Query 006970
Match_columns 623
No_of_seqs 144 out of 725
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 17:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 3E-173 6E-178 1444.3 68.5 583 21-620 13-643 (647)
2 COG3733 TynA Cu2+-containing a 100.0 8E-171 2E-175 1352.4 56.6 577 21-612 29-653 (654)
3 PLN02566 amine oxidase (copper 100.0 2E-169 4E-174 1413.2 66.6 577 21-607 21-646 (646)
4 PRK14696 tynA tyramine oxidase 100.0 5E-168 1E-172 1413.1 66.9 577 21-612 87-720 (721)
5 KOG1186 Copper amine oxidase [ 100.0 4E-145 9E-150 1188.6 50.8 607 5-623 9-667 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 8E-124 2E-128 1008.6 33.5 367 232-613 1-413 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 1.3E-23 2.7E-28 187.1 9.4 98 112-210 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.8 3.3E-20 7.1E-25 160.6 3.2 83 22-105 1-85 (86)
9 PF04270 Strep_his_triad: Stre 44.7 12 0.00026 29.9 1.2 27 15-41 25-52 (53)
10 PF02728 Cu_amine_oxidN3: Copp 42.7 8.1 0.00017 34.4 -0.0 78 26-105 2-93 (101)
11 PF11148 DUF2922: Protein of u 24.0 86 0.0019 25.9 3.1 24 21-44 20-43 (69)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=2.7e-173 Score=1444.28 Aligned_cols=583 Identities=35% Similarity=0.602 Sum_probs=549.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCeEEEEEEccCCChHHhhhhhccCCCCCCcEEEEEEEe--CCeEEEEEEECCC
Q 006970 21 RHPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRAIVIARH--NHQTHEIIVDLSK 97 (623)
Q Consensus 21 ~HPldpLs~~Ei~~a~~il~~~~~-~~~~~f~~i~L~EP~K~~vl~~l~~~~~~p~R~A~vv~~~--~~~~~e~vV~L~~ 97 (623)
+|||||||++||++|++|||++.+ +..++|.+|+|.||+|++|++|+.+++ ++|+|+|++++ +++++|++|||++
T Consensus 13 ~HPLdpLt~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~g~~--~~R~a~v~~~~~~~~~~~e~vVdL~~ 90 (647)
T PRK11504 13 SHPLDPLTAAEIEAAVAILRAEGLLGESTRFVSIELAEPPKAEVLAFDPGDP--IDRRAFVVLYDRATGKTYEAVVSLTA 90 (647)
T ss_pred CCCCCCCCHHHHHHHHHHHHhccccCCceEEEEeeccCCCHHHHHhhhcCCC--CCcEEEEEEEECCCCcEEEEEEECCC
Confidence 799999999999999999999985 688999999999999999999999765 58999999996 6779999999999
Q ss_pred CeEEEEEeecCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCC-C-CeeEEEEEEEEeeC
Q 006970 98 RSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL-NISDVVCSASTVGWYGEK-K-SKRVLKFPCFYTDQ 174 (623)
Q Consensus 98 ~~v~~~~~~~~~~~p~i~~~E~~~~e~~~~~~p~~~~a~~~~gi-d~~~v~~d~w~~G~~~~~-~-~rRl~~~~~~~r~~ 174 (623)
++|++++.++ ++||+++.+|+.+||++|++||+|+++|++||| ++++|+||||++||++.. + +|||+||+||+|.+
T Consensus 91 ~~V~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~Rl~~~~~~~r~~ 169 (647)
T PRK11504 91 GEVVSWEEIP-GVQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEERGRRLARGLAFVRAD 169 (647)
T ss_pred CEEEEEEECC-CccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcCCceEEEEEEEEecC
Confidence 9999999887 679999999999999999999999999999999 589999999999988763 3 59999999999988
Q ss_pred CCCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-cCCeEEEeceEEEeec
Q 006970 175 GTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-TRPGFKINGNTVKWAN 253 (623)
Q Consensus 175 ~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i~q-eG~sf~v~g~~V~W~~ 253 (623)
+++|+||||||||.++||+++|||++|+|.+..|+|+.. .+|+++++. ++|+++||++|+| ||+||+|+|++|+|||
T Consensus 170 ~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v~g~~V~W~~ 247 (647)
T PRK11504 170 PGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTVDGNEVEWQK 247 (647)
T ss_pred CCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEEcCCEEEECC
Confidence 899999999999999999999999999999888888776 699988765 6899999999999 9999999999999999
Q ss_pred eEEEEEecCCcceeEEeeEEecCCCCeEeEEEeeeceeeeeeccCCCCCC--------------------------C---
Q 006970 254 WVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG--------------------------C--- 304 (623)
Q Consensus 254 W~f~~gf~~reGl~L~dv~~~d~~~~~~r~V~yr~Sl~Em~VpY~dp~~~--------------------------C--- 304 (623)
|+||+|||+||||+||||+|+| .|+.|||+||+|||||+||||||+++ |
T Consensus 248 W~f~vgf~~reGlvL~dv~y~d--~g~~R~v~YrlslsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg~ 325 (647)
T PRK11504 248 WSFRVGFNPREGLVLHQVSYDD--GGRERPILYRASLSEMVVPYGDPSPTHYWKNAFDAGEYGLGRLANSLELGCDCLGE 325 (647)
T ss_pred cEEEEecCCCCceEEEEEEEcC--CCCcceEEEEeeeeeeeeecCCCCcchhhceeeeccccCCcccccccccCCCCCCC
Confidence 9999999999999999999999 67889999999999999999999987 5
Q ss_pred ----------CCCccEEecceEEEeeecCCCceeeeeecCCCCe-eeecccceEEEEEEEEEeeccceEEEEEEccCccE
Q 006970 305 ----------QDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGH-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSI 373 (623)
Q Consensus 305 ----------~~G~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-v~~~r~~~~LVvr~i~TVgNYdYi~~w~F~qDGtI 373 (623)
.+|+|++++|||||||+| +|+||||++++++.. ++|+| +||||+|+|||||||||+|+|||||+|
T Consensus 326 i~Y~D~~~~~~~G~p~~~~naICihE~D-~GilwkHt~~r~~~~~v~r~r---~LVvr~I~TVgNYdYi~~w~F~qdG~I 401 (647)
T PRK11504 326 IRYFDAVLADSDGEPYTIKNAICMHEED-YGILWKHTDFRTGSAEVRRSR---RLVISFFATVGNYDYGFYWYFYQDGTI 401 (647)
T ss_pred CEEcceEEecCCCCeEEecCEEEEeeec-CCeeeeeeccCCCcEEEEecc---EEEEEEEEecccccEEEEEEEecCceE
Confidence 679999999999999999 789999999997766 66666 999999999999999999999999999
Q ss_pred EEEEEEeeeeeeeeecccccCccccCCccceecCCccccccceeEEeeeeccCCCCCCceEEEEEEEecCCCCCCCccee
Q 006970 374 KMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKSY 453 (623)
Q Consensus 374 e~~v~aTG~l~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~p~~~~ 453 (623)
|++|+|||||+|++.. ++++.+||++|+|+++|++|||+|||||||||||.+|||+++|+++++.. ++||++++
T Consensus 402 e~eV~aTGil~t~~~~-----~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~-~~np~g~~ 475 (647)
T PRK11504 402 EFEVKLTGIVFTAAVP-----PGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVPVPMG-PDNPHGNA 475 (647)
T ss_pred EEEEEeeeEEEeeeeC-----CCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEecCCC-CCCccceE
Confidence 9999999999987542 12356899999999999999999999999999999999999999999876 58999999
Q ss_pred EEEEEEeecchhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCCcccCCCCCCChhccccccceeeeEEeecCCC
Q 006970 454 WTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKS 532 (623)
Q Consensus 454 ~~~~~~~l~tE~~a~~~~~~-~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~~ 532 (623)
|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|++++.+|++++|+..+||+||+|+||||+|+++
T Consensus 476 ~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~ 555 (647)
T PRK11504 476 FYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGFATHHLWVTPYDPD 555 (647)
T ss_pred EEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchhhhCcEEEeccCCC
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCccCCCCCCChhccccCCCceeeCCeEEEEEeccccCCCCCCCCcccceeeeeEEEecCCCCCCCCCCCCCCC
Q 006970 533 EKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIPPK 612 (623)
Q Consensus 533 E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~~ 612 (623)
|+||||+|+||+.+++||++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+||+||+.
