Query 006971
Match_columns 623
No_of_seqs 340 out of 1015
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 17:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1.6E-85 3.6E-90 669.4 23.3 255 215-469 1-258 (258)
2 KOG4441 Proteins containing BT 100.0 6E-30 1.3E-34 288.8 17.3 241 25-330 20-263 (571)
3 PHA02713 hypothetical protein; 100.0 2.2E-28 4.8E-33 275.7 16.4 228 30-326 14-247 (557)
4 PHA02790 Kelch-like protein; P 99.9 1.6E-26 3.4E-31 256.3 12.9 206 31-304 12-222 (480)
5 PHA03098 kelch-like protein; P 99.9 2.4E-25 5.2E-30 248.6 14.7 222 38-328 6-237 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 2.9E-17 6.4E-22 145.1 8.3 105 33-145 2-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 1.4E-15 3E-20 126.8 7.1 89 43-139 1-90 (90)
8 KOG4350 Uncharacterized conser 99.5 3.1E-13 6.7E-18 143.1 11.7 215 31-314 34-254 (620)
9 KOG2075 Topoisomerase TOP1-int 99.4 3E-12 6.6E-17 138.5 13.5 194 24-258 97-296 (521)
10 KOG4591 Uncharacterized conser 99.1 7.5E-10 1.6E-14 108.7 11.3 170 20-236 42-220 (280)
11 KOG4682 Uncharacterized conser 98.7 3.9E-08 8.6E-13 105.0 9.8 177 34-255 62-245 (488)
12 KOG0783 Uncharacterized conser 98.6 1.1E-07 2.4E-12 108.4 7.5 147 19-182 686-845 (1267)
13 KOG0783 Uncharacterized conser 98.3 1.3E-06 2.9E-11 99.9 7.1 65 39-105 556-633 (1267)
14 PF11822 DUF3342: Domain of un 97.8 2.2E-05 4.7E-10 83.1 4.9 93 44-146 1-104 (317)
15 PF07707 BACK: BTB And C-termi 96.7 0.00059 1.3E-08 59.5 1.0 98 160-306 1-101 (103)
16 PF02214 BTB_2: BTB/POZ domain 96.7 0.0013 2.8E-08 57.3 2.9 81 44-127 1-88 (94)
17 smart00512 Skp1 Found in Skp1 96.7 0.0037 8.1E-08 55.9 5.9 79 44-125 4-104 (104)
18 KOG2716 Polymerase delta-inter 96.6 0.0097 2.1E-07 60.9 8.8 94 44-146 7-105 (230)
19 KOG2838 Uncharacterized conser 96.4 0.0036 7.9E-08 64.9 4.3 83 23-107 112-197 (401)
20 KOG3473 RNA polymerase II tran 95.8 0.031 6.8E-07 49.8 6.9 74 49-125 25-112 (112)
21 smart00875 BACK BTB And C-term 95.2 0.027 5.8E-07 48.4 4.5 65 220-305 35-99 (101)
22 PF03931 Skp1_POZ: Skp1 family 94.0 0.16 3.6E-06 41.3 6.1 55 44-102 3-58 (62)
23 KOG1724 SCF ubiquitin ligase, 92.5 0.25 5.4E-06 48.3 5.7 89 49-146 13-127 (162)
24 KOG3840 Uncharaterized conserv 89.3 1.5 3.2E-05 46.7 8.2 92 36-129 90-188 (438)
25 KOG0511 Ankyrin repeat protein 87.8 0.91 2E-05 49.6 5.6 74 51-127 301-379 (516)
26 KOG2838 Uncharacterized conser 85.4 0.66 1.4E-05 48.7 3.0 58 52-110 262-330 (401)
27 KOG2714 SETA binding protein S 83.6 3 6.6E-05 46.3 7.1 81 44-127 13-99 (465)
28 PF01466 Skp1: Skp1 family, di 82.9 2 4.4E-05 36.6 4.5 34 107-146 10-43 (78)
29 KOG1665 AFH1-interacting prote 75.4 9.2 0.0002 39.4 7.1 88 44-140 11-105 (302)
30 KOG1987 Speckle-type POZ prote 74.9 4.1 9E-05 42.5 4.8 89 50-146 109-201 (297)
31 KOG0511 Ankyrin repeat protein 71.9 1.5 3.3E-05 48.0 0.6 95 28-126 134-232 (516)
32 COG5201 SKP1 SCF ubiquitin lig 70.1 20 0.00043 34.0 7.4 93 44-146 4-122 (158)
33 PF14363 AAA_assoc: Domain ass 56.2 7.1 0.00015 34.7 1.8 42 422-464 30-71 (98)
34 KOG2715 Uncharacterized conser 54.5 48 0.001 33.0 7.2 97 42-146 21-122 (210)
35 PF04508 Pox_A_type_inc: Viral 53.1 12 0.00027 25.1 2.1 15 541-555 2-16 (23)
36 KOG2723 Uncharacterized conser 32.3 1.6E+02 0.0035 30.4 7.3 81 44-127 11-97 (221)
37 PF07407 Seadorna_VP6: Seadorn 31.9 46 0.00099 36.1 3.5 30 526-555 32-61 (420)
38 PF10929 DUF2811: Protein of u 27.7 44 0.00096 27.3 2.0 19 431-449 8-26 (57)
39 PF02183 HALZ: Homeobox associ 26.5 65 0.0014 25.0 2.6 23 527-549 20-42 (45)
40 COG3510 CmcI Cephalosporin hyd 26.4 48 0.001 33.8 2.4 34 420-453 184-219 (237)
41 PF01166 TSC22: TSC-22/dip/bun 26.4 82 0.0018 25.9 3.2 26 530-555 11-36 (59)
42 PF06156 DUF972: Protein of un 25.9 67 0.0014 29.4 3.0 29 527-555 30-58 (107)
43 COG2433 Uncharacterized conser 25.2 4E+02 0.0086 31.6 9.5 68 384-453 298-367 (652)
44 KOG3713 Voltage-gated K+ chann 24.7 1.9E+02 0.0042 33.0 6.9 93 39-140 28-134 (477)
45 PRK14127 cell division protein 24.6 84 0.0018 28.9 3.4 31 527-557 38-68 (109)
46 PF13764 E3_UbLigase_R4: E3 ub 22.4 62 0.0014 39.3 2.7 75 341-447 253-335 (802)
47 PF05377 FlaC_arch: Flagella a 20.6 1.3E+02 0.0028 24.5 3.3 25 528-552 16-40 (55)
48 PF10473 CENP-F_leu_zip: Leuci 20.6 1.1E+02 0.0023 29.5 3.4 29 527-555 74-102 (140)
49 PF11123 DNA_Packaging_2: DNA 20.2 69 0.0015 27.7 1.8 16 431-446 31-46 (82)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1.6e-85 Score=669.40 Aligned_cols=255 Identities=51% Similarity=0.790 Sum_probs=226.0
Q ss_pred ccchhhhhhcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcccccccCCC---CCCCCcchhHHHHHHHHHHHHhc
Q 006971 215 VDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKG---RKKIEPHQEHEKRVVLETIVSLL 291 (623)
Q Consensus 215 ~dWW~EDl~~Ls~d~f~rVI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~~~~~---~~~~~~~~~~~~r~LLEtIv~lL 291 (623)
.|||+||++.|++|+|+|||.+|+++|+++++|+++|++||++|+|+....... ..........++|.+||+||+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL 80 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL 80 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence 379999999999999999999999999999999999999999999998433221 11223456689999999999999
Q ss_pred CCCCCCcCHHHHHHHHHHHhhhcCCHHhHHHHHHHHHhccccccccccccccCCCCCCcccchhHHHHHHHHHHccccCC
Q 006971 292 PRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDG 371 (623)
Q Consensus 292 P~~k~~vs~~fL~~LLr~a~~l~aS~~Cr~~LEkrIg~qLd~AtldDLLips~~~~~~~lyDvd~V~ril~~Fl~~~~~~ 371 (623)
|.+|+++||+|||+|||+|+++++|..||.+||+|||.|||||||||||||+.+...+|+||||+|+|||++||.++++.
