----~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
++.+.++|++-+=.+. |-.. .+-.+.+++|.+.+.-.+ ++-.=.||+. ...+.+.+..+.
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv-----~vD~dtGfG~--~~nvartV~~~~ 103 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPV-----LVDIDTGFGE--ALNVARTVRELE 103 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCce-----EEeccCCCCc--HHHHHHHHHHHH
Confidence 6677888998887642 2111 122466777776532111 1111123443 445556666666
Q ss_pred cCCCCEEEEEecCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc-cCCC-CCCHHHHHHHHHHHHHcCC
Q 006969 174 YAKRPRIHTFIATSGI---HMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG-RSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~---h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~-eda~-r~d~e~l~~~~~~~~~aGa 248 (623)
.+|+..|||-..+.+- |+..+-=.+.+|..++++.+++..++.. +.+.+ .|+. .--.+...+=+++-.++||
T Consensus 104 ~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~---fvi~ARTda~~~~~ld~AI~Ra~AY~eAGA 180 (289)
T COG2513 104 QAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPD---FVIIARTDALLVEGLDDAIERAQAYVEAGA 180 (289)
T ss_pred HcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCC---eEEEeehHHHHhccHHHHHHHHHHHHHcCC
Confidence 6799889987766652 2222222467888888887777766532 22222 0111 0114667777778889999
Q ss_pred cEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCcc-CccCcccHH
Q 006969 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG-ERAGNASLE 327 (623)
Q Consensus 249 ~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlG-ERaGNa~lE 327 (623)
|.|.. -|...++++.++.+.++ +| +++-+--+--..+-..-.|+ ++|+++| ++|.. =|+.|..++
T Consensus 181 D~if~---~al~~~e~i~~f~~av~--~p----l~~N~t~~g~tp~~~~~~L~--~~Gv~~V---~~~~~~~raa~~a~~ 246 (289)
T COG2513 181 DAIFP---EALTDLEEIRAFAEAVP--VP----LPANITEFGKTPLLTVAELA--ELGVKRV---SYGLTAFRAALKAAE 246 (289)
T ss_pred cEEcc---ccCCCHHHHHHHHHhcC--CC----eeeEeeccCCCCCcCHHHHH--hcCceEE---EECcHHHHHHHHHHH
Confidence 99995 46677888888888776 44 23333233222343343333 5688888 33433 489999999
Q ss_pred HHHHHHHhcc
Q 006969 328 EVVMAFKCRG 337 (623)
Q Consensus 328 evv~~L~~~~ 337 (623)
.++..+...|
T Consensus 247 ~~~~~i~~~g 256 (289)
T COG2513 247 QAAREIRREG 256 (289)
T ss_pred HHHHHHHhcC
Confidence 9998888754
No 213
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=89.93 E-value=8.5 Score=43.19 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=83.9
Q ss_pred cCCCEEEEe--cCCC-ChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHH-HHHHHHhcCCCCEEEEEecCC
Q 006969 113 LGVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATS 187 (623)
Q Consensus 113 ~Gvd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~eal~~a~~~~v~i~~~~S 187 (623)
.+|+.|-+| -|.. ++++. +.++.|.+..+.. . ...+..- +++..+. ..++.++.+|+.+|.+-+-+.
T Consensus 102 ~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~--~----~~e~tie--~~p~~lt~e~l~~L~~~G~~rvsiGvQS~ 173 (453)
T PRK13347 102 RRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFA--P----EAEIAVE--IDPRTVTAEMLQALAALGFNRASFGVQDF 173 (453)
T ss_pred CeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCC--C----CceEEEE--eccccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 356666664 4653 34554 4445555432111 0 0133332 3444442 345677888999999877776
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHcCCcEEeecCc
Q 006969 188 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIPDT 256 (623)
Q Consensus 188 d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~aGa~~I~l~DT 256 (623)
+-.+...+|+. ...+.+.++++.+++.|++.|.++...+ ...+++.+.+.++.+.+.|++.|.+-.-
T Consensus 174 ~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l 241 (453)
T PRK13347 174 DPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGY 241 (453)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 66676777764 2345677889999999986454433322 2457888999999999999998887654
No 214
>PRK10481 hypothetical protein; Provisional
Probab=89.89 E-value=3.3 Score=42.21 Aligned_cols=131 Identities=19% Similarity=0.224 Sum_probs=79.9
Q ss_pred EEeCCCcccCCCCCCCCCHHHHH----HHHHHHhHcCCCEEEEe----cCCCChhHHHHHHHHHHHhccccccCCCccce
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKL----DIARQLAKLGVDIIEAG----FPAASKEDFEAVRTIAKEVGNAVDAESGYVPV 153 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl----~Ia~~L~~~Gvd~IEvG----fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~ 153 (623)
.+=|=||||.|.- |+.+... .....|++-|++.|=+. ||.- ...+.+. +.|
T Consensus 57 ~lvtrL~dG~~v~---~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l-----~a~r~~l------------~~P- 115 (224)
T PRK10481 57 VLVTRLNDGQQVH---VSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSL-----TARNAIL------------LEP- 115 (224)
T ss_pred eeEEEecCCCEEE---EEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCc-----cccCccc------------cCc-
Confidence 4446699999864 5544333 44567888999998774 3431 1111110 001
Q ss_pred EEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCH
Q 006969 154 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 233 (623)
Q Consensus 154 i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~ 233 (623)
...|...+.++. +..+|.++.|.-+ .+.+..++-...|++ +.|....-+..++
T Consensus 116 --------~~~i~~lv~Al~--~g~riGVitP~~~----------------qi~~~~~kw~~~G~~-v~~~~aspy~~~~ 168 (224)
T PRK10481 116 --------SRILPPLVAAIV--GGHQVGVIVPVEE----------------QLAQQAQKWQVLQKP-PVFALASPYHGSE 168 (224)
T ss_pred --------hhhHHHHHHHhc--CCCeEEEEEeCHH----------------HHHHHHHHHHhcCCc-eeEeecCCCCCCH
Confidence 123333345554 3468888887633 222344555566886 6665443334777
Q ss_pred HHHHHHHHHHHHcCCcEEeecCcccccC
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGITM 261 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~~ 261 (623)
+.+.+.++.+.+.|||.|.+ |-.|+.+
T Consensus 169 ~~l~~aa~~L~~~gaD~Ivl-~C~G~~~ 195 (224)
T PRK10481 169 EELIDAGKELLDQGADVIVL-DCLGYHQ 195 (224)
T ss_pred HHHHHHHHHhhcCCCCEEEE-eCCCcCH
Confidence 88999999999999999887 7888877
No 215
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=89.80 E-value=9.2 Score=41.78 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=75.0
Q ss_pred ceEEeecc-cchhhHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEcccCC
Q 006969 152 PVICGLSR-CNERDIKTAWEAVKYAKRPRIHTFI-ATSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDA 228 (623)
Q Consensus 152 ~~i~~~~r-~~~~dI~~a~eal~~a~~~~v~i~~-~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~-~G~~~V~f~~eda 228 (623)
|++..-+. +..+|+..|++.+...|.+.|.+.= .+|.. .....+.+ .+ .++...|+ .++. |.|++ |=
T Consensus 227 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~y------p~~~~~~l-dl-~~i~~lk~~~~~P-V~~d~-~H 296 (360)
T PRK12595 227 PVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTY------EKATRNTL-DI-SAVPILKQETHLP-VMVDV-TH 296 (360)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCC------CCCCCCCc-CH-HHHHHHHHHhCCC-EEEeC-CC
Confidence 55555554 5789999999998888887665553 33321 00000001 11 23334443 5776 88866 33
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEE----------eecCcccccCHHHHHHHHHHHHHhC
Q 006969 229 GRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I----------~l~DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+--+.+++..++.+++.+||+.+ ..+|-.=.++|.++.++++.+++-.
T Consensus 297 s~G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i~~~~ 354 (360)
T PRK12595 297 STGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDELKPLA 354 (360)
T ss_pred CCcchhhHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHHHHHHH
Confidence 33356788889999999999733 3578888899999999999998743
No 216
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=89.79 E-value=7.4 Score=39.61 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=83.3
Q ss_pred HHHHHHHHhHcCCCEEEEecCCCCh------------hH-HHHHHHHHHHhccccccCCCccc-eEEeecccchhhHHHH
Q 006969 103 KLDIARQLAKLGVDIIEAGFPAASK------------ED-FEAVRTIAKEVGNAVDAESGYVP-VICGLSRCNERDIKTA 168 (623)
Q Consensus 103 Kl~Ia~~L~~~Gvd~IEvGfP~~s~------------~d-~e~v~~i~~~~~~~~~~~~~l~~-~i~~~~r~~~~dI~~a 168 (623)
|-.+++.|.+.+||..-.-|-+.+. +| ...++.|.+. +.. .+| .+.|+.-.....=..|
T Consensus 99 dE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~-~ir------vvpHitiGL~~gki~~e~ka 171 (275)
T COG1856 99 DESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKEN-GIR------VVPHITIGLDFGKIHGEFKA 171 (275)
T ss_pred cHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHc-Cce------eceeEEEEeccCcccchHHH
Confidence 3567888888899988887644321 12 1233333332 111 122 3445544333333456
Q ss_pred HHHHhcCCCC--EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc
Q 006969 169 WEAVKYAKRP--RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 169 ~eal~~a~~~--~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a 246 (623)
++.|..-..+ .+.+++|+--. +++.++.--.+.+..+++|||+.--..|..+++ |---++-+++=+.++.+
T Consensus 172 IdiL~~~~~DalVl~vliPtpGt----km~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCm---rP~Ge~rvk~d~~av~~ 244 (275)
T COG1856 172 IDILVNYEPDALVLVVLIPTPGT----KMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCM---RPRGEWRVKLDKEAVLA 244 (275)
T ss_pred HHHHhcCCCCeEEEEEEecCCch----hccCCCCcCHHHHHHHHHHHHHhCCCCeeEeec---CcCchhHHHHHHHHHHc
Confidence 6766654555 46667888764 445554444566677999999983223667665 33346677888889999
Q ss_pred CCcEEeec
Q 006969 247 GATTLNIP 254 (623)
Q Consensus 247 Ga~~I~l~ 254 (623)
|+|+|..|
T Consensus 245 gVd~It~P 252 (275)
T COG1856 245 GVDRITFP 252 (275)
T ss_pred CCceeecC
Confidence 99999876
No 217
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=89.76 E-value=2.9 Score=44.02 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=79.5
Q ss_pred EcccC-CCCCCHHHHHHHHHHHHHcCCcEEeecCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH
Q 006969 223 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298 (623)
Q Consensus 223 f~~ed-a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 298 (623)
+.|-+ .++.|.+-+.++++.+++.|++.|.++-|+|= ++.+|-.++++.+.+...+ +++|-+|.-.+..-++.-
T Consensus 9 vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~--~~pvi~gv~~~t~~~i~~ 86 (289)
T cd00951 9 VTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG--RVPVLAGAGYGTATAIAY 86 (289)
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCCEEEecCCCHHHHHHH
Confidence 35543 35899999999999999999999999999884 5788888999988887754 355555554467778888
Q ss_pred HHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 299 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 299 slaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
+..|-++||+.+=..---+ -. .+-++++..++.
T Consensus 87 a~~a~~~Gad~v~~~pP~y-~~---~~~~~i~~~f~~ 119 (289)
T cd00951 87 AQAAEKAGADGILLLPPYL-TE---APQEGLYAHVEA 119 (289)
T ss_pred HHHHHHhCCCEEEECCCCC-CC---CCHHHHHHHHHH
Confidence 8899999999986543322 22 345666655543
No 218
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=89.73 E-value=11 Score=42.28 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=82.3
Q ss_pred cCCCEEEEe--cCCC-ChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHH-HHHHHHhcCCCCEEEEEecCC
Q 006969 113 LGVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATS 187 (623)
Q Consensus 113 ~Gvd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~eal~~a~~~~v~i~~~~S 187 (623)
.+|+.|-+| -|.. .+.+. +.++.+.+..+. .. + ..+..- +++..+. ..++.++.+|+.+|.+-+-+.
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~--~~--~--~e~tie--~np~~lt~e~l~~l~~aG~~risiGvqS~ 172 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNF--AP--D--AEISIE--IDPRELDLEMLDALRELGFNRLSLGVQDF 172 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCC--CC--C--CEEEEE--ecCCcCCHHHHHHHHHcCCCEEEECCCCC
Confidence 457777664 4654 34444 344445443211 11 0 123322 3444442 345677788999999876666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHcCCcEEeecCc
Q 006969 188 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIPDT 256 (623)
Q Consensus 188 d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~aGa~~I~l~DT 256 (623)
+-...+.+++. ...+.+.++++.+++.|++.|.++...+ ...+.+.+.+.++.+.+.|++.|.+-.-
T Consensus 173 ~~~~L~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l 240 (453)
T PRK09249 173 DPEVQKAVNRI--QPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNY 240 (453)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccC
Confidence 55555666664 2345677889999999985455544322 3467788889999999999998887653
No 219
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.67 E-value=1.2 Score=50.23 Aligned_cols=74 Identities=20% Similarity=0.133 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
+...+.++.+.++|++.|.| |+.- ..|..+.++|+++++.+|+ +++-. +.++--..+..++++||+.|.+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~---~~vi~----g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLG---VPIVA----GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCC---CeEEE----eccCCHHHHHHHHHhCCCEEEEC
Confidence 35568888999999999888 7766 7779999999999999985 45554 56666778889999999999876
Q ss_pred cCC
Q 006969 314 ING 316 (623)
Q Consensus 314 v~G 316 (623)
+.|
T Consensus 295 ~g~ 297 (475)
T TIGR01303 295 VGP 297 (475)
T ss_pred CcC
Confidence 554
No 220
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=89.66 E-value=14 Score=38.41 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.+..+.-.++++.|.+.|++-|=+. ++.-+.+|+ +.++..++... +.++.+.+.+..+.++.-+-.+
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-------~~~~vi~gv~~~~~~~~~~~a~ 89 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-------GRVPVIAGTGSNNTAEAIELTK 89 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-------CCCcEEeccCCccHHHHHHHHH
Confidence 4888999999999999999988763 244455554 44455555532 2246677766544444333334
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC--CCCCCHHHHHHHHHHHHHcCC
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed--a~r~d~e~l~~~~~~~~~aGa 248 (623)
..+++|++.|-+.-|.. +..+.+++++-..+.++. .++..+.|+.-. +...+++.+.+++ +. .
T Consensus 90 ~a~~~G~d~v~~~~P~~-------~~~~~~~l~~~~~~ia~~---~~~pi~lYn~P~~~g~~ls~~~~~~L~----~~-p 154 (284)
T cd00950 90 RAEKAGADAALVVTPYY-------NKPSQEGLYAHFKAIAEA---TDLPVILYNVPGRTGVNIEPETVLRLA----EH-P 154 (284)
T ss_pred HHHHcCCCEEEEccccc-------CCCCHHHHHHHHHHHHhc---CCCCEEEEEChhHhCCCCCHHHHHHHh----cC-C
Confidence 44667999887665532 345777777666655553 355545554322 3345666665554 33 5
Q ss_pred cEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHH
Q 006969 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (623)
Q Consensus 249 ~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEe 328 (623)
..+.+.|+.| .+..+.++++. +++ .+.+-+=+| + ..+.++..|++.. +.| .+|.-.+.
T Consensus 155 ~v~giK~s~~--~~~~~~~~~~~----~~~----~~~v~~G~d-~----~~~~~~~~G~~G~---~s~----~~n~~p~~ 212 (284)
T cd00950 155 NIVGIKEATG--DLDRVSELIAL----CPD----DFAVLSGDD-A----LTLPFLALGGVGV---ISV----AANVAPKL 212 (284)
T ss_pred CEEEEEECCC--CHHHHHHHHHh----CCC----CeEEEeCCh-H----hHHHHHHCCCCEE---Eeh----HHHhhHHH
Confidence 7899999987 34445544333 332 133332223 1 2334577888733 333 34555555
Q ss_pred HHHHHH
Q 006969 329 VVMAFK 334 (623)
Q Consensus 329 vv~~L~ 334 (623)
+....+
T Consensus 213 ~~~~~~ 218 (284)
T cd00950 213 MAEMVR 218 (284)
T ss_pred HHHHHH
Confidence 544444
No 221
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=89.57 E-value=35 Score=37.14 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+++.-.+.+...|=-.+|.... .+ ...++.+++... -+|...=|=-+ ..+.+.+|++
T Consensus 25 ~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~--------~VPVaLHLDHg~~~e~i~~Ai~ 96 (347)
T PRK13399 25 VNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP--------DIPICLHQDHGNSPATCQSAIR 96 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC--------CCcEEEECCCCCCHHHHHHHHh
Confidence 4688999999999999999987655554321 11 133444444310 12433333222 3445566655
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccc-------C----------
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPE-------D---------- 227 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~e-------d---------- 227 (623)
+ |...|.+=.|.-+ .-+...+.+||++..++.|++|+..|+. |+- +.| |
T Consensus 97 ~----GFtSVMiDgS~l~---~~~~~~~~eeNI~~Trevve~Ah~~Gvs-VEaELG~igg~e~~~~g~ed~~~~~~~~~~ 168 (347)
T PRK13399 97 S----GFTSVMMDGSLLA---DGKTPASYDYNVDVTRRVTEMAHAVGVS-VEGELGCLGSLETGEAGEEDGVGAEGKLSH 168 (347)
T ss_pred c----CCCEEEEeCCCCC---CCCCccCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeccCcccccccccCCccccccccc
Confidence 4 8887754332211 0112345899999999999999999985 532 111 2
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCcEEeec--Cccccc----CHH---HHHHHHHHHHHhCCCCcceeEEEeecCCcc----
Q 006969 228 -AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT----MPT---EFGKLIADIKANTPGIENVVISTHCQNDLG---- 293 (623)
Q Consensus 228 -a~r~d~e~l~~~~~~~~~aGa~~I~l~--DTvG~~----~P~---~v~~li~~l~~~~~~~~~v~i~~H~HND~G---- 293 (623)
...|+|+...+++++ -|+|.+-++ -.=|.. .|. -=.++++.+++.+++ +||.+|.=-..+
T Consensus 169 ~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~---vPLVLHGgSGvp~~~~ 242 (347)
T PRK13399 169 DQMLTDPDQAVDFVQR---TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPN---THLVMHGSSSVPQELQ 242 (347)
T ss_pred cccCCCHHHHHHHHHH---HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCC---CCEEEeCCCCCCHHHH
Confidence 236788888777764 587765443 223332 242 224577888888853 789988755433
Q ss_pred ---------------hHHHHHHHHHHhCCCEE
Q 006969 294 ---------------LSTANTIAGACAGARQV 310 (623)
Q Consensus 294 ---------------lAvANslaAv~aGA~~V 310 (623)
....+-..|+..|+.-|
T Consensus 243 ~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KI 274 (347)
T PRK13399 243 EIINAYGGKMKETYGVPVEEIQRGIKHGVRKV 274 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCeEE
Confidence 33555566666666665
No 222
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=89.52 E-value=7.5 Score=42.09 Aligned_cols=130 Identities=13% Similarity=0.085 Sum_probs=81.9
Q ss_pred cCCCEEEEe--cCCC-ChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHH-HHHHHHhcCCCCEEEEEecCC
Q 006969 113 LGVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATS 187 (623)
Q Consensus 113 ~Gvd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~eal~~a~~~~v~i~~~~S 187 (623)
.+++.|-+| -|.. +++.. +.+..|.+.+.. + ..+..-+ ++..+. .-++.++.+|+.+|.+-+-+.
T Consensus 50 ~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~----~----~eitiE~--nP~~~~~e~l~~l~~~GvnRiSiGvQS~ 119 (350)
T PRK08446 50 EKIESVFIGGGTPSTVSAKFYEPIFEIISPYLSK----D----CEITTEA--NPNSATKAWLKGMKNLGVNRISFGVQSF 119 (350)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhcCC----C----ceEEEEe--CCCCCCHHHHHHHHHcCCCEEEEecccC
Confidence 368888775 5753 44443 333344332111 1 2343333 444442 235667888999999977666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC-CCCHHHHHHHHHHHHHcCCcEEeec
Q 006969 188 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVGATTLNIP 254 (623)
Q Consensus 188 d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~-r~d~e~l~~~~~~~~~aGa~~I~l~ 254 (623)
+-...+.+|+.. ..+.+.++++.+++.|+..|.++...+. .-+.+.+.+.++.+.+.|++.|.+-
T Consensus 120 ~~~~L~~lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y 185 (350)
T PRK08446 120 NEDKLKFLGRIH--SQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAY 185 (350)
T ss_pred CHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEec
Confidence 556667777632 2456777899999999865555444332 3567888899999999999988753
No 223
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=89.49 E-value=9.8 Score=38.25 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhHcCCCEEEEecC----CCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcC
Q 006969 100 SKEKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (623)
Q Consensus 100 ~e~Kl~Ia~~L~~~Gvd~IEvGfP----~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 175 (623)
..+=+++++.|.+.|+|.+-+--- ...+..++.++++.+... .|.+.+=+-...++++..++ .
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~---------~pv~~~GgI~~~e~~~~~~~----~ 94 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG---------IPVQVGGGIRSLEDIERLLD----L 94 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcC---------CCEEEeCCcCCHHHHHHHHH----c
Confidence 346788999999999999988421 113345788888877542 13332222224566666555 4
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--c------CCCC-CCHHHHHHHHHHHHHc
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--E------DAGR-SDRKFLYEILGEVIKV 246 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~--e------da~r-~d~e~l~~~~~~~~~a 246 (623)
|++.|.+ .+..+ +..+.+.+.+ +..|...+.++. - +... .....+.++++.+.+.
T Consensus 95 Gad~vvi--gs~~l-----------~dp~~~~~i~---~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T cd04732 95 GVSRVII--GTAAV-----------KNPELVKELL---KEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL 158 (234)
T ss_pred CCCEEEE--CchHH-----------hChHHHHHHH---HHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc
Confidence 7887643 32211 1122223333 334432233321 0 0111 1122345778888899
Q ss_pred CCcEEeecCc--ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH-HHHHHHhCCCEE
Q 006969 247 GATTLNIPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN-TIAGACAGARQV 310 (623)
Q Consensus 247 Ga~~I~l~DT--vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN-slaAv~aGA~~V 310 (623)
|++.|.+-|. .|.... .-.++++.+++.++ +|+-.-+ |....+ ...+...||+.|
T Consensus 159 ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~----ipvi~~G----Gi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 159 GVKAIIYTDISRDGTLSG-PNFELYKELAAATG----IPVIASG----GVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCCEEEEEeecCCCccCC-CCHHHHHHHHHhcC----CCEEEec----CCCCHHHHHHHHHCCCCEE
Confidence 9999888764 555444 23567777777653 3444322 222222 334555687765
No 224
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.41 E-value=13 Score=37.72 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhHcCCCEEEE---ec-CCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 101 KEKLDIARQLAKLGVDIIEA---GF-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEv---Gf-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+-+++++.|.+.|++.|=+ .. ....+.+++.++++++.+. .|.+.+=+-...+|++..++. |
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~---------~pv~~~GGI~s~~d~~~~l~~----G 93 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF---------IPLTVGGGIRSLEDARRLLRA----G 93 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC---------CCEEEeCCCCCHHHHHHHHHc----C
Confidence 36688999999999994443 21 1123446788888887642 244444333456777766553 6
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--c-----------CCC-CCCHHHHHHHHHH
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--E-----------DAG-RSDRKFLYEILGE 242 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~--e-----------da~-r~d~e~l~~~~~~ 242 (623)
++.|.+ .+ ..+ .+ .+.+.+.++.. +.+.+.++. - +.+ ........++++.
T Consensus 94 ~~~v~i--g~-~~~------~~----p~~~~~i~~~~---~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 157 (243)
T cd04731 94 ADKVSI--NS-AAV------EN----PELIREIAKRF---GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKE 157 (243)
T ss_pred CceEEE--Cc-hhh------hC----hHHHHHHHHHc---CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHH
Confidence 766643 21 111 11 22333333332 221122222 0 011 1123445677888
Q ss_pred HHHcCCcEEee--cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh-CCCEEEeccCCccC
Q 006969 243 VIKVGATTLNI--PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA-GARQVEVTINGIGE 319 (623)
Q Consensus 243 ~~~aGa~~I~l--~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a-GA~~Vd~Tv~GlGE 319 (623)
+.+.|++.|.+ -+..|..... -.++++.+++..+ +|+-.-.--. .......+++. ||+.| +.|-.=
T Consensus 158 l~~~G~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~~~----~pvia~GGi~---~~~di~~~l~~~g~dgv---~vg~al 226 (243)
T cd04731 158 VEELGAGEILLTSMDRDGTKKGY-DLELIRAVSSAVN----IPVIASGGAG---KPEHFVEAFEEGGADAA---LAASIF 226 (243)
T ss_pred HHHCCCCEEEEeccCCCCCCCCC-CHHHHHHHHhhCC----CCEEEeCCCC---CHHHHHHHHHhCCCCEE---EEeHHH
Confidence 89999999888 4444443322 3456777776652 3454433111 12334444554 66655 222211
Q ss_pred ccCcccHHHHHHHHH
Q 006969 320 RAGNASLEEVVMAFK 334 (623)
Q Consensus 320 RaGNa~lEevv~~L~ 334 (623)
-.|..+++++...|+
T Consensus 227 ~~~~~~~~~~~~~~~ 241 (243)
T cd04731 227 HFGEYTIAELKEYLA 241 (243)
T ss_pred HcCCCCHHHHHHHHh
Confidence 235556666665554
No 225
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=89.36 E-value=35 Score=39.24 Aligned_cols=177 Identities=17% Similarity=0.139 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHhHcC--CCEEEEec----CCCChhHH--HHHHHHHHHhcccc---------c-----cCCCccceEE
Q 006969 98 LTSKEKLDIARQLAKLG--VDIIEAGF----PAASKEDF--EAVRTIAKEVGNAV---------D-----AESGYVPVIC 155 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~G--vd~IEvGf----P~~s~~d~--e~v~~i~~~~~~~~---------~-----~~~~l~~~i~ 155 (623)
-+..|...=.++|..+| +|.||+-+ +.+-|.+. .+++.+.+.+..-. . .... ...+.
T Consensus 115 dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a-~~~~v 193 (522)
T TIGR01211 115 DPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETS-KHRCV 193 (522)
T ss_pred CcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcc-cCCeE
Confidence 46678787888888888 67788843 44445442 45565555432200 0 0000 01222
Q ss_pred eecc-cchhhHH-HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC-CCC
Q 006969 156 GLSR-CNERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSD 232 (623)
Q Consensus 156 ~~~r-~~~~dI~-~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~-r~d 232 (623)
+++- ++++-+. .-++.++.+|..+|.+=+-+.+-.+...+|+. ...+.+.++++.+|+.|++ |.+..+.+- ..+
T Consensus 194 gitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg--ht~~~v~~Ai~~lr~~G~~-v~~~LM~GLPgqt 270 (522)
T TIGR01211 194 GLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRG--HTVRDVVEATRLLRDAGLK-VVYHIMPGLPGSS 270 (522)
T ss_pred EEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCe-EEEEeecCCCCCC
Confidence 3221 2233332 23566778899999887766666666666653 2245667789999999985 766554332 356
Q ss_pred HHHHHHHHHHHHH---cCCcEEeecCcc-------------c---ccCHHHHHHHHHHHHHhCCC
Q 006969 233 RKFLYEILGEVIK---VGATTLNIPDTV-------------G---ITMPTEFGKLIADIKANTPG 278 (623)
Q Consensus 233 ~e~l~~~~~~~~~---aGa~~I~l~DTv-------------G---~~~P~~v~~li~~l~~~~~~ 278 (623)
++...+.++.+.+ .++|.|.|--+. | ..+++++.+++..+.+.+|.
T Consensus 271 ~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~ 335 (522)
T TIGR01211 271 FERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK 335 (522)
T ss_pred HHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 6777788888875 788887776532 2 23567788888888888873
No 226
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.36 E-value=14 Score=39.25 Aligned_cols=205 Identities=19% Similarity=0.202 Sum_probs=116.0
Q ss_pred HHHHhHcCCCEEEEe----------cCCCC---hh-HHHHHHHHHHHhccccccCCCccceEE----eecccchhhHHHH
Q 006969 107 ARQLAKLGVDIIEAG----------FPAAS---KE-DFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTA 168 (623)
Q Consensus 107 a~~L~~~Gvd~IEvG----------fP~~s---~~-d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a 168 (623)
|+...++|++.|=++ +|-.. -+ -.+.+++|++.+. .|.++ |++ +...+.+.
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~---------iPviaD~d~GyG--~~~~v~r~ 98 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACD---------LPLLVDIDTGFG--GAFNIART 98 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCC--CHHHHHHH
Confidence 466677888887553 23211 11 1355666665431 13333 233 55667777
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHH
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVI 244 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~ 244 (623)
++.+..+|+..|||-..+++-++-+.-+ .+.++..++++.+++..+ +.+.+...=-|+ .....+..++=+++..
T Consensus 99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~~~~g~deAI~Ra~aY~ 176 (292)
T PRK11320 99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFVIMARTDALAVEGLDAAIERAQAYV 176 (292)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeEEEEecCcccccCHHHHHHHHHHHH
Confidence 7777778999999988776533322112 377888888776655443 333222111122 1234677777788899
Q ss_pred HcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcc
Q 006969 245 KVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNA 324 (623)
Q Consensus 245 ~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa 324 (623)
++|||.|.++ |..+++++.++.+.+. .| +.+-+-.....++= +.-.--+.|+++|-.....+ |+-..
T Consensus 177 eAGAD~ifi~---~~~~~~~i~~~~~~~~--~P----l~~n~~~~~~~p~~--s~~~L~~lGv~~v~~~~~~~--~aa~~ 243 (292)
T PRK11320 177 EAGADMIFPE---AMTELEMYRRFADAVK--VP----ILANITEFGATPLF--TTEELASAGVAMVLYPLSAF--RAMNK 243 (292)
T ss_pred HcCCCEEEec---CCCCHHHHHHHHHhcC--CC----EEEEeccCCCCCCC--CHHHHHHcCCcEEEEChHHH--HHHHH
Confidence 9999999996 5667888888777652 23 21122222211111 12334456988885443322 55556
Q ss_pred cHHHHHHHHHhcc
Q 006969 325 SLEEVVMAFKCRG 337 (623)
Q Consensus 325 ~lEevv~~L~~~~ 337 (623)
.+++++..|...|
T Consensus 244 a~~~~~~~l~~~g 256 (292)
T PRK11320 244 AAENVYEAIRRDG 256 (292)
T ss_pred HHHHHHHHHHHcC
Confidence 6666666666543
No 227
>PRK15108 biotin synthase; Provisional
Probab=89.34 E-value=2.1 Score=46.29 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcc--cCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHH-HH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSP--EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD-IK 273 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~--eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~-l~ 273 (623)
++.||+++. ++.+++.|+..+.... ++-...+.+++.++++.+.+.|+ .++.|+|.++++.+.+|.+. +.
T Consensus 76 ls~eEI~~~----a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i---~v~~s~G~ls~e~l~~LkeAGld 148 (345)
T PRK15108 76 MEVEQVLES----ARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGL---ETCMTLGTLSESQAQRLANAGLD 148 (345)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCC---EEEEeCCcCCHHHHHHHHHcCCC
Confidence 577776664 4456678887654421 12233466999999999988775 34578999998777777554 22
Q ss_pred H------hCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 274 A------NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 274 ~------~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
. ..|+ .-=.+|+..++---+.....|.++|...--+-+.|+|| ..|+.+..+.
T Consensus 149 ~~n~~leT~p~---~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE-----t~ed~v~~~~ 207 (345)
T PRK15108 149 YYNHNLDTSPE---FYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE-----TVKDRAGLLL 207 (345)
T ss_pred EEeeccccChH---hcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC-----CHHHHHHHHH
Confidence 0 0111 00134566677777888888899998655567999998 3455554443
No 228
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.30 E-value=7.8 Score=40.70 Aligned_cols=163 Identities=27% Similarity=0.291 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEe--cCCCCh------hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAG--FPAASK------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~------~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (623)
.+.++-.+.++.+.+.|+|.||+- .|.... ++.+++.++.+.+...+ + .|...=+ +...+++..-.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~----~Pv~vKl-~~~~~~~~~~a 172 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-D----VPVIVKL-TPNVTDIVEIA 172 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-C----CCEEEEe-CCCchhHHHHH
Confidence 357889999999999999999994 353321 23345555544443221 1 1332222 22333444444
Q ss_pred HHHhcCCCCEEEEEecCCHH--HHHHH---h-----CCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCHHHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGI--HMEHK---L-----RKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~--h~~~~---l-----~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~e~l~~ 238 (623)
+.+..+|++.|.++..+... |.+.. + +.+-........+.++.+++. ++. |.. .++-.+++.+.+
T Consensus 173 ~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip-ii~---~GGI~~~~da~~ 248 (296)
T cd04740 173 RAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP-IIG---VGGIASGEDALE 248 (296)
T ss_pred HHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC-EEE---ECCCCCHHHHHH
Confidence 55566799988776543321 11100 0 111111112233445555543 333 322 244567776655
Q ss_pred HHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHh
Q 006969 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
++ ++|||.|.++=..=. .|+-+.++.+.+.+.
T Consensus 249 ~l----~~GAd~V~igra~l~-~p~~~~~i~~~l~~~ 280 (296)
T cd04740 249 FL----MAGASAVQVGTANFV-DPEAFKEIIEGLEAY 280 (296)
T ss_pred HH----HcCCCEEEEchhhhc-ChHHHHHHHHHHHHH
Confidence 54 479999988744433 688888777777654
No 229
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.29 E-value=33 Score=36.50 Aligned_cols=196 Identities=17% Similarity=0.068 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.+..+.-.++++.|.+.||+-|=+ | |+.-+.+|. +.++...+... +.+|.|.+.+....++.-...+
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-------grvpvi~Gv~~~~t~~ai~~a~ 97 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-------GRVPVFVGATTLNTRDTIARTR 97 (309)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-------CCCCEEEEeccCCHHHHHHHHH
Confidence 478888899999999999999876 3 466666665 44555566543 3357888877655554433334
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC--CCCHHHHHHHHHHHHHcCC
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG--RSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~--r~d~e~l~~~~~~~~~aGa 248 (623)
....+|++.+-+..|- -+..+.+++++-.++.++... ++..+.|+....+ ..+++.+.++ .+ -.
T Consensus 98 ~A~~~Gad~vlv~~P~-------y~~~~~~~l~~yf~~va~a~~--~lPv~iYn~P~~tg~~l~~~~l~~L----~~-~p 163 (309)
T cd00952 98 ALLDLGADGTMLGRPM-------WLPLDVDTAVQFYRDVAEAVP--EMAIAIYANPEAFKFDFPRAAWAEL----AQ-IP 163 (309)
T ss_pred HHHHhCCCEEEECCCc-------CCCCCHHHHHHHHHHHHHhCC--CCcEEEEcCchhcCCCCCHHHHHHH----hc-CC
Confidence 4456799988776553 134566776666555544321 3554556433332 3455555444 43 35
Q ss_pred cEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHH
Q 006969 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (623)
Q Consensus 249 ~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEe 328 (623)
..+.+.||. ....+.+++..+. ++ +.+-+..|. + +.+...|+...++.+.| .+|.-.|.
T Consensus 164 nivgiKdss---d~~~~~~~i~~~~---~~-----~~v~~g~d~-~-----l~~~~~~~~~~~G~is~----~~n~~P~~ 222 (309)
T cd00952 164 QVVAAKYLG---DIGALLSDLAAVK---GR-----MRLLPLEDD-Y-----YAAARLFPEEVTAFWSS----GAACGPAP 222 (309)
T ss_pred CEEEEEecC---ChHHHHHHHHHcC---CC-----eEEeecchh-H-----HHHHHhcCccCccEEEe----ccccCcHH
Confidence 899999985 3345555554332 11 444444442 1 23344455434444444 45555555
Q ss_pred HHHHHH
Q 006969 329 VVMAFK 334 (623)
Q Consensus 329 vv~~L~ 334 (623)
.+...+
T Consensus 223 ~~~l~~ 228 (309)
T cd00952 223 VTALRD 228 (309)
T ss_pred HHHHHH
Confidence 554444
No 230
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=89.23 E-value=33 Score=36.34 Aligned_cols=182 Identities=20% Similarity=0.268 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChh-H----HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-D----FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d----~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+++.-.+.+.+.|=--+|..... . ...++.+++.. -+|...=|=-+ ..+++.+|++
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~---------~vPValHLDH~~~~e~i~~ai~ 94 (287)
T PF01116_consen 24 VYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEA---------SVPVALHLDHGKDFEDIKRAID 94 (287)
T ss_dssp -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHS---------TSEEEEEEEEE-SHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHc---------CCCEEeecccCCCHHHHHHHHH
Confidence 46788999999999999998764434432111 1 13445555542 13443332222 3566777777
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccC---------CCCCCHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED---------AGRSDRKF 235 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~ed---------a~r~d~e~ 235 (623)
+ |...|-+ ..+ ..+.+||++..++.+++|+..|+. |+- +-|| ...|||+.
T Consensus 95 ~----GftSVM~-DgS---------~l~~eeNi~~T~~vv~~ah~~gv~-VEaElG~i~g~ed~~~~~~~~~~~~TdP~~ 159 (287)
T PF01116_consen 95 A----GFTSVMI-DGS---------ALPFEENIAITREVVEYAHAYGVS-VEAELGHIGGKEDGIESEEETESLYTDPEE 159 (287)
T ss_dssp H----TSSEEEE-E-T---------TS-HHHHHHHHHHHHHHHHHTT-E-EEEEESBSSSSCTTCSSSTT-TTCSSSHHH
T ss_pred h----Ccccccc-cCC---------cCCHHHHHHHHHHHHHhhhhhCCE-EEEEeeeeeccCCCccccccccccccCHHH
Confidence 6 8888743 332 357899999999999999999974 542 2222 23478998
Q ss_pred HHHHHHHHHHcCCcEEeecCcccc------c--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCC
Q 006969 236 LYEILGEVIKVGATTLNIPDTVGI------T--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGA 307 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~DTvG~------~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA 307 (623)
+.++++ +-|+|.+-+ ++|. . .|.-=.++++.+++.+| ++||.+| --.|+.--.-..|+..|+
T Consensus 160 a~~Fv~---~TgvD~LAv--aiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~---~iPLVlH--GgSG~~~e~~~~ai~~Gi 229 (287)
T PF01116_consen 160 AKEFVE---ETGVDALAV--AIGTAHGMYKGGKKPKLDFDRLKEIREAVP---DIPLVLH--GGSGLPDEQIRKAIKNGI 229 (287)
T ss_dssp HHHHHH---HHTTSEEEE---SSSBSSSBSSSSSTC--HHHHHHHHHHHH---TSEEEES--SCTTS-HHHHHHHHHTTE
T ss_pred HHHHHH---HhCCCEEEE--ecCccccccCCCCCcccCHHHHHHHHHhcC---CCCEEEE--CCCCCCHHHHHHHHHcCc
Confidence 887776 459987555 3441 2 45545678888888874 2678765 467788888999999998
Q ss_pred CEEEe
Q 006969 308 RQVEV 312 (623)
Q Consensus 308 ~~Vd~ 312 (623)
.-|+.
T Consensus 230 ~KiNi 234 (287)
T PF01116_consen 230 SKINI 234 (287)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88743
No 231
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=89.18 E-value=7.1 Score=42.27 Aligned_cols=141 Identities=23% Similarity=0.257 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceE--Ee------ecccch-------h
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI--CG------LSRCNE-------R 163 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i--~~------~~r~~~-------~ 163 (623)
..+.-++=++.|.++|.+.+=+..| +.++.+.++.|.+...-.+..|.-+.+.+ .+ --|-|+ +
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~ 117 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRDE 117 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHH
Confidence 4455566678889999999999887 35677888888776432211111110000 00 002222 2
Q ss_pred hHHHHHHHHhcCCCC-EEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHH
Q 006969 164 DIKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (623)
Q Consensus 164 dI~~a~eal~~a~~~-~v~i~~~~Sd~h~~~~l~~-t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~ 241 (623)
.++.-+++.++.+++ ||.+-..+-+-.+..+++. +.+..++-+.+.++.+.++|+.++.+|.- -+|+....+..+
T Consensus 118 ~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K---sS~v~~~i~ayr 194 (360)
T PRK00366 118 RVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK---ASDVQDLIAAYR 194 (360)
T ss_pred HHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHH
Confidence 233445555556666 5666555555566667776 78888888888888888888877777763 345555555555
Q ss_pred HHH
Q 006969 242 EVI 244 (623)
Q Consensus 242 ~~~ 244 (623)
.+.
T Consensus 195 lla 197 (360)
T PRK00366 195 LLA 197 (360)
T ss_pred HHH
Confidence 444
No 232
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=89.17 E-value=33 Score=38.66 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHH-----hHcC----CCEEEEecCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHH
Q 006969 98 LTSKEKLDIARQL-----AKLG----VDIIEAGFPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L-----~~~G----vd~IEvGfP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (623)
++.++-.+-++.+ .+.| .|.|-+|++...|+.+ ..++.+.+.. ++ | ++.- -.+.+-+++
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~--------dv-P-LSID-T~dpevlea 170 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETT--------DL-P-LILC-SEDPAVLKA 170 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhc--------CC-C-EEEe-CCCHHHHHH
Confidence 4555555555555 4556 9999999987666543 4555555432 11 2 2222 246667777
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG 247 (623)
++++ +.+.+.+..+.+. ++..++++.++++|+. |...+.+ .+++.++++.+.++|
T Consensus 171 Alea----gad~~plI~Sat~---------------dN~~~m~~la~~yg~p-vVv~~~d-----l~~L~~lv~~~~~~G 225 (450)
T PRK04165 171 ALEV----VADRKPLLYAATK---------------ENYEEMAELAKEYNCP-LVVKAPN-----LEELKELVEKLQAAG 225 (450)
T ss_pred HHHh----cCCCCceEEecCc---------------chHHHHHHHHHHcCCc-EEEEchh-----HHHHHHHHHHHHHcC
Confidence 7776 5555555555431 2334566777888886 5554433 889999999999999
Q ss_pred CcEEeecCccc
Q 006969 248 ATTLNIPDTVG 258 (623)
Q Consensus 248 a~~I~l~DTvG 258 (623)
...|.| |...
T Consensus 226 I~dIIL-DPg~ 235 (450)
T PRK04165 226 IKDLVL-DPGT 235 (450)
T ss_pred CCcEEE-CCCC
Confidence 977776 4433
No 233
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.13 E-value=9.7 Score=40.47 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=84.5
Q ss_pred HHHHhcCCCCEEEEEecC--------CH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEcccCC--CCCC
Q 006969 169 WEAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDA--GRSD 232 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~--------Sd--~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~---~V~f~~eda--~r~d 232 (623)
.+..+.+|.+.|.|-..- |+ .++..++|-+.+.-.+.+.+.++.+|+. |-+ .|.+++.+. ...+
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~ 226 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLT 226 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCC
Confidence 344566899998876542 33 2444567778888788888888888875 322 234566432 2357
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCcccccC----------HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 006969 233 RKFLYEILGEVIKVGATTLNIPDTVGITM----------PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (623)
Q Consensus 233 ~e~l~~~~~~~~~aGa~~I~l~DTvG~~~----------P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 302 (623)
++...++++.+.++|++.|.+........ +....++++.+++.++ +||..-.--. -...+..+
T Consensus 227 ~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~----iPVi~~Ggi~---t~~~a~~~ 299 (327)
T cd02803 227 LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK----IPVIAVGGIR---DPEVAEEI 299 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC----CCEEEeCCCC---CHHHHHHH
Confidence 88899999999999999998754332111 1233467777887763 4454322111 24556677
Q ss_pred HHh-CCCEE
Q 006969 303 ACA-GARQV 310 (623)
Q Consensus 303 v~a-GA~~V 310 (623)
++. ||+.|
T Consensus 300 l~~g~aD~V 308 (327)
T cd02803 300 LAEGKADLV 308 (327)
T ss_pred HHCCCCCee
Confidence 777 67765
No 234
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=89.04 E-value=2.6 Score=44.24 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=83.2
Q ss_pred Eccc-CCCCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHH
Q 006969 223 FSPE-DAGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTA 297 (623)
Q Consensus 223 f~~e-da~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvA 297 (623)
+.|- +.+..|.+-+.+.++.+.+.|++.|.++-|+| .++++|-.++++.+.+..++ +++|-+|. +++.--++.
T Consensus 10 ~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~~~~~~i~ 87 (292)
T PRK03170 10 VTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG--RVPVIAGTGSNSTAEAIE 87 (292)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC--CCcEEeecCCchHHHHHH
Confidence 3444 24578999999999999999999999999998 56899999999999998765 35666665 678899999
Q ss_pred HHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 298 NslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
-+..|-++||+.|=..---+.. .+-++++..++.
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~~----~~~~~i~~~~~~ 121 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYNK----PTQEGLYQHFKA 121 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCCC----CCHHHHHHHHHH
Confidence 9999999999998776554432 233555555443
No 235
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=88.90 E-value=8.6 Score=40.75 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc----------c---ccCHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV----------G---ITMPT 263 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv----------G---~~~P~ 263 (623)
.+.+|.++.+.+.++.. .+. |..+.|+++-.++ .+.+.++.++++|+..|+|-|.+ | ...++
T Consensus 58 l~~~e~~~~~~~I~~~~---~lP-v~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~e 132 (290)
T TIGR02321 58 LSMSTHLEMMRAIASTV---SIP-LIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIE 132 (290)
T ss_pred CCHHHHHHHHHHHHhcc---CCC-EEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHH
Confidence 46778877776655543 355 8889987777776 58999999999999999999975 1 34667
Q ss_pred HHHHHHHHHHHhCCCCcceeEEEee-----cCCcchHHHHHHHHHHhCCCEE
Q 006969 264 EFGKLIADIKANTPGIENVVISTHC-----QNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 264 ~v~~li~~l~~~~~~~~~v~i~~H~-----HND~GlAvANslaAv~aGA~~V 310 (623)
++.+.|+..++.-.+. +..|-.=+ -..+--++.-+.+..+||||.|
T Consensus 133 e~~~kI~Aa~~a~~~~-d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~i 183 (290)
T TIGR02321 133 EFQGKIAAATAARADR-DFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAI 183 (290)
T ss_pred HHHHHHHHHHHhCCCC-CEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEE
Confidence 7777888777642221 12221111 1123456677778888898876
No 236
>PLN02417 dihydrodipicolinate synthase
Probab=88.62 E-value=3.4 Score=43.32 Aligned_cols=107 Identities=21% Similarity=0.163 Sum_probs=83.8
Q ss_pred EcccC-CCCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHH
Q 006969 223 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTA 297 (623)
Q Consensus 223 f~~ed-a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvA 297 (623)
+.|-| .+..|.+-+.+.++.+.+.|++.|.++-|.| .++.+|-.++++.+.+..++ +++|-+|+ +++.--++.
T Consensus 10 ~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~--~~pvi~gv~~~~t~~~i~ 87 (280)
T PLN02417 10 KTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG--KIKVIGNTGSNSTREAIH 87 (280)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEEECCCccHHHHHH
Confidence 35543 4578999999999999999999999999999 45888999999988887765 46777776 788888999
Q ss_pred HHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 298 NslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
-+..|-++||+.|-..---+. ..+-++++..++.
T Consensus 88 ~a~~a~~~Gadav~~~~P~y~----~~~~~~i~~~f~~ 121 (280)
T PLN02417 88 ATEQGFAVGMHAALHINPYYG----KTSQEGLIKHFET 121 (280)
T ss_pred HHHHHHHcCCCEEEEcCCccC----CCCHHHHHHHHHH
Confidence 999999999999877544332 2345666665543
No 237
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=88.58 E-value=3.1 Score=43.83 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=82.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CcEEeecCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHH
Q 006969 228 AGRSDRKFLYEILGEVIKVG-ATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAG 302 (623)
Q Consensus 228 a~r~d~e~l~~~~~~~~~aG-a~~I~l~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaA 302 (623)
.++.|.+-+.+.++.+++.| ++.|.++-|+|= ++++|-.++++.+.+...+ +++|-+|. +++.--++.-+..|
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD--QIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHH
Confidence 45799999999999999999 999999999874 6899999999999888765 57888885 88888899999999
Q ss_pred HHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 303 ACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 303 v~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
.++||+.|=..--- --+ .+-++++..++.
T Consensus 93 ~~~Gad~v~v~~P~-y~~---~~~~~i~~yf~~ 121 (290)
T TIGR00683 93 TELGYDCLSAVTPF-YYK---FSFPEIKHYYDT 121 (290)
T ss_pred HHhCCCEEEEeCCc-CCC---CCHHHHHHHHHH
Confidence 99999998774432 222 235677666554
No 238
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=88.58 E-value=9.8 Score=42.37 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=71.5
Q ss_pred chhhHHHH-HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCC-CCHHHHHH
Q 006969 161 NERDIKTA-WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR-SDRKFLYE 238 (623)
Q Consensus 161 ~~~dI~~a-~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r-~d~e~l~~ 238 (623)
++.+++.. +++++.+|+.||.+.+-+.+--+.+.+|+... -+.+.++++.+++.|+..|.++...+-. -+.+.+.+
T Consensus 131 nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~--~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~ 208 (416)
T COG0635 131 NPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHD--EEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKE 208 (416)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCC--HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHH
Confidence 55555433 56778889999999998888888888988644 3667789999999999878777665443 36688889
Q ss_pred HHHHHHHcCCcEEee
Q 006969 239 ILGEVIKVGATTLNI 253 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l 253 (623)
.++.++++++++|.+
T Consensus 209 ~l~~a~~l~pdhis~ 223 (416)
T COG0635 209 DLEQALELGPDHLSL 223 (416)
T ss_pred HHHHHHhCCCCEEEE
Confidence 999999999998875
No 239
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.57 E-value=27 Score=34.46 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~ 178 (623)
+.++-+++++.+.+.|++.||+-+-. +...+.++.+.+... .+ .+.+-+-...++++.|+++ |.+
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~--~~~~e~~~~~~~~~~-~~--------~~g~gtvl~~d~~~~A~~~----gAd 86 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNS--DQPAELISQLREKLP-EC--------IIGTGTILTLEDLEEAIAA----GAQ 86 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCC-Cc--------EEeEEEEEcHHHHHHHHHc----CCC
Confidence 78899999999999999999997643 334556665554321 11 0111111245778888775 888
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCccc
Q 006969 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG 258 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG 258 (623)
-||+.- .+ .+.+++++..+.. ...+ -.+++.+ ..+.+.|+|.|.+=-|.-
T Consensus 87 gv~~p~--~~------------------~~~~~~~~~~~~~-~i~G-----~~t~~e~----~~A~~~Gadyv~~Fpt~~ 136 (187)
T PRK07455 87 FCFTPH--VD------------------PELIEAAVAQDIP-IIPG-----ALTPTEI----VTAWQAGASCVKVFPVQA 136 (187)
T ss_pred EEECCC--CC------------------HHHHHHHHHcCCC-EEcC-----cCCHHHH----HHHHHCCCCEEEECcCCc
Confidence 886421 11 1344566666654 2222 3454443 344568999988733311
Q ss_pred ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 259 ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 259 ~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
..- -+.++.++..+|..+=+++ -|.-..|.-.-+++||+.|
T Consensus 137 ~~G----~~~l~~~~~~~~~ipvvai-------GGI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 137 VGG----ADYIKSLQGPLGHIPLIPT-------GGVTLENAQAFIQAGAIAV 177 (187)
T ss_pred ccC----HHHHHHHHhhCCCCcEEEe-------CCCCHHHHHHHHHCCCeEE
Confidence 111 3457777776664332333 4666789999999999876
No 240
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=88.49 E-value=10 Score=40.98 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCc--EEee--cCcccccCHHHHHH--HHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 006969 232 DRKFLYEILGEVIKVGAT--TLNI--PDTVGITMPTEFGK--LIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~--~I~l--~DTvG~~~P~~v~~--li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 305 (623)
+.+.+.+.++.+.+.|.. .|.| | |.++-+|.+-.. .|..|++.++ ++|++=-|- .| ..-+++|+..
T Consensus 144 tl~Ei~~Av~~i~~~G~~~~~i~llhC-~s~YP~~~~~~nL~~I~~Lk~~f~----~pVG~SdHt-~G--~~~~~aAval 215 (329)
T TIGR03569 144 TLEEIEAAVGVLRDAGTPDSNITLLHC-TTEYPAPFEDVNLNAMDTLKEAFD----LPVGYSDHT-LG--IEAPIAAVAL 215 (329)
T ss_pred CHHHHHHHHHHHHHcCCCcCcEEEEEE-CCCCCCCcccCCHHHHHHHHHHhC----CCEEECCCC-cc--HHHHHHHHHc
Confidence 444444444444444432 1222 3 234444444333 4778888874 568875554 34 6777999999
Q ss_pred CCCEEEecc
Q 006969 306 GARQVEVTI 314 (623)
Q Consensus 306 GA~~Vd~Tv 314 (623)
||+.|+-=+
T Consensus 216 GA~iIEkH~ 224 (329)
T TIGR03569 216 GATVIEKHF 224 (329)
T ss_pred CCCEEEeCC
Confidence 999987543
No 241
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=88.43 E-value=11 Score=40.41 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceE--------Eeecccchh------hH
Q 006969 100 SKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI--------CGLSRCNER------DI 165 (623)
Q Consensus 100 ~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i--------~~~~r~~~~------dI 165 (623)
.+.-+.=...|.++|.|.+-+.-| ..++.++++.|.+.+.-.+..|.-|.+++ +.--|-|+- -+
T Consensus 35 v~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v 112 (361)
T COG0821 35 VEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRV 112 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHH
Confidence 444555577889999999999776 35678899999887532221111111111 011133322 24
Q ss_pred HHHHHHHhcCCCC-EEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHH
Q 006969 166 KTAWEAVKYAKRP-RIHTFIATSGIHMEHKL-RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEV 243 (623)
Q Consensus 166 ~~a~eal~~a~~~-~v~i~~~~Sd~h~~~~l-~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~ 243 (623)
..-+++.++.|.+ ||.+-..+-|-.+..++ +-|+|..++-+...++++.++|+..+.+|.- -+|+..+.+..+.+
T Consensus 113 ~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K---~Sdv~~~v~aYr~l 189 (361)
T COG0821 113 REVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVK---ASDVQLMVAAYRLL 189 (361)
T ss_pred HHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHHHH
Confidence 4445666666777 68887776677777777 6688999999999999999999987777763 35666565555544
Q ss_pred H
Q 006969 244 I 244 (623)
Q Consensus 244 ~ 244 (623)
.
T Consensus 190 A 190 (361)
T COG0821 190 A 190 (361)
T ss_pred H
Confidence 4
No 242
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=88.28 E-value=3.2 Score=43.33 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=82.7
Q ss_pred EcccC-CCCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEeec-CCcchHHH
Q 006969 223 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTA 297 (623)
Q Consensus 223 f~~ed-a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~H-ND~GlAvA 297 (623)
+.|-+ .++.|.+-+.+.++.+++.|++.|.++-|+| .++.+|-.++++.+.+...+ +++|-+|.- ++..-++.
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~~~~~~ 86 (284)
T cd00950 9 VTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG--RVPVIAGTGSNNTAEAIE 86 (284)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEeccCCccHHHHHH
Confidence 34442 4578999999999999999999999999998 56889999999999988764 466777764 57888899
Q ss_pred HHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 298 NslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
-+..|.++||+.|-..--.+.. .+-++++..++.
T Consensus 87 ~a~~a~~~G~d~v~~~~P~~~~----~~~~~l~~~~~~ 120 (284)
T cd00950 87 LTKRAEKAGADAALVVTPYYNK----PSQEGLYAHFKA 120 (284)
T ss_pred HHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHH
Confidence 9999999999998776544322 233555555543
No 243
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=88.26 E-value=9.3 Score=41.40 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=83.8
Q ss_pred HHHhcCCCCEEEEEecC--------CH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEcccCCC--CCCH
Q 006969 170 EAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDAG--RSDR 233 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~--------Sd--~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~---~V~f~~eda~--r~d~ 233 (623)
+..+.+|.+.|.|..+- |+ .++..++|=|.+.-.+.+.+.++.+|+. |.+ .+.+++.|.. ..++
T Consensus 144 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~ 223 (353)
T cd02930 144 ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTW 223 (353)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCH
Confidence 33466899999886531 33 3556677778888888888888888875 433 2345665532 3688
Q ss_pred HHHHHHHHHHHHcCCcEEeecCccccc---C-------HH-HHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGIT---M-------PT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~---~-------P~-~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 302 (623)
+...++++.+.++|+|.|.+ |.|.. + |. ....+.+.+++.++ +||..-.--. ....+..+
T Consensus 224 ~e~~~i~~~Le~~G~d~i~v--s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~----iPVi~~G~i~---~~~~a~~~ 294 (353)
T cd02930 224 EEVVALAKALEAAGADILNT--GIGWHEARVPTIATSVPRGAFAWATAKLKRAVD----IPVIASNRIN---TPEVAERL 294 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEe--CCCcCCCCCccccccCCchhhHHHHHHHHHhCC----CCEEEcCCCC---CHHHHHHH
Confidence 88999999999999999988 33321 1 11 13445667777763 4555432211 23556666
Q ss_pred HHhC-CCEE
Q 006969 303 ACAG-ARQV 310 (623)
Q Consensus 303 v~aG-A~~V 310 (623)
++.| +|.|
T Consensus 295 i~~g~~D~V 303 (353)
T cd02930 295 LADGDADMV 303 (353)
T ss_pred HHCCCCChh
Confidence 7765 5543
No 244
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=88.26 E-value=7.4 Score=40.74 Aligned_cols=110 Identities=16% Similarity=0.063 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHH
Q 006969 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVI 244 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~ 244 (623)
+++-++.+...|++.+-+..++++.+ .+|.+|-.+.+..+++.++.. + .|..+. +..+.+..++.++.+.
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~-----~Lt~~Er~~l~~~~~~~~~~~-~-~vi~gv---~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFY-----SLTDEERKELLEIVVEAAAGR-V-PVIAGV---GANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGG-----GS-HHHHHHHHHHHHHHHTTS-S-EEEEEE---ESSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHccCc-e-EEEecC---cchhHHHHHHHHHHHh
Confidence 34445556667888888888888754 367888777777777766432 2 244433 3456788888888888
Q ss_pred HcCCcEEe-ecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEee
Q 006969 245 KVGATTLN-IPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC 288 (623)
Q Consensus 245 ~aGa~~I~-l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~ 288 (623)
++|||.+. ++=-....+++++.+.++.+.+..+ +||-++-
T Consensus 94 ~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~----~pi~iYn 134 (289)
T PF00701_consen 94 DAGADAVLVIPPYYFKPSQEELIDYFRAIADATD----LPIIIYN 134 (289)
T ss_dssp HTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS----SEEEEEE
T ss_pred hcCceEEEEeccccccchhhHHHHHHHHHHhhcC----CCEEEEE
Confidence 89988664 4344556788888888888887653 4566543
No 245
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=88.20 E-value=3.7 Score=41.89 Aligned_cols=200 Identities=22% Similarity=0.289 Sum_probs=100.7
Q ss_pred CCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 93 SPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 93 ~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
+.+..|+-.+|+.+++.| |||.||..- .+.| + ++++. .|.+...-.+..+ +
T Consensus 13 Alp~~~sW~erl~~AK~~---GFDFvEmSv---DEsD-e---RLaRL----------------DWs~~er~~l~~a---i 63 (287)
T COG3623 13 ALPNGFSWLERLALAKEL---GFDFVEMSV---DESD-E---RLARL----------------DWSKEERLALVNA---I 63 (287)
T ss_pred hccCCCCHHHHHHHHHHc---CCCeEEEec---cchH-H---HHHhc----------------CCCHHHHHHHHHH---H
Confidence 446779999999999865 999999932 1212 1 11110 0111111112222 1
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCC----CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC--CCCH----HH---HHHH
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLRK----TKQQVVEIARSMVKFARSLGCDDVEFSPEDAG--RSDR----KF---LYEI 239 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~~----t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~--r~d~----e~---l~~~ 239 (623)
...|+..=.+..+ .|++.-||- ++++.++.+..+|..|+++|+..+....-|.+ ..|+ .| +...
T Consensus 64 ~etgv~ipSmClS---aHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a 140 (287)
T COG3623 64 QETGVRIPSMCLS---AHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWA 140 (287)
T ss_pred HHhCCCccchhhh---hhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHH
Confidence 2223221111111 255555542 57888999999999999999875443222222 1222 22 2333
Q ss_pred HHHHHHcCCc-EEeecCcccccCHHHHHHHHHHHHHh----CCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe--
Q 006969 240 LGEVIKVGAT-TLNIPDTVGITMPTEFGKLIADIKAN----TPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV-- 312 (623)
Q Consensus 240 ~~~~~~aGa~-~I~l~DTvG~~~P~~v~~li~~l~~~----~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~-- 312 (623)
++.+.++++. .+-+-||-=..+-.....+.+.+..- +|++.++ .-.||| ...=+..|.+.|-+
T Consensus 141 ~~lA~~aqV~lAvEiMDtpfm~sIsk~~~~~~~I~sP~f~vYPDiGNl---saw~nd-------v~~El~lG~~~I~aiH 210 (287)
T COG3623 141 VELAARAQVMLAVEIMDTPFMNSISKWLKYDKYINSPWFTVYPDIGNL---SAWNND-------VQSELQLGIDKIVAIH 210 (287)
T ss_pred HHHHHhhccEEEeeecccHHHHHHHHHHHHHHHhCCCcEEecCCcccH---hhhhhh-------HHHHHHcCcCceEEEE
Confidence 4444455553 46666775444333343444443321 2322111 112332 23445566665422
Q ss_pred ---------ccCC------ccCccCcccHHHHHHHHHhc
Q 006969 313 ---------TING------IGERAGNASLEEVVMAFKCR 336 (623)
Q Consensus 313 ---------Tv~G------lGERaGNa~lEevv~~L~~~ 336 (623)
|.-| +| .|+++.+++...|+..
