RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006969
(623 letters)
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 216 bits (550), Expect = 7e-66
Identities = 82/318 (25%), Positives = 132/318 (41%), Gaps = 25/318 (7%)
Query: 71 PNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF 130
P+R+ D LRDG Q+ ++ K + L ++G IE GFP+AS+ DF
Sbjct: 4 PDRVIDRA-PLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQTDF 62
Query: 131 EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIH 190
+ VR I ++ D I L++C I+ ++A A R +H + +TS +
Sbjct: 63 DFVREIIEQGAIPDDVT------IQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQ 116
Query: 191 MEHKLRKT----KQQVVEIARSMVKFARSLGCD--DVEFSPEDAGRSDRKFLYEILGEVI 244
R + + AR V+ A E+SPE ++ ++ ++ V
Sbjct: 117 RRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVG 176
Query: 245 KV------GATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298
+V N+P TV +T P + I + N E+V++S H ND G + A
Sbjct: 177 EVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAA 236
Query: 299 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASK 358
G AGA ++E + G GER GN L + + R G+ I+ +I +
Sbjct: 237 AELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSR------GVDPQIDFSNIDEIRR 290
Query: 359 MVEEYTGLHVQPHKAIVG 376
VE L V G
Sbjct: 291 TVEYCNQLPVHERHPYGG 308
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 178 bits (453), Expect = 6e-52
Identities = 40/314 (12%), Positives = 91/314 (28%), Gaps = 17/314 (5%)
Query: 73 RIPDPNYVRVFDTTLRDGEQSPGAT-LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFE 131
+ +P V + + LRD QS AT + ++ + + G +E A
Sbjct: 4 EVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIR 63
Query: 132 AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHM 191
+ E + L R + + +
Sbjct: 64 FLNEDPWERLRTFRKLMPNSR-LQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRV 122
Query: 192 EHKLRKTKQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250
+ + G + + ++ G+++ +GA +
Sbjct: 123 -----FDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADS 177
Query: 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310
+ + D + P +I IK + I+ HC + G++ + + AG V
Sbjct: 178 IALKDMAALLKPQPAYDIIKAIKDTYG--QKTQINLHCHSTTGVTEVSLMKAIEAGVDVV 235
Query: 311 EVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQP 370
+ I+ + G+ E V + G T ++ + + + +
Sbjct: 236 DTAISSMSLGPGHNPTESVAEMLEGT------GYTTNLDYDRLHKIRDHFKAIRPKYKKF 289
Query: 371 H-KAIVGANAFAHE 383
K +V + F +
Sbjct: 290 ESKTLVDTSIFKSQ 303
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 159 bits (401), Expect = 8e-45
Identities = 62/305 (20%), Positives = 110/305 (36%), Gaps = 33/305 (10%)
Query: 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKE 139
+ + D TLRDG + T + IAR L K VD IE +
Sbjct: 8 LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 67
Query: 140 VGNAVDAESG-----YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHK 194
++A +G + + + D+K A++A A+ R+ T + + +H
Sbjct: 68 DLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQA--GARVVRVATHCTEADVSKQHI 125
Query: 195 LRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 254
++AR+LG D + + L E + GAT + +
Sbjct: 126 ----------------EYARNLGM-DTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA 168
Query: 255 DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314
D+ G + + KA + H ++L L AN+I G +V+ ++
Sbjct: 169 DSGGAMSMNDIRDRMRAFKAVLK--PETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASL 226
Query: 315 NGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIV-MASKMVEEYTGLHVQPHKA 373
G+G AGNA LE + + G G + ++ A +V V+ +
Sbjct: 227 AGMGAGAGNAPLEVFIAVAERL------GWNHGTDLYTLMDAADDIVRPLQDRPVRVDRE 280
Query: 374 IVGAN 378
+G
Sbjct: 281 TLGLG 285
>d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA,
allosteric (dimerisation) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 152
Score = 73.6 bits (180), Expect = 4e-16
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 28/149 (18%)
Query: 480 WKLLDMQVTCGTL--GLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLL 537