T Consensus 81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~ 160 (258)
T PF03000_consen 81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEA 160 (258)
T ss_pred CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999993333459999999999999999986532
Q ss_pred CCcccCCCCCCCCCCchhHHHHHHHHHHHhhhhcCCCCCChHHHHHHHHhcCCCccccchhHHHHHHHHHHhCCCCCHHH
Q 006971 372 NRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKAHPTLSDME 451 (623)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLk~Hp~lse~E 451 (623)
+...........+++.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~E 240 (258)
T PF03000_consen 161 GEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEEE 240 (258)
T ss_pred ccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHHH
Confidence 11111111111356788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccccCCHHHH
Q 006971 452 RKKVCSLMDCQKLSREAC 469 (623)
Q Consensus 452 r~~lC~~~dc~KLS~eac 469 (623)
|++||++|||||||+|||
T Consensus 241 r~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 241 RKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHHHHhhCCcccCCcccC
Confidence 999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=6e-30 Score=288.82 Aligned_cols=241 Identities=20% Similarity=0.249 Sum_probs=208.1
Q ss_pred hHHHHhhHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEEeCCCCCCHHHHHHHHHHhcC
Q 006971 25 STAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKFCYG 103 (623)
Q Consensus 25 ~~~~~~~~~~~r~~~~~~DV~I~V~~~~F~lHK~vLas~S~Yfr~lf~~~-~e~~~~~I~L~~~PGgae~Felv~~FcY~ 103 (623)
..+--++.+-+|.++.+|||+|.|++++|++||.||||+|+|||+||++. +|+++.+|+|++++ +++++++++|+||
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt 97 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYT 97 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhc
Confidence 44455677899999999999999999999999999999999999999987 88899999999985 9999999999999
Q ss_pred CCccCCchhHhhHHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHHHhchhhHHHHHHHHH
Q 006971 104 INFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYI 183 (623)
Q Consensus 104 ~~i~It~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae~~~iv~rCidsLa~k 183 (623)
++++|+.+||+.|+.||.+|||++ |++.|++||.+++. +.||.++..+|+.+++ ..|...
T Consensus 98 ~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~---------~~Nclgi~~~a~~~~~-----~~L~~~ 157 (571)
T KOG4441|consen 98 GKLEISEDNVQELLEAASLLQIPE------VVDACCEFLESQLD---------PSNCLGIRRFAELHSC-----TELLEV 157 (571)
T ss_pred ceEEechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCc-----HHHHHH
Confidence 999999999999999999999999 99999999999985 6699999999999986 466665
Q ss_pred Hhhc--ccCCCCCCCCCCCCCcCCCCCCCCCCCccchhhhhhcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccc
Q 006971 184 ACKE--NQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRG 261 (623)
Q Consensus 184 A~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~Ls~d~f~rVI~am~~~g~~~e~I~~aL~~Yak~~l~~ 261 (623)
|-.. .+|. .-|-.|||..|+.+.+..+|.......-+|+.|+++++.|++++...
T Consensus 158 a~~~i~~~F~-----------------------~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~ 214 (571)
T KOG4441|consen 158 ADEYILQHFA-----------------------EVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEE 214 (571)
T ss_pred HHHHHHHHHH-----------------------HHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhh
Confidence 5432 2221 12447999999999777777776666669999999999999998764
Q ss_pred ccccCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhhhcCCHHhHHHHHHHHHhc
Q 006971 262 LEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQ 330 (623)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~r~LLEtIv~lLP~~k~~vs~~fL~~LLr~a~~l~aS~~Cr~~LEkrIg~q 330 (623)
+ +.+...|+++|+ | +.++..||...+....++..+..|+..|..-.-.+
T Consensus 215 R--------------~~~~~~ll~~vr--~----~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~ 263 (571)
T KOG4441|consen 215 R--------------EEHLPALLEAVR--L----PLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYH 263 (571)
T ss_pred H--------------HHHHHHHHHhcC--c----cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHh
Confidence 3 357788999999 5 46999999999999999999999999998877333
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=2.2e-28 Score=275.68 Aligned_cols=228 Identities=14% Similarity=0.162 Sum_probs=184.1
Q ss_pred hhHHHHhhcCCCeeEEEEEC-CEEEeeccccccccChHHHHhhcCC-CCC-CCceEEeCCCCCCHHHHHHHHHHhcCCCc
Q 006971 30 RTSEWIFSQEIPSDVTVHVG-GTSFSLHKFPLVSKCGYIRKLVSVS-SEA-DLSVIEIPDVPGGAEAFELAAKFCYGINF 106 (623)
Q Consensus 30 ~~~~~~r~~~~~~DV~I~V~-~~~F~lHK~vLas~S~Yfr~lf~~~-~e~-~~~~I~L~~~PGgae~Felv~~FcY~~~i 106 (623)
++.+-+|.++.+|||+|.|+ |++|++||.||||+|+||++||+++ +|+ .+.+|+|++++ +++|+.+++|+||++
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~- 90 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH- 90 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC-
Confidence 66778899999999999998 8999999999999999999999987 554 36789999995 999999999999997
Q ss_pred cCCchhHhhHHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHHHhchhhHHHHHHHHHHhh
Q 006971 107 EINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACK 186 (623)
Q Consensus 107 ~It~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae~~~iv~rCidsLa~kA~~ 186 (623)
||.+||+.|+.||++|||+. |++.|++||.+.+. ..||.+++.+|+.+.+ ..|..+|..
T Consensus 91 -i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~---------~~NCl~i~~~~~~~~~-----~~L~~~a~~ 149 (557)
T PHA02713 91 -ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTN---------HDTCIYMYHRLYEMSH-----IPIVKYIKR 149 (557)
T ss_pred -CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCC---------ccchHHHHHHHHhccc-----hHHHHHHHH
Confidence 79999999999999999999 99999999999984 5699999987887764 225544433
Q ss_pred c--ccCCCCCCCCCCCCCcCCCCCCCCCCCccchhhhhhcCChHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhhccccc
Q 006971 187 E--NQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMA-RGFKQYALGPVLMLYAQKSLRGLE 263 (623)
Q Consensus 187 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~Ls~d~f~rVI~am~~-~g~~~e~I~~aL~~Yak~~l~~~~ 263 (623)
. .+|... .-.|||..|+.+.+..+|+.... ...+|+.|++|+++|++++...+
T Consensus 150 ~i~~~f~~v-----------------------~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r- 205 (557)
T PHA02713 150 MLMSNIPTL-----------------------ITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITE- 205 (557)
T ss_pred HHHHHHHHH-----------------------hCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHH-
Confidence 2 222200 11589999999977777766442 33489999999999999875532
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhhhcCCHHhHHHHHHH
Q 006971 264 VFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKR 326 (623)
Q Consensus 264 ~~~~~~~~~~~~~~~~~r~LLEtIv~lLP~~k~~vs~~fL~~LLr~a~~l~aS~~Cr~~LEkr 326 (623)
.+...||+.|+ || .++.++++ .+.....+..++.|+..|+..
T Consensus 206 --------------~~~~~ll~~VR--~~----~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 206 --------------EQLLCILSCID--IQ----NLDKKSRL-LLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred --------------HHHhhhHhhhh--Hh----hcchhhhh-hhcchHHHHhhHHHHHHHhhh
Confidence 23458999999 54 47778877 566778888899999988764
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=256.30 Aligned_cols=206 Identities=10% Similarity=0.023 Sum_probs=159.4
Q ss_pred hHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEEe--CCCCCCHHHHHHHHHHhcCCCcc
Q 006971 31 TSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEI--PDVPGGAEAFELAAKFCYGINFE 107 (623)
Q Consensus 31 ~~~~~r~~~~~~DV~I~V~~~~F~lHK~vLas~S~Yfr~lf~~~-~e~~~~~I~L--~~~PGgae~Felv~~FcY~~~i~ 107 (623)
.---+|.++.+|||+.. .|.+|+|||.||||+|+|||+||+++ +|+.. +|.+ .|++ +++|+.+++|+|||+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~--~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 12 NILALSMTKKFKTIIEA-IGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLD--IHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hHHHHHhhhhhceEEEE-cCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcC--HHHHHHHHHhheeeeEE
Confidence 33467889999998764 55699999999999999999999987 66643 5665 3784 99999999999999999
Q ss_pred CCchhHhhHHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHHHhchhhHHHHHHHHHHhhc
Q 006971 108 INTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKE 187 (623)
Q Consensus 108 It~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae~~~iv~rCidsLa~kA~~~ 187 (623)
||.+||+.|+.||.+|||++ |++.|++||.+++. ..||.+++.+|+.|++ +.|..+|...
T Consensus 88 it~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~---------~~NCl~i~~~A~~y~~-----~~L~~~a~~f 147 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEF------IIYTCINFILRDFR---------KEYCVECYMMGIEYGL-----SNLLCHTKDF 147 (480)
T ss_pred EecccHHHHHHHHHHhChHH------HHHHHHHHHHhhCC---------cchHHHHHHHHHHhCH-----HHHHHHHHHH
Confidence 99999999999999999999 99999999999984 5699999999999987 7788777553
Q ss_pred --ccCCCCCCCCCCCCCcCCCCCCCCCCCccchhhhhhcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccccccc
Q 006971 188 --NQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVF 265 (623)
Q Consensus 188 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~Ls~d~f~rVI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~~ 265 (623)
.+|... ...-+|||..|++ ..+|+......-+|+.|++++++|+++. +
T Consensus 148 i~~nF~~v---------------------~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~-~----- 197 (480)
T PHA02790 148 IAKHFLEL---------------------EDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR-R----- 197 (480)
T ss_pred HHHhHHHH---------------------hcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh-H-----
Confidence 233210 0000378999996 3566555555558999999999999863 1
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcCHHHHH
Q 006971 266 GKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLS 304 (623)
Q Consensus 266 ~~~~~~~~~~~~~~~r~LLEtIv~lLP~~k~~vs~~fL~ 304 (623)
.....|++.|..++ ..+.++..+|-
T Consensus 198 ------------~~~~~l~~~vr~~i--r~~~l~~~~l~ 222 (480)
T PHA02790 198 ------------NRLGNLLLLIKNVI--RSNYLSPRGIN 222 (480)
T ss_pred ------------HHHHHHHHHHHhcC--ChhhCCHHHHH
Confidence 23456777665412 11456666663
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=2.4e-25 Score=248.55 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=177.7
Q ss_pred cCCCeeEEEEE--CCEEEeeccccccccChHHHHhhcCCCCCCCceEEeCCCCCCHHHHHHHHHHhcCCCccCCchhHhh
Q 006971 38 QEIPSDVTVHV--GGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAG 115 (623)
Q Consensus 38 ~~~~~DV~I~V--~~~~F~lHK~vLas~S~Yfr~lf~~~~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~It~~NV~~ 115 (623)
++.+|||+|.| +|++|++||.+|+++|+||++||++... +.+|+|++ + +++|+.+++|+|||+++|+.+||..