T Consensus 211 lKDTy~vte~~~GqFrdvpfG--eG~Vdf~~~f~~lk~~ 247 (287)
T COG3623 211 LKDTYAVTETSPGQFRDVPFG--EGCVDFEECFKTLKQL 247 (287)
T ss_pred ecccccccccCCCccccCCcC--CcchhHHHHHHHHHHh
Confidence 1222 34 4889999988888764
No 246
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=88.18 E-value=17 Score=41.24 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHH-hHcCCCEEEEe--cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhH---HHHHH
Q 006969 98 LTSKEKLDIARQL-AKLGVDIIEAG--FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI---KTAWE 170 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L-~~~Gvd~IEvG--fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI---~~a~e 170 (623)
.+++..++=++.| .+.|+..|... .|..+++.+ +.++.|.+.. . +.....+.+|.. ++ +.-++
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~--~------l~i~w~~~~r~~--~i~~d~ell~ 291 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARN--P------ISVTWGINTRVT--DIVRDADILH 291 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcC--C------CCeEEEEecccc--cccCCHHHHH
Confidence 4666666655555 45899988764 233444332 4445554421 0 112333444432 22 22356
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHcCCc
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~aGa~ 249 (623)
.++.+|..+|.+-+-+.+-.+...++|.. ..+...++++.++++|+. +..+..-+ -..+++.+.+.++.+.+.+++
T Consensus 292 ~l~~aG~~~v~iGiES~~~~~L~~~~K~~--t~~~~~~ai~~l~~~Gi~-~~~~~I~G~P~et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 292 LYRRAGLVHISLGTEAAAQATLDHFRKGT--TTSTNKEAIRLLRQHNIL-SEAQFITGFENETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHHHhCCcEEEEccccCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCc-EEEEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 67778998887754443334445566542 345667899999999986 43332222 135678888999999999998
Q ss_pred EEeecCcccccCHHHHHHHHHHHHHh
Q 006969 250 TLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 250 ~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
.+.+ ..++|..-..+.+.+++.
T Consensus 369 ~~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 369 QANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred ceEE----EEecCCCCcHHHHHHHhh
Confidence 8776 478887777777777664
No 247
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=88.04 E-value=12 Score=40.24 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=82.1
Q ss_pred CCCcccCCCCC----CCCCHHHHHHHHHHHhHcCCCEEEE-----ecCCCChhHHHHHHHHHHHhccccccCCCccceEE
Q 006969 85 TTLRDGEQSPG----ATLTSKEKLDIARQLAKLGVDIIEA-----GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC 155 (623)
Q Consensus 85 tTLRDG~Q~~g----~~~t~e~Kl~Ia~~L~~~Gvd~IEv-----GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~ 155 (623)
|+.=.|..+.- .....|.-++.++...+.-=+-+|+ |=|..-|--.+.++.+.+.-+.. . ..++
T Consensus 124 CSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~------v-VSmQ 196 (414)
T COG2100 124 CSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVE------V-VSMQ 196 (414)
T ss_pred EeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCce------E-EEEe
Confidence 44455655531 2346788888888888887778888 44666665566777776642221 1 1222
Q ss_pred eecc-cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHH
Q 006969 156 GLSR-CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (623)
Q Consensus 156 ~~~r-~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e 234 (623)
.-+- .+++ .++.|.++|.+||++.+.+-|--+.+.|-=-.+..++.+.++++++.+.|++ |-..|.--.-.+-+
T Consensus 197 Tng~~L~~~----lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~id-vlIaPv~lPG~ND~ 271 (414)
T COG2100 197 TNGVLLSKK----LVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGID-VLIAPVWLPGVNDD 271 (414)
T ss_pred eCceeccHH----HHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCC-EEEeeeecCCcChH
Confidence 2111 1222 3455667899999998776665444443222333445555555555555553 44444433333334
Q ss_pred HHHHHHHHHHHcC
Q 006969 235 FLYEILGEVIKVG 247 (623)
Q Consensus 235 ~l~~~~~~~~~aG 247 (623)
...++++.+.+.|
T Consensus 272 E~~~iIe~A~~iG 284 (414)
T COG2100 272 EMPKIIEWAREIG 284 (414)
T ss_pred HHHHHHHHHHHhC
Confidence 4444555554444
No 248
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=88.01 E-value=19 Score=41.08 Aligned_cols=129 Identities=9% Similarity=-0.023 Sum_probs=80.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 006969 227 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 227 da~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 306 (623)
|+.+. +++.+-++...+.|||.|-|.=-.+.-.|.++...|+.+++.+. ++|++=..| ..-..+|+++|
T Consensus 160 ~a~~l--~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~----~pISIDT~~-----~~v~eaAL~aG 228 (499)
T TIGR00284 160 PTVAE--DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALD----SPVIADTPT-----LDELYEALKAG 228 (499)
T ss_pred CCcch--HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCC----CcEEEeCCC-----HHHHHHHHHcC
Confidence 55554 78888899999999999998744444455678999999988652 678887776 45567899999
Q ss_pred CCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCCC--CCCcccC
Q 006969 307 ARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQ--PHKAIVG 376 (623)
Q Consensus 307 A~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i~--~~~pivG 376 (623)
|+.|. ++.| +| +++++..+...+...+ .+... ....+..+.+.++.+...-+. --=|++|
T Consensus 229 AdiIN-sVs~-----~~--~d~~~~l~a~~g~~vV-lm~~~-~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg 290 (499)
T TIGR00284 229 ASGVI-MPDV-----EN--AVELASEKKLPEDAFV-VVPGN-QPTNYEELAKAVKKLRTSGYSKVAADPSLS 290 (499)
T ss_pred CCEEE-ECCc-----cc--hhHHHHHHHHcCCeEE-EEcCC-CCchHHHHHHHHHHHHHCCCCcEEEeCCCC
Confidence 99998 6665 33 4455554554332111 11211 122334555666666444342 1235555
No 249
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.00 E-value=11 Score=41.67 Aligned_cols=164 Identities=21% Similarity=0.147 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHhHcCCCEEEE--ecCC-CCh--------hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHH
Q 006969 99 TSKEKLDIARQLAKLGVDIIEA--GFPA-ASK--------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEv--GfP~-~s~--------~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (623)
+.++-.++++.+.++|+|.||+ +.|. ... ++.+.+.+|.+.+...+ -.|.+.=+ +....++..
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-----~~Pv~vKl-~p~~~~~~~ 184 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-----RLPVIVKL-TPNITDIRE 184 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-----CCcEEEEc-CCCcccHHH
Confidence 5788899999999999999998 4464 111 34566666665543321 12332222 334455655
Q ss_pred HHHHHhcCCCCEEEEEecCCH--------------HHHHHH-hCCCHHHHHHHHHHHHHHHHHc----CCCeEEEcccCC
Q 006969 168 AWEAVKYAKRPRIHTFIATSG--------------IHMEHK-LRKTKQQVVEIARSMVKFARSL----GCDDVEFSPEDA 228 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd--------------~h~~~~-l~~t~ee~l~~~~~~v~~ak~~----G~~~V~f~~eda 228 (623)
..+++..+|++.|.++..+.. +|-... -+.|-........+.|..+++. .+. | +. -+
T Consensus 185 ~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ip-I-ig--~G 260 (420)
T PRK08318 185 PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLP-I-SG--IG 260 (420)
T ss_pred HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCC-E-Ee--ec
Confidence 556667789998887655543 111111 1344444455566677776664 233 2 22 24
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhC
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+=.+.+.+.+.+ .+||+.|-++=-.-+--|.-+.++++.+.+.+
T Consensus 261 GI~s~~da~e~i----~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l 304 (420)
T PRK08318 261 GIETWRDAAEFI----LLGAGTVQVCTAAMQYGFRIVEDMISGLSHYM 304 (420)
T ss_pred CcCCHHHHHHHH----HhCCChheeeeeeccCCchhHHHHHHHHHHHH
Confidence 456666666654 38999999876665556888888888876543
No 250
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.70 E-value=6.4 Score=42.39 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=84.0
Q ss_pred HHHHHhcCCCCEEEEEecC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEcccCCC--CC
Q 006969 168 AWEAVKYAKRPRIHTFIAT--------SGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDAG--RS 231 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~--------Sd~--h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~---~V~f~~eda~--r~ 231 (623)
|.+..+.+|.+.|.|-.+- |+. ++..++|=|.|+-.+...+.++.+|+. |-+ .|.+++++.. -.
T Consensus 154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~ 233 (338)
T cd04733 154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGF 233 (338)
T ss_pred HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCC
Confidence 3344567899999887663 554 555677878888888888888888875 322 1344554321 24
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCcccccC---------------HHHHHHHHHHHHHhCCCCcceeEEE-eecCCcchH
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDTVGITM---------------PTEFGKLIADIKANTPGIENVVIST-HCQNDLGLS 295 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~---------------P~~v~~li~~l~~~~~~~~~v~i~~-H~HND~GlA 295 (623)
+++...++++.+.++|++.|.+.. |... +.-..++.+.+++.+. +||.. -.. ..
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~----iPVi~~G~i----~t 303 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK----TPLMVTGGF----RT 303 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcC----CCEEEeCCC----CC
Confidence 778889999999999999998632 2110 1112356667777763 34432 111 13
Q ss_pred HHHHHHHHHhC-CCEE
Q 006969 296 TANTIAGACAG-ARQV 310 (623)
Q Consensus 296 vANslaAv~aG-A~~V 310 (623)
...+..+++.| ||.|
T Consensus 304 ~~~a~~~l~~g~aD~V 319 (338)
T cd04733 304 RAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHHcCCCCee
Confidence 46677777776 5655
No 251
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.69 E-value=3.8 Score=43.45 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=78.0
Q ss_pred EcccC-CCCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH
Q 006969 223 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298 (623)
Q Consensus 223 f~~ed-a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 298 (623)
+.|-+ .++.|.+-+.+.++.+++.|++.|.++-|.| .++++|-.++++.+.+...+ ++++-+|.-.+..-++..
T Consensus 16 vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~t~~~i~~ 93 (303)
T PRK03620 16 VTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG--RVPVIAGAGGGTAQAIEY 93 (303)
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCHHHHHHH
Confidence 45543 4578999999999999999999999999988 46899999999999887765 355555553356677778
Q ss_pred HHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 299 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 299 slaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
+..|-++||+.|-. +...--+. +-+++...++
T Consensus 94 ~~~a~~~Gadav~~-~pP~y~~~---~~~~i~~~f~ 125 (303)
T PRK03620 94 AQAAERAGADGILL-LPPYLTEA---PQEGLAAHVE 125 (303)
T ss_pred HHHHHHhCCCEEEE-CCCCCCCC---CHHHHHHHHH
Confidence 88899999999855 33332222 3455555444
No 252
>PRK05660 HemN family oxidoreductase; Provisional
Probab=87.69 E-value=11 Score=41.36 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=83.4
Q ss_pred cCCCEEEEe--cCCCC-hhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHH-HHHHHhcCCCCEEEEEecCC
Q 006969 113 LGVDIIEAG--FPAAS-KEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT-AWEAVKYAKRPRIHTFIATS 187 (623)
Q Consensus 113 ~Gvd~IEvG--fP~~s-~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~-a~eal~~a~~~~v~i~~~~S 187 (623)
.+|+.|=+| -|..- +++. +.++.+.+..+.. . + ..+..-+ ++.++.. -++.++.+|+.+|.+-+-+.
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~--~--~--~eit~e~--np~~l~~e~l~~Lk~~Gv~risiGvqS~ 128 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFA--P--D--AEITMEA--NPGTVEADRFVGYQRAGVNRISIGVQSF 128 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCC--C--C--cEEEEEe--CcCcCCHHHHHHHHHcCCCEEEeccCcC
Confidence 467766664 57543 4444 3344454433211 1 1 2333333 4455533 35678889999999987777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHcCCcEEee
Q 006969 188 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 188 d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
+-.....+|+. ...+.+.++++.+++.|+..|.++...+ ...+.+.+.+.++.+.+.|++.|.+
T Consensus 129 ~~~~L~~l~r~--~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~ 193 (378)
T PRK05660 129 SEEKLKRLGRI--HGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSW 193 (378)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEe
Confidence 76666777764 2356677789999999986444443322 3467888999999999999998875
No 253
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.69 E-value=17 Score=39.10 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee---c-----CcccccCHHHHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI---P-----DTVGITMPTEFGKL 268 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l---~-----DTvG~~~P~~v~~l 268 (623)
...++.++.+....+ +.+.. |..+.- ..+++...++++.+.++|++.|-| | +..|...+..+.++
T Consensus 84 ~g~d~~~~~i~~~~~---~~~~p-vi~sI~---g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~ei 156 (334)
T PRK07565 84 VGPEEYLELIRRAKE---AVDIP-VIASLN---GSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDI 156 (334)
T ss_pred cCHHHHHHHHHHHHH---hcCCc-EEEEec---cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHH
Confidence 345555554443222 22332 444431 245567778999999999998877 3 33455555668899
Q ss_pred HHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 269 IADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 269 i~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
++.+++.+. +||.+-.=-+...-..-+.++.++|++.|..+
T Consensus 157 l~~v~~~~~----iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 157 LRAVKSAVS----IPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHhccC----CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 999998763 56777653333322333445668999999764
No 254
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.65 E-value=3.9 Score=43.19 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=78.4
Q ss_pred EcccC-CCCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH
Q 006969 223 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298 (623)
Q Consensus 223 f~~ed-a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 298 (623)
+.|-+ .++.|.+-+.++++.+++.|++.|.+.-|+| .++.+|-.++++.+.+...+ +++|-+|.=.+..-++.-
T Consensus 14 vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--~~pvi~gv~~~t~~ai~~ 91 (296)
T TIGR03249 14 VTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG--KVPVYTGVGGNTSDAIEI 91 (296)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCccHHHHHHH
Confidence 34543 3578999999999999999999999999988 45889999999988887765 355666653347777778
Q ss_pred HHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 299 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 299 slaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
+..|.++||+.+=. +...--+ .+-++++..++.
T Consensus 92 a~~a~~~Gadav~~-~pP~y~~---~s~~~i~~~f~~ 124 (296)
T TIGR03249 92 ARLAEKAGADGYLL-LPPYLIN---GEQEGLYAHVEA 124 (296)
T ss_pred HHHHHHhCCCEEEE-CCCCCCC---CCHHHHHHHHHH
Confidence 88899999999854 3333222 234555555443
No 255
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=87.64 E-value=32 Score=35.48 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=108.4
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEe---
Q 006969 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG--- 156 (623)
Q Consensus 80 v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~--- 156 (623)
+--+|-||=.|. ..+.++-.++.+...+.|++-+-+ .|... +...+..... .+++..+.+
T Consensus 20 ~~aiDh~~l~gp-----~~~~~~~~~~~~~a~~~~~~~v~~-~p~~~-------~~~~~~~~~~----~~~~~~~~~~~~ 82 (258)
T TIGR01949 20 IVPMDHGVSNGP-----IKGLVDIRKTVNEVAEGGADAVLL-HKGIV-------RRGHRGYGKD----VGLIIHLSASTS 82 (258)
T ss_pred EEECCCccccCC-----CCCcCCHHHHHHHHHhcCCCEEEe-Ccchh-------hhcccccCCC----CcEEEEEcCCCC
Confidence 334577765553 347778888999999999999988 34321 1111111000 112111200
Q ss_pred eccc-----chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc-C---
Q 006969 157 LSRC-----NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-D--- 227 (623)
Q Consensus 157 ~~r~-----~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e-d--- 227 (623)
+++. ....++.+++ .|++.|.+.....+ .+..+.++.+.+..+.+++.|.. +....+ +
T Consensus 83 ~g~~~~~~~~~~~v~~al~----~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~-liv~~~~~Gvh 149 (258)
T TIGR01949 83 LSPDPNDKRIVTTVEDAIR----MGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVP-LLAMMYPRGPH 149 (258)
T ss_pred CCCCCCcceeeeeHHHHHH----CCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCC-EEEEEeccCcc
Confidence 1111 1122444444 48888887665322 12346678888899999999976 322111 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEE-eecC--CcchHHHHHHHHHH
Q 006969 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST-HCQN--DLGLSTANTIAGAC 304 (623)
Q Consensus 228 a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~-H~HN--D~GlAvANslaAv~ 304 (623)
....+.+.+.+.++.+.++|||.|.+. .. ..++. ++.+.+..+ +|+-. =.-+ ++..++.|.-.+++
T Consensus 150 ~~~~~~~~~~~~~~~a~~~GADyikt~-~~--~~~~~----l~~~~~~~~----iPVva~GGi~~~~~~~~~~~i~~~~~ 218 (258)
T TIGR01949 150 IDDRDPELVAHAARLGAELGADIVKTP-YT--GDIDS----FRDVVKGCP----APVVVAGGPKTNSDREFLQMIKDAME 218 (258)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEecc-CC--CCHHH----HHHHHHhCC----CcEEEecCCCCCCHHHHHHHHHHHHH
Confidence 112456667777788889999999975 21 12333 334443322 22222 2233 67788999999999
Q ss_pred hCCCEEEe
Q 006969 305 AGARQVEV 312 (623)
Q Consensus 305 aGA~~Vd~ 312 (623)
+||+.+-.
T Consensus 219 aGa~Gia~ 226 (258)
T TIGR01949 219 AGAAGVAV 226 (258)
T ss_pred cCCcEEeh
Confidence 99996643
No 256
>PRK06852 aldolase; Validated
Probab=87.53 E-value=11 Score=40.24 Aligned_cols=199 Identities=12% Similarity=0.097 Sum_probs=111.6
Q ss_pred eCCCcccC-CCCCC--CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeeccc
Q 006969 84 DTTLRDGE-QSPGA--TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC 160 (623)
Q Consensus 84 DtTLRDG~-Q~~g~--~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 160 (623)
|=.+-.|. .+.+. ....++-..+++.+.+.|+|-|=+-. . .++.......+ ..+...+.+-+..
T Consensus 39 DHG~~~Gp~~~~~~~~~~gl~dp~~~i~~~~~~g~dav~~~~-----G---~l~~~~~~~~~-----~~lIlkl~~~t~l 105 (304)
T PRK06852 39 DQKIEHLNDDFYGEGIAKDDADPEHLFRIASKAKIGVFATQL-----G---LIARYGMDYPD-----VPYLVKLNSKTNL 105 (304)
T ss_pred cCCcccCCcccccccCCcccCCHHHHHHHHHhcCCCEEEeCH-----H---HHHhhccccCC-----CcEEEEECCCCCc
Confidence 55555555 22222 34556667788999999999887631 1 12211111000 0122222221111
Q ss_pred -----------chhhHHHHHHHHhc--CCCC--EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--
Q 006969 161 -----------NERDIKTAWEAVKY--AKRP--RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-- 223 (623)
Q Consensus 161 -----------~~~dI~~a~eal~~--a~~~--~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-- 223 (623)
.--+++.|++..+. .|++ .+++|.. |+ ...+.++.+.+.++.|++.|+..+..
T Consensus 106 ~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~---------~E~~ml~~l~~v~~ea~~~GlPll~~~y 175 (304)
T PRK06852 106 VKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SE---------YESEMLSEAAQIIYEAHKHGLIAVLWIY 175 (304)
T ss_pred CCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecC-CH---------HHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 11246666664211 1244 4566655 33 23567899999999999999974432
Q ss_pred --cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc--cccCHHHHHHHHHHHHHhCCCCcceeEEEeec-CCcchHHHH
Q 006969 224 --SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV--GITMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTAN 298 (623)
Q Consensus 224 --~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv--G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~H-ND~GlAvAN 298 (623)
++.-....+++++.-.++.+.+.|||.|-..=|. |-..|+.+.+.++..- ..| +.+.-=.. ++.. .+.-
T Consensus 176 prG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g-~vp----VviaGG~k~~~~e-~L~~ 249 (304)
T PRK06852 176 PRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAG-RTK----VVCAGGSSTDPEE-FLKQ 249 (304)
T ss_pred ccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCC-CCc----EEEeCCCCCCHHH-HHHH
Confidence 2211233578999999999999999998776542 2245788888776420 122 22221112 3322 4777
Q ss_pred HHHHHH-hCCCEEE
Q 006969 299 TIAGAC-AGARQVE 311 (623)
Q Consensus 299 slaAv~-aGA~~Vd 311 (623)
...|++ +||..|-
T Consensus 250 v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 250 LYEQIHISGASGNA 263 (304)
T ss_pred HHHHHHHcCCceee
Confidence 788888 9988773
No 257
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=87.51 E-value=5.6 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEe
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAG 121 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvG 121 (623)
+..+-++.++.|.++|++.||+-
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec
Confidence 34456788888999999999996
No 258
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=87.49 E-value=42 Score=35.51 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=120.7
Q ss_pred cccCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH--HHHHHHHHHHhccccccCCCccceEEeeccc
Q 006969 88 RDGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC 160 (623)
Q Consensus 88 RDG~Q~~g--~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 160 (623)
|.+.++-+ ..++.+.-..+.+.-.+.+.+.|=--+|... +.+ ...++.+++.. -+|...=|=-+
T Consensus 14 ~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~---------~VPValHLDH~ 84 (284)
T PRK12737 14 QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKY---------NIPLALHLDHH 84 (284)
T ss_pred HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCC
Confidence 34444443 2467899999999999999997755455332 112 13344455432 13433333222
Q ss_pred -chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC-----
Q 006969 161 -NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA----- 228 (623)
Q Consensus 161 -~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda----- 228 (623)
..+.|.+|+++ |...|.+ . .| ..+.+||++..++.+++|+..|.. |+- +.||.
T Consensus 85 ~~~e~i~~ai~~----GftSVMi-D-gS--------~lp~eeNi~~T~~vv~~Ah~~gvs-VEaElG~igg~e~~~~~~~ 149 (284)
T PRK12737 85 EDLDDIKKKVRA----GIRSVMI-D-GS--------HLSFEENIAIVKEVVEFCHRYDAS-VEAELGRLGGQEDDLVVDE 149 (284)
T ss_pred CCHHHHHHHHHc----CCCeEEe-c-CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeeccCccCCccccc
Confidence 24556666664 8887644 2 22 247899999999999999999984 532 22232
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCcEEeec--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 006969 229 ---GRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (623)
Q Consensus 229 ---~r~d~e~l~~~~~~~~~aGa~~I~l~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 301 (623)
..|+|+...+++++ -|+|.+-++ -.=|.- .|.-=.++++.+++.++ +||.+|. ..|+.--.-..
T Consensus 150 ~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~----iPLVlHG--gSG~~~e~~~k 220 (284)
T PRK12737 150 KDAMYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS----IPLVLHG--ASGVPDEDVKK 220 (284)
T ss_pred ccccCCCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHHH
Confidence 26799988887765 588865553 122222 45444567888888763 6787665 56677778888
Q ss_pred HHHhCCCEEEe
Q 006969 302 GACAGARQVEV 312 (623)
Q Consensus 302 Av~aGA~~Vd~ 312 (623)
|++.|+.-|+.
T Consensus 221 ai~~Gi~KiNi 231 (284)
T PRK12737 221 AISLGICKVNV 231 (284)
T ss_pred HHHCCCeEEEe
Confidence 99999888743
No 259
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=87.44 E-value=10 Score=40.14 Aligned_cols=205 Identities=19% Similarity=0.182 Sum_probs=117.2
Q ss_pred HHHHhHcCCCEEEEe---------cCCCC----hhHHHHHHHHHHHhccccccCCCccceEE----eecccchhhHHHHH
Q 006969 107 ARQLAKLGVDIIEAG---------FPAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 169 (623)
Q Consensus 107 a~~L~~~Gvd~IEvG---------fP~~s----~~d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 169 (623)
++...++|++.|=++ +|-.+ .+-.+.+++|.+... .|.+. |++ +...+.+.+
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~---------iPviaD~d~GyG--~~~~v~~tv 94 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTD---------LPLLVDADTGFG--EAFNVARTV 94 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCC--CHHHHHHHH
Confidence 455667788887663 34311 122466666665432 13333 233 356677777
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIK 245 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~ 245 (623)
+.+..+|+..|+|-..+++-++-+.-+ .+.++.+++++.+++..+ +.+.+...=-|+ .....+..++=+++..+
T Consensus 95 ~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~~~~g~deAI~Ra~ay~~ 172 (285)
T TIGR02317 95 REMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFVIIARTDARAVEGLDAAIERAKAYVE 172 (285)
T ss_pred HHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEEEEEEcCcccccCHHHHHHHHHHHHH
Confidence 777788999999988776532211112 367888887776654433 233222211122 22346777777888899
Q ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCccc
Q 006969 246 VGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNAS 325 (623)
Q Consensus 246 aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~ 325 (623)
+|||.|.++ |..+++++.++.+.+. .| +.+-+-..+..++= +.-.--+.|+++|-....+ =|+-+..
T Consensus 173 AGAD~vfi~---g~~~~e~i~~~~~~i~--~P----l~~n~~~~~~~p~~--s~~eL~~lGv~~v~~~~~~--~~aa~~a 239 (285)
T TIGR02317 173 AGADMIFPE---ALTSLEEFRQFAKAVK--VP----LLANMTEFGKTPLF--TADELREAGYKMVIYPVTA--FRAMNKA 239 (285)
T ss_pred cCCCEEEeC---CCCCHHHHHHHHHhcC--CC----EEEEeccCCCCCCC--CHHHHHHcCCcEEEEchHH--HHHHHHH
Confidence 999999995 5667887776666542 22 22233322221111 2334556699988544333 3566667
Q ss_pred HHHHHHHHHhcc
Q 006969 326 LEEVVMAFKCRG 337 (623)
Q Consensus 326 lEevv~~L~~~~ 337 (623)
+++.+..|...|
T Consensus 240 ~~~~~~~l~~~g 251 (285)
T TIGR02317 240 AEAVYNEIKEHG 251 (285)
T ss_pred HHHHHHHHHHcC
Confidence 777777776544
No 260
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=87.36 E-value=4.1 Score=42.80 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHH
Q 006969 228 AGRSDRKFLYEILGEVIKV-GATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAG 302 (623)
Q Consensus 228 a~r~d~e~l~~~~~~~~~a-Ga~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaA 302 (623)
.+..|.+-+.+.++.+.+. |++.|.++-|+| .++.+|-.++++.+.+...+ +++|-+++ +++.--++..+..|
T Consensus 15 dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~--~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 15 NGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG--KVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCeEEeccCCCCHHHHHHHHHHH
Confidence 3578999999999999999 999999999988 45788888999988887765 47788877 78888899999999
Q ss_pred HHhCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 303 ACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 303 v~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
.++||+.|=..---. -+ .+-++++..++
T Consensus 93 ~~~Gad~v~~~~P~y-~~---~~~~~i~~~~~ 120 (288)
T cd00954 93 EELGYDAISAITPFY-YK---FSFEEIKDYYR 120 (288)
T ss_pred HHcCCCEEEEeCCCC-CC---CCHHHHHHHHH
Confidence 999999986543322 12 23455555444
No 261
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=87.23 E-value=46 Score=35.65 Aligned_cols=165 Identities=16% Similarity=0.091 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChh-HH----HHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-DF----EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+++.-.+++.+.|=-.+|..... .. ..++.+++... -+|...=|--+ ..+.+.+|++
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~--------~VPValHLDHg~~~e~i~~ai~ 95 (307)
T PRK05835 24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYP--------HIPVALHLDHGTTFESCEKAVK 95 (307)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcC--------CCeEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999886656543221 11 33344444311 12433333222 3445555555
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC--------CCCCHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFL 236 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda--------~r~d~e~l 236 (623)
+ |...|.+=.| ..+.|||++..++.+++|+..|.. |+- +.||. ..|||+..
T Consensus 96 ~----GftSVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~~~~TdPeeA 160 (307)
T PRK05835 96 A----GFTSVMIDAS----------HHAFEENLELTSKVVKMAHNAGVS-VEAELGRLMGIEDNISVDEKDAVLVNPKEA 160 (307)
T ss_pred c----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEecccCCccCCcccccccccCCCHHHH
Confidence 4 8887754322 246789999999999999999974 532 22222 26788888
Q ss_pred HHHHHHHHHcCCcEEeec--Cccccc----CHHHHHHHHHHHHHhCCCCcceeEEEeecCC
Q 006969 237 YEILGEVIKVGATTLNIP--DTVGIT----MPTEFGKLIADIKANTPGIENVVISTHCQND 291 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~--DTvG~~----~P~~v~~li~~l~~~~~~~~~v~i~~H~HND 291 (623)
.++++ +-|+|.+-++ -.=|.. .|.-=.++++.+++.+ ++||.+|.=..
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~----~iPLVLHGgSG 214 (307)
T PRK05835 161 EQFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT----NIPLVLHGASA 214 (307)
T ss_pred HHHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh----CCCEEEeCCCC
Confidence 77765 4588864443 233332 2444456778888876 37899887544
No 262
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=87.16 E-value=11 Score=40.49 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceE--------Eeecccch------hh
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI--------CGLSRCNE------RD 164 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i--------~~~~r~~~------~d 164 (623)
..+.-++=++.|.++|.+.+=+..| ..++.+.++.|.+...-.+..|.-+-..+ +.--|-|+ +-
T Consensus 32 Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~ 109 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRER 109 (346)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHH
Confidence 4555666678899999999999887 35667778877764322111110110000 00012222 22
Q ss_pred HHHHHHHHhcCCCC-EEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHH
Q 006969 165 IKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 242 (623)
Q Consensus 165 I~~a~eal~~a~~~-~v~i~~~~Sd~h~~~~l~-~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~ 242 (623)
++.-+++.++.+++ ||.+-..+-+-++..+++ -+.+..++-+.+.++.+.++|+.++.+|.- -+|+....+..+.
T Consensus 110 v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K---sSdv~~~i~ayr~ 186 (346)
T TIGR00612 110 VRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK---ASDVAETVAAYRL 186 (346)
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHHH
Confidence 34445555666777 677765555567777887 488999999999999999999987888773 3454445454444
Q ss_pred HH
Q 006969 243 VI 244 (623)
Q Consensus 243 ~~ 244 (623)
+.
T Consensus 187 la 188 (346)
T TIGR00612 187 LA 188 (346)
T ss_pred HH
Confidence 43
No 263
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=87.12 E-value=15 Score=39.33 Aligned_cols=165 Identities=19% Similarity=0.286 Sum_probs=100.9
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcC-CCEEEEec-CCCChhHHHHHHHHHHHhccccccCCCccceEEe
Q 006969 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLG-VDIIEAGF-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (623)
Q Consensus 79 ~v~I~DtTLRDG~Q~~g~~~t~e~Kl~Ia~~L~~~G-vd~IEvGf-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 156 (623)
.|+|+-. |.--...-++.+....|++.|.+.+ |..+=+-+ |--- +-|.++++.+.+.+. .+-.-.|
T Consensus 103 ~vkIFTS----GSFLD~~EVP~e~R~~Il~~is~~~~v~~vvvESRpE~I--~eE~l~e~~~il~gk------~~EvaIG 170 (358)
T COG1244 103 VVKIFTS----GSFLDPEEVPREARRYILERISENDNVKEVVVESRPEFI--REERLEEITEILEGK------IVEVAIG 170 (358)
T ss_pred eEEEEcc----cccCChhhCCHHHHHHHHHHHhhccceeEEEeecCchhc--CHHHHHHHHHhhCCc------eEEEEEe
Confidence 4888744 4433345678889999999999886 77665543 2111 236677777654322 1122345
Q ss_pred ecccch-------------hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 006969 157 LSRCNE-------------RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF 223 (623)
Q Consensus 157 ~~r~~~-------------~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f 223 (623)
|.-++. +|+.+|.+.++..|+. +..|+-.-++++ |..|.++.+..+++ +.+-|++.|.+
T Consensus 171 LETanD~ire~sINKGftF~df~~A~~~ir~~g~~-vktYlllKP~Fl------SE~eAI~D~i~Si~-~~~~~~d~iSi 242 (358)
T COG1244 171 LETANDKIREDSINKGFTFEDFVRAAEIIRNYGAK-VKTYLLLKPPFL------SEKEAIEDVISSIV-AAKPGTDTISI 242 (358)
T ss_pred cccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCc-eeEEEEeccccc------ChHHHHHHHHHHHH-HhccCCCeEEe
Confidence 554443 3566777778877765 333433334443 66788888888888 55566777888
Q ss_pred cccCCCC------------CCHHHHH---HHHHHHHHcCCcEEeecCcccccCHH
Q 006969 224 SPEDAGR------------SDRKFLY---EILGEVIKVGATTLNIPDTVGITMPT 263 (623)
Q Consensus 224 ~~eda~r------------~d~e~l~---~~~~~~~~aGa~~I~l~DTvG~~~P~ 263 (623)
+|-...+ ..|-+|. ++++.+.+.++....++|++|...+.
T Consensus 243 nptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~~~i~sdp~G~gs~R 297 (358)
T COG1244 243 NPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPMLRILSDPVGAGSDR 297 (358)
T ss_pred cccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCCCceeecCCCCCCCC
Confidence 7753222 3334444 45555555677778888999976543
No 264
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.09 E-value=2.9 Score=46.26 Aligned_cols=73 Identities=25% Similarity=0.322 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccC
Q 006969 236 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 315 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~ 315 (623)
..+.+++++++|+|.|.| |+.. ..+..+.++|+.+++.+|+. .|-+. | -.-...+..++++||+.|-+
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~---~vi~g--~--V~T~e~a~~l~~aGaD~I~v--- 221 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNL---DLIAG--N--IVTKEAALDLISVGADCLKV--- 221 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCC---cEEEE--e--cCCHHHHHHHHHcCCCEEEE---
Confidence 557888999999999998 6665 33788999999999999863 33322 1 12255778899999999983
Q ss_pred CccCc
Q 006969 316 GIGER 320 (623)
Q Consensus 316 GlGER 320 (623)
|+|..
T Consensus 222 G~g~G 226 (404)
T PRK06843 222 GIGPG 226 (404)
T ss_pred CCCCC
Confidence 66653
No 265
>TIGR03586 PseI pseudaminic acid synthase.
Probab=86.91 E-value=3.8 Score=44.10 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee--cCcccccCHHHHHHH--HHHHHHhCCCCccee
Q 006969 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PDTVGITMPTEFGKL--IADIKANTPGIENVV 283 (623)
Q Consensus 208 ~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l--~DTvG~~~P~~v~~l--i~~l~~~~~~~~~v~ 283 (623)
..++++.+.|.. |.++- +.++.+.+...++.+.+.|...|.| | +.++-+|.+...| |..+++.++ ++
T Consensus 125 ~LL~~va~~gkP-vilst---G~~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~----~p 195 (327)
T TIGR03586 125 PLIRYVAKTGKP-IIMST---GIATLEEIQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN----VP 195 (327)
T ss_pred HHHHHHHhcCCc-EEEEC---CCCCHHHHHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC----CC
Confidence 345555667875 77764 2368888888888888899876777 7 7777777766544 778888873 56
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 284 ISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 284 i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
||+=-|- .+..-+++|+.+||+.|+.=
T Consensus 196 VG~SDHt---~G~~~~~aAva~GA~iIEkH 222 (327)
T TIGR03586 196 VGLSDHT---LGILAPVAAVALGACVIEKH 222 (327)
T ss_pred EEeeCCC---CchHHHHHHHHcCCCEEEeC
Confidence 8775453 34688899999999998753
No 266
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=86.81 E-value=8.4 Score=40.03 Aligned_cols=138 Identities=18% Similarity=0.213 Sum_probs=81.8
Q ss_pred HHHHHHhHcCCCEEEEec---------CCCChhH----HHHHHHHHHHhccccccCCCccceEEee--cc---cchhhHH
Q 006969 105 DIARQLAKLGVDIIEAGF---------PAASKED----FEAVRTIAKEVGNAVDAESGYVPVICGL--SR---CNERDIK 166 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGf---------P~~s~~d----~e~v~~i~~~~~~~~~~~~~l~~~i~~~--~r---~~~~dI~ 166 (623)
--++.++++|||.|=+|+ |...+-. ...++.+++-.+.. ..+..+ +- ..++-++
T Consensus 23 ~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p--------~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 23 PTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRA--------LVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCC--------eEEEeCCCCcccCCHHHHHH
Confidence 357888999999998874 3222212 34444555432211 123322 21 1222356
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----Eccc---------CCCCCC-
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE---------DAGRSD- 232 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~----f~~e---------da~r~d- 232 (623)
.+.+.++.+|+..|++-.. ....+.|+.+++.|+. |+ +.|- -.+|++
T Consensus 95 ~a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agip-V~gHiGL~pq~~~~~gg~~~~grt~~ 155 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIP-VMGHIGLTPQSVNQLGGYKVQGKTEE 155 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCC-eeccccccceeeeccCCceeccCCHH
Confidence 6677777789999887543 1345677777888875 33 1221 124565
Q ss_pred -HHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCC
Q 006969 233 -RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (623)
Q Consensus 233 -~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~ 277 (623)
.+.+++-++++.++||+.|.+.= .|. ++++.+.++++
T Consensus 156 ~a~~~i~ra~a~~~AGA~~i~lE~-----v~~---~~~~~i~~~v~ 193 (254)
T cd06557 156 EAERLLEDALALEEAGAFALVLEC-----VPA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCC
Confidence 57788888889999999999862 243 35566666654
No 267
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=86.70 E-value=14 Score=40.43 Aligned_cols=131 Identities=12% Similarity=0.073 Sum_probs=80.8
Q ss_pred HHhcCCCCEEEEEecC----------CHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC--eEEEcccC-----CCCCC
Q 006969 171 AVKYAKRPRIHTFIAT----------SGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCD--DVEFSPED-----AGRSD 232 (623)
Q Consensus 171 al~~a~~~~v~i~~~~----------Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~--~V~f~~ed-----a~r~d 232 (623)
..+.+|.+.|.|-.+- .-.++...+|=|.|.=.+.+.+.++..|+. |-+ -|.+++++ ..-.+
T Consensus 167 rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~ 246 (362)
T PRK10605 167 NAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN 246 (362)
T ss_pred HHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence 3456899998774332 222444556778888788888888887764 222 24567753 11245
Q ss_pred HHH-HHHHHHHHHHcCCcEEeecCccccc-CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC-CCE
Q 006969 233 RKF-LYEILGEVIKVGATTLNIPDTVGIT-MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG-ARQ 309 (623)
Q Consensus 233 ~e~-l~~~~~~~~~aGa~~I~l~DTvG~~-~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG-A~~ 309 (623)
++. .+++++.+.+.|+|.|.+..-- +. .+.-...+.+.+|+.++ ++|..-.-++ ...+..+++.| ||.
T Consensus 247 ~~e~~~~~~~~L~~~giD~i~vs~~~-~~~~~~~~~~~~~~ik~~~~----~pv~~~G~~~----~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 247 EEADALYLIEQLGKRGIAYLHMSEPD-WAGGEPYSDAFREKVRARFH----GVIIGAGAYT----AEKAETLIGKGLIDA 317 (362)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccc-ccCCccccHHHHHHHHHHCC----CCEEEeCCCC----HHHHHHHHHcCCCCE
Confidence 566 6899999999999999886420 11 01112234566777775 3444444333 56788899888 665
Q ss_pred E
Q 006969 310 V 310 (623)
Q Consensus 310 V 310 (623)
|
T Consensus 318 V 318 (362)
T PRK10605 318 V 318 (362)
T ss_pred E
Confidence 5
No 268
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=86.69 E-value=4.8 Score=42.18 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHHH
Q 006969 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGA 303 (623)
Q Consensus 228 a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaAv 303 (623)
.++.|.+-+.+.++.+++.|++.|.++-|+|= ++.+|-.++++.+.+...+ +++|-+|. +++.--++.-+..|.
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG--RVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEeCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999999884 5788888899888887765 46666665 667788899999999
Q ss_pred HhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 304 ~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
++||+.|=..---+. + .+-++++..++.
T Consensus 91 ~~Gad~v~v~pP~y~-~---~~~~~i~~~~~~ 118 (285)
T TIGR00674 91 DVGADGFLVVTPYYN-K---PTQEGLYQHFKA 118 (285)
T ss_pred HcCCCEEEEcCCcCC-C---CCHHHHHHHHHH
Confidence 999999877654332 1 234566555543
No 269
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.69 E-value=5 Score=41.70 Aligned_cols=101 Identities=23% Similarity=0.211 Sum_probs=76.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEeec-CCcchHHHHHHHHH
Q 006969 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTANTIAGA 303 (623)
Q Consensus 228 a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~H-ND~GlAvANslaAv 303 (623)
.+..|.+-+.+.++.+.+.|++.|.++-|+| .++.+|-.++++.+++...+ +++|-+|.- ++.--++.-+..|-
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG--RVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEecCCccHHHHHHHHHHHH
Confidence 3478999999999999999999999999999 45789999999999888764 466777764 34555777888899
Q ss_pred HhCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 304 CAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 304 ~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
++||+.|-..---+-. .+-++++..+.
T Consensus 90 ~~Gad~v~v~pP~y~~----~~~~~~~~~~~ 116 (281)
T cd00408 90 EAGADGVLVVPPYYNK----PSQEGIVAHFK 116 (281)
T ss_pred HcCCCEEEECCCcCCC----CCHHHHHHHHH
Confidence 9999998775544332 23455555444
No 270
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=86.67 E-value=4.4 Score=42.68 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=83.8
Q ss_pred EEcccC-CCCCCHHHHHHHHHHHHH-cCCcEEeecCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchH
Q 006969 222 EFSPED-AGRSDRKFLYEILGEVIK-VGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLS 295 (623)
Q Consensus 222 ~f~~ed-a~r~d~e~l~~~~~~~~~-aGa~~I~l~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlA 295 (623)
...|-+ .++.|.+-+.+.++.+++ .|++.|.++-|+|= ++.+|-.++++.+.+..++ +++|-++. +++.--+
T Consensus 11 ~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~--~~~viagvg~~~t~~a 88 (293)
T PRK04147 11 LLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG--KVKLIAQVGSVNTAEA 88 (293)
T ss_pred eECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC--CCCEEecCCCCCHHHH
Confidence 345543 457899999999999999 99999999999885 6889999999999888765 47788887 7888999
Q ss_pred HHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 296 TANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 296 vANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
+..+..|.++||+.|=+.---+ -+ .+-++++..++.
T Consensus 89 i~~a~~a~~~Gad~v~v~~P~y-~~---~~~~~l~~~f~~ 124 (293)
T PRK04147 89 QELAKYATELGYDAISAVTPFY-YP---FSFEEICDYYRE 124 (293)
T ss_pred HHHHHHHHHcCCCEEEEeCCcC-CC---CCHHHHHHHHHH
Confidence 9999999999999987654332 11 233555554443
No 271
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=86.63 E-value=4.6 Score=42.67 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=81.0
Q ss_pred EcccC-CCCCCHHHHHHHHHHHHHcCCcEEeecCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHH
Q 006969 223 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTA 297 (623)
Q Consensus 223 f~~ed-a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvA 297 (623)
+.|-+ .++.|.+-+.+.++.+++.|++.|.++-|.|= ++-+|-.++++.+.+...+ +++|-+|. +++.--++.
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~~~t~~ai~ 86 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGALNHDETLE 86 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCcchHHHHHH
Confidence 45543 35789999999999999999999999999984 5778888888888887765 46777766 788888999
Q ss_pred HHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 298 NslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
.+..|.++||+.|=..---+- . .+-++++..++
T Consensus 87 ~a~~A~~~Gad~v~v~pP~y~-~---~~~~~l~~~f~ 119 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIVPYYN-K---PNQEALYDHFA 119 (294)
T ss_pred HHHHHHHcCCCEEEEcCccCC-C---CCHHHHHHHHH
Confidence 999999999999866543321 1 23355555443
No 272
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=86.59 E-value=14 Score=40.26 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=64.1
Q ss_pred chhhHH-HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHH
Q 006969 161 NERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 238 (623)
Q Consensus 161 ~~~dI~-~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~ 238 (623)
++..+. .-++.++.+|+.+|++-+-+.+-...+.+|+.. ..+.+.++++.+++.|+..|.++...+ ..-+.+.+.+
T Consensus 102 ~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~--s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~ 179 (375)
T PRK05628 102 NPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTH--TPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRA 179 (375)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHH
Confidence 444443 235667778999999987776667777777642 234566788899999986465554432 3456788889
Q ss_pred HHHHHHHcCCcEEee
Q 006969 239 ILGEVIKVGATTLNI 253 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l 253 (623)
.++.+.+.|++.|.+
T Consensus 180 tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 180 SLDAALEAGVDHVSA 194 (375)
T ss_pred HHHHHHhcCCCEEEe
Confidence 999999999988865
No 273
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=86.57 E-value=17 Score=39.38 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=73.7
Q ss_pred ceEEeeccc-chhhHHHHHHHHhcCCCCEEEEEec-CCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH-cCCCeEEEcccC
Q 006969 152 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-TSGIHMEHKL-RKTKQQVVEIARSMVKFARS-LGCDDVEFSPED 227 (623)
Q Consensus 152 ~~i~~~~r~-~~~dI~~a~eal~~a~~~~v~i~~~-~Sd~h~~~~l-~~t~ee~l~~~~~~v~~ak~-~G~~~V~f~~ed 227 (623)
|.+.--+.+ ..+++..|.+.+...|.+.|++.-- ++. + +.+++ .++ ..++...|+ .++. |.+.+ +
T Consensus 202 PViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~t------f~~~~~~-~ld--l~ai~~lk~~~~lP-Vi~d~-s 270 (335)
T PRK08673 202 PVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRT------FETATRN-TLD--LSAVPVIKKLTHLP-VIVDP-S 270 (335)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC------CCCcChh-hhh--HHHHHHHHHhcCCC-EEEeC-C
Confidence 444433333 6778888888888788887776532 211 1 11111 122 234455555 3665 65655 3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEE----------eecCcccccCHHHHHHHHHHHHHh
Q 006969 228 AGRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 228 a~r~d~e~l~~~~~~~~~aGa~~I----------~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
=+--..+++..++.+++.+||+.+ .++|--=.++|.++.++++.+++.
T Consensus 271 H~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i 328 (335)
T PRK08673 271 HATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAI 328 (335)
T ss_pred CCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHH
Confidence 334455788899999999999833 357989999999999999999864
No 274
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=86.54 E-value=18 Score=38.96 Aligned_cols=148 Identities=14% Similarity=0.171 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEec---------CCCChhHH----HHHHHHHHHhccccccCCCccceEEe-----e
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGF---------PAASKEDF----EAVRTIAKEVGNAVDAESGYVPVICG-----L 157 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---------P~~s~~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~-----~ 157 (623)
+.|.+.--...++.++++|||.|=+|. +...+-.+ .-++.+++-..+. ..++. +
T Consensus 37 ivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a--------~vVaDmPfgSY 108 (332)
T PLN02424 37 ITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRP--------LLVGDLPFGSY 108 (332)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCC--------EEEeCCCCCCC
Confidence 344444446679999999999999973 33333223 2333333322211 11111 2
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----Eccc-----CC
Q 006969 158 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE-----DA 228 (623)
Q Consensus 158 ~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~----f~~e-----da 228 (623)
....++-++.+.+.++++|++.|.+-... ....+.|+.+.+.|+. |+ +.|. -+
T Consensus 109 ~~s~e~av~nA~rl~~eaGa~aVKlEGg~-----------------~~~~~~I~~l~~~GIP-V~gHiGLtPQs~~~lGG 170 (332)
T PLN02424 109 ESSTDQAVESAVRMLKEGGMDAVKLEGGS-----------------PSRVTAAKAIVEAGIA-VMGHVGLTPQAISVLGG 170 (332)
T ss_pred CCCHHHHHHHHHHHHHHhCCcEEEECCCc-----------------HHHHHHHHHHHHcCCC-EEEeecccceeehhhcC
Confidence 22233445556666678899998875442 1223567777788987 55 4443 11
Q ss_pred ----CCC--CHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCC
Q 006969 229 ----GRS--DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (623)
Q Consensus 229 ----~r~--d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~ 277 (623)
+++ ..+.+++-++++.++||..|.|. +.|.+ +.+.+.+.++
T Consensus 171 ykvqGr~~~~a~~li~dA~ale~AGAf~ivLE-----~Vp~~---la~~It~~l~ 217 (332)
T PLN02424 171 FRPQGRTAESAVKVVETALALQEAGCFAVVLE-----CVPAP---VAAAITSALQ 217 (332)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEEc-----CCcHH---HHHHHHHhCC
Confidence 122 23477778888999999999986 56666 4445555553
No 275
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=86.37 E-value=11 Score=40.95 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC-CCCHHHHHHHHHHHHHc
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKV 246 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~-r~d~e~l~~~~~~~~~a 246 (623)
-++.++.+|+.+|.+-+-+.+-.....+|+.. ..+.+.++++.+++.|++.|.++...+- ..+.+.+.+.++.+.+.
T Consensus 101 ~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l 178 (374)
T PRK05799 101 KLKILKSMGVNRLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVEL 178 (374)
T ss_pred HHHHHHHcCCCEEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhc
Confidence 35667778999999877666656666777632 2456677889999999864555443332 45778888999999999
Q ss_pred CCcEEee
Q 006969 247 GATTLNI 253 (623)
Q Consensus 247 Ga~~I~l 253 (623)
|++.|.+
T Consensus 179 ~~~~is~ 185 (374)
T PRK05799 179 NPEHISC 185 (374)
T ss_pred CCCEEEE
Confidence 9988766
No 276
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=86.25 E-value=13 Score=40.41 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=72.1
Q ss_pred ceEEeeccc-chhhHHHHHHHHhcCCCCEEEEEec-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEc
Q 006969 152 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-----TSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFS 224 (623)
Q Consensus 152 ~~i~~~~r~-~~~dI~~a~eal~~a~~~~v~i~~~-----~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~ 224 (623)
|.+.--+.+ ..+++..|++.+...|.+.|.+.-- .|... +-+ ++ ..++...|+. ++. |.|+
T Consensus 210 PVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~-----~~~----~d--l~ai~~lk~~~~lP-Vi~D 277 (352)
T PRK13396 210 PVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYT-----RNT----LD--LSVIPVLRSLTHLP-IMID 277 (352)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCC-----CCC----cC--HHHHHHHHHhhCCC-EEEC
Confidence 445444444 6788999999888778776655422 11111 011 11 1344444554 675 8887
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCcEE----------eecCcccccCHHHHHHHHHHHHHh
Q 006969 225 PEDAGRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 225 ~eda~r~d~e~l~~~~~~~~~aGa~~I----------~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
|--+. -..+++..++.+++.+||+.+ .++|-.=.++|.++.++++.+++.
T Consensus 278 psH~~-G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i 337 (352)
T PRK13396 278 PSHGT-GKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVI 337 (352)
T ss_pred CcccC-CcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHH
Confidence 74222 234667789999999999943 357889999999999999998874
No 277
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=86.24 E-value=45 Score=34.63 Aligned_cols=199 Identities=16% Similarity=0.141 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEE---eec-----ccchhhHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC---GLS-----RCNERDIKTA 168 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~---~~~-----r~~~~dI~~a 168 (623)
..+.++-.++.+...+.|++-+-+- |. .++...+.+.. ..++...+. ++. +.....++.+
T Consensus 35 ~~~~~d~~~~~~~a~~~~~~av~v~-~~-------~~~~~~~~~~~----~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A 102 (267)
T PRK07226 35 IDGLVDIRDTVNKVAEGGADAVLMH-KG-------LARHGHRGYGR----DVGLIVHLSASTSLSPDPNDKVLVGTVEEA 102 (267)
T ss_pred CcCcCCHHHHHHHHHhcCCCEEEeC-Hh-------HHhhhccccCC----CCcEEEEEcCCCCCCCCCCcceeeecHHHH
Confidence 3477788889999999999999882 32 12221111110 012222222 121 1122234555
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-c-----ccCCCCCCHHHHHHHHHH
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-S-----PEDAGRSDRKFLYEILGE 242 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~-----~eda~r~d~e~l~~~~~~ 242 (623)
++ .|++.|.+....... ..++.++.+.+.++.+++.|+..+.. . .|+ ..+++.+...++.
T Consensus 103 ~~----~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~--~~~~~~i~~a~~~ 168 (267)
T PRK07226 103 IK----LGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKN--EYDPEVVAHAARV 168 (267)
T ss_pred HH----cCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCC--CccHHHHHHHHHH
Confidence 44 488877776554321 14567888899999999999862221 1 122 2467788888899
Q ss_pred HHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecC--CcchHHHHHHHHHHhCCCEEEeccCCccCc
Q 006969 243 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQN--DLGLSTANTIAGACAGARQVEVTINGIGER 320 (623)
Q Consensus 243 ~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HN--D~GlAvANslaAv~aGA~~Vd~Tv~GlGER 320 (623)
+.++|||.|-..=+ | .+ ++++.+.+..+ ++ +... =+-+ |+-.++++...++++||+.+-..-+=+.
T Consensus 169 a~e~GAD~vKt~~~-~--~~----~~l~~~~~~~~-ip-V~a~-GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~-- 236 (267)
T PRK07226 169 AAELGADIVKTNYT-G--DP----ESFREVVEGCP-VP-VVIA-GGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ-- 236 (267)
T ss_pred HHHHCCCEEeeCCC-C--CH----HHHHHHHHhCC-CC-EEEE-eCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc--
Confidence 99999999966511 1 12 34444443221 11 2111 1233 5667899999999999995533322221
Q ss_pred cCcccHHHHHHHHHh
Q 006969 321 AGNASLEEVVMAFKC 335 (623)
Q Consensus 321 aGNa~lEevv~~L~~ 335 (623)
. .+.++.+..|..
T Consensus 237 ~--~~p~~~~~~l~~ 249 (267)
T PRK07226 237 H--EDPEAITRAISA 249 (267)
T ss_pred C--CCHHHHHHHHHH
Confidence 1 234555555554
No 278
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=86.14 E-value=16 Score=37.06 Aligned_cols=176 Identities=20% Similarity=0.224 Sum_probs=107.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcC
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 175 (623)
.+|+.+....|++.-..-|.++|++. ..| +.++.+... .+ + | ||+-+ -.++.+-.+.++
T Consensus 22 nNFd~~~V~~i~~AA~~ggAt~vDIA---adp---~LV~~~~~~-s~-------l-P-ICVSa-Vep~~f~~aV~A---- 80 (242)
T PF04481_consen 22 NNFDAESVAAIVKAAEIGGATFVDIA---ADP---ELVKLAKSL-SN-------L-P-ICVSA-VEPELFVAAVKA---- 80 (242)
T ss_pred cccCHHHHHHHHHHHHccCCceEEec---CCH---HHHHHHHHh-CC-------C-C-eEeec-CCHHHHHHHHHh----
Confidence 47999999999999999999999994 344 355544432 11 1 3 44422 234445455554
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecC
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD 255 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~D 255 (623)
|.+.|.| ...|.+-......+-+|+++..++. |++ +..+..+-.--.-.+.+.=.+++..+.++|+|.|-
T Consensus 81 GAdliEI--GNfDsFY~qGr~f~a~eVL~Lt~~t----R~L-LP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQ--- 150 (242)
T PF04481_consen 81 GADLIEI--GNFDSFYAQGRRFSAEEVLALTRET----RSL-LPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQ--- 150 (242)
T ss_pred CCCEEEe--cchHHHHhcCCeecHHHHHHHHHHH----HHh-CCCCceEEecCccccHHHHHHHHHHHHHhCCcEEE---
Confidence 8888765 5556565555566778877755544 554 33233322112235667778999999999999886
Q ss_pred cccccCHHH----HHHHHHH----------HHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 256 TVGITMPTE----FGKLIAD----------IKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 256 TvG~~~P~~----v~~li~~----------l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
|-|...-.. +-.+|+. +.+.+ ++|+- .-.|+.--.+=.|+.+||..|
T Consensus 151 TEGgtss~p~~~g~lglIekaapTLAaay~ISr~v----~iPVl----cASGlS~vT~PmAiaaGAsGV 211 (242)
T PF04481_consen 151 TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV----SIPVL----CASGLSAVTAPMAIAAGASGV 211 (242)
T ss_pred cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc----CCceE----eccCcchhhHHHHHHcCCccc
Confidence 555543221 2222222 22222 23432 236777777889999999876
No 279
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=85.94 E-value=20 Score=37.99 Aligned_cols=196 Identities=17% Similarity=0.254 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhh-HHHHHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAWE 170 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~e 170 (623)
++.+.-.++++.|.+.|++-|=+ | ||.-+.+|. +.++...+..+ +.+|.|+|.+-.+-++ |+.+ +
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~-------grvpviaG~g~~~t~eai~la-k 93 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG-------GRVPVIAGVGSNSTAEAIELA-K 93 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHC-------CCCcEEEecCCCcHHHHHHHH-H
Confidence 68888899999999999997755 4 466666665 44455555432 3457888877554433 4444 3
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
..+..|++.|-+..|-. .+-+.++..+-....++.+ ++ ..+-|+... |+..+...+.+.++.+ -...
T Consensus 94 ~a~~~Gad~il~v~PyY-------~k~~~~gl~~hf~~ia~a~-~l--PvilYN~P~--~tg~~l~~e~i~~la~-~~ni 160 (299)
T COG0329 94 HAEKLGADGILVVPPYY-------NKPSQEGLYAHFKAIAEAV-DL--PVILYNIPS--RTGVDLSPETIARLAE-HPNI 160 (299)
T ss_pred HHHhcCCCEEEEeCCCC-------cCCChHHHHHHHHHHHHhc-CC--CEEEEeCcc--ccCCCCCHHHHHHHhc-CCCE
Confidence 34567999887665532 2445666666666555555 44 435665322 3333344455555555 6689
Q ss_pred EeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHH
Q 006969 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVV 330 (623)
Q Consensus 251 I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv 330 (623)
+.+.|+.|- +.. +..++...+..+ -+.+=+.++ -.+.++..|++.+ +.| ++|...++.+
T Consensus 161 vgiKd~~gd-----~~~-~~~~~~~~~~~~--f~v~~G~d~------~~~~~~~~G~~G~---is~----~~N~~p~~~~ 219 (299)
T COG0329 161 VGVKDSSGD-----LDR-LEEIIAALGDRD--FIVLSGDDE------LALPALLLGADGV---ISV----TANVAPELAV 219 (299)
T ss_pred EEEEeCCcC-----HHH-HHHHHHhcCccC--eeEEeCchH------HHHHHHhCCCCeE---Eec----ccccCHHHHH
Confidence 999999993 222 222333333210 122223332 2344555787654 332 5678777766
Q ss_pred HHHHh
Q 006969 331 MAFKC 335 (623)
Q Consensus 331 ~~L~~ 335 (623)
...+.
T Consensus 220 ~l~~~ 224 (299)
T COG0329 220 ELYRA 224 (299)
T ss_pred HHHHH
Confidence 55554
No 280
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.90 E-value=18 Score=37.59 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=87.0
Q ss_pred CCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeec-ccchhhHHHHHHHHhcCCCCEEEEEe-cCCHHHH
Q 006969 114 GVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS-RCNERDIKTAWEAVKYAKRPRIHTFI-ATSGIHM 191 (623)
Q Consensus 114 Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~-r~~~~dI~~a~eal~~a~~~~v~i~~-~~Sd~h~ 191 (623)
.+|.+-+|..-. ..++.++.+++. + .|++.--+ .+..+++..|++.+...|.+.|.+.= .++..
T Consensus 98 ~vdilqIgs~~~--~n~~LL~~va~t-g---------kPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y-- 163 (250)
T PRK13397 98 YLDVIQVGARNM--QNFEFLKTLSHI-D---------KPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGY-- 163 (250)
T ss_pred cCCEEEECcccc--cCHHHHHHHHcc-C---------CeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCC--
Confidence 477777764322 235677777653 1 14444444 45788999999999888887776653 33321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe----------ecCccccc
Q 006969 192 EHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN----------IPDTVGIT 260 (623)
Q Consensus 192 ~~~l~~t~ee~l~~~~~~v~~ak~-~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~----------l~DTvG~~ 260 (623)
.......++ + ..+...|+ .++. |.|++- =+--..+++..++.+++.+||+.+. ++|--=.+
T Consensus 164 ----~~~~~n~~d-l-~ai~~lk~~~~lP-Vivd~S-Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l 235 (250)
T PRK13397 164 ----DVETRNMLD-I-MAVPIIQQKTDLP-IIVDVS-HSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQI 235 (250)
T ss_pred ----CCccccccC-H-HHHHHHHHHhCCC-eEECCC-CCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhC
Confidence 111000111 1 22333343 5665 777553 2223468999999999999999433 57888889
Q ss_pred CHHHHHHHHHHHHH
Q 006969 261 MPTEFGKLIADIKA 274 (623)
Q Consensus 261 ~P~~v~~li~~l~~ 274 (623)
+|.++.++++.++.
T Consensus 236 ~~~~l~~l~~~~~~ 249 (250)
T PRK13397 236 DYKQLEQLGQELWQ 249 (250)
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999998864
No 281
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=85.89 E-value=55 Score=35.27 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH-----HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED-----FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKT 167 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d-----~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~ 167 (623)
..+.+.-..+.+.-.+++-..|=-.+|... +.+ ...++.+++..+- -+|...=|=-+ ..+.+.+
T Consensus 31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~-------~VPV~lHLDHg~~~e~i~~ 103 (321)
T PRK07084 31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGC-------PIPIVLHLDHGDSFELCKD 103 (321)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCC-------CCcEEEECCCCCCHHHHHH
Confidence 457899999999999999997755454321 111 1222333332110 12433222222 3445555
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC------CCCCHHH
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKF 235 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda------~r~d~e~ 235 (623)
|+++ |...|.+=. | ..+.+||++..++.+++|+.+|.. |+- +.||. ..|||+.
T Consensus 104 ai~~----GftSVMiD~--S--------~lp~eeNI~~T~evv~~Ah~~Gvs-VEaElG~igg~ed~~~~~~~~~T~pee 168 (321)
T PRK07084 104 CIDS----GFSSVMIDG--S--------HLPYEENVALTKKVVEYAHQFDVT-VEGELGVLAGVEDEVSAEHHTYTQPEE 168 (321)
T ss_pred HHHc----CCCEEEeeC--C--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeecCccCCccCcccccCCHHH
Confidence 5554 888775432 2 247899999999999999999974 542 22332 2578988
Q ss_pred HHHHHHHHHHcCCcEEeec--Cccccc-------CHHHHHHHHHHHHHhCCCCcceeEEEeecCCc--------------
Q 006969 236 LYEILGEVIKVGATTLNIP--DTVGIT-------MPTEFGKLIADIKANTPGIENVVISTHCQNDL-------------- 292 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~--DTvG~~-------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~-------------- 292 (623)
..++++. -|+|.+-++ -.=|.- .|.-=.++++.+++.++ ++||.+|.=-..
