Your job contains 1 sequence.
>006973
MDKTVSPDAISTILSNPSPDSSSDIPEIVVQVLDLKLTGNRYMFNASDGKKRLKAILPSN
LSSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKCEVVSPALEMEIKIEVKSDESG
IIFKPKQEDEVKKDGPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSL
NPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRF
QLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDEL
GRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATN
VGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKG
TSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQAM
WYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAER
IIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAP
VDFAAESKFLLEEISKKVSHQNA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006973
(623 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2142808 - symbol:RPA70B "RPA70-kDa subunit B" ... 1917 1.7e-233 2
TAIR|locus:2173527 - symbol:RPA70D species:3702 "Arabidop... 2196 1.5e-227 1
TAIR|locus:2054577 - symbol:RPA1A "replication protein A ... 772 1.3e-84 2
TAIR|locus:2163553 - symbol:RPA70C species:3702 "Arabidop... 759 6.5e-83 2
UNIPROTKB|Q9AVL8 - symbol:OsRPA70a "Replication protein A... 739 5.8e-80 2
TAIR|locus:2134766 - symbol:AT4G19130 species:3702 "Arabi... 737 5.2e-79 2
POMBASE|SPBC660.13c - symbol:ssb1 "DNA replication factor... 764 8.1e-76 1
RGD|1307376 - symbol:Rpa1 "replication protein A1" specie... 530 5.3e-73 2
UNIPROTKB|P27694 - symbol:RPA1 "Replication protein A 70 ... 737 5.9e-73 1
UNIPROTKB|Q65XV7 - symbol:P0016H04.11 "Os05g0111000 prote... 698 8.6e-73 2
MGI|MGI:1915525 - symbol:Rpa1 "replication protein A1" sp... 730 3.2e-72 1
UNIPROTKB|Q0VCV0 - symbol:RPA1 "Replication protein A1, 7... 729 4.1e-72 1
UNIPROTKB|F1RHH4 - symbol:RPA1 "Uncharacterized protein" ... 728 5.3e-72 1
CGD|CAL0004564 - symbol:RFA1 species:5476 "Candida albica... 720 3.7e-71 1
UNIPROTKB|E2R436 - symbol:RPA1 "Uncharacterized protein" ... 715 1.3e-70 1
UNIPROTKB|I3LHB2 - symbol:RPA1 "Uncharacterized protein" ... 712 2.6e-70 1
FB|FBgn0010173 - symbol:RpA-70 "Replication Protein A 70"... 705 1.4e-69 1
SGD|S000000065 - symbol:RFA1 "Subunit of heterotrimeric R... 699 6.3e-69 1
UNIPROTKB|Q5ZJJ2 - symbol:RPA1 "Replication protein A 70 ... 684 2.4e-67 1
ZFIN|ZDB-GENE-030912-3 - symbol:rpa1 "replication protein... 676 1.7e-66 1
ASPGD|ASPL0000065893 - symbol:AN7423 species:162425 "Emer... 640 1.1e-62 1
UNIPROTKB|I3LSJ9 - symbol:I3LSJ9 "Uncharacterized protein... 459 6.9e-53 2
GENEDB_PFALCIPARUM|PFD0470c - symbol:PFD0470c "replicatio... 489 1.6e-45 1
UNIPROTKB|Q9U0J0 - symbol:PFD0470c "Replication factor a ... 489 1.6e-45 1
WB|WBGene00017546 - symbol:rpa-1 species:6239 "Caenorhabd... 458 2.2e-43 1
UNIPROTKB|Q19537 - symbol:rpa-1 "Probable replication fac... 458 2.2e-43 1
DICTYBASE|DDB_G0289513 - symbol:rfa1 "putative replicatio... 325 3.0e-26 1
TAIR|locus:2011521 - symbol:AT1G52950 "AT1G52950" species... 248 7.0e-18 1
WB|WBGene00019858 - symbol:R03H10.6 species:6239 "Caenorh... 138 2.9e-06 1
MGI|MGI:1922428 - symbol:Meiob "meiosis specific with OB ... 137 7.9e-06 1
RGD|1583204 - symbol:Meiob "meiosis specific with OB doma... 136 1.0e-05 1
RGD|1590524 - symbol:LOC681837 "similar to holdem CG15329... 136 1.0e-05 1
TAIR|locus:1005716636 - symbol:AT2G05642 "AT2G05642" spec... 98 0.00089 2
>TAIR|locus:2142808 [details] [associations]
symbol:RPA70B "RPA70-kDa subunit B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006260 "DNA replication"
evidence=ISS;RCA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0010224 "response to UV-B" evidence=IMP] [GO:0000278 "mitotic
cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009555 "pollen development" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0016568 "chromatin
modification" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010224
EMBL:AL133421 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 HSSP:P27694
ProtClustDB:CLSN2686716 IPI:IPI00535797 PIR:T45627
RefSeq:NP_196419.1 UniGene:At.54774 ProteinModelPortal:Q9SD82
SMR:Q9SD82 STRING:Q9SD82 EnsemblPlants:AT5G08020.1 GeneID:830696
KEGG:ath:AT5G08020 TAIR:At5g08020 InParanoid:Q9SD82 OMA:VVRISEF
PhylomeDB:Q9SD82 Genevestigator:Q9SD82 Uniprot:Q9SD82
Length = 604
Score = 1917 (679.9 bits), Expect = 1.7e-233, Sum P(2) = 1.7e-233
Identities = 354/497 (71%), Positives = 423/497 (85%)
Query: 128 EDEVK---KDGPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQ 184
+ E+K K GI+LKPK E VAKSA+QI+ +Q GN APAAR+AMTRRVHPLVSLNPYQ
Sbjct: 108 DSEIKAEIKASTGIMLKPKHEFVAKSASQIINEQRGNAAPAARMAMTRRVHPLVSLNPYQ 167
Query: 185 GNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGK 244
G+WTIKVRVT+KG MRTYKNARGEGCVFNVELTDE+GTQIQATMFN AARKFYDRF++GK
Sbjct: 168 GSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKFYDRFEMGK 227
Query: 245 VYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYV 304
VYYISRG+L++ANKQFKTVQNDYEM F P+TKFNFVPIDELG YV
Sbjct: 228 VYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDELGTYV 287
Query: 305 NGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQE 364
N +L+D+IGVVQ+VSPTMSIRRK++NEM+PKRDIT+ADETK+TV VSLWN+LAT +GQE
Sbjct: 288 NQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIGQE 347