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 68999999998 9999999999999999999999998633 46799987 4 8999999999999999999999999
Q ss_pred HHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHHHhchhhHHHHHHHHHHhhc--ccCCCC
Q 006971 116 LRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKE--NQFSGS 193 (623)
Q Consensus 116 L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae~~~iv~rCidsLa~kA~~~--~~~~~~ 193 (623)
|+.||++|||++ |+..|++||.+.+ ...||..++.+|+.|++ +.|...|-.. .+|...
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~~~i~~nf~~v 140 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAYNYIRNNIELI 140 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999987 36799999999999985 4444433211 111100
Q ss_pred CCCCCCCCCcCCCCCCCCCCCccchhhhhhcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcccccccCCCCCCCC
Q 006971 194 GRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIE 273 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~Ls~d~f~rVI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~~~~~~~~~~ 273 (623)
--.+||..|+.+.+..+|+.-...--+|+.|+++++.|+++....+
T Consensus 141 -----------------------~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r----------- 186 (534)
T PHA03098 141 -----------------------YNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNK----------- 186 (534)
T ss_pred -----------------------hcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhh-----------
Confidence 0147899999998777776655444489999999999998875433
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH------HHhhhcCCHHhHHHHHHHHH
Q 006971 274 PHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLR------AAIYLETTVACRLDLEKRMA 328 (623)
Q Consensus 274 ~~~~~~~r~LLEtIv~lLP~~k~~vs~~fL~~LLr------~a~~l~aS~~Cr~~LEkrIg 328 (623)
..+...|++.|+ + +.++..+|..+.+ ...++ .+..|+..++....
T Consensus 187 ---~~~~~~ll~~vR--~----~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (534)
T PHA03098 187 ---YKDICLILKVLR--I----TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKY 237 (534)
T ss_pred ---HhHHHHHHhhcc--c----cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHh
Confidence 245678999999 5 4689999998876 33444 67788887765543
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.70 E-value=2.9e-17 Score=145.07 Aligned_cols=105 Identities=38% Similarity=0.551 Sum_probs=92.9
Q ss_pred HHHhhcCCCeeEEEEEC-CEEEeeccccccccChHHHHhhcCC--CCCCCceEEeCCCCCCHHHHHHHHHHhcCCCccCC
Q 006971 33 EWIFSQEIPSDVTVHVG-GTSFSLHKFPLVSKCGYIRKLVSVS--SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEIN 109 (623)
Q Consensus 33 ~~~r~~~~~~DV~I~V~-~~~F~lHK~vLas~S~Yfr~lf~~~--~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~It 109 (623)
+.++.++.+||++|.|+ +.+|++||.+|+++|+||++||... .+....+|.+++++ +++|+.+++|+|++.+.++
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCC
Confidence 34677899999999999 8999999999999999999999987 34444578899996 9999999999999999998
Q ss_pred -chhHhhHHHhhhhhccccccccchHHHHHHHHHHHh
Q 006971 110 -TENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEV 145 (623)
Q Consensus 110 -~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~ 145 (623)
.+|+..++..|++|+|++ |+..|+.||.+.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999999999 999999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.60 E-value=1.4e-15 Score=126.79 Aligned_cols=89 Identities=36% Similarity=0.496 Sum_probs=81.5
Q ss_pred eEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEEeCCCCCCHHHHHHHHHHhcCCCccCCchhHhhHHHhhh
Q 006971 43 DVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAE 121 (623)
Q Consensus 43 DV~I~V~~~~F~lHK~vLas~S~Yfr~lf~~~-~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~It~~NV~~L~cAA~ 121 (623)
||+|.|||..|++||.+|+++|+||++||.+. .+.....+.+.+++ +++|+.+++|+|++++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999986 34456688898875 9999999999999999999999999999999
Q ss_pred hhccccccccchHHHHHH
Q 006971 122 YLEMTEDYAVGNLVGRAE 139 (623)
Q Consensus 122 ~LqMte~~~~~NL~~~ce 139 (623)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999999 888774
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.46 E-value=3.1e-13 Score=143.12 Aligned_cols=215 Identities=19% Similarity=0.210 Sum_probs=154.0
Q ss_pred hHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEEeCCCCCCHHHHHHHHHHhcCCCccCC
Q 006971 31 TSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEIN 109 (623)
Q Consensus 31 ~~~~~r~~~~~~DV~I~V~~~~F~lHK~vLas~S~Yfr~lf~~~-~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~It 109 (623)
....++.....+||++.|+++.|++||.+||++|.|||+|+-++ .|+.+..|.|++- .+++|..+++|+|+|++.++
T Consensus 34 ~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~ 111 (620)
T KOG4350|consen 34 SFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQET--NSEAFRALLRYIYTGKIDLA 111 (620)
T ss_pred HHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccc--cHHHHHHHHHHHhhcceecc
Confidence 34578888999999999999999999999999999999999887 7888888988865 59999999999999999987
Q ss_pred chh---HhhHHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHHHhchhhHHHHHHHHHHhh
Q 006971 110 TEN---VAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACK 186 (623)
Q Consensus 110 ~~N---V~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae~~~iv~rCidsLa~kA~~ 186 (623)
... ....+.-|...++.+ |.....+||.+.+ .++|--.++..|.-|++ ..|....|.
T Consensus 112 ~~~ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l-----~~Lt~~C~m 171 (620)
T KOG4350|consen 112 GVEEDILLDYLSLAHRYGFIQ------LETAISEYLKEIL---------KNENVCMIFDAAYLYQL-----TDLTDYCMM 171 (620)
T ss_pred cchHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH---------cccceeeeeeHHHHhcc-----hHHHHHHHH
Confidence 754 344445555555555 9999999999976 45565556677777765 445444443
Q ss_pred c--ccCCCCCCCCCCCCCcCCCCCCCCCCCccchhhhhhcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcccccc
Q 006971 187 E--NQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEV 264 (623)
Q Consensus 187 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~Ls~d~f~rVI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~ 264 (623)
. .+.. .---.+.|..|+.+-.+.++.-.. --..|..|+-|+..|-+..-
T Consensus 172 fmDrnA~-----------------------~lL~~~sFn~LSk~sL~e~l~RDs-FfApE~~IFlAv~~W~~~Ns----- 222 (620)
T KOG4350|consen 172 FMDRNAD-----------------------QLLEDPSFNRLSKDSLKELLARDS-FFAPELKIFLAVRSWHQNNS----- 222 (620)
T ss_pred HHhcCHH-----------------------hhhcCcchhhhhHHHHHHHHhhhc-ccchHHHHHHHHHHHHhcCc-----
Confidence 1 1000 000124466778776666554311 12277899999999986542
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhhhc
Q 006971 265 FGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLE 314 (623)
Q Consensus 265 ~~~~~~~~~~~~~~~~r~LLEtIv~lLP~~k~~vs~~fL~~LLr~a~~l~ 314 (623)
....+.|+|.|+ || .++..-|+..+|-.-++.
T Consensus 223 ------------ke~~k~~~~~VR--LP----Lm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 223 ------------KEASKVLLELVR--LP----LMTLTELLNVVRPSGLLS 254 (620)
T ss_pred ------------hhhHHHHHHHHh--hh----hccHHHHHhccCcccCcC
Confidence 145677888888 75 466667776666555443
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.38 E-value=3e-12 Score=138.48 Aligned_cols=194 Identities=18% Similarity=0.229 Sum_probs=153.3
Q ss_pred chHHHHhhHHHHhhcCCCeeEEEEECC-----EEEeeccccccccChHHHHhhcCC-CCCCCceEEeCCCCCCHHHHHHH
Q 006971 24 LSTAMKRTSEWIFSQEIPSDVTVHVGG-----TSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELA 97 (623)
Q Consensus 24 ~~~~~~~~~~~~r~~~~~~DV~I~V~~-----~~F~lHK~vLas~S~Yfr~lf~~~-~e~~~~~I~L~~~PGgae~Felv 97 (623)
+...++.++.-+..+...+||.+.||+ +.||+||++|+..|.-|.+||.++ .+....+|+++|+. |.+|...