T Consensus 169 A~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~---~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 169 VEDFVKK---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP---GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred HHHHHHH---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC---CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 8877764 588865553 233332 24444568888888885 378999986532
Q ss_pred -----chHHHHHHHHHHhCCCEE
Q 006969 293 -----GLSTANTIAGACAGARQV 310 (623)
Q Consensus 293 -----GlAvANslaAv~aGA~~V 310 (623)
|....+-..|+..|+.-|
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KI 265 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKI 265 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCcee
Confidence 666677777777777766
No 282
>PLN02623 pyruvate kinase
Probab=85.88 E-value=75 Score=36.97 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+|..|+..| +...+.|||+|=+.|-. +++|...++...+..+.. ....+.| . +++.++.. +.+.. +
T Consensus 275 ~lTekD~~di-~f~~~~~vD~ialSFVr-~a~DV~~~r~~l~~~~~~----~~iiakI---E--t~eaVeNl-deIl~-g 341 (581)
T PLN02623 275 SITEKDWEDI-KFGVENKVDFYAVSFVK-DAQVVHELKDYLKSCNAD----IHVIVKI---E--SADSIPNL-HSIIT-A 341 (581)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCc----ceEEEEE---C--CHHHHHhH-HHHHH-h
Confidence 4777887775 57778999999998874 566766666665542211 0111222 1 34444432 33332 6
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc------c---CCCCCCHHHHHHHHHHHHHcC
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP------E---DAGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~------e---da~r~d~e~l~~~~~~~~~aG 247 (623)
.+. +|++-.|+=++. + .+++.....+.++.|+++|+. |.... . ..+|++.. ++.. ++..|
T Consensus 342 ~Dg--ImIgrgDLgvel--g--~~~v~~~qk~Ii~~~~~~gKp-vivaTQMLESMi~~~~PTRAEv~---Dva~-av~dG 410 (581)
T PLN02623 342 SDG--AMVARGDLGAEL--P--IEEVPLLQEEIIRRCRSMGKP-VIVATNMLESMIVHPTPTRAEVS---DIAI-AVREG 410 (581)
T ss_pred CCE--EEECcchhhhhc--C--cHHHHHHHHHHHHHHHHhCCC-EEEECchhhhcccCCCCCchhHH---HHHH-HHHcC
Confidence 665 466767755542 3 378888889999999999986 44311 1 34444433 4443 35679
Q ss_pred CcEEeec-CcccccCHHHHHHHHHHHHHh
Q 006969 248 ATTLNIP-DTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 248 a~~I~l~-DTvG~~~P~~v~~li~~l~~~ 275 (623)
++.|.|. ||.=...|.+.-+.+..+...
T Consensus 411 ~d~vmLs~Eta~G~yPveaV~~m~~I~~~ 439 (581)
T PLN02623 411 ADAVMLSGETAHGKFPLKAVKVMHTVALR 439 (581)
T ss_pred CCEEEecchhhcCcCHHHHHHHHHHHHHH
Confidence 9999997 777778999988887777654
No 283
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=85.84 E-value=12 Score=40.92 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=70.5
Q ss_pred EEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHH
Q 006969 221 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANT 299 (623)
Q Consensus 221 V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANs 299 (623)
..|.+. -+-.+++.-.+.++.+.+.+.+.+.|.--...-...++.++|..++..+|. +.|. |. +|.|. -+.
T Consensus 183 ~lfgiV-QGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~--~kPr--yl---~Gvg~P~~i 254 (366)
T PRK00112 183 ALFGIV-QGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPE--DKPR--YL---MGVGTPEDL 254 (366)
T ss_pred eEEEEe-eCCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCC--cCCe--Ee---cCCCCHHHH
Confidence 456665 334566776788888999999999888754445788899999999999986 3443 33 55555 578
Q ss_pred HHHHHhCCCEEEeccCCccCccCcc
Q 006969 300 IAGACAGARQVEVTINGIGERAGNA 324 (623)
Q Consensus 300 laAv~aGA~~Vd~Tv~GlGERaGNa 324 (623)
+.++..|+|.+|++.-=.=.|.|.+
T Consensus 255 ~~~v~~GvD~FD~~~p~r~Ar~G~a 279 (366)
T PRK00112 255 VEGVARGVDMFDCVMPTRNARNGTL 279 (366)
T ss_pred HHHHHcCCCEEeeCCccccccCCce
Confidence 8999999999999886544444433
No 284
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.82 E-value=11 Score=43.09 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec-CCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHh
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGF-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 173 (623)
+...++++-.+.++.|.++|+|.||+.. +..+..-.+.++.+.+..+.. ...++| .-...++.+.+++
T Consensus 235 ~~av~~~~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~-------~~V~aG-nV~t~e~a~~li~--- 303 (502)
T PRK07107 235 GAGINTRDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDS-------VKVGAG-NVVDREGFRYLAE--- 303 (502)
T ss_pred eeccChhhHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCC-------ceEEec-cccCHHHHHHHHH---
Confidence 4455666778999999999999999962 333333467888888754321 122332 1234566666555
Q ss_pred cCCCCEEEEEecCCHHHHHH-HhCC--CHHHHHHHHHHHH-HHHHHcCCCeEEEcccCCC-CCCHHHHHHHHHHHHHcCC
Q 006969 174 YAKRPRIHTFIATSGIHMEH-KLRK--TKQQVVEIARSMV-KFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~-~l~~--t~ee~l~~~~~~v-~~ak~~G~~~V~f~~eda~-r~d~e~l~~~~~~~~~aGa 248 (623)
+|++.|.+-+..--+...+ +++. ..-..+..+.+++ +|+++.|.. +.+-+ |++ |..- ++++++ .+||
T Consensus 304 -aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~-~~via-dgGir~~g----di~KAl-a~GA 375 (502)
T PRK07107 304 -AGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVY-IPICS-DGGIVYDY----HMTLAL-AMGA 375 (502)
T ss_pred -cCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCc-ceEEE-cCCCCchh----HHHHHH-HcCC
Confidence 4888877644333222222 3433 3333344444444 356667842 33333 433 4443 345544 4899
Q ss_pred cEEeec
Q 006969 249 TTLNIP 254 (623)
Q Consensus 249 ~~I~l~ 254 (623)
+.+.+.
T Consensus 376 ~~vm~G 381 (502)
T PRK07107 376 DFIMLG 381 (502)
T ss_pred CeeeeC
Confidence 998764
No 285
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.79 E-value=14 Score=40.05 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=79.2
Q ss_pred HHhcCCCCEEEEEec--------CCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-C----CC---eEEEcccC--CCC
Q 006969 171 AVKYAKRPRIHTFIA--------TSG--IHMEHKLRKTKQQVVEIARSMVKFARSL-G----CD---DVEFSPED--AGR 230 (623)
Q Consensus 171 al~~a~~~~v~i~~~--------~Sd--~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G----~~---~V~f~~ed--a~r 230 (623)
..+.+|.+.|.|-.+ .|+ .++..++|=+.+.-.+.+.+.++..|+. | .+ .+.+++.| .+-
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g 231 (353)
T cd04735 152 RAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPG 231 (353)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCC
Confidence 345689999877543 233 2344567778887788888888877764 4 22 14556643 223
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 006969 231 SDRKFLYEILGEVIKVGATTLNIPDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 306 (623)
.+++...++++.+.++|+|.|.+.-. .....|..-..+++.+++.+.. ++||-...-- - -...+..+++.|
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~--~iPVi~~Ggi--~-t~e~ae~~l~~g 306 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAG--RLPLIAVGSI--N-TPDDALEALETG 306 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCC--CCCEEEECCC--C-CHHHHHHHHHcC
Confidence 46777889999999999999988421 1111111123445556665531 2445443321 1 134566666667
Q ss_pred CCEE
Q 006969 307 ARQV 310 (623)
Q Consensus 307 A~~V 310 (623)
|+.|
T Consensus 307 aD~V 310 (353)
T cd04735 307 ADLV 310 (353)
T ss_pred CChH
Confidence 6643
No 286
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=85.73 E-value=39 Score=35.64 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEe----------ecCcccccCHHHHHHHHHHHHHh
Q 006969 231 SDRKFLYEILGEVIKVGATTLN----------IPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~----------l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
-+.+|+..++++++.+|+|.+. ++|--=.++|.++.++++.+++.
T Consensus 217 G~Re~V~~larAAvA~GaDGlfiEvHpdP~~AlsDg~q~l~~~~l~~ll~~l~~i 271 (290)
T PLN03033 217 GLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEELIAI 271 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcccCcCHHHHHHHHHHHHHH
Confidence 4689999999999999999775 57999999999999999888764
No 287
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=85.72 E-value=6.1 Score=41.95 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=74.9
Q ss_pred cccCC-CCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEE-eecCCcchHHHH
Q 006969 224 SPEDA-GRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVIST-HCQNDLGLSTAN 298 (623)
Q Consensus 224 ~~eda-~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~-H~HND~GlAvAN 298 (623)
.|-+. +..|.+-+.++++.+++.|++.|.++=|+| .++++|-.++++.+++...+ ++|+-+ .+.|+.--+++.
T Consensus 14 TPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g--rvpviaG~g~~~t~eai~l 91 (299)
T COG0329 14 TPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG--RVPVIAGVGSNSTAEAIEL 91 (299)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC--CCcEEEecCCCcHHHHHHH
Confidence 44443 679999999999999999999999999999 56899999999999998765 354555 578999999999
Q ss_pred HHHHHHhCCCEEEec
Q 006969 299 TIAGACAGARQVEVT 313 (623)
Q Consensus 299 slaAv~aGA~~Vd~T 313 (623)
+-.|-+.||+.|=+.
T Consensus 92 ak~a~~~Gad~il~v 106 (299)
T COG0329 92 AKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999997553
No 288
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=85.62 E-value=20 Score=35.96 Aligned_cols=151 Identities=21% Similarity=0.282 Sum_probs=75.0
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec----CCC----ChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGF----PAA----SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGf----P~~----s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (623)
+..++.++.++=++.+.+.|-++|++|- |.+ .+++++.+..+.+.+..... . ...++=-.+.+-++
T Consensus 13 ~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~---~---~plSIDT~~~~v~~ 86 (210)
T PF00809_consen 13 GRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENP---D---VPLSIDTFNPEVAE 86 (210)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHT---T---SEEEEEESSHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCC---C---eEEEEECCCHHHHH
Confidence 3455667777779999999999999994 322 12345555444443321000 0 11222234566677
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC----CCCCCH----HHHHH
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED----AGRSDR----KFLYE 238 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed----a~r~d~----e~l~~ 238 (623)
.++++ |.+.|.=..+.. ...+++..++++|+. |...+.+ .-..++ +.+.+
T Consensus 87 ~aL~~----g~~~ind~~~~~-----------------~~~~~~~l~a~~~~~-vV~m~~~~~~~~~~~~~~~~~~~~~~ 144 (210)
T PF00809_consen 87 AALKA----GADIINDISGFE-----------------DDPEMLPLAAEYGAP-VVLMHSDGNPKGMPETADYRLDIAEE 144 (210)
T ss_dssp HHHHH----TSSEEEETTTTS-----------------SSTTHHHHHHHHTSE-EEEESESSETTTTTSSHHHSHSHHHH
T ss_pred HHHHc----CcceEEeccccc-----------------ccchhhhhhhcCCCE-EEEEecccccccccccchhhhhHHHH
Confidence 77765 667654322211 023566777888875 4443333 111111 23334
Q ss_pred HHHH-------HHHcCC--cEEeecCccccc-CHHHHHHHHHHHH
Q 006969 239 ILGE-------VIKVGA--TTLNIPDTVGIT-MPTEFGKLIADIK 273 (623)
Q Consensus 239 ~~~~-------~~~aGa--~~I~l~DTvG~~-~P~~v~~li~~l~ 273 (623)
+.+. +.++|. +.|.|==-+|.. ++.+-.++++.++
T Consensus 145 i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~ 189 (210)
T PF00809_consen 145 IIEFLEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE 189 (210)
T ss_dssp HHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence 4444 444898 566653334432 3444444444433
No 289
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=85.55 E-value=23 Score=37.10 Aligned_cols=130 Identities=12% Similarity=0.004 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEE-ee---cccchhhHHHHHHHHh
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GL---SRCNERDIKTAWEAVK 173 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~-~~---~r~~~~dI~~a~eal~ 173 (623)
++.+-+....+...+.|++.|-+.+|.+. .+.++...+..++. |+....+ .+ .|...+.+....+.+.
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---~~~~~~~i~~ak~~-----G~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---VRNLEVAIKAVKKA-----GKHVEGAICYTGSPVHTLEYYVKLAKELE 159 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---HHHHHHHHHHHHHC-----CCeEEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 45555777788888889999999877543 22233222222111 2211111 11 3455555555555556
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 006969 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~ 252 (623)
.+|+++|.+....- ..+++++- +.++.+++. +. .+.|.+ ..|......-.-+++++|++.|-
T Consensus 160 ~~Ga~~i~l~DT~G--------~~~P~~v~----~lv~~l~~~~~~-~l~~H~----Hnd~GlA~aN~laA~~aGa~~vd 222 (275)
T cd07937 160 DMGADSICIKDMAG--------LLTPYAAY----ELVKALKKEVGL-PIHLHT----HDTSGLAVATYLAAAEAGVDIVD 222 (275)
T ss_pred HcCCCEEEEcCCCC--------CCCHHHHH----HHHHHHHHhCCC-eEEEEe----cCCCChHHHHHHHHHHhCCCEEE
Confidence 66777776654332 12344332 233333332 32 255543 23334444445555667776554
No 290
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.47 E-value=20 Score=36.19 Aligned_cols=138 Identities=23% Similarity=0.310 Sum_probs=89.2
Q ss_pred HHHHHHHHhHcCCCEEEEecC----CCChh-HHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 103 KLDIARQLAKLGVDIIEAGFP----AASKE-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 103 Kl~Ia~~L~~~Gvd~IEvGfP----~~s~~-d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
-.+-|..|.++|+|.|--|-- .-+|+ |.+....|.+.. + +|++.. .- +.+++|+..++
T Consensus 56 t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~-~--------v~vvTt-----s~---Avv~aL~al~a 118 (238)
T COG3473 56 TERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAK-G--------VPVVTT-----ST---AVVEALNALGA 118 (238)
T ss_pred HHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhcc-C--------Cceeec-----hH---HHHHHHHhhCc
Confidence 345577889999999987631 12222 555555555432 1 233321 11 22345555688
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cc--c---CCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SP--E---DAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~~--e---da~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
.+|.+..|-.+ +.-+..++|....|++.|.| +. . ..+|.+|..++++++.+..-++|.|
T Consensus 119 ~ri~vlTPY~~---------------evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~Dai 183 (238)
T COG3473 119 QRISVLTPYID---------------EVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAI 183 (238)
T ss_pred ceEEEeccchh---------------hhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeE
Confidence 99998877543 22335678889999986665 22 2 4779999999999999998899998
Q ss_pred eecCcccccCHHHHHHHHHHHHHhCC
Q 006969 252 NIPDTVGITMPTEFGKLIADIKANTP 277 (623)
Q Consensus 252 ~l~DTvG~~~P~~v~~li~~l~~~~~ 277 (623)
.+. ++-.+..+.|..+-+.+.
T Consensus 184 FiS-----CTnlRt~eii~~lE~~~G 204 (238)
T COG3473 184 FIS-----CTNLRTFEIIEKLERDTG 204 (238)
T ss_pred EEE-----eeccccHHHHHHHHHHhC
Confidence 886 444556667777766653
No 291
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=85.37 E-value=5.6 Score=42.90 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCc-ccccCHHHHHHHHHHHHHhCCCCcceeEEEee---------cCCcchHHHH
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLNIPDT-VGITMPTEFGKLIADIKANTPGIENVVISTHC---------QNDLGLSTAN 298 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~l~DT-vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~---------HND~GlAvAN 298 (623)
++.++|.+.+.++.+.+.|+++|.|.+- .-...++.+.++++.+++..|+ +.+|| |.+.|+-...
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~-----i~~~~~t~~ei~~~~~~~g~~~~e 142 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG-----MHIHAFSPMEVYYGARNSGLSVEE 142 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC-----ceEEecCHHHHHHHHHHcCCCHHH
Confidence 4568899999999999999999999832 2124566778999999998774 44554 5677876666
Q ss_pred HHHHH-HhCCCEEE
Q 006969 299 TIAGA-CAGARQVE 311 (623)
Q Consensus 299 slaAv-~aGA~~Vd 311 (623)
.+..+ +||++.+.
T Consensus 143 ~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 143 ALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHHHHhCccccc
Confidence 65544 46999886
No 292
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=85.36 E-value=41 Score=33.76 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhHcCCCEEEEec----CCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 101 KEKLDIARQLAKLGVDIIEAGF----PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvGf----P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+=+++++.+.+.|++.|-+-- ....+.+++.++.+++.+. .|.+.+-+-...+|+++.+++ |
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~---------~pv~~~GGI~~~ed~~~~~~~----G 96 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVD---------IPVQVGGGIRSLETVEALLDA----G 96 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCC---------CCEEEcCCcCCHHHHHHHHHc----C
Confidence 3668899999999999998843 2223456788988887642 133433333467788776664 7
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc------CCCC-CCHHHHHHHHHHHHHcCCc
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE------DAGR-SDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e------da~r-~d~e~l~~~~~~~~~aGa~ 249 (623)
++.|.+ .+.-+ .+ .+.+.+.++...+. + .+.++.- .+.. .....+.++++.+.+.|++
T Consensus 97 a~~vil--g~~~l-------~~----~~~l~ei~~~~~~~-i-~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~ 161 (233)
T PRK00748 97 VSRVII--GTAAV-------KN----PELVKEACKKFPGK-I-VVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVK 161 (233)
T ss_pred CCEEEE--CchHH-------hC----HHHHHHHHHHhCCC-c-eeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCC
Confidence 777633 22111 01 12233333333221 1 1222210 1110 0112345678888889999
Q ss_pred EEeecCcc--cccCHHHHHHHHHHHHHhCC
Q 006969 250 TLNIPDTV--GITMPTEFGKLIADIKANTP 277 (623)
Q Consensus 250 ~I~l~DTv--G~~~P~~v~~li~~l~~~~~ 277 (623)
.|.+-|.. |...-. =.++++.+++.++
T Consensus 162 ~ii~~~~~~~g~~~G~-d~~~i~~l~~~~~ 190 (233)
T PRK00748 162 AIIYTDISRDGTLSGP-NVEATRELAAAVP 190 (233)
T ss_pred EEEEeeecCcCCcCCC-CHHHHHHHHHhCC
Confidence 76665432 333321 1356666776654
No 293
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=85.22 E-value=42 Score=37.14 Aligned_cols=146 Identities=7% Similarity=-0.010 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHhHc-CCCEEEEec----CCCChhHH--HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHH
Q 006969 97 TLTSKEKLDIARQLAKL-GVDIIEAGF----PAASKEDF--EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~-Gvd~IEvGf----P~~s~~d~--e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (623)
.|+.+.-.++++.+.+. |+..+.+.| |-..+.++ ++++.+.+..... ++...|+.=+-...+ ...
T Consensus 47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~-----~i~~~i~TNG~ll~~---e~~ 118 (412)
T PRK13745 47 VMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGR-----QIDNCIQTNGTLLTD---EWC 118 (412)
T ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCC-----ceEEEEeecCEeCCH---HHH
Confidence 48888888888887764 778877754 65555433 2222222221110 121122221111111 223
Q ss_pred HHHhcCCCCEEEEEecCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCC
Q 006969 170 EAVKYAKRPRIHTFIATS-GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~S-d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa 248 (623)
+.++..+. .|.|.+-.. ++|-.......-....+.+.+.++.++++|+. +.... -.++.+.+++.++++.+.+.|+
T Consensus 119 ~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~-~~i~~-vv~~~n~~~~~e~~~~~~~lg~ 195 (412)
T PRK13745 119 EFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVE-WNAMA-VVNDFNADYPLDFYHFFKELDC 195 (412)
T ss_pred HHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCC-EEEEE-EEcCCccccHHHHHHHHHHcCC
Confidence 44555565 666654433 34544332111124578888889999999975 43322 2345566777888888889999
Q ss_pred cEEee
Q 006969 249 TTLNI 253 (623)
Q Consensus 249 ~~I~l 253 (623)
+.+.+
T Consensus 196 ~~~~~ 200 (412)
T PRK13745 196 HYIQF 200 (412)
T ss_pred CeEEE
Confidence 87765
No 294
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=85.09 E-value=13 Score=38.92 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=80.7
Q ss_pred HHHHHHhHcCCCEEEEec---------CCCChhH----HHHHHHHHHHhccccccCCCccceEEee--ccc--chhh-HH
Q 006969 105 DIARQLAKLGVDIIEAGF---------PAASKED----FEAVRTIAKEVGNAVDAESGYVPVICGL--SRC--NERD-IK 166 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGf---------P~~s~~d----~e~v~~i~~~~~~~~~~~~~l~~~i~~~--~r~--~~~d-I~ 166 (623)
.-++.++++|||.|=+|. |...+-. ...++.+++-.+.. +.+..+ .-. ..++ ++
T Consensus 26 ~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p--------~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 26 PFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRA--------LVVADMPFGSYQASPEQALR 97 (264)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCC--------cEEEeCCCCCccCCHHHHHH
Confidence 457888999999998873 3222212 34445555432211 123222 211 2233 56
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----Eccc---------CCCCCC-
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE---------DAGRSD- 232 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~----f~~e---------da~r~d- 232 (623)
.+.+.++++|+..|++-.. +...+.|+.+++.|+. |+ +.|. -.+|++
T Consensus 98 ~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al~~agIp-V~gHiGL~pq~~~~~gg~~i~grt~~ 158 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGG------------------EEVAETIKRLVERGIP-VMGHLGLTPQSVNVLGGYKVQGRDEE 158 (264)
T ss_pred HHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHCCCC-EeeeecccceeecccCCeeeecCCHH
Confidence 6777777789988887543 1234567777788876 43 2222 123554
Q ss_pred -HHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCC
Q 006969 233 -RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (623)
Q Consensus 233 -~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~ 277 (623)
.+.+++-++++.++||+.|.|.= .|.+ +.+.+.+.++
T Consensus 159 ~a~~~i~ra~a~~eAGA~~i~lE~-----v~~~---~~~~i~~~l~ 196 (264)
T PRK00311 159 AAEKLLEDAKALEEAGAFALVLEC-----VPAE---LAKEITEALS 196 (264)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcC-----CCHH---HHHHHHHhCC
Confidence 46777888889999999999862 2443 5555555553
No 295
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=85.09 E-value=11 Score=39.44 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC---CcEEeecCcccccCHHH------HHHHHHHHHHhC
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPTE------FGKLIADIKANT 276 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG---a~~I~l~DTvG~~~P~~------v~~li~~l~~~~ 276 (623)
..++++.+++ .. +.+. .+|-+.-.+..+.+.++..| ..++.|.|++-. ..+. +..-++.+|+.+
T Consensus 107 t~~~v~~a~~--~~-~~i~---~TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~vli-kdnHi~~~g~i~~~v~~~r~~~ 179 (268)
T cd01572 107 TRRYVEALAG--TK-ARIL---DTRKTTPGLRLLEKYAVRCGGGDNHRFGLSDAVLI-KDNHIAAAGSITEAVRRARAAA 179 (268)
T ss_pred HHHHHHHhCC--CC-EEEE---eCCCCChhhHHHHHHHHHhCCCccccCCCcceeee-ehHHHHHhCCHHHHHHHHHHhC
Confidence 3455555554 22 4332 23555555777777777774 358888887743 3332 345678888888
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHH
Q 006969 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMA 356 (623)
Q Consensus 277 ~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~ 356 (623)
|. ..+|++=||| +.-+..|+++|||+|-. ||..+|++-...........--..-||+++.+.++
T Consensus 180 ~~--~~~Igvev~s-----~eea~~A~~~gaDyI~l---------d~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~ 243 (268)
T cd01572 180 PF--TLKIEVEVET-----LEQLKEALEAGADIIML---------DNMSPEELREAVALLKGRVLLEASGGITLENIRAY 243 (268)
T ss_pred CC--CCeEEEEECC-----HHHHHHHHHcCCCEEEE---------CCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHH
Confidence 74 2468888887 56778889999999865 57778888776664321100112347888887766
Q ss_pred HH
Q 006969 357 SK 358 (623)
Q Consensus 357 s~ 358 (623)
++
T Consensus 244 a~ 245 (268)
T cd01572 244 AE 245 (268)
T ss_pred HH
Confidence 53
No 296
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.03 E-value=22 Score=38.20 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCCh-----h--H--HHHHHHHHHHhccccccCCCccceEEeecccchhhHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASK-----E--D--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~-----~--d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (623)
.+.++-.++++.+.++|+|.||+-+ |-..+ . + ++.++.+.+... .|.+.=+ +....++.
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~---------iPV~vKl-~p~~~~~~ 180 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS---------IPVAVKL-SPYFSNLA 180 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC---------CcEEEEe-CCCchhHH
Confidence 4678889999999999999999943 21111 0 1 233444443211 2333222 22334565
Q ss_pred HHHHHHhcCCCCEEEEEecCCH--HHHHH-----HhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCHHHHHH
Q 006969 167 TAWEAVKYAKRPRIHTFIATSG--IHMEH-----KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd--~h~~~-----~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~e~l~~ 238 (623)
...+++..+|++.|.++..... +..+. ..+.|-...+..+.+.|..+++. ++. |.- .++=.+.+.+.+
T Consensus 181 ~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ip-Iig---~GGI~s~~Da~e 256 (334)
T PRK07565 181 NMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGAD-LAA---TTGVHDAEDVIK 256 (334)
T ss_pred HHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCC-EEE---ECCCCCHHHHHH
Confidence 5666677789998877655321 11110 12334444555666777777654 233 222 355566676666
Q ss_pred HHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhC
Q 006969 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~ 276 (623)
++ .+||+.+-++=.+=.--|.-+.++++.|++.+
T Consensus 257 ~l----~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l 290 (334)
T PRK07565 257 ML----LAGADVVMIASALLRHGPDYIGTILRGLEDWM 290 (334)
T ss_pred HH----HcCCCceeeehHHhhhCcHHHHHHHHHHHHHH
Confidence 55 37998888873222212666677777776543
No 297
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=84.99 E-value=53 Score=34.33 Aligned_cols=193 Identities=14% Similarity=0.165 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhh-HHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (623)
.+..+.-.++++.|.+.||+-|=+ | ++.-+.+|+ +.++...+... +.++.+.+.+..+.++ ++.+
T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-------~~~~vi~gv~~~s~~~~i~~a- 86 (285)
T TIGR00674 15 SVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-------GRVPVIAGTGSNATEEAISLT- 86 (285)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-------CCCeEEEeCCCccHHHHHHHH-
Confidence 478888899999999999998876 4 355566665 44555555543 2346777766544444 4444
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEc-cc-CCCCCCHHHHHHHHHHHHHcC
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS-PE-DAGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~-~e-da~r~d~e~l~~~~~~~~~aG 247 (623)
+..+.+|++.|-+.-|.. +..+.+++++-..+.++.+ ++..+.|+ |. -+...+++.+.+++ +.+
T Consensus 87 ~~a~~~Gad~v~v~pP~y-------~~~~~~~i~~~~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~----~~~ 152 (285)
T TIGR00674 87 KFAEDVGADGFLVVTPYY-------NKPTQEGLYQHFKAIAEEV---DLPIILYNVPSRTGVSLYPETVKRLA----EEP 152 (285)
T ss_pred HHHHHcCCCEEEEcCCcC-------CCCCHHHHHHHHHHHHhcC---CCCEEEEECcHHhcCCCCHHHHHHHH----cCC
Confidence 334567999887755542 3456777766666555543 44544553 42 23455666655544 433
Q ss_pred CcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHH
Q 006969 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (623)
Q Consensus 248 a~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lE 327 (623)
..+.+.|+.|- +..+.+++ +..++ + +.+-+=+|. ..+.++..|++.. +.| .+|.-.+
T Consensus 153 -~v~giK~s~~d--~~~~~~l~----~~~~~--~--~~v~~G~d~-----~~~~~~~~G~~G~---i~~----~~~~~P~ 209 (285)
T TIGR00674 153 -NIVAIKEATGN--LERISEIK----AIAPD--D--FVVLSGDDA-----LTLPMMALGGKGV---ISV----TANVAPK 209 (285)
T ss_pred -CEEEEEeCCCC--HHHHHHHH----HhcCC--C--eEEEECchH-----HHHHHHHcCCCEE---Eeh----HHHhhHH
Confidence 68999999874 34444443 33442 1 233332331 2356788998655 333 3466556
Q ss_pred HHHHHHH
Q 006969 328 EVVMAFK 334 (623)
Q Consensus 328 evv~~L~ 334 (623)
.++...+
T Consensus 210 ~~~~l~~ 216 (285)
T TIGR00674 210 LMKEMVN 216 (285)
T ss_pred HHHHHHH
Confidence 5554444
No 298
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=84.82 E-value=56 Score=34.46 Aligned_cols=184 Identities=16% Similarity=0.143 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhHH--HHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KEDF--EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d~--e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (623)
.++.+.-..+.+.-.+.+...|=-.+|... +.++ ..++.+++.. -+|...=|=.+ ..+.++.+++
T Consensus 25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~---------~vpv~lHlDH~~~~e~i~~Al~ 95 (281)
T PRK06806 25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQA---------KVPVAVHFDHGMTFEKIKEALE 95 (281)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999997755455432 2222 3444444432 13433333333 2334444444
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE-----Ec-ccC------CCCCCHHHHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE-----FS-PED------AGRSDRKFLYE 238 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~-----f~-~ed------a~r~d~e~l~~ 238 (623)
+|+..|.+=.+ ..+.+|+++..++.+++++..|.. |+ .+ -+| .+-++++.+.+
T Consensus 96 ----~G~tsVm~d~s----------~~~~~eni~~t~~v~~~a~~~gv~-veaE~ghlG~~d~~~~~~g~s~t~~eea~~ 160 (281)
T PRK06806 96 ----IGFTSVMFDGS----------HLPLEENIQKTKEIVELAKQYGAT-VEAEIGRVGGSEDGSEDIEMLLTSTTEAKR 160 (281)
T ss_pred ----cCCCEEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeECCccCCcccccceeCCHHHHHH
Confidence 38887765333 246789999999999999999974 43 22 111 23467776655
Q ss_pred HHHHHHHcCCcEEee--cCccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 239 ILGEVIKVGATTLNI--PDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l--~DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
.++ +.|+|.+.+ .=.-|.. .|.-=-++++.+++.++ +||-.|+ -.|.-..|...++++|++.|.+.
T Consensus 161 f~~---~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~----iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 161 FAE---ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH----IPLVLHG--GSGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred HHH---hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC----CCEEEEC--CCCCCHHHHHHHHHcCCcEEEEh
Confidence 543 469998887 3333322 12223356777777763 6787665 45888899999999999998653
No 299
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=84.77 E-value=23 Score=39.49 Aligned_cols=92 Identities=9% Similarity=0.009 Sum_probs=66.4
Q ss_pred chhhHH-HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHH
Q 006969 161 NERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 238 (623)
Q Consensus 161 ~~~dI~-~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~ 238 (623)
++..+. .-++.++.+|+.+|.+-+-+.+-...+.+++.. ..+.+.++++.+++.|+..|.++...+ ...+++.+.+
T Consensus 135 ~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~ 212 (430)
T PRK08208 135 SPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ--KRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWME 212 (430)
T ss_pred CcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHH
Confidence 444442 335677778999999977776656767777753 456778899999999986444443322 3567788999
Q ss_pred HHHHHHHcCCcEEeec
Q 006969 239 ILGEVIKVGATTLNIP 254 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~ 254 (623)
.++.+.+.|++.|.+-
T Consensus 213 ~l~~~~~l~~~~is~y 228 (430)
T PRK08208 213 SLDQALVYRPEELFLY 228 (430)
T ss_pred HHHHHHhCCCCEEEEc
Confidence 9999999999888765
No 300
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=84.60 E-value=12 Score=38.47 Aligned_cols=176 Identities=22% Similarity=0.283 Sum_probs=103.6
Q ss_pred HHHHhHcCCCEEEEe---------cCCC---ChhH-HHHHHHHHHHhccccccCCCccceEEe----ecccchhhHHHHH
Q 006969 107 ARQLAKLGVDIIEAG---------FPAA---SKED-FEAVRTIAKEVGNAVDAESGYVPVICG----LSRCNERDIKTAW 169 (623)
Q Consensus 107 a~~L~~~Gvd~IEvG---------fP~~---s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~----~~r~~~~dI~~a~ 169 (623)
++.+.++|++.|=.+ +|-. +.+| .+.++.|++... .|.+.. |+. ....+.+.+
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~---------iPv~vD~d~GyG~-~~~~v~~tv 91 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVS---------IPVIVDADTGYGN-DPENVARTV 91 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSS---------SEEEEE-TTTSSS-SHHHHHHHH
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhc---------CcEEEEcccccCc-hhHHHHHHH
Confidence 566778899988774 3421 1122 466777776542 133332 332 266778888
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC---CCCHHHHHHHHHHHHHc
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG---RSDRKFLYEILGEVIKV 246 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~---r~d~e~l~~~~~~~~~a 246 (623)
+.+..+|+..|+|-..-.. | ..+-=.+.+|..++++.+++..++.++ +...=-|+. ....+..++=+++..++
T Consensus 92 ~~~~~aG~agi~IEDq~~~-~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~--~I~ARTDa~~~~~~~~deaI~R~~aY~eA 167 (238)
T PF13714_consen 92 RELERAGAAGINIEDQRCG-H-GGKQLVSPEEMVAKIRAAVDARRDPDF--VIIARTDAFLRAEEGLDEAIERAKAYAEA 167 (238)
T ss_dssp HHHHHCT-SEEEEESBSTT-T-STT-B--HHHHHHHHHHHHHHHSSTTS--EEEEEECHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEEeeccccC-C-CCCceeCHHHHHHHHHHHHHhccCCeE--EEEEeccccccCCCCHHHHHHHHHHHHHc
Confidence 8788899999999877111 3 111123899999999988888877774 222111221 23446677777788899
Q ss_pred CCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 247 GATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 247 Ga~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
|||.|.++ |...++++.++.+.+. .|+-+..+ .+. -+.-.--+.|+++|-
T Consensus 168 GAD~ifi~---~~~~~~~i~~~~~~~~--------~Pl~v~~~--~~~--~~~~eL~~lGv~~v~ 217 (238)
T PF13714_consen 168 GADMIFIP---GLQSEEEIERIVKAVD--------GPLNVNPG--PGT--LSAEELAELGVKRVS 217 (238)
T ss_dssp T-SEEEET---TSSSHHHHHHHHHHHS--------SEEEEETT--SSS--S-HHHHHHTTESEEE
T ss_pred CCCEEEeC---CCCCHHHHHHHHHhcC--------CCEEEEcC--CCC--CCHHHHHHCCCcEEE
Confidence 99999975 5577777777776662 35666664 222 344455566877774
No 301
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=84.55 E-value=39 Score=32.37 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCcccccC---HHHHHHHHHHHHHhC-CCCcceeEEE--eecCCcchHHHH--HHHHHH
Q 006969 233 RKFLYEILGEVIKVGATTLNIPDTVGITM---PTEFGKLIADIKANT-PGIENVVIST--HCQNDLGLSTAN--TIAGAC 304 (623)
Q Consensus 233 ~e~l~~~~~~~~~aGa~~I~l~DTvG~~~---P~~v~~li~~l~~~~-~~~~~v~i~~--H~HND~GlAvAN--slaAv~ 304 (623)
.+...+.++.+.++||+.+.+.-..+... ++++.+.++.+.+.. .+ +++-+ -.+.......-. +..+.+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~pv~iy~~p~~~~~~~~~~~~~~~~~~ 140 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGG---LPLKVILETRGLKTADEIAKAARIAAE 140 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCC---ceEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67888899999999999998876666544 477888888888764 22 33333 223321222211 223457
Q ss_pred hCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 305 AGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 305 aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
.|++.|..+.... .|+.+++.+....+
T Consensus 141 ~g~~~iK~~~~~~---~~~~~~~~~~~i~~ 167 (201)
T cd00945 141 AGADFIKTSTGFG---GGGATVEDVKLMKE 167 (201)
T ss_pred hCCCEEEeCCCCC---CCCCCHHHHHHHHH
Confidence 8999998877432 35556665544433
No 302
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=84.54 E-value=2.1 Score=44.10 Aligned_cols=145 Identities=20% Similarity=0.178 Sum_probs=80.0
Q ss_pred HHHhHcC--CCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEe-ec--cc-chhhHHHHHHHHhcCCCCEEE
Q 006969 108 RQLAKLG--VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-LS--RC-NERDIKTAWEAVKYAKRPRIH 181 (623)
Q Consensus 108 ~~L~~~G--vd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-~~--r~-~~~dI~~a~eal~~a~~~~v~ 181 (623)
..|.-+| ||.+=.||..+.-...+.+++..+..... +. ....| +. -+ .+.-++.-++..+..|.+.|-
T Consensus 29 dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~-----gV-~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 29 DLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSH-----GV-YVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCT-----T--EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHc-----CC-eEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 3444455 89999998654333334555544432110 11 11111 00 00 133456666777778999999
Q ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE--EEc---ccCCCCCCHHHHHHHHHHHHHcCCcEE-----
Q 006969 182 TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV--EFS---PEDAGRSDRKFLYEILGEVIKVGATTL----- 251 (623)
Q Consensus 182 i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V--~f~---~eda~r~d~e~l~~~~~~~~~aGa~~I----- 251 (623)
+...+-++ +. +.-.+.|+.+++.|++ | +++ ++.....+++.+.+.++.-.++||+.|
T Consensus 103 iSdGti~l--------~~----~~r~~~I~~~~~~Gf~-v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 169 (244)
T PF02679_consen 103 ISDGTIDL--------PE----EERLRLIRKAKEEGFK-VLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR 169 (244)
T ss_dssp E--SSS-----------H----HHHHHHHHHHCCTTSE-EEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred ecCCceeC--------CH----HHHHHHHHHHHHCCCE-EeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 87766442 32 2334679999999985 4 453 333445567889999999999999877
Q ss_pred -----eecCcccccCHHHHHHHHHH
Q 006969 252 -----NIPDTVGITMPTEFGKLIAD 271 (623)
Q Consensus 252 -----~l~DTvG~~~P~~v~~li~~ 271 (623)
.|+|..|-.....+.+++..
T Consensus 170 EsG~~Gi~~~~g~~r~d~v~~i~~~ 194 (244)
T PF02679_consen 170 ESGKGGIYDNDGEVRTDLVEKIIER 194 (244)
T ss_dssp TT--STTB-TTS-B-HHHHHHHHTT
T ss_pred ccCCCCccCCCCCccHHHHHHHHHh
Confidence 46788888888877777654
No 303
>PRK08508 biotin synthase; Provisional
Probab=84.37 E-value=3.2 Score=43.51 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEE-c-ccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEF-S-PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLI 269 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f-~-~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li 269 (623)
+++|++++. ++++++.|...+.+ . -......+.+++.++++.+.+.+.. +.++-+.|..+++++.+|-
T Consensus 40 ~s~eeI~~~----a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk 109 (279)
T PRK08508 40 KDIEQIVQE----AKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELK 109 (279)
T ss_pred CCHHHHHHH----HHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHH
Confidence 566666554 33445556654433 1 1111123557777777777766532 2234456777766555553
No 304
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=84.30 E-value=12 Score=39.17 Aligned_cols=130 Identities=21% Similarity=0.184 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC---CcEEeecCcccccCHH-----HHHHHHHHHHHhCC
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANTP 277 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG---a~~I~l~DTvG~~~P~-----~v~~li~~l~~~~~ 277 (623)
..++++.+++ .. +.+. .+|-+.-.+..+.+.++..| ..++.|.|++-.-.-+ .+...++.+|+..|
T Consensus 106 t~~~v~~a~~--~~-~~i~---~TRKt~Pg~r~~~k~Av~~GGg~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~ 179 (269)
T cd01568 106 TRRYVEAARG--TK-ARIA---DTRKTTPGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAP 179 (269)
T ss_pred HHHHHHHhCC--CC-EEEe---ecCCCChhhHHHHHHHHHhCCCccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCC
Confidence 3445555544 22 3332 23555455777777777764 3588888876544322 24456888999887
Q ss_pred CCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhccc--ccccccccCCChhHHHH
Q 006969 278 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGE--HILGGLYTGINTRHIVM 355 (623)
Q Consensus 278 ~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~--~~~~G~~t~idl~~L~~ 355 (623)
. +..|++-+|| ..-+..|+++||++|-. ||...|++-........ +..--..-||+++.+.+
T Consensus 180 ~--~~~I~vev~t-----~eea~~A~~~gaD~I~l---------d~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~ 243 (269)
T cd01568 180 F--EKKIEVEVET-----LEEAEEALEAGADIIML---------DNMSPEELKEAVKLLKGLPRVLLEASGGITLENIRA 243 (269)
T ss_pred C--CCeEEEecCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHH
Confidence 4 3568888887 67788899999999865 66767776654443211 11011234788887776
Q ss_pred HH
Q 006969 356 AS 357 (623)
Q Consensus 356 ~s 357 (623)
++
T Consensus 244 ~a 245 (269)
T cd01568 244 YA 245 (269)
T ss_pred HH
Confidence 65
No 305
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=84.26 E-value=19 Score=36.03 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=80.6
Q ss_pred ceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCC
Q 006969 152 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSG-IHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAG 229 (623)
Q Consensus 152 ~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd-~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~ 229 (623)
|.+.-++=...+++..+.+.++.+|.+.|.+-..... .+....+|-+.+...+.+.+.++..++. ++. |.+..-.+
T Consensus 56 p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~-v~vk~r~~- 133 (231)
T cd02801 56 PLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP-VTVKIRLG- 133 (231)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC-EEEEEeec-
Confidence 3444444335677777777777789998887654322 2223334544455556666666666654 222 33311101
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch-HHHHHHHHHHh
Q 006969 230 RSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACA 305 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANslaAv~a 305 (623)
..+.+...++++.+.++|++.|.+-+-.. ...|. -.+.++.+++... +||..- -|. -...+..+++.
T Consensus 134 ~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~~~~~i~~~~~----ipvi~~----Ggi~~~~d~~~~l~~ 204 (231)
T cd02801 134 WDDEEETLELAKALEDAGASALTVHGRTREQRYSGPA-DWDYIAEIKEAVS----IPVIAN----GDIFSLEDALRCLEQ 204 (231)
T ss_pred cCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCC-CHHHHHHHHhCCC----CeEEEe----CCCCCHHHHHHHHHh
Confidence 11115677889999999999998765421 22222 2355666776542 445432 122 13344555565
Q ss_pred -CCCEEE
Q 006969 306 -GARQVE 311 (623)
Q Consensus 306 -GA~~Vd 311 (623)
||+.|-
T Consensus 205 ~gad~V~ 211 (231)
T cd02801 205 TGVDGVM 211 (231)
T ss_pred cCCCEEE
Confidence 666653
No 306
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=84.18 E-value=12 Score=38.49 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=80.2
Q ss_pred HHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecC
Q 006969 107 ARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIAT 186 (623)
Q Consensus 107 a~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~ 186 (623)
++.|.++|++.|-+++.-. .++..++.+++. + .|.|..-+.+..++|+.|++.++..+...+.+.-.+
T Consensus 82 ~d~l~~~~~~~~KIaS~dl--~n~~lL~~~A~t---------g-kPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~ 149 (241)
T PF03102_consen 82 VDFLEELGVPAYKIASGDL--TNLPLLEYIAKT---------G-KPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCV 149 (241)
T ss_dssp HHHHHHHT-SEEEE-GGGT--T-HHHHHHHHTT-----------S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-
T ss_pred HHHHHHcCCCEEEeccccc--cCHHHHHHHHHh---------C-CcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 6677888999999976533 256788888873 1 278889999999999999999866666666665333
Q ss_pred CH--HHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE----ee------
Q 006969 187 SG--IHMEHKLRKTKQQVVEIARSMVKFAR-SLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL----NI------ 253 (623)
Q Consensus 187 Sd--~h~~~~l~~t~ee~l~~~~~~v~~ak-~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I----~l------ 253 (623)
|. ... ...|. ..+...+ ..|+. |.||--.. ... +.-+++..||..| .|
T Consensus 150 s~YP~~~-e~~NL----------~~i~~L~~~f~~~-vG~SDHt~-----g~~--~~~~AvalGA~vIEKHfTldr~~~g 210 (241)
T PF03102_consen 150 SSYPTPP-EDVNL----------RVIPTLKERFGVP-VGYSDHTD-----GIE--APIAAVALGARVIEKHFTLDRNLKG 210 (241)
T ss_dssp SSSS--G-GG--T----------THHHHHHHHSTSE-EEEEE-SS-----SSH--HHHHHHHTT-SEEEEEB-S-TTSCS
T ss_pred CCCCCCh-HHcCh----------HHHHHHHHhcCCC-EEeCCCCC-----CcH--HHHHHHHcCCeEEEEEEECCCCCCC
Confidence 32 111 11222 2233333 56764 77764211 222 3335667898643 33
Q ss_pred cCcccccCHHHHHHHHHHHHHh
Q 006969 254 PDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 254 ~DTvG~~~P~~v~~li~~l~~~ 275 (623)
+|-.-.+.|.++.++|+.+|+.
T Consensus 211 ~Dh~~Sl~p~el~~lv~~ir~~ 232 (241)
T PF03102_consen 211 PDHKFSLEPDELKQLVRDIREV 232 (241)
T ss_dssp TTGCCCB-HHHHHHHHHHHHHH
T ss_pred CChhhcCCHHHHHHHHHHHHHH
Confidence 5788889999999999999874
No 307
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=84.14 E-value=3.4 Score=43.36 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCC
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~G 316 (623)
..-++.+.++|+|.| |-....+| ..+++..+|+++ + +++-.-|-+ +..++.|++.||+.|-+|+.|
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~---~l~MAD~st-----leEal~a~~~Gad~I~TTl~g 142 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-K---VPFVCGARN-----LGEALRRISEGAAMIRTKGEA 142 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-C---CcEEccCCC-----HHHHHHHHHCCCCEEEecCCC
Confidence 455778889999999 87777788 688999999887 3 455544444 788999999999999999986
Q ss_pred ccCccCc
Q 006969 317 IGERAGN 323 (623)
Q Consensus 317 lGERaGN 323 (623)
.+||
T Consensus 143 ---yT~~ 146 (283)
T cd04727 143 ---GTGN 146 (283)
T ss_pred ---CCCc
Confidence 3565
No 308
>PLN02433 uroporphyrinogen decarboxylase
Probab=84.12 E-value=9.3 Score=41.26 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCcEEeecC-cccccCHHHHHHHH--------HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 006969 234 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLI--------ADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~D-TvG~~~P~~v~~li--------~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 304 (623)
+.+.+++++.+++||+.+.+.| +.|.+.|+++.+++ +.+++..+ .+++.+|.+.+. ..--.-.+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~---~~~~ilh~cG~~----~~~~~~~~ 251 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHP---DVPLILYANGSG----GLLERLAG 251 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEeCCCH----HHHHHHHh
Confidence 3455666777789999999998 55566777777554 34443322 246888988763 11223334
Q ss_pred hCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 305 AGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 305 aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
.|++.+.. +.+ .++++....+.
T Consensus 252 ~~~~~i~~-----d~~---~dl~e~~~~~g 273 (345)
T PLN02433 252 TGVDVIGL-----DWT---VDMADARRRLG 273 (345)
T ss_pred cCCCEEEc-----CCC---CCHHHHHHHhC
Confidence 58876642 222 68877765554
No 309
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=84.08 E-value=12 Score=39.40 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecC--cccccC-HHHHHHHHHHHHHhCCCCcce
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD--TVGITM-PTEFGKLIADIKANTPGIENV 282 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~D--TvG~~~-P~~v~~li~~l~~~~~~~~~v 282 (623)
+.++.+.|++.|+..-.|+. .+.+.+..+++++.+.+...|-..- ++.+.. ...+..++..+.++.+ .+
T Consensus 4 ~~~~l~~A~~~~yav~Afn~-----~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~v 75 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGAFNF-----NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS---IV 75 (282)
T ss_pred HHHHHHHHHHCCceEEEEEE-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC---CC
Confidence 45677889998875335655 5789999999999999876655442 223322 4567788888877763 16
Q ss_pred eEEEe-ecCCcchHHHHHHHHHHhCCCEE
Q 006969 283 VISTH-CQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 283 ~i~~H-~HND~GlAvANslaAv~aGA~~V 310 (623)
|+.+| .|-+ -+.....|+++|++.|
T Consensus 76 pv~lhlDH~~---~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 76 PVALHLDHGS---SYESCIKAIKAGFSSV 101 (282)
T ss_pred eEEEECCCCC---CHHHHHHHHHcCCCEE
Confidence 89988 5554 4677889999998865
No 310
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=84.07 E-value=18 Score=36.72 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEcccCCCCCCHHHHHHHHHHHH
Q 006969 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVI 244 (623)
Q Consensus 166 ~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~-V~f~~eda~r~d~e~l~~~~~~~~ 244 (623)
++-++....+|.++|.+-.- + -..+.+.++++|++|++. |.++|+ |+.+.+..++..+
T Consensus 74 ~~~i~~fa~agad~It~H~E-~---------------~~~~~r~i~~Ik~~G~kaGv~lnP~----Tp~~~i~~~l~~v- 132 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAE-A---------------TEHIHRTIQLIKELGVKAGLVLNPA----TPLEALEPVLDDV- 132 (220)
T ss_pred HHHHHHHHHhCCCEEEEEec-c---------------CcCHHHHHHHHHHcCCeEEEEECCC----CCHHHHHHHHhhC-
Confidence 44444455568888876432 1 123446788999999863 678985 7778887777654
Q ss_pred HcCCcEEee----cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 245 KVGATTLNI----PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 245 ~aGa~~I~l----~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
|.|.+ |.--|-..-.++-+-|+.+|+..+...++.|+ =|-|.-..|+-.+..|||+.+
T Consensus 133 ----D~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~Ie----VDGGI~~~t~~~~~~AGad~~ 194 (220)
T COG0036 133 ----DLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIE----VDGGINLETIKQLAAAGADVF 194 (220)
T ss_pred ----CEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEE----EeCCcCHHHHHHHHHcCCCEE
Confidence 44433 45566666667888888888887641123444 488999999999999999995
No 311
>PRK08227 autoinducer 2 aldolase; Validated
Probab=83.75 E-value=34 Score=35.81 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=77.7
Q ss_pred hHHHHHHHHhcCCCCE--EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC-CCCHHHHHHHH
Q 006969 164 DIKTAWEAVKYAKRPR--IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEIL 240 (623)
Q Consensus 164 dI~~a~eal~~a~~~~--v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~-r~d~e~l~~~~ 240 (623)
+++.|++. |.+- +++|.. |+ ...+.++.+.+.++.|.+.|+..+.+.|.... ..+++++.-.+
T Consensus 99 sVeeAvrl----GAdAV~~~v~~G-s~---------~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aa 164 (264)
T PRK08227 99 DMEDAVRL----NACAVAAQVFIG-SE---------YEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLAT 164 (264)
T ss_pred cHHHHHHC----CCCEEEEEEecC-CH---------HHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHH
Confidence 46666664 5654 555554 33 23567889999999999999975544443111 23567888888
Q ss_pred HHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEee--c-CCcchHHHHHHHHHHhCCCEEEe
Q 006969 241 GEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC--Q-NDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 241 ~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~--H-ND~GlAvANslaAv~aGA~~Vd~ 312 (623)
+.+.|.|||.|-..=| .+.+.+.++ ..| +|+-+=. . ++.. .+.-...|+++||..|..
T Consensus 165 RiaaELGADiVK~~y~-----~~~f~~vv~----a~~----vPVviaGG~k~~~~~-~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 165 RIAAEMGAQIIKTYYV-----EEGFERITA----GCP----VPIVIAGGKKLPERD-ALEMCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHHcCCEEecCCC-----HHHHHHHHH----cCC----CcEEEeCCCCCCHHH-HHHHHHHHHHcCCceeee
Confidence 9999999999876544 134555544 332 2333311 2 3332 578888999999998754
No 312
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=83.68 E-value=38 Score=35.90 Aligned_cols=202 Identities=16% Similarity=0.073 Sum_probs=112.7
Q ss_pred HHHHhHcCCCEEEEe---------cCCC---Chh-HHHHHHHHHHHhccccccCCCccceEE----eecccchhhHHHHH
Q 006969 107 ARQLAKLGVDIIEAG---------FPAA---SKE-DFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 169 (623)
Q Consensus 107 a~~L~~~Gvd~IEvG---------fP~~---s~~-d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 169 (623)
|+.+.++|++.|=.+ +|-. +.+ -.+.+++|++.+.. |.+. |++. ...+.+.+
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~l---------Pv~aD~d~GyG~--~~~v~~tV 96 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSI---------PLIADIDTGFGN--AVNVHYVV 96 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCC---------CEEEECCCCCCC--cHHHHHHH
Confidence 566678899988774 3421 112 24666777764321 3222 2332 22577777
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHH----hC-CCHHHHHHHHHHHHHHHHHcCCCeEEEcc-cCCC--CCCHHHHHHHHH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHK----LR-KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG--RSDRKFLYEILG 241 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~----l~-~t~ee~l~~~~~~v~~ak~~G~~~V~f~~-eda~--r~d~e~l~~~~~ 241 (623)
+.+..+|+..|+|-..+++-++-+. -. .+.++..++++.+.+. + .+.+ +.+.+ -|+. ....+..++=++
T Consensus 97 ~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d-~~I~ARTDa~~~~~g~deAI~Ra~ 173 (290)
T TIGR02321 97 PQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRD-FVVIARVEALIAGLGQQEAVRRGQ 173 (290)
T ss_pred HHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCC-EEEEEEeccccccCCHHHHHHHHH
Confidence 7777789999999887766432211 11 3677777777666444 2 3333 22222 1332 234567777788
Q ss_pred HHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH-HHHHHHHHHhC-CCEEEeccCCccC
Q 006969 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGACAG-ARQVEVTINGIGE 319 (623)
Q Consensus 242 ~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlA-vANslaAv~aG-A~~Vd~Tv~GlGE 319 (623)
+..++|||.|.++= +..+|+++.++++.+.. | +|+-+.. ..+-. .+.. .-+.| ... .+....-=
T Consensus 174 aY~eAGAD~ifv~~--~~~~~~ei~~~~~~~~~--p----~pv~~~~--~~~p~~~~~~--l~~lg~~~~--v~~g~~~~ 239 (290)
T TIGR02321 174 AYEEAGADAILIHS--RQKTPDEILAFVKSWPG--K----VPLVLVP--TAYPQLTEAD--IAALSKVGI--VIYGNHAI 239 (290)
T ss_pred HHHHcCCCEEEecC--CCCCHHHHHHHHHhcCC--C----CCeEEec--CCCCCCCHHH--HHHhcCCcE--EEEChHHH
Confidence 99999999999842 34678888888776532 1 3343322 11111 1222 33445 454 33333334
Q ss_pred ccCcccHHHHHHHHHhc
Q 006969 320 RAGNASLEEVVMAFKCR 336 (623)
Q Consensus 320 RaGNa~lEevv~~L~~~ 336 (623)
|+-...+++.+..+...
T Consensus 240 ~aa~~a~~~~~~~i~~~ 256 (290)
T TIGR02321 240 RAAVGAVREVFARIRRD 256 (290)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 66666677766666643
No 313
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=83.62 E-value=1.4e+02 Score=37.97 Aligned_cols=213 Identities=15% Similarity=0.107 Sum_probs=114.9
Q ss_pred CCHHHHHHH----HHHHhHcCCCEEEEe-cCCCChhHHHHH-HHHHHHhccccccCCCccceEEe-ec-----ccc-hhh
Q 006969 98 LTSKEKLDI----ARQLAKLGVDIIEAG-FPAASKEDFEAV-RTIAKEVGNAVDAESGYVPVICG-LS-----RCN-ERD 164 (623)
Q Consensus 98 ~t~e~Kl~I----a~~L~~~Gvd~IEvG-fP~~s~~d~e~v-~~i~~~~~~~~~~~~~l~~~i~~-~~-----r~~-~~d 164 (623)
++.++-.+. ++.|.+.|||.|=+- +|. -.+..++ ..+.+.....-. . .|.++. ++ |.. =.+
T Consensus 141 ~t~del~~~y~eq~~~L~~~GvD~iliETi~d--~~EakAal~a~~~~~~~~~~---~-lPv~vS~~~~d~~Gr~~~G~~ 214 (1178)
T TIGR02082 141 VTYDELVDAYTEQAKGLLDGGVDLLLIETCFD--TLNAKAALFAAETVFEEKGR---E-LPIMISGTIVDTSGRTLSGQT 214 (1178)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeccCC--HHHHHHHHHHHHHHHhhcCC---C-CeEEEEEEEECCCCeeCCCCc
Confidence 566666655 677888999987664 342 2233222 222221100000 1 244444 22 111 135
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc-------CCCCCCHHHHH
Q 006969 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-------DAGRSDRKFLY 237 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e-------da~r~d~e~l~ 237 (623)
++.++..+...+.+.|.+-++..+-++ .. .++.+....-..+.+.|- ..+..+|+.+.
T Consensus 215 ~~~~~~~l~~~~~~avGlNCs~gP~~m-----------~~----~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a 279 (1178)
T TIGR02082 215 IEAFLTSLEHAGIDMIGLNCALGPDEM-----------RP----HLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELA 279 (1178)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHH-----------HH----HHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHH
Confidence 778888887788888887666554333 22 223222221112443321 13345788888
Q ss_pred HHHHHHHHc-CCcEEeecCcccccCHHHHHHHHHHHHHhCCCCc-----c------eeEEEee----------c------
Q 006969 238 EILGEVIKV-GATTLNIPDTVGITMPTEFGKLIADIKANTPGIE-----N------VVISTHC----------Q------ 289 (623)
Q Consensus 238 ~~~~~~~~a-Ga~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~-----~------v~i~~H~----------H------ 289 (623)
+.++...+. |+..|.=|= ..+|+.++.+-+.++..-|... . -++.+.. =
T Consensus 280 ~~~~~~~~~ggv~IIGGCC---GTtPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k 356 (1178)
T TIGR02082 280 KALADFAAEGGLNIVGGCC---GTTPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSK 356 (1178)
T ss_pred HHHHHHHHhCCCcEEEecC---CCCHHHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhH
Confidence 888888877 588765221 3489999998888865333210 0 0011110 0
Q ss_pred --------CCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 290 --------NDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 290 --------ND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
.|.--++.-+..-+++||+.||+... ..+..+-..++.++..|..
T Consensus 357 ~~~~~i~~~d~~~a~~~A~~qve~GA~iIDVn~~-~~~vd~~eem~rvv~~i~~ 409 (1178)
T TIGR02082 357 KFRRLIIAEDYDEALDIAKQQVENGAQILDINVD-YGMLDGVAAMKRFLNLLAS 409 (1178)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHh
Confidence 23335666677778999999999863 4444444555556666553
No 314
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=83.59 E-value=7.2 Score=42.73 Aligned_cols=89 Identities=21% Similarity=0.176 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc-------cccCHHHHHHHHHHHHHhC
Q 006969 204 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-------GITMPTEFGKLIADIKANT 276 (623)
Q Consensus 204 ~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv-------G~~~P~~v~~li~~l~~~~ 276 (623)
+.+.+.++.+|+.+.. |-+ |.++....++++.+.++|++.|.+-.|+ |...|..+.++++. +
T Consensus 119 ~l~~~ii~~vr~a~Vt-vki------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~----~ 187 (369)
T TIGR01304 119 ELLGERIAEVRDSGVI-TAV------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE----L 187 (369)
T ss_pred HHHHHHHHHHHhcceE-EEE------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH----C
Confidence 4556677777777642 333 2244577799999999999999987653 45667766666554 3
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 277 ~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
+ +|+- + .+ -.....++.++++||+.|.
T Consensus 188 ~----IPVI-~--G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 188 D----VPVI-A--GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred C----CCEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence 2 3453 2 33 3345667888999999987
No 315
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.37 E-value=23 Score=36.99 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEee----cCccc----ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcc--hHHHHHH
Q 006969 231 SDRKFLYEILGEVIKVGATTLNI----PDTVG----ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLG--LSTANTI 300 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l----~DTvG----~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~G--lAvANsl 300 (623)
.+++.+.+.++.+.++|++.|.| |.+.+ .-.|..+.++++.+++.+. +||.+-.=-+.. -...-+.
