BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006970
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/641 (51%), Positives = 438/641 (68%), Gaps = 46/641 (7%)
Query: 21 RHPLDSLRPSEFTRVQTIVKTSYP--SNNLSFHYVGMDEPDKAVVYSWLSN-SKTKFPRR 77
+HPLD L EF VQTIV+ YP +N L+FHY+G+D+P+K V + ++ + PR+
Sbjct: 2 QHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRK 61
Query: 78 AIVIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVK 137
V+A N QTHEI+++L RSIVSD ++ G+GFP+L+++EQ L L Y PF SVK
Sbjct: 62 IFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVK 121
Query: 138 KRGLNISDVVCSASTVGWYGEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEMK 197
KRGLN+S++VCS+ T+GW+GE+K+ R ++ CF + T+N+++RPI GITIV D++ MK
Sbjct: 122 KRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCF-MKESTVNIYVRPITGITIVADLDLMK 180
Query: 198 VTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSSTR-PGFKINGNTVKWANWVF 256
+ EY+DR++ +P E TEY++SK PPFGP+ +S+ + + PGF+ING++V WANW F
Sbjct: 181 IVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKF 240
Query: 257 NVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE-------------- 302
++GFD R G +IS ASIYD+ HK RRVLY+G+ISELF+PYQDP+E
Sbjct: 241 HIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFG 300
Query: 303 ------------GC-------------QDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPG 337
C +GTP+ NA+C+FE++ G++MWRHTE +P
Sbjct: 301 FGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPN 359
Query: 338 H-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQI 396
+ E R EV+L+VR + TVGN D +IDWEFK SGSIK + LSG+LE+K + D+I
Sbjct: 360 ESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEI 419
Query: 397 KEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKSYWTV 456
KED HG LV+ NSI I HDHF YYLD DIDG NSFEKT L T R + ++ RKSYWT
Sbjct: 420 KEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTT 479
Query: 457 EKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIR 516
E +TAKTE +A++ + P E +VNP+ KT +G+ VGYRL+P P+L EDDYPQIR
Sbjct: 480 ETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIR 539
Query: 517 AGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHA 576
FTNYNVWVT Y ++EK++GG YVD S GDDTL WT NREI N DIV+W+ +GIHH
Sbjct: 540 GAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHV 599
Query: 577 PCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIPPKHVQRP 617
P QEDFP+MP +S FELRPTNFFE NPVLK + P+ V P
Sbjct: 600 PAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWP 640
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/641 (51%), Positives = 438/641 (68%), Gaps = 46/641 (7%)
Query: 21 RHPLDSLRPSEFTRVQTIVKTSYP--SNNLSFHYVGMDEPDKAVVYSWLSN-SKTKFPRR 77
+HPLD L EF VQTIV+ YP +N L+FHY+G+D+P+K V + ++ + PR+
Sbjct: 7 QHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRK 66
Query: 78 AIVIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVK 137
V+A N QTHEI+++L RSIVSD ++ G+GFP+L+++EQ L L Y PF SVK
Sbjct: 67 IFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVK 126
Query: 138 KRGLNISDVVCSASTVGWYGEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEMK 197
KRGLN+S++VCS+ T+GW+GE+K+ R ++ CF + T+N+++RPI GITIV D++ MK
Sbjct: 127 KRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCF-MKESTVNIYVRPITGITIVADLDLMK 185
Query: 198 VTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSSTR-PGFKINGNTVKWANWVF 256
+ EY+DR++ +P E TEY++SK PPFGP+ +S+ + + PGF+ING++V WANW F
Sbjct: 186 IVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKF 245
Query: 257 NVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE-------------- 302
++GFD R G +IS ASIYD+ HK RRVLY+G+ISELF+PYQDP+E
Sbjct: 246 HIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFG 305
Query: 303 ------------GC-------------QDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPG 337
C +GTP+ NA+C+FE++ G++MWRHTE +P
Sbjct: 306 FGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPN 364
Query: 338 H-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQI 396
+ E R EV+L+VR + TVGN D +IDWEFK SGSIK + LSG+LE+K + D+I
Sbjct: 365 ESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEI 424
Query: 397 KEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKSYWTV 456
KED HG LV+ NSI I HDHF YYLD DIDG NSFEKT L T R + ++ RKSYWT
Sbjct: 425 KEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTT 484
Query: 457 EKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIR 516
E +TAKTE +A++ + P E +VNP+ KT +G+ VGYRL+P P+L EDDYPQIR
Sbjct: 485 ETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIR 544
Query: 517 AGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHA 576
FTNYNVWVT Y ++EK++GG YVD S GDDTL WT NREI N DIV+W+ +GIHH
Sbjct: 545 GAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHV 604
Query: 577 PCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIPPKHVQRP 617
P QEDFP+MP +S FELRPTNFFE NPVLK + P+ V P
Sbjct: 605 PAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWP 645
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 199/645 (30%), Positives = 309/645 (47%), Gaps = 72/645 (11%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSN-NLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 153
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 154 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 211
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 212 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 271 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 326
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGCQ------- 305
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP G
Sbjct: 327 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLDS 384
Query: 306 --------------------------------DGTPVKTPNAVCIFERHAGDVMWRHTEA 333
G P++ P A+ +FER+AG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 334 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 392
P E R LVVR ++TVGNYDYI DW F +G+I + G +G+ VK V+ T
Sbjct: 444 GQPNVSTERR---ELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 500
Query: 393 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 450
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 501 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 559
Query: 451 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 504
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 560 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 618
Query: 505 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 564
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 619 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 678
Query: 565 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 609