T Consensus 556 E~~aag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaldvp~s~ 635 (647)
T PRK11504 556 ERYAAGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGFFDRNPALDLPPEP 635 (647)
T ss_pred ccccCCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCCCCCCccccCCCcc
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCC
Q 006970 613 HVQRPNYT 620 (623)
Q Consensus 613 ~~~~~~~~ 620 (623)
+..+|.+.
T Consensus 636 ~~~~~~~~ 643 (647)
T PRK11504 636 PAACHEHG 643 (647)
T ss_pred cccccccC
Confidence 86655543
No 2
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.2e-171 Score=1352.40 Aligned_cols=577 Identities=33% Similarity=0.620 Sum_probs=542.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCeEEEEEEccCCChHHhhhhhccCCCCCCcEEEEEEEe--CCeEEEEEEECCC
Q 006970 21 RHPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRAIVIARH--NHQTHEIIVDLSK 97 (623)
Q Consensus 21 ~HPldpLs~~Ei~~a~~il~~~~~-~~~~~f~~i~L~EP~K~~vl~~l~~~~~~p~R~A~vv~~~--~~~~~e~vV~L~~ 97 (623)
+|||||||++||++|++|||++.. .+.+.|.+|+|.||+|++|++|...+. +++|.|+++++. +.+.+|++|||++
T Consensus 29 shPLdpLt~~Eik~aVEivr~e~~~~~~~~F~~VtL~eP~K~~v~~f~~~~~-~ieR~a~~~~~~~~~~~i~EavV~L~~ 107 (654)
T COG3733 29 SHPLDPLTADEIKQAVEIVRAEADFKKNFAFTEVTLLEPDKQEVLAFRLENK-PIERKALAVVYELDGKGIYEAVVDLDN 107 (654)
T ss_pred CCCCCccCHHHHHHHHHHHHhhcccCCceeeEEEEecCCchHHHHHHHhcCC-CcchhhhhheeeccCCceEEEEEEccc
Confidence 699999999999999999999875 468999999999999999999987532 589999999987 7889999999999
Q ss_pred CeEEEEEeecCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCC--CCCeeEEEEEEEEeeC
Q 006970 98 RSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL-NISDVVCSASTVGWYGE--KKSKRVLKFPCFYTDQ 174 (623)
Q Consensus 98 ~~v~~~~~~~~~~~p~i~~~E~~~~e~~~~~~p~~~~a~~~~gi-d~~~v~~d~w~~G~~~~--~~~rRl~~~~~~~r~~ 174 (623)
.+|.+|+.++ +++|+|+.+||..||.++++||+|+|||++||| |+++|+||||+.|+++. .++||+++.+||+|+.
T Consensus 108 nkv~~~q~i~-~a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~~grr~~~~~m~yr~~ 186 (654)
T COG3733 108 NKVLSWQPIK-DAHPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGLKGRRRALKVMWYRDV 186 (654)
T ss_pred ceeeeeEecc-ccCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCccccccceeEEEEEEEEec
Confidence 9999999887 579999999999999999999999999999999 89999999999999864 4679999999999988
Q ss_pred CCCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-cCCeEEEeceEEEeec
Q 006970 175 GTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-TRPGFKINGNTVKWAN 253 (623)
Q Consensus 175 ~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i~q-eG~sf~v~g~~V~W~~ 253 (623)
+++|+|+|||+||.++||++++||++|+|++++|+|+. ..+|..+.++ +.+.++||++|.| ||+||+|+|++|+||+
T Consensus 187 e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~-~~ny~~e~i~-~~~~~~KpiqI~QPeg~sf~i~G~~i~W~~ 264 (654)
T COG3733 187 EDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMK-RANYGRERIG-KALGPVKPIQIIQPEGKSFTITGDEISWQN 264 (654)
T ss_pred CCCCcccccccceeeEEEcccCeEEEecCCCccccccc-ccCcCHHHhh-hhcCCCCCceeecCCCceEEEecCEEEEee
Confidence 89999999999999999999999999999999999984 4688776554 3455699999999 9999999999999999
Q ss_pred eEEEEEecCCcceeEEeeEEecCCCCeEeEEEeeeceeeeeeccCCCCCC-------------------------C----
Q 006970 254 WVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG-------------------------C---- 304 (623)
Q Consensus 254 W~f~~gf~~reGl~L~dv~~~d~~~~~~r~V~yr~Sl~Em~VpY~dp~~~-------------------------C---- 304 (623)
|+||+|||+||||+|+||+|+| +|..|+|+||+||+||+||||||+++ |
T Consensus 265 w~frig~n~ReGlvl~dVsY~D--~g~~Rpv~YraSl~eMvVPYGdPd~~h~~K~~fD~GeYglG~l~~plalGdc~g~~ 342 (654)
T COG3733 265 WRFRIGMNPREGLVLSDVSYND--NGNKRPVLYRASLVEMVVPYGDPDPGHYFKNAFDSGEYGLGTLTSPLALGDCAGSN 342 (654)
T ss_pred eeEEEeccccCCeEEEEEEEcC--CCccceEEEEeeecceeeecCCCCcchhhhhcccccccCccccccchhhcccccce
Confidence 9999999999999999999999 78899999999999999999999998 6
Q ss_pred ----------CCCccEEecceEEEeeecCCCceeeeeecCCCCe-eeecccceEEEEEEEEEeeccceEEEEEEccCccE
Q 006970 305 ----------QDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGH-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSI 373 (623)
Q Consensus 305 ----------~~G~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-v~~~r~~~~LVvr~i~TVgNYdYi~~w~F~qDGtI 373 (623)
..|+|++++|||||||+| .|+||||+|+|+++. ++|.| .||||+|+|||||||+|+|+|||||+|
T Consensus 343 i~~lDa~~a~~tG~p~~i~~AIcIhEed-~GvlwKH~d~rs~~~~trr~r---~LVVs~i~Tv~NYdYg~~WifhqDGtI 418 (654)
T COG3733 343 IVLLDATFANYTGEPMTIPNAICIHEED-AGVLWKHQDFRSPNVETRRAR---GLVVSWIATVANYDYGFYWIFHQDGTI 418 (654)
T ss_pred eEEEeeeeeccCCceEEecceeEEEecc-ccceeeehhhcCCccceeecc---ceEEEEEEeecccceeEEEEEEcCceE
Confidence 779999999999999999 789999999999887 77777 899999999999999999999999999
Q ss_pred EEEEEEeeeeeeeeecccccCccccCCccceecCCccccccceeEEeeeeccCCCCCCceEEEEEEEecCCCCCCCccee
Q 006970 374 KMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPRKSY 453 (623)
Q Consensus 374 e~~v~aTG~l~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~p~~~~ 453 (623)