+ + V G ++ T + NG E +G GP+ + A+ V +L
Sbjct: 4 LERIRQHVDAADDDGGTTSITATVKI-NGVETEISGSGNGPLAAFVHALA-DVGFDVAVL 61
Query: 538 EYSMNAVTAGIDAIATTRVLIR------------------------GEKSQLSTHASTGE 573
+Y +A++AG DA A V + + ++
Sbjct: 62 DYYEHAMSAGDDAQAAAYVEASVTIASPAQPGEAGRHASDPVTIASPAQPGEAGRHASDP 121
Query: 574 TVQRTFSGTGAGMDIVVSSVKAYIGALNK 602
+T G G I +S++A + A+N+
Sbjct: 122 VTSKTVWGVGIAPSITTASLRAVVSAVNR 150
>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur
protein methyltransferase MetR {Moorella thermoacetica
[TaxId: 1525]}
Length = 262
Score = 32.4 bits (73), Expect = 0.14
Identities = 10/106 (9%), Positives = 30/106 (28%), Gaps = 10/106 (9%)
Query: 104 LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER 163
+ AR+ + G ++ A ++ A+ + + + + + +
Sbjct: 28 QEWARRQEEGGARALDLNVGPAVQDKVSAMEWLVEVTQEVSN-----LTLCLDST----- 77
Query: 164 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSM 209
+IK +K K + +E + +
Sbjct: 78 NIKAIEAGLKKCKNRAMINSTNAEREKVEKLFPLAVEHGAALIGLT 123
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 31.8 bits (71), Expect = 0.27
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 102 EKLDIARQLAKLGVDII--EAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157
+ + AR+L K G+ +I G P DF+ + + A+ Y GL
Sbjct: 17 DVVLPARELEKKGIKVIRLNIGDPVKF--DFQPPEHMKEAYCKAIKEGHNYYGDSEGL 72
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 30.5 bits (68), Expect = 0.51
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 101 KEKLDIARQLAKLGVDIIEAGFP 123
+ R L G D+IE G P
Sbjct: 31 ATTAEALRLLDGCGADVIELGVP 53
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 68
Score = 27.8 bits (62), Expect = 0.63
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 423 GRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIAL 468
GR AL D LG L ++++ + F + + D +L
Sbjct: 15 GRQALIDANLRLGLALAEDEIDYLQEAFT---KLGRNPNDIELYMF 57
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 29.1 bits (64), Expect = 1.6
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 104 LDIARQLAKLGVDIIEAGFP 123
L I L G D +E G P
Sbjct: 34 LKIIDTLIDAGADALELGVP 53
>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate
synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 243
Score = 28.9 bits (65), Expect = 1.6
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 19/93 (20%)
Query: 75 PDPNYVRVFDTTLRDGEQSPGATL-------------TSKEKLDIARQLAKLGVDIIEAG 121
+ N +++ D + G TL + E +D+ + L + VD++ +
Sbjct: 73 SENNTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSY 132
Query: 122 FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI 154
P S+ EA + A+ A+DA +V +
Sbjct: 133 LPVGSE---EADKFYAQ---CAIDAGVAFVNAL 159
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 28.7 bits (64), Expect = 1.6
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 106 IARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI 165
+AR L + G+ ++ A + + E + K G +P C LS NE DI
Sbjct: 26 VARALVQQGLKVVGC---ARTVGNIEELAAECKSAGYPGTL----IPYRCDLS--NEEDI 76
Query: 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKL 195
+ + A++ ++ + I +G+ L
Sbjct: 77 LSMFSAIR-SQHSGVDICINNAGLARPDTL 105
>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine
synthase MetH, C-terminal domain {Thermotoga maritima
[TaxId: 2336]}
Length = 260
Score = 28.9 bits (64), Expect = 1.7
Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 16/151 (10%)
Query: 104 LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVD----AESGYVPVICGLSR 159
+ A+ + G ++++ F S+ D V I + + + + V + R
Sbjct: 43 IKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALR 102
Query: 160 CNERDIKT------AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFA 213
E + + + M + K+ ++ E +K
Sbjct: 103 AYPGRSLFNSAKVDEEELEMKINLLKKYG-GTLIVLLMGKDVPKSFEERKEYFEKALKIL 161
Query: 214 RSLG-----CDDVEFSPEDAGRSDRKFLYEI 239
D P A + L I
Sbjct: 162 ERHDFSDRVIFDPGVLPLGAEGKPVEVLKTI 192
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId:
1299]}
Length = 303
Score = 28.8 bits (63), Expect = 2.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 198 TKQQVVEIARSMVKFARSLGCDDVEFSPE--DAGRSDR---KFLYEILGEV 243