T Consensus 97 ~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~ 174 (521)
T KOG2075|consen 97 QKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAF 174 (521)
T ss_pred chhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHH
Confidence 345577778888999999999999984 699999999999999999999987 44446789999995 9999999
Q ss_pred HHHhcCCCccCCchhHhhHHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHHHhchhhHHH
Q 006971 98 AKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCI 177 (623)
Q Consensus 98 ~~FcY~~~i~It~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae~~~iv~rCi 177 (623)
++|+|+-.+.+-++||..++-||.-.-.+. |...|-+||+..+.. .+.+.-|.+|. .+.++-.++++|+
T Consensus 175 L~flYsdev~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~--~naf~~L~q~A---~lf~ep~Li~~c~ 243 (521)
T KOG2075|consen 175 LRFLYSDEVKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMA--DNAFLELFQRA---KLFDEPSLISICL 243 (521)
T ss_pred HHHHhcchhhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCC--hHHHHHHHHHH---HhhcCHHHHHHHH
Confidence 999999999999999999999999998988 999999999998753 45566666663 3455667889999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCcCCCCCCCCCCCccchhhhhhcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 006971 178 DAIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQK 257 (623)
Q Consensus 178 dsLa~kA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~Ls~d~f~rVI~am~~~g~~~e~I~~aL~~Yak~ 257 (623)
+.|....-. .+ ..-||-|+-.+ .|+|..|+..- ...+++-.+++|+..|++-
T Consensus 244 e~id~~~~~-al-------------------------~~EGf~did~~-~dt~~evl~r~-~l~~~e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 244 EVIDKSFED-AL-------------------------TPEGFCDIDST-RDTYEEVLRRD-TLEAREFRLFEAALKWAEA 295 (521)
T ss_pred HHhhhHHHh-hh-------------------------CccceeehhhH-HHHHHHHHhhc-ccchhHHHHHHHHHhhccC
Confidence 988654321 11 01134555444 78777776652 2345889999999999964
Q ss_pred h
Q 006971 258 S 258 (623)
Q Consensus 258 ~ 258 (623)
-
T Consensus 296 e 296 (521)
T KOG2075|consen 296 E 296 (521)
T ss_pred c
Confidence 3
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.08 E-value=7.5e-10 Score=108.68 Aligned_cols=170 Identities=15% Similarity=0.229 Sum_probs=130.0
Q ss_pred ccCcchHHHHhhHH---HHhhcCCCeeEEEEEC---CEEEeeccccccccChHHHHhhcCCCCCCCceEEeCCCCCCHHH
Q 006971 20 KKELLSTAMKRTSE---WIFSQEIPSDVTVHVG---GTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEA 93 (623)
Q Consensus 20 ~~~~~~~~~~~~~~---~~r~~~~~~DV~I~V~---~~~F~lHK~vLas~S~Yfr~lf~~~~e~~~~~I~L~~~PGgae~ 93 (623)
..|.|++|..|-.+ -+.+...++||++.++ +..+++||+|||++|++.+ |.+..+.+..+..+.|. .+++
T Consensus 42 keSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDa--d~Ea 117 (280)
T KOG4591|consen 42 KESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDA--DFEA 117 (280)
T ss_pred ccCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhccccc--CHHH
Confidence 46789999888743 6788899999999998 6799999999999999875 44443333446677888 4999
Q ss_pred HHHHHHHhcCCCccCCchh--HhhHHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHHHhc
Q 006971 94 FELAAKFCYGINFEINTEN--VAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVK 171 (623)
Q Consensus 94 Felv~~FcY~~~i~It~~N--V~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae~~~ 171 (623)
|..+++++||-+|++..+. .-.|+..|.-+|+.- |.++|+.=|...+ ...||..+..+||+++
T Consensus 118 ~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 118 FHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELN 182 (280)
T ss_pred HHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhh
Confidence 9999999999999998876 467888999999988 9999999888776 4779999999999986
Q ss_pred hhhHHHHHHHHHHhhcccC-CCCCCCCCCCCCcCCCCCCCCCCCccchhhhhhcCChHHHHHHHHH
Q 006971 172 LVGQCIDAIAYIACKENQF-SGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIA 236 (623)
Q Consensus 172 iv~rCidsLa~kA~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~Ls~d~f~rVI~a 236 (623)
. ..|. ..|.+-.. .|+ +---+||+.++..+.-|+|..
T Consensus 183 ~-----~qL~-n~~~eiIA~~W~----------------------dL~~a~FaqMs~aLLYklId~ 220 (280)
T KOG4591|consen 183 A-----RQLM-NVAAEIIAGAWD----------------------DLGKADFAQMSAALLYKLIDG 220 (280)
T ss_pred H-----HHHH-HHHHHHHHhhcc----------------------ccChHHHHhccHHHHHHHHcC
Confidence 4 1221 12222111 121 222578888998887777764
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.73 E-value=3.9e-08 Score=105.05 Aligned_cols=177 Identities=23% Similarity=0.254 Sum_probs=134.6
Q ss_pred HHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceE--EeCCCCCCHHHHHHHHHHhcCCCccCCc
Q 006971 34 WIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVI--EIPDVPGGAEAFELAAKFCYGINFEINT 110 (623)
Q Consensus 34 ~~r~~~~~~DV~I~V~~~~F~lHK~vLas~S~Yfr~lf~~~-~e~~~~~I--~L~~~PGgae~Felv~~FcY~~~i~It~ 110 (623)
-+..+|.-+||+|.+-|.+.++||.-| ..|+||.+||.+. +|++...| +|+|=.-+.++|..++.=.|..+|+|..
T Consensus 62 ~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l 140 (488)
T KOG4682|consen 62 NLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL 140 (488)
T ss_pred HHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH
Confidence 466789999999999999999999877 6799999999997 67666554 4554334699999999999999999999
Q ss_pred hhHhhHHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHHHhchhhHHHHHHHHHHhhc---
Q 006971 111 ENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKE--- 187 (623)
Q Consensus 111 ~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae~~~iv~rCidsLa~kA~~~--- 187 (623)
+-|..+++||.+||++. |+++|.+-+.+.+. .++-.+....+..||+ +.+-++.-.=
T Consensus 141 ~dv~gvlAaA~~lqldg------l~qrC~evMie~ls---------pkta~~yYea~ckYgl-----e~vk~kc~ewl~~ 200 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDG------LIQRCGEVMIETLS---------PKTACGYYEAACKYGL-----ESVKKKCLEWLLN 200 (488)
T ss_pred HHHHHHHHHHHHHHHhh------HHHHHHHHHHHhcC---------hhhhhHhhhhhhhhhh-----HHHHHHHHHHHHH
Confidence 99999999999999999 99999999999884 5577788899999987 4444433110
Q ss_pred ccCCCCCCCCCCCCCcCCCCCCCCCCCccchhhhhhcCChHHHHHHHHHHHhcCCC-chhHHHHHHHHH
Q 006971 188 NQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFK-QYALGPVLMLYA 255 (623)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~Ls~d~f~rVI~am~~~g~~-~e~I~~aL~~Ya 255 (623)
.+.+ . . . ..-|-.++++++..|+.+=..--+. |=.++..+..|.
T Consensus 201 nl~~--i-~------------------~---~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 201 NLMT--I-Q------------------N---VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred hhHh--h-h------------------h---HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 1110 0 0 0 1246678888877776553333333 556777777775
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.55 E-value=1.1e-07 Score=108.39 Aligned_cols=147 Identities=19% Similarity=0.257 Sum_probs=109.5
Q ss_pred cccCcchHHHHhhHHHHhhcCCCe--eEEEEE-CCEEEeeccccccccChHHHHhhcCC-CCCCCceEEeCCCCCCHHHH
Q 006971 19 KKKELLSTAMKRTSEWIFSQEIPS--DVTVHV-GGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAF 94 (623)
Q Consensus 19 ~~~~~~~~~~~~~~~~~r~~~~~~--DV~I~V-~~~~F~lHK~vLas~S~Yfr~lf~~~-~e~~~~~I~L~~~PGgae~F 94 (623)
.+.+++....+...+.+...+..| |+.|.. +|+.|+|||.+|++++.||..||... .|... |...++|-.+|.+
T Consensus 686 ~~~~~~n~ia~~~~N~l~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m 763 (1267)
T KOG0783|consen 686 PLLSLTNDIAQLYNNFLVLSDHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHM 763 (1267)
T ss_pred chhhcccHHHHHhcCeeEecCCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHH
Confidence 344555555555555554443332 444433 78889999999999999999999876 45544 5556666689999
Q ss_pred HHHHHHhc-CCCccC-----CchhHhhHHHhhhhhccccccccchHHHHHHHHHHHhhhhchhhHHHHHhhhhcHHHHHH
Q 006971 95 ELAAKFCY-GINFEI-----NTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAE 168 (623)
Q Consensus 95 elv~~FcY-~~~i~I-----t~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~sl~~L~~C~~l~~~Ae 168 (623)
+.+++|.| +-+.++ ..+=+..++..|+.|-+++ |.+.||.-|.+.+ .|++|-.|+.+|-
T Consensus 764 ~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaa 828 (1267)
T KOG0783|consen 764 SIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAA 828 (1267)
T ss_pred HHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHH
Confidence 99999999 444432 1223678888999999999 9999999999887 6999999999999
Q ss_pred Hhc---hhhHHHHHHHH
Q 006971 169 KVK---LVGQCIDAIAY 182 (623)
Q Consensus 169 ~~~---iv~rCidsLa~ 182 (623)
.|+ +-.+|+|-|-.