|++++||||++|++.+.. + ....|||+|.|++.|++||||||+||||||||.+|||+++|+...|.+ ..||+||+
T Consensus 419 e~e~klTGIin~~a~~e~---~-p~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~~~P~~-~~np~gNa 493 (654)
T COG3733 419 EFEAKLTGIINTKAIAEG---Q-PDPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVVGAPIT-KGNPYGNA 493 (654)
T ss_pred EEeecceeEEEeehhcCC---C-CCCCccceeccccccccceeEEEeeecccccCcccceEEEEcccCCCC-CCCCccce
Confidence 999999999999865322 1 124499999999999999999999999999999999999998777653 37999999
Q ss_pred EEEEEEeecchhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCCcccCCCCCCChhccccccceeeeEEeecCCC
Q 006970 454 WTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKKS 532 (623)
Q Consensus 454 ~~~~~~~l~tE~~a~~~~~~-~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~~ 532 (623)
|+++++++++|++|.+++|+ +.|+|+|+|++|+|..|+|+||||+|+.+..+++.++|.+.+|++||+||||||+|++.
T Consensus 494 f~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~Fa~~hlwVT~y~p~ 573 (654)
T COG3733 494 FQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAGFATKHLWVTPYHPG 573 (654)
T ss_pred EEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhhhccceEEEeccCcc
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCccCCCCCCChhccccCCCceeeCCeEEEEEeccccCCCCCCCCcccceeeeeEEEecCCCCCCCCCCCCCCC
Q 006970 533 EKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLKVIPPK 612 (623)
Q Consensus 533 E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvp~~~ 612 (623)
|+||+|+|+||+.+++||++|+++||||+|||||+|||||+||+||+|||||||+++.||+|+|+|||++||+|++|++.
T Consensus 574 ErYp~GdYpnq~~~~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rpED~PvMP~e~~gf~L~P~gFFd~nPai~lp~~~ 653 (654)
T COG3733 574 ERYPAGDYPNQSAGGKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRPEDWPVMPVEWAGFLLKPRGFFDRNPAIDLPRKD 653 (654)
T ss_pred cccCCCCCCCCCCCCCChhhhhhccccccCcceEEEEecCceeccCcccCCccccchhceEeccccccccCcccCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=1.8e-169 Score=1413.20 Aligned_cols=577 Identities=57% Similarity=1.008 Sum_probs=536.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCC--CCeEEEEEEccCCChHHhhhhhccCC---CCCCcEEEEEEEeCCeEEEEEEEC
Q 006970 21 RHPLDSLRPSEFTRVQTIVKTSYPS--NNLSFHYVGMDEPDKAVVYSWLSNSK---TKFPRRAIVIARHNHQTHEIIVDL 95 (623)
Q Consensus 21 ~HPldpLs~~Ei~~a~~il~~~~~~--~~~~f~~i~L~EP~K~~vl~~l~~~~---~~p~R~A~vv~~~~~~~~e~vV~L 95 (623)
.|||||||++||++|++|||++.+. ..++|.+|+|.||+|++|++|+.++. +.|+|+|+|++..+++++|++|||
T Consensus 21 ~HPLdpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~R~a~v~~~~~~~~~e~vVdl 100 (646)
T PLN02566 21 YHPLDPLNPQEINKIRLIVQKSHLGNLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPPRRAKVVVRAGGETYELIVDL 100 (646)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCCceEEEEEEccCCChHHHHhhhhcccCCCCCCCcEEEEEEecCCCEEEEEEEC
Confidence 6999999999999999999999753 47999999999999999999998764 246899998775678899999999
Q ss_pred CCCeEEEEEeecCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCCCCCceEEccccccccCCCCCeeEEEEEEEEeeCC
Q 006970 96 SKRSIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGLNISDVVCSASTVGWYGEKKSKRVLKFPCFYTDQG 175 (623)
Q Consensus 96 ~~~~v~~~~~~~~~~~p~i~~~E~~~~e~~~~~~p~~~~a~~~~gid~~~v~~d~w~~G~~~~~~~rRl~~~~~~~r~~~ 175 (623)
++++|++++.+++.|||+++.+|+.+||++|++||+|+|+|++|||+.++|+||||++||++..++||++|++||+| ++
T Consensus 101 ~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~~~~~~~~R~~q~~~y~r-~~ 179 (646)
T PLN02566 101 ATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWYGETVTKRALKISCFYR-GG 179 (646)
T ss_pred CCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCcccccCCCCCCcEEEEEEEEEc-CC
Confidence 99999999998877799999999999999999999999999999998888999999999887755799999999999 88
Q ss_pred CCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-c-CCeEEEeceEEEeec
Q 006970 176 TINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-T-RPGFKINGNTVKWAN 253 (623)
Q Consensus 176 ~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i~q-e-G~sf~v~g~~V~W~~ 253 (623)
++|+||||||||.++||++++||++|+|.+..|+|+..+. ++|+++||+.|+| | |+||+|+|++|+|||
T Consensus 180 ~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~---------~~R~d~kPl~i~QPegG~sF~v~G~~V~W~~ 250 (646)
T PLN02566 180 SVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGT---------DFRTKHKPFSFPCNVSDSGFTILGHRVKWAN 250 (646)
T ss_pred CcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCC---------CCCcCCCCccccCCCCCCcEEEcCCEEEecC
Confidence 9999999999999999999999999999865677665431 3699999999999 9 599999999999999
Q ss_pred eEEEEEecCCcceeEEeeEEecCCCCeEeEEEeeeceeeeeeccCCCCCC--------------------------C---
Q 006970 254 WVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG--------------------------C--- 304 (623)
Q Consensus 254 W~f~~gf~~reGl~L~dv~~~d~~~~~~r~V~yr~Sl~Em~VpY~dp~~~--------------------------C--- 304 (623)
|+||||||+||||+||||+|+|+++++.||||||+|||||+||||||+++ |
T Consensus 251 W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~ 330 (646)