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 199/645 (30%), Positives = 310/645 (48%), Gaps = 72/645 (11%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSN-NLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 153
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 154 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 211
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 212 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 271 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 326
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG--------- 303
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP G
Sbjct: 327 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLDS 384
Query: 304 --------------CQD----------------GTPVKTPNAVCIFERHAGDVMWRHTEA 333
+D G P++ P A+ +FER+AG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 334 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 392
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 444 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 500
Query: 393 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 450
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 501 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 559
Query: 451 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 504
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 560 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 618
Query: 505 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 564
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 619 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 678
Query: 565 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 609
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 198/645 (30%), Positives = 308/645 (47%), Gaps = 72/645 (11%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSN-NLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 148
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 149 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 206
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 207 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 266 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 321
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGCQ------- 305
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP G
Sbjct: 322 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLES 379
Query: 306 --------------------------------DGTPVKTPNAVCIFERHAGDVMWRHTEA 333
G P++ P A+ +FER+AG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 334 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 392
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 439 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 495
Query: 393 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 450
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 496 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 554
Query: 451 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 504
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 555 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 613
Query: 505 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 564
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 614 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 673
Query: 565 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 609
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 674 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 198/645 (30%), Positives = 308/645 (47%), Gaps = 72/645 (11%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSN-NLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 148
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 149 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 206
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 207 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 266 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 321
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGCQ------- 305
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP G
Sbjct: 322 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLNS 379
Query: 306 --------------------------------DGTPVKTPNAVCIFERHAGDVMWRHTEA 333
G P++ P A+ +FER+AG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 334 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 392
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 439 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 495
Query: 393 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 450
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 496 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 554
Query: 451 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 504
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 555 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 613
Query: 505 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 564
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 614 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 673
Query: 565 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 609
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 674 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 198/645 (30%), Positives = 308/645 (47%), Gaps = 72/645 (11%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSN-NLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 89 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 148
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 149 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 206
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 207 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 266 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 321
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGCQ------- 305
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +PY DP G
Sbjct: 322 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPYGDPDIGWYFKAYLAS 379
Query: 306 --------------------------------DGTPVKTPNAVCIFERHAGDVMWRHTEA 333
G P++ P A+ +FER+AG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 334 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 392
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 439 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 495
Query: 393 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 450
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 496 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 554
Query: 451 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 504
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 555 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 613