T Consensus 829 mY~ak~L~~~C~dfic~ 845 (1267)
T KOG0783|consen 829 MYHAKELYSRCIDFICH 845 (1267)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 986 56688876543
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.27 E-value=1.3e-06 Score=99.87 Aligned_cols=65 Identities=31% Similarity=0.514 Sum_probs=55.1
Q ss_pred CCCeeEEEEECCEEEeeccccccccChHHHHhhcCCCC-------------CCCceEEeCCCCCCHHHHHHHHHHhcCCC
Q 006971 39 EIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSE-------------ADLSVIEIPDVPGGAEAFELAAKFCYGIN 105 (623)
Q Consensus 39 ~~~~DV~I~V~~~~F~lHK~vLas~S~Yfr~lf~~~~e-------------~~~~~I~L~~~PGgae~Felv~~FcY~~~ 105 (623)
+-+.|||++||+.-|++||++|+++|++||+||..... +..+.|.+.++| |.+||+++.|+||..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 45679999999999999999999999999999986421 123466788998 899999999999875
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.79 E-value=2.2e-05 Score=83.06 Aligned_cols=93 Identities=25% Similarity=0.352 Sum_probs=76.9
Q ss_pred EEEEECC------EEEeeccccccccChHHHHhhcC---C-CCCCCceEEeC-CCCCCHHHHHHHHHHhcCCCccCCchh
Q 006971 44 VTVHVGG------TSFSLHKFPLVSKCGYIRKLVSV---S-SEADLSVIEIP-DVPGGAEAFELAAKFCYGINFEINTEN 112 (623)
Q Consensus 44 V~I~V~~------~~F~lHK~vLas~S~Yfr~lf~~---~-~e~~~~~I~L~-~~PGgae~Felv~~FcY~~~i~It~~N 112 (623)
|+|+|-| +.|.|.+.+|.+.=+||+..+.. . .+...-.|.++ |+ .+|+-+++|+++....||++|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666632 58999999999999999999964 2 22222233333 55 799999999999999999999
Q ss_pred HhhHHHhhhhhccccccccchHHHHHHHHHHHhh
Q 006971 113 VAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (623)
Q Consensus 113 V~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 146 (623)
|+.++-.|+||||++ |++.|-.|+..++
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999999 9999999997776
No 15
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.69 E-value=0.00059 Score=59.51 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=65.4
Q ss_pred hhcHHHHHHHhchhhHHHHHHHHHHhhc--ccCCCCCCCCCCCCCcCCCCCCCCCCCcc-chhhhhhcCChHHHHHHHHH
Q 006971 160 SQGLLPIAEKVKLVGQCIDAIAYIACKE--NQFSGSGRAESGTDNAISDMVSHPKTIVD-WWAEDLTVLRIDVFQRVLIA 236 (623)
Q Consensus 160 C~~l~~~Ae~~~iv~rCidsLa~kA~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-WW~EDl~~Ls~d~f~rVI~a 236 (623)
|.+++.+|+.|++ ..|..++-.- .+|. + ...++|..|+.+.+..++..
T Consensus 1 C~~i~~~A~~~~~-----~~L~~~~~~~i~~nf~------------------------~v~~~~~f~~L~~~~l~~iL~~ 51 (103)
T PF07707_consen 1 CLSIYRLAEKYGL-----EELAEACLRFIAKNFN------------------------EVSKSDEFLELPFDQLIEILSS 51 (103)
T ss_dssp HHHHHHHHHHTT------HHHHHHHHHHHHHTHH------------------------HHTTSHHHHCS-HHHHHHHHHT
T ss_pred ChhHHHHHHHcCh-----HHHHHHHHHHHHHHHH------------------------HHccchhhhcCCHHHHHHHHhc
Confidence 7788899999876 5555555332 1221 1 12578999999987777775
Q ss_pred HHhcCCCchhHHHHHHHHHHhhcccccccCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcCHHHHHHH
Q 006971 237 MMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVL 306 (623)
Q Consensus 237 m~~~g~~~e~I~~aL~~Yak~~l~~~~~~~~~~~~~~~~~~~~~r~LLEtIv~lLP~~k~~vs~~fL~~L 306 (623)
-.-...+|..|+++++.|+++....+. .....|++.|+. +.+|..+|...
T Consensus 52 ~~l~v~~E~~v~~av~~W~~~~~~~r~--------------~~~~~Ll~~iR~------~~l~~~~L~~~ 101 (103)
T PF07707_consen 52 DDLNVSSEDDVFEAVLRWLKHNPENRE--------------EHLKELLSCIRF------PLLSPEELQNV 101 (103)
T ss_dssp SS--ECTCCCHHHHHHHHHHCTHHHHT--------------TTHHHHHCCCHH------HCT-HHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHhCHHHHH--------------HHHHHHHHhCCc------ccCCHHHHHHH
Confidence 443334889999999999998866432 456788888883 35888888764
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.66 E-value=0.0013 Score=57.35 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=61.7
Q ss_pred EEEEECCEEEeecccccc-ccChHHHHhhcCC----CCCCCceEEeCCCCCCHHHHHHHHHHhcC-CCccCC-chhHhhH
Q 006971 44 VTVHVGGTSFSLHKFPLV-SKCGYIRKLVSVS----SEADLSVIEIPDVPGGAEAFELAAKFCYG-INFEIN-TENVAGL 116 (623)
Q Consensus 44 V~I~V~~~~F~lHK~vLa-s~S~Yfr~lf~~~----~e~~~~~I~L~~~PGgae~Felv~~FcY~-~~i~It-~~NV~~L 116 (623)
|+|.|||+.|.+-+..|. ....+|.+|+... .......+-|. = .|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-R--dp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-R--DPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-c--ChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999863 22334466553 2 58999999999999 777764 5678999
Q ss_pred HHhhhhhcccc
Q 006971 117 RCVAEYLEMTE 127 (623)
Q Consensus 117 ~cAA~~LqMte 127 (623)
+..|+|+++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999998
No 17
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.65 E-value=0.0037 Score=55.86 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=61.0
Q ss_pred EEEEE-CCEEEeeccccccccChHHHHhhcCCC-C-CCCceEEeCCCCCCHHHHHHHHHHhcCCC---------------
Q 006971 44 VTVHV-GGTSFSLHKFPLVSKCGYIRKLVSVSS-E-ADLSVIEIPDVPGGAEAFELAAKFCYGIN--------------- 105 (623)
Q Consensus 44 V~I~V-~~~~F~lHK~vLas~S~Yfr~lf~~~~-e-~~~~~I~L~~~PGgae~Felv~~FcY~~~--------------- 105 (623)
|++.- +|..|.+.+.+. ..|+-++.|+.+.. + .....|.|++|+ +.+++.+++||+--+
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 688999999866 68999999998742 1 122478999997 799999999998321
Q ss_pred ----ccCCchhHhhHHHhhhhhcc
Q 006971 106 ----FEINTENVAGLRCVAEYLEM 125 (623)
Q Consensus 106 ----i~It~~NV~~L~cAA~~LqM 125 (623)
+.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11667789999999999986
No 18
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0097 Score=60.90 Aligned_cols=94 Identities=21% Similarity=0.330 Sum_probs=77.1
Q ss_pred EEEEECCEEEeeccccccccChHHHHhhcCCC--CCC-CceEEeCCCCCCHHHHHHHHHHhcCCCccC--CchhHhhHHH
Q 006971 44 VTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSS--EAD-LSVIEIPDVPGGAEAFELAAKFCYGINFEI--NTENVAGLRC 118 (623)
Q Consensus 44 V~I~V~~~~F~lHK~vLas~S~Yfr~lf~~~~--e~~-~~~I~L~~~PGgae~Felv~~FcY~~~i~I--t~~NV~~L~c 118 (623)
|.+.|||..|..+|.-|--..|||+.|+...- +.+ ...|-|.- .|.=|+++++|+=.|.+.+ +..++.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 56899999999999999999999999999862 222 23355432 4799999999999887776 4457889999
Q ss_pred hhhhhccccccccchHHHHHHHHHHHhh
Q 006971 119 VAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (623)
Q Consensus 119 AA~~LqMte~~~~~NL~~~ce~FL~~~v 146 (623)
=|+|..+++ |++.|+.=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999999 9999999777653
No 19
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.36 E-value=0.0036 Score=64.90 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=63.9
Q ss_pred cchHHHHhhHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCCCCCC---CceEEeCCCCCCHHHHHHHHH
Q 006971 23 LLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEAD---LSVIEIPDVPGGAEAFELAAK 99 (623)
Q Consensus 23 ~~~~~~~~~~~~~r~~~~~~DV~I~V~~~~F~lHK~vLas~S~Yfr~lf~~~~e~~---~~~I~L~~~PGgae~Felv~~ 99 (623)
++.-...+..+-..+.....||-|......|++||+.|+++|++|+-+...+.+.. .+.|+.-+|. .++|+..++
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh 189 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLH 189 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHH
Confidence 34333334444455556788999999999999999999999999999988764332 3456777884 899999999
Q ss_pred HhcCCCcc
Q 006971 100 FCYGINFE 107 (623)
Q Consensus 100 FcY~~~i~ 107 (623)
+.|+|+.-
T Consensus 190 ~l~tgEfg 197 (401)
T KOG2838|consen 190 SLITGEFG 197 (401)
T ss_pred HHHhcccc
Confidence 99999764
No 20
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.82 E-value=0.031 Score=49.83 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=60.8
Q ss_pred CCEEEeeccccccccChHHHHhhcCC---CCCCCceEEeCCCCCCHHHHHHHHHHh-----cCC------CccCCchhHh
Q 006971 49 GGTSFSLHKFPLVSKCGYIRKLVSVS---SEADLSVIEIPDVPGGAEAFELAAKFC-----YGI------NFEINTENVA 114 (623)
Q Consensus 49 ~~~~F~lHK~vLas~S~Yfr~lf~~~---~e~~~~~I~L~~~PGgae~Felv~~Fc-----Y~~------~i~It~~NV~ 114 (623)
+|.+|-+-|- .|--||-+|+||.+. .+....+|.+.+|| +..++.+..|. |++ +++|-++=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 5788988655 567799999999975 45566789999998 89999998875 444 4788999999
Q ss_pred hHHHhhhhhcc
Q 006971 115 GLRCVAEYLEM 125 (623)
Q Consensus 115 ~L~cAA~~LqM 125 (623)
.|+.||+||+.