T PLN02566 251 WDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETFVPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCPAN 330 (646)
T ss_pred cEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeEEecCCCCccccccceeeccccCccccccccccCCCCCCC
Confidence 99999999999999999999999988889999999999999999999987 5
Q ss_pred ----------CCCccEEecceEEEeeecCCCceeeeeecCCCCe-eeecccceEEEEEEEEEeeccceEEEEEEccCccE
Q 006970 305 ----------QDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGH-VREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSI 373 (623)
Q Consensus 305 ----------~~G~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-v~~~r~~~~LVvr~i~TVgNYdYi~~w~F~qDGtI 373 (623)
.+|+|++++|||||||+|+|||||||++++..+. ++.+++.++||||+|+|||||||+|+|+|||||+|
T Consensus 331 i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~~~~~~r~g~~~~~LVvr~I~TVgNYDYif~w~F~qdGtI 410 (646)
T PLN02566 331 AVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINVPGRVIRSGEPEISLVVRMVATLGNYDYILDWEFKKSGSI 410 (646)
T ss_pred cEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCCCccccccCcceEEEEEEEEEEeecccEEEEEEEecCceE
Confidence 7799999999999999998799999999976655 56678888999999999999999999999999999
Q ss_pred EEEEEEeeeeeeeeecccccCccccCCccceecCCccccccceeEEeeeeccCCCCCCceEEEEEEEecCCC--CCCCcc
Q 006970 374 KMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTN--VNTPRK 451 (623)
Q Consensus 374 e~~v~aTG~l~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~--~~~p~~ 451 (623)
|+||+|||||+|+++.+..+.+.+..+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++... ++||++
T Consensus 411 e~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~~np~g 490 (646)
T PLN02566 411 KVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVKAKLQTARVTAVNASSPRK 490 (646)
T ss_pred EEEEEeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEEEeeEEccCCCCCCCCCCc
Confidence 999999999999887654322222368999999999999999999999999999999999999999976543 689999
Q ss_pred eeEEEEEEeecchhhhhhcCCCCCcEEEEeCCCCCCCCCCceeEEEccCCcccCCCCCCChhccccccceeeeEEeecCC
Q 006970 452 SYWTVEKETAKTEFEARLNLDTKPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDYPQIRAGFTNYNVWVTPYKK 531 (623)
Q Consensus 452 ~~~~~~~~~l~tE~~a~~~~~~~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~ 531 (623)
++|+++++++++|++|+++++...|.|+|+|++++|++|+|+||||+|++++.++++++|+..+||+||+|+||||+|+|
T Consensus 491 ~~~~~~~~~~~tE~~a~~~~~~~~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d 570 (646)
T PLN02566 491 SYWTVVKETAKTEAEGRIRLGSEPAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVTAYNK 570 (646)
T ss_pred ceEEEEEEEecchhhhhhccCCCCceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEecCCC
Confidence 99999999999999999999994477999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCccCCCCCCChhccccCCCceeeCCeEEEEEeccccCCCCCCCCcccceeeeeEEEecCCCCCCCCCC
Q 006970 532 SEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYNPVLK 607 (623)
Q Consensus 532 ~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld 607 (623)
+|+||||.|++|+++++||++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+|.
T Consensus 571 ~E~~aag~y~~qs~g~~gl~~w~~~~~~I~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaL~ 646 (646)
T PLN02566 571 SERWAGGFYADRSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPLLR 646 (646)
T ss_pred cccCCCCcCccCCCCCCChhhhhcCCCcccCCceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999983
No 4
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=4.8e-168 Score=1413.10 Aligned_cols=577 Identities=32% Similarity=0.597 Sum_probs=533.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCeEEEEEEccCCChHHhhhhhccCCC-CCCcEEEEEEEeCCeEEEEEEECCCC
Q 006970 21 RHPLDSLRPSEFTRVQTIVKTSYP-SNNLSFHYVGMDEPDKAVVYSWLSNSKT-KFPRRAIVIARHNHQTHEIIVDLSKR 98 (623)
Q Consensus 21 ~HPldpLs~~Ei~~a~~il~~~~~-~~~~~f~~i~L~EP~K~~vl~~l~~~~~-~p~R~A~vv~~~~~~~~e~vV~L~~~ 98 (623)
+|||||||++||++|++||+++.+ ..+++|.+|+|.||+|++|++|+.++.+ +|+|+|+|+++.+++++|++|||+++
T Consensus 87 ~HPLdpLt~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~R~A~v~~~~~~~~~e~vVdL~~~ 166 (721)
T PRK14696 87 PHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLKEPDKEAVWAFALENKPVDQPRKADVIMLDGKHVIEAVVDLQNN 166 (721)
T ss_pred CCCCCCCCHHHHHHHHHHHHhccccCCceEEEEEEecCCCcHHHHHHHhcCCCCCCCcEEEEEEEeCCCEEEEEEECCCC
Confidence 699999999999999999999975 5679999999999999999999986333 37899999999888899999999999
Q ss_pred eEEEEEeecCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCC----CCeeEEEEEEEEee
Q 006970 99 SIVSDKVYTGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGL-NISDVVCSASTVGWYGEK----KSKRVLKFPCFYTD 173 (623)
Q Consensus 99 ~v~~~~~~~~~~~p~i~~~E~~~~e~~~~~~p~~~~a~~~~gi-d~~~v~~d~w~~G~~~~~----~~rRl~~~~~~~r~ 173 (623)
+|++|+.++ ++||+++.+|+.+||++|++||+|+++|++||| ++++|+||||++||++.. ++||++||+||++
T Consensus 167 ~v~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~~- 244 (721)
T PRK14696 167 KVLSWQPIK-DAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPLTVGYFDGKDGLKQDARLLKVVSYLD- 244 (721)