Query: 505 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 564
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 614 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 673
Query: 565 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 609
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 674 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 718
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 198/645 (30%), Positives = 310/645 (48%), Gaps = 72/645 (11%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSN-NLSFHYVGMDEPDKAVVYSW-LSNSKTKFPRRAI 79
HPL++L E + IVK S N F + + PDK V+++ L N PR+A
Sbjct: 94 HPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKAD 153
Query: 80 VIARHNHQTHEIIVDLSKRSIVS-DKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKK 138
VI E +VDL ++S + HG ++ L++ + ++ E F A+VKK
Sbjct: 154 VIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHG--MVLLDDFASVQNIINNSEEFAAAVKK 211
Query: 139 RGL-NISDVVCSASTVGWY----GEKKSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDI 193
RG+ + V+ + TVG++ G K+ R+LK Y D G N + PIE + VVD+
Sbjct: 212 RGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV-ISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 194 EEMKVTEYNDREVAPIP-KPEPTEYRLSKLKPPFGPRLNSVATSSTRPGFKINGNTVKWA 252
E+ K+ + + V P+P P + R ++ P P + I G+ + W
Sbjct: 271 EQKKIVKIEEGPVVPVPMTARPFDGR-DRVAPAVKPMQ---IIEPEGKNYTITGDMIHWR 326
Query: 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG--------- 303
NW F++ ++RVG +IST + Y+ N K R+V+Y G + + +P+ DP G
Sbjct: 327 NWDFHLSMNSRVGPMISTVT-YNDNGTK-RKVMYEGSLGGMIVPFGDPDIGWYFKAYLDS 384
Query: 304 --------------CQD----------------GTPVKTPNAVCIFERHAGDVMWRHTEA 333
+D G P++ P A+ +FER+AG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 334 EMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEY-TY 392
P E R LVVR ++TVGN DYI DW F +G+I + G +G+ VK V+ T
Sbjct: 444 GQPNVSTERR---ELVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTM 500
Query: 393 VDQIKED--QHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 450
D+ +D ++GTL+ N + H H N+ LDLD+DG NS V + NT PR
Sbjct: 501 HDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 559
Query: 451 KSYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGS------IIG 504
S V + E +A D + L NP+K+ ++G+PV Y+++P + G
Sbjct: 560 TSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKG 618
Query: 505 PMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTD 564
D++ R F + +WVT Y E++ G Y ++S D L Q++ N ++NTD
Sbjct: 619 AQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTD 678
Query: 565 IVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVI 609
V+W T G H E++P+MPT L+P NFF+ P L +
Sbjct: 679 AVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL 723
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 167/648 (25%), Positives = 286/648 (44%), Gaps = 79/648 (12%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 ------------------------GCQD---------------GTPVKTPNAVCIFERHA 323
GC G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 324 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 383
G ++ +H++ + + R +V+ T+GNYDY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 444 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 502
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 503 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 560
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 561 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 166/648 (25%), Positives = 285/648 (43%), Gaps = 79/648 (12%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 ------------------------GCQD---------------GTPVKTPNAVCIFERHA 323
GC G P + N +C+ E
Sbjct: 290 IRSWQNYFATGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 324 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 383
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 444 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 502
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 503 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 560
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 561 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 166/648 (25%), Positives = 285/648 (43%), Gaps = 79/648 (12%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 ------------------------GCQD---------------GTPVKTPNAVCIFERHA 323
GC G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 324 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 383
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 444 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 502
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 503 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 560
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 561 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 166/648 (25%), Positives = 285/648 (43%), Gaps = 79/648 (12%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 ------------------------GCQD---------------GTPVKTPNAVCIFERHA 323
GC G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 324 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 383
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 444 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 502
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 503 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 560
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 561 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 166/648 (25%), Positives = 285/648 (43%), Gaps = 79/648 (12%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 ------------------------GCQD---------------GTPVKTPNAVCIFERHA 323
GC G P + N +C+ E
Sbjct: 290 IRSWQNYFKTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 324 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 383
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 444 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 502
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 503 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 560
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 561 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 166/648 (25%), Positives = 285/648 (43%), Gaps = 79/648 (12%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 1 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 52
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 53 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 110
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 111 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 170
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 171 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 229