T Consensus 102 eLL~aAn~Lec 112 (112)
T KOG3473|consen 102 ELLMAANYLEC 112 (112)
T ss_pred HHHHHhhhhcC
Confidence 99999999973
No 21
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.21 E-value=0.027 Score=48.36 Aligned_cols=65 Identities=9% Similarity=0.098 Sum_probs=48.2
Q ss_pred hhhhcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcccccccCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcC
Q 006971 220 EDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMS 299 (623)
Q Consensus 220 EDl~~Ls~d~f~rVI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~~~~~~~~~~~~~~~~~r~LLEtIv~lLP~~k~~vs 299 (623)
++|..|+.+.+..++..-.-....|+.|+++++.|+++.... . .....|++.|+ + +.+|
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~--------------~-~~~~~ll~~ir--~----~~~~ 93 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPER--------------R-RHLPELLSHVR--F----PLLS 93 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHH--------------H-HHHHHHHHhCC--C----CCCC
Confidence 789999999888777765555457899999999999876421 1 24567888888 4 3578
Q ss_pred HHHHHH
Q 006971 300 VSFLSV 305 (623)
Q Consensus 300 ~~fL~~ 305 (623)
..+|.+
T Consensus 94 ~~~l~~ 99 (101)
T smart00875 94 PEYLLE 99 (101)
T ss_pred HHHHHh
Confidence 877754
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.03 E-value=0.16 Score=41.31 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=43.4
Q ss_pred EEEEE-CCEEEeeccccccccChHHHHhhcCCCCCCCceEEeCCCCCCHHHHHHHHHHhc
Q 006971 44 VTVHV-GGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCY 102 (623)
Q Consensus 44 V~I~V-~~~~F~lHK~vLas~S~Yfr~lf~~~~e~~~~~I~L~~~PGgae~Felv~~FcY 102 (623)
|+|.- +|+.|.+.+.+. -.|+.++.|+....+... .|.|++|+ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 45554 689999988765 589999999987533322 79999996 799999999997
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.25 Score=48.26 Aligned_cols=89 Identities=13% Similarity=0.263 Sum_probs=69.6
Q ss_pred CCEEEeeccccccccChHHHHhhcCCC-CCCCceEEeCCCCCCHHHHHHHHHHhcCCC----------------------
Q 006971 49 GGTSFSLHKFPLVSKCGYIRKLVSVSS-EADLSVIEIPDVPGGAEAFELAAKFCYGIN---------------------- 105 (623)
Q Consensus 49 ~~~~F~lHK~vLas~S~Yfr~lf~~~~-e~~~~~I~L~~~PGgae~Felv~~FcY~~~---------------------- 105 (623)
+|+.|.+-..+ |..|.-++.++.+.. ......|-|+.|. +.+|.+|+.|||--+
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 68899887664 467889999888652 1111468888885 799999999999622
Q ss_pred ---ccCCchhHhhHHHhhhhhccccccccchHHHHHHHHHHHhh
Q 006971 106 ---FEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (623)
Q Consensus 106 ---i~It~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 146 (623)
+.+...++..|.-||.||+|.. |+..||......+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHH
Confidence 1244468899999999999999 9999999998876
No 24
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.31 E-value=1.5 Score=46.71 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=70.0
Q ss_pred hhcCCCeeEEEEECCEEEeeccccccccCh-HHHHhhcCC----CCCCCceEEe-CCCCCCHHHHHHHHHHhcCCCccCC
Q 006971 36 FSQEIPSDVTVHVGGTSFSLHKFPLVSKCG-YIRKLVSVS----SEADLSVIEI-PDVPGGAEAFELAAKFCYGINFEIN 109 (623)
Q Consensus 36 r~~~~~~DV~I~V~~~~F~lHK~vLas~S~-Yfr~lf~~~----~e~~~~~I~L-~~~PGgae~Felv~~FcY~~~i~It 109 (623)
+..|-.--++..|++..|-.-+++|-+.-. -+-.||... ...+..+.++ .|| +...|..+++|--+|.|...
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 556666678999999999999999977643 344666653 2223346676 577 68999999999999988875
Q ss_pred ch-hHhhHHHhhhhhcccccc
Q 006971 110 TE-NVAGLRCVAEYLEMTEDY 129 (623)
Q Consensus 110 ~~-NV~~L~cAA~~LqMte~~ 129 (623)
+. .|-.|+.|.+||-++=++
T Consensus 168 ~~vSvpELrEACDYLlipF~a 188 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNA 188 (438)
T ss_pred CCCchHHHHhhcceEEeeccc
Confidence 54 689999999999988544
No 25
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.83 E-value=0.91 Score=49.59 Aligned_cols=74 Identities=12% Similarity=0.219 Sum_probs=57.9
Q ss_pred EEEeeccccccccChHHHHhhcCC-CCCC-Cc---eEEeCCCCCCHHHHHHHHHHhcCCCccCCchhHhhHHHhhhhhcc
Q 006971 51 TSFSLHKFPLVSKCGYIRKLVSVS-SEAD-LS---VIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEM 125 (623)
Q Consensus 51 ~~F~lHK~vLas~S~Yfr~lf~~~-~e~~-~~---~I~L~~~PGgae~Felv~~FcY~~~i~It~~NV~~L~cAA~~LqM 125 (623)
..+|+|..++ +++.||+.||+++ .|+. +. ...|+.+ .....|.+++|.|+-+-+|-++-...++--|+.|-+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~--~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSL--ADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchH--HHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999988 6788999999997 4422 22 2334445 367899999999999999999988888888888877
Q ss_pred cc
Q 006971 126 TE 127 (623)
Q Consensus 126 te 127 (623)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 65
No 26
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.41 E-value=0.66 Score=48.66 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=40.4
Q ss_pred EEeeccccccccChHHHHhhcCC----CC------CCCceEEeCCCCCCHHHHHH-HHHHhcCCCccCCc
Q 006971 52 SFSLHKFPLVSKCGYIRKLVSVS----SE------ADLSVIEIPDVPGGAEAFEL-AAKFCYGINFEINT 110 (623)
Q Consensus 52 ~F~lHK~vLas~S~Yfr~lf~~~----~e------~~~~~I~L~~~PGgae~Fel-v~~FcY~~~i~It~ 110 (623)
++.+||.+.+++|++||.++... .| ....+|.+.+.- =|.+|.. .+.|+||-.++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I-~PkafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELI-FPKAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhh-cchhhhhhhhhhheecccchhh
Confidence 57899999999999999987532 22 123567775421 2567764 57889998887654
No 27
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=83.60 E-value=3 Score=46.33 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=61.0
Q ss_pred EEEEECCEEEeeccccccccC--hHHHHhhcCC--CCCCCc-eEEeCCCCCCHHHHHHHHHHhcCCCccCCchhHhhHHH
Q 006971 44 VTVHVGGTSFSLHKFPLVSKC--GYIRKLVSVS--SEADLS-VIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRC 118 (623)
Q Consensus 44 V~I~V~~~~F~lHK~vLas~S--~Yfr~lf~~~--~e~~~~-~I~L~~~PGgae~Felv~~FcY~~~i~It~~NV~~L~c 118 (623)
|.+.|||+.|.--+.-|+... .+|-+|+++. ...... .|-|. -.|+.|..+++|.-|+++.+..--...|+-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 578999999999998887765 6999999854 111111 24332 248999999999999999995544445554
Q ss_pred -hhhhhcccc
Q 006971 119 -VAEYLEMTE 127 (623)
Q Consensus 119 -AA~~LqMte 127 (623)
=|.|+++++
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 899999998
No 28
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=82.91 E-value=2 Score=36.58 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=28.5
Q ss_pred cCCchhHhhHHHhhhhhccccccccchHHHHHHHHHHHhh
Q 006971 107 EINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (623)
Q Consensus 107 ~It~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 146 (623)
.++...+..|+.||.||+|.. |++.|+.++...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 446778999999999999999 9999999998876
No 29
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=75.40 E-value=9.2 Score=39.42 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=68.0
Q ss_pred EEEEECCEEEeeccccccccC--hHHHHhhcCC----CCCCCceEEeCCCCCCHHHHHHHHHHhcCCCccC-CchhHhhH