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~----~pv~vKl~~~~~~~~~~~~a~ 183 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVD----IPLLVKLSPYFDLEDIVELAK 183 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccC----CCEEEEeCCCCCHHHHHHHHH
Confidence 47788889999999999987765 22222 2368899999999998762 455555332222 2344455
Q ss_pred HHHHhCCCEEEeccCCccCc
Q 006969 301 AGACAGARQVEVTINGIGER 320 (623)
Q Consensus 301 aAv~aGA~~Vd~Tv~GlGER 320 (623)
.+.++||+.|.++ ++.+++
T Consensus 184 ~l~~~Gad~i~~~-~~~~~~ 202 (289)
T cd02810 184 AAERAGADGLTAI-NTISGR 202 (289)
T ss_pred HHHHcCCCEEEEE-cccCcc
Confidence 6778999999764 444333
No 316
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=83.32 E-value=61 Score=37.46 Aligned_cols=128 Identities=18% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcc-----ccccCCCccceEE-------eecccch--
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGN-----AVDAESGYVPVIC-------GLSRCNE-- 162 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~-----~~~~~~~l~~~i~-------~~~r~~~-- 162 (623)
...++.-++=+..|.++|.+++=+..| +.++.+.++.|.+.+.. .+..|.-+.++++ .-.|-|+
T Consensus 41 T~D~~atv~Qi~~L~~aGceiVRvtvp--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINPGN 118 (606)
T PRK00694 41 TTDVDGTVRQICALQEWGCDIVRVTVQ--GLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVADFVDKVRINPGN 118 (606)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHHHhcCceEECCcc
Confidence 345666677788899999999999887 35677788887775211 1111101111110 0001111
Q ss_pred --------------------------hhHHHHHHHHhcCCCC-EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 006969 163 --------------------------RDIKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS 215 (623)
Q Consensus 163 --------------------------~dI~~a~eal~~a~~~-~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~ 215 (623)
+-+..-++.-++.+++ ||.+--.+-+-.+..++|-|++..++-+.+.++.+.+
T Consensus 119 i~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~ 198 (606)
T PRK00694 119 YVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEK 198 (606)
T ss_pred cCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1222233444555666 5666533334466667888999999999999999999
Q ss_pred cCCCeEEEccc
Q 006969 216 LGCDDVEFSPE 226 (623)
Q Consensus 216 ~G~~~V~f~~e 226 (623)
+|+..+.||.-
T Consensus 199 ~~f~diviS~K 209 (606)
T PRK00694 199 LDYRDVVFSMK 209 (606)
T ss_pred CCCCcEEEEEE
Confidence 99988888874
No 317
>PRK12677 xylose isomerase; Provisional
Probab=83.24 E-value=12 Score=41.32 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.9
Q ss_pred HHHHHHHHhHcCCCEEEEe
Q 006969 103 KLDIARQLAKLGVDIIEAG 121 (623)
Q Consensus 103 Kl~Ia~~L~~~Gvd~IEvG 121 (623)
-.++++.+.++|++.||+.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh 51 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFH 51 (384)
T ss_pred HHHHHHHHHHhCCCEEEec
Confidence 4566788899999999997
No 318
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=83.23 E-value=48 Score=32.86 Aligned_cols=174 Identities=14% Similarity=0.077 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec---CC--CChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGF---PA--ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGf---P~--~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 171 (623)
.++...-.+.++.+.+.|++.|+++. +. .++-..+.++.+.+..... + .+.-+.. |...-++.
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~------~--~v~l~v~----d~~~~i~~ 79 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLP------L--DVHLMVE----NPDRYVPD 79 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCc------E--EEEeeeC----CHHHHHHH
Confidence 44555566788999999999999963 11 1122345667766532100 0 1111111 22222233
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
+..+|.+.|.+....++ ...+.++.+++.|+. +.+... ..++.+.+.++. .+++.|
T Consensus 80 ~~~~g~d~v~vh~~~~~----------------~~~~~~~~~~~~~~~-~g~~~~--~~t~~e~~~~~~-----~~~d~i 135 (220)
T PRK05581 80 FAKAGADIITFHVEASE----------------HIHRLLQLIKSAGIK-AGLVLN--PATPLEPLEDVL-----DLLDLV 135 (220)
T ss_pred HHHcCCCEEEEeeccch----------------hHHHHHHHHHHcCCE-EEEEEC--CCCCHHHHHHHH-----hhCCEE
Confidence 34568888655443221 223457888889875 444331 124444443332 235544
Q ss_pred ee----cCcccccCHHHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 252 NI----PDTVGITMPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 252 ~l----~DTvG~~~P~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.+ +-+.|...++...+.++.+++..+... +.++. =+.|.-..|.-...++|++.|
T Consensus 136 ~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~----v~GGI~~~nv~~l~~~GaD~v 195 (220)
T PRK05581 136 LLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIE----VDGGINADNIKECAEAGADVF 195 (220)
T ss_pred EEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEE----EECCCCHHHHHHHHHcCCCEE
Confidence 33 334444445556667777765543100 01121 135888888888888998876
No 319
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=83.22 E-value=34 Score=34.23 Aligned_cols=170 Identities=19% Similarity=0.132 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhH----HHHHHHHhc
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI----KTAWEAVKY 174 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI----~~a~eal~~ 174 (623)
+.++-+++++.+.+. ++.||+|+|-....-.+.++.|.+.. . +.+.-+-+ .|| ....+....
T Consensus 9 ~~~~a~~~~~~~~~~-v~~iKig~~l~~~~G~~~v~~l~~~~-~---------~v~lD~K~---~Dig~t~~~~~~~~~~ 74 (213)
T TIGR01740 9 TKDEALDLADSLGPE-IEVIKVGIDLLLDGGDKIIDELAKLN-K---------LIFLDLKF---ADIPNTVKLQYESKIK 74 (213)
T ss_pred CHHHHHHHHHhcCCc-CcEEEECHHHHHhcCHHHHHHHHHcC-C---------CEEEEEee---cchHHHHHHHHHHHHh
Confidence 456666666555332 89999998643222236777777641 1 22333222 233 233444556
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-----cccC-CCCCCH-HHHHHHHHHHHHcC
Q 006969 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-----SPED-AGRSDR-KFLYEILGEVIKVG 247 (623)
Q Consensus 175 a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-----~~ed-a~r~d~-e~l~~~~~~~~~aG 247 (623)
.|++.+.+...... +++..+++++++.|.. +.. ++.. ...... +.++++++.+.+.|
T Consensus 75 ~gad~vTvh~~~g~---------------~~l~~~~~~~~~~~~~-v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g 138 (213)
T TIGR01740 75 QGADMVNVHGVAGS---------------ESVEAAKEAASEGGRG-LLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFG 138 (213)
T ss_pred cCCCEEEEcCCCCH---------------HHHHHHHHHhhcCCCe-EEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcC
Confidence 78898876544332 3455667777776643 221 2210 012222 56677777777777
Q ss_pred CcEEeecCcccccCHHHHHHHHHHHH---HhCCCCcceeEEEeec-CCcchHHHHHHHHHHhCCCEE
Q 006969 248 ATTLNIPDTVGITMPTEFGKLIADIK---ANTPGIENVVISTHCQ-NDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 248 a~~I~l~DTvG~~~P~~v~~li~~l~---~~~~~~~~v~i~~H~H-ND~GlAvANslaAv~aGA~~V 310 (623)
.+.+. +.|+++..+=+... --.|+ |+.-.= .+----++|.-.+.++||+.+
T Consensus 139 ~~g~v-------~~~~~~~~ir~~~~~~~~vtPG-----I~~~g~~~~dq~~~~~~~~~~~~Gad~i 193 (213)
T TIGR01740 139 LDGPV-------CSAEEAKEIRKFTGDFLILTPG-----IRLQSKGADDQQRVVTLEDAKEAGADVI 193 (213)
T ss_pred CeEEE-------eCHHHHHHHHHhcCCceEEeCC-----cCCCCCCcCCccccCCHHHHHHcCCCEE
Confidence 65442 45665544322211 11243 222221 222344678888999999976
No 320
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=83.16 E-value=24 Score=38.67 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc-CC-cEEeecCcccccCHHH
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GA-TTLNIPDTVGITMPTE 264 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a-Ga-~~I~l~DTvG~~~P~~ 264 (623)
+.+.++.+.+.|.+.|.++= ..+...|+.+.++++.+.+. +. -.+-.=|+.|.++-.-
T Consensus 147 l~~~~~~~~~~Ga~~I~l~D-T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~ 206 (378)
T PRK11858 147 LIEFAKAAEEAGADRVRFCD-TVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANA 206 (378)
T ss_pred HHHHHHHHHhCCCCEEEEec-cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHH
Confidence 34455555566665444432 24556666666666666543 21 1333446777665443
No 321
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=83.12 E-value=55 Score=33.05 Aligned_cols=101 Identities=23% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCcccccCH---HHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhC
Q 006969 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMP---TEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P---~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANslaAv~aG 306 (623)
.+.+--..-++.+++.||+.|-+.=-.|.+.. ..+.+-++.+++...+.. +++++...=+|.-.. --+..++++|
T Consensus 67 ~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~-~a~~ia~eaG 145 (211)
T TIGR00126 67 STTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIR-KACEICIDAG 145 (211)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHH-HHHHHHHHhC
Confidence 33343334456778899999888877886555 556666666666543321 455555443333333 4566899999
Q ss_pred CCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 307 ARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 307 A~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
|+.|-++-+ .+ .+++.+|++-...+.
T Consensus 146 ADfvKTsTG-f~--~~gat~~dv~~m~~~ 171 (211)
T TIGR00126 146 ADFVKTSTG-FG--AGGATVEDVRLMRNT 171 (211)
T ss_pred CCEEEeCCC-CC--CCCCCHHHHHHHHHH
Confidence 999999833 22 355888876554444
No 322
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=83.12 E-value=12 Score=40.13 Aligned_cols=85 Identities=25% Similarity=0.341 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCcEEeecC-cccccCHHHHHHHHH--------HHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 006969 234 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLIA--------DIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~D-TvG~~~P~~v~~li~--------~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 304 (623)
+++.+++++.+++||+.+.+.| +.+.+.|+++.+++. .+++..++ .++ +|.|.+.. +-+..+.
T Consensus 180 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~---~~i-lh~cg~~~----~~~~~~~ 251 (338)
T TIGR01464 180 DATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPN---VPV-ILFAKGAG----HLLEELA 251 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC---CCE-EEEeCCcH----HHHHHHH
Confidence 4556777777889999999999 677889988886653 34433222 345 44433322 3344333
Q ss_pred -hCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 305 -AGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 305 -aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
.|++.+..- . +.++.+....+.
T Consensus 252 ~~~~~~~s~d-----~---~~dl~e~~~~~~ 274 (338)
T TIGR01464 252 ETGADVVGLD-----W---TVDLKEARKRVG 274 (338)
T ss_pred hcCCCEEEeC-----C---CCCHHHHHHHhC
Confidence 488776332 2 257777655554
No 323
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=82.99 E-value=13 Score=40.93 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=83.2
Q ss_pred CCCEEEEe--cCCCC-hhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHH-HHHHHHhcCCCCEEEEEecCCH
Q 006969 114 GVDIIEAG--FPAAS-KEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATSG 188 (623)
Q Consensus 114 Gvd~IEvG--fP~~s-~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~eal~~a~~~~v~i~~~~Sd 188 (623)
+++.|=+| -|..- ++.. +.++.|.+..+.. .+ ..+..- ++++.+. .-++.++.+|+.+|.+-+-+.+
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~--~~----~eit~E--~~P~~lt~e~l~~l~~~GvnrislGvQS~~ 137 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIA--PD----AEISLE--IDPGTFDLEQLQGYRSLGVNRVSLGVQAFQ 137 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--CC----CEEEEE--eCCCcCCHHHHHHHHHCCCCEEEEEcccCC
Confidence 57777775 47643 3333 3344444432111 10 234333 2444443 2356778889999999887777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC-CCCHHHHHHHHHHHHHcCCcEEee
Q 006969 189 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 189 ~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~-r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
-.....+|+.. ..+.+.++++.+++.|++.|.++...+- .-+.+.+.+.++.+.+.+++.|.+
T Consensus 138 d~~L~~l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~ 201 (400)
T PRK07379 138 DELLALCGRSH--RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSC 201 (400)
T ss_pred HHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 77878887753 2456677899999999875655554332 346788889999999999988876
No 324
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=82.98 E-value=14 Score=39.24 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=66.6
Q ss_pred HhCCCHHHHHHHHHHHHHHHH-HcCCCeEEEcccCCCC-CCHHHHHHHHHHHHHcCCc---EEeecCcccccCHHHHHHH
Q 006969 194 KLRKTKQQVVEIARSMVKFAR-SLGCDDVEFSPEDAGR-SDRKFLYEILGEVIKVGAT---TLNIPDTVGITMPTEFGKL 268 (623)
Q Consensus 194 ~l~~t~ee~l~~~~~~v~~ak-~~G~~~V~f~~eda~r-~d~e~l~~~~~~~~~aGa~---~I~l~DTvG~~~P~~v~~l 268 (623)
..+.+.++.++.+.+.++.++ +.|+. +.+... +.+ .+++.+.+.++.+.+.+.+ .+.++..-....++++..+
T Consensus 101 ~~~~~~~~~~~~~~~ai~~~~~~~gi~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~ 178 (325)
T cd01320 101 RRGLSFDEVVEAVLRGLDEAEAEFGIK-ARLILC-GLRHLSPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRA 178 (325)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEEE-ecCCCCHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHH
Confidence 457889999998888887764 55764 444321 122 3567777777777665444 3333322223367888888
Q ss_pred HHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH-hCCCE
Q 006969 269 IADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC-AGARQ 309 (623)
Q Consensus 269 i~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~-aGA~~ 309 (623)
+...++. ++++.+|+.-+.+ ..+...|++ +|+++
T Consensus 179 ~~~A~~~-----g~~v~~H~~E~~~--~~~~~~a~~~~g~~~ 213 (325)
T cd01320 179 FQRAREA-----GLRLTAHAGEAGG--PESVRDALDLLGAER 213 (325)
T ss_pred HHHHHHC-----CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence 8888874 2568888876533 234456676 78764
No 325
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=82.94 E-value=13 Score=39.22 Aligned_cols=162 Identities=20% Similarity=0.171 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE--ecCCCC---------hhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEA--GFPAAS---------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEv--GfP~~s---------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (623)
.+.++-.++++.+.+.|+|.||+ |.|... -+|.+.+..+.+.+...+. .|..+= .|....++.
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-----~Pv~vK-l~~~~~~~~ 183 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-----IPVIAK-LTPNITDIR 183 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-----CCeEEE-CCCCchhHH
Confidence 38899999999999999999999 445420 0344556655554432210 122211 233334555
Q ss_pred HHHHHHhcCCCCEEEEEecCCH---H-----------HHHHHh-CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCC
Q 006969 167 TAWEAVKYAKRPRIHTFIATSG---I-----------HMEHKL-RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRS 231 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd---~-----------h~~~~l-~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~ 231 (623)
.-.+.+.++|++.|.++..... + |-.... +.|-........+.|..+++.-...+-+-. .++=.
T Consensus 184 ~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig-~GGI~ 262 (299)
T cd02940 184 EIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISG-IGGIE 262 (299)
T ss_pred HHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEE-ECCCC
Confidence 5555566779998887654432 1 111001 222222233344555555553200121211 35556
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHH
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIA 270 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~ 270 (623)
+.+.+.+++ .+||+.+-++=-.-.--|.-+.++.+
T Consensus 263 ~~~da~~~l----~aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 263 SWEDAAEFL----LLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred CHHHHHHHH----HcCCChheEceeecccCCcHHHHHhh
Confidence 666665544 38999888875554445666666554
No 326
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=82.92 E-value=10 Score=43.28 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv 314 (623)
.+.+++++++|++.|.| |+.-..++. ..+.|+++++.+|+ ++|.. -...-...+..++++||+.|.+++
T Consensus 243 ~~~~~~l~~ag~d~i~i-d~a~G~s~~-~~~~i~~ik~~~~~---~~v~a----G~V~t~~~a~~~~~aGad~I~vg~ 311 (495)
T PTZ00314 243 IERAAALIEAGVDVLVV-DSSQGNSIY-QIDMIKKLKSNYPH---VDIIA----GNVVTADQAKNLIDAGADGLRIGM 311 (495)
T ss_pred HHHHHHHHHCCCCEEEE-ecCCCCchH-HHHHHHHHHhhCCC---ceEEE----CCcCCHHHHHHHHHcCCCEEEECC
Confidence 68899999999999988 554434444 46789999999884 56765 223334688899999999998754
No 327
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.91 E-value=21 Score=36.31 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=17.5
Q ss_pred HHHHHHHhHcCCCEEEEecCCC
Q 006969 104 LDIARQLAKLGVDIIEAGFPAA 125 (623)
Q Consensus 104 l~Ia~~L~~~Gvd~IEvGfP~~ 125 (623)
.+.++.+.+.|++.|-+..+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC
Confidence 5568888889999999977654
No 328
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=82.75 E-value=6.9 Score=35.41 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCeEEE-cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEE
Q 006969 208 SMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST 286 (623)
Q Consensus 208 ~~v~~ak~~G~~~V~f-~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~ 286 (623)
+-++.+++.|++.|.- -| |.-..+.-...++.+++.++|-..+.||=+.|-.+++.+..+.+.+.+ .|+ |+-+
T Consensus 18 ~d~~~la~~GfktVInlRp-d~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~----Pvl~ 91 (110)
T PF04273_consen 18 EDLAQLAAQGFKTVINLRP-DGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK----PVLA 91 (110)
T ss_dssp HHHHHHHHCT--EEEE-S--TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT----SEEE
T ss_pred HHHHHHHHCCCcEEEECCC-CCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC----CEEE
Confidence 3456777899986543 33 332323223445667778899999999999999999999998887776 453 6888
Q ss_pred eecCCc
Q 006969 287 HCQNDL 292 (623)
Q Consensus 287 H~HND~ 292 (623)
||.-..
T Consensus 92 hC~sG~ 97 (110)
T PF04273_consen 92 HCRSGT 97 (110)
T ss_dssp E-SCSH
T ss_pred ECCCCh
Confidence 887543
No 329
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.58 E-value=65 Score=33.52 Aligned_cols=129 Identities=22% Similarity=0.196 Sum_probs=74.4
Q ss_pred HHHhcCCCCEEEEEecCCH-------HHH----HHHhCCCHHHHHHHHHHHHHHHHH--cCCCeEE---EcccCCCCCCH
Q 006969 170 EAVKYAKRPRIHTFIATSG-------IHM----EHKLRKTKQQVVEIARSMVKFARS--LGCDDVE---FSPEDAGRSDR 233 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd-------~h~----~~~l~~t~ee~l~~~~~~v~~ak~--~G~~~V~---f~~eda~r~d~ 233 (623)
.++...|++.|-+=+|-|| ++. .-+-|.+.++.++.+.+ .|+ .....|. |++. .+.-
T Consensus 33 ~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~----~r~~~~~~p~vlm~Y~N~i--~~~G- 105 (258)
T PRK13111 33 KALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE----IREKDPTIPIVLMTYYNPI--FQYG- 105 (258)
T ss_pred HHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH----HHhcCCCCCEEEEecccHH--hhcC-
Confidence 3445568888888778777 221 11235676666665544 442 2333221 1321 1222
Q ss_pred HHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
+.++++.+.++|++.+.++| +.|++..+++..++++ +++ +.+=|=.+.--.-...+++...|.-++ .+
T Consensus 106 --~e~f~~~~~~aGvdGviipD----Lp~ee~~~~~~~~~~~--gl~---~I~lvap~t~~eri~~i~~~s~gfIY~-vs 173 (258)
T PRK13111 106 --VERFAADAAEAGVDGLIIPD----LPPEEAEELRAAAKKH--GLD---LIFLVAPTTTDERLKKIASHASGFVYY-VS 173 (258)
T ss_pred --HHHHHHHHHHcCCcEEEECC----CCHHHHHHHHHHHHHc--CCc---EEEEeCCCCCHHHHHHHHHhCCCcEEE-Ee
Confidence 23577888899999999998 5688999999999875 222 333344444444555566665554333 36
Q ss_pred cCCc
Q 006969 314 INGI 317 (623)
Q Consensus 314 v~Gl 317 (623)
+.|.
T Consensus 174 ~~Gv 177 (258)
T PRK13111 174 RAGV 177 (258)
T ss_pred CCCC
Confidence 6664
No 330
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=82.54 E-value=13 Score=39.22 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC---CcEEeecCcc--------cccCHHHHHHHHHHHHH
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTV--------GITMPTEFGKLIADIKA 274 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG---a~~I~l~DTv--------G~~~P~~v~~li~~l~~ 274 (623)
..++|+.++..|.. +.+. .+|-....+..+.+.++.+| .+++.|.|++ -+..++.+.+.|+.+|+
T Consensus 110 T~~~V~~~~~~~~~-~~I~---~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~ 185 (284)
T PRK06096 110 LAQMLALLRERYPD-GNIA---CTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRR 185 (284)
T ss_pred HHHHHHHHHhhCCC-cEEE---ecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHH
Confidence 45667777765543 3332 23555556667778888886 4799999998 11113458889999999
Q ss_pred hCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcc---cccccccccCCChh
Q 006969 275 NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRG---EHILGGLYTGINTR 351 (623)
Q Consensus 275 ~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~---~~~~~G~~t~idl~ 351 (623)
..|.. ++.++ +- -+.-+.+|+++||+.|.. .|-+.|++-....... ....--..-||+++
T Consensus 186 ~~~~~-kIeVE--v~-----tleqa~ea~~agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ 248 (284)
T PRK06096 186 HAPEK-KIVVE--AD-----TPKEAIAALRAQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLN 248 (284)
T ss_pred hCCCC-CEEEE--CC-----CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHH
Confidence 88753 24455 43 366678899999999987 7888888766665421 11111245689988
Q ss_pred HHHHHH
Q 006969 352 HIVMAS 357 (623)
Q Consensus 352 ~L~~~s 357 (623)
.+.+.+
T Consensus 249 ni~~yA 254 (284)
T PRK06096 249 TLKNYA 254 (284)
T ss_pred HHHHHH
Confidence 877665
No 331
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=82.46 E-value=30 Score=37.41 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=59.5
Q ss_pred HHhcCCCCEEEEEec--------CCHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEcccCCC--CCCHH
Q 006969 171 AVKYAKRPRIHTFIA--------TSGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDAG--RSDRK 234 (623)
Q Consensus 171 al~~a~~~~v~i~~~--------~Sd~--h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~---~V~f~~eda~--r~d~e 234 (623)
..+.+|.+.|.|-.+ .|+. ++...+|=+.++-.+.+.+.++.+|+. |.+ .+.+++.|.. -.+++
T Consensus 149 ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~ 228 (343)
T cd04734 149 RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPD 228 (343)
T ss_pred HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHH
Confidence 345689999877664 1443 344557778888888888888888876 433 2456765432 24678
Q ss_pred HHHHHHHHHHHcC-CcEEee
Q 006969 235 FLYEILGEVIKVG-ATTLNI 253 (623)
Q Consensus 235 ~l~~~~~~~~~aG-a~~I~l 253 (623)
...++++.+.++| +|.|.+
T Consensus 229 e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 229 EALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred HHHHHHHHHHhcCCCCEEEe
Confidence 8889999999998 899988
No 332
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=82.42 E-value=25 Score=37.70 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCChhH-----HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKED-----FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d-----~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.+.++-.++++.+.++|+|.||+-. |...+.. .+.+.++.+.+...+ -+|.++=+. ....++....+
T Consensus 109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-----~iPv~vKl~-p~~~~~~~~a~ 182 (325)
T cd04739 109 VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-----TIPVAVKLS-PFFSALAHMAK 182 (325)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-----CCCEEEEcC-CCccCHHHHHH
Confidence 4678889999999999999999964 2222211 122333333322211 023332222 23345555556
Q ss_pred HHhcCCCCEEEEEecCCH--HHHH-----HHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCHHHHHHHHHH
Q 006969 171 AVKYAKRPRIHTFIATSG--IHME-----HKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYEILGE 242 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd--~h~~-----~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~e~l~~~~~~ 242 (623)
++.++|++.|.+...... ++.+ ...+.|-......+.+.++.+++. .+. |. . .++=.+.+.+.+.+
T Consensus 183 ~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip-Ii--g-~GGI~s~~Da~e~l-- 256 (325)
T cd04739 183 QLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS-LA--A-SGGVHDAEDVVKYL-- 256 (325)
T ss_pred HHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC-EE--E-ECCCCCHHHHHHHH--
Confidence 667789998887665411 1110 011222222333445556665543 232 22 1 35556777666655
Q ss_pred HHHcCCcEEeecCcccccCHHHHHHHHHHHHHhC
Q 006969 243 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 243 ~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~ 276 (623)
.+||+.+-++-.+=.--|.-+.++.+.|.+.+
T Consensus 257 --~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l 288 (325)
T cd04739 257 --LAGADVVMTTSALLRHGPDYIGTLLAGLEAWM 288 (325)
T ss_pred --HcCCCeeEEehhhhhcCchHHHHHHHHHHHHH
Confidence 37999999984432224777777777776543
No 333
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=82.39 E-value=14 Score=38.82 Aligned_cols=129 Identities=11% Similarity=0.136 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC---CcEEeecCc----------ccccCHHHHHHHHHHH
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDT----------VGITMPTEFGKLIADI 272 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG---a~~I~l~DT----------vG~~~P~~v~~li~~l 272 (623)
..++|+.+++.+.. +.+. .+|-....+..+.+.++.+| .+++.|.|+ .|. +..+.+.++.+
T Consensus 109 T~~~V~~~~~~~~~-~~I~---~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~--~~~i~~av~~~ 182 (277)
T TIGR01334 109 THKMVTLAKKISPM-AVVA---CTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLND--NFDWGGAIGRL 182 (277)
T ss_pred HHHHHHHHHhcCCC-CEEE---ecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCC--cccHHHHHHHH
Confidence 45677777765543 3332 23544455667777778876 479999999 232 24688999999
Q ss_pred HHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcc---cccccccccCCC
Q 006969 273 KANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRG---EHILGGLYTGIN 349 (623)
Q Consensus 273 ~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~---~~~~~G~~t~id 349 (623)
|+..|.. ++.+++ . -..-+.+|+++|++.|..= |.+.|++........ ....--..-||+
T Consensus 183 r~~~~~~-kIeVEv--~-----tleea~ea~~~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leasGGI~ 245 (277)
T TIGR01334 183 KQTAPER-KITVEA--D-----TIEQALTVLQASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAAGGIN 245 (277)
T ss_pred HHhCCCC-CEEEEC--C-----CHHHHHHHHHcCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 9988753 345554 3 4677889999999998665 788888777666531 111113456899
Q ss_pred hhHHHHHH
Q 006969 350 TRHIVMAS 357 (623)
Q Consensus 350 l~~L~~~s 357 (623)
++.+.+.+
T Consensus 246 ~~ni~~ya 253 (277)
T TIGR01334 246 PENIADYI 253 (277)
T ss_pred HHHHHHHH
Confidence 98887665
No 334
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=82.39 E-value=43 Score=31.29 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhHcCCCEEEEe--cCCCChhHHHHHHHHHHHhccccccCCCccceEEeeccc---chhhHHHHHHHHhcC
Q 006969 101 KEKLDIARQLAKLGVDIIEAG--FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC---NERDIKTAWEAVKYA 175 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~---~~~dI~~a~eal~~a 175 (623)
++..+++......|+..|-.+ .|...+.-.+.++.+.+... ++ .+...+.. .++.+ +.+..+
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~ggep~~~~~~~~~i~~~~~~~~-------~~--~~~i~T~~~~~~~~~~----~~l~~~ 97 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGGEPLLYPELAELLRRLKKELP-------GF--EISIETNGTLLTEELL----KELKEL 97 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCcCCccHhHHHHHHHHHhhCC-------Cc--eEEEEcCcccCCHHHH----HHHHhC
Confidence 677888888888899888885 46555533456666665421 11 22223322 23344 344555
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc-CCCCCCHHHHHHHHHHHHHcC-CcEE
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSDRKFLYEILGEVIKVG-ATTL 251 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e-da~r~d~e~l~~~~~~~~~aG-a~~I 251 (623)
|...|.+.+-+.+-.....++. ....++...+.++.+++.|+. +..... .....+.+.+.+.++.+.+.+ ++.+
T Consensus 98 g~~~i~i~le~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (204)
T cd01335 98 GLDGVGVSLDSGDEEVADKIRG-SGESFKERLEALKELREAGLG-LSTTLLVGLGDEDEEDDLEELELLAEFRSPDRV 173 (204)
T ss_pred CCceEEEEcccCCHHHHHHHhc-CCcCHHHHHHHHHHHHHcCCC-ceEEEEEecCCChhHHHHHHHHHHHhhcCcchh
Confidence 8888888877766555554431 112355666677777777764 322211 111222466777777777776 4433
No 335
>PRK07094 biotin synthase; Provisional
Probab=82.37 E-value=26 Score=37.15 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCc-ccccCHHHHHHHHHHHHHh
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDT-VGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DT-vG~~~P~~v~~li~~l~~~ 275 (623)
+++.+++.++.+.+.|++.|.|.+. ......+.+.++++.+++.
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~ 115 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE 115 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc
Confidence 4555556665555566666665421 1223345555666666554
No 336
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=82.34 E-value=37 Score=36.89 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=63.8
Q ss_pred chhhHH-HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHH
Q 006969 161 NERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 238 (623)
Q Consensus 161 ~~~dI~-~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~ 238 (623)
+++.+. .-++.++.+|+.+|.+-+-+.+-.+.+.+|+.. ..+.+.++++.+++.|+..|.++...+ ..-+.+.+.+
T Consensus 97 nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~--~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~ 174 (353)
T PRK05904 97 NPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTH--TIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDE 174 (353)
T ss_pred ccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHH
Confidence 445543 345677888999999987777767777887742 345677889999999975354443322 2356677888
Q ss_pred HHHHHHHcCCcEEee
Q 006969 239 ILGEVIKVGATTLNI 253 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l 253 (623)
.++.+.+.+++.|.+
T Consensus 175 tl~~~~~l~p~~is~ 189 (353)
T PRK05904 175 VFNFILKHKINHISF 189 (353)
T ss_pred HHHHHHhcCCCEEEE
Confidence 888888999887654
No 337
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=82.32 E-value=5.9 Score=42.54 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHc-CCcEEeecCcccc-----cCHHHHHHHHH----HHHHhCCCCcceeEEEeecCCcchHHHHHHHH-
Q 006969 234 KFLYEILGEVIKV-GATTLNIPDTVGI-----TMPTEFGKLIA----DIKANTPGIENVVISTHCQNDLGLSTANTIAG- 302 (623)
Q Consensus 234 e~l~~~~~~~~~a-Ga~~I~l~DTvG~-----~~P~~v~~li~----~l~~~~~~~~~v~i~~H~HND~GlAvANslaA- 302 (623)
+++.+.+++.+++ |++.|.+.|+.|. +.|+.+.+++. .+.+.+......++.+|+..+. .+-+..
T Consensus 155 d~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~----~~~l~~~ 230 (321)
T cd03309 155 DAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAA----ASLVPSM 230 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCc----HHHHHHH
Confidence 4566777777777 9999999998776 79998886652 3333332110246788887643 122333
Q ss_pred HHhCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 303 ACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 303 v~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
.+.|++.+.+-.. . .++.++...+.
T Consensus 231 ~e~g~dvl~~d~~-----~--~dl~eak~~~g 255 (321)
T cd03309 231 AEMGVDSWNVVMT-----A--NNTAELRRLLG 255 (321)
T ss_pred HHcCCCEEEecCC-----C--CCHHHHHHHhC
Confidence 4469988774322 1 36766654444
No 338
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=82.22 E-value=69 Score=33.54 Aligned_cols=206 Identities=14% Similarity=0.063 Sum_probs=115.2
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecC--CCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFP--AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP--~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
+..|-......+-+...++|+.....-.+ ...++..+.++.+... + +....+......-+..+++..
T Consensus 44 ~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~-~----------~daIiv~~~d~~~~~~~v~~a 112 (322)
T COG1879 44 GNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQ-G----------VDAIIINPVDPDALTPAVKKA 112 (322)
T ss_pred CChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHc-C----------CCEEEEcCCChhhhHHHHHHH
Confidence 44455555556777778889733333222 2223334445444322 1 111223333555566667777
Q ss_pred hcCCCCEEEEEecCCHH-HHHHHhCCCHHHH-HHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 173 KYAKRPRIHTFIATSGI-HMEHKLRKTKQQV-VEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~-h~~~~l~~t~ee~-l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
+.+|+++|.+-....+. ....-++.+..+. ......+++.....|. .+.+..........+...-+.+.+.+.+...
T Consensus 113 ~~aGIpVv~~d~~~~~~~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g~-v~~~~g~~~~~~~~~R~~G~~~~l~~~~~~~ 191 (322)
T COG1879 113 KAAGIPVVTVDSDIPGPGDRVAYVGSDNYKAGRLAAEYLAKALGGKGK-VVVLVGSPGNSSAEERVKGFRDALKEHPPDI 191 (322)
T ss_pred HHCCCcEEEEecCCCCCCceeEEEecCcHHHHHHHHHHHHHHhCCCCe-EEEEecCCCCchHHHHHhhHHHHHHhCCCcE
Confidence 77899988776554442 1211223322222 2223334444444442 3445443455555566666666666666657
Q ss_pred EeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCcc
Q 006969 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (623)
Q Consensus 251 I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlG 318 (623)
..+....|-..+.+-.+.+..+....|++ -++.++||-. +++-..+.-.+|-.. +.-+.|.+
T Consensus 192 ~v~~~~~~~~~~~~a~~~~~~~L~~~pdi----~~i~~~~d~~-a~ga~~A~~~~g~~~-~v~v~g~D 253 (322)
T COG1879 192 EVVDVQTGDWDRDKALEVMEDLLAANPDI----DGIYAANDGM-ALGAIQALKAAGRKG-DVVVVGFD 253 (322)
T ss_pred EEeeccCCcccHHHHHHHHHHHHHhCCCc----eEEEECCchh-HHHHHHHHHHcCCCC-ceEEEEec
Confidence 77777888999999999999999998864 4788888643 333332223577665 56666654
No 339
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=82.06 E-value=20 Score=36.11 Aligned_cols=133 Identities=17% Similarity=0.129 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCCh----------h-HHHHHHHHHHHhccccccCCCccceEE--eecccchhh
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASK----------E-DFEAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERD 164 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~----------~-d~e~v~~i~~~~~~~~~~~~~l~~~i~--~~~r~~~~d 164 (623)
...++....++.+.+.|++.|.+-+|.+.. + -.+.++.+.+..... ++...++ ...|...+.
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~-----g~~v~~~~~~~~~~~~~~ 138 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL-----GYEVAFGCEDASRTDPEE 138 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT-----TSEEEEEETTTGGSSHHH
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc-----CCceEeCccccccccHHH
Confidence 345555555777788899999887765420 1 122232222222111 2211111 123555555
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-CeEEEcccCCCCCCHHHHHHHHHHH
Q 006969 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC-DDVEFSPEDAGRSDRKFLYEILGEV 243 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~-~~V~f~~eda~r~d~e~l~~~~~~~ 243 (623)
+....+.+..+|.++|.+..+..- +++++ +.+.++.+++.-- ..+.|.+- .|......-+-++
T Consensus 139 ~~~~~~~~~~~g~~~i~l~Dt~G~--------~~P~~----v~~lv~~~~~~~~~~~l~~H~H----nd~Gla~An~laA 202 (237)
T PF00682_consen 139 LLELAEALAEAGADIIYLADTVGI--------MTPED----VAELVRALREALPDIPLGFHAH----NDLGLAVANALAA 202 (237)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTS---------S-HHH----HHHHHHHHHHHSTTSEEEEEEB----BTTS-HHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEeeCccCC--------cCHHH----HHHHHHHHHHhccCCeEEEEec----CCccchhHHHHHH
Confidence 555555556667777766544321 23333 2334444443311 13555442 2333444555566
Q ss_pred HHcCCcEE
Q 006969 244 IKVGATTL 251 (623)
Q Consensus 244 ~~aGa~~I 251 (623)
+++||++|
T Consensus 203 ~~aGa~~i 210 (237)
T PF00682_consen 203 LEAGADRI 210 (237)
T ss_dssp HHTT-SEE
T ss_pred HHcCCCEE
Confidence 67777775
No 340
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=82.06 E-value=9.4 Score=39.97 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=76.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHHHH
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGAC 304 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaAv~ 304 (623)
+..|.+-+.+.++.+.+.|++.|.++-|.| .++.+|-.++++.+.+..++ +++|-+++ ++..--++.-+..|.+
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG--RVPVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT--SSEEEEEEESSSHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC--ceEEEecCcchhHHHHHHHHHHHhh
Confidence 578999999999999999999999999987 45788999999999887765 35555554 6678888999999999
Q ss_pred hCCCEEEeccCCccCccCcccHHHHHHHHHh
Q 006969 305 AGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 305 aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~ 335 (623)
+||+.+-.+---+. ..+-++++..++.
T Consensus 95 ~Gad~v~v~~P~~~----~~s~~~l~~y~~~ 121 (289)
T PF00701_consen 95 AGADAVLVIPPYYF----KPSQEELIDYFRA 121 (289)
T ss_dssp TT-SEEEEEESTSS----SCCHHHHHHHHHH
T ss_pred cCceEEEEeccccc----cchhhHHHHHHHH
Confidence 99999877543322 2455555555543
No 341
>PLN02334 ribulose-phosphate 3-epimerase
Probab=82.03 E-value=61 Score=32.76 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=93.4
Q ss_pred HHHHHHHHHhHcCCCEEEEecCCC--ChhH-H--HHHHHHHHHhccccccCCCccceEEeecccchhh-HHHHHHHHhcC
Q 006969 102 EKLDIARQLAKLGVDIIEAGFPAA--SKED-F--EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAWEAVKYA 175 (623)
Q Consensus 102 ~Kl~Ia~~L~~~Gvd~IEvGfP~~--s~~d-~--e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~eal~~a 175 (623)
.-.+.++.+.+.|++.|.+-..-. .|.. + +.++.+.+.. +. +.-+-|.-.++.| ++.+.+ +
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~-~~--------~~~vhlmv~~p~d~~~~~~~----~ 87 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHT-DA--------PLDCHLMVTNPEDYVPDFAK----A 87 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcC-CC--------cEEEEeccCCHHHHHHHHHH----c
Confidence 345577788899999998843211 2221 2 5677776542 11 1011111112333 444444 5
Q ss_pred CCCEEEEEecC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC-CcEEe-
Q 006969 176 KRPRIHTFIAT-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLN- 252 (623)
Q Consensus 176 ~~~~v~i~~~~-Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG-a~~I~- 252 (623)
|.+.|.+-..- . -+...+.++.+++.|+. +.++.- ..+..+. ++...+.| +|.|.
T Consensus 88 gad~v~vH~~q~~---------------~d~~~~~~~~i~~~g~~-iGls~~--~~t~~~~----~~~~~~~~~~Dyi~~ 145 (229)
T PLN02334 88 GASIFTFHIEQAS---------------TIHLHRLIQQIKSAGMK-AGVVLN--PGTPVEA----VEPVVEKGLVDMVLV 145 (229)
T ss_pred CCCEEEEeecccc---------------chhHHHHHHHHHHCCCe-EEEEEC--CCCCHHH----HHHHHhccCCCEEEE
Confidence 88888443320 1 12345678888888874 544431 0133333 33444443 88773
Q ss_pred ---ecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 253 ---IPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 253 ---l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.+.+.|-..|....+.++.+++..++ ++|.+ |-|.-..|.-..+++||+.|
T Consensus 146 ~~v~pg~~~~~~~~~~~~~i~~~~~~~~~---~~I~a----~GGI~~e~i~~l~~aGad~v 199 (229)
T PLN02334 146 MSVEPGFGGQSFIPSMMDKVRALRKKYPE---LDIEV----DGGVGPSTIDKAAEAGANVI 199 (229)
T ss_pred EEEecCCCccccCHHHHHHHHHHHHhCCC---CcEEE----eCCCCHHHHHHHHHcCCCEE
Confidence 34445544556667777888887653 33433 45777788889999999987
No 342
>PRK06801 hypothetical protein; Provisional
Probab=81.98 E-value=30 Score=36.61 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE-EeecC-cccccCHHHHHHHHHHHHHhCCCCccee
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPD-TVGITMPTEFGKLIADIKANTPGIENVV 283 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~-I~l~D-TvG~~~P~~v~~li~~l~~~~~~~~~v~ 283 (623)
+.++.+.|++.|+-.-.|+. .+.+.+..+++++.+.++.. |.+.. +..+..+..+..++..+.++.+ +|
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~-----~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~----vp 76 (286)
T PRK06801 6 LANGLAHARKHGYALGAFNV-----LDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD----IP 76 (286)
T ss_pred HHHHHHHHHHCCceEEEEee-----CCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC----CC
Confidence 56778889999885345665 58899999999999998654 44433 3344556778889988888763 67
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 284 ISTHCQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 284 i~~H~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
+.+|. |-|.-+.....|+++|++.|..
T Consensus 77 V~lHl--DH~~~~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 77 VVLNL--DHGLHFEAVVRALRLGFSSVMF 103 (286)
T ss_pred EEEEC--CCCCCHHHHHHHHHhCCcEEEE
Confidence 88765 4466678899999999998644
No 343
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.81 E-value=67 Score=33.07 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~ 178 (623)
++++-.+.++.+.+.|+..+=+-.......|.+.++.+.+.+++.. ...+=+..+...++....++.+...++.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~~------~l~vDan~~~~~~~a~~~~~~l~~~~i~ 158 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDA------ELRVDANRGWTPKQAIRALRALEDLGLD 158 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhcCCCC------EEEEeCCCCcCHHHHHHHHHHHHhcCCC
Confidence 4566667777778889987766322222457788888887664321 1122222233344444444555556666
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC-CcEEeecCcc
Q 006969 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLNIPDTV 257 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG-a~~I~l~DTv 257 (623)
.|.-.++..+ ++ ...+..+..++. |.. |.+-.++..+.+ +++.+ ++.|+ .|..
T Consensus 159 ~iEeP~~~~d--------------~~---~~~~l~~~~~ip-ia~---dE~~~~~~~~~~----~i~~~~~d~v~-~k~~ 212 (265)
T cd03315 159 YVEQPLPADD--------------LE---GRAALARATDTP-IMA---DESAFTPHDAFR----ELALGAADAVN-IKTA 212 (265)
T ss_pred EEECCCCccc--------------HH---HHHHHHhhCCCC-EEE---CCCCCCHHHHHH----HHHhCCCCEEE-Eecc
Confidence 6654332221 11 111222333443 322 445556655544 33444 55554 4555
Q ss_pred cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 006969 258 GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (623)
Q Consensus 258 G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsl 300 (623)
=..-..+..++....++. ++++.+||+...|++++.++
T Consensus 213 ~~GGi~~~~~~~~~A~~~-----gi~~~~~~~~~s~i~~~a~~ 250 (265)
T cd03315 213 KTGGLTKAQRVLAVAEAL-----GLPVMVGSMIESGLGTLANA 250 (265)
T ss_pred cccCHHHHHHHHHHHHHc-----CCcEEecCccchHHHHHHHH
Confidence 444455666676666654 26689999988888876654
No 344
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=81.78 E-value=22 Score=37.53 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC-CcEEee---c-Cc-c-cc---cCHHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLNI---P-DT-V-GI---TMPTEFG 266 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG-a~~I~l---~-DT-v-G~---~~P~~v~ 266 (623)
...++.++.+.+. .++.+.. +..+.. ..+++.+.+.++.+.++| +|.|-| | -+ . |. ..|+.+.
T Consensus 74 ~g~~~~~~~~~~~---~~~~~~p-~i~si~---g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~ 146 (301)
T PRK07259 74 PGVDAFIEEELPW---LEEFDTP-IIANVA---GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAY 146 (301)
T ss_pred cCHHHHHHHHHHH---HhccCCc-EEEEec---cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHH
Confidence 3455666655443 2233433 444442 346788889999999999 998866 1 11 1 22 2589999
Q ss_pred HHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 267 KLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 267 ~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
++++.+++.+ ++||.+..=-+.--...-+..+.++|++.|+.
T Consensus 147 eiv~~vr~~~----~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 147 EVVKAVKEVV----KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHhc----CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 9999999986 25677766433333334445677899999865
No 345
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=81.77 E-value=60 Score=32.49 Aligned_cols=157 Identities=14% Similarity=0.024 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceE---E-------eecccchhhHHHH
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI---C-------GLSRCNERDIKTA 168 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i---~-------~~~r~~~~dI~~a 168 (623)
+.++-.++++...+.|..-++++. ++.++.+.+.... |.+ . .+.....+.++.+
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~~-------~~~i~~i~~~~~~---------Pil~~~~~d~~~~~~~~~~~~~~v~~a 84 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRANG-------VEDIKAIRAVVDV---------PIIGIIKRDYPDSEVYITPTLKEVDAL 84 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcCC-------HHHHHHHHHhCCC---------CEEEEEecCCCCCCceECCCHHHHHHH
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHH------HHHHHHHHHHHH-cCCCeEEEcccCCCCCCHHHHHHHHH
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVV------EIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILG 241 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l------~~~~~~v~~ak~-~G~~~V~f~~eda~r~d~e~l~~~~~ 241 (623)
.++ |++.|.+-.+ . +.+.+.++++++ .|+. +.... .+++.+ +
T Consensus 85 ~~a----Gad~I~~d~~-----------------~~~~p~~~~~~~~i~~~~~~~~i~-vi~~v-----~t~ee~----~ 133 (221)
T PRK01130 85 AAA----GADIIALDAT-----------------LRPRPDGETLAELVKRIKEYPGQL-LMADC-----STLEEG----L 133 (221)
T ss_pred HHc----CCCEEEEeCC-----------------CCCCCCCCCHHHHHHHHHhCCCCe-EEEeC-----CCHHHH----H
Q ss_pred HHHHcCCcEEeec--Ccccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch-HHHHHHHHHHhCCCEE
Q 006969 242 EVIKVGATTLNIP--DTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGARQV 310 (623)
Q Consensus 242 ~~~~aGa~~I~l~--DTvG~--~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANslaAv~aGA~~V 310 (623)
.+.++|++.|.+- +..|. .....-.++++.+++.+ ++|+-. ..|. -..+...++++||+.|
T Consensus 134 ~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~----~iPvia----~GGI~t~~~~~~~l~~GadgV 199 (221)
T PRK01130 134 AAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV----GCPVIA----EGRINTPEQAKKALELGAHAV 199 (221)
T ss_pred HHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC----CCCEEE----ECCCCCHHHHHHHHHCCCCEE
No 346
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=81.72 E-value=23 Score=38.08 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe--e-c-----CcccccCHHHHHHHH
Q 006969 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN--I-P-----DTVGITMPTEFGKLI 269 (623)
Q Consensus 198 t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~--l-~-----DTvG~~~P~~v~~li 269 (623)
..+..++.+.+.. +..+.. |..+.. ..+++.+.++++.+.++|+|.|- + | +-.|...++.+.+++
T Consensus 83 g~~~~~~~i~~~~---~~~~~p-vi~si~---g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv 155 (325)
T cd04739 83 GPEEYLELIRRAK---RAVSIP-VIASLN---GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDIL 155 (325)
T ss_pred CHHHHHHHHHHHH---hccCCe-EEEEeC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHH
Confidence 3445555444321 222432 555542 35667778999999999988654 3 2 334444567788999
Q ss_pred HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 270 ADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 270 ~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
+.+++.+. +||.+=.=-++..-..-+.++.++||+.|..+
T Consensus 156 ~~v~~~~~----iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 156 RAVKSAVT----IPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred HHHHhccC----CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 99998763 45666554444444555566788999998653
No 347
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=81.71 E-value=40 Score=35.44 Aligned_cols=142 Identities=19% Similarity=0.169 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHhHcC-CCEEEEe--cCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 96 ATLTSKEKLDIARQLAKLG-VDIIEAG--FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~G-vd~IEvG--fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
..+++++-+++...+.++| +..+-++ =|...++-++.++.+.+.. +....+...+-... +..++.+
T Consensus 46 ~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d~~ei~~~~~~~~--------~~~~~~~TnG~~~~---~~~~~~l 114 (347)
T COG0535 46 GELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPDLLEIVEYARKKG--------GIRVSLSTNGTLLT---EEVLEKL 114 (347)
T ss_pred cccCHHHHHHHHHHHHHcCCeeEEEEeCCCccccccHHHHHHHHhhcC--------CeEEEEeCCCccCC---HHHHHHH
Confidence 4578888889999999999 6655553 3666665566666655421 11122322220011 1223445
Q ss_pred hcCCCCEEEEEecCCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 173 KYAKRPRIHTFIATSG--IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd--~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
+.++.+.|.+.+-..+ .|-. ..+. +-+++.+.+.++.+++.|+. +.... ..++.+.+.+.++++.+.+.|++.
T Consensus 115 ~~~g~~~v~iSid~~~~e~hd~-~rg~--~g~~~~~~~~i~~~~~~g~~-~~~~~-~v~~~n~~~l~~~~~~~~~~g~~~ 189 (347)
T COG0535 115 KEAGLDYVSISLDGLDPETHDP-IRGV--KGVFKRAVEAIKNLKEAGIL-VVINT-TVTKINYDELPEIADLAAELGVDE 189 (347)
T ss_pred HhcCCcEEEEEecCCChhhhhh-hcCC--CcHHHHHHHHHHHHHHcCCe-eeEEE-EEecCcHHHHHHHHHHHHHcCCCE
Confidence 5668888887665533 2232 2232 24678888999999999975 44444 355778889999999999999876
Q ss_pred Eee
Q 006969 251 LNI 253 (623)
Q Consensus 251 I~l 253 (623)
+.+
T Consensus 190 ~~~ 192 (347)
T COG0535 190 LNV 192 (347)
T ss_pred EEE
Confidence 555
No 348
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=81.49 E-value=23 Score=36.94 Aligned_cols=136 Identities=20% Similarity=0.269 Sum_probs=80.4
Q ss_pred HHHHHHhHcCCCEEEEe---------cCCCChhHHHHH----HHHHHHhccccccCCCccceEEe--ec---ccchhhHH
Q 006969 105 DIARQLAKLGVDIIEAG---------FPAASKEDFEAV----RTIAKEVGNAVDAESGYVPVICG--LS---RCNERDIK 166 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvG---------fP~~s~~d~e~v----~~i~~~~~~~~~~~~~l~~~i~~--~~---r~~~~dI~ 166 (623)
..|+.++++|+|.|=+| ++...|-..|.+ +.+++-.++. ..++. |. ...++-++
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~--------~vv~DmPf~sy~~s~e~av~ 98 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNA--------FVVADMPFGSYQASPEQAVR 98 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSS--------EEEEE--TTSSTSSHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCc--------eEEecCCcccccCCHHHHHH
Confidence 56889999999999997 344445443333 3333322221 12222 11 22344567
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----Eccc-----CCC----CC--
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE-----DAG----RS-- 231 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~----f~~e-----da~----r~-- 231 (623)
.|.+.++++|++.|.+-... ...+.|+.+.+.|+. |. +.|. .++ |+
T Consensus 99 nA~rl~ke~GadaVKlEGg~------------------~~~~~i~~l~~~GIP-V~gHiGLtPQ~~~~~GGyr~qGk~~~ 159 (261)
T PF02548_consen 99 NAGRLMKEAGADAVKLEGGA------------------EIAETIKALVDAGIP-VMGHIGLTPQSVHQLGGYRVQGKTAE 159 (261)
T ss_dssp HHHHHHHTTT-SEEEEEBSG------------------GGHHHHHHHHHTT---EEEEEES-GGGHHHHTSS--CSTSHH
T ss_pred HHHHHHHhcCCCEEEeccch------------------hHHHHHHHHHHCCCc-EEEEecCchhheeccCCceEEecCHH
Confidence 78888898999999886542 234577888888986 42 2333 122 33
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHH
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADI 272 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l 272 (623)
+...+++-++++.++|+-.|.|- +.|.++.+.|..-
T Consensus 160 ~a~~l~~~A~ale~AGaf~ivlE-----~vp~~la~~It~~ 195 (261)
T PF02548_consen 160 EAEKLLEDAKALEEAGAFAIVLE-----CVPAELAKAITEA 195 (261)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE-----SBBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccEEeee-----cCHHHHHHHHHHh
Confidence 44677788888999999999885 6789888887664
No 349
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=81.49 E-value=23 Score=36.97 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=81.8
Q ss_pred HHHHHHHhHcCCCEEEEec---------CCCChhH----HHHHHHHHHHhccccc-cCCCccceEEeecccchhhHHHHH
Q 006969 104 LDIARQLAKLGVDIIEAGF---------PAASKED----FEAVRTIAKEVGNAVD-AESGYVPVICGLSRCNERDIKTAW 169 (623)
Q Consensus 104 l~Ia~~L~~~Gvd~IEvGf---------P~~s~~d----~e~v~~i~~~~~~~~~-~~~~l~~~i~~~~r~~~~dI~~a~ 169 (623)
--.|+.++++|||.|=+|. |...+-. ...++.+++-.++.+. .+ .| +.++. ..++-++.+.
T Consensus 25 ~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~D---mP-f~sy~-~~e~a~~na~ 99 (263)
T TIGR00222 25 YSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTD---LP-FMSYA-TPEQALKNAA 99 (263)
T ss_pred HHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeC---CC-cCCCC-CHHHHHHHHH
Confidence 4568899999999999973 3222222 2444555543222110 00 01 11232 1334455566
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----Eccc----CC-----CCCC--HH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE----DA-----GRSD--RK 234 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~----f~~e----da-----~r~d--~e 234 (623)
+.++++|++.|++-.. ....+.++.+.+.|+. |. +.|. ++ +|++ .+
T Consensus 100 rl~~eaGa~aVkiEgg------------------~~~~~~i~~l~~~gIp-V~gHiGltPq~a~~~ggy~~qgrt~~~a~ 160 (263)
T TIGR00222 100 RVMQETGANAVKLEGG------------------EWLVETVQMLTERGVP-VVGHLGLTPQSVNILGGYKVQGKDEEAAK 160 (263)
T ss_pred HHHHHhCCeEEEEcCc------------------HhHHHHHHHHHHCCCC-EEEecCCCceeEeecCCeeecCCCHHHHH
Confidence 6677789999987543 1234566888888886 44 1111 11 2332 35
Q ss_pred HHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCC
Q 006969 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (623)
Q Consensus 235 ~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~ 277 (623)
.+++-++++.++||+.|.|. +.|. ++.+.+.+.++
T Consensus 161 ~~i~~A~a~e~AGA~~ivlE-----~vp~---~~a~~It~~l~ 195 (263)
T TIGR00222 161 KLLEDALALEEAGAQLLVLE-----CVPV---ELAAKITEALA 195 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEc-----CCcH---HHHHHHHHhCC
Confidence 77788888999999999986 4453 45555566554
No 350
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=81.32 E-value=41 Score=33.73 Aligned_cols=145 Identities=14% Similarity=0.199 Sum_probs=78.5
Q ss_pred HHHHHHHHHhHcCCCEEEEe----cCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 102 EKLDIARQLAKLGVDIIEAG----FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 102 ~Kl~Ia~~L~~~Gvd~IEvG----fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
+=+++++.+.+.|++.+=+= .....+.+++.++.+++.... |...+-+-...+|++.++++ |+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~---------pi~~ggGI~~~ed~~~~~~~----Ga 95 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGV---------PVQVGGGIRSLEDVEKLLDL----GV 95 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCC---------CEEEeCCcCCHHHHHHHHHc----CC
Confidence 56788999999999877662 222233457888888875321 33333333357788877664 88
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--c------CCCCC-CHHHHHHHHHHHHHcCC
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--E------DAGRS-DRKFLYEILGEVIKVGA 248 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~--e------da~r~-d~e~l~~~~~~~~~aGa 248 (623)
+.|-+ .+.-. +..+. ..+.++..|.+.+.++. - .+.+. ......++++.+.+.|+
T Consensus 96 ~~vvl--gs~~l-----------~d~~~---~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~ 159 (230)
T TIGR00007 96 DRVII--GTAAV-----------ENPDL---VKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGL 159 (230)
T ss_pred CEEEE--ChHHh-----------hCHHH---HHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCC
Confidence 87633 22111 11122 33444555533232211 0 12211 11234577888889999
Q ss_pred cEEeecCc--ccccCHHHHHHHHHHHHHhC
Q 006969 249 TTLNIPDT--VGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 249 ~~I~l~DT--vG~~~P~~v~~li~~l~~~~ 276 (623)
+.+.+-|- .|...... .++++.+++..
T Consensus 160 ~~ii~~~~~~~g~~~g~~-~~~i~~i~~~~ 188 (230)
T TIGR00007 160 EGIIYTDISRDGTLSGPN-FELTKELVKAV 188 (230)
T ss_pred CEEEEEeecCCCCcCCCC-HHHHHHHHHhC
Confidence 97776543 34433322 55667777664
No 351
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=81.32 E-value=49 Score=31.17 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCC
Q 006969 238 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (623)
Q Consensus 238 ~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~G 316 (623)
..++.+.++|++.|.|....++. |....++++.+++.+++. .+.+.+|.+.+.-.+. ..+.|++.|...-..
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~-----~~~~g~d~i~~~~~~ 146 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDV-KVVVKLSPTGELAAAA-----AEEAGVDEVGLGNGG 146 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCc-eEEEEECCCCccchhh-----HHHcCCCEEEEcCCc
Confidence 33678889999999999988865 888999999999987532 2445555444433221 567899998765443
No 352
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=81.22 E-value=25 Score=37.78 Aligned_cols=132 Identities=16% Similarity=0.084 Sum_probs=81.5
Q ss_pred HHHhcCCCCEEEEEecC--------CH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEcccC--CCCCCH
Q 006969 170 EAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPED--AGRSDR 233 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~--------Sd--~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~---~V~f~~ed--a~r~d~ 233 (623)
+..+.+|.+.|.|-.+- |+ .++...+|-+.++-.+.+.+.++.+|+. |-+ .|.+++++ ....++
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~ 240 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL 240 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH
Confidence 33466899988775432 22 2455567888888888888999888875 322 13456542 123468
Q ss_pred HHHHHHHHHHHHcCCcEEeecCcccccC--------HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGITM--------PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~~--------P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 305 (623)
+...++++.+.++|++.|.+. .|..+ |....++.+.+++.++ +||.. .-+-. ....+..+++.
T Consensus 241 ~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~----iPVi~-~G~i~--t~~~a~~~l~~ 311 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAG----IPVIA-VGLIT--DPEQAEAILES 311 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCC----CCEEE-eCCCC--CHHHHHHHHHc
Confidence 888999999999999998863 22111 2223456677787763 34432 11111 24556667777
Q ss_pred C-CCEE
Q 006969 306 G-ARQV 310 (623)
Q Consensus 306 G-A~~V 310 (623)
| |+.|
T Consensus 312 g~aD~V 317 (336)
T cd02932 312 GRADLV 317 (336)
T ss_pred CCCCee
Confidence 7 5554
No 353
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=81.14 E-value=83 Score=33.71 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHhH-cCCCEEEE--ecCCCC-hhH-HHHHHHHHHHhccccccCCCccceEEeeccc---chhhH-H
Q 006969 96 ATLTSKEKLDIARQLAK-LGVDIIEA--GFPAAS-KED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC---NERDI-K 166 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~-~Gvd~IEv--GfP~~s-~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~---~~~dI-~ 166 (623)
..++.++-.++++.|.+ .||..|-+ |=|-.. +.+ .+.++.+.+. + .+..+.-.+|. +..-+ +
T Consensus 117 ~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i-~--------~v~~iri~Tr~~v~~p~rit~ 187 (321)
T TIGR03822 117 GVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAI-D--------HVKIVRFHTRVPVADPARVTP 187 (321)
T ss_pred CcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhC-C--------CccEEEEeCCCcccChhhcCH
Confidence 45688888889998875 48886665 557543 233 2445555442 1 11111112222 11111 1
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEc--ccCCCCCCHHHHHHHHHHHH
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS--PEDAGRSDRKFLYEILGEVI 244 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~--~eda~r~d~e~l~~~~~~~~ 244 (623)
..++.++.+|.. +. +++.-.|. .|..+.+.++++.+++.|+. |... .-.+--.+.+.+.++.+.+.
T Consensus 188 ell~~L~~~g~~-v~--i~l~~~h~--------~el~~~~~~ai~~L~~~Gi~-v~~q~vLl~gvNd~~~~l~~l~~~l~ 255 (321)
T TIGR03822 188 ALIAALKTSGKT-VY--VALHANHA--------RELTAEARAACARLIDAGIP-MVSQSVLLRGVNDDPETLAALMRAFV 255 (321)
T ss_pred HHHHHHHHcCCc-EE--EEecCCCh--------hhcCHHHHHHHHHHHHcCCE-EEEEeeEeCCCCCCHHHHHHHHHHHH
Confidence 223455556633 33 33322222 23457788999999999985 4332 21233467888999999999
Q ss_pred HcCCc--EEeecCcccc-----cCHHHHHHHHHHHHHhCCCC
Q 006969 245 KVGAT--TLNIPDTVGI-----TMPTEFGKLIADIKANTPGI 279 (623)
Q Consensus 245 ~aGa~--~I~l~DTvG~-----~~P~~v~~li~~l~~~~~~~ 279 (623)
+.|+. .+..+|-++. ..+++..+++..+++.+++.
T Consensus 256 ~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~ 297 (321)
T TIGR03822 256 ECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGL 297 (321)
T ss_pred hcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCC
Confidence 99986 4566787743 36678899999999998874
No 354
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=81.04 E-value=38 Score=36.31 Aligned_cols=168 Identities=21% Similarity=0.209 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHhHcC-CCEEEEec--CCCC-----hhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHH
Q 006969 97 TLTSKEKLDIARQLAKLG-VDIIEAGF--PAAS-----KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 168 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~G-vd~IEvGf--P~~s-----~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 168 (623)
.-+.++..+++..+.+++ .|+||+=. |-.. .++.|.+..+.+.++... -+|.+.=++. +..||...
T Consensus 105 ~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~-----~~Pv~vKl~P-~~~di~~i 178 (310)
T COG0167 105 GPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT-----KVPVFVKLAP-NITDIDEI 178 (310)
T ss_pred CCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc-----cCceEEEeCC-CHHHHHHH
Confidence 345888999999999999 99999953 4311 125667777776654321 1466665665 77888887
Q ss_pred HHHHhcCCCCEEEEEecCCH---HHHHH--------HhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCHHHH
Q 006969 169 WEAVKYAKRPRIHTFIATSG---IHMEH--------KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFL 236 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd---~h~~~--------~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~e~l 236 (623)
.+++.++|.+-|.+...+-+ +-... .-|.|=..+...+.+.|+..+++ +.+ +-... -++=.+.+.+
T Consensus 179 A~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~-ipIIG-vGGI~s~~DA 256 (310)
T COG0167 179 AKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGD-IPIIG-VGGIETGEDA 256 (310)
T ss_pred HHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCC-CcEEE-ecCcCcHHHH
Confidence 78888889998877664431 11222 12456666777777888766554 322 22211 2444566655
Q ss_pred HHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhC
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~ 276 (623)
++.+ .+||+.+-++-..=+--|.-+.++++.|.+.+
T Consensus 257 ~E~i----~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l 292 (310)
T COG0167 257 LEFI----LAGASAVQVGTALIYKGPGIVKEIIKGLARWL 292 (310)
T ss_pred HHHH----HcCCchheeeeeeeeeCchHHHHHHHHHHHHH
Confidence 5544 47999988887777777888888887776654
No 355
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=80.99 E-value=22 Score=36.19 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcE--EeecCcccccCHHH-H-HHHHHHHHHhCCCCcceeEEEeec-CCcchHHHHHHHHHH
Q 006969 230 RSDRKFLYEILGEVIKVGATT--LNIPDTVGITMPTE-F-GKLIADIKANTPGIENVVISTHCQ-NDLGLSTANTIAGAC 304 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~aGa~~--I~l~DTvG~~~P~~-v-~~li~~l~~~~~~~~~v~i~~H~H-ND~GlAvANslaAv~ 304 (623)
-.|+..+.+-++.+.++|++. +-+-| |...|.- + .+.++++++..|+ +++.+|.| ++-...+ ....+
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~H~DimD--g~fvpn~~~G~~~v~~lr~~~~~---~~lDvHLm~~~p~~~i---~~~~~ 86 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWLHVDVMD--GHFVPNLSFGPPVVKSLRKHLPN---TFLDCHLMVSNPEKWV---DDFAK 86 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEeccc--CccCCCcCcCHHHHHHHHhcCCC---CCEEEEECCCCHHHHH---HHHHH
Confidence 457777888888888888875 44555 6666652 2 2578888887763 67999999 4433322 56678
Q ss_pred hCCCEEEeccCCccCccCcccHHHHHHHHHhccccccccc--ccCCChhHHHHHH
Q 006969 305 AGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGL--YTGINTRHIVMAS 357 (623)
Q Consensus 305 aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~--~t~idl~~L~~~s 357 (623)
+||++| |+-+ | ++...+++.+..++..|-. -|+ .+..+.+.+.++.