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 230 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 287
Query: 303 ------------------------GCQD---------------GTPVKTPNAVCIFERHA 323
GC G P + N +C+ E
Sbjct: 288 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 347
Query: 324 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 383
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 348 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 404
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 405 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 457
Query: 444 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 502
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 458 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 516
Query: 503 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 560
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 517 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 575
Query: 561 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 576 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 623
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 166/648 (25%), Positives = 285/648 (43%), Gaps = 79/648 (12%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 ------------------------GCQD---------------GTPVKTPNAVCIFERHA 323
GC G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 324 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 383
G ++ +H++ + + R +V+ T+GNYDY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
D I + +A A H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQAIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 444 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 502
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 503 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 560
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 561 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ DIV+W+T G+ H P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 165/648 (25%), Positives = 284/648 (43%), Gaps = 79/648 (12%)
Query: 15 PISSSKRHPLDSLRPSEFTRVQTIVKTSY---PSNNLSFHYVGMDEPDKAVVYSWLSNSK 71
P + P E + VQ I++T+ P ++ Y+G+ +P + + S+
Sbjct: 3 PSTIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIA--YLGVLDPARG------AGSE 54
Query: 72 TKFPR-RAIVIARHNHQTHEIIVDLSKRSIVS----DKVYTGHGFPLLTLEEQHAGAALV 126
+ R R + + E+ V ++ +++S D TG P+L E + L+
Sbjct: 55 AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGE-LPVLEEEFEVV-EQLL 112
Query: 127 LAYEPFKASVKKRGLNISDVVCSASTVG--WYGEKKSKRVLKFPCFYTDQGTINMFLRPI 184
E + ++ R L++S V + + G Y E++ +R+L+ F D + + P+
Sbjct: 113 ATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPV 172
Query: 185 EGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVA-TSSTRPGFK 243
+G+ VD+ +VT D V P+P E Y +L P ++ T P F
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFT 231
Query: 244 I-NGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSE 302
+ GN ++W W +VGFD R G ++ + D + + R ++ R I+E+ +PY DPS
Sbjct: 232 VTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGDPSP 289
Query: 303 ------------------------GCQD---------------GTPVKTPNAVCIFERHA 323
GC G P + N +C+ E
Sbjct: 290 IRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDW 349
Query: 324 GDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVL 383
G ++ +H++ + + R +V+ T+GN DY W G+I+ +GV+
Sbjct: 350 G-ILAKHSD--LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVV 406
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
D I + +A A H H + LD+ IDG+ N E+ +V R+
Sbjct: 407 FTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVV-RQT 459
Query: 444 TNVNTPRKSYWTVEKETAKTEFEARLNLDTKPME-FALVNPSKKTKIGHPVGYRLLPGSI 502
R + ++ ++ E EA D + + + NP K ++ PVGY+L +
Sbjct: 460 MGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHN- 518
Query: 503 IGPMLMEDDYPQI--RAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREI 560
P L+ D I RA F ++WVT Y E+Y G++V+Q G L + +R+I
Sbjct: 519 -QPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDI 577
Query: 561 ENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ DIV+W+T G+ P ED+P+MP + GF+LRP FF+ +PVL V
Sbjct: 578 DGQDIVVWHTFGLTAFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 171/654 (26%), Positives = 278/654 (42%), Gaps = 82/654 (12%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 82
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 83 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 141
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 142 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 199
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 200 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 253
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDP--- 300
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 254 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFP 311
Query: 301 ---------------------SEGC---------------QDGTPVKTPNAVCIFERHAG 324
S GC + G P+ NAVCI E G
Sbjct: 312 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 371
Query: 325 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 384
++++H++ V LVV + T NY+Y + W F G+I++ + L+G+L
Sbjct: 372 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILN 430
Query: 385 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 444
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 431 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 486
Query: 445 NVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLP 499
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 487 -LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVS 545
Query: 500 GSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DG 556
+ E RA + +++V V PYK + Y G++V Q GD + +W DG
Sbjct: 546 TQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDG 605
Query: 557 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 610
+ I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 606 SENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 659
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 171/654 (26%), Positives = 278/654 (42%), Gaps = 82/654 (12%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 7 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 66
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 67 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 125
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 126 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 183
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 184 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 237
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDP--- 300