T Q ++I + +G D VE +P GRS+ + + E L EV
Sbjct: 248 TYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEV 298
>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 251
Score = 28.1 bits (62), Expect = 2.7
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 106 IARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI 165
IA+ LA+ G ++ A EA + + ++ G + C +S N ++
Sbjct: 21 IAQGLAEAGCSVVVASRNLEEAS--EAAQKLTEKYGVET------MAFRCDVS--NYEEV 70
Query: 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT 198
K EAVK K ++ T + +GI+ H +
Sbjct: 71 KKLLEAVK-EKFGKLDTVVNAAGINRRHPAEEF 102
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 28.0 bits (62), Expect = 2.8
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 106 IARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI 165
A A+ G + G E + +++ A +E V+ ++ +
Sbjct: 21 TAVLFAREGAKVTITGR------HAERLEETRQQILAAGVSEQNVNSVVADVT--TDAGQ 72
Query: 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT 198
K ++ + +G + KT
Sbjct: 73 DEILSTTL-GKFGKLDILVNNAGAAIPDSQSKT 104
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
5693]}
Length = 298
Score = 27.2 bits (59), Expect = 5.6
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 198 TKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSDR---KFLYEIL 240
+ Q+ ++ K + D E +P + RS R Y +
Sbjct: 245 SAQEAFDMCFLAGKTPTVMMMDMSELNPLVEEYRSPRVAVYMFYHFV 291
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 27.0 bits (59), Expect = 5.8
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 104 LDIARQLAKLGVDIIEAGFP-AASKEDFEAVRTIAKEVGNAVDAESGYVPVIC 155
+I + +A G D + + E + + G + E +
Sbjct: 20 DEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVV 72
>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 272
Score = 27.3 bits (60), Expect = 6.1
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 106 IARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI 165
A A+ G ++ G E + + + + +E V+ ++ E
Sbjct: 21 TAILFAQEGANVTITGR------SSERLEETRQIILKSGVSEKQVNSVVADVT--TEDGQ 72
Query: 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT 198
+ + +I + +G + T
Sbjct: 73 DQIINSTL-KQFGKIDVLVNNAGAAIPDAFGTT 104
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 26.8 bits (58), Expect = 6.2
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC 218
R N++D+ +A+ A P I + + + + + + C
Sbjct: 3 RLNDQDLDILVKALNSASNPAI---VLGPDVDAANANADCVMLAERLKAPVWVAPSAPRC 59
Query: 219 DDVEFSPEDAG 229
P G
Sbjct: 60 PFPTRHPCFRG 70
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase
UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Length = 240
Score = 26.9 bits (58), Expect = 7.4
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEV 140
+ + + R++A VD I P + F AVR+ E+
Sbjct: 201 YGGDDMAVHREIATSDVDYINLDRP----DLFAAVRSGMAEL 238
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 27.0 bits (59), Expect = 8.6
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 75 PDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDII--EAGFPAASKEDFEA 132
DP F + + P L + E+ +A V+ I EAG
Sbjct: 154 TDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMG 213
Query: 133 VRTIAKEVGNAVDAESGYVPVICGLSRCN 161
VR + A+ + GL+R
Sbjct: 214 VRELCTRHQVLFIADE----IQTGLARTG 238
>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR
{Escherichia coli [TaxId: 562]}
Length = 272
Score = 26.6 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 256 TVGITMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLS 295
T+ +TM + K +I N PG+ +N+V+ N GL+
Sbjct: 131 TIQLTMAVQLNKAFHEIINNYPGVADNIVVGVFYGNSHGLT 171
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.377
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,220,765
Number of extensions: 106438
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 38
Length of query: 623
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 532
Effective length of database: 1,158,166
Effective search space: 616144312
Effective search space used: 616144312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)