T Consensus 87 ~Gad~i--tvH~--e-a~~~~~~~~l~~ik~~G~~--~gval~p~t~~e~l~~~l 134 (228)
T PTZ00170 87 AGASQF--TFHI--E-ATEDDPKAVARKIREAGMK--VGVAIKPKTPVEVLFPLI 134 (228)
T ss_pred cCCCEE--EEec--c-CCchHHHHHHHHHHHCCCe--EEEEECCCCCHHHHHHHH
Confidence 899998 4433 3 1222266777777765521 233 3444555555443
No 356
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=80.64 E-value=72 Score=32.69 Aligned_cols=93 Identities=22% Similarity=0.157 Sum_probs=54.8
Q ss_pred HHHhcCCCCEEEEEecCCHHHHH----H-------HhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCH--HH
Q 006969 170 EAVKYAKRPRIHTFIATSGIHME----H-------KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDR--KF 235 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~----~-------~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~--e~ 235 (623)
+.+..+|++.+++=+|.||.-+. . +-|.+.+ ...+.++..|+. .+. +.+- +..++ .+
T Consensus 21 ~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~----~~~~~~~~vr~~~~~p-v~lm----~y~n~~~~~ 91 (242)
T cd04724 21 KALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLK----DVLELVKEIRKKNTIP-IVLM----GYYNPILQY 91 (242)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHH----HHHHHHHHHhhcCCCC-EEEE----EecCHHHHh
Confidence 33445677888877666663221 1 1233333 344555666654 233 2220 11122 11
Q ss_pred -HHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHh
Q 006969 236 -LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 236 -l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
+.++++.+.++|++.+.++|- .|++..++++.++++
T Consensus 92 G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~ 128 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEY 128 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHc
Confidence 245677888999999999995 578888999999986
No 357
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=80.62 E-value=16 Score=37.16 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=81.3
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHH----HHHHHhHcCCCEEEE---e-cCCCChhHHHHHHHHHHHhccccccCCCccce
Q 006969 82 VFDTTLRDGEQSPGATLTSKEKLD----IARQLAKLGVDIIEA---G-FPAASKEDFEAVRTIAKEVGNAVDAESGYVPV 153 (623)
Q Consensus 82 I~DtTLRDG~Q~~g~~~t~e~Kl~----Ia~~L~~~Gvd~IEv---G-fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~ 153 (623)
.+=|=||||.|.. ++.+.... ....|++.|+|.|=. | ||.-... .+-
T Consensus 54 vLvTrL~DG~~V~---ls~~~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~----------------------~~l 108 (221)
T PF07302_consen 54 VLVTRLRDGTQVV---LSKKKVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTAR----------------------NPL 108 (221)
T ss_pred eeEEEeCCCCEEE---EEHHHHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCC----------------------cce
Confidence 4556799998754 55444333 444688899998866 2 3421100 010
Q ss_pred EEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCH
Q 006969 154 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 233 (623)
Q Consensus 154 i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~ 233 (623)
|. ...-|...+.++. +-.+|.++.|..+ ++....+.-+..+.. +.|....-+..+.
T Consensus 109 le-----P~ril~~lV~al~--~~~~vGVivP~~e----------------Q~~~~~~kW~~l~~~-~~~a~asPy~~~~ 164 (221)
T PF07302_consen 109 LE-----PDRILPPLVAALV--GGHQVGVIVPLPE----------------QIAQQAEKWQPLGNP-VVVAAASPYEGDE 164 (221)
T ss_pred ee-----hHHhHHHHHHHhc--CCCeEEEEecCHH----------------HHHHHHHHHHhcCCC-eEEEEeCCCCCCH
Confidence 00 1223444455554 3368999998754 122233444445554 5553323334678
Q ss_pred HHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHH
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 271 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~ 271 (623)
+.+.+.++.+.+.|+|.|.| |-.||... .+++++.
T Consensus 165 ~~l~~Aa~~L~~~gadlIvL-DCmGYt~~--~r~~~~~ 199 (221)
T PF07302_consen 165 EELAAAARELAEQGADLIVL-DCMGYTQE--MRDIVQR 199 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEE-ECCCCCHH--HHHHHHH
Confidence 89999999999999999888 99998643 3444433
No 358
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=80.60 E-value=35 Score=38.90 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecC-CCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFP-AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP-~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
+.++ ++.++.|.++|+|.|++-.. +.++.-++.+++|.+..++ ++.+++ .-...++.+.+.+ +|+
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~--------~~v~aG-~V~t~~~a~~~~~----aGa 304 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPH--------VDIIAG-NVVTADQAKNLID----AGA 304 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCC--------ceEEEC-CcCCHHHHHHHHH----cCC
Confidence 3455 89999999999999999543 1233446788888875321 133433 2234566665555 488
Q ss_pred CEEEEEe-cCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeec
Q 006969 178 PRIHTFI-ATS--GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 254 (623)
Q Consensus 178 ~~v~i~~-~~S--d~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~ 254 (623)
+.|.+-+ +.| -.+. ..+....+ +..+.++.+.+++.|+. +-+ |++-.++..+ ++ +..+||+.+.+.
T Consensus 305 d~I~vg~g~Gs~~~t~~--~~~~g~p~-~~ai~~~~~~~~~~~v~---vIa-dGGi~~~~di---~k-Ala~GA~~Vm~G 373 (495)
T PTZ00314 305 DGLRIGMGSGSICITQE--VCAVGRPQ-ASAVYHVARYARERGVP---CIA-DGGIKNSGDI---CK-ALALGADCVMLG 373 (495)
T ss_pred CEEEECCcCCcccccch--hccCCCCh-HHHHHHHHHHHhhcCCe---EEe-cCCCCCHHHH---HH-HHHcCCCEEEEC
Confidence 8876522 222 1111 22222222 44556777888888764 333 5555555433 33 346899998874
Q ss_pred C
Q 006969 255 D 255 (623)
Q Consensus 255 D 255 (623)
-
T Consensus 374 ~ 374 (495)
T PTZ00314 374 S 374 (495)
T ss_pred c
Confidence 3
No 359
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=80.46 E-value=73 Score=32.68 Aligned_cols=208 Identities=17% Similarity=0.190 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhHcCCCEEEE--ecC--CCChhH--HHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHHHH
Q 006969 100 SKEKLDIARQLAKLGVDIIEA--GFP--AASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWEAV 172 (623)
Q Consensus 100 ~e~Kl~Ia~~L~~~Gvd~IEv--GfP--~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~eal 172 (623)
++.-++-...|.+-|..-+=+ |+- +..|-+ ++.++++.++.+ | .+.++.-- .++| ++.+
T Consensus 41 ~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~--------l--~inaHvGfvdE~~----~ekl 106 (275)
T COG1856 41 TKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTG--------L--LINAHVGFVDESD----LEKL 106 (275)
T ss_pred hHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhC--------e--EEEEEeeeccHHH----HHHH
Confidence 333344455778888876655 331 122322 366777776532 2 12222211 2333 3456
Q ss_pred hcCCCCEEEE-EecCCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---eEEEcccCCCCCCHHHHHHHHHHHHHcC
Q 006969 173 KYAKRPRIHT-FIATSG-IHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (623)
Q Consensus 173 ~~a~~~~v~i-~~~~Sd-~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~---~V~f~~eda~r~d~e~l~~~~~~~~~aG 247 (623)
++.+++.+.+ |++-.+ +-.-+++.+|.+. ....++++++.|+. .|..+. +.++...|| +.++.+.+.-
T Consensus 107 k~~~vdvvsLDfvgDn~vIk~vy~l~ksv~d----yl~~l~~L~e~~irvvpHitiGL-~~gki~~e~--kaIdiL~~~~ 179 (275)
T COG1856 107 KEELVDVVSLDFVGDNDVIKRVYKLPKSVED----YLRSLLLLKENGIRVVPHITIGL-DFGKIHGEF--KAIDILVNYE 179 (275)
T ss_pred HHhcCcEEEEeecCChHHHHHHHcCCccHHH----HHHHHHHHHHcCceeceeEEEEe-ccCcccchH--HHHHHHhcCC
Confidence 6668887765 444333 2334556667554 44577888999975 234455 677776654 4566677777
Q ss_pred CcEEee---cCccccc-------CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHH-HHHHHhCCCEEEeccCC
Q 006969 248 ATTLNI---PDTVGIT-------MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANT-IAGACAGARQVEVTING 316 (623)
Q Consensus 248 a~~I~l---~DTvG~~-------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANs-laAv~aGA~~Vd~Tv~G 316 (623)
.|.+.| -=|.|.- +|+++.+.++..|+.+|+ ++.+-|---+|-.---- -.|+.+|++.|---..|
T Consensus 180 ~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~----pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~P~~~ 255 (275)
T COG1856 180 PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN----PVSIGCMRPRGEWRVKLDKEAVLAGVDRITFPPRG 255 (275)
T ss_pred CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC----CeeEeecCcCchhHHHHHHHHHHcCCceeecCCcc
Confidence 776554 3566632 568888999999999996 57777888888654433 47999999999999999
Q ss_pred ccCccCcccHHHHHHH
Q 006969 317 IGERAGNASLEEVVMA 332 (623)
Q Consensus 317 lGERaGNa~lEevv~~ 332 (623)
.+|-++-...++++.+
T Consensus 256 t~e~ak~~r~i~~~~~ 271 (275)
T COG1856 256 TIEYAKSIRDIEIIYE 271 (275)
T ss_pred ceehhhhhhhhhhhhh
Confidence 9998888877776653
No 360
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=80.33 E-value=65 Score=31.99 Aligned_cols=100 Identities=20% Similarity=0.232 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCcccccCH---HHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhC
Q 006969 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMP---TEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P---~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANslaAv~aG 306 (623)
...+....-++.+++.|||.|.+.=-.|.... +++.+.+..+++...+.. ++.++.-.-++- .=.--+..|+++|
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~-~i~~a~ria~e~G 144 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDE-EIIKACEIAIEAG 144 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHH-HHHHHHHHHHHhC
Confidence 44565666678888999999888777775432 556677777777644321 233343323222 2222367899999
Q ss_pred CCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 307 ARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 307 A~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
||+|-++ -|.+ .+++.++++-...+
T Consensus 145 aD~IKTs-TG~~--~~~at~~~v~~~~~ 169 (203)
T cd00959 145 ADFIKTS-TGFG--PGGATVEDVKLMKE 169 (203)
T ss_pred CCEEEcC-CCCC--CCCCCHHHHHHHHH
Confidence 9999998 4443 46688876544333
No 361
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=80.26 E-value=13 Score=39.28 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCC
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~G 316 (623)
..-++.+.++|+|.| |-....+| ..+++..+|+.+ + +++-.=|-| +..++.++..||+.|-+|..|
T Consensus 79 ~~Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~---vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~ 144 (287)
T TIGR00343 79 FVEAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-K---VPFVCGARD-----LGEALRRINEGAAMIRTKGEA 144 (287)
T ss_pred HHHHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-C---CCEEccCCC-----HHHHHHHHHCCCCEEeccccC
Confidence 344677889999999 88888999 578888888887 2 566655555 778899999999999999885
Q ss_pred ccCccCc
Q 006969 317 IGERAGN 323 (623)
Q Consensus 317 lGERaGN 323 (623)
.+||
T Consensus 145 ---gTg~ 148 (287)
T TIGR00343 145 ---GTGN 148 (287)
T ss_pred ---CCcc
Confidence 4666
No 362
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=80.11 E-value=29 Score=38.10 Aligned_cols=140 Identities=11% Similarity=0.008 Sum_probs=86.8
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHM-EHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~-~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a 246 (623)
+++.-...|.+.+-.+.-.-+.+. ...+..+.+..++.+.+++++-.+.......|.+. -+-.+++.-.+.++.+.+.
T Consensus 145 ~i~~Q~~iGsDI~m~LDe~~~~~~~~~~~~~sv~rT~rW~~r~~~~~~~~~~~q~lfgiV-QGG~~~dLR~~Sa~~l~~~ 223 (372)
T PRK01008 145 SVQAQKDLGADIIIPLDELLPFHADPTYFLQSCQRTYVWEKRSLDYHLKNPRHQSMYGVI-HGGIDPDQRKIGCKFVEDL 223 (372)
T ss_pred HHHHHHHHCCCEEEEccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCccceEEEEe-cCCCCHHHHHHHHHHHHhC
Confidence 333333446676655432211111 11222333333444444444332221112456664 3456778788888999999
Q ss_pred CCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHHHHHHHhCCCEEEeccCC
Q 006969 247 GATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANTIAGACAGARQVEVTING 316 (623)
Q Consensus 247 Ga~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANslaAv~aGA~~Vd~Tv~G 316 (623)
+.+.+.|.=.+|. ..+++.+++......+|. +.|.-+ +|.|. ..-+.|+..|+|.+||+.-=
T Consensus 224 ~~~GyaIGG~vge-~~~~~~~il~~~~~~LP~--~kPRyL-----mGvG~P~di~~~V~~GvD~FDcv~Pt 286 (372)
T PRK01008 224 PFDGSAIGGSLGK-NLQEMVEVVGVTTSNLSK--ERPVHL-----LGIGDLPSIWATVGFGIDSFDSSYPT 286 (372)
T ss_pred CCCEEEECCCCCC-CHHHHHHHHHHHHhhCCC--CCCeEE-----ecCCCHHHHHHHHHhCCCeeeeccch
Confidence 9999999886664 778899999999999985 344433 56665 67889999999999998763
No 363
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=80.09 E-value=17 Score=39.38 Aligned_cols=138 Identities=25% Similarity=0.306 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCc-cceEEe----------------eccc
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICG----------------LSRC 160 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~i~~----------------~~r~ 160 (623)
...+.-++=++.|.++|.+.+=+..| +.++.+.++.|.+.+... +. +|-+.. --|-
T Consensus 28 ~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~-----g~~iPlVADIHFd~~lAl~a~~~v~kiRI 100 (359)
T PF04551_consen 28 RDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRAL-----GSPIPLVADIHFDYRLALEAIEAVDKIRI 100 (359)
T ss_dssp T-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCT-----T-SS-EEEEESTTCHHHHHHHHC-SEEEE
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccC-----CCCCCeeeecCCCHHHHHHHHHHhCeEEE
Confidence 35566667788899999999999988 467788888888762110 00 122211 1122
Q ss_pred chhhH---------------HHHHHHHhcCCCC-EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEc
Q 006969 161 NERDI---------------KTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS 224 (623)
Q Consensus 161 ~~~dI---------------~~a~eal~~a~~~-~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~ 224 (623)
|+-.| +.-+++.++.+++ ||.+-..+-+-++..+++-+.+..++.+.+.++.+.++|+..+.+|
T Consensus 101 NPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviS 180 (359)
T PF04551_consen 101 NPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVIS 180 (359)
T ss_dssp -TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEE
T ss_pred CCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 22222 2333444445665 6776655555666677777888888889999999999998877777
Q ss_pred ccCCCCCCHHHHHHHHHHHHH
Q 006969 225 PEDAGRSDRKFLYEILGEVIK 245 (623)
Q Consensus 225 ~eda~r~d~e~l~~~~~~~~~ 245 (623)
.- -+|+....+..+.+.+
T Consensus 181 lK---sSdv~~~i~ayr~la~ 198 (359)
T PF04551_consen 181 LK---SSDVPETIEAYRLLAE 198 (359)
T ss_dssp EE---BSSHHHHHHHHHHHHH
T ss_pred EE---eCChHHHHHHHHHHHH
Confidence 64 3555555555555443
No 364
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=80.04 E-value=19 Score=37.15 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcC
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 175 (623)
..++.++-+++++.|.+.|++.||--+| +.|++..+.+.+... +|...+=.-....++...++. .
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iEeP~~---~~d~~~~~~l~~~~~---------ipia~dE~~~~~~~~~~~i~~---~ 202 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVEQPLP---ADDLEGRAALARATD---------TPIMADESAFTPHDAFRELAL---G 202 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEECCCC---cccHHHHHHHHhhCC---------CCEEECCCCCCHHHHHHHHHh---C
Confidence 4578999999999999999999998554 345677777776532 132222111234555554442 3
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 225 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ 225 (623)
..+.|.+= .++-.-+..+.+.+++|+.+|+. +..+.
T Consensus 203 ~~d~v~~k-------------~~~~GGi~~~~~~~~~A~~~gi~-~~~~~ 238 (265)
T cd03315 203 AADAVNIK-------------TAKTGGLTKAQRVLAVAEALGLP-VMVGS 238 (265)
T ss_pred CCCEEEEe-------------cccccCHHHHHHHHHHHHHcCCc-EEecC
Confidence 45554431 11122356677889999999986 55543
No 365
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=79.91 E-value=14 Score=38.96 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=57.3
Q ss_pred EEEccc---CCCCC-CHHHHHHHHHHHHHcCCcEEeec------CcccccCHHHHHHH---HHHHHHhCCCCcceeEEEe
Q 006969 221 VEFSPE---DAGRS-DRKFLYEILGEVIKVGATTLNIP------DTVGITMPTEFGKL---IADIKANTPGIENVVISTH 287 (623)
Q Consensus 221 V~f~~e---da~r~-d~e~l~~~~~~~~~aGa~~I~l~------DTvG~~~P~~v~~l---i~~l~~~~~~~~~v~i~~H 287 (623)
+.++|. |+++. +++.+++-++...+.||+.|-|. +...+...+|+.++ |+.+++.+ +++|++=
T Consensus 21 lNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISID 96 (282)
T PRK11613 21 LNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF----EVWISVD 96 (282)
T ss_pred EcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEE
Confidence 445454 67764 89999999999999999999886 33333344676664 45566544 3678875
Q ss_pred ecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 288 CQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 288 ~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
.=+ ..-+.+|+++||+.|+--
T Consensus 97 T~~-----~~va~~AL~~GadiINDI 117 (282)
T PRK11613 97 TSK-----PEVIRESAKAGAHIINDI 117 (282)
T ss_pred CCC-----HHHHHHHHHcCCCEEEEC
Confidence 544 334568889999998543
No 366
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.90 E-value=76 Score=32.52 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhHcCCCEEEEecC----CCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 101 KEKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvGfP----~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+=.++++.+.+.|++.|=+--- ...+.+++.++++++.+. .|.+.+=+-...+|++..++. |
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~---------ipv~~~GGi~s~~~~~~~l~~----G 96 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVF---------IPLTVGGGIRSVEDARRLLRA----G 96 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCC---------CCEEeeCCCCCHHHHHHHHHc----C
Confidence 45678899999999998866421 123456889999887642 133433333357777776653 7
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC----------------CCCHHHHHHHH
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG----------------RSDRKFLYEIL 240 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~----------------r~d~e~l~~~~ 240 (623)
++.|.+ .+.- + .+ .+.+.+. ++..|-+.+.++. |.. ........+.+
T Consensus 97 a~~Vii--gt~~------l-~~----p~~~~ei---~~~~g~~~iv~sl-D~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (253)
T PRK02083 97 ADKVSI--NSAA------V-AN----PELISEA---ADRFGSQCIVVAI-DAKRDPEPGRWEVYTHGGRKPTGLDAVEWA 159 (253)
T ss_pred CCEEEE--ChhH------h-hC----cHHHHHH---HHHcCCCCEEEEE-EeccCCCCCCEEEEEcCCceecCCCHHHHH
Confidence 777644 2211 0 01 1222222 2223322233322 110 01112345677
Q ss_pred HHHHHcCCcEEeecC--cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH-HHHHHH-hCCCEEEeccCC
Q 006969 241 GEVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN-TIAGAC-AGARQVEVTING 316 (623)
Q Consensus 241 ~~~~~aGa~~I~l~D--TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN-slaAv~-aGA~~Vd~Tv~G 316 (623)
+.+.+.|++.|.+-| ..|...=. -.++++.+++..+ +|+-.-. |..... ...+++ .||+.+ +.|
T Consensus 160 ~~~~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~~----ipvia~G----Gv~s~~d~~~~~~~~G~~gv---ivg 227 (253)
T PRK02083 160 KEVEELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAVN----VPVIASG----GAGNLEHFVEAFTEGGADAA---LAA 227 (253)
T ss_pred HHHHHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhCC----CCEEEEC----CCCCHHHHHHHHHhCCccEE---eEh
Confidence 788899999988833 44433221 1456777777653 3344332 111222 223454 376543 222
Q ss_pred ccCccCcccHHHHHHHHHh
Q 006969 317 IGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 317 lGERaGNa~lEevv~~L~~ 335 (623)
--=-.|..+++++...|+.
T Consensus 228 ~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 228 SIFHFGEITIGELKAYLAE 246 (253)
T ss_pred HHHHcCCCCHHHHHHHHHH
Confidence 1111356778887777764
No 367
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=79.89 E-value=17 Score=38.95 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCcEEeecC-cccccCHHHHHHHHH--------HHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 006969 234 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLIA--------DIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~D-TvG~~~P~~v~~li~--------~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 304 (623)
+++.+++++.+++||+.|.++| +.+.+.|+++.+++. .+++..|+ +++ +|.|.+.. +-+.-+.
T Consensus 177 ~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~---~~i-lh~cg~~~----~~~~~~~ 248 (335)
T cd00717 177 DATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPG---VPV-ILFAKGAG----GLLEDLA 248 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCC---CCE-EEEcCCCH----HHHHHHH
Confidence 4566777778889999999999 677888988887653 33333212 234 45444322 3444443
Q ss_pred -hCCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 305 -AGARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 305 -aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
.|++.+.. +.+ .++++....+.
T Consensus 249 ~~~~~~~s~-----d~~---~dl~e~k~~~g 271 (335)
T cd00717 249 QLGADVVGL-----DWR---VDLDEARKRLG 271 (335)
T ss_pred hcCCCEEEe-----CCC---CCHHHHHHHhC
Confidence 38777522 222 57777655544
No 368
>PLN02858 fructose-bisphosphate aldolase
Probab=79.85 E-value=1.1e+02 Score=39.48 Aligned_cols=194 Identities=16% Similarity=0.155 Sum_probs=125.6
Q ss_pred cccCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhHH-HHHHHHHHHhccccccCCCccceEEeeccc-
Q 006969 88 RDGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRC- 160 (623)
Q Consensus 88 RDG~Q~~g--~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~- 160 (623)
|.+.+.-+ ..++.|.-..+.+.-.+.+.+.|=--+|... +.++ ..++.+++.. -+|+..-|=-+
T Consensus 1110 ~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~---------~vpV~lHLDHg~ 1180 (1378)
T PLN02858 1110 EKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQA---------SVPITVHFDHGT 1180 (1378)
T ss_pred HHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHC---------CCCEEEECCCCC
Confidence 44555544 3568899999999999999998866565432 2221 2333344321 13544433333
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCC------
Q 006969 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------ 228 (623)
Q Consensus 161 ~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda------ 228 (623)
..+++.+|+++ |...|.+=.| ..+.|||++..++.+++|+..|+. |+- +.||.
T Consensus 1181 ~~~~i~~ai~~----Gf~SVM~DgS----------~l~~eeNi~~t~~vv~~Ah~~gv~-VEaElG~v~g~e~~~~~~~~ 1245 (1378)
T PLN02858 1181 SKHELLEALEL----GFDSVMVDGS----------HLSFTENISYTKSISSLAHSKGLM-VEAELGRLSGTEDGLTVEEY 1245 (1378)
T ss_pred CHHHHHHHHHh----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEecccCCccCCcccccc
Confidence 35667777765 8887754322 247799999999999999999974 542 23332
Q ss_pred --CCCCHHHHHHHHHHHHHcCCcEEeec--Cccccc---CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 006969 229 --GRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (623)
Q Consensus 229 --~r~d~e~l~~~~~~~~~aGa~~I~l~--DTvG~~---~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 301 (623)
..+||+...++++ +-|+|.+-++ -.=|.. .|.-=.++++.+++.++.. ++||.+|. -.|..-.+-..
T Consensus 1246 ~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~-~vpLVlHG--gSG~~~~~~~~ 1319 (1378)
T PLN02858 1246 EAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKK-GVLLVLHG--ASGLPESLIKE 1319 (1378)
T ss_pred ccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCC-CCcEEEeC--CCCCCHHHHHH
Confidence 2678888877776 3588876554 233332 2544556888888887421 37788766 45666788889
Q ss_pred HHHhCCCEEE
Q 006969 302 GACAGARQVE 311 (623)
Q Consensus 302 Av~aGA~~Vd 311 (623)
|+..|+.-|+
T Consensus 1320 ai~~Gi~KiN 1329 (1378)
T PLN02858 1320 CIENGVRKFN 1329 (1378)
T ss_pred HHHcCCeEEE
Confidence 9999998883
No 369
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=79.71 E-value=9.4 Score=40.51 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCcc---------c--ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDTV---------G--ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DTv---------G--~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsl 300 (623)
+++.+.+.++...+.|++.|-+.-+- | .++|+++.++++..++. ++++.+|++.+ ....
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~-----g~~v~~H~~~~-----~~i~ 187 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA-----GLYVAAHAYGA-----EAIR 187 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc-----CCEEEEEeCCH-----HHHH
Confidence 45556666666666666665444221 1 46788898988888875 25788999864 3455
Q ss_pred HHHHhCCCEEE
Q 006969 301 AGACAGARQVE 311 (623)
Q Consensus 301 aAv~aGA~~Vd 311 (623)
.++++|++.|+
T Consensus 188 ~~l~~G~~~i~ 198 (342)
T cd01299 188 RAIRAGVDTIE 198 (342)
T ss_pred HHHHcCCCEEe
Confidence 67788988764
No 370
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=79.57 E-value=38 Score=36.58 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=83.2
Q ss_pred HHHHhcCCCCEEEEEecC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC-eEEEcccCCC--CCCHH
Q 006969 169 WEAVKYAKRPRIHTFIAT--------SGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDAG--RSDRK 234 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~--------Sd~--h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~-~V~f~~eda~--r~d~e 234 (623)
.+..+.+|.+.|.|-.+- |+. ++..++|=|.+.-.+.+.+.++.+|+. +.. .|.+++.|.. -.+++
T Consensus 148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~ 227 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQ 227 (337)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHH
Confidence 334566899999887662 442 455567778887788888888877775 221 2455665422 24678
Q ss_pred HHHHHHHHHHHcCCcEEeecCccccc-------CHHHHHHHHHHHHHhCCCCcceeE-EEeecCCcchHHHHHHHHHHhC
Q 006969 235 FLYEILGEVIKVGATTLNIPDTVGIT-------MPTEFGKLIADIKANTPGIENVVI-STHCQNDLGLSTANTIAGACAG 306 (623)
Q Consensus 235 ~l~~~~~~~~~aGa~~I~l~DTvG~~-------~P~~v~~li~~l~~~~~~~~~v~i-~~H~HND~GlAvANslaAv~aG 306 (623)
...++++.+.++|+|.|.+ +.|.. .|....++.+.+++.+. +|+ ..-.-++ ...+..+++.|
T Consensus 228 e~~~i~~~l~~~gvD~i~v--s~g~~~~~~~~~~~~~~~~~~~~ik~~~~----ipVi~~G~i~~----~~~a~~~l~~g 297 (337)
T PRK13523 228 DYVQYAKWMKEQGVDLIDV--SSGAVVPARIDVYPGYQVPFAEHIREHAN----IATGAVGLITS----GAQAEEILQNN 297 (337)
T ss_pred HHHHHHHHHHHcCCCEEEe--CCCCCCCCCCCCCccccHHHHHHHHhhcC----CcEEEeCCCCC----HHHHHHHHHcC
Confidence 8899999999999999988 34431 12223356677777653 333 3333233 35566778776
Q ss_pred -CCEE
Q 006969 307 -ARQV 310 (623)
Q Consensus 307 -A~~V 310 (623)
||.|
T Consensus 298 ~~D~V 302 (337)
T PRK13523 298 RADLI 302 (337)
T ss_pred CCChH
Confidence 6654
No 371
>PRK07360 FO synthase subunit 2; Reviewed
Probab=79.54 E-value=12 Score=41.05 Aligned_cols=104 Identities=21% Similarity=0.153 Sum_probs=67.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccC--HHHHHHHHHHHHHhCCCCcceeEEEee---------cCCcchH
Q 006969 227 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITM--PTEFGKLIADIKANTPGIENVVISTHC---------QNDLGLS 295 (623)
Q Consensus 227 da~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~--P~~v~~li~~l~~~~~~~~~v~i~~H~---------HND~GlA 295 (623)
..++.++|.+.+.++.+.+.|+.++.|..-.+-.. ++.+.++++.+++.+|+ +.+|+ -+..|+-
T Consensus 87 ~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~-----i~i~a~s~~ei~~~~~~~G~~ 161 (371)
T PRK07360 87 GAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD-----IHLHAFSPMEVYFAAREDGLS 161 (371)
T ss_pred CCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC-----cceeeCCHHHHHHHHhhcCCC
Confidence 34567899999999999999999999983222222 45688999999988774 33443 2367887
Q ss_pred HHHHHHHH-HhCCCEEEeccCCccC-------ccCcccHHHHHHHHHh
Q 006969 296 TANTIAGA-CAGARQVEVTINGIGE-------RAGNASLEEVVMAFKC 335 (623)
Q Consensus 296 vANslaAv-~aGA~~Vd~Tv~GlGE-------RaGNa~lEevv~~L~~ 335 (623)
.-..+..+ +||++.+..|-.-+.- ..+..++++.+..++.
T Consensus 162 ~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~ 209 (371)
T PRK07360 162 YEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKT 209 (371)
T ss_pred HHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHH
Confidence 77765444 6899998532221100 2455566655554443
No 372
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=79.54 E-value=21 Score=35.27 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=85.0
Q ss_pred eEEeecccchhhHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHhCCCHHHH-HHHHHHHHHHHHHcCCCeEEEcccCCCC
Q 006969 153 VICGLSRCNERDIKTAWEAVKYAKRPRIHTFI-ATSGIHMEHKLRKTKQQV-VEIARSMVKFARSLGCDDVEFSPEDAGR 230 (623)
Q Consensus 153 ~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~-~~Sd~h~~~~l~~t~ee~-l~~~~~~v~~ak~~G~~~V~f~~eda~r 230 (623)
.|||+. +.+|++.+.+. |++.|.+-. +.|+ .++ .+.+.+..+.++.. ...|-+-. .
T Consensus 2 KiCGi~--~~ed~~~a~~~----Gvd~ig~i~~~~s~-----------R~v~~~~a~~l~~~~~~~-~~~V~v~v----n 59 (203)
T cd00405 2 KICGIT--TLEDALAAAEA----GADAIGFIFAPKSP-----------RYVSPEQAREIVAALPPF-VKRVGVFV----N 59 (203)
T ss_pred EECCCC--CHHHHHHHHHc----CCCEEEEecCCCCC-----------CCCCHHHHHHHHHhCCCC-CcEEEEEe----C
Confidence 577776 56788877765 888888754 3333 223 45556666666552 12233311 1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCccee--EEEeecCCcchHHHHHHHHHHhCCC
Q 006969 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVV--ISTHCQNDLGLSTANTIAGACAGAR 308 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~--i~~H~HND~GlAvANslaAv~aGA~ 308 (623)
.+++.+ .+.+.+.|++.|-|-..- .|. .++.+++.++. ++. +++++|++.- ...+...|++
T Consensus 60 ~~~~~i---~~ia~~~~~d~Vqlhg~e---~~~----~~~~l~~~~~~--~~i~~i~~~~~~~~~-----~~~~~~~~aD 122 (203)
T cd00405 60 EDLEEI---LEIAEELGLDVVQLHGDE---SPE----YCAQLRARLGL--PVIKAIRVKDEEDLE-----KAAAYAGEVD 122 (203)
T ss_pred CCHHHH---HHHHHhcCCCEEEECCCC---CHH----HHHHHHhhcCC--cEEEEEecCChhhHH-----HhhhccccCC
Confidence 123444 444557799999887432 333 45556665532 245 5555665532 2455667898
Q ss_pred EE--EeccCCccCccCcc-cHHHHHHHHHhcccccccccccCCChhHHHHHHH
Q 006969 309 QV--EVTINGIGERAGNA-SLEEVVMAFKCRGEHILGGLYTGINTRHIVMASK 358 (623)
Q Consensus 309 ~V--d~Tv~GlGERaGNa-~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~ 358 (623)
++ |+..-+.++++|.. +++ ++..+.. .... -+--||+.+.+.++-+
T Consensus 123 ~il~dt~~~~~~Gg~g~~~~~~-~l~~~~~-~~Pv--ilaGGI~~~Nv~~~i~ 171 (203)
T cd00405 123 AILLDSKSGGGGGGTGKTFDWS-LLRGLAS-RKPV--ILAGGLTPDNVAEAIR 171 (203)
T ss_pred EEEEcCCCCCCCCCCcceEChH-Hhhcccc-CCCE--EEECCCChHHHHHHHH
Confidence 85 65444333334433 332 2332221 1111 1335777777665553
No 373
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=79.45 E-value=70 Score=34.82 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=53.4
Q ss_pred hHHHHHHHHhcCCCCE--EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE----ccc--CC--CCCCH
Q 006969 164 DIKTAWEAVKYAKRPR--IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF----SPE--DA--GRSDR 233 (623)
Q Consensus 164 dI~~a~eal~~a~~~~--v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f----~~e--da--~r~d~ 233 (623)
+++.|++. |.+. +++|.. |+ ...+.++.+.+.++.|++.|+..+.+ ++. +. +.+++
T Consensus 151 sVedAlrL----GAdAV~~tvy~G-s~---------~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~ 216 (348)
T PRK09250 151 SVEDALRL----GAVAVGATIYFG-SE---------ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAA 216 (348)
T ss_pred cHHHHHHC----CCCEEEEEEecC-CH---------HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccH
Confidence 46667765 5554 555554 33 22467888999999999999974432 211 11 14468
Q ss_pred HHHHHHHHHHHHcCCcEEeecC
Q 006969 234 KFLYEILGEVIKVGATTLNIPD 255 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~D 255 (623)
+.+.-.++.+.+.|||.|-..=
T Consensus 217 d~Ia~AaRiaaELGADIVKv~y 238 (348)
T PRK09250 217 DLTGQANHLAATIGADIIKQKL 238 (348)
T ss_pred HHHHHHHHHHHHHcCCEEEecC
Confidence 9999999999999999876543
No 374
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=79.44 E-value=38 Score=34.93 Aligned_cols=133 Identities=10% Similarity=0.012 Sum_probs=74.4
Q ss_pred HHHHHhHcCCCEEEEe---------cCCCChh----HHHHHHHHHHHhccccccCCCccceEEe----ecccchhhHHHH
Q 006969 106 IARQLAKLGVDIIEAG---------FPAASKE----DFEAVRTIAKEVGNAVDAESGYVPVICG----LSRCNERDIKTA 168 (623)
Q Consensus 106 Ia~~L~~~Gvd~IEvG---------fP~~s~~----d~e~v~~i~~~~~~~~~~~~~l~~~i~~----~~r~~~~dI~~a 168 (623)
-|+.++++|+|.|=+| +|....- -...++.+.+.... .|.++. +.. ..+++-+.
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~--------~pviaD~~~G~g~-~~~~~~~~ 94 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPL--------ALIVADLPFGAYG-APTAAFEL 94 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC--------CCEEEeCCCCCCc-CHHHHHHH
Confidence 4778889999999886 3432221 13455555553221 133332 333 33444444
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC--------------CC--CC
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA--------------GR--SD 232 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda--------------~r--~d 232 (623)
.+.+..+|+..|+|-... + ..+.++.+++.++. |.--. |. ++ .+
T Consensus 95 ~~~l~~aGa~gv~iED~~--------------~----~~~~i~ai~~a~i~-ViaRt-d~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE--------------W----HIETLQMLTAAAVP-VIAHT-GLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred HHHHHHcCCcEEEEcCcH--------------H----HHHHHHHHHHcCCe-EEEEe-CCchhhhhccCCceeeccCHHH
Confidence 444555899999885531 2 22346666777653 32111 22 11 23
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHH
Q 006969 233 RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 271 (623)
Q Consensus 233 ~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~ 271 (623)
.+.+++-+++..++||+.|.+. +. .++++.++.+.
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e---~~-~~e~~~~i~~~ 189 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVME---CV-PVELAKQITEA 189 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc---CC-CHHHHHHHHHh
Confidence 4566777788889999999997 33 55545444443
No 375
>PRK00208 thiG thiazole synthase; Reviewed
Probab=79.29 E-value=15 Score=38.03 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=89.0
Q ss_pred HHHHHHhHcCCCEEEEecCCCCh--hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEE
Q 006969 105 DIARQLAKLGVDIIEAGFPAASK--EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHT 182 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGfP~~s~--~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i 182 (623)
.+.+.|...|-+.+=+.--.... ..-.++..|... +- .+.|+-.| |+..++-|..|--+-.-.+.++|.+
T Consensus 25 ~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~~-~~------~~lpNTaG-~~ta~eAv~~a~lare~~~~~~iKl 96 (250)
T PRK00208 25 VMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPPL-GV------TLLPNTAG-CRTAEEAVRTARLAREALGTNWIKL 96 (250)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhcccc-CC------EECCCCCC-CCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 45677888999988886422221 111223322210 10 22355433 4444554543311111136678877
Q ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCCeEE-EcccCCCCCCHHHHHHHHHHHHHcCCcEEeec--Cc
Q 006969 183 FIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL---GCDDVE-FSPEDAGRSDRKFLYEILGEVIKVGATTLNIP--DT 256 (623)
Q Consensus 183 ~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~---G~~~V~-f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~--DT 256 (623)
-+=..+- -.+....+.++.++.+ |+. |. ||..| + ..++++.++|++.| .| ..
T Consensus 97 EVi~d~~-----------~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d-----~----~~ak~l~~~G~~~v-mPlg~p 154 (250)
T PRK00208 97 EVIGDDK-----------TLLPDPIETLKAAEILVKEGFV-VLPYCTDD-----P----VLAKRLEEAGCAAV-MPLGAP 154 (250)
T ss_pred EEecCCC-----------CCCcCHHHHHHHHHHHHHCCCE-EEEEeCCC-----H----HHHHHHHHcCCCEe-CCCCcC
Confidence 5433221 1123344566666666 986 55 66642 2 56778888899988 45 55
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 257 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 257 vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.|...+-.-.++++.+++.. +. .+.++-+.|. -.-+..|++.||+.|
T Consensus 155 IGsg~gi~~~~~i~~i~e~~-~v-pVIveaGI~t-----peda~~AmelGAdgV 201 (250)
T PRK00208 155 IGSGLGLLNPYNLRIIIEQA-DV-PVIVDAGIGT-----PSDAAQAMELGADAV 201 (250)
T ss_pred CCCCCCCCCHHHHHHHHHhc-CC-eEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 55444333345577777753 22 1444433332 245678888999986
No 376
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=79.21 E-value=17 Score=37.59 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=88.9
Q ss_pred HHHHHHhHcCCCEEEEecCCCCh---hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhc-CCCCEE
Q 006969 105 DIARQLAKLGVDIIEAGFPAASK---EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY-AKRPRI 180 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGfP~~s~---~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~-a~~~~v 180 (623)
.+.+.|...|.+.+=+.--..+. .+-.++..|... + ..+.|+-.| |+.-++-|..|- ..++ .+.++|
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~-~------~~~lpNTaG-~~ta~eAv~~a~-lare~~~~~~i 94 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKS-G------YTLLPNTAG-CRTAEEAVRTAR-LAREALGTDWI 94 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhcccc-C------CEECCCCCC-CCCHHHHHHHHH-HHHHHhCCCeE
Confidence 45677888999988886433221 111222222110 0 023355433 444444444331 1111 367788
Q ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCCeEE-EcccCCCCCCHHHHHHHHHHHHHcCCcEEeec--
Q 006969 181 HTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL---GCDDVE-FSPEDAGRSDRKFLYEILGEVIKVGATTLNIP-- 254 (623)
Q Consensus 181 ~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~---G~~~V~-f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~-- 254 (623)
.+-+-..+- -.+....+.++.++.+ |+. |. |+..| + ..++++.++|++.| .|
T Consensus 95 KlEVi~d~~-----------~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd-----~----~~ar~l~~~G~~~v-mPlg 152 (248)
T cd04728 95 KLEVIGDDK-----------TLLPDPIETLKAAEILVKEGFT-VLPYCTDD-----P----VLAKRLEDAGCAAV-MPLG 152 (248)
T ss_pred EEEEecCcc-----------ccccCHHHHHHHHHHHHHCCCE-EEEEeCCC-----H----HHHHHHHHcCCCEe-CCCC
Confidence 875433321 1233444566666666 986 55 66532 2 56778888899988 45
Q ss_pred CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 255 DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 255 DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
...|....-.-.++|+.+++.. +. .+.++-+.|. -.-+..|++.||+.|
T Consensus 153 ~pIGsg~Gi~~~~~I~~I~e~~-~v-pVI~egGI~t-----peda~~AmelGAdgV 201 (248)
T cd04728 153 SPIGSGQGLLNPYNLRIIIERA-DV-PVIVDAGIGT-----PSDAAQAMELGADAV 201 (248)
T ss_pred cCCCCCCCCCCHHHHHHHHHhC-CC-cEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 5555444333355666777653 22 1444433332 346678899999986
No 377
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=79.21 E-value=7.4 Score=40.19 Aligned_cols=141 Identities=22% Similarity=0.134 Sum_probs=86.5
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc---cCCCCCCHHHHHHHHHHHHHcCCcEEee
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP---EDAGRSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~---eda~r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
++.+.+-..+|-++- + +.+++-|+.++++|+. |.++- |-+.. +..+.++++.+.+.|-+.|-+
T Consensus 38 ID~~K~g~Gt~~l~~--------~---~~l~eki~l~~~~gV~-v~~GGtl~E~a~~--q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 38 IDFLKFGWGTSALYP--------E---EILKEKIDLAHSHGVY-VYPGGTLFEVAYQ--QGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp -SEEEE-TTGGGGST--------C---HHHHHHHHHHHCTT-E-EEE-HHHHHHHHH--TT-HHHHHHHHHHCT-SEEEE
T ss_pred ccEEEecCceeeecC--------H---HHHHHHHHHHHHcCCe-EeCCcHHHHHHHh--cChHHHHHHHHHHcCCCEEEe
Confidence 466666666654322 2 3355788999999974 55421 11111 345667788888999999999
Q ss_pred cCcccccCHHHHHHHHHHHHHh-CCCCcceeEEEeecC-------CcchHHHHHHHHHHhCCCEE--Eec---cCCccCc
Q 006969 254 PDTVGITMPTEFGKLIADIKAN-TPGIENVVISTHCQN-------DLGLSTANTIAGACAGARQV--EVT---INGIGER 320 (623)
Q Consensus 254 ~DTvG~~~P~~v~~li~~l~~~-~~~~~~v~i~~H~HN-------D~GlAvANslaAv~aGA~~V--d~T---v~GlGER 320 (623)
.|..--+.+++-.++|+.++++ + .+.-++.-.+ |...-+-.....++|||+.| ++- -+|+=+.
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf----~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~ 179 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGF----KVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDN 179 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTS----EEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-T
T ss_pred cCCceeCCHHHHHHHHHHHHHCCC----EEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCC
Confidence 9999999999999999999876 4 2444555443 35567778899999999996 332 2277778
Q ss_pred cCcccHHHHHHHHHh
Q 006969 321 AGNASLEEVVMAFKC 335 (623)
Q Consensus 321 aGNa~lEevv~~L~~ 335 (623)
.||...+.+...+..
T Consensus 180 ~g~~r~d~v~~i~~~ 194 (244)
T PF02679_consen 180 DGEVRTDLVEKIIER 194 (244)
T ss_dssp TS-B-HHHHHHHHTT
T ss_pred CCCccHHHHHHHHHh
Confidence 999999877766654
No 378
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=79.16 E-value=1.2e+02 Score=34.49 Aligned_cols=159 Identities=21% Similarity=0.251 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+|.+|+..|- ...+.|||+|-+.|- .+++|...+|.+.+..+.. ....+.| . +++.++.. +.+...
T Consensus 171 ~ltekD~~di~-f~~~~~vD~ia~SFV-~~~~di~~~r~~l~~~~~~----~~iiakI---E--t~~av~nl-deI~~~- 237 (480)
T cd00288 171 ALSEKDKADLR-FGVEQGVDMIFASFV-RKASDVLEIREVLGEKGKD----IKIIAKI---E--NQEGVNNF-DEILEA- 237 (480)
T ss_pred CCCHHHHHHHH-HHHHcCCCEEEECCC-CCHHHHHHHHHHHHhcCCC----ceEEEEE---C--CHHHHHhH-HHHHHh-
Confidence 36777877755 556889999999886 4677887787776643211 0111222 1 23334322 222222
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
.+. ++++-.|+=++ +..+++.....+.++.|+++|+. |.. |.....+-+...+-+++.++.+ |+|.
T Consensus 238 ~Dg--ImIargDLg~e----~g~~~v~~~qk~ii~~~~~~gkp-vi~ATqmLeSM~~~p~PTRAEvtDVanav~d-G~D~ 309 (480)
T cd00288 238 SDG--IMVARGDLGVE----IPAEEVFLAQKMLIAKCNLAGKP-VITATQMLESMIYNPRPTRAEVSDVANAVLD-GTDC 309 (480)
T ss_pred cCE--EEECcchhhhh----cChHHHHHHHHHHHHHHHHcCCC-EEEEchhHHHHhhCCCCCchhhHHHHHHHHh-CCcE
Confidence 444 56666665443 23678888888999999999986 443 2223334444556677776654 9999
Q ss_pred Eeec-CcccccCHHHHHHHHHHHHHhC
Q 006969 251 LNIP-DTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 251 I~l~-DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+.|. -|.=...|.+.-+.+..+.+..
T Consensus 310 vmLS~ETa~G~yPveaV~~m~~I~~~a 336 (480)
T cd00288 310 VMLSGETAKGKYPVEAVKAMARICLEA 336 (480)
T ss_pred EEEechhcCCCCHHHHHHHHHHHHHHH
Confidence 9995 5666678988888877776654
No 379
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=79.08 E-value=51 Score=35.51 Aligned_cols=142 Identities=19% Similarity=0.254 Sum_probs=91.7
Q ss_pred HHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEe
Q 006969 105 DIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFI 184 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~ 184 (623)
.-+..|+.+|++.+=++++-. .+...++.+++.- .|.|...+.+..++|+.|++.++..|.+-+.++-
T Consensus 114 ~svd~l~~~~~~ayKIaS~E~--~~~plik~iA~~~----------kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLh 181 (347)
T COG2089 114 TAVDLLESLNPPAYKIASGEI--NDLPLIKYIAKKG----------KPIILSTGMATIEEIEEAVAILRENGNPDIALLH 181 (347)
T ss_pred HHHHHHHhcCCCeEEecCccc--cChHHHHHHHhcC----------CCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEE
Confidence 345666667777766665432 2467888888741 2788888999999999999999999988554442
Q ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE----Eee------c
Q 006969 185 ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT----LNI------P 254 (623)
Q Consensus 185 ~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~----I~l------~ 254 (623)
-+| .+-...|+ -++..+.+++...++. |.|| .....++..++ ++..||.. +.| |
T Consensus 182 C~s------~YPap~ed--~NL~~i~~l~~~Fn~~-vGlS-----DHT~g~~a~l~--AvALGA~viEKHFtldk~~~Gp 245 (347)
T COG2089 182 CTS------AYPAPFED--VNLKAIPKLAEAFNAI-VGLS-----DHTLGILAPLA--AVALGASVIEKHFTLDKSREGP 245 (347)
T ss_pred ecC------CCCCCHHH--hhHHHHHHHHHHhCCc-cccc-----cCccchhHHHH--HHHhcccceeeeeeecCCCCCC
Confidence 222 22222232 2233445555555653 4443 34445665554 44567743 333 6
Q ss_pred CcccccCHHHHHHHHHHHHH
Q 006969 255 DTVGITMPTEFGKLIADIKA 274 (623)
Q Consensus 255 DTvG~~~P~~v~~li~~l~~ 274 (623)
|..=.+.|.++.+++..+++
T Consensus 246 D~~fSldP~efk~mv~~ir~ 265 (347)
T COG2089 246 DHAFSLDPDEFKEMVDAIRQ 265 (347)
T ss_pred CcceecCHHHHHHHHHHHHH
Confidence 88889999999999999987
No 380
>PLN02591 tryptophan synthase
Probab=79.07 E-value=85 Score=32.58 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=56.6
Q ss_pred HHhcCCCCEEEEEecCCH-------H----HHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEE---EcccCCCCCCHHH
Q 006969 171 AVKYAKRPRIHTFIATSG-------I----HMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVE---FSPEDAGRSDRKF 235 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd-------~----h~~~~l~~t~ee~l~~~~~~v~~ak~-~G~~~V~---f~~eda~r~d~e~ 235 (623)
++..+|++.|.+=+|-|| + +..-+-|.+.++.++.+.+ .|+ .....|- |++. .+. =
T Consensus 24 ~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~----~r~~~~~p~ilm~Y~N~i--~~~---G 94 (250)
T PLN02591 24 LLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKE----VAPQLSCPIVLFTYYNPI--LKR---G 94 (250)
T ss_pred HHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH----HhcCCCCCEEEEecccHH--HHh---H
Confidence 344457777777777776 1 1222346777777776544 332 2222121 1221 111 1
Q ss_pred HHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHh
Q 006969 236 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
+.++++.+.++|++.+.+|| +.+++..++...++++
T Consensus 95 ~~~F~~~~~~aGv~GviipD----LP~ee~~~~~~~~~~~ 130 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPD----LPLEETEALRAEAAKN 130 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCC----CCHHHHHHHHHHHHHc
Confidence 33678888999999999999 5678899999998875
No 381
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=79.06 E-value=38 Score=38.08 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHhHc--CCCEEEEec--CCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKL--GVDIIEAGF--PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~--Gvd~IEvGf--P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
..+.+..++=++.+.+. |++.|-++- +...+ +.+..+.+.+... ++ ...+.+|... + +.-++.+
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~---~~~~~l~~~l~~~-----~i--~~~~~~~~~~-~-~e~l~~l 293 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREFFFDDDTFTDDK---PRAEEIARKLGPL-----GV--TWSCNARANV-D-YETLKVM 293 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCH---HHHHHHHHHHhhc-----Cc--eEEEEecCCC-C-HHHHHHH
Confidence 35777777766666654 888887752 22222 2333333332110 11 2223334321 1 2335667
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHcCCcEE
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
+.+|..+|.+-+-+.+-.+.++++|.. ..+.+.++++.++++|+. +..+..-+ -..+++.+.+.++.+.+.+.+.+
T Consensus 294 ~~aG~~~v~iGiES~s~~~L~~~~K~~--~~~~~~~~i~~~~~~Gi~-v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~ 370 (472)
T TIGR03471 294 KENGLRLLLVGYESGDQQILKNIKKGL--TVEIARRFTRDCHKLGIK-VHGTFILGLPGETRETIRKTIDFAKELNPHTI 370 (472)
T ss_pred HHcCCCEEEEcCCCCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCe-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCce
Confidence 778999888866555445556676542 245677889999999985 54332212 13456778888888888888776
Q ss_pred eecCcccccCHHHHHHHHHHHHHh
Q 006969 252 NIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 252 ~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
.+ ..++|.-=..+.+.++++
T Consensus 371 ~~----~~l~P~PGT~l~~~~~~~ 390 (472)
T TIGR03471 371 QV----SLAAPYPGTELYDQAKQN 390 (472)
T ss_pred ee----eecccCCCcHHHHHHHHC
Confidence 53 456666555566655553
No 382
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=78.88 E-value=79 Score=32.13 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHhHcCCCEEEE----e-c-CCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 99 TSKEKLDIARQLAKLGVDIIEA----G-F-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEv----G-f-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
+...-.+-++.|.+.|+|++=+ | | |..+- -.++++.|++..++. + +-..-. ..+.+..++.+
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~-G~~~v~~lr~~~~~~--------~-lDvHLm--~~~p~~~i~~~ 84 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSF-GPPVVKSLRKHLPNT--------F-LDCHLM--VSNPEKWVDDF 84 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCc-CHHHHHHHHhcCCCC--------C-EEEEEC--CCCHHHHHHHH
Confidence 3344456677778889887655 3 3 43322 246777777642111 1 111111 23344455556
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC-eEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~-~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
..+|++.|.+-..+.+ .++.+.++.+|++|+. -|.++| .++.+.+.++++. ..+|.|
T Consensus 85 ~~~Gad~itvH~ea~~---------------~~~~~~l~~ik~~G~~~gval~p----~t~~e~l~~~l~~---~~vD~V 142 (228)
T PTZ00170 85 AKAGASQFTFHIEATE---------------DDPKAVARKIREAGMKVGVAIKP----KTPVEVLFPLIDT---DLVDMV 142 (228)
T ss_pred HHcCCCEEEEeccCCc---------------hHHHHHHHHHHHCCCeEEEEECC----CCCHHHHHHHHcc---chhhhH
Confidence 6679998876443321 2245678888889975 134455 3566666555410 011111
Q ss_pred e----ecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 252 N----IPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 252 ~----l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
. =+..-|...-....+.++.+++..+. +.|.+ |-|.-..|.-.++++||+.+
T Consensus 143 l~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~---~~I~V----dGGI~~~ti~~~~~aGad~i 198 (228)
T PTZ00170 143 LVMTVEPGFGGQSFMHDMMPKVRELRKRYPH---LNIQV----DGGINLETIDIAADAGANVI 198 (228)
T ss_pred HhhhcccCCCCcEecHHHHHHHHHHHHhccc---CeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence 1 12233444434455566777777653 23433 67787889999999999987
No 383
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=78.85 E-value=60 Score=35.61 Aligned_cols=188 Identities=16% Similarity=0.084 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEE---E-EecCCCCh-hH-HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDII---E-AGFPAASK-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~I---E-vGfP~~s~-~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
.++.++=-+++..+..-|||.| | .|.+..+| +| .+.+....+......-+...|.++|++- ..+-++++ +
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~---~~em~~ra-~ 212 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGP---PTQLLERA-R 212 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCC---HHHHHHHH-H
Confidence 5789999999999999999999 4 23333333 33 2344333332211000011234444432 22333343 3
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHH--------------------HHHHHHHHHHHHHcCCCeEEE-cccCCC
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQV--------------------VEIARSMVKFARSLGCDDVEF-SPEDAG 229 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~--------------------l~~~~~~v~~ak~~G~~~V~f-~~eda~ 229 (623)
..+++|.+.+.+...+.-.-.-..+.. ++. +....-.-+.+|-.|.+.+.| ++....
T Consensus 213 ~a~~~Ga~~vMv~~~~~G~~~~~~l~~--~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~g~~ 290 (364)
T cd08210 213 FAKEAGAGGVLIAPGLTGLDTFRELAE--DFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIFPNYGGRF 290 (364)
T ss_pred HHHHcCCCEEEeecccchHHHHHHHHh--cCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEEeCCCcCCc
Confidence 445678887766544432111111110 111 111112345566678875556 443333
Q ss_pred CCCHHHHHHHHHHHHHcCCc-EEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCc
Q 006969 230 RSDRKFLYEILGEVIKVGAT-TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 292 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~aGa~-~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~ 292 (623)
..+++.+.++++.+.+-... .-.+|--.|.+.|.++.++++.+-..+-- .+-=++|.|-|-
T Consensus 291 ~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~Dvil--~aGGgi~gHp~g 352 (364)
T cd08210 291 GFSREECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVELYGPDVML--LIGGSLLRAGDD 352 (364)
T ss_pred cCCHHHHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHHHcCCcEEE--EccccccCCCCC
Confidence 35667777777765443221 22234448889998888887776532200 111367888764
No 384
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.76 E-value=27 Score=35.50 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=63.0
Q ss_pred hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-----CC-----CC
Q 006969 163 RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-----GR-----SD 232 (623)
Q Consensus 163 ~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-----~r-----~d 232 (623)
-+++.+++.++++|.+.|-+..+. ..+ +.+..+.++++|++.+.++.... .+ .+
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~---------~~~-------~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPY---------DWD-------AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPG 77 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCc---------cCC-------HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCc
Confidence 367778888888899999886532 122 22344567789987434432100 00 11
Q ss_pred -----HHHHHHHHHHHHHcCCcEEeecCcc--cccCHHH-HHHHHHHHHHh---CCCCcceeEEEeecCC
Q 006969 233 -----RKFLYEILGEVIKVGATTLNIPDTV--GITMPTE-FGKLIADIKAN---TPGIENVVISTHCQND 291 (623)
Q Consensus 233 -----~e~l~~~~~~~~~aGa~~I~l~DTv--G~~~P~~-v~~li~~l~~~---~~~~~~v~i~~H~HND 291 (623)
.+.+.+.++.+.+.|+..|.+.-.. +-..+++ ...+++.+++. ... .++.|.++.||.
T Consensus 78 ~~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~gi~l~lE~~~~ 146 (254)
T TIGR03234 78 REEEFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDR-IGLTLLIEPINS 146 (254)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEECCc
Confidence 2566678888889999998875211 1111233 23333333332 111 147788888865
No 385
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.73 E-value=37 Score=37.10 Aligned_cols=136 Identities=17% Similarity=0.018 Sum_probs=82.9
Q ss_pred HHHHhcCCCCEEEEEecCC----------HHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccc---CC---
Q 006969 169 WEAVKYAKRPRIHTFIATS----------GIHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPE---DA--- 228 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~S----------d~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~---~V~f~~e---da--- 228 (623)
....+.+|.+.|.|-.+-. -.++...+|=+.+.-.+.+.+.|+.+|+. |-+ .|.++++ +.
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~ 229 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTAR 229 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccC
Confidence 3334668999987765542 12344557778888888888999988886 432 2456763 11
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCccc-ccCHHH---HHHHHHHHHHhCCCCcceeEEEeecCCc------------
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVG-ITMPTE---FGKLIADIKANTPGIENVVISTHCQNDL------------ 292 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG-~~~P~~---v~~li~~l~~~~~~~~~v~i~~H~HND~------------ 292 (623)
.-.+++...++++.+.++|+|.|.+. .| +..|.. -..+...+++.++ +|+....--+.
T Consensus 230 ~g~~~~e~~~~~~~l~~~gvd~i~vs--~g~~~~~~~~~~~~~~~~~~k~~~~----~pv~~~G~i~~~~~~~~~~~~~~ 303 (361)
T cd04747 230 LADTPDELEALLAPLVDAGVDIFHCS--TRRFWEPEFEGSELNLAGWTKKLTG----LPTITVGSVGLDGDFIGAFAGDE 303 (361)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEec--CCCccCCCcCccchhHHHHHHHHcC----CCEEEECCccccccccccccccc
Confidence 12577888899999999999998773 23 112211 1345566777663 45554433210
Q ss_pred ---chHHHHHHHHHHhC-CCEE
Q 006969 293 ---GLSTANTIAGACAG-ARQV 310 (623)
Q Consensus 293 ---GlAvANslaAv~aG-A~~V 310 (623)
-.....+..+++.| ||.|
T Consensus 304 ~~~~~~~~~a~~~l~~g~~D~V 325 (361)
T cd04747 304 GASPASLDRLLERLERGEFDLV 325 (361)
T ss_pred ccccCCHHHHHHHHHCCCCCee
Confidence 01335566777766 6654
No 386
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=78.59 E-value=30 Score=35.64 Aligned_cols=125 Identities=18% Similarity=0.081 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCeEEEcccCCCCC----CHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHh-CCCC
Q 006969 205 IARSMVKFARSLGCDDVEFSPEDAGRS----DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN-TPGI 279 (623)
Q Consensus 205 ~~~~~v~~ak~~G~~~V~f~~eda~r~----d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~-~~~~ 279 (623)
.+++-++.|+++|+. |.++ ++-. -...+.+.++.+.+.|-+.|-|.|..--+.+++-.++|+.++++ +.-
T Consensus 42 ~l~eki~la~~~~V~-v~~G---Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v- 116 (237)
T TIGR03849 42 IVKEKIEMYKDYGIK-VYPG---GTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV- 116 (237)
T ss_pred HHHHHHHHHHHcCCe-EeCC---ccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE-
Confidence 356888999999974 5443 1111 12456667778889999999999999999999999999999975 210
Q ss_pred cceeEEEeec-----CCcchHHHHHHHHHHhCCCEE--Eec---c-CCccCccCcccHHHHHHHHHh
Q 006969 280 ENVVISTHCQ-----NDLGLSTANTIAGACAGARQV--EVT---I-NGIGERAGNASLEEVVMAFKC 335 (623)
Q Consensus 280 ~~v~i~~H~H-----ND~GlAvANslaAv~aGA~~V--d~T---v-~GlGERaGNa~lEevv~~L~~ 335 (623)
...++.... -+...-+-..-..++|||++| ++- = -|+=+..||.....+...+..
T Consensus 117 -~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~ 182 (237)
T TIGR03849 117 -LSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAEN 182 (237)
T ss_pred -eccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhh
Confidence 011333222 122334446667799999985 551 2 367778899888766655553
No 387
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=78.50 E-value=7.5 Score=39.23 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 271 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~ 271 (623)
+|.+|+++.+.+--.+.+..|- -|.||--.. -.-++|+.++++.+.+.|.... -||+|+..++.+.+++..