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 238 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFP 295
Query: 301 ---------------------SEGC---------------QDGTPVKTPNAVCIFERHAG 324
S GC + G P+ NAVCI E G
Sbjct: 296 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 355
Query: 325 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 384
++++H++ V LVV + T NY+Y + W F G+I++ + L+G+L
Sbjct: 356 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILN 414
Query: 385 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 444
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 415 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 470
Query: 445 NVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLP 499
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 471 -LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVS 529
Query: 500 GSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DG 556
+ E RA + +++V V PYK + Y G++V Q GD + +W DG
Sbjct: 530 TQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDG 589
Query: 557 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 610
+ I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 590 SENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 643
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 170/654 (25%), Positives = 277/654 (42%), Gaps = 82/654 (12%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 6 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 65
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 66 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 124
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 125 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 182
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 183 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 236
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDP--- 300
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 237 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFP 294
Query: 301 ---------------------SEGC---------------QDGTPVKTPNAVCIFERHAG 324
S GC + G P+ NAVCI E G
Sbjct: 295 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 354
Query: 325 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 384
++++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 355 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILN 413
Query: 385 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 444
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 414 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 469
Query: 445 NVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLP 499
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 470 -LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVS 528
Query: 500 GSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DG 556
+ E RA + +++V V PYK + Y G++V Q GD + +W DG
Sbjct: 529 TQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDG 588
Query: 557 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 610
+ I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 589 SENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 642
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 169/654 (25%), Positives = 276/654 (42%), Gaps = 82/654 (12%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 82
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 83 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 141
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 142 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 199
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 200 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 253
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDP--- 300
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +P P
Sbjct: 254 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPAGSPEFP 311
Query: 301 ---------------------SEGC---------------QDGTPVKTPNAVCIFERHAG 324
S GC + G P+ NAVCI E G
Sbjct: 312 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 371
Query: 325 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLE 384
++++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 372 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILN 430
Query: 385 VKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNT 444
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 431 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 486
Query: 445 NVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLP 499
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 487 -LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVS 545
Query: 500 GSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DG 556
+ E RA + +++V V PYK + Y G++V Q GD + +W DG
Sbjct: 546 TQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDG 605
Query: 557 NREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 610
+ I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 606 SENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 659
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 168/652 (25%), Positives = 275/652 (42%), Gaps = 82/652 (12%)
Query: 24 LDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--IVI 81
LD L +E VK+ + +SF+ V + EP + W PR A +++
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVIL 72
Query: 82 ARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL 141
E +VDL+ S++ + P+LT+E+ + ++ G+
Sbjct: 73 EAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSGI 131
Query: 142 ---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEM 196
+ V C T+G Y E+ KR+ + +Y + + P++ +VD EE
Sbjct: 132 PANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 189
Query: 197 KVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFKIN 245
KV + P + + ++++ + P P P +N T FK+
Sbjct: 190 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 243
Query: 246 GNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDP----- 300
GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 244 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFPHQ 301
Query: 301 -------------------SEGC---------------QDGTPVKTPNAVCIFERHAGDV 326
S GC + G P+ NAVCI E G +
Sbjct: 302 RKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-L 360
Query: 327 MWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVK 386
+++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 361 LFKHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNT- 419
Query: 387 PVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNV 446
Y D + GT V N A NH H + +D IDG NS + +
Sbjct: 420 ---YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP-L 475