T ss_pred EEEEEEeCC-CccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCccccccCCcCccccCceEEEEEEEEc-
Confidence 999999887 579999999999999999999999999999999 799999999999988763 3699999999999
Q ss_pred CCCCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCceeec-cCCeEEEeceEEEee
Q 006970 174 QGTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVATSS-TRPGFKINGNTVKWA 252 (623)
Q Consensus 174 ~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i~q-eG~sf~v~g~~V~W~ 252 (623)
++++|+||||||||+++||++++||++|+|.+..+.|... .+|+++. ++|+++||++|+| ||+||+|+|++|+||
T Consensus 245 ~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~-~~Y~~~~---~~r~~lKPl~i~QPeG~sF~v~G~~V~W~ 320 (721)
T PRK14696 245 VGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA-RPYDGRD---RVAPAVKPLQIIEPEGKNYTITGDTIHWR 320 (721)
T ss_pred CCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-cCCCccc---cccCCCCCceeeCCCCCCEEEcCCeEEEC
Confidence 8899999999999999999999999999998875555544 5998875 4799999999999 999999999999999
Q ss_pred ceEEEEEecCCcceeEEeeEEecCCCCeEeEEEeeeceeeeeeccCCCCCC--------------------------C--
Q 006970 253 NWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG--------------------------C-- 304 (623)
Q Consensus 253 ~W~f~~gf~~reGl~L~dv~~~d~~~~~~r~V~yr~Sl~Em~VpY~dp~~~--------------------------C-- 304 (623)
||+||+|||+||||+||||+|+| .|+.||||||+|||||+||||||+++ |
T Consensus 321 ~W~f~vgf~~ReGlvL~dv~y~d--~g~~R~v~YrlSlsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCpg 398 (721)
T PRK14696 321 NWDFHLSLDSRVGPMLSTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPS 398 (721)
T ss_pred CcEEEEecCCCcceEEEEEEEcC--CCcceeEEEEeeeeeEEEeCCCCCchhhhceeeeccccCCcccccccccCCCCCC
Confidence 99999999999999999999999 67889999999999999999999996 5
Q ss_pred -----------CCCccEEecceEEEeeecCCCceeeeeecCCCCeeeecccceEEEEEEEEEeeccceEEEEEEccCccE
Q 006970 305 -----------QDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGHVREVRPEVSLVVRMVATVGNYDYIIDWEFKPSGSI 373 (623)
Q Consensus 305 -----------~~G~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~v~~~r~~~~LVvr~i~TVgNYdYi~~w~F~qDGtI 373 (623)
.+|+|++++|||||||+| .|++|||++++.+..++|+| +||||+|+|||||||+|+|+|||||+|
T Consensus 399 ~i~Y~D~~~~~~~G~p~~~~NaICihE~D-~G~~wkHt~~~~~~~~~r~r---~LVvr~i~TVgNYDYif~w~F~qdGtI 474 (721)
T PRK14696 399 NAVLLDETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQPNVSTERR---ELVVRWISTVGNYDYIFDWVFHENGTI 474 (721)
T ss_pred CCEEeeeEEEcCCCCeEEecCEEEEeeec-CCCceeccccCCCcceEeee---EEEEEEEEEecceeEEEEEEEecCceE
Confidence 679999999999999999 56999999998543366666 999999999999999999999999999
Q ss_pred EEEEEEeeeeeeeeeccccc-Cc--cccCCccceecCCccccccceeEEeeeeccCCCCCCceEEEEEEEecCCCCCCCc
Q 006970 374 KMGVGLSGVLEVKPVEYTYV-DQ--IKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFEKTKLVTRRNTNVNTPR 450 (623)
Q Consensus 374 e~~v~aTG~l~t~~~~~~~~-~~--~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~p~ 450 (623)
|++|+|||||+|+++..... +. +++.+|||+|+|+++|++|||+|||||||||||.+|||+++|++++|.+ .+||+
T Consensus 475 e~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~-~~nP~ 553 (721)
T PRK14696 475 GIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPR 553 (721)
T ss_pred EEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCcceEEEEeeeEccCC-CCCcc
Confidence 99999999999987543111 11 1246899999999999999999999999999999999999999999876 48999
Q ss_pred ceeEEEEEEeecchhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCC--cc----cCCCCCCChhccccccceee
Q 006970 451 KSYWTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGS--II----GPMLMEDDYPQIRAGFTNYN 523 (623)
Q Consensus 451 ~~~~~~~~~~l~tE~~a~~~~~~-~~r~w~i~N~~~~N~~G~p~gYkl~p~~--~~----~~~~~~~s~~~~ra~fa~~~ 523 (623)
+++|++++++++||++|++++++ +.|. |+|++++|++|+|+||||+|+. +. .+++.++|+..+||+||+|+
T Consensus 554 g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~~~ 631 (721)
T PRK14696 554 TSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMDKQ 631 (721)
T ss_pred ceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCccccccccccCCcchhhhhhhhhhCc
Confidence 99999999999999999999999 8986 9999999999999999999974 42 23688999999999999999
Q ss_pred eEEeecCCCCCCCCCcCccCCCCCCChhccccCCCceeeCCeEEEEEeccccCCCCCCCCcccceeeeeEEEecCCCCCC
Q 006970 524 VWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGFELRPTNFFEYN 603 (623)
Q Consensus 524 lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~n 603 (623)
||||+|+++|+||+|+|++|+.+++||++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++|
T Consensus 632 lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~~e~i~n~DiV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~nFFd~n 711 (721)
T PRK14696 632 LWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDET 711 (721)
T ss_pred EEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCcccCCceEEEEecCcccCCchhhCCCccceeeeEEEEcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 006970 604 PVLKVIPPK 612 (623)
Q Consensus 604 P~ldvp~~~ 612 (623)
|+||||++.