T Consensus 19 ~t~eel~~~~~~~~~f~~~sgg-GVt~SGGEP-llq~~fl~~l~~~~k~~gi~~~--leTnG~~~~~~~~~l~~~ 89 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGG-GVTLSGGEV-LMQAEFATRFLQRLRLWGVSCA--IETAGDAPASKLLPLAKL 89 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCC-EEEEeCchH-HcCHHHHHHHHHHHHHcCCCEE--EECCCCCCHHHHHHHHHh
Confidence 6888988887776666664433 377864222 2346999999999999986443 499999988877666544
No 388
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=78.37 E-value=11 Score=38.74 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=66.1
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE---ccc---CCCCCCHHHHHHHH
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SPE---DAGRSDRKFLYEIL 240 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f---~~e---da~r~d~e~l~~~~ 240 (623)
..+++++..|+++|.+..|=.+ +.-...++|..+.|++.+.+ +.+ +..+.+++.+.+.+
T Consensus 110 A~~~AL~alg~~RIalvTPY~~---------------~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~ 174 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTP---------------ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAA 174 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcH---------------HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHH
Confidence 3445566669999999887543 22235668888999974433 332 46689999999999
Q ss_pred HHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCC
Q 006969 241 GEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (623)
Q Consensus 241 ~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~ 277 (623)
+++...++|.|.++.|+ ....++|..+-+.+.
T Consensus 175 ~~~~~~~aDAifisCTn-----Lrt~~vi~~lE~~lG 206 (239)
T TIGR02990 175 LAAFDPDADALFLSCTA-----LRAATCAQRIEQAIG 206 (239)
T ss_pred HHhcCCCCCEEEEeCCC-----chhHHHHHHHHHHHC
Confidence 99988899999998665 446677888777664
No 389
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=78.26 E-value=1.1e+02 Score=33.97 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec--CCCC---------hhHHHHHHHHHHHhccccccCCCccceEEeecccchhhH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGF--PAAS---------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI 165 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGf--P~~s---------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI 165 (623)
..+.++=.++++.+.+.|+|.||+-+ |-.. .++.+.++++.+.+.... -.|.+.=++ .+..||
T Consensus 123 ~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-----~iPv~vKLs-Pn~t~i 196 (385)
T PLN02495 123 EYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-----TVPVWAKMT-PNITDI 196 (385)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-----cCceEEEeC-CChhhH
Confidence 36889999999999999999999865 5321 135677777766553321 124444444 245567
Q ss_pred HHHHHHHhcCCCCEEEEEecCCH---HHHHH-----Hh-------CCCHHHHHHHHHHHHHHHHHc-------CCCeEEE
Q 006969 166 KTAWEAVKYAKRPRIHTFIATSG---IHMEH-----KL-------RKTKQQVVEIARSMVKFARSL-------GCDDVEF 223 (623)
Q Consensus 166 ~~a~eal~~a~~~~v~i~~~~Sd---~h~~~-----~l-------~~t~ee~l~~~~~~v~~ak~~-------G~~~V~f 223 (623)
..-.+++..+|++-|.++..+.. +.++. .+ +.+=.-+...+..+|..+++. ++. +
T Consensus 197 ~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ip---I 273 (385)
T PLN02495 197 TQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRS---L 273 (385)
T ss_pred HHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCc---E
Confidence 66666667779998888766543 21111 01 123122333333333333322 222 2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhC
Q 006969 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 224 ~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~ 276 (623)
.. -++=++.+.+.+++ .+||+.+-++=-+=+-=|.-+.++.+.|.+.+
T Consensus 274 iG-vGGI~s~~Da~e~i----~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m 321 (385)
T PLN02495 274 SG-IGGVETGGDAAEFI----LLGADTVQVCTGVMMHGYPLVKNLCAELQDFM 321 (385)
T ss_pred EE-ECCCCCHHHHHHHH----HhCCCceeEeeeeeecCcHHHHHHHHHHHHHH
Confidence 12 24456666665544 47999988876655544888888888776654
No 390
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=78.03 E-value=40 Score=36.99 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=66.3
Q ss_pred EEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHH
Q 006969 221 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANT 299 (623)
Q Consensus 221 V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANs 299 (623)
..|.+..+ -.+++.-.+.++.+.+.+.+.+.|.--......+++.++|..++..+|. +.|. |. +|.|. .+-
T Consensus 179 ~lfgiVqG-g~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~iv~~~~~~lp~--~kPr--yl---~Gvg~P~~i 250 (368)
T TIGR00430 179 ALFGIVQG-GTYEDLRSQSAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTAPLLPK--DKPR--YL---MGVGTPEDL 250 (368)
T ss_pred eEEEEeCC-CCCHHHHHHHHHHHHHCCCCeeEeCCccCCCCHHHHHHHHHHHHhhCCc--ccce--ee---cCCCCHHHH
Confidence 46766544 4455655567888888898888887633334567789999999988875 2333 32 55655 578
Q ss_pred HHHHHhCCCEEEeccCCccCccCcc
Q 006969 300 IAGACAGARQVEVTINGIGERAGNA 324 (623)
Q Consensus 300 laAv~aGA~~Vd~Tv~GlGERaGNa 324 (623)
+.++..|+|.+|++.-=.=.|.|.+
T Consensus 251 ~~~v~~GvD~FD~~~ptr~Ar~G~a 275 (368)
T TIGR00430 251 LNAIRRGIDMFDCVMPTRNARNGTL 275 (368)
T ss_pred HHHHHcCCCEEEecCcccccCCCce
Confidence 8999999999999886544444433
No 391
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.00 E-value=12 Score=37.86 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=63.2
Q ss_pred HHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEee
Q 006969 209 MVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC 288 (623)
Q Consensus 209 ~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~ 288 (623)
..+...+.++-.| +- -.+++...++++++.+.|.+.|-+. +.+| +-.+.|+.+++.+|+ +.|+...
T Consensus 8 ~~~~l~~~~~iaV-~r-----~~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~---~~IGAGT 73 (212)
T PRK05718 8 IEEILRAGPVVPV-IV-----INKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPE---ALIGAGT 73 (212)
T ss_pred HHHHHHHCCEEEE-EE-----cCCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCC---CEEEEee
Confidence 3455566664222 21 2467899999999999999999886 5666 466788999998884 6788776
Q ss_pred cCCcchHHHHHHHHHHhCCCEEEe
Q 006969 289 QNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 289 HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
=-+. .-+..|+++||+.+=+
T Consensus 74 Vl~~----~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 74 VLNP----EQLAQAIEAGAQFIVS 93 (212)
T ss_pred ccCH----HHHHHHHHcCCCEEEC
Confidence 5554 6688999999999843
No 392
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=77.79 E-value=75 Score=33.55 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhHc---CCCEEEEe--cCCC-----ChhHHHHHHHHHHHhccccccCCCccceEEeecc-cchhhHHHH
Q 006969 100 SKEKLDIARQLAKL---GVDIIEAG--FPAA-----SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTA 168 (623)
Q Consensus 100 ~e~Kl~Ia~~L~~~---Gvd~IEvG--fP~~-----s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a 168 (623)
.++-.+.++.+.+. |+|.||+- .|.. .-.|.+.+..|.+.+...+ -.|.++=+.. ....++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-----~iPv~vKl~p~~~~~~~~~~ 176 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-----SIPVGVKTPPYTDPAQFDTL 176 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHHH
Confidence 78888999999886 79999994 4542 1124556666655543321 0232222211 122345555
Q ss_pred HHHHhcC--CCCEEEEEecCC---HHHHH-HH--h-------CCCHHHHHHHHHHHHHHHHHc-C--CCeEEEcccCCCC
Q 006969 169 WEAVKYA--KRPRIHTFIATS---GIHME-HK--L-------RKTKQQVVEIARSMVKFARSL-G--CDDVEFSPEDAGR 230 (623)
Q Consensus 169 ~eal~~a--~~~~v~i~~~~S---d~h~~-~~--l-------~~t~ee~l~~~~~~v~~ak~~-G--~~~V~f~~eda~r 230 (623)
.+.+..+ |++.|.++..+. .+|.+ .. + +.|=..+...+.+.|+.+++. + +. |.- .++=
T Consensus 177 a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ip-Iig---~GGI 252 (294)
T cd04741 177 AEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQ-IIG---VGGV 252 (294)
T ss_pred HHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCC-EEE---eCCC
Confidence 5656566 888888776653 23431 11 1 334333344455556655543 1 33 322 2445
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHH
Q 006969 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKA 274 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~ 274 (623)
.+.+.+.+++ .+||+.+-++-..=+.-|+-+.++.+.|.+
T Consensus 253 ~s~~da~e~l----~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 253 LDGRGAFRMR----LAGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred CCHHHHHHHH----HcCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 6666666555 379999999876655679988888888765
No 393
>PRK02227 hypothetical protein; Provisional
Probab=77.62 E-value=31 Score=35.54 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=54.5
Q ss_pred HHHHHHcCCcEEeecC----cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccC
Q 006969 240 LGEVIKVGATTLNIPD----TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 315 (623)
Q Consensus 240 ~~~~~~aGa~~I~l~D----TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~ 315 (623)
+..+.++|+|.|-+.| ..|...|+.++++++.+..+.|- +..|+ -+-.+-|....-++.+...|+++|-+.+.
T Consensus 13 A~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pv--SAtiG-D~p~~p~~~~~aa~~~a~~GvDyVKvGl~ 89 (238)
T PRK02227 13 ALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPV--SATIG-DVPYKPGTISLAALGAAATGADYVKVGLY 89 (238)
T ss_pred HHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCc--eeecc-CCCCCchHHHHHHHHHHhhCCCEEEEcCC
Confidence 4456678999999997 46788899888888887754331 12222 12334577888888889999999999888
Q ss_pred Ccc
Q 006969 316 GIG 318 (623)
Q Consensus 316 GlG 318 (623)
|..
T Consensus 90 ~~~ 92 (238)
T PRK02227 90 GGK 92 (238)
T ss_pred CCC
Confidence 643
No 394
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=77.31 E-value=82 Score=31.47 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchh----------hHHHH
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER----------DIKTA 168 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~----------dI~~a 168 (623)
..++-.++++.+.+.|+..+++ .++++.+.++...+. |.+..+.+--.. +++.+
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~----~~~~~~~~i~~~~~i------------Pil~~~~~~~~~~~~~ig~~~~~~~~a 88 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRA----NGVEDIRAIRARVDL------------PIIGLIKRDYPDSEVYITPTIEEVDAL 88 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEc----CCHHHHHHHHHhCCC------------CEEEEEecCCCCCCceeCCCHHHHHHH
Q ss_pred HHHHhcCCCCEEEEEecC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CCeEEEcccCCCCCCHHHHHHHHHHH
Q 006969 169 WEAVKYAKRPRIHTFIAT----SGIHMEHKLRKTKQQVVEIARSMVKFARSLG-CDDVEFSPEDAGRSDRKFLYEILGEV 243 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~----Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G-~~~V~f~~eda~r~d~e~l~~~~~~~ 243 (623)
.++ |++.|-+-.+. .+ +...+.++.++++| +. +..++ .+++.+ ..+
T Consensus 89 ~~a----Gad~I~~~~~~~~~p~~---------------~~~~~~i~~~~~~g~~~-iiv~v-----~t~~ea----~~a 139 (219)
T cd04729 89 AAA----GADIIALDATDRPRPDG---------------ETLAELIKRIHEEYNCL-LMADI-----STLEEA----LNA 139 (219)
T ss_pred HHc----CCCEEEEeCCCCCCCCC---------------cCHHHHHHHHHHHhCCe-EEEEC-----CCHHHH----HHH
Q ss_pred HHcCCcEE--eecCccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch-HHHHHHHHHHhCCCEE
Q 006969 244 IKVGATTL--NIPDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGARQV 310 (623)
Q Consensus 244 ~~aGa~~I--~l~DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANslaAv~aGA~~V 310 (623)
.++|++.| +..+..+.. ......++++.+++.+ ++++-. ..|. -..|...++.+||+.|
T Consensus 140 ~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~----~ipvia----~GGI~~~~~~~~~l~~GadgV 203 (219)
T cd04729 140 AKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL----GIPVIA----EGRINSPEQAAKALELGADAV 203 (219)
T ss_pred HHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc----CCCEEE----eCCCCCHHHHHHHHHCCCCEE
No 395
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=77.11 E-value=89 Score=32.61 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhHcCCCEEEEec-CCCChhH--HHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCC
Q 006969 101 KEKLDIARQLAKLGVDIIEAGF-PAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvGf-P~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~ 177 (623)
+.-++-++.|.++|+|.|-+.+ |..+..+ .+..+.|.+..+-. -++-+++-.+ ++..++..+..+...|+
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~------~i~Hlt~r~~-n~~~l~~~L~~~~~~Gi 87 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIP------TVPHLTCIGA-TREEIREILREYRELGI 87 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCC------eeEEeeecCC-CHHHHHHHHHHHHHCCC
Confidence 5556778889999999999987 4433322 34555555432211 1244544443 45567766666777899
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC-e--EEEccc-CCCCCCHHHHHHHHHHHHHcCCcEEee
Q 006969 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD-D--VEFSPE-DAGRSDRKFLYEILGEVIKVGATTLNI 253 (623)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~-~--V~f~~e-da~r~d~e~l~~~~~~~~~aGa~~I~l 253 (623)
..|-....-.+... .-..+..+..+.++|+++++..-. . +...|| .....+.+.-++.+++=.++||+.+.
T Consensus 88 ~nvL~l~GD~~~~~----~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~i- 162 (272)
T TIGR00676 88 RHILALRGDPPKGE----GTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAI- 162 (272)
T ss_pred CEEEEeCCCCCCCC----CCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEe-
Confidence 88765544332100 001112344567778888876222 1 234565 12223444444555555689998544
Q ss_pred cCcccccCHHHHHHHHHHHHHh
Q 006969 254 PDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 254 ~DTvG~~~P~~v~~li~~l~~~ 275 (623)
|==+..++.+.++++.+++.
T Consensus 163 --TQ~~fd~~~~~~~~~~~~~~ 182 (272)
T TIGR00676 163 --TQLFFDNDDYYRFVDRCRAA 182 (272)
T ss_pred --eccccCHHHHHHHHHHHHHc
Confidence 55556788888899988875
No 396
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=77.08 E-value=19 Score=37.49 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=57.1
Q ss_pred EEEccc---CCCC-CCHHHHHHHHHHHHHcCCcEEeec------CcccccCHHHHHHH---HHHHHHhCCCCcceeEEEe
Q 006969 221 VEFSPE---DAGR-SDRKFLYEILGEVIKVGATTLNIP------DTVGITMPTEFGKL---IADIKANTPGIENVVISTH 287 (623)
Q Consensus 221 V~f~~e---da~r-~d~e~l~~~~~~~~~aGa~~I~l~------DTvG~~~P~~v~~l---i~~l~~~~~~~~~v~i~~H 287 (623)
+..+|+ |+++ .+++.+++.++...+.||+.|-+. +..+...-+|+.++ |+.+++.+ +++|++=
T Consensus 7 lN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSID 82 (257)
T cd00739 7 LNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL----DVLISVD 82 (257)
T ss_pred EcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEEe
Confidence 345554 5554 689999999999999999999983 33344444555554 56666654 3678775
Q ss_pred ecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 288 CQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 288 ~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
.=| ..-..+|+++|++.|+--
T Consensus 83 T~~-----~~v~e~al~~G~~iINdi 103 (257)
T cd00739 83 TFR-----AEVARAALEAGADIINDV 103 (257)
T ss_pred CCC-----HHHHHHHHHhCCCEEEeC
Confidence 444 344567888999998643
No 397
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=77.04 E-value=86 Score=32.71 Aligned_cols=138 Identities=22% Similarity=0.196 Sum_probs=86.1
Q ss_pred CCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEE--eecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHH
Q 006969 115 VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHME 192 (623)
Q Consensus 115 vd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~--~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~ 192 (623)
+|.|.+|-. +-+.++.++.+.+.- . |++. ++. ...++..-+.|.+...|.+.|.+.---. .+
T Consensus 93 vDilQIgAr--n~rn~~LL~a~g~t~-k---------pV~lKrG~~-~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf-- 156 (258)
T TIGR01362 93 VDIIQIPAF--LCRQTDLLVAAAKTG-R---------IVNVKKGQF-LSPWDMKNVVEKVLSTGNKNILLCERGT-SF-- 156 (258)
T ss_pred CcEEEeCch--hcchHHHHHHHhccC-C---------eEEecCCCc-CCHHHHHHHHHHHHHcCCCcEEEEeCCC-Cc--
Confidence 677777632 234466677666531 1 1110 111 2456676777877777888765532111 11
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC----------CCCCHHHHHHHHHHHHHcCCcEEe----------
Q 006969 193 HKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA----------GRSDRKFLYEILGEVIKVGATTLN---------- 252 (623)
Q Consensus 193 ~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda----------~r~d~e~l~~~~~~~~~aGa~~I~---------- 252 (623)
+.++ -.++ ...+-..|+.++. |.|+|--+ +--..+++..++++++.+|||.+.
T Consensus 157 ---~y~r-~~~D--~~~ip~~k~~~~P-Vi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~A 229 (258)
T TIGR01362 157 ---GYNN-LVVD--MRSLPIMRELGCP-VIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNA 229 (258)
T ss_pred ---CCCC-cccc--hhhhHHHHhcCCC-EEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCcccc
Confidence 1110 0011 1344555777886 88876432 234679999999999999999775
Q ss_pred ecCcccccCHHHHHHHHHHHHHh
Q 006969 253 IPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 253 l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
++|--=.++|.++.++++.+++.
T Consensus 230 lsDg~q~l~~~~~~~ll~~l~~i 252 (258)
T TIGR01362 230 KSDGPNMLPLSELEGLLEKLLAI 252 (258)
T ss_pred CCCccccCCHHHHHHHHHHHHHH
Confidence 57999999999999999998864
No 398
>PLN02417 dihydrodipicolinate synthase
Probab=76.90 E-value=41 Score=35.20 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCC-cEEeecCcccccCHHH
Q 006969 204 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA-TTLNIPDTVGITMPTE 264 (623)
Q Consensus 204 ~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa-~~I~l~DTvG~~~P~~ 264 (623)
+.+.+.++.|++.|.+.|...|-...+.+.+.+.+.++.+.++.. -..++|...|...+.+
T Consensus 83 ~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~P~~tg~~l~~~ 144 (280)
T PLN02417 83 REAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNVPGRTGQDIPPE 144 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEChhHhCcCCCHH
Confidence 445667788888898766664445566677888888888777651 2345666677665543
No 399
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=76.81 E-value=38 Score=37.10 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=64.1
Q ss_pred EEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHH
Q 006969 221 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANT 299 (623)
Q Consensus 221 V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANs 299 (623)
..|.+..++ .+++.-.+.++.+.+.+.+.+.|.--...-.++++.++|..++..+|. +.|. |. +|.|. .+.
T Consensus 178 ~lfgiVqGg-~~~dLR~~sa~~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~~~~lP~--~kPr--yl---~Gvg~P~~i 249 (367)
T TIGR00449 178 ALFGIVQGG-TYPDLRRQSAEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAPLLPK--DKPR--YL---MGVGTPELL 249 (367)
T ss_pred eEEEEecCC-CCHHHHHHHHHHHhhCCCCeEEEeCcccCCCHHHHHHHHHHHHhhCCc--ccce--Ee---cCCCCHHHH
Confidence 456665443 344444456788888888888886632223458899999999998885 2343 33 56665 678
Q ss_pred HHHHHhCCCEEEeccCCccCccC
Q 006969 300 IAGACAGARQVEVTINGIGERAG 322 (623)
Q Consensus 300 laAv~aGA~~Vd~Tv~GlGERaG 322 (623)
+.++..|+|.+|++.-=.=.|.|
T Consensus 250 ~~~v~~GvD~FD~~~ptr~Ar~G 272 (367)
T TIGR00449 250 ANAVSLGIDMFDCVAPTRYARNG 272 (367)
T ss_pred HHHHHcCCCEEeeCCccccccCC
Confidence 99999999999998865444444
No 400
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=76.81 E-value=33 Score=34.78 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=92.0
Q ss_pred HHHHHHhHcCCCEEEE----e-c-CCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 006969 105 DIARQLAKLGVDIIEA----G-F-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEv----G-f-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~ 178 (623)
+-++.|.+.|+|+|=+ | | |.-+- -.+.++.+.+...+. + +-++-.. ++-++-++.+..+|.+
T Consensus 16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn~tf-g~~~i~~i~~~~~~~--------~-~dvHLMv--~~p~~~i~~~~~~gad 83 (220)
T PRK08883 16 EDVEKVLAAGADVVHFDVMDNHYVPNLTF-GAPICKALRDYGITA--------P-IDVHLMV--KPVDRIIPDFAKAGAS 83 (220)
T ss_pred HHHHHHHHcCCCEEEEecccCcccCcccc-CHHHHHHHHHhCCCC--------C-EEEEecc--CCHHHHHHHHHHhCCC
Confidence 4456677789987755 3 3 43211 123555555431111 1 1111111 1223334445556888
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEcccCCCCCCHHHHHHHHHHHHHcCCcEEee----
Q 006969 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI---- 253 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~-V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l---- 253 (623)
.|.+ |.+. .....+.++++|++|++. +.++|. |+.+.+..++..+ |.|.+
T Consensus 84 ~i~~-------H~Ea---------~~~~~~~l~~ik~~g~k~GlalnP~----Tp~~~i~~~l~~~-----D~vlvMtV~ 138 (220)
T PRK08883 84 MITF-------HVEA---------SEHVDRTLQLIKEHGCQAGVVLNPA----TPLHHLEYIMDKV-----DLILLMSVN 138 (220)
T ss_pred EEEE-------cccC---------cccHHHHHHHHHHcCCcEEEEeCCC----CCHHHHHHHHHhC-----CeEEEEEec
Confidence 8775 3331 123456788999999873 456773 7778777776643 33322
Q ss_pred cCcccc-cCHHHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 254 PDTVGI-TMPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 254 ~DTvG~-~~P~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
|.+-|- ..|. ..+.|+.+++..+... +++|.+ |-|.-..|.-..+++||+.+
T Consensus 139 PGfgGq~fi~~-~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aGAd~v 192 (220)
T PRK08883 139 PGFGGQSFIPH-TLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAGADMF 192 (220)
T ss_pred CCCCCceecHh-HHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 344443 3443 4446666666543100 255665 89999999999999999997
No 401
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=76.79 E-value=20 Score=36.49 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=57.3
Q ss_pred EEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch-HHHHHH
Q 006969 222 EFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTI 300 (623)
Q Consensus 222 ~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANsl 300 (623)
.|.+. -+-.+.+.-.+.++.+.+.+.+.+.|.--.......++.++|..+...+|. +.+. |. +|. .-.+.+
T Consensus 57 l~gvI-qGg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~--~~pr--~l---~G~~~P~~i~ 128 (238)
T PF01702_consen 57 LFGVI-QGGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPP--DKPR--YL---LGVGTPEEIL 128 (238)
T ss_dssp EEEEE---TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-T--TS-E--EE---TTB-SHHHHH
T ss_pred eeeee-CCCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCc--ccce--ec---cCCCCHHHHH
Confidence 45543 334556666777888888668889887766555788999999999998885 3454 34 343 466889
Q ss_pred HHHHhCCCEEEeccC
Q 006969 301 AGACAGARQVEVTIN 315 (623)
Q Consensus 301 aAv~aGA~~Vd~Tv~ 315 (623)
.++..|+|.+|++..
T Consensus 129 ~~v~~GvD~fDs~~p 143 (238)
T PF01702_consen 129 EAVYLGVDLFDSSYP 143 (238)
T ss_dssp HHHHTT--EEEESHH
T ss_pred HHHHcCCcEEcchHH
Confidence 999999999999865
No 402
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=76.78 E-value=88 Score=31.95 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=101.3
Q ss_pred HHHHHHHHHhHcCCCEEEEecC---CCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 006969 102 EKLDIARQLAKLGVDIIEAGFP---AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 102 ~Kl~Ia~~L~~~Gvd~IEvGfP---~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~ 178 (623)
+=+++++.+.+.|++.|=+--- ...+..++.+++|++.+.- |...+=+-.+.+|++..+++ |++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~---------pv~vgGGirs~edv~~~l~~----Ga~ 99 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDV---------KVELSGGIRDDESLEAALAT----GCA 99 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCC---------CEEEcCCCCCHHHHHHHHHC----CCC
Confidence 5677999999999987755211 1122346888988886421 22233233367888877764 888
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc---c---CCCCCCHHHHHHHHHHHHHcCCcEEe
Q 006969 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP---E---DAGRSDRKFLYEILGEVIKVGATTLN 252 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~---e---da~r~d~e~l~~~~~~~~~aGa~~I~ 252 (623)
++.+ .+.- -+..+.+.++++...+. + .+.+.. . .+...+...+.++++.+.++|++.|.
T Consensus 100 kvvi--Gs~~-----------l~~p~l~~~i~~~~~~~-i-~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~ii 164 (241)
T PRK14024 100 RVNI--GTAA-----------LENPEWCARVIAEHGDR-V-AVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYV 164 (241)
T ss_pred EEEE--CchH-----------hCCHHHHHHHHHHhhhh-E-EEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEE
Confidence 8754 2211 11123344444433322 1 011111 0 11111234567888889999999888
Q ss_pred ecCc--ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH----hCCCEEEeccCCccCccCcccH
Q 006969 253 IPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC----AGARQVEVTINGIGERAGNASL 326 (623)
Q Consensus 253 l~DT--vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~----aGA~~Vd~Tv~GlGERaGNa~l 326 (623)
+-|- .|...+. =.++++.+++..+ +|+-.- -|.....-+..+. .||+ +-+.|-+=-.|..++
T Consensus 165 v~~~~~~g~~~G~-d~~~i~~i~~~~~----ipvias----GGi~s~~D~~~l~~~~~~Gvd---gV~igra~~~g~~~~ 232 (241)
T PRK14024 165 VTDVTKDGTLTGP-NLELLREVCARTD----APVVAS----GGVSSLDDLRALAELVPLGVE---GAIVGKALYAGAFTL 232 (241)
T ss_pred EEeecCCCCccCC-CHHHHHHHHhhCC----CCEEEe----CCCCCHHHHHHHhhhccCCcc---EEEEeHHHHcCCCCH
Confidence 7754 3444443 3566777777653 345442 2222233333321 3544 446665555566777
Q ss_pred HHHHH
Q 006969 327 EEVVM 331 (623)
Q Consensus 327 Eevv~ 331 (623)
+++..
T Consensus 233 ~~~~~ 237 (241)
T PRK14024 233 PEALA 237 (241)
T ss_pred HHHHH
Confidence 76543
No 403
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=76.62 E-value=4.3 Score=43.75 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=76.7
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--cccCCCCCCHHHHHHHHHHHH-HcCCcEEeecCcccccCHHHHHHHH
Q 006969 193 HKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SPEDAGRSDRKFLYEILGEVI-KVGATTLNIPDTVGITMPTEFGKLI 269 (623)
Q Consensus 193 ~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f--~~eda~r~d~e~l~~~~~~~~-~aGa~~I~l~DTvG~~~P~~v~~li 269 (623)
....++.+++++ .++.|++.|....++ +..+ ...+++++.++++.+. +.| +-+|=|.|.+++++..++-
T Consensus 80 ~~~l~~~eeIle----~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~---le~c~slG~l~~eq~~~L~ 151 (335)
T COG0502 80 ARKLMEVEEILE----AAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELG---LEVCASLGMLTEEQAEKLA 151 (335)
T ss_pred hhhcCCHHHHHH----HHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcC---cHHhhccCCCCHHHHHHHH
Confidence 345567776665 556778888432333 2222 2378899999999998 556 7788899999999988887
Q ss_pred HHHHHhCCC-------CcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccC
Q 006969 270 ADIKANTPG-------IENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (623)
Q Consensus 270 ~~l~~~~~~-------~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGE 319 (623)
..=...+-. .-+-.+.-|.+.|+=-= -..+-++|-..-.+.|.||||
T Consensus 152 ~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~t---l~~vk~~Gi~vcsGgI~GlGE 205 (335)
T COG0502 152 DAGVDRYNHNLETSPEFYENIITTRTYEDRLNT---LENVREAGIEVCSGGIVGLGE 205 (335)
T ss_pred HcChhheecccccCHHHHcccCCCCCHHHHHHH---HHHHHHcCCccccceEecCCC
Confidence 653322110 00123566777776322 234566799999999999999
No 404
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=76.28 E-value=7.1 Score=41.64 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCcEEeecCccccc---CHHHHHHHH----HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH-Hh
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGIT---MPTEFGKLI----ADIKANTPGIENVVISTHCQNDLGLSTANTIAGA-CA 305 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~---~P~~v~~li----~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv-~a 305 (623)
+.+.+.+++..++||+.|.++|+.+.. .|+++.+++ +.+.+.+.. .++.+|.+.+. .+.+..+ +.
T Consensus 171 ~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~---~~~ilh~cG~~----~~~l~~~~~~ 243 (326)
T cd03307 171 EACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG---CPTILHICGNT----TPILEYIAQC 243 (326)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc---CCcEEEECCCC----hhHHHHHHHc
Confidence 345566777788999999999998643 899988776 333333432 35677866543 2334433 45
Q ss_pred CCCEEEeccCCccCccCcccHHHHHHHHH
Q 006969 306 GARQVEVTINGIGERAGNASLEEVVMAFK 334 (623)
Q Consensus 306 GA~~Vd~Tv~GlGERaGNa~lEevv~~L~ 334 (623)
|++.+. +..+ .+++++...+.
T Consensus 244 g~d~~~-----~d~~---~dl~e~~~~~g 264 (326)
T cd03307 244 GFDGIS-----VDEK---VDVKTAKEIVG 264 (326)
T ss_pred CCCeec-----cccc---CCHHHHHHHcC
Confidence 887653 2222 37777654443
No 405
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=76.28 E-value=11 Score=40.16 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHH----HHHHHhCCCCcceeEEEeecCCcchHHHHHHH-HHHhC
Q 006969 235 FLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLI----ADIKANTPGIENVVISTHCQNDLGLSTANTIA-GACAG 306 (623)
Q Consensus 235 ~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li----~~l~~~~~~~~~v~i~~H~HND~GlAvANsla-Av~aG 306 (623)
.+.+.+++.+++||+.|.+.|+.+ .+.|+++.+++ +.+.+.+.. . +..+|++-+.. +.+. -.+.|
T Consensus 181 ~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~--~-~~ilH~cG~~~----~~l~~~~~~g 253 (339)
T PRK06252 181 FCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKG--L-PTILHICGDLT----SILEEMADCG 253 (339)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhcc--C-CcEEEECCCch----HHHHHHHhcC
Confidence 445666777889999999999875 67999988775 334444432 1 45678765432 2233 23468
Q ss_pred CCEEEeccCCccCccCcccHHHHHHHH
Q 006969 307 ARQVEVTINGIGERAGNASLEEVVMAF 333 (623)
Q Consensus 307 A~~Vd~Tv~GlGERaGNa~lEevv~~L 333 (623)
++.+. +.++ .+++++...+
T Consensus 254 ~d~~~-----~d~~---~dl~~~~~~~ 272 (339)
T PRK06252 254 FDGIS-----IDEK---VDVKTAKENV 272 (339)
T ss_pred CCeec-----cCCC---CCHHHHHHHh
Confidence 87653 2332 3777765444
No 406
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=76.22 E-value=78 Score=33.70 Aligned_cols=141 Identities=12% Similarity=0.026 Sum_probs=75.1
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHc-CCCeEEE--cccCCCCCCHHH
Q 006969 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKL-RKTKQQVVEIARSMVKFARSL-GCDDVEF--SPEDAGRSDRKF 235 (623)
Q Consensus 160 ~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l-~~t~ee~l~~~~~~v~~ak~~-G~~~V~f--~~eda~r~d~e~ 235 (623)
..++++..+.+.+..+|.+.|.+-....--++..+. |....+..+.+.+.++.+++. ++. |.+ ... ...+...
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~p-v~vKir~g--~~~~~~~ 148 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIP-VTVKIRIG--WDDAHIN 148 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCC-EEEEEEcc--cCCCcch
Confidence 456777777777777899998886654322222222 222233345555566655543 333 322 211 1111234
Q ss_pred HHHHHHHHHHcCCcEEeecC-cc--cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH-HHHHHHHH-HhCCCEE
Q 006969 236 LYEILGEVIKVGATTLNIPD-TV--GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGA-CAGARQV 310 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~D-Tv--G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlA-vANslaAv-~aGA~~V 310 (623)
..++++.+.++|++.|.+-- |. |+.-| -..+.++.+++.++ +||.. +-|.. ..-+..++ ..||+.|
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~-~~~~~i~~i~~~~~----ipvi~----nGgI~~~~da~~~l~~~gad~V 219 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGE-ANWDIIARVKQAVR----IPVIG----NGDIFSPEDAKAMLETTGCDGV 219 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCc-hhHHHHHHHHHcCC----CcEEE----eCCCCCHHHHHHHHHhhCCCEE
Confidence 56888889999999997731 11 12222 23567788887764 34432 12222 23445555 4678777
Q ss_pred Ee
Q 006969 311 EV 312 (623)
Q Consensus 311 d~ 312 (623)
-.
T Consensus 220 mi 221 (319)
T TIGR00737 220 MI 221 (319)
T ss_pred EE
Confidence 54
No 407
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.01 E-value=28 Score=36.98 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCcEEeecCccccc-----C-----------------HHHHHHHHHHHHHhCCCCcceeEEEeec--C
Q 006969 235 FLYEILGEVIKVGATTLNIPDTVGIT-----M-----------------PTEFGKLIADIKANTPGIENVVISTHCQ--N 290 (623)
Q Consensus 235 ~l~~~~~~~~~aGa~~I~l~DTvG~~-----~-----------------P~~v~~li~~l~~~~~~~~~v~i~~H~H--N 290 (623)
.+.+.++.+.++|.|.|-|-=..|++ . +..+.++++.+++.++. +++|++-.+ +
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~--d~~i~vris~~~ 219 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGP--DFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCC--CceEEEEechhc
Confidence 34455667778899987774333432 1 23457889999998853 356666443 2
Q ss_pred ------CcchHHHHHHHHHHhCCCEEEeccCC
Q 006969 291 ------DLGLSTANTIAGACAGARQVEVTING 316 (623)
Q Consensus 291 ------D~GlAvANslaAv~aGA~~Vd~Tv~G 316 (623)
+.--++.-+-...++|+++|+++-..
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 22223333445567899999988654
No 408
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=75.87 E-value=24 Score=36.89 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=71.3
Q ss_pred EcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHH
Q 006969 223 FSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANT 299 (623)
Q Consensus 223 f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANs 299 (623)
+.|-+.+..|.+-+.+.++.+++.|++.|.++-|+|= ++.+|-.++++.+.+... ++..++ .+++.--++.-+
T Consensus 9 ~TPf~~g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~---~vi~gv-g~~~~~~ai~~a 84 (279)
T cd00953 9 ITPFTGNKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD---KVIFQV-GSLNLEESIELA 84 (279)
T ss_pred ecCcCCCCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC---CEEEEe-CcCCHHHHHHHH
Confidence 3454447889999999999999999999999999985 578888899988887763 244333 357777788888
Q ss_pred HHHHHhCCCEEEeccCC
Q 006969 300 IAGACAGARQVEVTING 316 (623)
Q Consensus 300 laAv~aGA~~Vd~Tv~G 316 (623)
..|.++||+.|=+.---
T Consensus 85 ~~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 85 RAAKSFGIYAIASLPPY 101 (279)
T ss_pred HHHHHcCCCEEEEeCCc
Confidence 99999999998765543
No 409
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=75.85 E-value=56 Score=35.24 Aligned_cols=114 Identities=18% Similarity=0.320 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcC-CcEEeecCccc--ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCC
Q 006969 232 DRKFLYEILGEVIKVG-ATTLNIPDTVG--ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 308 (623)
Q Consensus 232 d~e~l~~~~~~~~~aG-a~~I~l~DTvG--~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~ 308 (623)
|+|||++.++.+++.. -..=..=|-.| .+.|. +.++|..+++. ++.+ .+++..|-. =|.---.-+-.+||-+
T Consensus 142 d~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~-l~~lVqalk~~-~~v~--vVSmQTng~-~L~~~lv~eLeeAGLd 216 (414)
T COG2100 142 DPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPH-LVDLVQALKEH-KGVE--VVSMQTNGV-LLSKKLVDELEEAGLD 216 (414)
T ss_pred cHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchh-HHHHHHHHhcC-CCce--EEEEeeCce-eccHHHHHHHHHhCCc
Confidence 7899999999988763 22223335554 23333 66777777764 6543 455555432 2222233345578999
Q ss_pred EEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHHHHHHHHhCCCC
Q 006969 309 QVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHV 368 (623)
Q Consensus 309 ~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~i 368 (623)
+|+.|++-+-+ .++..|. |. ..+|.++..++++++.. +++.+
T Consensus 217 RiNlSv~aLDp--------k~Ak~L~--------G~-~dYdv~kvle~aE~i~~-a~idv 258 (414)
T COG2100 217 RINLSVDALDP--------KLAKMLA--------GR-KDYDVKKVLEVAEYIAN-AGIDV 258 (414)
T ss_pred eEEeecccCCH--------HHHHHhc--------Cc-cccCHHHHHHHHHHHHh-CCCCE
Confidence 99999997654 3444444 32 35788888888888887 66644
No 410
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=75.84 E-value=1.2e+02 Score=32.74 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHhHcCCCEEEEec-----------CCC----------------ChhHHHHHHHHHHHhccccccCCCccceEEee
Q 006969 105 DIARQLAKLGVDIIEAGF-----------PAA----------------SKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGf-----------P~~----------------s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 157 (623)
+.++.+.++|+-.|+++. |.. ++.-..+++++.+..... |.+..+
T Consensus 73 ~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~--------pvivsI 144 (344)
T PRK05286 73 EAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGI--------PLGINI 144 (344)
T ss_pred HHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCC--------cEEEEE
Q ss_pred ccc-------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-----cCCCeEEEcc
Q 006969 158 SRC-------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS-----LGCDDVEFSP 225 (623)
Q Consensus 158 ~r~-------~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~-----~G~~~V~f~~ 225 (623)
+-. ..+|+...++.+.. +++.+.+-++....--... ....+.+..+.+.|+.+.. .=+- |-+++
T Consensus 145 ~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~--~~~~~~~~eiv~aVr~~~~~~~~~~PV~-vKlsp 220 (344)
T PRK05286 145 GKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRD--LQYGEALDELLAALKEAQAELHGYVPLL-VKIAP 220 (344)
T ss_pred ecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCccc--ccCHHHHHHHHHHHHHHHhccccCCceE-EEeCC
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEEeecCcc----------------cccCHH---HHHHHHHHHHHhCCCCcceeEEE
Q 006969 226 EDAGRSDRKFLYEILGEVIKVGATTLNIPDTV----------------GITMPT---EFGKLIADIKANTPGIENVVIST 286 (623)
Q Consensus 226 eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTv----------------G~~~P~---~v~~li~~l~~~~~~~~~v~i~~ 286 (623)
..+.+.+.++++++.++|+|.|.+-.|. |+.-|. ..-+.+..+++++++ +++|..
T Consensus 221 ----~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~--~ipIig 294 (344)
T PRK05286 221 ----DLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGG--RLPIIG 294 (344)
T ss_pred ----CCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCC--CCCEEE
Q ss_pred eecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 287 HCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 287 H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
=.=-..+ .-+.+.+++||+.|..+
T Consensus 295 ~GGI~s~---eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 295 VGGIDSA---EDAYEKIRAGASLVQIY 318 (344)
T ss_pred ECCCCCH---HHHHHHHHcCCCHHHHH
No 411
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.81 E-value=45 Score=34.25 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=68.0
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc-----CCCCCC-----
Q 006969 164 DIKTAWEAVKYAKRPRIHTFIATSGIHME-HKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-----DAGRSD----- 232 (623)
Q Consensus 164 dI~~a~eal~~a~~~~v~i~~~~Sd~h~~-~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e-----da~r~d----- 232 (623)
.++.+++.++.+|.+.|-+.... .|.. ....++. +.+.+..+.+++.|+....+++- ..+..|
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~--~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~ 90 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDE--SDERLARLDWSK----EERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRE 90 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCC--cccccccccCCH----HHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHH
Confidence 45666666777799988875432 2211 1123333 23456667888999873333210 111123
Q ss_pred --HHHHHHHHHHHHHcCCcEEeecCcccc---cCHHHHHHHHHHHHHhCC--CCcceeEEEeecCC
Q 006969 233 --RKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTP--GIENVVISTHCQND 291 (623)
Q Consensus 233 --~e~l~~~~~~~~~aGa~~I~l~DTvG~---~~P~~v~~li~~l~~~~~--~~~~v~i~~H~HND 291 (623)
.+++.++++.+.+.|++.|+++-.... ..+....++++.+++..+ ...++.|.+|.|+.
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~ 156 (284)
T PRK13210 91 RALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDT 156 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCc
Confidence 356788888899999999998622111 123444555555444221 11147788888853
No 412
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=75.79 E-value=21 Score=36.79 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=88.1
Q ss_pred HHHHhHcC--CCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEe--e-ccc-chhhHHHHHHHHhcCCCCEE
Q 006969 107 ARQLAKLG--VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG--L-SRC-NERDIKTAWEAVKYAKRPRI 180 (623)
Q Consensus 107 a~~L~~~G--vd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~--~-~r~-~~~dI~~a~eal~~a~~~~v 180 (623)
-..|.-+| ||.+=.||..+.-.+.+.+++..+..... + +....| | ..+ ...-++.-++..+..|.+.|
T Consensus 15 ~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~-----~-V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 15 EDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDY-----G-IKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHc-----C-CeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 33444455 78888888654433334555554422110 0 011111 0 000 11234444555667799999
Q ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE--EEc---ccCCCCCCHHHHHHHHHHHHHcCCcEE----
Q 006969 181 HTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV--EFS---PEDAGRSDRKFLYEILGEVIKVGATTL---- 251 (623)
Q Consensus 181 ~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V--~f~---~eda~r~d~e~l~~~~~~~~~aGa~~I---- 251 (623)
-+...+-+ ++.+ .-.+.|+.+++.|++ | +++ ++.....+++...+.+++..+|||+.|
T Consensus 89 EiS~G~~~--------i~~~----~~~rlI~~~~~~g~~-v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 89 EISDGSME--------ISLE----ERCNLIERAKDNGFM-VLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred EEcCCccC--------CCHH----HHHHHHHHHHhCCCe-EeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 88765433 3433 345688999999985 3 332 222335788889999999999999754
Q ss_pred -------eecCcccccCHHHHHHHHHHHHHhCCCCcceeEE
Q 006969 252 -------NIPDTVGITMPTEFGKLIADIKANTPGIENVVIS 285 (623)
Q Consensus 252 -------~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~ 285 (623)
.|+|..|-.....+.+++. ++| .+++.++
T Consensus 156 rEsg~~~Gi~~~~g~~r~d~v~~i~~----~l~-~eklifE 191 (237)
T TIGR03849 156 RESGKNIGLFDEKGNVKEDELDVLAE----NVD-INKVIFE 191 (237)
T ss_pred hhcCCCcceeCCCCCCchHHHHHHHh----hCC-hhcEEEE
Confidence 5566666666666666555 455 3445544
No 413
>PLN02461 Probable pyruvate kinase
Probab=75.74 E-value=1.6e+02 Score=33.92 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+|..||..|.+.-.+.|||+|-+.|-. +++|...+|.+....+.. ..+.++| . +++.++.--+-+..
T Consensus 190 ~ltekD~~di~~f~~~~~vD~ia~SFVr-~a~DV~~~r~~l~~~~~~----~~IiAKI---E--~~~av~nl~eIi~~-- 257 (511)
T PLN02461 190 TLTEKDKEDILQWGVPNKIDFIALSFVR-KGSDLVEVRKVLGEHAKS----ILLISKV---E--NQEGLDNFDDILAE-- 257 (511)
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEECCCC-CHHHHHHHHHHHHhCCCC----CCEEEEE---C--CHHHHHHHHHHHHh--
Confidence 3788899888777779999999998874 677877787776542211 1222333 1 33444322222222
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
.+.| .++=-|+=+ -...|++...=++.++.|++.|+. |.. |...-.+-+...+.+++.++.+ |+|.
T Consensus 258 sDgI--MVARGDLGv----Eip~e~vp~~Qk~II~~c~~~gkP-VIvATQmLeSMi~np~PTRAEvsDVanAV~d-G~D~ 329 (511)
T PLN02461 258 SDAF--MVARGDLGM----EIPIEKIFLAQKMMIYKCNLAGKP-VVTATQMLESMIKSPRPTRAEATDVANAVLD-GTDC 329 (511)
T ss_pred cCEE--EEecccccc----ccCHHHhHHHHHHHHHHHHHcCCC-eEEeehhHHHHhhCCCCchHHHHHHHHHHHh-CCcE
Confidence 2333 333333222 135667666667899999999986 543 2223334555667777776654 9999
Q ss_pred Eeec-CcccccCHHHHHHHHHHHHHhC
Q 006969 251 LNIP-DTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 251 I~l~-DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+.|. -|.=...|.+.-+.+..+.+..
T Consensus 330 vMLS~ETA~G~yPveaV~~m~~I~~~a 356 (511)
T PLN02461 330 VMLSGETAAGAYPELAVKTMARICREA 356 (511)
T ss_pred EEEechhcCCCCHHHHHHHHHHHHHHH
Confidence 9997 4666678988877777776543
No 414
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=75.68 E-value=1.1e+02 Score=32.31 Aligned_cols=189 Identities=20% Similarity=0.184 Sum_probs=114.2
Q ss_pred ccCCCCC-C-CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh----hH--HHHHHHHHHHhccccccCCCccceEEeeccc
Q 006969 89 DGEQSPG-A-TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC 160 (623)
Q Consensus 89 DG~Q~~g-~-~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~----~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 160 (623)
++.+..+ + ..+.|.-..|.+.-.+.+-+.|=-.+++.-. .+ ...++.+++..+ +|++.=+--+
T Consensus 15 e~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~---------vPV~lHlDHg 85 (286)
T COG0191 15 ENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG---------VPVALHLDHG 85 (286)
T ss_pred HcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC---------CCEEEECCCC
Confidence 4444433 2 3478999999999999999988776654321 11 244555555421 3554444333
Q ss_pred -chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccC--CC--
Q 006969 161 -NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED--AG-- 229 (623)
Q Consensus 161 -~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~ed--a~-- 229 (623)
..+++..++++ |...|-+=.|. .+.||+++..++.+++|+..|+. |+- +-|| ..
T Consensus 86 ~~~~~~~~ai~~----GFsSvMiDgS~----------~~~eENi~~tkevv~~ah~~gvs-VEaElG~~GG~Edg~~~~~ 150 (286)
T COG0191 86 ASFEDCKQAIRA----GFSSVMIDGSH----------LPFEENIAITKEVVEFAHAYGVS-VEAELGTLGGEEDGVVLYT 150 (286)
T ss_pred CCHHHHHHHHhc----CCceEEecCCc----------CCHHHHHHHHHHHHHHHHHcCCc-EEEEeccccCccCCccccc
Confidence 45566666654 77665442222 35789999999999999999985 543 3444 11
Q ss_pred ----CCCHHHHHHHHHHHHHcCCcEE--eecCcccccCHH---HHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 006969 230 ----RSDRKFLYEILGEVIKVGATTL--NIPDTVGITMPT---EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (623)
Q Consensus 230 ----r~d~e~l~~~~~~~~~aGa~~I--~l~DTvG~~~P~---~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsl 300 (623)
-+||+...+++ .+-|.|.+ .|.-.=|.-.|. -=.++++.+++.++ +||-+|.= .|.....-.
T Consensus 151 ~~~~~tdp~ea~~fv---~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~----~PlVlHGg--SGip~~eI~ 221 (286)
T COG0191 151 DPADLTDPEEALEFV---ERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS----LPLVLHGG--SGIPDEEIR 221 (286)
T ss_pred chhhhCCHHHHHHHH---hccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC----CCEEEeCC--CCCCHHHHH
Confidence 34555444443 34466654 333444544432 22356677777664 56777754 477777777
Q ss_pred HHHHhCCCEE
Q 006969 301 AGACAGARQV 310 (623)
Q Consensus 301 aAv~aGA~~V 310 (623)
.|+..|+.-|
T Consensus 222 ~aI~~GV~Kv 231 (286)
T COG0191 222 EAIKLGVAKV 231 (286)
T ss_pred HHHHhCceEE
Confidence 7777777666
No 415
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=75.49 E-value=62 Score=34.70 Aligned_cols=97 Identities=23% Similarity=0.237 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHcCCC-eEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCH------------------
Q 006969 202 VVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMP------------------ 262 (623)
Q Consensus 202 ~l~~~~~~v~~ak~~G~~-~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P------------------ 262 (623)
.++++.+.|+...+. . .|-.+| +.+.+.++++++.++|+|.|.+-.|+.....
T Consensus 148 ~l~~l~~~vk~~~~~--Pv~vKl~P------~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS 219 (310)
T COG0167 148 LLEKLLEAVKAATKV--PVFVKLAP------NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS 219 (310)
T ss_pred HHHHHHHHHHhcccC--ceEEEeCC------CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC
Confidence 355555444444332 2 133465 6688899999999999999988887773221
Q ss_pred -----HHHHHHHHHHHHhCCCCcceeE-EEeecCCcchH-HHHHHHHHHhCCCEEEec
Q 006969 263 -----TEFGKLIADIKANTPGIENVVI-STHCQNDLGLS-TANTIAGACAGARQVEVT 313 (623)
Q Consensus 263 -----~~v~~li~~l~~~~~~~~~v~i-~~H~HND~GlA-vANslaAv~aGA~~Vd~T 313 (623)
..--++|+.+.+++.+ +++| ++= |-- ...+++=+.|||+.|++.
T Consensus 220 G~~ikp~al~~v~~l~~~~~~--~ipIIGvG-----GI~s~~DA~E~i~aGA~~vQv~ 270 (310)
T COG0167 220 GPPLKPIALRVVAELYKRLGG--DIPIIGVG-----GIETGEDALEFILAGASAVQVG 270 (310)
T ss_pred cccchHHHHHHHHHHHHhcCC--CCcEEEec-----CcCcHHHHHHHHHcCCchheee
Confidence 1123567777777643 2333 332 222 235788888999888764
No 416
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=75.40 E-value=84 Score=35.82 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=58.8
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHc
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~a 246 (623)
-++.++.+|+.+|.+-+-+.+-.....+|+. -..+.+.++++.+++.|+..|..+..-+ -..+.+.+.+.++.+.+.
T Consensus 271 ~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L 348 (488)
T PRK08207 271 KLEVLKKYGVDRISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKL 348 (488)
T ss_pred HHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 3567788899999997777665566667763 2345667789999999985344333212 145667788888888888
Q ss_pred CCcEEeec
Q 006969 247 GATTLNIP 254 (623)
Q Consensus 247 Ga~~I~l~ 254 (623)
+++.+.+-
T Consensus 349 ~pd~isv~ 356 (488)
T PRK08207 349 NPESLTVH 356 (488)
T ss_pred CcCEEEEE
Confidence 88777653
No 417
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=75.37 E-value=36 Score=35.58 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC---CcEEeecCcccccCHH-----HHHHHHHHHHHhCC
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANTP 277 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG---a~~I~l~DTvG~~~P~-----~v~~li~~l~~~~~ 277 (623)
..++++.+++.+ +.+. .+|-..-.+..+.+.++.+| ..++.|.|++.+-.-+ .+..-++.+|+.++
T Consensus 103 t~~~v~~~~~~~---~~i~---~TRKt~Pg~r~l~k~Av~~GGg~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~ 176 (265)
T TIGR00078 103 TRKYVEAARGTN---VRIA---DTRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAAP 176 (265)
T ss_pred HHHHHHHhcCCC---eEEE---ecCCCChhhhHHHHHHHHhcCCcccCCCcccceeeeccHHHHhCCHHHHHHHHHHhCC
Confidence 345556665544 2222 24665566777777777764 3578888866543221 24556888898887
Q ss_pred CCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcccccccccccCCChhHHHHHH
Q 006969 278 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS 357 (623)
Q Consensus 278 ~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s 357 (623)
. ..+|++=+|| +.-++.|.++|||+|-. ||...|++-...+.......--..-||+++.+.++.
T Consensus 177 ~--~~~Igvev~t-----~eea~~A~~~gaDyI~l---------d~~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a 240 (265)
T TIGR00078 177 F--ALKIEVEVES-----LEEAEEAAEAGADIIML---------DNMKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYA 240 (265)
T ss_pred C--CCeEEEEeCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHH
Confidence 4 2467777886 36788999999999865 667667666555432110000123478888877665
Q ss_pred H
Q 006969 358 K 358 (623)
Q Consensus 358 ~ 358 (623)
+
T Consensus 241 ~ 241 (265)
T TIGR00078 241 E 241 (265)
T ss_pred H
Confidence 3
No 418
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=75.33 E-value=1.2e+02 Score=32.59 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=19.4
Q ss_pred HHHHHHHHhHcCCCEEEEecCC---CChhHH
Q 006969 103 KLDIARQLAKLGVDIIEAGFPA---ASKEDF 130 (623)
Q Consensus 103 Kl~Ia~~L~~~Gvd~IEvGfP~---~s~~d~ 130 (623)
-+++++.+.++|+|.|-++-|. -+|+.|
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f 218 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDSWAGALSPADY 218 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCHHHH
Confidence 4556676778999999887552 356665
No 419
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=75.29 E-value=50 Score=36.02 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=65.3
Q ss_pred chhhHH-HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHH
Q 006969 161 NERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 238 (623)
Q Consensus 161 ~~~dI~-~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~ 238 (623)
+++++. .-++.++.+|+.+|.+-+-+.+-.....+|+.. ..+.+.++++.+++.|+..|.++...+ ..-+.+.+.+
T Consensus 97 ~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~ 174 (370)
T PRK06294 97 NPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIV 174 (370)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHH
Confidence 555553 336778888999999977777767777777642 245566788999999986555544433 2346778888
Q ss_pred HHHHHHHcCCcEEee
Q 006969 239 ILGEVIKVGATTLNI 253 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l 253 (623)
.++.+.+.+++.|.+
T Consensus 175 ~l~~~~~l~~~~is~ 189 (370)
T PRK06294 175 DLHQAITLPITHISL 189 (370)
T ss_pred HHHHHHccCCCeEEE
Confidence 999999999987775
No 420
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=75.22 E-value=30 Score=35.97 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=55.8
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHH
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLR------KTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIK 245 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~------~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~ 245 (623)
..+|++.|.+ .+.-....+| .|.+|++..+....+-+ ....|..+.+.+ +..+++.+.+-+.++.+
T Consensus 29 e~aG~d~i~v----Gds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~---~~p~viaD~~fg~y~~~~~~av~~a~r~~~ 101 (254)
T cd06557 29 DEAGVDVILV----GDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA---PRALVVADMPFGSYQTSPEQALRNAARLMK 101 (254)
T ss_pred HHcCCCEEEE----CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCeEEEeCCCCcccCCHHHHHHHHHHHHH
Confidence 3468888742 2222222344 47777766655444433 223355555533 44568887777666666
Q ss_pred -cCCcEEeecCcccccCHHHHHHHHHHHHHh
Q 006969 246 -VGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 246 -aGa~~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
+||+.|+|-|. .++.+.|+.+++.
T Consensus 102 ~aGa~aVkiEd~------~~~~~~I~al~~a 126 (254)
T cd06557 102 EAGADAVKLEGG------AEVAETIRALVDA 126 (254)
T ss_pred HhCCeEEEEcCc------HHHHHHHHHHHHc
Confidence 99999999996 3777888888764
No 421
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=75.20 E-value=5.6 Score=42.91 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCcEEeecC-cccccCHHHHHHHH
Q 006969 234 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLI 269 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~D-TvG~~~P~~v~~li 269 (623)
+.+.+.+++.+++||+.|.++| +.+.+.|+++.+++
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~ 222 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFV 222 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHH
Confidence 4566777778889999999999 56677888877654
No 422
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=75.12 E-value=31 Score=34.85 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH-HHhcCC
Q 006969 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE-AVKYAK 176 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e-al~~a~ 176 (623)
.+.++-+++++.|.. .++.+|+|+|--...-.+.++.|.+..++. +.++-+ ...||..... .+..+|
T Consensus 13 ~~~~~a~~l~~~l~~-~v~~~kvG~~l~~~~G~~~i~~lk~~~~~~--------~v~~DL---K~~Di~~~v~~~~~~~G 80 (216)
T PRK13306 13 QDLESAIEDAKKVAE-EVDIIEVGTILLLAEGMKAVRVLRALYPDK--------IIVADT---KIADAGKILAKMAFEAG 80 (216)
T ss_pred CCHHHHHHHHHHccc-cCCEEEEChHHHHHhCHHHHHHHHHHCCCC--------EEEEEE---eecCCcHHHHHHHHHCC
Confidence 467888999999987 479999998853332346777777753221 222222 2235544322 344568
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC 218 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~ 218 (623)
++.+.+.....+ +++.++++.+++.|.
T Consensus 81 ad~vTvH~~a~~---------------~~i~~~~~~~~~~g~ 107 (216)
T PRK13306 81 ADWVTVICAAHI---------------PTIKAALKVAKEFNG 107 (216)
T ss_pred CCEEEEeCCCCH---------------HHHHHHHHHHHHcCC
Confidence 887766543322 344566666666675
No 423
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=74.96 E-value=1.3e+02 Score=33.52 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=10.6
Q ss_pred cCcccHHHHHHHHHh
Q 006969 321 AGNASLEEVVMAFKC 335 (623)
Q Consensus 321 aGNa~lEevv~~L~~ 335 (623)
.|+..++.+...++.
T Consensus 365 ~G~Ig~~~f~~l~~~ 379 (413)
T PTZ00372 365 KGKLGMETFKFIMNS 379 (413)
T ss_pred CCCcChHHHHHHHhC
Confidence 477888877777763
No 424
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=74.90 E-value=22 Score=36.36 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=73.9
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEcccCCCCCCHHHHHHHHHHHHHc
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~-V~f~~eda~r~d~e~l~~~~~~~~~a 246 (623)
-++.+..+|.+.|.+-.-+.+ ......++++|++|++. +.++|. |+.+.+..++..+--.
T Consensus 74 ~i~~~~~aGad~it~H~Ea~~---------------~~~~~~i~~Ik~~G~kaGlalnP~----T~~~~l~~~l~~vD~V 134 (229)
T PRK09722 74 YIDQLADAGADFITLHPETIN---------------GQAFRLIDEIRRAGMKVGLVLNPE----TPVESIKYYIHLLDKI 134 (229)
T ss_pred HHHHHHHcCCCEEEECccCCc---------------chHHHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHhcCEE
Confidence 344455568888776332211 12346789999999862 456773 7778887777754211
Q ss_pred CCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 247 GATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 247 Ga~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
=.-.++ |.-.|-..=.++.+-|+.+|+..+.. .+.+-.==|-|.-..|.-...++||+.+=
T Consensus 135 LvMsV~-PGf~GQ~fi~~~l~KI~~lr~~~~~~---~~~~~IeVDGGI~~~~i~~~~~aGad~~V 195 (229)
T PRK09722 135 TVMTVD-PGFAGQPFIPEMLDKIAELKALRERN---GLEYLIEVDGSCNQKTYEKLMEAGADVFI 195 (229)
T ss_pred EEEEEc-CCCcchhccHHHHHHHHHHHHHHHhc---CCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 111222 44555555555666777777654321 12222334788989999999999999873
No 425
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=74.75 E-value=73 Score=33.46 Aligned_cols=165 Identities=21% Similarity=0.171 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHhHcC--CCEEEE--ecCCCCh------hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHH
Q 006969 97 TLTSKEKLDIARQLAKLG--VDIIEA--GFPAASK------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~G--vd~IEv--GfP~~s~------~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (623)
..+.++-.++++.+.++| +|.||+ |.|.... ++.+.+.++.+.+...+ . .|..+= .+...+++.
T Consensus 99 g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~----~-~pv~vK-i~~~~~~~~ 172 (300)
T TIGR01037 99 GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT----D-VPVFAK-LSPNVTDIT 172 (300)
T ss_pred cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc----C-CCEEEE-CCCChhhHH
Confidence 357899999999999874 999999 4464321 23455555554443221 0 122211 123344554
Q ss_pred HHHHHHhcCCCCEEEEEecCCHH--HHHH--------HhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEcccCCCCCCHHH
Q 006969 167 TAWEAVKYAKRPRIHTFIATSGI--HMEH--------KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKF 235 (623)
Q Consensus 167 ~a~eal~~a~~~~v~i~~~~Sd~--h~~~--------~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~eda~r~d~e~ 235 (623)
...+.+..+|++.|++...+... .... .=+.+-........+.+..+++. ++. |.. .++=.+++.