Query: 365 LLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMA 424
LLD AD P++AIKSLKVG FQG+SLST+ RS V+++P+ PEA KLKSWY++EGK TSM+
Sbjct: 348 LLDMADNHPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDAEGKETSMS 407
Query: 425 SIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQAMWYRA 484
+IGSG+ S A NG+RSMYSDRV L+HITSNPSLG+EKPVFFS +AYIS IKPDQ MWYRA
Sbjct: 408 AIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAYISFIKPDQTMWYRA 467
Query: 485 CKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGC 544
CKTCNKKVT+A+ SGYWCE CQK D+ECSLRYIM +V D +GE W+S FN+EAE+IIGC
Sbjct: 468 CKTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEAEKIIGC 527
Query: 545 SADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFA 604
+AD+LN+LKS+ G+ N +Q KLKE TW HL R+SV+QQEYN+EKRQR+TVR V+P+DFA
Sbjct: 528 TADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVRGVSPIDFA 587
Query: 605 AESKFLLEEISKKVSHQ 621
AE++ LL++ISK + Q
Sbjct: 588 AETRLLLQDISKNKTSQ 604
Score = 358 (131.1 bits), Expect = 1.7e-233, Sum P(2) = 1.7e-233
Identities = 70/129 (54%), Positives = 97/129 (75%)
Query: 1 MDKTVSPDAISTILXXXXXXXXXXIPEIVVQVLDLKLTGNRYMFNASDGKKRLKAILPSN 60
M+ +V+ D I+T+L PEIVVQV+DLK GNRY F+A+DGK ++KA+LP+
Sbjct: 1 MENSVTQDGIATVLANQSLDSSSVRPEIVVQVVDLKPAGNRYTFSANDGKMKIKAMLPAT 60
Query: 61 LSSEVISGNIQNKGLIRLLDYALNEIPTKSE-KYLIVTKCEVVSPALEMEIKIEVKSDES 119
L+S++ISG IQN GLIRLL+Y +N+IP KSE KY+++TKCE V+ AL+ EIK E+K+ +
Sbjct: 61 LTSDIISGKIQNLGLIRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEIKAS-T 119
Query: 120 GIIFKPKQE 128
GI+ KPK E
Sbjct: 120 GIMLKPKHE 128
>TAIR|locus:2173527 [details] [associations]
symbol:RPA70D species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0005634 EMBL:CP002688 GO:GO:0003677 GO:GO:0006260
GO:GO:0004386 EMBL:AB006696 EMBL:AB008269 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646
KO:K07466 OMA:IKARVSY TIGRFAMs:TIGR00617 HOGENOM:HOG000162322
HSSP:P27694 EMBL:BT003950 IPI:IPI00525740 RefSeq:NP_200908.1
UniGene:At.29131 ProteinModelPortal:Q9FME0 SMR:Q9FME0 STRING:Q9FME0
EnsemblPlants:AT5G61000.1 GeneID:836221 KEGG:ath:AT5G61000
TAIR:At5g61000 InParanoid:Q9FME0 PhylomeDB:Q9FME0
ProtClustDB:CLSN2686716 ArrayExpress:Q9FME0 Genevestigator:Q9FME0
Uniprot:Q9FME0
Length = 629
Score = 2196 (778.1 bits), Expect = 1.5e-227, P = 1.5e-227
Identities = 419/624 (67%), Positives = 504/624 (80%)
Query: 1 MDKTVSPDAISTILXXXXXXXXXXIPEIVVQVLDLKLTGNRYMFNASDGKKRLKAILPSN 60
M +V+PDAIST+L EIVVQV+DLK GNRY F+A+DGK ++KA+ ++
Sbjct: 1 MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTKVKAMFTAS 60
Query: 61 LSSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKCEVVSPALEMEIKIEVKSDESG 120
L+ E+ISG IQN GLIRL+D+ +N+I +KS KY +VTKCE V L+ EI ++ KS E
Sbjct: 61 LTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGSVLDSEINLDSKSGEEE 120
Query: 121 IIFKPKQEDEVKKDGP-------GIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRR 173
KQ+ E P GI LKPKQE VAKSA+QI+ +Q GN APAAR+AMTRR
Sbjct: 121 AREPKKQKLEHSPVSPLNDVVSTGITLKPKQEFVAKSASQIMSEQRGNAAPAARMAMTRR 180
Query: 174 VHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAA 233
VHPLVSLNPYQGNWTIKVRVT+KG MR YKNARGEGCVFNVELTDE+GTQIQATMFN+AA
Sbjct: 181 VHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAA 240
Query: 234 RKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFN 293
RKF+DRFQLGKVYYISRG+L++ANKQFKTVQNDYEM FIP+TKFN
Sbjct: 241 RKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFN 300
Query: 294 FVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSL 353
FVPI+ELG YVN EL+D+IGVVQ+VSPTMSIRR+++NEM+PKRDIT+ADE+++TV VSL
Sbjct: 301 FVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSL 360
Query: 354 WNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSW 413
WN+LAT +GQELLD AD+SP++AIKSLKVGDFQG+SLST+ RS V+++P+ PEAKKLKSW
Sbjct: 361 WNDLATGIGQELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSW 420
Query: 414 YESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISL 473
++SEGK SM+SIGSG+ AKNG+RS+Y+DRV L+HITSNPSL +EKPVFFS +AYIS
Sbjct: 421 FDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISF 480
Query: 474 IKPDQAMWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISI 533
IKPDQ MWY+ACKTCNKKVT+AL SGYWCEGCQ+ EECSLRYIM +V D SGE WIS
Sbjct: 481 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 540
Query: 534 FNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRV 593
FN+EAE+I+GCSADELN+LKS+ G+ N YQ KLKE TW H+ RVSV Q EYN EKRQRV
Sbjct: 541 FNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRV 600
Query: 594 TVRAVAPVDFAAESKFLLEEISKK 617
TV+ VAP+DFAAE++ LL++IS K
Sbjct: 601 TVKGVAPLDFAAETRLLLQDISNK 624
>TAIR|locus:2054577 [details] [associations]
symbol:RPA1A "replication protein A 1A" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006260 "DNA replication"
evidence=IEA;ISS] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IGI;RCA]
[GO:0007141 "male meiosis I" evidence=IMP] [GO:0009555 "pollen
development" evidence=IMP] [GO:0048232 "male gamete generation"
evidence=IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0007140 "male meiosis" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010332 "response to