T Consensus 712 Paldvp~~~ 720 (721)
T PRK14696 712 PTLGLLKKD 720 (721)
T ss_pred cccCCCCCC
Confidence 999999974
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-145 Score=1188.57 Aligned_cols=607 Identities=54% Similarity=0.915 Sum_probs=552.2
Q ss_pred hhhheeeeec-ccCCCC-CCCCCCCCHHHHHHHHHHHHhcCCC---CCeEEEEEEccCCChHHhhhhhccCCC-CCCcEE
Q 006970 5 FLLFSVTAVL-PISSSK-RHPLDSLRPSEFTRVQTIVKTSYPS---NNLSFHYVGMDEPDKAVVYSWLSNSKT-KFPRRA 78 (623)
Q Consensus 5 ~~~~~~~~~~-~~~~~~-~HPldpLs~~Ei~~a~~il~~~~~~---~~~~f~~i~L~EP~K~~vl~~l~~~~~-~p~R~A 78 (623)
|+++..-... .++.++ .|||||||+.||.+++.||+..+++ ...-|..|.|.||+|+-+|.|+.+..+ +|+|+|
T Consensus 9 ~~~~~~~~~~~~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP~~~pPpRRA 88 (670)
T KOG1186|consen 9 FLLPRLGPGLVSASQERPSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGPLPHPPPRRA 88 (670)
T ss_pred ccccccccccccccCCCCCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCCCCCCCccee
Confidence 3444333333 577777 8999999999999999999998753 677899999999999999999994433 789999
Q ss_pred EEEEEeCCeEEEEEEECCCCeEEEEEee-cCCCcCCCCHHHHHHHHHHHhcChHHHHHHHhcCCCCCceEEccccccccC
Q 006970 79 IVIARHNHQTHEIIVDLSKRSIVSDKVY-TGHGFPLLTLEEQHAGAALVLAYEPFKASVKKRGLNISDVVCSASTVGWYG 157 (623)
Q Consensus 79 ~vv~~~~~~~~e~vV~L~~~~v~~~~~~-~~~~~p~i~~~E~~~~e~~~~~~p~~~~a~~~~gid~~~v~~d~w~~G~~~ 157 (623)
++|...+|+++|++|||+++++++.+.. .+.+.|++|.+|+.+.++.+++.+.|...+.+||+.++.|.|.+|+.||++
T Consensus 89 ~vVaR~gg~t~e~~vdlst~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyg 168 (670)
T KOG1186|consen 89 LVVERHGGPTPEARVDLSTAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYG 168 (670)
T ss_pred EEEeecCCCceEEEEecchheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecc
Confidence 9999999999999999999999998766 677899999999999999999999999999999999999999999999988
Q ss_pred C-CC-CeeEEEEEEEEeeCCCCCcccCcCCCeEEEEecCCcEEEEEeCCccccCCCCCCCCCCcCCCCCCCCCCCCCcee
Q 006970 158 E-KK-SKRVLKFPCFYTDQGTINMFLRPIEGITIVVDIEEMKVTEYNDREVAPIPKPEPTEYRLSKLKPPFGPRLNSVAT 235 (623)
Q Consensus 158 ~-~~-~rRl~~~~~~~r~~~~~n~Ya~Pi~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i 235 (623)
. .. .||+++..||++ +...|+|.+||+|++++||+.+|||++++|++.+|+|+..+.+|+.+... ..+||+.
T Consensus 169 e~~~g~~Rlik~~~f~~-~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~p-----~~~pLq~ 242 (670)
T KOG1186|consen 169 EHPVGLERLIKHMAFYR-AGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVLP-----GFKPLQP 242 (670)
T ss_pred cCCcchhhhhhhccccc-CCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccCC-----CCccccc
Confidence 7 33 389999999999 66899999999999999999999999999999999999888888755321 3445777
Q ss_pred ec-cCCeEEEeceEEEeeceEEEEEecCCcceeEEeeEEecCCCCeEeEEEeeeceeeeeeccCCCCCC-----------
Q 006970 236 SS-TRPGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRRVLYRGFISELFIPYQDPSEG----------- 303 (623)
Q Consensus 236 ~q-eG~sf~v~g~~V~W~~W~f~~gf~~reGl~L~dv~~~d~~~~~~r~V~yr~Sl~Em~VpY~dp~~~----------- 303 (623)
.+ |||||+|+|+.|+|+||+|++||+.|+||+|++|+|.| .+..|+|+||+|+|||+||||||+++
T Consensus 243 isPeGP~FrVeG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d--~~~~r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge 320 (670)
T KOG1186|consen 243 ISPEGPGFRVEGHLVRWANWEFHIGFDVRAGLVISDASFFD--EDVYRRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGE 320 (670)
T ss_pred cCCCCCceEEEEEEEEeeccEEEEccCCccceEEEEEEEcC--CCceeeEEEEeeeeeeEEecCCCCchhheeeeecccc
Confidence 76 99999999999999999999999999999999999999 55589999999999999999999998
Q ss_pred ---------------C-------------CCCccEEecceEEEeeecCCCceeeeeecCCCCe-eeecccceEEEEEEEE
Q 006970 304 ---------------C-------------QDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGH-VREVRPEVSLVVRMVA 354 (623)
Q Consensus 304 ---------------C-------------~~G~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-v~~~r~~~~LVvr~i~ 354 (623)
| .+|.|.+++||+||||+++|.|||||++....+. ++.+|++++|||||++
T Consensus 321 ~G~G~~a~~L~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~ 400 (670)
T KOG1186|consen 321 FGLGQYAVSLAPGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHTEAEIPGLHITEVRPDVSLVVRMVT 400 (670)
T ss_pred cCCCccccccccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEccCCCceeeccccccCCCcccccccccEEEEEEee
Confidence 5 8899999999999999998889999999766664 7889999999999999
Q ss_pred EeeccceEEEEEEccCccEEEEEEEeeeeeeeeecccccCccccCCccceecCCccccccceeEEeeeeccCCCCCCceE
Q 006970 355 TVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDGYANSFE 434 (623)
Q Consensus 355 TVgNYdYi~~w~F~qDGtIe~~v~aTG~l~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~ 434 (623)
|||||||||||+||+||.||++|+|||||+++++.+... ...|||+|+++++|++|||+|+|||||||||++|++.
T Consensus 401 tv~NYdYi~d~~F~~~G~ie~~v~lTG~l~~~~~~~~~~----~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~ 476 (670)
T KOG1186|consen 401 TVGNYDYIVDYEFKPSGVIEAGVGLTGVLEVKPVEYGET----SDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSF 476 (670)
T ss_pred eecccceEEEEEEecCCeEEEEEeeEEEEEeeccccccc----cccccceecccccccccceEEEEEEcccccCCcccee
Confidence 999999999999999999999999999999988765422 3679999999999999999999999999999955544
Q ss_pred EEEEEEecCCCC-CCCcceeEEEEEEeecchhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCCcccCCCCCCCh
Q 006970 435 KTKLVTRRNTNV-NTPRKSYWTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGSIIGPMLMEDDY 512 (623)
Q Consensus 435 ~~d~~~~~~~~~-~~p~~~~~~~~~~~l~tE~~a~~~~~~-~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~~~~~~s~ 512 (623)
..+.+..+...+ .++++++|++++++++||++|+.+++. +++.|.|+|++++|++|+|+||||+|++++.+++++++.