T Consensus 173 ~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ip-vi~---~GGI~s~~d 248 (300)
T TIGR01037 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIP-IIG---VGGITSFED 248 (300)
T ss_pred HHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCC-EEE---ECCCCCHHH
Confidence 44555667899999876433210 0000 00122222222234455555553 333 322 244567776
Q ss_pred HHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhC
Q 006969 236 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+.+++ ++|||.|.++= .=...|+-+.++.+.+.+.+
T Consensus 249 a~~~l----~~GAd~V~igr-~~l~~p~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 249 ALEFL----MAGASAVQVGT-AVYYRGFAFKKIIEGLIAFL 284 (300)
T ss_pred HHHHH----HcCCCceeecH-HHhcCchHHHHHHHHHHHHH
Confidence 66655 46888877652 22346777777777766543
No 426
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.65 E-value=60 Score=33.56 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc-CC--cEEeecCcccccCHHH
Q 006969 209 MVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GA--TTLNIPDTVGITMPTE 264 (623)
Q Consensus 209 ~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a-Ga--~~I~l~DTvG~~~P~~ 264 (623)
.++.+.+.|.+.+.+ +-..+...|+.+.++++.+.+. +. -.+=.=||.|.++..-
T Consensus 146 ~~~~~~~~G~d~i~l-~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~ 203 (263)
T cd07943 146 QAKLMESYGADCVYV-TDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANS 203 (263)
T ss_pred HHHHHHHcCCCEEEE-cCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHH
Confidence 344444556543332 1124455666666666655543 22 0122226666554443
No 427
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=74.62 E-value=66 Score=35.22 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=62.0
Q ss_pred chhhHH-HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHH
Q 006969 161 NERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 238 (623)
Q Consensus 161 ~~~dI~-~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~ 238 (623)
++.++. .-++.++.+|+.+|.+=+-+.+-...+.+|+.. ..+.+.++++.+++.+.. |.++...+ ...+.+.+.+
T Consensus 98 ~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~--~~~~~~~ai~~~~~~~~~-v~~dli~GlPgqt~~~~~~ 174 (380)
T PRK09057 98 NPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLH--SVAEALAAIDLAREIFPR-VSFDLIYARPGQTLAAWRA 174 (380)
T ss_pred CcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHhCcc-EEEEeecCCCCCCHHHHHH
Confidence 455554 336677888999999987777767777777642 234555677888887653 66655433 2456666777
Q ss_pred HHHHHHHcCCcEEeec
Q 006969 239 ILGEVIKVGATTLNIP 254 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~ 254 (623)
-++.+.+.+++.|.+-
T Consensus 175 ~l~~~~~l~p~~is~y 190 (380)
T PRK09057 175 ELKEALSLAADHLSLY 190 (380)
T ss_pred HHHHHHhcCCCeEEee
Confidence 7888888999887764
No 428
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=74.52 E-value=29 Score=38.10 Aligned_cols=119 Identities=15% Similarity=0.258 Sum_probs=66.4
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHH
Q 006969 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (623)
Q Consensus 159 r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~ 238 (623)
+++...|+.+.+.+. .++.|.+|...+ |. |..|.--+..==-+|.+++|+. .|++- -++..|+.+
T Consensus 123 Panl~gI~a~~~~~P--~~~~VavFDTaF--Hq------Tmpe~ay~YalP~~~y~~~gIR--rYGFH---GtSh~YVs~ 187 (396)
T COG0282 123 PANLIGIEAALKLFP--NAKQVAVFDTAF--HQ------TMPEEAYLYALPYELYEKYGIR--RYGFH---GTSHKYVSQ 187 (396)
T ss_pred hHhHHHHHHHHHHCC--CCCEEEEEcchh--hc------cCChhhheecCCHHHHHhcCce--ecccC---ccchHHHHH
Confidence 356778888877654 556788886543 32 3322111111112456677765 45432 355566655
Q ss_pred HHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccC---
Q 006969 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN--- 315 (623)
Q Consensus 239 ~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~--- 315 (623)
-+.....-. +.+. -.|..|. |-..|+.|+..| +-||+|.+
T Consensus 188 ~aa~~L~k~----------------------------~~~l--~~I~~HL------GNGASicAiknG-kSvDTSMGfTP 230 (396)
T COG0282 188 RAAEILGKP----------------------------LEDL--NLITCHL------GNGASICAIKNG-KSVDTSMGFTP 230 (396)
T ss_pred HHHHHhCCC----------------------------cccc--CEEEEEe------cCchhhhhhhCC-eeeccCCCCCc
Confidence 444433211 1111 1355553 334688999999 67998864
Q ss_pred --C--ccCccCcccHHHH
Q 006969 316 --G--IGERAGNASLEEV 329 (623)
Q Consensus 316 --G--lGERaGNa~lEev 329 (623)
| ||.|+|+.+.--+
T Consensus 231 LeGl~MGTRsGdiDP~ii 248 (396)
T COG0282 231 LEGLMMGTRSGDIDPGII 248 (396)
T ss_pred ccceeccCCCCCCChHHH
Confidence 3 5899999877533
No 429
>PRK03906 mannonate dehydratase; Provisional
Probab=74.51 E-value=43 Score=37.00 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=36.0
Q ss_pred CHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEccc---CCCCCCH
Q 006969 187 SGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRSDR 233 (623)
Q Consensus 187 Sd~h~~~~l~~-t~ee~l~~~~~~v~~ak~~G~~~V~f~~e---da~r~d~ 233 (623)
.++|-..|++. ++++.++...++++-+-..|++.++|+++ |-+|++.
T Consensus 65 ~pv~~~Ik~g~~~rd~~ie~y~~sirnlg~~GI~~icYnfmpv~dwtrt~l 115 (385)
T PRK03906 65 VPVHEDIKTGTPNRDRYIENYKQTLRNLAAAGIKVVCYNFMPVFDWTRTDL 115 (385)
T ss_pred CCccHHHHcCCCCHHHHHHHHHHHHHHHHhcCCcEEEecCcccccccCccc
Confidence 44565666664 68999999999999999999998888765 4556554
No 430
>PRK14057 epimerase; Provisional
Probab=74.40 E-value=1.2e+02 Score=31.76 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhC
Q 006969 199 KQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 199 ~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~ 276 (623)
.++.++++.++-++.++.|+. +.+.. |++-.. +.++.+.++|||.+... | +......+.+.++.+++.+
T Consensus 173 i~~~l~KI~~lr~~~~~~~~~-~~IeV-DGGI~~-----~ti~~l~~aGad~~V~G-S-alF~~~d~~~~i~~l~~~~ 241 (254)
T PRK14057 173 SSDLHERVAQLLCLLGDKREG-KIIVI-DGSLTQ-----DQLPSLIAQGIDRVVSG-S-ALFRDDRLVENTRSWRAMF 241 (254)
T ss_pred cHHHHHHHHHHHHHHHhcCCC-ceEEE-ECCCCH-----HHHHHHHHCCCCEEEEC-h-HhhCCCCHHHHHHHHHHHH
Confidence 467788888888888888864 33333 565443 46677889999998876 3 2332334666666666543
No 431
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=74.24 E-value=65 Score=33.70 Aligned_cols=103 Identities=22% Similarity=0.234 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEE----ccc--CCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHH
Q 006969 199 KQQVVEIARSMVKFARSLGCDDVEF----SPE--DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADI 272 (623)
Q Consensus 199 ~ee~l~~~~~~v~~ak~~G~~~V~f----~~e--da~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l 272 (623)
..|.++.+.+.++.|.++|+..|.+ ++- |....|++.+....+.+.+.|||.|-..= ...|+.|++.|+..
T Consensus 125 e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~y---tg~~e~F~~vv~~~ 201 (265)
T COG1830 125 EREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKY---TGDPESFRRVVAAC 201 (265)
T ss_pred hHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecC---CCChHHHHHHHHhC
Confidence 3577899999999999999975543 221 22357888998899999999999886421 12346677766664
Q ss_pred HHhCCCCcceeEEEeec-CCcchHHHHHHHHHHhCCCEE
Q 006969 273 KANTPGIENVVISTHCQ-NDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 273 ~~~~~~~~~v~i~~H~H-ND~GlAvANslaAv~aGA~~V 310 (623)
. .| +.+.==.- ++.--.+.-.-.|+++||..+
T Consensus 202 ~--vp----VviaGG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 202 G--VP----VVIAGGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred C--CC----EEEeCCCCCCChHHHHHHHHHHHHccCcch
Confidence 4 32 23322222 244556777788888888765
No 432
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=74.17 E-value=92 Score=32.44 Aligned_cols=55 Identities=5% Similarity=0.092 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc-C--Cc-EEeecCcccccCHH
Q 006969 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-G--AT-TLNIPDTVGITMPT 263 (623)
Q Consensus 208 ~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a-G--a~-~I~l~DTvG~~~P~ 263 (623)
+.++.+.+.|.+.+.+.= -.+...|+.+.++++.+.+. + .. .+=.=|+.|.++-.
T Consensus 142 ~~~~~~~~~g~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN 200 (266)
T cd07944 142 ELLELVNEIKPDVFYIVD-SFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALAN 200 (266)
T ss_pred HHHHHHHhCCCCEEEEec-CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHH
Confidence 344444555655333321 24455666666666666543 2 11 22223666655444
No 433
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=74.16 E-value=1.1e+02 Score=31.40 Aligned_cols=145 Identities=12% Similarity=0.002 Sum_probs=80.1
Q ss_pred eEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHH-----HHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--cc
Q 006969 153 VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHME-----HKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SP 225 (623)
Q Consensus 153 ~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~-----~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f--~~ 225 (623)
.+.-+.-..++++..+.+.+.. +.+.|.+-....---+. ..|.+++ +.+.+.++.+++.++. |.+ .+
T Consensus 70 vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp----~~l~~iv~av~~~~~P-VsvKiR~ 143 (231)
T TIGR00736 70 VSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNK----ELLKEFLTKMKELNKP-IFVKIRG 143 (231)
T ss_pred EEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCH----HHHHHHHHHHHcCCCc-EEEEeCC
Confidence 3333333356666666555443 56777765443221111 0122333 3455666666666654 443 44
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 006969 226 EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (623)
Q Consensus 226 eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 305 (623)
.. +.....++++.+.++|++.|.+ |..=...|.--.+.|+.+++.+++ +||-- |.-=....-+++.+++
T Consensus 144 ~~----~~~~~~~~a~~l~~aGad~i~V-d~~~~g~~~a~~~~I~~i~~~~~~---ipIIg---NGgI~s~eda~e~l~~ 212 (231)
T TIGR00736 144 NC----IPLDELIDALNLVDDGFDGIHV-DAMYPGKPYADMDLLKILSEEFND---KIIIG---NNSIDDIESAKEMLKA 212 (231)
T ss_pred CC----CcchHHHHHHHHHHcCCCEEEE-eeCCCCCchhhHHHHHHHHHhcCC---CcEEE---ECCcCCHHHHHHHHHh
Confidence 21 2245678999999999999988 421111222346788889988743 33322 2211224566777888
Q ss_pred CCCEEEecc
Q 006969 306 GARQVEVTI 314 (623)
Q Consensus 306 GA~~Vd~Tv 314 (623)
||+.|...=
T Consensus 213 GAd~VmvgR 221 (231)
T TIGR00736 213 GADFVSVAR 221 (231)
T ss_pred CCCeEEEcH
Confidence 999886643
No 434
>PLN02389 biotin synthase
Probab=74.15 E-value=15 Score=40.43 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEc--ccCCCC--CCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHH
Q 006969 197 KTKQQVVEIARSMVKFARSLGCDDVEFS--PEDAGR--SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADI 272 (623)
Q Consensus 197 ~t~ee~l~~~~~~v~~ak~~G~~~V~f~--~eda~r--~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l 272 (623)
++.||+++. ++.+++.|...+++. .-+... .+.+++.++++.+.+.|. .++=|.|.++++++.+|-+.
T Consensus 116 Ls~EeIl~~----a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l---~i~~s~G~l~~E~l~~LkeA- 187 (379)
T PLN02389 116 MSKDDVLEA----AKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGM---EVCCTLGMLEKEQAAQLKEA- 187 (379)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCc---EEEECCCCCCHHHHHHHHHc-
Confidence 577776664 445566787654431 101112 346888899998876664 35568998888877776544
Q ss_pred HHhCCCCcceeEE----------EeecCCcchHHHHHHHHHHhCCCEEEeccCCccC
Q 006969 273 KANTPGIENVVIS----------THCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (623)
Q Consensus 273 ~~~~~~~~~v~i~----------~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGE 319 (623)
+.+.+.+. +|+..++---+.....|.++|...--+-|.|+||
T Consensus 188 -----Gld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgE 239 (379)
T PLN02389 188 -----GLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGE 239 (379)
T ss_pred -----CCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCC
Confidence 11111122 2223355555667778888898777778899987
No 435
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=74.13 E-value=14 Score=39.07 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCC
Q 006969 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~G 316 (623)
..-++.+.++|+|.| |-....+| ..+++..+|+.+. +++-.-|-| +..++.++..||+.|-+|
T Consensus 86 ~~Ea~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f~----~~fmad~~~-----l~EAlrai~~GadmI~Tt--- 148 (293)
T PRK04180 86 FVEAQILEALGVDYI---DESEVLTP--ADEEYHIDKWDFT----VPFVCGARN-----LGEALRRIAEGAAMIRTK--- 148 (293)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHcC----CCEEccCCC-----HHHHHHHHHCCCCeeecc---
Confidence 344677889999999 88888999 5688999998882 566655555 778999999999999888
Q ss_pred ccC-ccCcc
Q 006969 317 IGE-RAGNA 324 (623)
Q Consensus 317 lGE-RaGNa 324 (623)
|| ++||+
T Consensus 149 -ge~gtg~v 156 (293)
T PRK04180 149 -GEAGTGNV 156 (293)
T ss_pred -CCCCCccH
Confidence 34 45665
No 436
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=73.93 E-value=1.2e+02 Score=31.72 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhh-HHHHH
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (623)
.+..+.-.++++.|.+.||+-|=+ | |+.-+.+|+ +.++...+.. + ..+.+.+..+.++ ++.+
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~---------~vi~gvg~~~~~~ai~~a- 84 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-D---------KVIFQVGSLNLEESIELA- 84 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-C---------CEEEEeCcCCHHHHHHHH-
Confidence 378888899999999999999877 3 466666665 4445555543 1 1355555444444 3433
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCCeEEEcccC--CCCCCHHHHHHHHHHHHHc
Q 006969 170 EAVKYAKRPRIHTFIATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~Sd~h~~~~l~-~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed--a~r~d~e~l~~~~~~~~~a 246 (623)
+..+.+|++.+-+..|-. +. .+.+++.+-..+..+ ++..+.|+... +...+++.+.+ +.+.
T Consensus 85 ~~a~~~Gad~v~v~~P~y-------~~~~~~~~i~~yf~~v~~-----~lpv~iYn~P~~tg~~l~~~~l~~----L~~~ 148 (279)
T cd00953 85 RAAKSFGIYAIASLPPYY-------FPGIPEEWLIKYFTDISS-----PYPTFIYNYPKATGYDINARMAKE----IKKA 148 (279)
T ss_pred HHHHHcCCCEEEEeCCcC-------CCCCCHHHHHHHHHHHHh-----cCCEEEEeCccccCCCCCHHHHHH----HHhc
Confidence 334567999887655532 12 245555554444444 45545564323 23456665544 4444
Q ss_pred CCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccH
Q 006969 247 GATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASL 326 (623)
Q Consensus 247 Ga~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~l 326 (623)
....+.+.||.|-. .++.++ ++..++ +.+-+=+| ...+.++.+||+.. +.| .+|+-.
T Consensus 149 ~p~vvgiK~s~~d~--~~~~~~----~~~~~~-----~~v~~G~d-----~~~~~~l~~Ga~G~---i~~----~~n~~P 205 (279)
T cd00953 149 GGDIIGVKDTNEDI--SHMLEY----KRLVPD-----FKVYSGPD-----SLIFSALRSGLDGS---VAA----ASNYLP 205 (279)
T ss_pred CCCEEEEEeCccCH--HHHHHH----HHhCCC-----eEEEEccH-----HHHHHHHHcCCCeE---Eec----hhhccH
Confidence 56899999997743 333333 233332 33333222 35567788897765 444 457777
Q ss_pred HHHHHHHH
Q 006969 327 EEVVMAFK 334 (623)
Q Consensus 327 Eevv~~L~ 334 (623)
|.++...+
T Consensus 206 ~~~~~l~~ 213 (279)
T cd00953 206 EVFVKIKD 213 (279)
T ss_pred HHHHHHHH
Confidence 77665544
No 437
>PRK06247 pyruvate kinase; Provisional
Probab=73.91 E-value=1.7e+02 Score=33.39 Aligned_cols=156 Identities=26% Similarity=0.318 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.||..|+..| +...+.|||+|=+.|.. +++|...+|.+... .. ...+.| . +++.++.. +.+...
T Consensus 170 ~ltekD~~di-~f~~~~~vD~ia~SFVr-~a~Di~~~r~~l~~---~~----~iiaKI---E--t~eav~nl-deI~~~- 233 (476)
T PRK06247 170 ALTEKDRADL-EFALELGVDWVALSFVQ-RPEDVEEVRKIIGG---RV----PVMAKI---E--KPQAIDRL-EAIVEA- 233 (476)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEECCCC-CHHHHHHHHHHhhh---cC----eEEEEE---C--CHHHHHhH-HHHHHH-
Confidence 3778888776 56778999999998874 56776666666532 10 112222 1 23334322 222221
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
.+. ++++-.|+=++ +..+++.....+.++.|+++|+. |.+ |...-.+-+...+-+++.++.+ |+|.
T Consensus 234 ~Dg--ImVaRGDLgve----~g~~~v~~~qk~ii~~~~~~gkp-vI~ATQmLeSM~~np~PTRAEvtDVaNAV~d-G~Da 305 (476)
T PRK06247 234 SDA--IMVARGDLGVE----VPLEQVPLIQKRIIRAARRAGKP-VVVATQMLESMIENPVPTRAEVSDVATAVLD-GADA 305 (476)
T ss_pred cCE--EEEccchhccc----cCHHHHHHHHHHHHHHHHHhCCC-EEEECchHHHhhcCCCCCcchhHHHHHHHHh-CCcE
Confidence 344 45666665443 34477778888999999999986 433 2222333444556677776654 9999
Q ss_pred Eeec-CcccccCHHHHHHHHHHHHHhC
Q 006969 251 LNIP-DTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 251 I~l~-DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+-|. -|.=...|.+.-+.+..+....
T Consensus 306 vMLS~ETA~G~yPveaV~~m~~I~~~a 332 (476)
T PRK06247 306 VMLSAETASGKYPVEAVRTMARIIRQV 332 (476)
T ss_pred EEEcchhcCCCCHHHHHHHHHHHHHHH
Confidence 9997 5666788988888877776654
No 438
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=73.81 E-value=82 Score=32.95 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=71.4
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC----------CC
Q 006969 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA----------GR 230 (623)
Q Consensus 161 ~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda----------~r 230 (623)
..+|..-+.|.+...|.+.|.+.---. .+ +.++ -+++ ...+-..|+.++. |.|+|--+ +-
T Consensus 136 t~~e~~~aaeyi~~~Gn~~vilcERG~-tf-----~y~r-~~~D--~~~vp~~k~~~lP-Vi~DpSHsvq~pg~~~~~s~ 205 (264)
T PRK05198 136 APWDMKNVVDKVREAGNDKIILCERGT-SF-----GYNN-LVVD--MRGLPIMRETGAP-VIFDATHSVQLPGGQGGSSG 205 (264)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeCCC-Cc-----CCCC-eeec--hhhhHHHhhCCCC-EEEeCCccccCCCCCCCCCC
Confidence 456777777777777877765532111 11 1110 0011 1345566778876 88876432 23
Q ss_pred CCHHHHHHHHHHHHHcCCcEEe----------ecCcccccCHHHHHHHHHHHHHh
Q 006969 231 SDRKFLYEILGEVIKVGATTLN----------IPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 231 ~d~e~l~~~~~~~~~aGa~~I~----------l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
-..+|+..++++++.+|||.+. ++|--=.++|.++.++++.+++.
T Consensus 206 G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~~i 260 (264)
T PRK05198 206 GQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLEQLKAI 260 (264)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHHHH
Confidence 4678999999999999999775 57999999999999999998864
No 439
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=73.77 E-value=19 Score=40.95 Aligned_cols=70 Identities=24% Similarity=0.201 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 006969 236 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv 314 (623)
-.+.++++.++|++.|.+-++-|. +..+.+.++.+++.+|+ ++|.+ -.++-...+..++++||+.|.+.+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~---~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPD---VQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCC---CCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 368889999999998865444455 46788999999999874 45655 345556678899999999999644
No 440
>PRK09358 adenosine deaminase; Provisional
Probab=73.76 E-value=1e+02 Score=32.98 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=79.2
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCCeEEE--cccCCCCCCHHHHHHHHHHHHH--cCC-
Q 006969 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR-SLGCDDVEF--SPEDAGRSDRKFLYEILGEVIK--VGA- 248 (623)
Q Consensus 175 a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak-~~G~~~V~f--~~eda~r~d~e~l~~~~~~~~~--aGa- 248 (623)
.|+..+.++.. +. .....+.+.++.++.+.+.++.++ +.|+. +.+ +..+ ..+++...+.++.+.+ .+.
T Consensus 93 ~Gvty~E~~~~--p~-~~~~~gl~~~~~~~a~~~~~~~a~~~~gi~-~~li~~~~r--~~~~~~~~~~~~~~~~~~~~~~ 166 (340)
T PRK09358 93 DGVVYAEIRFD--PQ-LHTERGLPLEEVVEAVLDGLRAAEAEFGIS-VRLILCFMR--HFGEEAAARELEALAARYRDDG 166 (340)
T ss_pred cCCEEEEEEeC--hh-hhhhcCCCHHHHHHHHHHHHHHHHHhcCce-EEEEEEecC--CCCHHHHHHHHHHHHHHhcCCc
Confidence 47666655543 22 112348899999998888877654 45765 433 3221 1235555555555554 232
Q ss_pred -cEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH-hCCCEEEeccCCccCccCcccH
Q 006969 249 -TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC-AGARQVEVTINGIGERAGNASL 326 (623)
Q Consensus 249 -~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~-aGA~~Vd~Tv~GlGERaGNa~l 326 (623)
-.+.++-.-....|..+.+.++..++. ++++.+|+.-..+ ..+...|++ .|+++| |-|-+.. .-
T Consensus 167 vvg~~l~g~e~~~~~~~~~~~~~~A~~~-----g~~~~~H~~E~~~--~~~~~~al~~lg~~ri-----~Hg~~l~--~~ 232 (340)
T PRK09358 167 VVGFDLAGDELGFPPSKFARAFDRARDA-----GLRLTAHAGEAGG--PESIWEALDELGAERI-----GHGVRAI--ED 232 (340)
T ss_pred EEEEeCCCcCCCCCHHHHHHHHHHHHHC-----CCCeEEcCCCCCc--hhHHHHHHHHcCCccc-----chhhhhc--cC
Confidence 233443221224678888888888774 2568888875433 235556777 788764 3333221 12
Q ss_pred HHHHHHHHhc
Q 006969 327 EEVVMAFKCR 336 (623)
Q Consensus 327 Eevv~~L~~~ 336 (623)
++++..|..+
T Consensus 233 ~~~~~~l~~~ 242 (340)
T PRK09358 233 PALMARLADR 242 (340)
T ss_pred HHHHHHHHHc
Confidence 4556666654
No 441
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.67 E-value=12 Score=35.99 Aligned_cols=115 Identities=11% Similarity=0.082 Sum_probs=63.0
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc-C-C------CCCC------HHHH
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-D-A------GRSD------RKFL 236 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e-d-a------~r~d------~e~l 236 (623)
.++.+|.+.|.+........... ...+.+..+.++++|+..+.+.+. . . .... .+++
T Consensus 3 ~~~~~G~~~vE~~~~~~~~~~~~---------~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 3 AAAEAGFDGVELRFDDGQPWDEK---------DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHTTHSEEEEEHHHHSHHTHH---------HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred HHHHcCCCEEEEecCCCcccccc---------hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHH
Confidence 34556888877754322111100 345667888899999862222211 1 1 1233 6888
Q ss_pred HHHHHHHHHcCCcEEeec-----CcccccCHHHHHHHHHHHHHhCCC--CcceeEEEeecCCcch
Q 006969 237 YEILGEVIKVGATTLNIP-----DTVGITMPTEFGKLIADIKANTPG--IENVVISTHCQNDLGL 294 (623)
Q Consensus 237 ~~~~~~~~~aGa~~I~l~-----DTvG~~~P~~v~~li~~l~~~~~~--~~~v~i~~H~HND~Gl 294 (623)
.+.++.+.+.|++.+.+. ...+.........+++.+++..+- ..++.|.++.|.....
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 999999999999988887 222233334444444444332210 0136788888876543
No 442
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.62 E-value=1.3e+02 Score=31.87 Aligned_cols=164 Identities=12% Similarity=0.037 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~ 178 (623)
++++-.+-++.+.+.|++.|.+=.+.....|.+.++.+.+.++ ... ..+=+-.+-..++..+.++.+...++.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~~g-~~~------l~vD~n~~~~~~~A~~~~~~l~~~~l~ 206 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREAAP-DAR------LRVDANQGWTPEEAVELLRELAELGVE 206 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHhCC-CCe------EEEeCCCCcCHHHHHHHHHHHHhcCCC
Confidence 5677777788888899999998543333556788888887654 210 111111112233433344555555655
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCccc
Q 006969 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG 258 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG 258 (623)
.|.=.++..+ ++. ..+..+..++. +.- |.+-.+++.+. .+.+.++-.+..+|..=
T Consensus 207 ~iEeP~~~~d--------------~~~---~~~L~~~~~ip-Ia~---~E~~~~~~~~~----~~~~~~~~d~v~~~~~~ 261 (316)
T cd03319 207 LIEQPVPAGD--------------DDG---LAYLRDKSPLP-IMA---DESCFSAADAA----RLAGGGAYDGINIKLMK 261 (316)
T ss_pred EEECCCCCCC--------------HHH---HHHHHhcCCCC-EEE---eCCCCCHHHHH----HHHhcCCCCEEEEeccc
Confidence 5532222111 111 11222233333 222 33445555443 33444443344456555
Q ss_pred ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHH
Q 006969 259 ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANT 299 (623)
Q Consensus 259 ~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANs 299 (623)
..-..+..++.....++ ++++.+|+|...+++.+-+
T Consensus 262 ~GGi~~~~~~~~~a~~~-----gi~~~~~~~~~~~i~~~a~ 297 (316)
T cd03319 262 TGGLTEALRIADLARAA-----GLKVMVGCMVESSLSIAAA 297 (316)
T ss_pred cCCHHHHHHHHHHHHHc-----CCCEEEECchhhHHHHHHH
Confidence 55566666666666654 2568888888777776543
No 443
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.48 E-value=36 Score=35.83 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcC---CcEEeecCcccccCH-----HHHHHHHHHHHHhCC
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMP-----TEFGKLIADIKANTP 277 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aG---a~~I~l~DTvG~~~P-----~~v~~li~~l~~~~~ 277 (623)
..++++.++..+ +.+. .+|-..-.+..+.+.++..| ..++.|.|++.+--- ..+.+.++.+|+.+|
T Consensus 107 t~~~v~~~~~~~---~~i~---~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p 180 (273)
T PRK05848 107 TSRYVEALESHK---VKLL---DTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIP 180 (273)
T ss_pred HHHHHHHhcCCC---eEEE---ecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCC
Confidence 345555554422 3332 23655556667777777664 378999999876533 257788999999988
Q ss_pred CCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHHHHHHHHhcc--c-ccccccccCCChhHHH
Q 006969 278 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRG--E-HILGGLYTGINTRHIV 354 (623)
Q Consensus 278 ~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEevv~~L~~~~--~-~~~~G~~t~idl~~L~ 354 (623)
.. .+|.+=+.| ..-++.|+++|+|.|. .=|.+.|++....+... . ...--..-||+++.+.
T Consensus 181 ~~--~~I~VEv~t-----leea~~A~~~GaDiI~---------LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~ 244 (273)
T PRK05848 181 FT--AKIEIECES-----LEEAKNAMNAGADIVM---------CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENIN 244 (273)
T ss_pred CC--ceEEEEeCC-----HHHHHHHHHcCCCEEE---------ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHH
Confidence 42 345555554 5667889999999987 34567777776666421 1 1111234578888877
Q ss_pred HHHH
Q 006969 355 MASK 358 (623)
Q Consensus 355 ~~s~ 358 (623)
+.++
T Consensus 245 ~ya~ 248 (273)
T PRK05848 245 AYAK 248 (273)
T ss_pred HHHH
Confidence 6663
No 444
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=73.33 E-value=1.1e+02 Score=31.37 Aligned_cols=146 Identities=9% Similarity=0.059 Sum_probs=74.9
Q ss_pred HHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecc-cchhhHHHHHHHHhcCCCCEEE
Q 006969 103 KLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTAWEAVKYAKRPRIH 181 (623)
Q Consensus 103 Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a~eal~~a~~~~v~ 181 (623)
=.++++.+.++|.|.|-+=+ -+.+.-.+.++.|.+. +-. ..+.+ ++.. +..+.++.-++ .++.|-
T Consensus 80 P~~~i~~~~~aGad~It~H~-Ea~~~~~~~l~~Ik~~-g~~------~kaGl-alnP~Tp~~~i~~~l~-----~vD~VL 145 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQV-EQTHDLALTIEWLAKQ-KTT------VLIGL-CLCPETPISLLEPYLD-----QIDLIQ 145 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHC-CCC------ceEEE-EECCCCCHHHHHHHHh-----hcCEEE
Confidence 34567778888888776622 1222212455555553 110 01111 1222 22344443333 245554
Q ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccC
Q 006969 182 TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITM 261 (623)
Q Consensus 182 i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~ 261 (623)
+. ++.|-+-- .+=.++.++++.++-++.++.|+. +.+.. |++=.. +.++.+.++|||.+... |. ...
T Consensus 146 iM-tV~PGfgG---Q~f~~~~l~KI~~lr~~~~~~~~~-~~IeV-DGGI~~-----~ti~~l~~aGaD~~V~G-Sa-lF~ 212 (228)
T PRK08091 146 IL-TLDPRTGT---KAPSDLILDRVIQVENRLGNRRVE-KLISI-DGSMTL-----ELASYLKQHQIDWVVSG-SA-LFS 212 (228)
T ss_pred EE-EECCCCCC---ccccHHHHHHHHHHHHHHHhcCCC-ceEEE-ECCCCH-----HHHHHHHHCCCCEEEEC-hh-hhC
Confidence 43 23221110 112456788888888888887764 22222 565443 45677889999998775 22 222
Q ss_pred HHHHHHHHHHHHHh
Q 006969 262 PTEFGKLIADIKAN 275 (623)
Q Consensus 262 P~~v~~li~~l~~~ 275 (623)
-....+.++.++..
T Consensus 213 ~~d~~~~i~~l~~~ 226 (228)
T PRK08091 213 QGELKTTLKEWKSS 226 (228)
T ss_pred CCCHHHHHHHHHHh
Confidence 22366677777653
No 445
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=73.33 E-value=43 Score=35.05 Aligned_cols=90 Identities=10% Similarity=-0.042 Sum_probs=55.4
Q ss_pred hcCCCCEEEEEecCCHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHH-
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKL------RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK- 245 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l------~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~- 245 (623)
..+|++.|-+ ..| -....+ ..|.++.+..++...+-++. ..|..+.-..+..+++...+-+.++.+
T Consensus 32 ~~aG~d~ilv--GdS--lgm~~lG~~~t~~vtldem~~h~~aV~rg~~~---~~vv~DmPf~sy~~~e~a~~na~rl~~e 104 (263)
T TIGR00222 32 ADAGVDVILV--GDS--LGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN---CLIVTDLPFMSYATPEQALKNAARVMQE 104 (263)
T ss_pred HHcCCCEEEE--Ccc--HhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC---ceEEeCCCcCCCCCHHHHHHHHHHHHHH
Confidence 3468887653 222 222333 45788877766655544432 224333333344468888888877776
Q ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHh
Q 006969 246 VGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 246 aGa~~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
+||+.|.|-|. .++.++|+.+.+.
T Consensus 105 aGa~aVkiEgg------~~~~~~i~~l~~~ 128 (263)
T TIGR00222 105 TGANAVKLEGG------EWLVETVQMLTER 128 (263)
T ss_pred hCCeEEEEcCc------HhHHHHHHHHHHC
Confidence 99999999996 4566777777654
No 446
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=73.27 E-value=67 Score=33.46 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc-CCc-EEeecCcccccCHH
Q 006969 207 RSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GAT-TLNIPDTVGITMPT 263 (623)
Q Consensus 207 ~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a-Ga~-~I~l~DTvG~~~P~ 263 (623)
.+.++.+.+.|.+.+.+.= -.+...|+.+.++++.+.+. +.. .+=.=||.|.++..
T Consensus 144 ~~~~~~~~~~g~~~i~l~D-t~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an 201 (262)
T cd07948 144 LRVYRAVDKLGVNRVGIAD-TVGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIAN 201 (262)
T ss_pred HHHHHHHHHcCCCEEEECC-cCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH
Confidence 3455555556655333321 24455666666666665553 211 23334666666444
No 447
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=73.07 E-value=1.3e+02 Score=31.92 Aligned_cols=107 Identities=18% Similarity=0.044 Sum_probs=63.7
Q ss_pred HHHHhcCCC-CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCC-CCCHHHHHHHHHHHHHc
Q 006969 169 WEAVKYAKR-PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKV 246 (623)
Q Consensus 169 ~eal~~a~~-~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~-r~d~e~l~~~~~~~~~a 246 (623)
+..++.+|. .+|.+-+-+.+-.....+++.. ..+.+.++++.+++.|+. |.....-+- --+.+.+.+.++.+.+.
T Consensus 129 L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~--t~~~~~~ai~~l~~~gi~-v~~~lI~GlPget~e~~~~t~~~l~~l 205 (302)
T TIGR01212 129 LAEYVERGYEVWVELGLQTAHDKTLKKINRGH--DFACYVDAVKRARKRGIK-VCSHVILGLPGEDREEMMETAKIVSLL 205 (302)
T ss_pred HHHhhhCCceEEEEEccCcCCHHHHHHHcCcC--hHHHHHHHHHHHHHcCCE-EEEeEEECCCCCCHHHHHHHHHHHHhc
Confidence 344445566 3466654444444445666542 245667889999999985 544332221 24568888899999999
Q ss_pred CCcEEee------cCcc-------cc---cCHHHHHHHHHHHHHhCCC
Q 006969 247 GATTLNI------PDTV-------GI---TMPTEFGKLIADIKANTPG 278 (623)
Q Consensus 247 Ga~~I~l------~DTv-------G~---~~P~~v~~li~~l~~~~~~ 278 (623)
+++.|.+ ++|- |- .+.+++.+.+..+.+++|.
T Consensus 206 ~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~ 253 (302)
T TIGR01212 206 DVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPP 253 (302)
T ss_pred CCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 9887663 3332 22 2335555666666666653
No 448
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=73.02 E-value=1.2e+02 Score=31.18 Aligned_cols=187 Identities=13% Similarity=0.102 Sum_probs=111.0
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeeccc-chhhHH--HHHHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIK--TAWEA 171 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~--~a~ea 171 (623)
....|.++..++.+.-.+.|+.-+-+ +|...+ ..++.+..+ . . ..+..+.+|--. +...++ .+-++
T Consensus 18 k~~~T~~~I~~l~~eA~~~~f~avCV-~P~~V~-------~A~~~l~g~-~-~-~~v~tVigFP~G~~~t~~K~~Ea~~a 86 (228)
T COG0274 18 KPDATEEDIARLCAEAKEYGFAAVCV-NPSYVP-------LAKEALKGS-T-V-VRVCTVIGFPLGANTTAVKAAEAREA 86 (228)
T ss_pred CCCCCHHHHHHHHHHHHhhCceEEEE-CcchHH-------HHHHHhccC-C-C-eEEEEecCCCCCCChHHHHHHHHHHH
Confidence 44578999999999999999999988 676443 333333221 0 0 012333343221 111221 12222
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
...|.+.|.++++.. .......+.+.+.+.+.++.+.+. . .+-+-.|.+.-++ +...+.++.+.++|||-|
T Consensus 87 -i~~GAdEiDmVinig-----~~k~g~~~~V~~eI~~v~~a~~~~-~-~lKVIlEt~~Lt~-ee~~~A~~i~~~aGAdFV 157 (228)
T COG0274 87 -IENGADEIDMVINIG-----ALKSGNWEAVEREIRAVVEACADA-V-VLKVILETGLLTD-EEKRKACEIAIEAGADFV 157 (228)
T ss_pred -HHcCCCeeeeeeeHH-----HHhcCCHHHHHHHHHHHHHHhCCC-c-eEEEEEeccccCH-HHHHHHHHHHHHhCCCEE
Confidence 235899999987643 334456778888888888888764 2 2334455444455 455899999999999876
Q ss_pred eecC--cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 252 NIPD--TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 252 ~l~D--TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
--.= ..|.+||+.+.-+.+.+... +++-.----.. ..-+++-+++|+.+|
T Consensus 158 KTSTGf~~~gAT~edv~lM~~~vg~~--------vgvKaSGGIrt-~eda~~~i~aga~Ri 209 (228)
T COG0274 158 KTSTGFSAGGATVEDVKLMKETVGGR--------VGVKASGGIRT-AEDAKAMIEAGATRI 209 (228)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHhccC--------ceeeccCCcCC-HHHHHHHHHHhHHHh
Confidence 5321 24667888777666665333 33322111111 345677788887765
No 449
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.02 E-value=36 Score=34.76 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=62.3
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-c--ccCC---CC-------
Q 006969 164 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-S--PEDA---GR------- 230 (623)
Q Consensus 164 dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~--~eda---~r------- 230 (623)
+++..++.++.+|.+.|.+..+. ..+ ..+.-+.++++|++ +.. + ..+. .+
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~~~~---------~~~-------~~~~~~~l~~~gl~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFMFPY---------DYD-------IEELKQVLASNKLE-HTLHNLPAGDWAAGERGIACIPG 78 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEcCCC---------CCC-------HHHHHHHHHHcCCc-EEEEcCCCCccccCcCccccCCC
Confidence 56666777778899999985432 122 33444567788987 432 1 1110 10
Q ss_pred -C--CHHHHHHHHHHHHHcCCcEEeecC--cccccCHHH-HHHHHHHHHHh---CCCCcceeEEEeecCC
Q 006969 231 -S--DRKFLYEILGEVIKVGATTLNIPD--TVGITMPTE-FGKLIADIKAN---TPGIENVVISTHCQND 291 (623)
Q Consensus 231 -~--d~e~l~~~~~~~~~aGa~~I~l~D--TvG~~~P~~-v~~li~~l~~~---~~~~~~v~i~~H~HND 291 (623)
. ..+.+.++++.+.+.|+..|.++- ..+...+.+ ...+++.+++. ... .++.|++|.||.
T Consensus 79 ~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~Gv~l~lE~~n~ 147 (258)
T PRK09997 79 REEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMK-EDILLLIEPINH 147 (258)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCEEEEEeCCC
Confidence 0 135578888889999999887742 111123344 33333333332 111 147899999874
No 450
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=73.02 E-value=1.3e+02 Score=31.65 Aligned_cols=193 Identities=13% Similarity=0.116 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHhH-cCCCEEEEe-----cCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHH
Q 006969 98 LTSKEKLDIARQLAK-LGVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 98 ~t~e~Kl~Ia~~L~~-~Gvd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (623)
+..+.-.++++.|.+ .||+-|=++ |+.-+.+|+ +.++...+... +.+|.|++.+....++.-+-.+
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-------~~~~viagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-------GKVKLIAQVGSVNTAEAQELAK 93 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-------CCCCEEecCCCCCHHHHHHHHH
Confidence 788889999999999 999988663 455666665 44455555543 2347788876655555433333
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccC--CCCCCHHHHHHHHHHHHHcCC
Q 006969 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 248 (623)
Q Consensus 171 al~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~ed--a~r~d~e~l~~~~~~~~~aGa 248 (623)
....+|++.+-+..|.. ++.+.+++++-..+.++. .++..+.|+.-. +...+++.+.+++ + -.
T Consensus 94 ~a~~~Gad~v~v~~P~y-------~~~~~~~l~~~f~~va~a---~~lPv~iYn~P~~tg~~l~~~~l~~L~----~-~p 158 (293)
T PRK04147 94 YATELGYDAISAVTPFY-------YPFSFEEICDYYREIIDS---ADNPMIVYNIPALTGVNLSLDQFNELF----T-LP 158 (293)
T ss_pred HHHHcCCCEEEEeCCcC-------CCCCHHHHHHHHHHHHHh---CCCCEEEEeCchhhccCCCHHHHHHHh----c-CC
Confidence 44667999887765542 345667766665555443 344545554322 3345666666554 3 24
Q ss_pred cEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccCCccCccCcccHHH
Q 006969 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (623)
Q Consensus 249 ~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv~GlGERaGNa~lEe 328 (623)
..+.+.|+.|- +..+.+++ +..++. .-+-++++ ..+.++..|++.. +.| .+|.-.+.
T Consensus 159 nvvgiK~s~~d--~~~~~~~~----~~~~~~----~v~~G~d~------~~~~~l~~G~~G~---is~----~~n~~p~~ 215 (293)
T PRK04147 159 KVIGVKQTAGD--LYQLERIR----KAFPDK----LIYNGFDE------MFASGLLAGADGA---IGS----TYNVNGWR 215 (293)
T ss_pred CEEEEEeCCCC--HHHHHHHH----HhCCCC----EEEEeehH------HHHHHHHcCCCEE---Eec----hhhhCHHH
Confidence 78999999873 34444443 334431 12334432 2446678898654 322 56776777
Q ss_pred HHHHHHh
Q 006969 329 VVMAFKC 335 (623)
Q Consensus 329 vv~~L~~ 335 (623)
++...+.
T Consensus 216 ~~~l~~~ 222 (293)
T PRK04147 216 ARQIFEA 222 (293)
T ss_pred HHHHHHH
Confidence 6665553
No 451
>PRK06256 biotin synthase; Validated
Probab=72.98 E-value=42 Score=35.86 Aligned_cols=44 Identities=25% Similarity=0.166 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCcccccCH---HHHHHHHHHHHHh
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMP---TEFGKLIADIKAN 275 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P---~~v~~li~~l~~~ 275 (623)
+++.+++.++.+.+.|+.++.|.++.+.... +.+.++++.+++.
T Consensus 92 s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~ 138 (336)
T PRK06256 92 DIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE 138 (336)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc
Confidence 5566666666666666666665543332221 2455555555554
No 452
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=72.91 E-value=18 Score=36.44 Aligned_cols=97 Identities=25% Similarity=0.237 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHH-HHHH---HHhc
Q 006969 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWE---AVKY 174 (623)
Q Consensus 99 t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~e---al~~ 174 (623)
+.++-+++++.+.. .++.||+|+|--...-.++++++.+.+... + .+.+..+-++...... ...+ ....
T Consensus 11 ~~~~a~~i~~~~~~-~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~-----~-~~I~~D~K~~Dig~t~~~~~~~~~~~~~ 83 (226)
T PF00215_consen 11 DLEEALRIADELGD-YVDIIKVGTPLFLAYGLEALPEIIEELKER-----G-KPIFLDLKLGDIGNTVARYAEAGFAAFE 83 (226)
T ss_dssp SHHHHHHHHHHHGG-GSSEEEEEHHHHHHHCHHHHHHHHHHHHHT-----T-SEEEEEEEE-SSHHHHHHHHHSCHHHHT
T ss_pred CHHHHHHHHHHhcC-cceEEEEChHHHhcCChhhHHHHHHHHHHh-----c-CCEeeeeeecccchHHHHHHHHhhhhhc
Confidence 45888999999988 999999998754333312333333332211 1 3566666554322222 2222 2346
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Q 006969 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG 217 (623)
Q Consensus 175 a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G 217 (623)
.|++.+.+..... .+.+..+++.+++.|
T Consensus 84 ~gaD~vTv~~~~G---------------~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 84 LGADAVTVHPFAG---------------DDTLEAAVKAAKKHG 111 (226)
T ss_dssp TTESEEEEEGTTH---------------HHHHHHHHHHHHHTT
T ss_pred CCCcEEEEeccCC---------------HHHHHHHHHHHhccC
Confidence 7888887765543 366778889999987
No 453
>PRK08444 hypothetical protein; Provisional
Probab=72.84 E-value=9.4 Score=41.55 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCH----HHHHHHHHHHHHhCCCCcceeEEEeecC-----------C
Q 006969 227 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMP----TEFGKLIADIKANTPGIENVVISTHCQN-----------D 291 (623)
Q Consensus 227 da~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P----~~v~~li~~l~~~~~~~~~v~i~~H~HN-----------D 291 (623)
+++..++|.+.+.++.+.+.|+++|.|- .| ..| +.+.++++.+++.+|+ +|.|- -
T Consensus 76 ~~y~ls~eeI~~~a~~a~~~G~~ei~iv--~G-~~p~~~~e~y~e~ir~Ik~~~p~-------i~i~a~s~~Ei~~~a~~ 145 (353)
T PRK08444 76 NPYTMSHEEILEIVKNSVKRGIKEVHIV--SA-HNPNYGYEWYLEIFKKIKEAYPN-------LHVKAMTAAEVDFLSRK 145 (353)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEe--cc-CCCCCCHHHHHHHHHHHHHHCCC-------ceEeeCCHHHHHHHHHH
Confidence 4466788999999999999999999986 23 223 5677899999998874 34554 6
Q ss_pred cchHHHHHHHHH-HhCCCEEEe
Q 006969 292 LGLSTANTIAGA-CAGARQVEV 312 (623)
Q Consensus 292 ~GlAvANslaAv-~aGA~~Vd~ 312 (623)
.|+.+--.+..+ +||.+.+.+
T Consensus 146 ~g~~~~e~l~~LkeAGl~~~~g 167 (353)
T PRK08444 146 FGKSYEEVLEDMLEYGVDSMPG 167 (353)
T ss_pred cCCCHHHHHHHHHHhCcccCCC
Confidence 778776666544 568876543
No 454
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=72.56 E-value=68 Score=33.46 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=12.8
Q ss_pred HHHHhHcCCCEEEEecCC
Q 006969 107 ARQLAKLGVDIIEAGFPA 124 (623)
Q Consensus 107 a~~L~~~Gvd~IEvGfP~ 124 (623)
++.+.+.|++.|-+.+|.
T Consensus 84 ~~~a~~~g~~~i~i~~~~ 101 (273)
T cd07941 84 LQALLEAGTPVVTIFGKS 101 (273)
T ss_pred HHHHHhCCCCEEEEEEcC
Confidence 555667788888887664
No 455
>PRK06354 pyruvate kinase; Provisional
Probab=72.41 E-value=2e+02 Score=33.67 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcC
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 175 (623)
..||.+|+..| +...+.|||+|-+.|-. +++|...++.+.+...+. .....+.| . +++.++.. +.+...
T Consensus 174 p~ltekD~~di-~f~~~~~vD~ia~SFVr-~~~dv~~~r~~l~~~~~~---~~~iiaKI---E--t~eav~nl-deI~~~ 242 (590)
T PRK06354 174 PAITEKDREDL-IFGLEQGVDWIALSFVR-NPSDVLEIRELIEEHNGK---HIPIIAKI---E--KQEAIDNI-DAILEL 242 (590)
T ss_pred CCCCHHHHHHH-HHHHHcCCCEEEEcCCC-CHHHHHHHHHHHHHhcCC---CceEEEEE---C--CHHHHHhH-HHHHHh
Confidence 34788888876 57779999999998874 566766666655321111 00111222 1 33444432 222222
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCCCCCCHHHHHHHHHHHHHcCCc
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGAT 249 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda~r~d~e~l~~~~~~~~~aGa~ 249 (623)
.+. ++++-.|+=++ +..+++-...++.++.|+++|+. |.. |...-.+-+...+-+++.++.+ |+|
T Consensus 243 -~Dg--ImVaRGDLgve----~g~e~v~~~qk~ii~~~~~~gkp-vI~ATqmLeSM~~~p~PTRAEvsDVaNav~D-G~D 313 (590)
T PRK06354 243 -CDG--LMVARGDLGVE----IPAEEVPLLQKRLIKKANRLGKP-VITATQMLDSMQRNPRPTRAEASDVANAILD-GTD 313 (590)
T ss_pred -cCE--EEEccchhhcc----cCcHHHHHHHHHHHHHHHHcCCC-EEEEchhHHHHhhCCCCCchhhHHHHHHhhh-CCc
Confidence 444 45666665443 33677788888999999999986 433 2222334444566677777654 999
Q ss_pred EEeec-CcccccCHHHHHHHHHHHHHh
Q 006969 250 TLNIP-DTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 250 ~I~l~-DTvG~~~P~~v~~li~~l~~~ 275 (623)
.+.|. -|.=...|.+.-+.+..+.+.
T Consensus 314 avMLS~ETA~G~yPveaV~~m~~I~~~ 340 (590)
T PRK06354 314 AVMLSNETAAGDYPVEAVQTMATIAVR 340 (590)
T ss_pred EEEecccccCCCCHHHHHHHHHHHHHH
Confidence 99997 566678898887777777654
No 456
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=72.33 E-value=1e+02 Score=30.19 Aligned_cols=167 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHH
Q 006969 93 SPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (623)
Q Consensus 93 ~~g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 171 (623)
++......++-.+.++.|.+.|++.|++-.+..++.+. +.++.+.+..... .+..+.. +.++.+.++
T Consensus 13 t~~~~~~~~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~---~~~~~a~~~ 80 (212)
T PRK00043 13 TDSRDDSGRDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRY---------GVPLIVN---DRVDLALAV 80 (212)
T ss_pred ECCcccccccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHh---------CCeEEEe---ChHHHHHHc
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 172 l~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
|.+.||+... ......++..+..|.. +..+.... +-+..+.+.|+|.|
T Consensus 81 ----gad~vh~~~~------------------~~~~~~~~~~~~~~~~-~g~~~~t~---------~e~~~a~~~gaD~v 128 (212)
T PRK00043 81 ----GADGVHLGQD------------------DLPVADARALLGPDAI-IGLSTHTL---------EEAAAALAAGADYV 128 (212)
T ss_pred ----CCCEEecCcc------------------cCCHHHHHHHcCCCCE-EEEeCCCH---------HHHHHHhHcCCCEE
Q ss_pred ee----cCcccccCHHHH-HHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 006969 252 NI----PDTVGITMPTEF-GKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 252 ~l----~DTvG~~~P~~v-~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 310 (623)
.+ +.+..-..+... -+.++.+++.+++ ++|..-. |.-..|.-.++.+||+.|
T Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~v~a~G----GI~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 129 GVGPIFPTPTKKDAKAPQGLEGLREIRAAVGD---IPIVAIG----GITPENAPEVLEAGADGV 185 (212)
T ss_pred EECCccCCCCCCCCCCCCCHHHHHHHHHhcCC---CCEEEEC----CcCHHHHHHHHHcCCCEE
No 457
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=72.32 E-value=71 Score=36.24 Aligned_cols=145 Identities=9% Similarity=0.040 Sum_probs=85.8
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--cccCCCCC-CH
Q 006969 158 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHM-EHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SPEDAGRS-DR 233 (623)
Q Consensus 158 ~r~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~-~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f--~~eda~r~-d~ 233 (623)
+|.+.+|+....+++..+|...|.+...++ .+. -+-++-++.|-++.+++.+.. --+....- +. -+++. ..
T Consensus 30 tr~~t~d~l~ia~~ld~~G~~siE~wGGAt-fd~~~rfl~edpwerlr~~r~~~~n---t~lqmLlRG~n~-vgy~~ypd 104 (468)
T PRK12581 30 TRLSIEDMLPVLTILDKIGYYSLECWGGAT-FDACIRFLNEDPWERLRTLKKGLPN---TRLQMLLRGQNL-LGYRHYAD 104 (468)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEecCCcc-hhhhhcccCCCHHHHHHHHHHhCCC---Cceeeeeccccc-cCccCCcc
Confidence 466788888888888888999988875543 232 233556666655555544432 21110100 11 13333 23
Q ss_pred HHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEe---ecCCcchHHHHHHHHHHhCCCEE
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH---CQNDLGLSTANTIAGACAGARQV 310 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H---~HND~GlAvANslaAv~aGA~~V 310 (623)
+.+..+++.+.+.|++++.+.|.. ....-+...|+.+++.-... ...++.= -| +.-.-+.-+..+.++||+.|
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~l--nd~~n~~~ai~~ak~~G~~~-~~~i~yt~sp~~-t~~y~~~~a~~l~~~Gad~I 180 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDAL--NDPRNIQQALRAVKKTGKEA-QLCIAYTTSPVH-TLNYYLSLVKELVEMGADSI 180 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccC--CCHHHHHHHHHHHHHcCCEE-EEEEEEEeCCcC-cHHHHHHHHHHHHHcCCCEE
Confidence 556667888899999999999944 46777888888888742110 1122210 12 33444555666778899986
Q ss_pred E
Q 006969 311 E 311 (623)
Q Consensus 311 d 311 (623)
-
T Consensus 181 ~ 181 (468)
T PRK12581 181 C 181 (468)
T ss_pred E
Confidence 3
No 458
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=72.17 E-value=25 Score=38.33 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHHHc
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~~a 246 (623)
-++.++.+|..+|++-+-+.+-.+...+++.. ..+.+.++++.+++.|+..|.++...+ ...+.+.+.+.++.+.+.
T Consensus 102 ~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~--~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l 179 (377)
T PRK08599 102 KLQVLKDSGVNRISLGVQTFNDELLKKIGRTH--NEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALAL 179 (377)
T ss_pred HHHHHHHcCCCEEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHcc
Confidence 35667788999999987776666666777642 256777899999999986454444322 235667888889999999
Q ss_pred CCcEEee
Q 006969 247 GATTLNI 253 (623)
Q Consensus 247 Ga~~I~l 253 (623)
+++.|.+
T Consensus 180 ~~~~i~~ 186 (377)
T PRK08599 180 DIPHYSA 186 (377)
T ss_pred CCCEEee
Confidence 9887644
No 459
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=72.16 E-value=1.1e+02 Score=30.67 Aligned_cols=146 Identities=17% Similarity=0.147 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhHcCCCEEEEe---cCC-CChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 101 KEKLDIARQLAKLGVDIIEAG---FPA-ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvG---fP~-~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+-+++++.+.+.|++.|=+- .-. ..+.+++.++.+++.... |.+.+=+-...+|++..++ .|
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~---------pv~~~ggi~~~~d~~~~~~----~G 96 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFM---------PLTVGGGIRSLEDAKKLLS----LG 96 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCC---------CEEEECCCCCHHHHHHHHH----cC
Confidence 377889999999999955442 211 223457788888876421 3333333334566665444 37
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--cC------------CC-CCCHHHHHHHHH
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--ED------------AG-RSDRKFLYEILG 241 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~--ed------------a~-r~d~e~l~~~~~ 241 (623)
++.|.+- +. .+ .+ .+.+.+.++. .|.+.+.++. -. .+ ........++++
T Consensus 97 ~~~vilg--~~-~l------~~----~~~~~~~~~~---~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (232)
T TIGR03572 97 ADKVSIN--TA-AL------EN----PDLIEEAARR---FGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAR 160 (232)
T ss_pred CCEEEEC--hh-Hh------cC----HHHHHHHHHH---cCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHH
Confidence 7776432 11 11 11 1233333322 2322122211 11 00 111223468888
Q ss_pred HHHHcCCcEEeecC--cccccCHHHHHHHHHHHHHhC
Q 006969 242 EVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 242 ~~~~aGa~~I~l~D--TvG~~~P~~v~~li~~l~~~~ 276 (623)
.+.++|++.|.+-| ..|.... .-.++++.+++..
T Consensus 161 ~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~ 196 (232)
T TIGR03572 161 EAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV 196 (232)
T ss_pred HHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC
Confidence 88999999999988 3333222 2356777777765
No 460
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=72.06 E-value=15 Score=41.40 Aligned_cols=72 Identities=24% Similarity=0.202 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 313 (623)
++..+-+++++++|++.|.+--+-| -. ..+.+.|+++++.+|+ ++|.+ -..+-...+..++++||+.|.++
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g-~~-~~~~~~i~~i~~~~~~---~~vi~----G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHG-HS-IYVIDSIKEIKKTYPD---LDIIA----GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCC-cH-hHHHHHHHHHHHhCCC---CCEEE----EeCCCHHHHHHHHHhCCCEEEEC
Confidence 3455667788999999988844444 22 4588899999999875 55665 23444567789999999999986
Q ss_pred c
Q 006969 314 I 314 (623)
Q Consensus 314 v 314 (623)
+
T Consensus 294 ~ 294 (450)
T TIGR01302 294 I 294 (450)
T ss_pred C
Confidence 5
No 461
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=72.05 E-value=47 Score=37.38 Aligned_cols=138 Identities=19% Similarity=0.195 Sum_probs=77.6
Q ss_pred CCCCCH-HHHHHHHHHHhHcCCCEEEEecC-CCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHH
Q 006969 95 GATLTS-KEKLDIARQLAKLGVDIIEAGFP-AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (623)
Q Consensus 95 g~~~t~-e~Kl~Ia~~L~~~Gvd~IEvGfP-~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 172 (623)
+..++. ++-++-++.|.+.|+|.|++-.. +.++.-.+.++.|.+..++ .+.+++-. +..++.+.+.++
T Consensus 216 ~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~--------~~vi~G~v-~t~~~a~~l~~a- 285 (450)
T TIGR01302 216 GAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPD--------LDIIAGNV-ATAEQAKALIDA- 285 (450)
T ss_pred EEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCC--------CCEEEEeC-CCHHHHHHHHHh-
Confidence 333443 45567778999999999999542 2334445778888765321 24444432 356666666654
Q ss_pred hcCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE
Q 006969 173 KYAKRPRIHTFI-ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (623)
Q Consensus 173 ~~a~~~~v~i~~-~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I 251 (623)
|++.|.+-+ +.|-..-+...++...+ +..+.++.+++++.|.. |. + |++-.++..+. .+.++||+.+
T Consensus 286 ---Gad~i~vg~g~G~~~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vp-vi--a-dGGi~~~~di~----kAla~GA~~V 353 (450)
T TIGR01302 286 ---GADGLRVGIGPGSICTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIP-VI--A-DGGIRYSGDIV----KALAAGADAV 353 (450)
T ss_pred ---CCCEEEECCCCCcCCccceecCCCccH-HHHHHHHHHHHhhcCCe-EE--E-eCCCCCHHHHH----HHHHcCCCEE
Confidence 888886642 21110001112232222 45566777778877764 32 3 45555555443 2446899998
Q ss_pred eec
Q 006969 252 NIP 254 (623)
Q Consensus 252 ~l~ 254 (623)
.+.
T Consensus 354 ~~G 356 (450)
T TIGR01302 354 MLG 356 (450)
T ss_pred EEC
Confidence 864
No 462
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=71.88 E-value=70 Score=34.87 Aligned_cols=55 Identities=16% Similarity=0.329 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc-CCc-EEeecCcccccCHH
Q 006969 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GAT-TLNIPDTVGITMPT 263 (623)
Q Consensus 208 ~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a-Ga~-~I~l~DTvG~~~P~ 263 (623)
+.++.+.+.|.+.+.++- ..+...|+.+.++++.+.+. +.. .+-.=|+.|.++..
T Consensus 146 ~~~~~~~~~Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~AN 202 (365)
T TIGR02660 146 ELAEVAAEAGADRFRFAD-TVGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATAN 202 (365)
T ss_pred HHHHHHHHcCcCEEEEcc-cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHH
Confidence 344444455655333322 24455666666666655443 211 22333666665544
No 463
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=71.87 E-value=27 Score=35.25 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCC--CCcceeEEEeec---C---CcchHHHH-HH
Q 006969 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP--GIENVVISTHCQ---N---DLGLSTAN-TI 300 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~--~~~~v~i~~H~H---N---D~GlAvAN-sl 300 (623)
+.+.+.....++.+.++||+.+.+-...|.....++.+.++.+++... +. .+.+..|.+ - ....-+.- +.
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~-~~iie~~~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGL-PLIAWMYPRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC-CEEEEEeccCCcccCccCHHHHHHHHH
Confidence 344455556688899999999988888887766666767766665321 22 244555441 0 00012332 55
Q ss_pred HHHHhCCCEEEec
Q 006969 301 AGACAGARQVEVT 313 (623)
Q Consensus 301 aAv~aGA~~Vd~T 313 (623)
.|.++|||+|=+.
T Consensus 151 ~a~~~GaD~Ik~~ 163 (235)
T cd00958 151 IGAELGADIVKTK 163 (235)
T ss_pred HHHHHCCCEEEec
Confidence 6888999999774
No 464
>PRK05985 cytosine deaminase; Provisional
Probab=71.79 E-value=1.6e+02 Score=32.12 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCc---EEeecCcccccCHHHHHHHHHHHHHhCCCCc
Q 006969 204 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT---TLNIPDTVGITMPTEFGKLIADIKANTPGIE 280 (623)
Q Consensus 204 ~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~---~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~ 280 (623)
+.+.++++.|+++|.. +.+..-.........+.++++.+.+.|.. .+.-+...+...|.++.++++.+++. +
T Consensus 191 ~~l~~~~~~A~~~g~~-i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~--g-- 265 (391)
T PRK05985 191 GQLDIVFGLAERHGVG-IDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEA--G-- 265 (391)
T ss_pred HHHHHHHHHHHHhCCC-cEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHc--C--
Confidence 4455788999999975 54543112222334566677777777763 56667777888899998999998874 1
Q ss_pred ceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 006969 281 NVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (623)
Q Consensus 281 ~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv 314 (623)
+.+ .|+.+ .+.++++.-..+++|++..=+|=
T Consensus 266 -~~v-~~~~~-~~~~~~~~~~l~~~Gv~v~lGtD 296 (391)
T PRK05985 266 -VAI-MTNAP-GSVPVPPVAALRAAGVTVFGGND 296 (391)
T ss_pred -CeE-EEeCC-CCCCCCCHHHHHHCCCeEEEecC
Confidence 333 35543 47788899999999997754443
No 465
>PF08502 LeuA_dimer: LeuA allosteric (dimerisation) domain; InterPro: IPR013709 This is the C-terminal regulatory (R) domain of alpha-isopropylmalate synthase, which catalyses the first committed step in the leucine biosynthetic pathway []. This domain, is an internally duplicated structure with a novel fold []. It comprises two similar units that are arranged such that the two -helices pack together in the centre, crossing at an angle of 34 degrees, sandwiched between the two three-stranded, antiparallel beta-sheets. The overall domain is thus constructed as a beta-alpha-beta three-layer sandwich []. ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process; PDB: 3HQ1_A 3HPZ_B 1SR9_A 3FIG_B 3HPS_A 3F6G_A 3F6H_A.