gamma radiation" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0032204
"regulation of telomere maintenance" evidence=RCA] [GO:0032504
"multicellular organism reproduction" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0043247 "telomere maintenance in response to DNA damage"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0050826 "response to freezing"
evidence=RCA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0006260
GO:GO:0000790 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0007131 GO:GO:0007141 GO:GO:0051026 GO:GO:0048232
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599 KO:K07466
TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 OMA:ICQVNRF EMBL:AC006420
HSSP:P27694 UniGene:At.22213 UniGene:At.71077 EMBL:BT005946
EMBL:AK118699 IPI:IPI00523631 PIR:B84478 RefSeq:NP_178690.1
ProteinModelPortal:Q9SKI4 SMR:Q9SKI4 IntAct:Q9SKI4 STRING:Q9SKI4
PaxDb:Q9SKI4 PRIDE:Q9SKI4 EnsemblPlants:AT2G06510.1 GeneID:815209
KEGG:ath:AT2G06510 TAIR:At2g06510 InParanoid:Q9SKI4
PhylomeDB:Q9SKI4 ProtClustDB:CLSN2683265 ArrayExpress:Q9SKI4
Genevestigator:Q9SKI4 Uniprot:Q9SKI4
Length = 640
Score = 772 (276.8 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 164/464 (35%), Positives = 270/464 (58%)
Query: 161 NMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDED 220
N P + RV P+ +LNPYQG W IK RVT+KG++R Y NA+G+G VF+ +L D D
Sbjct: 184 NHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYD 243
Query: 221 GTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXX 280
G +I+ T FN +FYD ++GKVY IS+G+L+ A K F ++N++E+
Sbjct: 244 GGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELC 303
Query: 281 XXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDIT 340
IP+ +F+F PI ++ N T ++D+IGVV +V+P++ I RK+ E +R +
Sbjct: 304 PDEDGSIPKQQFSFRPISDIENAENNT-ILDVIGVVTSVNPSVPILRKNGME-THRRILN 361
Query: 341 VADETKRTVTVSLWNELATNVGQELLDNADKS--PIVAIKSLKVGDFQGISLSTLGRSTV 398
+ DE+ + V V+LW E G++L + D + P++AIK+ KV DF G S+ T+ + +
Sbjct: 362 LKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQL 421
Query: 399 LVSPDLPEAKKLKSWYESEGKGTSMASIGSGL--GSLAKNGARSMYSDRVSLTHITSNPS 456
++PD PEA KL++W++ GK T+ SI G +++N R S
Sbjct: 422 FINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQ-------IKEEG 474
Query: 457 LG-DEKPVFFSIKAYISLIKPDQAMWYRAC------KTCNKKVTDALGSGYW-CEGCQKN 508
LG +KP + ++KA IS IK D + Y AC K CNKKVT + G+ W C+ C +
Sbjct: 475 LGRSDKPDWITVKATISFIKTD-SFCYTACPLMIGDKQCNKKVTRS-GTNRWLCDRCNQE 532
Query: 509 DEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKE 568
+EC RY++ ++ D +G WI+ F E E I+GC A +L +K +L + + +++
Sbjct: 533 SDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRD 592
Query: 569 VTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLE 612
+ ++L++ + ++ Y +E+R ++TV V V++ +ESK++L+
Sbjct: 593 RLFHQYMLKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYMLD 636
Score = 94 (38.1 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 29 VVQVLDLKLTGN-------RYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLDY 81
++QVL++K+ G RY F SDG A++ L+ V SG + +++L+DY
Sbjct: 23 LLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDY 82
Query: 82 ALNEIPTKSEKYLIVTKCEVV 102
+++ K K ++V E +
Sbjct: 83 ICSDV--KGRKLIVVLNMETI 101
>TAIR|locus:2163553 [details] [associations]
symbol:RPA70C species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
SMART:SM00343 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB018113 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 HSSP:P27694 OMA:RWTIKVR IPI:IPI00525234
RefSeq:NP_199353.1 UniGene:At.30014 ProteinModelPortal:Q9FHJ6
SMR:Q9FHJ6 STRING:Q9FHJ6 PaxDb:Q9FHJ6 PRIDE:Q9FHJ6
EnsemblPlants:AT5G45400.1 GeneID:834576 KEGG:ath:AT5G45400
TAIR:At5g45400 InParanoid:Q9FHJ6 PhylomeDB:Q9FHJ6
ProtClustDB:CLSN2687493 Genevestigator:Q9FHJ6 Uniprot:Q9FHJ6
Length = 853
Score = 759 (272.2 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 162/474 (34%), Positives = 266/474 (56%)
Query: 161 NMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDED 220
N P AR R++P+ +LNPYQG WTIKVRVTSK ++R + N RGEG +F+ +L D D
Sbjct: 286 NRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDAD 345
Query: 221 GTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXX 280
G +I+ T FN+A +F+D+ +G VY ISRG L+ A K F + NDYE+
Sbjct: 346 GGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPC 405
Query: 281 XXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDIT 340
IP+ F+F I ++ N + D+IG+V ++SPT++I RK+ E V KR +
Sbjct: 406 EDDGT-IPRYHFHFRNIGDIENMENNST-TDVIGIVSSISPTVAIMRKNLTE-VQKRSLQ 462
Query: 341 VADETKRTVTVSLWNELATNVGQELLDNADKS--PIVAIKSLKVGDFQGISLSTLGRSTV 398
+ D + R+V V++W GQ+L + D P++A+K+ ++G+F G +ST+G S
Sbjct: 463 LKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQF 522
Query: 399 LVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLG 458
+ PD PEA++L+ WYE EG+ SI + + R + + + LG
Sbjct: 523 FIEPDFPEARELRQWYEREGRNAHFTSISREFSGVGRQEVRKVIAQ-------IKDEKLG 575
Query: 459 -DEKPVFFSIKAYISLIKPDQAMWYRAC------KTCNKKVTDALGSGYW-CEGCQKNDE 510
EKP + ++ A IS +K + Y AC + C+KKVT+ G G W CE C K +
Sbjct: 576 TSEKPDWITVCATISFMKVEN-FCYTACPIMNGDRPCSKKVTNN-GDGTWRCEKCDKCVD 633