T Consensus 477 v~~~~~~~~~~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~ 556 (670)
T KOG1186|consen 477 VRDELVTPRTPPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDY 556 (670)
T ss_pred eeeeEeecccCCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCch
Confidence 444444444334 677899999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hccccccceeeeEEeecCCCCCCCCCcCccCCCCCCChhccccCCCceeeCCeEEEEEeccccCCCCCCCCcccceeeee
Q 006970 513 PQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVMPTVSCGF 592 (623)
Q Consensus 513 ~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f 592 (623)
.++||+|++|+||||+|+++|.||||.|.+|++++++|+.|++.|++|+|+|||+|||+||||+|+.||||+|||+..||
T Consensus 557 ~~~r~af~~y~l~VT~y~~~E~~~~g~y~~~~~~~~tl~~w~~~nr~ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF 636 (670)
T KOG1186|consen 557 PQIRAAFTNYNLWVTPYNESEVWASGLYADQSQGDDTLAVWSQRNRSIENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGF 636 (670)
T ss_pred HHhhhhhhcceeEEeccCccccCcccccccCCCCCCcceehhhcccccccCceEEEEEcceeecCchhcCCCCcccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006970 593 ELRPTNFFEYNPVLKVIPPKHVQRPNYTGKN 623 (623)
Q Consensus 593 ~L~P~nFFd~nP~ldvp~~~~~~~~~~~~~~ 623 (623)
.|||+|||++||+|++||+...+.++|++++
T Consensus 637 ~LrP~NFF~~nP~l~~~p~~~~~~~~c~p~~ 667 (670)
T KOG1186|consen 637 ELRPTNFFERNPSLKSPPSKYVTAPKCTPKN 667 (670)
T ss_pred eeccccccccCccccCCCcceeecccccCCC
Confidence 9999999999999999999999999999863
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=7.8e-124 Score=1008.57 Aligned_cols=367 Identities=43% Similarity=0.783 Sum_probs=327.7
Q ss_pred Cceeec-cCCeEEEeceEEEeeceEEEEEecCCcceeEEeeEEecCCCCeEeE--EEeeeceeeeeeccCCCCCC-----
Q 006970 232 SVATSS-TRPGFKINGNTVKWANWVFNVGFDARVGTIISTASIYDINMHKYRR--VLYRGFISELFIPYQDPSEG----- 303 (623)
Q Consensus 232 P~~i~q-eG~sf~v~g~~V~W~~W~f~~gf~~reGl~L~dv~~~d~~~~~~r~--V~yr~Sl~Em~VpY~dp~~~----- 303 (623)
||+|+| ||+||+|+|++|+||+|+||++|++||||+||||+|+| ++ |+||+|||||+|||+||+++
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~------~~~~I~yr~sl~Em~vpY~d~~~~~~~~~ 74 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKG------ERRPILYRLSLQEMVVPYGDPDPPHHRKN 74 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETT------EEEEEEEEEEEEEEEEEEE-SSTTHHH-E
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeC------CCccEEEEEeeeeeeeecCCCCchhhccc
Confidence 899999 99999999999999999999999999999999999998 55 99999999999999999998
Q ss_pred ---------------------C-------------CCCccEEecceEEEeeecCCCceeeeeecCCCCe-eeecccceEE
Q 006970 304 ---------------------C-------------QDGTPVKTPNAVCIFERHAGDVMWRHTEAEMPGH-VREVRPEVSL 348 (623)
Q Consensus 304 ---------------------C-------------~~G~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~-v~~~r~~~~L 348 (623)
| .+|+|++++|||||||+|.| |||||++++.+.. ++|+| +|
T Consensus 75 ~~D~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~G-~l~kH~~~~~~~~~~~r~~---~L 150 (413)
T PF01179_consen 75 AFDSGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDAG-PLWKHTDYRTGRFEVRRSR---RL 150 (413)
T ss_dssp EEHHHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEEE-EEEEEEETTSSEEEEEEEE---EE
T ss_pred cccccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecCC-chhhcccccccccceeecc---EE
Confidence 5 77999999999999999955 9999999988655 55555 99
Q ss_pred EEEEEEEeeccceEEEEEEccCccEEEEEEEeeeeeeeeecccccCccccCCccceecCCccccccceeEEeeeeccCCC
Q 006970 349 VVRMVATVGNYDYIIDWEFKPSGSIKMGVGLSGVLEVKPVEYTYVDQIKEDQHGTLVADNSIAINHDHFLNYYLDLDIDG 428 (623)
Q Consensus 349 Vvr~i~TVgNYdYi~~w~F~qDGtIe~~v~aTG~l~t~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG 428 (623)
|||+|+|||||||||+|+|||||+||++|+|||||++... . .+ ++.+||++|+|+++|++|||+|+|||||||||
T Consensus 151 Vvr~i~TV~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~--~-~~--~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG 225 (413)
T PF01179_consen 151 VVRTISTVGNYDYIFDWIFYQDGSIEVEVRATGILSTSPY--A-PG--EQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDG 225 (413)
T ss_dssp EEEEEEEETTEEEEEEEEEETTS-EEEEEEEEE---EEET--T-TT--CGGGSEEEEETTEEEEEEEEEEEEEEEE-TTS
T ss_pred EEEEEEeccccceEEEEEEecCceEEEEEEeeeEEEEEec--C-CC--CccCCcceEcCCccccceeEEEEEEEccccCC
Confidence 9999999999999999999999999999999999998653 2 22 24779999999999999999999999999999
Q ss_pred CCCceEEEEEEEecC--CCCCCCcceeEEEEEEeecchhhhhhcCCC-CCcEEEEeCCCCCCCCCCceeEEEccCCcccC
Q 006970 429 YANSFEKTKLVTRRN--TNVNTPRKSYWTVEKETAKTEFEARLNLDT-KPMEFALVNPSKKTKIGHPVGYRLLPGSIIGP 505 (623)
Q Consensus 429 ~~Nsv~~~d~~~~~~--~~~~~p~~~~~~~~~~~l~tE~~a~~~~~~-~~r~w~i~N~~~~N~~G~p~gYkl~p~~~~~~ 505 (623)
++|||+++|+++++. +...||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|++++.+
T Consensus 226 ~~Nsv~~~d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~ 305 (413)
T PF01179_consen 226 TNNSVVEVDIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHL 305 (413)
T ss_dssp SEEEEEEEEEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-
T ss_pred CCCeEEEEEeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccc
Confidence 999999999999986 334789999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCCChhccccccceeeeEEeecCCCCCCCCCcCccCCCCCCChhccccCCCceeeCCeEEEEEeccccCCCCCCCCcc
Q 006970 506 MLMEDDYPQIRAGFTNYNVWVTPYKKSEKYSGGNYVDQSHGDDTLLQWTDGNREIENTDIVLWYTMGIHHAPCQEDFPVM 585 (623)
Q Consensus 506 ~~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvm 585 (623)
+++++|+..+||+||+|+||||||+|+|+||+|+|++|++++.+|++|+++||+|+|||||+|+|+|+||+||+||||||
T Consensus 306 l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvm 385 (413)