Query: 447 NTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLPGS 501
+P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 476 GSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQ 535
Query: 502 IIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DGNR 558
+ E RA + +++V V PYK + Y G++V Q GD + +W DG+
Sbjct: 536 CPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSE 595
Query: 559 EIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 610
I+NTDI+ ++T GI H P EDFP+MP LRP +FF NP L + P
Sbjct: 596 NIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 167/652 (25%), Positives = 274/652 (42%), Gaps = 82/652 (12%)
Query: 24 LDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--IVI 81
LD L +E VK+ + +SF+ V + EP + W PR A +++
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVIL 72
Query: 82 ARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL 141
E +VDL+ S++ + P+LT+E+ + ++ G+
Sbjct: 73 EAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLSGI 131
Query: 142 ---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEM 196
+ V C T+G Y E+ KR+ + +Y + + P++ +VD EE
Sbjct: 132 PANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTEEK 189
Query: 197 KVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFKIN 245
KV + P + + ++++ + P P P +N T FK+
Sbjct: 190 KVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFKMT 243
Query: 246 GNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDP----- 300
GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +PY P
Sbjct: 244 GNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPYGSPEFPHQ 301
Query: 301 -------------------SEGC---------------QDGTPVKTPNAVCIFERHAGDV 326
S GC + G P+ NAVCI E G +
Sbjct: 302 RKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-L 360
Query: 327 MWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVK 386
+++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 361 LFKHSDFRDNFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNT- 419
Query: 387 PVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNV 446
Y D + GT V N A NH H + +D IDG NS + +
Sbjct: 420 ---YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP-L 475
Query: 447 NTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLLPGS 501
+P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 476 GSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQ 535
Query: 502 IIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-DGNR 558
+ E RA + +++V V PYK + Y G++V Q GD + +W DG+
Sbjct: 536 CPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSE 595
Query: 559 EIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIP 610
I+NTDI+ ++T GI H P EDFP+ P LRP +FF NP L + P
Sbjct: 596 NIDNTDILFFHTFGITHFPAPEDFPLXPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 169/656 (25%), Positives = 277/656 (42%), Gaps = 84/656 (12%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 9 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 68
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 69 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 127
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 128 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 185
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 186 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 239
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDP--- 300
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +P+ P
Sbjct: 240 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPFGSPEFP 297
Query: 301 ---------------------SEGC---------------QDGTPVKTPNAVCIFERHAG 324
S GC + G P+ NAVCI E G
Sbjct: 298 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 357
Query: 325 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNY-DYIIDWEFKPSGSIKMGVGLSGVL 383
++++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 358 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGIL 416
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 417 NT----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPY 472
Query: 444 TNVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLL 498
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 473 P-LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV 531
Query: 499 PGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-D 555
+ E RA + +++V V PYK + Y G++V Q GD + +W D
Sbjct: 532 STQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGD 591
Query: 556 GNREIENTDIVLWYTMGIHHAPCQEDFPV-MPTVSCGFELRPTNFFEYNPVLKVIP 610
G+ I+NTDI+ ++T GI H P EDFP+ MP LRP +FF NP L + P
Sbjct: 592 GSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 169/656 (25%), Positives = 277/656 (42%), Gaps = 84/656 (12%)
Query: 22 HPLDSLRPSEFTRVQTIVKTSYPSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRA--I 79
HPLD L +E VK+ + +SF+ V + EP + W PR A +
Sbjct: 6 HPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYV 65
Query: 80 VIARHNHQTHEIIVDLSKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKR 139
++ E +VDL+ S++ + P+LT+E+ + ++
Sbjct: 66 ILEAGKPGVKEGLVDLASLSVIETRALETVQ-PILTVEDLCSTEEVIRNDPAVIEQCVLS 124
Query: 140 GL---NISDVVCSASTVGWYGEK--KSKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIE 194
G+ + V C T+G Y E+ KR+ + +Y + + P++ +VD E
Sbjct: 125 GIPANEMHKVYCDPWTIG-YDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDTE 182
Query: 195 EMKVTEYNDREVAPIPKPEPTEYRLSKLKP-----------PFGPRLNSVATSSTRPGFK 243
E KV + P + + ++++ + P P P +N T FK
Sbjct: 183 EKKVIFID----IPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPIN--VTQPEGVSFK 236
Query: 244 INGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDP--- 300
+ GN ++W+N+ F++GF+ R G ++S S D R + +R +SE+ +P+ P
Sbjct: 237 MTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHG--NVRPIFHRISLSEMIVPFGSPEFP 294
Query: 301 ---------------------SEGC---------------QDGTPVKTPNAVCIFERHAG 324
S GC + G P+ NAVCI E G
Sbjct: 295 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG 354
Query: 325 DVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNY-DYIIDWEFKPSGSIKMGVGLSGVL 383
++++H++ V LVV + T N +Y + W F G+I++ + L+G+L
Sbjct: 355 -LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRLTGIL 413
Query: 384 EVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRN 443
Y D + GT V N A NH H + +D IDG NS +
Sbjct: 414 NT----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPY 469
Query: 444 TNVNTPRKSYWTV---EKETAKTEFEARLNLDTKP-MEFALVNPSKKTKI-GHPVGYRLL 498
+ +P Y EK T KT ++ N ++ + + NP+K G P Y+L+
Sbjct: 470 P-LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLV 528
Query: 499 PGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDT--LLQWT-D 555
+ E RA + +++V V PYK + Y G++V Q GD + +W D
Sbjct: 529 STQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGD 588