Query: 511 ECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVT 570
EC RYI+ ++ D + W + F E E I+G SA +L +K + D+ ++ ++ V
Sbjct: 634 ECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFEDIIRSVA 693
Query: 571 WVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK-KVSHQNA 623
+ ++ ++ + ++ Y++E+R + TV +++++ ++F+LE I K K+ N+
Sbjct: 694 FTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDKLKIGDANS 747
Score = 91 (37.1 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 29 VVQVLDLKL----------TGNRYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRL 78
V+QV +LKL + NRY F SDG +L ++L+S V G IQ +IRL
Sbjct: 27 VLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDLAAGMLNTSLNSLVNQGTIQLGSVIRL 86
Query: 79 LDYALNEIPTKSEKYLIVTKCEVV 102
Y N I T+ + +++ + EV+
Sbjct: 87 THYICNLIQTR--RIVVIMQLEVI 108
>UNIPROTKB|Q9AVL8 [details] [associations]
symbol:OsRPA70a "Replication protein A 70kDa" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 GO:GO:0009555
GO:GO:0003677 GO:GO:0006260 GO:GO:0000790 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007131 GO:GO:0007141
GO:GO:0051026 GO:GO:0048232 InterPro:IPR013955 Pfam:PF08646
TIGRFAMs:TIGR00617 HSSP:P27694 EMBL:AB042415
ProteinModelPortal:Q9AVL8 IntAct:Q9AVL8 STRING:Q9AVL8
KEGG:dosa:Os02t0776800-01 Gramene:Q9AVL8 Uniprot:Q9AVL8
Length = 654
Score = 739 (265.2 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 160/453 (35%), Positives = 258/453 (56%)
Query: 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA 232
R+ P+ +LNPYQG W IK RVT+KG++R Y NA+G+G VF+ +L D DG +I+ T FN
Sbjct: 208 RIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNAL 267
Query: 233 ARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKF 292
+FY+ ++GKVY +SRG LR A K + + N++E+ + IP +F
Sbjct: 268 LDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRF 327
Query: 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVS 352
+F PI+E+ N ++DIIGVV +V+P +I+RK+ E KR + + D + R+V V+
Sbjct: 328 DFRPINEIEDAQNNA-ILDIIGVVTSVNPCTTIQRKNGME-TQKRTMNLKDMSGRSVEVT 385
Query: 353 LWNELATNVGQELLDNADKS--PIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKL 410
+W + G +L ++ P++A+K+ KV DF G S+ T+ + ++PD EA L
Sbjct: 386 MWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQFFINPDSAEAHSL 445
Query: 411 KSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNP-SLGDEKPVFFSIKA 469
+ W++S G+ SI + GA S R ++ I +GD KP + ++KA
Sbjct: 446 RQWFDSGGRDAFTQSISRDITP----GA-SRNEIRKTVAQIKDEGLGMGD-KPDWITVKA 499
Query: 470 YISLIKPDQAMWYRAC------KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVC 523
+ K +++ +Y AC + CNKKVT + + C+ C + EEC RY++ ++
Sbjct: 500 TVIFFK-NESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQ 558
Query: 524 DGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQ 583
D SG AW++ F E + ++GCSA ELN LK + +D + + + +LLR+ V ++
Sbjct: 559 DHSGTAWVTAFQEAGQELLGCSATELNALKER--EDPRFADTMLNCLFQEYLLRLKVKEE 616
Query: 584 EYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 616
Y +E++ + T V VD + ESKFLL+ ISK
Sbjct: 617 SYGDERKVKNTAVKVEKVDPSGESKFLLDLISK 649
Score = 83 (34.3 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 30 VQVLDLKLT-GNRYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLDYALNEI-P 87
VQV +T G R+ SDG A+ + LS SG ++ +++L +Y +NE+ P
Sbjct: 31 VQVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGP 90
Query: 88 TKSEKYL----IVTKCEVV 102
+ L +V++CE++
Sbjct: 91 RRIIVILNLEVLVSECEII 109
>TAIR|locus:2134766 [details] [associations]
symbol:AT4G19130 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0010332 "response to gamma radiation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
PROSITE:PS50158 SMART:SM00343 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646
KO:K07466 TIGRFAMs:TIGR00617 OMA:QNKWVIK IPI:IPI00546271
RefSeq:NP_567576.2 UniGene:At.26624 UniGene:At.73929
ProteinModelPortal:F4JSG3 SMR:F4JSG3 PRIDE:F4JSG3
EnsemblPlants:AT4G19130.1 GeneID:827651 KEGG:ath:AT4G19130
Uniprot:F4JSG3
Length = 784
Score = 737 (264.5 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 160/466 (34%), Positives = 260/466 (55%)
Query: 161 NMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDED 220
N P AR ++ P+ +L+PY G WTIK RVT+K ++ Y N RGEG VFN +L D D
Sbjct: 215 NRGPVARNEAPPKIIPVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDAD 274
Query: 221 GTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXX 280
G +I+ T FN A +FYD+ +G +Y ISRG+LR A K F ++NDYE+
Sbjct: 275 GGEIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQC 334
Query: 281 XXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDIT 340
A IP+ +F+F I ++ N +VD+IG+V ++SPT++I RK N PKR +
Sbjct: 335 YEEDAAIPRHQFHFRTIGDIESMENNC-IVDVIGIVSSISPTVTITRK-NGTATPKRSLQ 392
Query: 341 VADETKRTVTVSLWNELATNVGQELLDNADKS--PIVAIKSLKVGDFQGISLSTLGRSTV 398
+ D + R+V V++W + GQ L D P++A+K+ ++ +F G ++ST+G S +
Sbjct: 393 LKDMSGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQL 452
Query: 399 LVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLG 458
+ PD EA+KLK+W+E EGK S+ K R S + LG
Sbjct: 453 FIDPDFVEAEKLKNWFEREGKSVPCISLSREFSGSGKVDVRKTISQ-------IKDEKLG 505
Query: 459 -DEKPVFFSIKAYISLIKPDQAMWYRAC------KTCNKKVTDALGSGYW-CEGCQKNDE 510
EKP + ++ A I +K D Y AC + C+KKVTD G G W CE C K+ +