Q 006971 44 VTVHVGGTSFSLHKFPLVSKC--GYIRKLVSVS----SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEI-NTENVAGL 116 (623)
Q Consensus 44 V~I~V~~~~F~lHK~vLas~S--~Yfr~lf~~~----~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~I-t~~NV~~L 116 (623)
|.+.+||+.|.--..-|.-+= .-+-+||... .+.+..-+-|.- .|.-||-++.|.-.|.|.. +.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 567899999998888777773 4788999874 233444455433 4799999999999887754 45589999
Q ss_pred HHhhhhhccccccccchHHHHHHH
Q 006971 117 RCVAEYLEMTEDYAVGNLVGRAEA 140 (623)
Q Consensus 117 ~cAA~~LqMte~~~~~NL~~~ce~ 140 (623)
+.+|.|+|+-. |++..|+
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999988 7777666
No 30
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.87 E-value=4.1 Score=42.49 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=69.3
Q ss_pred CEEEeeccccccccChHHHHhhcCC-CCCCCceEEeCCCCCCHHHHHHHHHHhcCCCccCCchhHh---hHHHhhhhhcc
Q 006971 50 GTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVA---GLRCVAEYLEM 125 (623)
Q Consensus 50 ~~~F~lHK~vLas~S~Yfr~lf~~~-~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~It~~NV~---~L~cAA~~LqM 125 (623)
+..+..|+.+++++|+-|+.|+... .+.....+.+.+. +++.|+.+..|.|...-..+..++. .++++|.-.+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~--~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEE--KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccccc--chhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 5569999999999999999999876 2333344566666 4789999999999865555555554 78888877777
Q ss_pred ccccccchHHHHHHHHHHHhh
Q 006971 126 TEDYAVGNLVGRAEAYLNEVA 146 (623)
Q Consensus 126 te~~~~~NL~~~ce~FL~~~v 146 (623)
.. |...|...|.+.+
T Consensus 187 ~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 RH------LKLACMPVLLSLI 201 (297)
T ss_pred HH------HHHHHHHHHHHHH
Confidence 77 9999999998875
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=71.89 E-value=1.5 Score=47.97 Aligned_cols=95 Identities=14% Similarity=0.027 Sum_probs=58.2
Q ss_pred HHhhHHHHhhcCCC--eeEEEEE-CCEEEeeccccccccChHHHHhhcCCCCCCCceE-EeCCCCCCHHHHHHHHHHhcC
Q 006971 28 MKRTSEWIFSQEIP--SDVTVHV-GGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVI-EIPDVPGGAEAFELAAKFCYG 103 (623)
Q Consensus 28 ~~~~~~~~r~~~~~--~DV~I~V-~~~~F~lHK~vLas~S~Yfr~lf~~~~e~~~~~I-~L~~~PGgae~Felv~~FcY~ 103 (623)
...-++-++.+++. .|++..+ +|..|-+||+.|+++|.||..-+..---+ ..+| .+.-+ +.+|+..++|.|-
T Consensus 134 aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~-~heI~~~~v~---~~~f~~flk~lyl 209 (516)
T KOG0511|consen 134 AAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ-GHEIEAHRVI---LSAFSPFLKQLYL 209 (516)
T ss_pred chHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc-cCchhhhhhh---HhhhhHHHHHHHH
Confidence 34445667777773 3888776 48899999999999988776433221101 1234 33445 6999999999996
Q ss_pred CCccCCchhHhhHHHhhhhhccc
Q 006971 104 INFEINTENVAGLRCVAEYLEMT 126 (623)
Q Consensus 104 ~~i~It~~NV~~L~cAA~~LqMt 126 (623)
..=.+-+.--.+|+.-..-++..
T Consensus 210 ~~na~~~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 210 NTNAEWKDQYNALLSIEVKFSKE 232 (516)
T ss_pred hhhhhhhhHHHHHHhhhhhccHH
Confidence 52222222224455554445443
No 32
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.11 E-value=20 Score=34.04 Aligned_cols=93 Identities=15% Similarity=0.280 Sum_probs=66.3
Q ss_pred EEEE-ECCEEEeeccccccccChHHHHhhcCCCCCCCceEEeCCCCCCHHHHHHHHHHhcCCCcc---------------
Q 006971 44 VTVH-VGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFE--------------- 107 (623)
Q Consensus 44 V~I~-V~~~~F~lHK~vLas~S~Yfr~lf~~~~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~--------------- 107 (623)
|.|. .+|+.|.+.+. .|-+|=.++.|+....+.+. .+.++.+ .+.+|..+.+||---+=.
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~-p~p~pnV--rSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACNY-PIPAPNV--RSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccCC-CCcccch--hHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 4443 56899999876 57889999998887654432 2445566 489999999999632111
Q ss_pred ----------CCchhHhhHHHhhhhhccccccccchHHHHHHHHHHHhh
Q 006971 108 ----------INTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (623)
Q Consensus 108 ----------It~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 146 (623)
+...-.-.+.-||.||++.. |++.||.-..+.+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 12233566778999999999 9999998888876
No 33
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=56.16 E-value=7.1 Score=34.73 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=33.0
Q ss_pred cCCCccccchhHHHHHHHHHHhCCCCCHHHHhhhhcccccccC
Q 006971 422 IPEQSRITEDGMYRAIDIYLKAHPTLSDMERKKVCSLMDCQKL 464 (623)
Q Consensus 422 lP~~aR~~~DgLYrAIDiYLk~Hp~lse~Er~~lC~~~dc~KL 464 (623)
+|++-.-....+|+|+..||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4444456678999999999999987776 88888888776663
No 34
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=54.47 E-value=48 Score=32.96 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=71.7
Q ss_pred eeEEEEECCEEEeeccccccccC-hHHHHhhcCCC----CCCCceEEeCCCCCCHHHHHHHHHHhcCCCccCCchhHhhH
Q 006971 42 SDVTVHVGGTSFSLHKFPLVSKC-GYIRKLVSVSS----EADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGL 116 (623)
Q Consensus 42 ~DV~I~V~~~~F~lHK~vLas~S-~Yfr~lf~~~~----e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~It~~NV~~L 116 (623)
.=|-+.|||..|.--|.-|.--+ .++.+++.... +.+..---|-|= +|.-|.-+++|.--|++-++.--=+.+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGv 98 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGV 98 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhhhhhhcc
Confidence 34567899999999999998887 56666666542 222222333333 479999999999999999998777788
Q ss_pred HHhhhhhccccccccchHHHHHHHHHHHhh
Q 006971 117 RCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (623)
Q Consensus 117 ~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 146 (623)
+.-|+|...+. |+....+-+.+..
T Consensus 99 L~EAefyn~~~------li~likd~i~dRd 122 (210)
T KOG2715|consen 99 LEEAEFYNDPS------LIQLIKDRIQDRD 122 (210)
T ss_pred chhhhccCChH------HHHHHHHHHHHHh
Confidence 89999999998 7777666665543
No 35
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=53.07 E-value=12 Score=25.07 Aligned_cols=15 Identities=13% Similarity=0.601 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhh
Q 006971 541 ELLKMKMKLKEIEKS 555 (623)
Q Consensus 541 el~~m~~rv~eLek~ 555 (623)
||++.|.|+++||++
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 789999999999987
No 36
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=32.34 E-value=1.6e+02 Score=30.44 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=57.4
Q ss_pred EEEEECCEEEeeccccccc-cChHHHHhhcCC---CCCCCceEEeCCCCCCHHHHHHHHHHhcCCCccCCc--hhHhhHH
Q 006971 44 VTVHVGGTSFSLHKFPLVS-KCGYIRKLVSVS---SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINT--ENVAGLR 117 (623)
Q Consensus 44 V~I~V~~~~F~lHK~vLas-~S~Yfr~lf~~~---~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i~It~--~NV~~L~ 117 (623)
|.|.|||..|.--..-|.. .-..+.+||++. .........|. =+ ...|.-+++|.=+-.+.+.. .++..|.