Query: 556 GNREIENTDIVLWYTMGIHHAPCQEDFPV-MPTVSCGFELRPTNFFEYNPVLKVIP 610
G+ I+NTDI+ ++T GI H P EDFP+ MP LRP +FF NP L + P
Sbjct: 589 GSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENPGLDIQP 644
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 188/413 (45%), Gaps = 63/413 (15%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQD 299
P F ++G+ + W W F V + T+ +IYDI+ K R V+YR +SE+ +PY D
Sbjct: 236 PSFNVDGHKISWQGWEFFV-----IPTVREGFAIYDIHF-KGRSVVYRLSLSEMTVPYGD 289
Query: 300 P------------------------SEGCQ---------------DGTPVKTPNAVCIFE 320
P + GC +G V PN VC+ E
Sbjct: 290 PRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHE 349
Query: 321 RHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLS 380
+ G ++++HT V R E VV+ +ATV N +Y+++ F +G I++ V +
Sbjct: 350 QDGG-LLYKHTNYRTNVPVIARRRE--FVVQTIATVANXEYMLNIIFDQAGEIRIHVRAT 406
Query: 381 GVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLV- 439
G+L P+ D+ GT V +A H H L++ +D +DGY N+ ++
Sbjct: 407 GILSTMPL-----DKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVFDDVIR 461
Query: 440 TRRNTNVNTPRKSYWTVEKETAKTEFEARLNLDTKPM---EFALVNPSKKTKIGH-PVGY 495
+NT +N + V T +T E ++ P + ++N +K I PV Y
Sbjct: 462 MEKNTKLNP-----YNVGFVTERTVVEKPGYVEQSPFTNRSYKIINENKINPISKKPVAY 516
Query: 496 RLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD 555
+++ + + ED Y RA F VWVT Y+ +E Y+ G + +QS D L W
Sbjct: 517 KIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQTDTGLGVWAR 576
Query: 556 GNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKV 608
+ + N + V+W T+G H P EDFPVMP + L P FF+ NP L V
Sbjct: 577 RDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALSV 629
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 143/307 (46%), Gaps = 16/307 (5%)
Query: 309 PVKTPNAVCIFERHAGDVMWRHTEAEMPGHVR---EVRPEVSLVVRMVATVGNYDYIIDW 365
PV P A+C+FE G + RH + G ++ +V LV+R +TV N DYI D+
Sbjct: 389 PVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQV-LVLRTTSTVYNXDYIWDF 447
Query: 366 EFKPSGSIKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLD 425
F P+G ++ + +G V YT + +HGT + + I H H ++Y +DLD
Sbjct: 448 IFYPNGVMEAKMHATGY--VHATFYT----PEGLRHGTRLHTHLIGNIHTHLVHYRVDLD 501
Query: 426 IDGYANSFEKTKLVTRRNTNVNTPRKSYW--TVEKETAKTEFEARLNLDTKPMEFALVNP 483
+ G NSF+ ++ TN +PR T+E+ E +A K ++ L
Sbjct: 502 VAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTS 561
Query: 484 SKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQ 543
++ GH YRL S+ +L + + Y + VT Y++SE S Y
Sbjct: 562 PQENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQN 621
Query: 544 SHGDDTLL--QWTDGNREIENTDIVLWYTMGIHHAPCQEDFP--VMPTVSCGFELRPTNF 599
D ++ Q+ N IEN D+V W T+G H P ED P P S GF LRP NF
Sbjct: 622 DPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNF 681
Query: 600 FEYNPVL 606
F +P L
Sbjct: 682 FPEDPSL 688
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/403 (25%), Positives = 165/403 (40%), Gaps = 46/403 (11%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVG-----------------TIISTASIYDIN----- 277
P F + G+ V + W F+ G A G ++ +IY N
Sbjct: 306 PRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAM 365
Query: 278 ----------MHKYRRVLYRGFISELFIPYQDPSEGCQDGTPVKTPNAVCIFERHAGDVM 327
M KY L RG Y D + P +A C+FE++ G +
Sbjct: 366 TTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPL 425
Query: 328 WRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKP 387
RH +++ H E LVVR ++T+ N DY+ D F PSG+I++ +G +
Sbjct: 426 RRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYATGYISSA- 483
Query: 388 VEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVN 447
+ + K +G V+++++ H H ++ +DLD+ G N +V
Sbjct: 484 --FLFGATGK---YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPW 538
Query: 448 TPRKSY--WTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGP 505
+P V ++ + E +A + + + + + K GHP GYR+ S G
Sbjct: 539 SPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGE 598
Query: 506 MLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD--GNREIENT 563
L ++ + Y + VT +K E+ S + +Q+ + ++D N I
Sbjct: 599 PLPQNSSMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGK 657
Query: 564 DIVLWYTMGIHHAPCQEDFPVMPTV--SCGFELRPTNFFEYNP 604
D+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 658 DLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 700
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 164/406 (40%), Gaps = 48/406 (11%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVG-----------------TIISTASIYDIN----- 277
P F + GN V + W F+ G A G ++ ++Y N
Sbjct: 304 PRFSVQGNRVASSLWTFSFGLGAFSGPRVFDVRFQGERLAYEISLQEAGAVYGGNTPAAM 363
Query: 278 ----------MHKYRRVLYRGFISELFIPYQDPSEGCQDGTPVKTPNAVCIFERHAGDVM 327
M + L RG Y D + TP +A C+FE++ G +
Sbjct: 364 LTRYMDSGFGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPL 423
Query: 328 WRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKP 387
RH ++ H + LV R V+T+ N DY+ D F P+G+I++ + +G +
Sbjct: 424 RRH-HSDFLSHYFGGVAQTVLVFRSVSTMLNXDYVWDMVFYPNGAIEVKLHATGYISSA- 481
Query: 388 VEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVN 447
+ + ++G V ++++ H H +Y +DLD+ G N +
Sbjct: 482 --FLFG---AARRYGNQVGEHTLGPVHTHSAHYKVDLDVGGLENWVWAEDMAFVPTAIPW 536
Query: 448 TPRKSY--WTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGP 505
+P V ++ +TE +A L + + + K GHP GYR+ S G
Sbjct: 537 SPEHQIQRLQVTRKQLETEEQAAFPLGGASPRYLYLASKQSNKWGHPRGYRIQTVSFAG- 595
Query: 506 MLMEDDYPQIRA-GFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD--GNREIEN 562
M + P RA + Y + +T K++E S + +Q+ + ++D N I
Sbjct: 596 GPMPQNSPMERAFSWGRYQLAITQRKETEP-SSSSVFNQNDPWTPTVDFSDFINNETIAG 654
Query: 563 TDIVLWYTMGIHHAPCQEDFPVMPTV--SCGFELRPTNFFEYNPVL 606
D+V W T G H P ED P TV GF LRP NFF+ P +
Sbjct: 655 KDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEPSM 700
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/403 (25%), Positives = 165/403 (40%), Gaps = 46/403 (11%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVG-----------------TIISTASIYDIN----- 277
P F + G+ V + W F+ G A G ++ +IY N
Sbjct: 321 PRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAM 380
Query: 278 ----------MHKYRRVLYRGFISELFIPYQDPSEGCQDGTPVKTPNAVCIFERHAGDVM 327
M KY L RG Y D + P +A C+FE++ G +
Sbjct: 381 TTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPL 440
Query: 328 WRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKP 387
RH +++ H E LVVR ++T+ N DY+ D F PSG+I++ +G +
Sbjct: 441 RRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYATGYISSA- 498
Query: 388 VEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVN 447
+ + K +G V+++++ H H ++ +DLD+ G N +V
Sbjct: 499 --FLFGATGK---YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPW 553