Sbjct: 506 TSEKPDWITVSATILYLKFDN-FCYTACPIMNGDRPCSKKVTDN-GDGTWRCEKCDKSVD 563
Query: 511 ECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVT 570
EC RYI+ ++ D + ++ F E E I+G SA +L +K++ D+ ++ +++V
Sbjct: 564 ECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVA 623
Query: 571 WVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 616
+ + ++ V ++ +++E+R + TV V ++++A+++ +L + K
Sbjct: 624 FTKYNFKLKVKEETFSDEQRVKATVVKVDKLNYSADTRTMLGAMDK 669
Score = 76 (31.8 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 1 MDKTVSPDAISTILXXXXXXXXXXIPEIVVQVLDLKL-------TGNRYMFNASDGKKRL 53
M+ +++ AI I+ IP V+QV DLK T R+ SDG
Sbjct: 1 MEVSLTAGAIGKIMNGEVTTEADMIP--VLQVTDLKQIMAQQDPTRERFRMVLSDGTYLH 58
Query: 54 KAILPSNLSSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKCEVV 102
+ +L ++L++ V G +Q ++RL + + I K + +IV + EV+
Sbjct: 59 QGMLGTDLNNLVKEGTLQPGSIVRLTRFVGDVI--KGRRIVIVPQLEVL 105
>POMBASE|SPBC660.13c [details] [associations]
symbol:ssb1 "DNA replication factor A subunit Ssb1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IGI;IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISO] [GO:0000781
"chromosome, telomeric region" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005662 "DNA replication factor A complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IMP] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISO] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
PomBase:SPBC660.13c GO:GO:0005829 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0000724
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000781
GO:GO:0000723 GO:GO:0006269 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 OMA:QNKWVIK EMBL:U59385 EMBL:U75446 PIR:T40625
RefSeq:NP_595092.1 ProteinModelPortal:Q92372 DIP:DIP-29237N
IntAct:Q92372 STRING:Q92372 EnsemblFungi:SPBC660.13c.1
GeneID:2541158 KEGG:spo:SPBC660.13c OrthoDB:EOG4F7RTC
NextBio:20802271 Uniprot:Q92372
Length = 609
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 200/604 (33%), Positives = 310/604 (51%)
Query: 26 PEIVVQVLDLK-LTGN-------RYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIR 77
P ++QVL +K L N RY SD +++L + L+ V +Q ++
Sbjct: 23 PNPILQVLTVKELNSNPTSGAPKRYRVVLSDSINYAQSMLSTQLNHLVAENKLQKGAFVQ 82
Query: 78 LLDYALNEIPTKSEKYLIVTKCEVVSPALEMEIKIEVKSD-ESGIIFKPKQEDEVKKDGP 136
L + +N + K K LIV V++ M+ KI + E+ + +Q ++ P
Sbjct: 83 LTQFTVNVM--KERKILIVLGLNVLTELGVMD-KIGNPAGLETVDALRQQQNEQNNASAP 139
Query: 137 --GIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVT 194
GI +AA PAA +++ ++P+ L+PYQ WTI+ RVT
Sbjct: 140 RTGISTSTNSFYGNNAAATAPAPPPMMKKPAAPNSLSTIIYPIEGLSPYQNKWTIRARVT 199
Query: 195 SKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLR 254
+K ++ + N RGEG +F+V L DE G +I+AT FN+ FYD Q G VYYISR +
Sbjct: 200 NKSEVKHWHNQRGEGKLFSVNLLDESG-EIRATGFNDQVDAFYDILQEGSVYYISRCRVN 258
Query: 255 VANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIG 314
+A KQ+ VQN+YE+ TA +P KF+FV + E+G ++D+IG
Sbjct: 259 IAKKQYTNVQNEYELMFERDTEIRKAEDQTA-VPVAKFSFVSLQEVGDVAKDA-VIDVIG 316
Query: 315 VVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPI 374
V+QNV P I ++ + KRDIT+ D+T + V+LW + A + + I
Sbjct: 317 VLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEF------SVSEESI 370
Query: 375 VAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLA 434
+A K +KV DFQG SLS L ST+ V PD+ E+ LK WY+ +G+G A S + S
Sbjct: 371 LAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAK-HSVISSTL 429
Query: 435 KNGARSMYSDRVSLTHITSNPSLG-DEKPVFFSIKAYISLIKPDQAMWYRACKT--CNKK 491
RS ++R ++ + + LG E P +FS+K I I+ Y AC CNKK
Sbjct: 430 STTGRS--AERKNIAEVQAE-HLGMSETPDYFSLKGTIVYIRKKNVS-YPACPAADCNKK 485
Query: 492 VTDALGSGYW-CEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELN 550
V D GS W CE C K + RYI+ V D +G+ W+++F++ + I+ +ADELN
Sbjct: 486 VFDQGGS--WRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELN 543
Query: 551 ELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFL 610
+L Q D+N++ + E ++P++ + Q + E R R TV ++ +D+ ESK L
Sbjct: 544 DL--QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRL 601
Query: 611 LEEI 614
+ I
Sbjct: 602 INFI 605
>RGD|1307376 [details] [associations]
symbol:Rpa1 "replication protein A1" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000800 "lateral element" evidence=IEA;ISO]
[GO:0001673 "male germ cell nucleus" evidence=IEA;ISO] [GO:0001701
"in utero embryonic development" evidence=IEA;ISO] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005662 "DNA replication factor A complex" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA
replication" evidence=IC] [GO:0007126 "meiosis" evidence=IEA;ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA;ISO] [GO:0015629 "actin cytoskeleton"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=IEA;ISO]
[GO:0030097 "hemopoiesis" evidence=IEA;ISO] [GO:0048873
"homeostasis of number of cells within a tissue" evidence=IEA;ISO]
[GO:0051276 "chromosome organization" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 RGD:1307376
GO:GO:0007126 GO:GO:0005737 GO:GO:0015629 GO:GO:0016605
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