Probab=71.62 E-value=27 Score=32.31 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=38.4
Q ss_pred eeEEeeEEEEecc---CCeeEEEEEEEccCCeEEEEEEEecCHHHHHHHHHHHhh
Q 006969 479 VWKLLDMQVTCGT---LGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIV 530 (623)
Q Consensus 479 ~~~L~~~~v~~g~---~~~~~AtV~l~~~~G~~~~~~a~G~GPVdA~~~AL~~~~ 530 (623)
.++|.+|++..-+ .....+.|++...+|+.....+...-.+.|..+|+-.++
T Consensus 75 ~i~l~dy~~~al~~gsda~a~a~V~i~~~~g~~~~G~g~~~Di~~As~~A~~~Ai 129 (133)
T PF08502_consen 75 DIELIDYSEHALGSGSDAQAEAYVEIEDEDGRTVWGVGIDTDIVEASLKAYLSAI 129 (133)
T ss_dssp EEEEEEEEEEESTTSTT-EEEEEEEEEE-GGGEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEeccCCCCcEEEEEEEEEECCCcEEEEEEECCCHHHHHHHHHHHHH
Confidence 6899999998843 335678888875688888888888777777777765544
No 466
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=71.60 E-value=1.1e+02 Score=34.65 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccCCCCCCHHHHHHHHHHHHHc----C-CcEEeecCcccccCHHHHHHHH
Q 006969 196 RKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKV----G-ATTLNIPDTVGITMPTEFGKLI 269 (623)
Q Consensus 196 ~~t~ee~l~~~~~~v~~ak~~G~~~V~f-~~eda~r~d~e~l~~~~~~~~~a----G-a~~I~l~DTvG~~~P~~v~~li 269 (623)
.++.||+++. ++.+++.|.+.+.+ +.++-...+.+|+.++++.+.+. | ..+|++. +|.++.+++..|.
T Consensus 114 ~Ls~EEI~~e----a~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~in--ig~lt~eey~~Lk 187 (469)
T PRK09613 114 KLTQEEIREE----VKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVN--IAPTTVENYKKLK 187 (469)
T ss_pred ECCHHHHHHH----HHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEE--eecCCHHHHHHHH
Confidence 4577776664 45567788875544 55554567899999999999874 3 3456663 7888888887775
Q ss_pred HHHHHh------CCCCcceeEEEee---cCCcchHHHHHHHHHHhCCC-EEEeccCCccC
Q 006969 270 ADIKAN------TPGIENVVISTHC---QNDLGLSTANTIAGACAGAR-QVEVTINGIGE 319 (623)
Q Consensus 270 ~~l~~~------~~~~~~v~i~~H~---HND~GlAvANslaAv~aGA~-~Vd~Tv~GlGE 319 (623)
..=... +-+. ..-=.+|. .-|+--=+..--.|.++|.+ .=-+.+.|||+
T Consensus 188 eaGv~~~~l~qETY~~-ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge 246 (469)
T PRK09613 188 EAGIGTYQLFQETYHK-PTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYD 246 (469)
T ss_pred HcCCCEEEeccccCCH-HHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCC
Confidence 441000 0000 00012333 23455566667788899997 44678999998
No 467
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=71.46 E-value=15 Score=39.74 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCccccc-CHHHHHHHHHHHHHhCCCCcceeEEEeec---------CCcchHHH
Q 006969 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGIT-MPTEFGKLIADIKANTPGIENVVISTHCQ---------NDLGLSTA 297 (623)
Q Consensus 228 a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~-~P~~v~~li~~l~~~~~~~~~v~i~~H~H---------ND~GlAvA 297 (623)
.++.++|.+.+.++.+.+.|++++.|.+....- ..+.+.++++.+++.+|+ +.+|+- +-.|+-..
T Consensus 76 ~y~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~-----i~i~~~~~~ei~~~~~~~g~~~~ 150 (351)
T TIGR03700 76 AYAMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD-----LHVKAFTAVEIHHFSKISGLPTE 150 (351)
T ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC-----ceEEeCCHHHHHHHHHHcCCCHH
Confidence 345688999999998888999999987432222 235788899999998874 334431 33577666
Q ss_pred HHHHHH-HhCCCEEE
Q 006969 298 NTIAGA-CAGARQVE 311 (623)
Q Consensus 298 NslaAv-~aGA~~Vd 311 (623)
..+..+ +||++.+.
T Consensus 151 e~l~~LkeAGld~~~ 165 (351)
T TIGR03700 151 EVLDELKEAGLDSMP 165 (351)
T ss_pred HHHHHHHHcCCCcCC
Confidence 766544 47988775
No 468
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=71.46 E-value=1.1e+02 Score=30.45 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHH
Q 006969 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVI 244 (623)
Q Consensus 165 I~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~ 244 (623)
.+.-++.++.+|.+.|++....+ .+.++.+++.++. +.+.. .+. +.++.+.
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~-~i~~v-----~~~----~~~~~~~ 119 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIK-VIPTV-----TSV----EEARKAE 119 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCE-EEEeC-----CCH----HHHHHHH
Confidence 33334444556999988743211 1234555666664 44432 122 3345566
Q ss_pred HcCCcEEeec--CcccccCHH--HHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHHHHHHHhCCCEEEec
Q 006969 245 KVGATTLNIP--DTVGITMPT--EFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANTIAGACAGARQVEVT 313 (623)
Q Consensus 245 ~aGa~~I~l~--DTvG~~~P~--~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANslaAv~aGA~~Vd~T 313 (623)
+.|++.|.+- .+.|...+. ...++++.+++.++ +|+-.. .|... .|...++.+||+.|...
T Consensus 120 ~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~----~Pvi~~----GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 120 AAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD----IPVIAA----GGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred HcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC----CCEEEE----CCCCCHHHHHHHHHcCCcEEEEc
Confidence 7899988763 233444332 34567777777652 345543 46655 78888899999998764
No 469
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=71.33 E-value=1e+02 Score=34.59 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEe------cCCC-ChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhH-H
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAG------FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-K 166 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvG------fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~ 166 (623)
.+.+.++.++=++.|.+.|++.|.+- |... ...++ +.++.|.+..+ . ..+- |.-..+.++ +
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~-------~--~rir-~~~~~p~~l~~ 245 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAP-------E--MRIR-FTTSHPKDISE 245 (445)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCC-------C--cEEE-EccCChhhcCH
Confidence 56789999999999999999988773 1100 00111 33344332111 1 1221 211233333 2
Q ss_pred HHHHHHhcC--CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCC---eEEEcccCCCCCCHHHHHHH
Q 006969 167 TAWEAVKYA--KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCD---DVEFSPEDAGRSDRKFLYEI 239 (623)
Q Consensus 167 ~a~eal~~a--~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~--G~~---~V~f~~eda~r~d~e~l~~~ 239 (623)
.-++.++.+ +.+.+|+-+-+.+-.+.+.+++.. ..+...++++.+++. |+. ++.++.-. -+.+.+.+.
T Consensus 246 ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~--t~~~~~~~v~~lr~~~pgi~i~td~IvGfPg---ET~edf~~t 320 (445)
T PRK14340 246 SLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGH--TIEEYLEKIALIRSAIPGVTLSTDLIAGFCG---ETEEDHRAT 320 (445)
T ss_pred HHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCC--CHHHHHHHHHHHHHhCCCCEEeccEEEECCC---CCHHHHHHH
Confidence 334555544 678898866554445555666532 245666788888887 763 12233211 234555566
Q ss_pred HHHHHHcCCcEEe
Q 006969 240 LGEVIKVGATTLN 252 (623)
Q Consensus 240 ~~~~~~aGa~~I~ 252 (623)
++.+.+.+.+.+.
T Consensus 321 l~~~~~~~~~~~~ 333 (445)
T PRK14340 321 LSLMEEVRFDSAF 333 (445)
T ss_pred HHHHHhcCCCEEe
Confidence 7777777765544
No 470
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=71.31 E-value=39 Score=35.81 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEe-ec-CcccccCHHHHHHHHHHHHHhCCCCccee
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN-IP-DTVGITMPTEFGKLIADIKANTPGIENVV 283 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~-l~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~ 283 (623)
..++.+.|++.|+-.-.|+. .+.+.+..+++++.+.+...|. +. .+.-++-.+.+..++..+.++.+ +|
T Consensus 6 ~k~iL~~A~~~~yAV~AfN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~----VP 76 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNI-----HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN----MP 76 (286)
T ss_pred HHHHHHHHHHCCceEEEEEe-----CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC----CC
Confidence 45778889999876345665 5689999999999999876544 32 23333455667888888888763 67
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCE--EEeccCCc
Q 006969 284 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 317 (623)
Q Consensus 284 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Tv~Gl 317 (623)
+.+| =|-|........|+++|.+- +|+|-..+
T Consensus 77 ValH--LDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 110 (286)
T PRK12738 77 LALH--LDHHESLDDIRRKVHAGVRSAMIDGSHFPF 110 (286)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCeEeecCCCCCH
Confidence 8755 56777788999999999986 58876654
No 471
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=71.23 E-value=46 Score=34.84 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=53.5
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHcCCCeEEEcccCC-CCCCHHHHHHHHHHHH-
Q 006969 173 KYAKRPRIHTFIATSGIHMEHKLR------KTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVI- 244 (623)
Q Consensus 173 ~~a~~~~v~i~~~~Sd~h~~~~l~------~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda-~r~d~e~l~~~~~~~~- 244 (623)
..+|++.|.+ .+.-....+| .|.+|++..+...++-+ ....|..+.+.+ +..+++...+-+.++.
T Consensus 32 e~aG~d~i~v----Gds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~---~~p~vvaD~pfg~y~~~~~~av~~a~r~~~ 104 (264)
T PRK00311 32 DEAGVDVILV----GDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA---PRALVVADMPFGSYQASPEQALRNAGRLMK 104 (264)
T ss_pred HHcCCCEEEE----CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCcEEEeCCCCCccCCHHHHHHHHHHHHH
Confidence 3468888742 2222223344 56777766655544432 222244555433 4477777555554444
Q ss_pred HcCCcEEeecCcccccCHHHHHHHHHHHHHh
Q 006969 245 KVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 245 ~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
++||+.|.|-|. .++.+.|+.+++.
T Consensus 105 ~aGa~aVkiEdg------~~~~~~I~al~~a 129 (264)
T PRK00311 105 EAGAHAVKLEGG------EEVAETIKRLVER 129 (264)
T ss_pred HhCCeEEEEcCc------HHHHHHHHHHHHC
Confidence 499999999996 4677788888754
No 472
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=71.20 E-value=15 Score=39.24 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCcEEeecCccc---ccCHHHHHHHH----HHHHHhCCCCcceeEEEeecCCcchHHHHHHHH-HHh
Q 006969 234 KFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLI----ADIKANTPGIENVVISTHCQNDLGLSTANTIAG-ACA 305 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~DTvG---~~~P~~v~~li----~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA-v~a 305 (623)
+.+.+.++++.++|++.|.++|..+ .+.|+++.+++ +.+.+.+... .....+|++-+.. +-+.- .+.
T Consensus 180 ~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~-g~~~ilH~CG~~~----~~~~~l~~~ 254 (340)
T TIGR01463 180 DFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI-GGITVLHICGFTQ----PILRDIANN 254 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhc-CCceEEEECCCch----hhHHHHHHh
Confidence 3455666777889999999999876 67898888765 2333332111 1345789886642 22333 355
Q ss_pred CCCEEE
Q 006969 306 GARQVE 311 (623)
Q Consensus 306 GA~~Vd 311 (623)
|++.++
T Consensus 255 g~d~ls 260 (340)
T TIGR01463 255 GCFGFS 260 (340)
T ss_pred CCCEEe
Confidence 888754
No 473
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=70.91 E-value=49 Score=34.92 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCc-EEeecCcc-cccCHHHHHHHHHHHHHhCCCCccee
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT-TLNIPDTV-GITMPTEFGKLIADIKANTPGIENVV 283 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~-~I~l~DTv-G~~~P~~v~~li~~l~~~~~~~~~v~ 283 (623)
+.++++.|++.|+-.-.|+. .+.+.+..+++++.+.+.. +|.+.... .+...+.+..++..+.++. ++|
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~-----~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~----~vp 76 (281)
T PRK06806 6 MKELLKKANQENYGVGAFSV-----ANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQA----KVP 76 (281)
T ss_pred HHHHHHHHHHCCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHC----CCC
Confidence 45778889999886335665 5789999999999999865 45554433 2333344666777776665 367
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCEEE
Q 006969 284 ISTHCQNDLGLSTANTIAGACAGARQVE 311 (623)
Q Consensus 284 i~~H~HND~GlAvANslaAv~aGA~~Vd 311 (623)
+.+|. |-|.-......|+++|++.|.
T Consensus 77 v~lHl--DH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 77 VAVHF--DHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEE
Confidence 87665 556667888899999999874
No 474
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=70.88 E-value=1.5e+02 Score=33.80 Aligned_cols=160 Identities=25% Similarity=0.366 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+|..+|..|.-.+.. |||+|.+.|+. +++|.+.+|++....+.. + ++.|+=.. +++.|+. ++.+..+.
T Consensus 172 alteKD~~dl~f~~~~-gvD~vA~SFVr-~~~Dv~~~R~~l~~~~~~---~---~~iiaKIE--~~eav~N-ldeIi~~S 240 (477)
T COG0469 172 ALTEKDKEDLKFGLEQ-GVDFVALSFVR-NAEDVEEVREILAETGGR---D---VKIIAKIE--NQEAVDN-LDEIIEAS 240 (477)
T ss_pred CCCccCHHHHHHHHhc-CCCEEEEecCC-CHHHHHHHHHHHHHhCCC---C---ceEEEeec--CHHHHhH-HHHHHHhc
Confidence 5778888888877766 99999999996 577888888554432221 0 12222222 3344443 23222211
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
+.| .++--|+=+ ....+++.-.=+.+++.|+..|.. |.. |...--+-....+.+++.++.+ |+|.
T Consensus 241 -DGI--MVARGDLGV----Eip~e~Vp~~QK~iI~~~~~~gkp-VItATQMLeSMi~np~PTRAEvsDVanAvlD-GtDA 311 (477)
T COG0469 241 -DGI--MVARGDLGV----EIPLEEVPIIQKRIIRKARRAGKP-VITATQMLESMIENPRPTRAEVSDVANAVLD-GTDA 311 (477)
T ss_pred -Cce--EEEeccccc----ccCHHHhhHHHHHHHHHHHHcCCc-eEEeeccHHHHhhCCCCCchhhhHHHHHHHh-CCce
Confidence 332 233333211 245667777777899999999975 433 1111222333445567777765 9999
Q ss_pred Eeec-CcccccCHHHHHHHHHHHHHhC
Q 006969 251 LNIP-DTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 251 I~l~-DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+.|. -|.=...|-+.-+..+.+....
T Consensus 312 vMLS~ETA~G~yPveaV~~M~~I~~~a 338 (477)
T COG0469 312 VMLSGETAAGKYPVEAVATMARIAKEA 338 (477)
T ss_pred eeechhhhcCCCHHHHHHHHHHHHHHH
Confidence 9886 5777789987777777766554
No 475
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=70.57 E-value=23 Score=38.01 Aligned_cols=70 Identities=23% Similarity=0.196 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 006969 236 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (623)
Q Consensus 236 l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Tv 314 (623)
..+.+++++++|++.|.+-=+.| .|..+.++|+.+++..|. ++|.+ .|- .-...+..++++||+.|-+.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~---v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPN---VDVIA--GNV--VTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCC---ceEEE--CCC--CCHHHHHHHHhcCCCEEEECC
Confidence 35678888999999887633344 346788899999998863 55665 222 445667888999999998743
No 476
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=70.33 E-value=43 Score=36.67 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHH-HHHHHhccccccCCCccceEEeecccchhhHHHHHHH-Hh
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVR-TIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA-VK 173 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~-~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea-l~ 173 (623)
-.++.+...++++.-.+.||.+||.+||..+-.--+++. .|++.....+ -+..++..|---..+|+++-++. |.
T Consensus 29 ~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv----~LaTKlp~~~~~~~edm~r~fneqLe 104 (391)
T COG1453 29 GSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKV----KLATKLPSWPVKDREDMERIFNEQLE 104 (391)
T ss_pred CCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceE----EEEeecCCccccCHHHHHHHHHHHHH
Confidence 446778888999999999999999999863222223443 3443221111 12234444444457788877643 55
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHH-----HHHHHHHHHHcCCC-eEEEcc
Q 006969 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEI-----ARSMVKFARSLGCD-DVEFSP 225 (623)
Q Consensus 174 ~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~-----~~~~v~~ak~~G~~-~V~f~~ 225 (623)
..+.+.+.++. .+.++. +.++. +.+.++.+|+.|.- .+-||.
T Consensus 105 kl~~Dy~D~yl-------iH~l~~---e~~~k~~~~g~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 105 KLGTDYIDYYL-------IHGLNT---ETWEKIERLGVFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred HhCCchhhhhh-------hccccH---HHHHHHHccChHHHHHHHHhcCcEEEeeecC
Confidence 56887776543 233433 23333 36778889999842 344554
No 477
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=70.15 E-value=27 Score=37.50 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCc-EEeecCcccccCHHHHHHH--HHHHHHhCCCCcceeE
Q 006969 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT-TLNIPDTVGITMPTEFGKL--IADIKANTPGIENVVI 284 (623)
Q Consensus 208 ~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~-~I~l~DTvG~~~P~~v~~l--i~~l~~~~~~~~~v~i 284 (623)
..++|+.+.|.. +.+|. +-++.+.+.+.++.+.+.|.. .+-|-=|..|-+|.+-..| +..+++.+ +++|
T Consensus 138 plik~iA~~~kP-iIlST---Gma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F----n~~v 209 (347)
T COG2089 138 PLIKYIAKKGKP-IILST---GMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF----NAIV 209 (347)
T ss_pred HHHHHHHhcCCC-EEEEc---ccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh----CCcc
Confidence 678888888875 77754 356667777777777888865 7777778999999887665 66778887 3567
Q ss_pred EEeecCCcchHHHHHHHHHHhCCCEEE--eccCCccCccCcccHHHHHHHHHhccccccccccc--CCChh---HHHHHH
Q 006969 285 STHCQNDLGLSTANTIAGACAGARQVE--VTINGIGERAGNASLEEVVMAFKCRGEHILGGLYT--GINTR---HIVMAS 357 (623)
Q Consensus 285 ~~H~HND~GlAvANslaAv~aGA~~Vd--~Tv~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t--~idl~---~L~~~s 357 (623)
|+-=|- +| .+..++|+..||..|+ -|+.= .. .|-+. .+|++ .+.+..
T Consensus 210 GlSDHT-~g--~~a~l~AvALGA~viEKHFtldk-----------------~~------~GpD~~fSldP~efk~mv~~i 263 (347)
T COG2089 210 GLSDHT-LG--ILAPLAAVALGASVIEKHFTLDK-----------------SR------EGPDHAFSLDPDEFKEMVDAI 263 (347)
T ss_pred ccccCc-cc--hhHHHHHHHhcccceeeeeeecC-----------------CC------CCCCcceecCHHHHHHHHHHH
Confidence 776664 44 8889999999999984 23221 00 12221 33443 445555
Q ss_pred HHHHHHhCCCCCCCCcccCcchhhcccccccccccc
Q 006969 358 KMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLK 393 (623)
Q Consensus 358 ~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dgi~k 393 (623)
+.++..+|-....-.|.-..+.--+.-++|+..-.|
T Consensus 264 r~~~~alG~~~k~~~~~E~~~~~~~~Rsl~~~kdik 299 (347)
T COG2089 264 RQVEKALGDGEKEILPSEEETRNFARRSLVATKDIK 299 (347)
T ss_pred HHHHHHhCCCccccChhHHHHHHHHhhheeeecccc
Confidence 667777887666666666666444455677754333
No 478
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=70.11 E-value=42 Score=35.51 Aligned_cols=102 Identities=9% Similarity=0.076 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcE-Eeec-CcccccCHHHHHHHHHHHHHhCCCCccee
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIP-DTVGITMPTEFGKLIADIKANTPGIENVV 283 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~-I~l~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~ 283 (623)
..++.+.|++.++-.-.|+. .+.+.+..+++++.+.+... |.+. .+..++-.+.+..++..+.++. ++|
T Consensus 6 ~k~il~~A~~~~yaV~AfN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~----~VP 76 (284)
T PRK09195 6 TKQMLNNAQRGGYAVPAFNI-----HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY----HHP 76 (284)
T ss_pred HHHHHHHHHHcCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC----CCC
Confidence 45677889998875335655 57799999999999998654 4443 3344555567788888888776 367
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCE--EEeccCCcc
Q 006969 284 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGIG 318 (623)
Q Consensus 284 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Tv~GlG 318 (623)
+.+|. |-|.-......|+++|.+- +|+|-..+-
T Consensus 77 V~lHL--DHg~~~e~i~~Ai~~GftSVM~DgS~l~~e 111 (284)
T PRK09195 77 LALHL--DHHEKFDDIAQKVRSGVRSVMIDGSHLPFA 111 (284)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEEeCCCCCCHH
Confidence 77654 6666789999999999986 588866543
No 479
>PRK09206 pyruvate kinase; Provisional
Probab=70.06 E-value=2e+02 Score=32.70 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+|..||..| +...+.|||+|=+.|-. +++|.+.++.+.+..+.. .....+.| . +++.++.. +.+...
T Consensus 169 ~ltekD~~di-~f~~~~~vD~ia~SFVr-~~~Dv~~~r~~l~~~~~~---~~~iiaKI---E--t~eav~nl-deIl~~- 236 (470)
T PRK09206 169 ALAEKDKQDL-IFGCEQGVDFVAASFIR-KRSDVLEIREHLKAHGGE---NIQIISKI---E--NQEGLNNF-DEILEA- 236 (470)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEEcCCC-CHHHHHHHHHHHHHcCCC---CceEEEEE---C--CHHHHHhH-HHHHHh-
Confidence 3778888776 66679999999998864 577777777665542210 00112222 1 33344322 222221
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
.+. ++++-.|+=++ +..+++.....++++.|+++|+. |.. |.....+-+...+.+++.++.+ |+|.
T Consensus 237 ~Dg--ImVaRGDLgve----lg~e~vp~~qk~ii~~~~~~gkp-vI~ATqmLeSM~~np~PTRAEvsDVanav~d-G~Da 308 (470)
T PRK09206 237 SDG--IMVARGDLGVE----IPVEEVIFAQKMMIEKCNRARKV-VITATQMLDSMIKNPRPTRAEAGDVANAILD-GTDA 308 (470)
T ss_pred CCE--EEECcchhhhh----cCHHHHHHHHHHHHHHHHHcCCC-EEEEchhHHHHhhCCCCCchhhHHHHHHhhh-CCcE
Confidence 444 56666665443 33677788888999999999986 433 2223334445556677776654 9999
Q ss_pred Eeec-CcccccCHHHHHHHHHHHHHhC
Q 006969 251 LNIP-DTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 251 I~l~-DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+-|. -|.=...|.+.-+.+..+.+..
T Consensus 309 vMLS~ETA~G~yPveaV~~m~~I~~~~ 335 (470)
T PRK09206 309 VMLSGESAKGKYPLEAVSIMATICERT 335 (470)
T ss_pred EEEechhcCCCCHHHHHHHHHHHHHHH
Confidence 9995 5666778988888777776543
No 480
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=69.95 E-value=1.8e+02 Score=33.99 Aligned_cols=128 Identities=14% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcc-----ccccCCCccceEE-------eecccch--
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGN-----AVDAESGYVPVIC-------GLSRCNE-- 162 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~-----~~~~~~~l~~~i~-------~~~r~~~-- 162 (623)
...++.-++=+..|.++|.+++=+..|. .++.+.++.|.+.+.. .+..|.-+.+.++ .-.|-|+
T Consensus 37 T~D~~atv~Qi~~l~~aGceiVRvtv~~--~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN 114 (611)
T PRK02048 37 TMDTEACVAQAKRIIDAGGEYVRLTTQG--VREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQYAEKVRINPGN 114 (611)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHhhCCEEECCCc
Confidence 3456666777888999999999998873 5677888888776311 1111101111100 0001111
Q ss_pred --------------------------hhHHHHHHHHhcCCCC-EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 006969 163 --------------------------RDIKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS 215 (623)
Q Consensus 163 --------------------------~dI~~a~eal~~a~~~-~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~ 215 (623)
+-+..-++.-++.+++ ||.+--.+-+-.+..++|-|++..++-+.+.++.+.+
T Consensus 115 ~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~ 194 (611)
T PRK02048 115 YVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGDTPEGMVESCMEFLRICVE 194 (611)
T ss_pred CCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 1111223334455665 5666433334466667888999999999999999999
Q ss_pred cCCCeEEEccc
Q 006969 216 LGCDDVEFSPE 226 (623)
Q Consensus 216 ~G~~~V~f~~e 226 (623)
+|+..+.||.-
T Consensus 195 ~~f~diviS~K 205 (611)
T PRK02048 195 EHFTDVVISIK 205 (611)
T ss_pred CCCCcEEEEEE
Confidence 99888888773
No 481
>PRK13753 dihydropteroate synthase; Provisional
Probab=69.82 E-value=28 Score=36.78 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=52.9
Q ss_pred EEEccc---CCCCC-CHHHHHHHHHHHHHcCCcEEeecCcccc--cCH----HHHH---HHHHHHHHhCCCCcceeEEEe
Q 006969 221 VEFSPE---DAGRS-DRKFLYEILGEVIKVGATTLNIPDTVGI--TMP----TEFG---KLIADIKANTPGIENVVISTH 287 (623)
Q Consensus 221 V~f~~e---da~r~-d~e~l~~~~~~~~~aGa~~I~l~DTvG~--~~P----~~v~---~li~~l~~~~~~~~~v~i~~H 287 (623)
+.++|. |+++. +++.+.+-++.+.+.||++|-|.=-... ..| +|+. ..|+.+++. .++|++
T Consensus 8 lNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-----~~~ISI- 81 (279)
T PRK13753 8 LNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-----MHRVSI- 81 (279)
T ss_pred EeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-----CCcEEE-
Confidence 345444 67764 8899999999999999999887522111 111 3666 455555543 246777
Q ss_pred ecCCcchHHHHHHHHHHhCCCEEEe
Q 006969 288 CQNDLGLSTANTIAGACAGARQVEV 312 (623)
Q Consensus 288 ~HND~GlAvANslaAv~aGA~~Vd~ 312 (623)
+++--.+| .+|+++||+.|+-
T Consensus 82 --DT~~~~va--~~al~aGadiIND 102 (279)
T PRK13753 82 --DSFQPETQ--RYALKRGVGYLND 102 (279)
T ss_pred --ECCCHHHH--HHHHHcCCCEEEe
Confidence 44444443 5789999998754
No 482
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=69.78 E-value=71 Score=38.41 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=60.3
Q ss_pred HHHhcCCCCEEEEEecC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEcccCC--CCCCH
Q 006969 170 EAVKYAKRPRIHTFIAT--------SGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDA--GRSDR 233 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~--------Sd~--h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~---~V~f~~eda--~r~d~ 233 (623)
+..+.+|.+.|.|-.+- |+. ++...+|=|.|.-++.+.+.++.+|+. |-+ .|.+++.|. .-.++
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~ 637 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP 637 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH
Confidence 33466899999887652 443 445567778888888888888888875 321 245576532 23467
Q ss_pred HHHHHHHHHHHHcCCcEEeec
Q 006969 234 KFLYEILGEVIKVGATTLNIP 254 (623)
Q Consensus 234 e~l~~~~~~~~~aGa~~I~l~ 254 (623)
+...++++.+.++|+|.|.+.
T Consensus 638 ~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 638 DDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred HHHHHHHHHHHhcCCcEEEeC
Confidence 888899999999999999884
No 483
>PRK01060 endonuclease IV; Provisional
Probab=69.56 E-value=39 Score=34.81 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe--E-EEcccC---CCC-----
Q 006969 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD--V-EFSPED---AGR----- 230 (623)
Q Consensus 162 ~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~--V-~f~~ed---a~r----- 230 (623)
..|++.+++.+++.|.+.|.++...+.... .-..+.++ ++ +.-+.+++.|++. + .-.|.. ++.
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~--~~~~~~~~-~~---~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r 84 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNPQQWK--RKPLEELN-IE---AFKAACEKYGISPEDILVHAPYLINLGNPNKEIL 84 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCCCCCc--CCCCCHHH-HH---HHHHHHHHcCCCCCceEEecceEecCCCCCHHHH
Confidence 456888888888899999999875432111 11233333 33 3445566788751 1 112211 111
Q ss_pred -CCHHHHHHHHHHHHHcCCcEEeecCccccc---CHH--HHHHHHHHHHHhCCCCcceeEEEeecCCc
Q 006969 231 -SDRKFLYEILGEVIKVGATTLNIPDTVGIT---MPT--EFGKLIADIKANTPGIENVVISTHCQNDL 292 (623)
Q Consensus 231 -~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~---~P~--~v~~li~~l~~~~~~~~~v~i~~H~HND~ 292 (623)
...+++.+.++.+.+.|+..|.+- .|.. .|. .+..+++.+++......++.|.+..|...
T Consensus 85 ~~s~~~~~~~i~~A~~lga~~vv~h--~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~ 150 (281)
T PRK01060 85 EKSRDFLIQEIERCAALGAKLLVFH--PGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQ 150 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEc--CCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 124578888888999999988773 3322 122 33444444443322112466777776543
No 484
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=69.50 E-value=1.4e+02 Score=31.62 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCC------ChhHH-HHHHHHHHHhccccccCCCccceEEeecccchhhHHH
Q 006969 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAA------SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (623)
Q Consensus 95 g~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~------s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (623)
...+..+|=.++|+...++|.+++=+.+-.- +..-| +-++.|.+..+.. .|-.|.. ...+.+.
T Consensus 94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t---------~iEvL~P-DF~G~~~ 163 (306)
T COG0320 94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQT---------TIEVLTP-DFRGNDD 163 (306)
T ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCc---------eEEEeCc-cccCCHH
Confidence 5678899999999999999999999976211 11112 5566666643222 2222221 2334566
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE-EcccCCCCCCHHHHHHHHHHHHHc
Q 006969 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE-FSPEDAGRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 168 a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~-f~~eda~r~d~e~l~~~~~~~~~a 246 (623)
+++.+..++.+++.=-+-+-+ .+....+ +-..-+...+..+++|+.+...+. =+.+-+---..+.+.++++-+.++
T Consensus 164 al~~v~~~~pdV~nHNvETVp-rL~~~VR--p~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~ 240 (306)
T COG0320 164 ALEIVADAGPDVFNHNVETVP-RLYPRVR--PGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSA 240 (306)
T ss_pred HHHHHHhcCcchhhcccccch-hcccccC--CCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHc
Confidence 777777777665431111111 0001111 112234455677888888743110 022222234457888999999999
Q ss_pred CCcEEeec----------CcccccCHHHHHHHHHHHH
Q 006969 247 GATTLNIP----------DTVGITMPTEFGKLIADIK 273 (623)
Q Consensus 247 Ga~~I~l~----------DTvG~~~P~~v~~li~~l~ 273 (623)
|+|.+.|. .-.-+-+|+++..+=+.-.
T Consensus 241 gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~ 277 (306)
T COG0320 241 GVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAE 277 (306)
T ss_pred CCCEEEeccccCCccccCCceeccCHHHHHHHHHHHH
Confidence 99999875 3345668888877654443
No 485
>PTZ00066 pyruvate kinase; Provisional
Probab=69.46 E-value=2.2e+02 Score=32.82 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+|..||..|.+...+.|||+|=+.|- .+++|...+|.+.+..+.. ..+.++| . +++.++.--+-+..
T Consensus 206 ~ltekD~~dI~~f~~~~~vD~IalSFV-r~a~DI~~~r~~l~~~g~~----~~IiAKI---E--~~~av~NldeIl~~-- 273 (513)
T PTZ00066 206 VIGEKDKNDILNFAIPMGCDFIALSFV-QSADDVRLCRQLLGERGRH----IKIIPKI---E--NIEGLINFDEILAE-- 273 (513)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCC-CCHHHHHHHHHHHHhCCCC----ceEEEEE---C--CHHHHHHHHHHHHh--
Confidence 377899999888889999999999886 4677887788776643211 0122222 1 23333322122221
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------cccCCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f------~~eda~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
.+.| .++=-|+=+ -...|++-..=+..++.|+..|.. |.+ |.....+-+...+-+++.++.+ |+|.
T Consensus 274 sDGI--MVARGDLGv----Eip~e~vp~~QK~II~~c~~~gkP-VIvATQmLeSMi~np~PTRAEvsDVaNAV~D-G~Da 345 (513)
T PTZ00066 274 SDGI--MVARGDLGM----EIPPEKVFLAQKMMISKCNVAGKP-VITATQMLESMIKNPRPTRAESTDVANAVLD-GTDC 345 (513)
T ss_pred cCEE--EEEcccccc----ccChHHcchHHHHHHHHHHHhCCC-EEEechhHHHHhhCCCCchHHHHHHHHHHHh-CCcE
Confidence 2333 233333211 134556555567889999999986 544 2223334455667788877765 9999
Q ss_pred Eeec-CcccccCHHHHHHHHHHHHHhC
Q 006969 251 LNIP-DTVGITMPTEFGKLIADIKANT 276 (623)
Q Consensus 251 I~l~-DTvG~~~P~~v~~li~~l~~~~ 276 (623)
+-|. -|.=...|.+.-+.+..+.+..
T Consensus 346 vMLSgETA~G~yPveaV~~m~~I~~~a 372 (513)
T PTZ00066 346 VMLSGETANGKFPVEAVNIMAKICFEA 372 (513)
T ss_pred EEecchhcCCcCHHHHHHHHHHHHHHH
Confidence 9996 5666678988888777776543
No 486
>PRK02227 hypothetical protein; Provisional
Probab=69.46 E-value=1.4e+02 Score=30.76 Aligned_cols=194 Identities=19% Similarity=0.143 Sum_probs=103.1
Q ss_pred HHHHhHcCCCEEEEecCCCCh---hHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEE
Q 006969 107 ARQLAKLGVDIIEAGFPAASK---EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTF 183 (623)
Q Consensus 107 a~~L~~~Gvd~IEvGfP~~s~---~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~~~~v~i~ 183 (623)
+....+.|.|+|.+=-|.... -....+++|.+.++...+ ....|-.+ ...+..+-.+......+|++.|.+=
T Consensus 13 A~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~p----vSAtiGD~-p~~p~~~~~aa~~~a~~GvDyVKvG 87 (238)
T PRK02227 13 ALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKP----VSATIGDV-PYKPGTISLAALGAAATGADYVKVG 87 (238)
T ss_pred HHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCC----ceeeccCC-CCCchHHHHHHHHHHhhCCCEEEEc
Confidence 445567899999995553211 112467777776543210 11222222 2233345444444455788877663
Q ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--CeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCccc---
Q 006969 184 IATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC--DDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG--- 258 (623)
Q Consensus 184 ~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~--~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG--- 258 (623)
..- ..+.++.++.+...++..+.+.- ..|-...-|..|.+--.-.++.+.+.++|.+.+.| ||.+
T Consensus 88 l~~---------~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~Ml-DTa~Kdg 157 (238)
T PRK02227 88 LYG---------GKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAML-DTAIKDG 157 (238)
T ss_pred CCC---------CCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEE-ecccCCC
Confidence 321 12445667777666666665532 22322222555443222235666777889988776 8765
Q ss_pred -----ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH------HHhCCCE--EEeccCCccCccCccc
Q 006969 259 -----ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG------ACAGARQ--VEVTINGIGERAGNAS 325 (623)
Q Consensus 259 -----~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA------v~aGA~~--Vd~Tv~GlGERaGNa~ 325 (623)
.+.+.+..++++..+++= +-.|+|-||.- ...|.++ |=+.+.+-|.|+|..+
T Consensus 158 ~~Lfd~l~~~~L~~Fv~~ar~~G---------------l~~gLAGSL~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id 222 (238)
T PRK02227 158 KSLFDHMDEEELAEFVAEARSHG---------------LMSALAGSLKFEDIPALKRLGPDILGVRGAVCGGGDRTGRID 222 (238)
T ss_pred cchHhhCCHHHHHHHHHHHHHcc---------------cHhHhcccCchhhHHHHHhcCCCEEEechhccCCCCcccccC
Confidence 456777888888877641 22333332211 1224444 4566666666777777
Q ss_pred HHHHH
Q 006969 326 LEEVV 330 (623)
Q Consensus 326 lEevv 330 (623)
.+-|.
T Consensus 223 ~~~V~ 227 (238)
T PRK02227 223 PELVA 227 (238)
T ss_pred HHHHH
Confidence 65443
No 487
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=69.44 E-value=45 Score=35.25 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEE-eec-CcccccCHHHHHHHHHHHHHhCCCCccee
Q 006969 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIP-DTVGITMPTEFGKLIADIKANTPGIENVV 283 (623)
Q Consensus 206 ~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I-~l~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~ 283 (623)
+.++.+.|++.|+-.-.|+. .+.+.+..+++++.+.++..| .+. -+..++-...+..++..+.++.. +|
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~----VP 74 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNI-----HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN----MP 74 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC----CC
Confidence 45678889999886335665 477999999999999987644 333 33344555668888888887763 67
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCE--EEeccCCc
Q 006969 284 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 317 (623)
Q Consensus 284 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Tv~Gl 317 (623)
+.+|. |-|--......|+++|.+- +|+|-..+
T Consensus 75 ValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 108 (282)
T TIGR01858 75 LALHL--DHHESLDDIRQKVHAGVRSAMIDGSHFPF 108 (282)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCCCH
Confidence 87654 5566678889999999986 58775543
No 488
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=69.18 E-value=90 Score=33.89 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=69.2
Q ss_pred HHHHHHhHcCCCEEEEecCCCChhH-------------HHHHHHHHHHhccccccCCCc-cceEEeecccchhhHHHHHH
Q 006969 105 DIARQLAKLGVDIIEAGFPAASKED-------------FEAVRTIAKEVGNAVDAESGY-VPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGfP~~s~~d-------------~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~~~dI~~a~e 170 (623)
+.++.|.++|++.|.+|.-..+++. .++++.+.+. +- . .. .--|.|+-.-+.++++..++
T Consensus 100 e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~-g~--~---~v~~dli~GlPgqt~e~~~~~l~ 173 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL-GF--N---NINVDLMFGLPNQTLEDWKETLE 173 (374)
T ss_pred HHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CC--C---cEEEEeecCCCCCCHHHHHHHHH
Confidence 5678888899999999975544432 2333333332 10 0 01 12355665567788888888
Q ss_pred HHhcCCCCEEEEEe----cCCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHcCCCeE
Q 006969 171 AVKYAKRPRIHTFI----ATSGIHMEHKLR----KTKQQVVEIARSMVKFARSLGCDDV 221 (623)
Q Consensus 171 al~~a~~~~v~i~~----~~Sd~h~~~~l~----~t~ee~l~~~~~~v~~ak~~G~~~V 221 (623)
.+...+.+.|.+|. +-++.+...+-| .+.++..++...+.+++.++|+...
T Consensus 174 ~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~y 232 (374)
T PRK05799 174 KVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQY 232 (374)
T ss_pred HHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEE
Confidence 87778888887763 445554433222 2556667777778888888898643
No 489
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=69.12 E-value=56 Score=34.23 Aligned_cols=136 Identities=19% Similarity=0.178 Sum_probs=64.8
Q ss_pred HHHHHhHcCCCEEEEec---------CCC---Ch-hHH-HHHHHHHHHhccccccCCCccceEEeecccch-hhHHHHHH
Q 006969 106 IARQLAKLGVDIIEAGF---------PAA---SK-EDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-RDIKTAWE 170 (623)
Q Consensus 106 Ia~~L~~~Gvd~IEvGf---------P~~---s~-~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~-~dI~~a~e 170 (623)
.|+...+-|+|.|=+-. ++. -| .|. +.+..+++++.+.+. -.|+++|.+-..+ .+++.-++
T Consensus 27 sAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~----~tPViaGv~atDP~~~~~~fl~ 102 (268)
T PF09370_consen 27 SAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVK----DTPVIAGVCATDPFRDMDRFLD 102 (268)
T ss_dssp HHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-S----SS-EEEEE-TT-TT--HHHHHH
T ss_pred hhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhcc----CCCEEEEecCcCCCCcHHHHHH
Confidence 36777889999998821 100 01 111 334444444333222 2488988886543 57888888
Q ss_pred HHhcCCCCEEEEEecC--CHHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHH
Q 006969 171 AVKYAKRPRIHTFIAT--SGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK 245 (623)
Q Consensus 171 al~~a~~~~v~i~~~~--Sd~h~~~~l---~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~ 245 (623)
.|+..|...|.=|-.+ .|-+.+.+| |++- ++=.++++.|+++|+-.+-|. .+++. +++..+
T Consensus 103 ~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy----~~EVemi~~A~~~gl~T~~yv------f~~e~----A~~M~~ 168 (268)
T PF09370_consen 103 ELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGY----DREVEMIRKAHEKGLFTTAYV------FNEEQ----ARAMAE 168 (268)
T ss_dssp HHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--H----HHHHHHHHHHHHTT-EE--EE-------SHHH----HHHHHH
T ss_pred HHHHhCCceEEECCcceeeccHHHHHHHhcCCCH----HHHHHHHHHHHHCCCeeeeee------cCHHH----HHHHHH
Confidence 8888899887665222 232333332 4443 333578999999997432221 23333 445558
Q ss_pred cCCcEEee--cCcccc
Q 006969 246 VGATTLNI--PDTVGI 259 (623)
Q Consensus 246 aGa~~I~l--~DTvG~ 259 (623)
+|||.|++ .=|.|.
T Consensus 169 AGaDiiv~H~GlT~gG 184 (268)
T PF09370_consen 169 AGADIIVAHMGLTTGG 184 (268)
T ss_dssp HT-SEEEEE-SS----
T ss_pred cCCCEEEecCCccCCC
Confidence 89998764 334444
No 490
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=69.11 E-value=74 Score=35.72 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHhHcCCCEEEEecCCCChhH-------------HHHHHHHHHHhccccccCCCc-cceEEeecccchhhHHHHHH
Q 006969 105 DIARQLAKLGVDIIEAGFPAASKED-------------FEAVRTIAKEVGNAVDAESGY-VPVICGLSRCNERDIKTAWE 170 (623)
Q Consensus 105 ~Ia~~L~~~Gvd~IEvGfP~~s~~d-------------~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~~~dI~~a~e 170 (623)
+.++.|.++||+.|.+|.=+.+++. .+.++.+.+. +-. .+ +--|.|+-.-+.+++...++
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~-G~~-----~v~~dli~GlPgqt~e~~~~tl~ 226 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA-GFE-----SINFDLIYGLPHQTVESFRETLD 226 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc-CCC-----cEEEeEEEeCCCCCHHHHHHHHH
Confidence 5567777789999999864444321 1233333322 110 01 12466766677788888888
Q ss_pred HHhcCCCCEEEEEecC-CHHH--HHHHhC----CCHHHHHHHHHHHHHHHHHcCCCeE
Q 006969 171 AVKYAKRPRIHTFIAT-SGIH--MEHKLR----KTKQQVVEIARSMVKFARSLGCDDV 221 (623)
Q Consensus 171 al~~a~~~~v~i~~~~-Sd~h--~~~~l~----~t~ee~l~~~~~~v~~ak~~G~~~V 221 (623)
.+...+.++|.+|.=. .+.. .++.++ .+.++.+++...+++...+.|+..+
T Consensus 227 ~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~ 284 (453)
T PRK13347 227 KVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPI 284 (453)
T ss_pred HHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 7777788888876321 1111 111111 2456777778888888888887533
No 491
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=68.96 E-value=25 Score=37.85 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=39.9
Q ss_pred ecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCCeEEEccc---CCCCCCH
Q 006969 184 IATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRSDR 233 (623)
Q Consensus 184 ~~~Sd~h~~~~l~-~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e---da~r~d~ 233 (623)
+..-++|-..|++ .++++.++..+++++...+.|++.|||+.+ |=+|||.
T Consensus 62 vESvPvhedIK~g~~~rd~~Ieny~~tirnLa~~GI~vvCYNfMpv~dWtRTdl 115 (362)
T COG1312 62 VESVPVHEDIKLGTPTRDRYIENYKQTIRNLARAGIKVVCYNFMPVFDWTRTDL 115 (362)
T ss_pred ecCCCHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCcEEEeccccccCccccce
Confidence 4555677777776 578999999999999999999998888776 5556654
No 492
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=68.94 E-value=1.3e+02 Score=32.96 Aligned_cols=131 Identities=13% Similarity=0.069 Sum_probs=79.9
Q ss_pred HHHhcCCCCEEEEEecC-C----------HHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEcccC-------
Q 006969 170 EAVKYAKRPRIHTFIAT-S----------GIHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPED------- 227 (623)
Q Consensus 170 eal~~a~~~~v~i~~~~-S----------d~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~---~V~f~~ed------- 227 (623)
+..+.+|.+.|.|-.+- . -.++...+|-+.|+-++.+.+.++.+|+. |.+ .|.+++.|
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence 33456899998776532 1 11444557778888888888888888875 322 13445422
Q ss_pred ---------CCCCCHHHHHHHHHHHHHcCCcEEeecCcccc------cC-----H-HHHHHHHHHHHHhCCCCcceeEEE
Q 006969 228 ---------AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI------TM-----P-TEFGKLIADIKANTPGIENVVIST 286 (623)
Q Consensus 228 ---------a~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~------~~-----P-~~v~~li~~l~~~~~~~~~v~i~~ 286 (623)
..-.+++...++++.+.++|+|.|.+. .|. .. | .....+++.+++.+. +|+..
T Consensus 237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~----~pvi~ 310 (382)
T cd02931 237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVD----VPVIM 310 (382)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHHCC----CCEEE
Confidence 112467888999999999999999874 221 01 1 122356777887763 34433
Q ss_pred -eecCCcchHHHHHHHHHHhC-CCEE
Q 006969 287 -HCQNDLGLSTANTIAGACAG-ARQV 310 (623)
Q Consensus 287 -H~HND~GlAvANslaAv~aG-A~~V 310 (623)
...++ ...+..+++.| ||.|
T Consensus 311 ~G~i~~----~~~~~~~l~~g~~D~V 332 (382)
T cd02931 311 AGRMED----PELASEAINEGIADMI 332 (382)
T ss_pred eCCCCC----HHHHHHHHHcCCCCee
Confidence 22222 35566777776 6654
No 493
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=68.75 E-value=38 Score=37.38 Aligned_cols=101 Identities=11% Similarity=0.089 Sum_probs=55.2
Q ss_pred ceEEeecc-cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CC-eEEEcccCC
Q 006969 152 PVICGLSR-CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG-CD-DVEFSPEDA 228 (623)
Q Consensus 152 ~~i~~~~r-~~~~dI~~a~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G-~~-~V~f~~eda 228 (623)
|.|+.+.- +.+++....++.+..+|++.|.+-++.-.....+..+....+..+.+.+.++.+|+.- +. .|-.+| +.
T Consensus 115 pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP-n~ 193 (385)
T PLN02495 115 ILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP-NI 193 (385)
T ss_pred cEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC-Ch
Confidence 55655533 3556655555555556777666655432211112233222233344444445544431 22 233466 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCccc
Q 006969 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVG 258 (623)
Q Consensus 229 ~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG 258 (623)
..+.++++++.++||+.|.+-.|+.
T Consensus 194 -----t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 194 -----TDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred -----hhHHHHHHHHHHhCCCEEEEecccC
Confidence 2377889999999999999988876
No 494
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=68.71 E-value=1.6e+02 Score=30.87 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCC--CChhHHH----HHHHHHHHhccccccCCCccceEEeecccchhh-HHHH
Q 006969 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPA--ASKEDFE----AVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTA 168 (623)
Q Consensus 96 ~~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~--~s~~d~e----~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a 168 (623)
-..+++.|+.=++...+.|.|+|++-.+. .-..+++ .++.+.+..... ..+-+|.=.+....++ |..+
T Consensus 78 G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~-----~~lKVIlEt~~L~~ee~i~~a 152 (257)
T PRK05283 78 GNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAAN-----VLLKVIIETGELKDEALIRKA 152 (257)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCC-----ceEEEEEeccccCCHHHHHHH
Confidence 34578999999999999999999996541 1123443 334444432210 1112333333334443 6666
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-CeEEEcccCCCCCCHHHHHHHHHHHHHc-
Q 006969 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC-DDVEFSPEDAGRSDRKFLYEILGEVIKV- 246 (623)
Q Consensus 169 ~eal~~a~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~-~~V~f~~eda~r~d~e~l~~~~~~~~~a- 246 (623)
.+....+|++-|.....-+ .-+-|.+. ++.+++.+ ++.|. ..|.+-+ .++=.+.+...+++++..+.
T Consensus 153 ~~~a~~aGADFVKTSTGf~------~~gAt~ed-v~lm~~~i---~~~~~~~~vgIKA-sGGIrt~~~A~~~i~ag~~~l 221 (257)
T PRK05283 153 SEIAIKAGADFIKTSTGKV------PVNATLEA-ARIMLEVI---RDMGVAKTVGFKP-AGGVRTAEDAAQYLALADEIL 221 (257)
T ss_pred HHHHHHhCCCEEEcCCCCC------CCCCCHHH-HHHHHHHH---HhcccCCCeeEEc-cCCCCCHHHHHHHHHHHHHHh
Confidence 6666667887655422211 12334433 33333333 32221 1244444 35556677777877777654
Q ss_pred CCcEEeecCcccccCHHHHHHHHH
Q 006969 247 GATTLNIPDTVGITMPTEFGKLIA 270 (623)
Q Consensus 247 Ga~~I~l~DTvG~~~P~~v~~li~ 270 (623)
|.++++ |+|.=...-.-..++.+
T Consensus 222 g~~~~~-~~~fR~G~Ssll~~~~~ 244 (257)
T PRK05283 222 GADWAD-ARHFRFGASSLLASLLK 244 (257)
T ss_pred ChhhcC-cccEeeehHHhHHHHHH
Confidence 777766 66665544443333433
No 495
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=68.65 E-value=36 Score=33.50 Aligned_cols=95 Identities=21% Similarity=0.157 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 006969 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (623)
Q Consensus 230 r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 309 (623)
..+++...++++++ +.|.+.|-+ +.-..+|.. .+.|+.+++.+|+. .+.+++|.+ |-|. -....++++||+.
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~-~i~~d~k~~-d~~~--~~~~~~~~~Gad~ 79 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDR-KVLADLKTM-DAGE--YEAEQAFAAGADI 79 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCC-EEEEEEeec-cchH--HHHHHHHHcCCCE
Confidence 36778999999998 788887665 222333333 47888998887642 355666667 4442 2467789999999
Q ss_pred EEeccCCccCccCcccHHHHHHHHHhcc
Q 006969 310 VEVTINGIGERAGNASLEEVVMAFKCRG 337 (623)
Q Consensus 310 Vd~Tv~GlGERaGNa~lEevv~~L~~~~ 337 (623)
|-.-.. +++..+++++...+.+|
T Consensus 80 i~vh~~-----~~~~~~~~~i~~~~~~g 102 (206)
T TIGR03128 80 VTVLGV-----ADDATIKGAVKAAKKHG 102 (206)
T ss_pred EEEecc-----CCHHHHHHHHHHHHHcC
Confidence 843221 23345677777777643
No 496
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=68.65 E-value=1.1e+02 Score=30.87 Aligned_cols=125 Identities=18% Similarity=0.310 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHhHc-CCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcC
Q 006969 97 TLTSKEKLDIARQLAKL-GVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~-Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 175 (623)
..+.++.++.++.|.+. |.-.|++ |... .-.++++.|.+. + ....+ +. -...+....+.+ +
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKI--P~T~-~gl~ai~~L~~~-g--------i~v~~-T~-V~s~~Qa~~Aa~----A 121 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKI--PVTE-DGLKAIKKLSEE-G--------IKTNV-TA-IFSAAQALLAAK----A 121 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEE--cCcH-hHHHHHHHHHHc-C--------Cceee-EE-ecCHHHHHHHHH----c
Confidence 45789999999999988 7777777 6544 446778877764 1 11111 11 123344444444 3
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeec
Q 006969 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 254 (623)
Q Consensus 176 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~ 254 (623)
|.+.|..|+.-- ...+.+ -++.+.++.++++.+|.. ..+-. ++--++..+.+ +..+|++.+.++
T Consensus 122 GA~yvsP~vgR~-----~~~g~d---g~~~i~~i~~~~~~~~~~-tkil~--As~r~~~ei~~----a~~~Gad~vTv~ 185 (211)
T cd00956 122 GATYVSPFVGRI-----DDLGGD---GMELIREIRTIFDNYGFD-TKILA--ASIRNPQHVIE----AALAGADAITLP 185 (211)
T ss_pred CCCEEEEecChH-----hhcCCC---HHHHHHHHHHHHHHcCCC-ceEEe--cccCCHHHHHH----HHHcCCCEEEeC
Confidence 777777776522 234544 456667888888888865 33322 23334444433 556899999875
No 497
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=68.19 E-value=1.5e+02 Score=36.08 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhHcCCCEEEEecCC-CChhHHHHHHHHHHHhccccccCCCccceEEeeccc-chhhHHHHHHHHhcCCCC
Q 006969 101 KEKLDIARQLAKLGVDIIEAGFPA-ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWEAVKYAKRP 178 (623)
Q Consensus 101 e~Kl~Ia~~L~~~Gvd~IEvGfP~-~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~eal~~a~~~ 178 (623)
-|-..|.+.|+.+|..-+++=+|- .+.+|+..++...+..+-...+ ..+...... .+.-+.. ++.+... ++
T Consensus 621 ~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~-----~~~~vg~MIEtp~av~~-~deIa~~-vD 693 (795)
T PRK06464 621 LECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGE-----NGLKVIMMCEIPSNALL-AEEFLEY-FD 693 (795)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccc-----cCcEEEEEEcCHHHHHH-HHHHHHh-CC
Confidence 344566666766899888998996 4566765555544432111000 011111111 2222222 2223222 44
Q ss_pred EEEEEecCCHHHHHH------------HhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHc
Q 006969 179 RIHTFIATSGIHMEH------------KLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246 (623)
Q Consensus 179 ~v~i~~~~Sd~h~~~------------~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~a 246 (623)
- +|+.++|+-... .+....+++++.+...++.|+++|+. +..+.|-++. .++ .+..+.+.
T Consensus 694 f--i~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~-vgicge~a~~-~p~----~~~~l~~~ 765 (795)
T PRK06464 694 G--FSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKY-VGICGQAPSD-HPD----FAEWLVEE 765 (795)
T ss_pred E--EEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCE-EEEcCCCCCC-cHH----HHHHHHHC
Confidence 4 567888865421 12334578999999999999999985 7777754322 144 44566678
Q ss_pred CCcEEeec
Q 006969 247 GATTLNIP 254 (623)
Q Consensus 247 Ga~~I~l~ 254 (623)
|++.+.+.
T Consensus 766 G~~~ls~~ 773 (795)
T PRK06464 766 GIDSISLN 773 (795)
T ss_pred CCCEEEEc
Confidence 99998864
No 498
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=68.05 E-value=52 Score=31.05 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCCeEEEcccCCCCCCHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHH-HHHHHHHhCCCCcceeEE
Q 006969 207 RSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGK-LIADIKANTPGIENVVIS 285 (623)
Q Consensus 207 ~~~v~~ak~~G~~~V~f~~eda~r~d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~-li~~l~~~~~~~~~v~i~ 285 (623)
-..++..+++|...|.--+|-.+.++ .+.+.|++.+-.+=..|.-.|.++-+ .+..++..+...++..+.
T Consensus 31 n~fieELkKygvttvVRVCe~TYdt~---------~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cva 101 (173)
T KOG2836|consen 31 NKFIEELKKYGVTTVVRVCEPTYDTT---------PLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVA 101 (173)
T ss_pred HHHHHHHHhcCCeEEEEecccccCCc---------hhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEE
Confidence 35678889999875433344344443 34578999999999999999988765 345444444322247899
Q ss_pred EeecCCcchH-HHHHHHHHHhCCC
Q 006969 286 THCQNDLGLS-TANTIAGACAGAR 308 (623)
Q Consensus 286 ~H~HND~GlA-vANslaAv~aGA~ 308 (623)
+||--.+|-| |--+|+-+++|-.
T Consensus 102 vhcvaglgrapvlvalalie~gmk 125 (173)
T KOG2836|consen 102 VHCVAGLGRAPVLVALALIEAGMK 125 (173)
T ss_pred EEeecccCcchHHHHHHHHHcccc
Confidence 9998877776 3356677777754
No 499
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=67.93 E-value=1.5e+02 Score=32.24 Aligned_cols=158 Identities=25% Similarity=0.295 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccchhhHHHHHHHHhcCC
Q 006969 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (623)
Q Consensus 97 ~~t~e~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a~ 176 (623)
.+|.+++..| +...+.|+|+|=+.|-. +++|...+|.+....+.. ..+.++|- +++.++.--+-+..
T Consensus 173 ~LtekD~~di-~fa~~~~vD~IalSFVr-sa~dV~~lr~~l~~~~~~----~~iiaKIE-----~~~~v~nl~eI~~~-- 239 (348)
T PF00224_consen 173 ALTEKDKEDI-KFAVENGVDFIALSFVR-SAEDVKELRKILGEKGKD----IKIIAKIE-----TKEAVENLDEILEA-- 239 (348)
T ss_dssp SS-HHHHHHH-HHHHHTT-SEEEETTE--SHHHHHHHHHHHTCTTTT----SEEEEEE------SHHHHHTHHHHHHH--
T ss_pred cCCHHHHHHH-HHHHHcCCCEEEecCCC-chHHHHHHHHHhhhcCcc----cceeeccc-----cHHHHhhHHHHhhh--
Confidence 4677887776 66778899999998864 677777777665432211 01122221 33333322122222
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc------CCCCCCHHHHHHHHHHHHHcCCcE
Q 006969 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE------DAGRSDRKFLYEILGEVIKVGATT 250 (623)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~G~~~V~f~~e------da~r~d~e~l~~~~~~~~~aGa~~ 250 (623)
.+.| .++=.|+=++ ...+++...-+..++.|+..|.. |.+..+ ...+-+...+.+++.++.+ |+|.
T Consensus 240 sDgi--miaRGDLg~e----~~~e~v~~~Qk~ii~~~~~~~kp-vi~ATq~Lesm~~~~~PTRaEv~Dv~nav~d-g~d~ 311 (348)
T PF00224_consen 240 SDGI--MIARGDLGVE----IPFEKVPIIQKRIIKKCNAAGKP-VIVATQMLESMIKNPIPTRAEVSDVANAVLD-GADA 311 (348)
T ss_dssp SSEE--EEEHHHHHHH----STGGGHHHHHHHHHHHHHHHT-E-EEEESSSSGGGGTSSS--HHHHHHHHHHHHH-T-SE
T ss_pred cCeE--EEecCCccee----eeHHHHHHHHHHHHHHHHHhCCC-eeehhHhHHHHHhCCCCchHHHhhHHHHHHc-CCCE
Confidence 2443 3444443332 45556666667889999999975 655222 3344566778888888776 9999
Q ss_pred Eeec-CcccccCHHHHHHHHHHHHHh
Q 006969 251 LNIP-DTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 251 I~l~-DTvG~~~P~~v~~li~~l~~~ 275 (623)
|.|. -|.=.-.|.+.-+.+..+.+.
T Consensus 312 vmLs~ETa~G~~p~~~v~~~~~i~~~ 337 (348)
T PF00224_consen 312 VMLSGETAIGKYPVEAVKTMARIIRE 337 (348)
T ss_dssp EEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCHHHHHHHHHHHHHH
Confidence 9998 677778898888777776654
No 500
>PLN02489 homocysteine S-methyltransferase
Probab=67.87 E-value=1.8e+02 Score=31.38 Aligned_cols=149 Identities=14% Similarity=0.139 Sum_probs=79.4
Q ss_pred CCHHHHHHH----HHHHhHcCCCEEEEe-cCCCChhHHHHHHHHHHHhccccccCCCccceEEeecccc----h--hhHH
Q 006969 98 LTSKEKLDI----ARQLAKLGVDIIEAG-FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN----E--RDIK 166 (623)
Q Consensus 98 ~t~e~Kl~I----a~~L~~~Gvd~IEvG-fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~----~--~dI~ 166 (623)
.+.++-.+. ++.|.+.|||.|=+. +|. -.|...+....+..... .|.++.++-.. . ..++
T Consensus 160 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~--l~E~~a~~~~~~~~~~~-------~p~~iS~t~~~~~~l~~G~~~~ 230 (335)
T PLN02489 160 VTLEKLKDFHRRRLQVLAEAGPDLIAFETIPN--KLEAQAYVELLEEENIK-------IPAWISFNSKDGVNVVSGDSLL 230 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeccCC--hHHHHHHHHHHHHcCCC-------CeEEEEEEeCCCCccCCCCcHH
Confidence 566665555 567778999988775 553 34444444444332111 24455554111 1 2356
Q ss_pred HHHHHHhcC-CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccc-----CC--------CCC
Q 006969 167 TAWEAVKYA-KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPE-----DA--------GRS 231 (623)
Q Consensus 167 ~a~eal~~a-~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ak~~-G~~~V~f~~e-----da--------~r~ 231 (623)
.+++.+... ++..|.+-. +++-++ ..+++.++.. ... +.+.|- |. +..
T Consensus 231 ~~~~~~~~~~~~~~iGiNC-~~p~~~---------------~~~l~~l~~~~~~p-l~vyPNaG~~~~~~~~~~~~~~~~ 293 (335)
T PLN02489 231 ECASIADSCKKVVAVGINC-TPPRFI---------------HGLILSIRKVTSKP-IVVYPNSGETYDGEAKEWVESTGV 293 (335)
T ss_pred HHHHHHHhcCCceEEEecC-CCHHHH---------------HHHHHHHHhhcCCc-EEEECCCCCCCCCccCcccCCCCC
Confidence 666665432 344555443 233222 2333333333 222 333221 11 123
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCcccccCHHHHHHHHHHHHHh
Q 006969 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (623)
Q Consensus 232 d~e~l~~~~~~~~~aGa~~I~l~DTvG~~~P~~v~~li~~l~~~ 275 (623)
+++++.+.++...+.|+..|.=|= ..+|+.|+.+-+.++.+
T Consensus 294 ~~~~~~~~~~~~~~~Ga~iIGGCC---gt~P~hI~al~~~l~~~ 334 (335)
T PLN02489 294 SDEDFVSYVNKWRDAGASLIGGCC---RTTPNTIRAISKALSER 334 (335)
T ss_pred CHHHHHHHHHHHHHCCCcEEeeCC---CCCHHHHHHHHHHHhcC
Confidence 578888999999999998775221 13899998888777654
Done!