Query: 448 TPRKSY--WTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGP 505
+P V ++ + E +A + + + + + K GHP GYR+ S G
Sbjct: 554 SPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGE 613
Query: 506 MLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD--GNREIENT 563
L ++ + Y + VT +K E+ S + +Q+ + ++D N I
Sbjct: 614 PLPQNSSMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGK 672
Query: 564 DIVLWYTMGIHHAPCQEDFPVMPTV--SCGFELRPTNFFEYNP 604
D+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 673 DLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 715
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/403 (25%), Positives = 165/403 (40%), Gaps = 46/403 (11%)
Query: 240 PGFKINGNTVKWANWVFNVGFDARVG-----------------TIISTASIYDIN----- 277
P F + G+ V + W F+ G A G ++ +IY N
Sbjct: 293 PRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAM 352
Query: 278 ----------MHKYRRVLYRGFISELFIPYQDPSEGCQDGTPVKTPNAVCIFERHAGDVM 327
M KY L RG Y D + P +A C+FE++ G +
Sbjct: 353 TTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPL 412
Query: 328 WRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKP 387
RH +++ H E LVVR ++T+ N DY+ D F PSG+I++ +G +
Sbjct: 413 RRH-HSDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIRFYATGYISSA- 470
Query: 388 VEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVN 447
+ + K +G V+++++ H H ++ +DLD+ G N +V
Sbjct: 471 --FLFGATGK---YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPW 525
Query: 448 TPRKSY--WTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGP 505
+P V ++ + E +A + + + + + K GHP GYR+ S G
Sbjct: 526 SPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGE 585
Query: 506 MLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTD--GNREIENT 563
L ++ + Y + VT +K E+ S + +Q+ + ++D N I
Sbjct: 586 PLPQNSSMARGFSWERYQLAVT-QRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGK 644
Query: 564 DIVLWYTMGIHHAPCQEDFPVMPTV--SCGFELRPTNFFEYNP 604
D+V W T G H P ED P TV GF LRP NFF+ +P
Sbjct: 645 DLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 687
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 131/303 (43%), Gaps = 18/303 (5%)
Query: 314 NAVCIFERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSI 373
+++C+FE A M RH+ +E V V +R V+T+GN DY+ + F G+I
Sbjct: 443 DSLCLFEFDADYPMARHSTSEF----VSVTKNVYFTLRSVSTIGNXDYMFSYNFHMDGTI 498
Query: 374 KMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSF 433
+ V SG ++ Y +Q G + D+ HDH LN+ D DI G N+
Sbjct: 499 GVEVRASGYIQSA---YYANNQ----DFGYQIHDSLSGSMHDHVLNFKADFDILGPNNTI 551
Query: 434 EKTKL--VTRRNTNVNTPRKSYWTVEKETAKTEFEARLNLD-TKPMEFALVNPSKKTKIG 490
E + VT++ + ++ + + +E EARLN + +VN K K G
Sbjct: 552 ELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFG 611
Query: 491 HPVGYRLLPGSIIGPMLMEDDYPQIRAG-FTNYNVWVTPYKKSEKYSGGNYVDQS-HGDD 548
P GYR+LP + + + + + A + Y+V VT E S Y Q H
Sbjct: 612 EPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPTSAHPYNSQDIHNPP 671
Query: 549 TLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFP--VMPTVSCGFELRPTNFFEYNPVL 606
+ TD+V+W +G+HH P D P V T G P N+ +P
Sbjct: 672 VDFSTFFNGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSR 731
Query: 607 KVI 609
+ +
Sbjct: 732 ETV 734
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 36/304 (11%)
Query: 315 AVCIFERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIK 374
+ C+FE + RHT A + +L VR ++T+GN DY ++F G+++
Sbjct: 398 SYCVFENQEDYSLLRHTGASYSA----ITQNPTLNVRFISTIGNXDYNFLYKFFLDGTLE 453
Query: 375 MGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFE 434
+ V +G ++ Y + +G + D HDH LNY +DLD+ G N
Sbjct: 454 VSVRAAGYIQAG-----YWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKN--- 505
Query: 435 KTKLVTRRNTNVN---TPRKSYWTVEKETAKTEFEAR----LNLDTKPMEFALVNPSKKT 487
+ ++ +V P Y T K+ A+ FE +N L+ +++T
Sbjct: 506 RASQYVMKDVDVEYPWAPGTVYNT--KQIAREVFENEDFNGINWPENGQGILLIESAEET 563
Query: 488 K-IGHPVGYRLLPGSIIGPMLMEDDY--PQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQS 544
G+P Y ++PG ++++ P+ + + N+++T +K +E S +
Sbjct: 564 NSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQ-NWARSNLFLTKHKDTELRSSTALNTNA 622
Query: 545 HGD-----DTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFP--VMPTVSCGFELRPT 597
D + L + ++ DIV W +G+HH P D P + T F L P
Sbjct: 623 LYDPPVNFNAFLD----DESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPF 678
Query: 598 NFFE 601
N+F+
Sbjct: 679 NYFD 682
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 130/302 (43%), Gaps = 32/302 (10%)
Query: 315 AVCIFERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSIK 374
+ C+FE + RHT A + +L VR ++T+GN DY ++F G+++
Sbjct: 438 SYCVFENQEDYSLLRHTGASYSA----ITQNPTLNVRFISTIGNXDYNFLYKFFLDGTLE 493
Query: 375 MGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFE 434
+ V +G ++ Y + +G + D HDH LNY +DLD+ G N
Sbjct: 494 VSVRAAGYIQAG-----YWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRAS 548
Query: 435 KTKLVTRRNTNVN---TPRKSYWT--VEKETAKTEFEARLNLDTKPMEFALVNPSKKTK- 488
K + ++ +V P Y T + +E + E +N L+ +++T
Sbjct: 549 KYVM---KDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNS 605
Query: 489 IGHPVGYRLLPGSIIGPMLMEDDY--PQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHG 546
G+P Y ++PG ++++ P+ + + N+++T +K E S +
Sbjct: 606 FGNPRAYNIMPGGGGVHRIVKNSRSGPETQ-NWARSNLFLTKHKDEELRSSTALNTNALY 664
Query: 547 D-----DTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFP--VMPTVSCGFELRPTNF 599
D + L + ++ DIV W +G+HH P D P + T F L P N+
Sbjct: 665 DPPVNFNAFLD----DESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNY 720
Query: 600 FE 601
F+
Sbjct: 721 FD 722
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 260 FDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGCQDGTPVKTPNAVCIF 319
F GT T + + + R + GF+ + + PS+ C+ V+ N +C+
Sbjct: 50 FQLITGTEPDTIEASNFQLDRKTRFIIHGFLDKAEDSW--PSDMCKKMFEVEKVNCICVD 107
Query: 320 ERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNY 359
RH M+ T+A ++R V E + +++ ++T Y
Sbjct: 108 WRHGSRAMY--TQAVQ--NIRVVGAETAFLIQALSTQLGY 143
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 260 FDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEGCQDGTPVKTPNAVCIF 319
F GT T + + + R + GF+ + + PS+ C+ V+ N +C+
Sbjct: 52 FQLITGTEPDTIEASNFQLDRKTRFIIHGFLDKAEDSW--PSDMCKKMFEVEKVNCICVD 109
Query: 320 ERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNY 359
RH M+ T+A ++R V E + +++ ++T Y
Sbjct: 110 WRHGSRAMY--TQAVQ--NIRVVGAETAFLIQALSTQLGY 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,356,449
Number of Sequences: 62578
Number of extensions: 911641
Number of successful extensions: 1963
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 67
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)