GO:GO:0001673 GO:GO:0003697 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OMA:ICQVNRF OrthoDB:EOG4V9TQ8 HSSP:P27694 EMBL:AY325234
IPI:IPI00382200 RefSeq:NP_001041308.1 UniGene:Rn.14841 SMR:Q7TP21
STRING:Q7TP21 Ensembl:ENSRNOT00000004229 GeneID:287524
KEGG:rno:287524 InParanoid:Q7TP21 NextBio:626397
Genevestigator:Q7TP21 Uniprot:Q7TP21
Length = 680
Score = 530 (191.6 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 144/408 (35%), Positives = 214/408 (52%)
Query: 29 VVQVLDLK--LTGN---RYMFNASDGKKRLKA-ILPSNLSSEVISGNIQNKGLIRLLDYA 82
V+QV++++ TGN RY SDG L + +L + L++ V G + + + ++ +
Sbjct: 11 VLQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNALVEGGQLASNCVCQVHRFI 70
Query: 83 LNEIPTKSEKYLIVTKCEVVSPALEMEIKI--EVKSDESGIIFKPKQEDEVKKDGPGIVL 140
+N + + +I+ EVV A E+ +KI V +E + P
Sbjct: 71 VNTLKD-GRRVVILMDLEVVKSAGEVGVKIGNPVPYNEGHAQQQAVSAPASAATPPASKP 129
Query: 141 KPKQEM--VAKSAAQILRDQN--GNMAPAARLAMTR----RVHPLVSLNPYQGNWTIKVR 192
+P+ V + A+ G A L T +V P+ SL PYQ WTI R
Sbjct: 130 QPQNGSLGVGSTVAKAYGASKPFGKPAGTGLLQPTSGTQSKVVPIASLTPYQSKWTICAR 189
Query: 193 VTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGT 252
VT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE KF+ ++ KVYY S+GT
Sbjct: 190 VTNKSQIRTWSNSRGEGKLFSIELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSKGT 248
Query: 253 LRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELVDI 312
L++ANKQF V+NDYEM +P +F+F I +L + LVDI
Sbjct: 249 LKIANKQFSAVKNDYEMTFNNETSVLPCEDGH-HLPTVQFDFTGIGDL-ESKSKDSLVDI 306
Query: 313 IGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKS 372
IG+ ++ I KSNN V KR+I + D + + VT +LW E A + D + +
Sbjct: 307 IGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGEDA-----DKFDGS-RQ 360
Query: 373 PIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKG 420
P++AIK +V DF G SLS L STVLV+PD+PEA KL+ W+ G G
Sbjct: 361 PVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYKLRGWHYVFGDG 408
Score = 226 (84.6 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 64/215 (29%), Positives = 100/215 (46%)
Query: 413 W-YESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYI 471
W ++SEG+ SI S L S G+ + + + N GD K +FS A +
Sbjct: 471 WGFDSEGQALDGVSI-SDLRSGGTGGSNTNWKTLYEAK--SENLGQGD-KADYFSTVATV 526
Query: 472 SLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529
++ + M Y+AC T CNKKV D Y CE C + R I+ + D
Sbjct: 527 VFLRKENCM-YQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQ 585
Query: 530 WISIFNEEAERIIGCSADELNELKSQLG------DDNSYQMKLKEVTWVPHLLRVSVAQQ 583
W++ F E AE I+G + L ELK ++G ++ +++ + + R+ V +
Sbjct: 586 WVTCFQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLE 645
Query: 584 EYNNEKRQRVTVRAVAPVDFAAESKFLLEEISKKV 618
YN+E R + TV V PVD+ SK L+ I K +
Sbjct: 646 TYNDESRIKATVIDVKPVDYRDYSKRLIMNIRKNI 680
>UNIPROTKB|P27694 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9606 "Homo sapiens" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0030097 "hemopoiesis" evidence=IEA] [GO:0048873 "homeostasis of
number of cells within a tissue" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006261 "DNA-dependent DNA replication"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0005662 "DNA replication factor A complex" evidence=IPI]
[GO:0016605 "PML body" evidence=IDA] [GO:0000075 "cell cycle
checkpoint" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0000730 "DNA recombinase assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006260
"DNA replication" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0015629 "actin cytoskeleton" evidence=IDA] Reactome:REACT_216
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 EMBL:CH471108
Reactome:REACT_115566 Reactome:REACT_21300 GO:GO:0046872
GO:GO:0015629 GO:GO:0000082 GO:GO:0016605 GO:GO:0008284
GO:GO:0001701 GO:GO:0003682 Reactome:REACT_111183 GO:GO:0001673
GO:GO:0003697 GO:GO:0048873 GO:GO:0030097 GO:GO:0000794
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000216
GO:GO:0000084 GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383
GO:GO:0000718 GO:GO:0006283 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 GO:GO:0005662 InterPro:IPR013955 Pfam:PF08646
PDB:2B3G PDBsum:2B3G GO:GO:0000730 eggNOG:COG1599 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 OMA:QNKWVIK EMBL:M63488 EMBL:AK289704
EMBL:AB209732 EMBL:AY599563 EMBL:BC018126 IPI:IPI00020127
PIR:A40457 RefSeq:NP_002936.1 UniGene:Hs.461925 PDB:1EWI PDB:1FGU
PDB:1JMC PDB:1L1O PDB:2B29 PDBsum:1EWI PDBsum:1FGU PDBsum:1JMC
PDBsum:1L1O PDBsum:2B29 DisProt:DP00061 ProteinModelPortal:P27694
SMR:P27694 DIP:DIP-24189N IntAct:P27694 MINT:MINT-91488
STRING:P27694 PhosphoSite:P27694 DMDM:1350579 PaxDb:P27694
PeptideAtlas:P27694 PRIDE:P27694 DNASU:6117 Ensembl:ENST00000254719
GeneID:6117 KEGG:hsa:6117 UCSC:uc002fto.2 GeneCards:GC17P001680
HGNC:HGNC:10289 HPA:CAB004563 HPA:HPA006914 MIM:179835
neXtProt:NX_P27694 PharmGKB:PA34651 InParanoid:P27694
PhylomeDB:P27694 BindingDB:P27694 ChEMBL:CHEMBL1764940 ChiTaRS:RPA1
EvolutionaryTrace:P27694 GenomeRNAi:6117 NextBio:23755 Bgee:P27694
CleanEx:HS_RPA1 Genevestigator:P27694 GermOnline:ENSG00000132383
Uniprot:P27694
Length = 616
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 194/607 (31%), Positives = 311/607 (51%)