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID-RD--G~lFRyvL~~LRt~~l~lpe~f~e~~~L~ 87 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID-RD--GFLFRYVLDYLRTKALLLPEDFAEVERLV 87 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc-CC--cchHHHHHHHhcccccccchhhhhHHHHH
Confidence 5789999988843332222 236788888853 11222345553 12 36899999999997777777 6999999
Q ss_pred Hhhhhhcccc
Q 006971 118 CVAEYLEMTE 127 (623)
Q Consensus 118 cAA~~LqMte 127 (623)
.=|+|.|++.
T Consensus 88 rEA~f~~l~~ 97 (221)
T KOG2723|consen 88 REAEFFQLEA 97 (221)
T ss_pred HHHHHHcccc
Confidence 9999999997
No 37
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=31.93 E-value=46 Score=36.13 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=25.8
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 006971 526 NELSSLRRENEDLKIELLKMKMKLKEIEKS 555 (623)
Q Consensus 526 ~~~~~~~ren~~Lk~el~~m~~rv~eLek~ 555 (623)
++-..++.||..||.|.+.+|.+|..||.+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999999999999887
No 38
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=27.71 E-value=44 Score=27.32 Aligned_cols=19 Identities=16% Similarity=0.545 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHhCCCCCH
Q 006971 431 DGMYRAIDIYLKAHPTLSD 449 (623)
Q Consensus 431 DgLYrAIDiYLk~Hp~lse 449 (623)
--||.|+.-||+.||+-+.
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 4599999999999998765
No 39
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.53 E-value=65 Score=24.96 Aligned_cols=23 Identities=48% Similarity=0.715 Sum_probs=0.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHH
Q 006971 527 ELSSLRRENEDLKIELLKMKMKL 549 (623)
Q Consensus 527 ~~~~~~ren~~Lk~el~~m~~rv 549 (623)
++.++.+||+.|+.++..++.++
T Consensus 20 ~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 20 EYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
No 40
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=26.43 E-value=48 Score=33.78 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=25.6
Q ss_pred HhcC--CCccccchhHHHHHHHHHHhCCCCCHHHHh
Q 006971 420 ELIP--EQSRITEDGMYRAIDIYLKAHPTLSDMERK 453 (623)
Q Consensus 420 e~lP--~~aR~~~DgLYrAIDiYLk~Hp~lse~Er~ 453 (623)
+-+| +..+..-+|=|+||.-|||.||+==|.++.
T Consensus 184 ~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 184 NDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 3355 555667899999999999999975555543
No 41
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.36 E-value=82 Score=25.93 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhh
Q 006971 530 SLRRENEDLKIELLKMKMKLKEIEKS 555 (623)
Q Consensus 530 ~~~ren~~Lk~el~~m~~rv~eLek~ 555 (623)
.++.|.+.||..+..+..|+.+||.|
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999988
No 42
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.89 E-value=67 Score=29.40 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=25.8
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 006971 527 ELSSLRRENEDLKIELLKMKMKLKEIEKS 555 (623)
Q Consensus 527 ~~~~~~ren~~Lk~el~~m~~rv~eLek~ 555 (623)
.+..+..||..|+.|-+.+|.|+.+++++
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~ 58 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEELEQE 58 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999999999873
No 43
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.20 E-value=4e+02 Score=31.60 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=55.5
Q ss_pred CCCchhHHHHHHHHHHHhhhhcCCCCCChHHHHHHHHhcCCCccccc--hhHHHHHHHHHHhCCCCCHHHHh
Q 006971 384 SSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITE--DGMYRAIDIYLKAHPTLSDMERK 453 (623)
Q Consensus 384 ~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR~~~--DgLYrAIDiYLk~Hp~lse~Er~ 453 (623)
+|.+....|+|.-++.-|. -||..|++++=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+
T Consensus 298 tp~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 298 TPAPETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERK 367 (652)
T ss_pred CCChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888888887774 79999999998888888888888777 89999999999877777766654
No 44
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=24.69 E-value=1.9e+02 Score=33.05 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=60.0
Q ss_pred CCCeeEEEEECCEEEeecccccccc-ChHHHHhhcCC-----------CCCCCceEEeCCCCCCHHHHHHHHHHhcCCCc
Q 006971 39 EIPSDVTVHVGGTSFSLHKFPLVSK-CGYIRKLVSVS-----------SEADLSVIEIPDVPGGAEAFELAAKFCYGINF 106 (623)
Q Consensus 39 ~~~~DV~I~V~~~~F~lHK~vLas~-S~Yfr~lf~~~-----------~e~~~~~I~L~~~PGgae~Felv~~FcY~~~i 106 (623)
....-|.|+|||..+.+-+..|... =.++.++.... -+....+.-+.- .|.+|..|++|-+||++
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR---~P~~F~~Vl~fYrtGkL 104 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDR---HPGAFAYVLNFYRTGKL 104 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeecc---ChHHHHHHHHHHhcCee
Confidence 4455789999999999887766552 12344444311 122334555443 47899999999999999
Q ss_pred cCCchhHhhHH--HhhhhhccccccccchHHHHHHH
Q 006971 107 EINTENVAGLR--CVAEYLEMTEDYAVGNLVGRAEA 140 (623)
Q Consensus 107 ~It~~NV~~L~--cAA~~LqMte~~~~~NL~~~ce~ 140 (623)
.. +.+|..+. .=-+|.++++. -++.||.
T Consensus 105 H~-p~~vC~~~F~eEL~yWgI~~~-----~le~CC~ 134 (477)
T KOG3713|consen 105 HV-PADVCPLSFEEELDYWGIDEA-----HLESCCW 134 (477)
T ss_pred cc-ccccchHHHHHHHHHhCCChh-----hhhHHhH
Confidence 98 45554443 33468888773 5666654
No 45
>PRK14127 cell division protein GpsB; Provisional
Probab=24.62 E-value=84 Score=28.95 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=26.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhhhhc
Q 006971 527 ELSSLRRENEDLKIELLKMKMKLKEIEKSSA 557 (623)
Q Consensus 527 ~~~~~~ren~~Lk~el~~m~~rv~eLek~~~ 557 (623)
.|..+.+||..|+.++.+++.++.+++....
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566789999999999999999999998733
No 46
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=22.41 E-value=62 Score=39.33 Aligned_cols=75 Identities=27% Similarity=0.514 Sum_probs=50.1
Q ss_pred cccCCCCCCcccchhHHHHHHHHHHccccCCCCcccCCCCCCCCCCchhHHHHHHHHHHHhhhhcCCCCCChHHHHHHHH
Q 006971 341 IPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAE 420 (623)
Q Consensus 341 ips~~~~~~~lyDvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae 420 (623)
||...|+ +.+.+.-++++|-..-. +|.|=.+..+|..+.+..|..+++
T Consensus 253 LP~Lt~G-----~~e~m~~Lv~~F~p~l~---------------------------f~~~D~~~~~~~~~~Le~F~~i~~ 300 (802)
T PF13764_consen 253 LPFLTYG-----NEEKMDALVEHFKPYLD---------------------------FDKFDEEHSPDEQFKLECFCEIAE 300 (802)
T ss_pred hhHHhcC-----CHHHHHHHHHHHHHhcC---------------------------hhhcccccCchHHHHHHHHHHHHh
Confidence 4655433 67889999999953211 233333445666788999999999
Q ss_pred hcCCCc--c-----ccchhHHH-HHHHHHHhCCCC
Q 006971 421 LIPEQS--R-----ITEDGMYR-AIDIYLKAHPTL 447 (623)
Q Consensus 421 ~lP~~a--R-----~~~DgLYr-AIDiYLk~Hp~l 447 (623)
.+|.++ . ..+=|++. |++.-++.+|..
T Consensus 301 ~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 301 GIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred cCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence 999888 2 34556776 888445566765
No 47
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.58 E-value=1.3e+02 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.557 Sum_probs=19.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Q 006971 528 LSSLRRENEDLKIELLKMKMKLKEI 552 (623)
Q Consensus 528 ~~~~~ren~~Lk~el~~m~~rv~eL 552 (623)
..++++||++++.++++|...|.+|
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888877665
No 48
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.58 E-value=1.1e+02 Score=29.48 Aligned_cols=29 Identities=45% Similarity=0.588 Sum_probs=25.8
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 006971 527 ELSSLRRENEDLKIELLKMKMKLKEIEKS 555 (623)
Q Consensus 527 ~~~~~~ren~~Lk~el~~m~~rv~eLek~ 555 (623)
+..+++.|++.|-.+++.|+.||.|||.-
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999987
No 49
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=20.24 E-value=69 Score=27.73 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHhCCC
Q 006971 431 DGMYRAIDIYLKAHPT 446 (623)
Q Consensus 431 DgLYrAIDiYLk~Hp~ 446 (623)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999974
Done!