T PF01179_consen 306 LAPPDSWVARRASFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVM 385 (413)
T ss_dssp SSSTTSCHHHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSE
T ss_pred cCCCcchhhhccccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeEEEecCCCCCCCCCCCCCCCC
Q 006970 586 PTVSCGFELRPTNFFEYNPVLKVIPPKH 613 (623)
Q Consensus 586 p~~~~~f~L~P~nFFd~nP~ldvp~~~~ 613 (623)
|++++||+|||+|||++||+||+|++.|
T Consensus 386 p~~~~gf~L~P~nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 386 PVEWLGFMLKPFNFFDRNPALDVPPSVQ 413 (413)
T ss_dssp EEEEEEEEEEEESSSSSSTTTTCTTC--
T ss_pred CCcEEEEEEEcCCCCCCCccccCCCCCC
Confidence 9999999999999999999999999875
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.89 E-value=1.3e-23 Score=187.06 Aligned_cols=98 Identities=36% Similarity=0.647 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCCC-CeeEEEEEEEEeeCCCCCcccCcCCCeEE
Q 006970 112 PLLTLEEQHAGAALVLAYEPFKASVKKRGL-NISDVVCSASTVGWYGEKK-SKRVLKFPCFYTDQGTINMFLRPIEGITI 189 (623)
Q Consensus 112 p~i~~~E~~~~e~~~~~~p~~~~a~~~~gi-d~~~v~~d~w~~G~~~~~~-~rRl~~~~~~~r~~~~~n~Ya~Pi~gl~~ 189 (623)
|+++.+|+.+++++++++|+|+++|++||| |++.+.|++|++|+++..+ ++|++|++||+|.. .+|+|||||+||++
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~-~~n~YahPi~gl~~ 79 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDS-GNNFYAHPIEGLEP 79 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SS-TS-GGGSEEECEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcC-CCcccccccCceEE
Confidence 789999999999999999999999999999 7899999999999988755 89999999999954 44999999999999
Q ss_pred EEecCCcEEEEEeCCc-cccCC
Q 006970 190 VVDIEEMKVTEYNDRE-VAPIP 210 (623)
Q Consensus 190 ~vD~~~~~vv~i~d~~-~~~~p 210 (623)
+||++++||++|+|++ .+|+|
T Consensus 80 ~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 80 LVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EEETTTTEEEEEEEEEEEETT-
T ss_pred EEECCCCEEEEEEeCCceeeCC
Confidence 9999999999999988 56655
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.79 E-value=3.3e-20 Score=160.64 Aligned_cols=83 Identities=31% Similarity=0.460 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCCeEEEEEEccCCChHHhhhhhccCCCCCCcEEEEEEEeCCeEEEEEEECCCCe
Q 006970 22 HPLDSLRPSEFTRVQTIVKTSY--PSNNLSFHYVGMDEPDKAVVYSWLSNSKTKFPRRAIVIARHNHQTHEIIVDLSKRS 99 (623)
Q Consensus 22 HPldpLs~~Ei~~a~~il~~~~--~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~p~R~A~vv~~~~~~~~e~vV~L~~~~ 99 (623)
|||||||++||++|+++|+++. .+.+++|.+|+|.||+|++|++| +.++++|+|+|+|+++++++.+|++|||+.++
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~~~~~~~F~~I~L~EP~K~~vl~~-~~~~~~p~R~A~vv~~~~~~~~e~vVdl~~~~ 79 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPLAGEKNRFRSIELQEPPKAEVLAF-ERGGPPPPRRARVVVYDGGQSYEAVVDLTSGK 79 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGTTTTSEEEEEEEEE---HHHHHHH-HCCTTTS-EEEEEEEEETSSSSEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCHHHHhcc-ccCCcCCCeEEEEEEEECCeeeeEEEECcCCc
Confidence 9999999999999999999998 46899999999999999999999 44444689999999999877799999999999
Q ss_pred EEEEEe
Q 006970 100 IVSDKV 105 (623)
Q Consensus 100 v~~~~~ 105 (623)
|++|+.
T Consensus 80 V~~~~~ 85 (86)
T PF02727_consen 80 VVSWKE 85 (86)
T ss_dssp CSCEEE
T ss_pred cccCcc
Confidence 998864
No 9
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=44.70 E-value=12 Score=29.94 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=20.2
Q ss_pred ccCCCC-CCCCCCCCHHHHHHHHHHHHh
Q 006970 15 PISSSK-RHPLDSLRPSEFTRVQTIVKT 41 (623)
Q Consensus 15 ~~~~~~-~HPldpLs~~Ei~~a~~il~~ 41 (623)
||-... .=|..+||+.|+++|.+.|++
T Consensus 25 pHgdH~HyI~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 25 PHGDHFHYIPKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EETTEEEEEEGGGS-HHHHHHHHHHHH-
T ss_pred eCCCcccCCchhhCCHHHHHHHHHHHhc
Confidence 665444 458999999999999999875
No 10
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=42.69 E-value=8.1 Score=34.36 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CCeEEEEEEccCCChHHhhhhhccCC--CC-CCcEEEEEEEe--CC-e------E-EEE
Q 006970 26 SLRPSEFTRVQTIVKTSYPS-NNLSFHYVGMDEPDKAVVYSWLSNSK--TK-FPRRAIVIARH--NH-Q------T-HEI 91 (623)
Q Consensus 26 pLs~~Ei~~a~~il~~~~~~-~~~~f~~i~L~EP~K~~vl~~l~~~~--~~-p~R~A~vv~~~--~~-~------~-~e~ 91 (623)
|+|.+|+.++.+++++.... ..+. ...|..+.+-.+..|-.+.. .. -.|.+.+.+|. ++ . - .++
T Consensus 2 pi~~~E~~~~~~~~~~~p~~~~al~--~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl~~ 79 (101)
T PF02728_consen 2 PITLEEFAEAEEIVKADPEFQAALK--KRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGLEP 79 (101)
T ss_dssp ---HHHHHHHHHHHHTGHHHHHHHH--HTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECEEE
T ss_pred CcCHHHHHHHHHHHHHCHHHHHHHH--HhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCceEE
Confidence 68999999999999965321 0000 00122333333445543321 12 45888888776 22 1 1 478
Q ss_pred EEECCCCeEEEEEe
Q 006970 92 IVDLSKRSIVSDKV 105 (623)
Q Consensus 92 vV~L~~~~v~~~~~ 105 (623)
+||+.+.+|+++..
T Consensus 80 ~vD~~~~~vi~i~d 93 (101)
T PF02728_consen 80 LVDLDSMEVIRIED 93 (101)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCCEEEEEEe
Confidence 89999999999863
No 11
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=23.98 E-value=86 Score=25.94 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC
Q 006970 21 RHPLDSLRPSEFTRVQTIVKTSYP 44 (623)
Q Consensus 21 ~HPldpLs~~Ei~~a~~il~~~~~ 44 (623)
.+|-++||.+|+++|++.|.+...
T Consensus 20 ~~pk~~lt~~~V~~~m~~ii~~~v 43 (69)
T PF11148_consen 20 PNPKEDLTEAEVKAAMQAIIAKKV 43 (69)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC
Confidence 799999999999999999998753
Done!