Query: 29 VVQVLDLK--LTGN---RYMFNASDGKKRLKA-ILPSNLSSEVISGNIQNKGLIRLLDYA 82
++QV++++ TGN RY SDG L + +L + L+ V + + + ++ +
Sbjct: 24 ILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFI 83
Query: 83 LNEIPTKSEKYLIVTKCEVVSPALEMEIKIEVKSDESGIIFKPKQEDEVKKDGPGIVLKP 142
+N + + +I+ + EV+ A + +KI + + +P+ P +P
Sbjct: 84 VNTLKD-GRRVVILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRP 142
Query: 143 KQEMVAKSAAQILRDQNG-----NMAPAARLAMTR-----RVHPLVSLNPYQGNWTIKVR 192
+ + + + G A L+ T +V P+ SL PYQ WTI R
Sbjct: 143 QPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICAR 202
Query: 193 VTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGT 252
VT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE KF+ ++ KVYY S+GT
Sbjct: 203 VTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSKGT 261
Query: 253 LRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELVDI 312
L++ANKQF V+NDYEM +P +F+F ID+L + LVDI
Sbjct: 262 LKIANKQFTAVKNDYEMTFNNETSVMPCEDDH-HLPTVQFDFTGIDDLENKSKDS-LVDI 319
Query: 313 IGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKS 372
IG+ ++ I +SNN V KR+I + D + + VT +LW E A + D + +
Sbjct: 320 IGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDA-----DKFDGS-RQ 373
Query: 373 PIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGS 432
P++AIK +V DF G SLS L ST++ +PD+PEA KL+ W+++EG+ SI S L S
Sbjct: 374 PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSI-SDLKS 432
Query: 433 LAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRACKT--CN 489
G+ + + +L + S +LG +KP +FS A + ++ + M Y+AC T CN
Sbjct: 433 GGVGGSNTNWK---TLYEVKSE-NLGQGDKPDYFSSVATVVYLRKENCM-YQACPTQDCN 487
Query: 490 KKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADEL 549
KKV D Y CE C R I+ + D W++ F E AE I+G +A L
Sbjct: 488 KKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYL 547
Query: 550 NELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKF 609
ELK + ++ +++ + + + RV V + YN+E R + TV V PVD+ +
Sbjct: 548 GELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRR 605
Query: 610 LLEEISK 616
L+ I +
Sbjct: 606 LVMSIRR 612
>UNIPROTKB|Q65XV7 [details] [associations]
symbol:P0016H04.11 "Os05g0111000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF00098 Pfam:PF01336
Pfam:PF04057 PROSITE:PS50158 SMART:SM00343 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
EMBL:AP008211 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:CM000142 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 EMBL:AC079356 RefSeq:NP_001054445.1
UniGene:Os.53618 IntAct:Q65XV7 EnsemblPlants:LOC_Os05g02040.1
GeneID:4337594 KEGG:osa:4337594 OMA:RWTIKVR ProtClustDB:CLSN2695308
Uniprot:Q65XV7
Length = 951
Score = 698 (250.8 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 160/466 (34%), Positives = 260/466 (55%)
Query: 161 NMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDED 220
N PA+R R+ P+ +LNPYQ WTIK RVT+K ++R + NAR G VF+ +L D
Sbjct: 294 NRGPASRNDSATRIIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQ 353
Query: 221 GTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXX 280
G +I+A + E+A KF+ + ++G+VY ISRG+L+ A K++ T+ +DYE+
Sbjct: 354 GGEIRAQCWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEV 413
Query: 281 -XXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDI 339
IP+ ++NF I EL N T +VD++GVV +VSP+ +I RK E KR I
Sbjct: 414 CSDDDNSIPRLQYNFRQISELENMANET-IVDLLGVVTSVSPSATIMRKIGTE-TRKRSI 471
Query: 340 TVADETKRTVTVSLWNELATNVGQELLDNADK--SPIVAIKSLKVGDFQGISLSTLGRST 397
+ D + R++ V+LW GQ+L D +PI+A K +VGDF G S+ST+G +
Sbjct: 472 QLKDLSGRSIEVTLWGNFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFNGKSVSTIGSTQ 531
Query: 398 VLVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSL 457
++++PD PE ++L+ WY +EGK S+ + ++ + AR ++ I + +L
Sbjct: 532 LIINPDFPEVERLRQWYMTEGKTAPCISLSREMLNMGRTDARK------TIAQI-KDENL 584
Query: 458 GD-EKPVFFSIKAYISLIKPDQAMWYRAC-------KTCNKKVTDALGSGYW-CEGCQKN 508
G EKP + ++KA IS + + + Y AC + CNKK + G G W C+ C ++
Sbjct: 585 GRLEKPDWITVKAAISHVTTE-SFCYPACPKLLPVGRQCNKKAINN-GDGMWHCDRCDES 642
Query: 509 DEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKE 568
+ RY++ ++ D +G + S F+E E+I G A EL +++ DD + ++
Sbjct: 643 FQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAGELFSIRNVDQDDAQFAEIIEG 702
Query: 569 VTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEI 614
V W +L ++ V ++ YN+E+ + T V +D + ES LL I
Sbjct: 703 VRWHLYLFKLKVKEETYNDEQSLKCTAVKVEKLDPSKESNVLLGAI 748
Score = 56 (24.8 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 41 RYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKCE 100
R+ SDG +++L + L+ V ++ +++L D+ N I K + +IV K +
Sbjct: 49 RFRMMLSDGVNTQQSMLATALNPLVKDATLRPGTVVQLTDFMCNTIQGK--RIIIVVKLD 106
Query: 101 VV 102
V+
Sbjct: 107 VL 108
>MGI|MGI:1915525 [details] [associations]
symbol:Rpa1 "replication protein A1" species:10090 "Mus
musculus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0000793 "condensed chromosome"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0000800 "lateral element" evidence=IDA]
[GO:0001673 "male germ cell nucleus" evidence=IDA] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005662 "DNA replication factor A complex"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007126 "meiosis" evidence=IDA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016605 "PML body" evidence=ISO] [GO:0030097
"hemopoiesis" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IMP] [GO:0051276 "chromosome organization"
evidence=IMP] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 MGI:MGI:1915525
GO:GO:0007126 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
Reactome:REACT_120463 GO:GO:0001673 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0051276 Reactome:REACT_27235 GO:GO:0000800 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 ChiTaRS:RPA1 EMBL:AK148035 EMBL:AK150785
EMBL:AK151590 EMBL:AK153144 EMBL:AK165316 EMBL:AK165944
EMBL:AK167598 EMBL:AK169599 EMBL:AL603834 EMBL:BC019119
IPI:IPI00124520 RefSeq:NP_001157695.1 RefSeq:NP_080929.1
UniGene:Mm.180734 ProteinModelPortal:Q8VEE4 SMR:Q8VEE4
IntAct:Q8VEE4 STRING:Q8VEE4 PaxDb:Q8VEE4 PRIDE:Q8VEE4
Ensembl:ENSMUST00000092907 GeneID:68275 KEGG:mmu:68275
UCSC:uc007kdi.2 NextBio:326898 Bgee:Q8VEE4 CleanEx:MM_RPA1
Genevestigator:Q8VEE4 GermOnline:ENSMUSG00000000751 Uniprot:Q8VEE4
Length = 623
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 197/618 (31%), Positives = 312/618 (50%)
Query: 29 VVQVLDLK--LTGNR---YMFNASDGKKRLKA-ILPSNLSSEVISGNIQNKGLIRLLDYA 82
++QV++++ TGNR Y SDG L + +L + L++ V G + + + ++ +
Sbjct: 24 ILQVINIRPISTGNRSPRYRLLMSDGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHKFI 83
Query: 83 LNEIPTKSEKYLIVTKCEVVSPALEMEIKI--EVKSDESGIIFKPKQEDEVKKDGPGIVL 140
+N + K +++ EV+ A ++ +KI V +E + +Q+ + ++ P
Sbjct: 84 VNTLKD-GRKVVVLMDLEVMKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQQQAVPSPAS 142
Query: 141 -------KPKQEMVAKSAAQILRDQNGNMAPAARLAMT----------RRVHPLVSLNPY 183
KP+ + + G P + A T +V P+ SL PY
Sbjct: 143 AATPPASKPQPQNGSLGMGSTAAKAYGASKPFGKPAGTGLLQPSGGTQSKVVPIASLTPY 202
Query: 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLG 243
Q WTI RVT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE KF+ ++
Sbjct: 203 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVN 261
Query: 244 KVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRY 303
KVYY S+G L++ANKQF V+NDYEM +P +F+F I +L
Sbjct: 262 KVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPCEDGH-HLPTVQFDFTGIGDLESK 320
Query: 304 VNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQ 363
LVDIIG+ ++ ++ I KSNN V KR+I + D + + VT +LW E A
Sbjct: 321 AKDA-LVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDA----- 374
Query: 364 ELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSM 423
+ D + + P++AIK +V DF G SLS L STV+V+PD+PEA KL+ W++SEG+
Sbjct: 375 DKFDGS-RQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDG 433
Query: 424 ASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWY 482
SI A G + + H + +LG +K +FS A + ++ + M Y
Sbjct: 434 VSISDHRSGGAGGGNTNWKT-----LHEAKSENLGQGDKADYFSTVAAVVFLRKENCM-Y 487
Query: 483 RACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAER 540
+AC T CNKKV D Y CE C + R I+ A + D W++ F E AE
Sbjct: 488 QACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEA 547
Query: 541 IIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAP 600
I+G + L ELK + ++ +++ + + R+ V + YN+E R + TV V P
Sbjct: 548 ILGQNTMYLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKP 605
Query: 601 VDFAAESKFLLEEISKKV 618
VDF + L+ I K +
Sbjct: 606 VDFRDYGRRLIANIRKNM 623
>UNIPROTKB|Q0VCV0 [details] [associations]
symbol:RPA1 "Replication protein A1, 70kDa" species:9913
"Bos taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0048873 "homeostasis of number of cells within a tissue"
evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IEA] [GO:0016605
"PML body" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001673 "male germ cell nucleus" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0007126 GO:GO:0005737 GO:GO:0003677 GO:GO:0015629
GO:GO:0016605 GO:GO:0008284 GO:GO:0006260 GO:GO:0001701
GO:GO:0003682 GO:GO:0001673 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 OMA:QNKWVIK EMBL:DAAA02048667 EMBL:DAAA02048664
EMBL:DAAA02048665 EMBL:DAAA02048666 EMBL:BC119986 IPI:IPI00700452
RefSeq:NP_001068644.1 UniGene:Bt.19931 SMR:Q0VCV0 STRING:Q0VCV0
Ensembl:ENSBTAT00000012812 GeneID:504844 KEGG:bta:504844
InParanoid:Q0VCV0 NextBio:20866858 Uniprot:Q0VCV0
Length = 616
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 197/612 (32%), Positives = 308/612 (50%)
Query: 29 VVQVLDLK--LTGN---RYMFNASDGKKRLKA-ILPSNLSSEVISGNIQNKGLIRLLDYA 82
++QV++++ TGN RY SDG L + +L + L+ V + + + ++ +
Sbjct: 24 ILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFI 83
Query: 83 LNEIPTKSEKYLIVTKCEVVSPALEMEIKI--EVKSDESGIIFKPKQEDEVKKDGPGIVL 140
+N + + +I+ + EV+ A + KI V +E G +P V P
Sbjct: 84 VNTLKD-GRRVVILMELEVLKSAEAVGSKIGNPVPYNE-GHGQQPVVPPPVSATSPP-TS 140
Query: 141 KPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVH----------PLVSLNPYQGNWTIK 190
+P+Q+ + A G + T +V+ P+ SL PYQ WTI
Sbjct: 141 RPQQQNGSPGMASTASKAFGASKTFGKAGGTSQVNSSGGTQAKVVPIASLTPYQSKWTIC 200
Query: 191 VRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISR 250
RVT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE A KF+ + KVYY S+
Sbjct: 201 ARVTNKSQIRTWSNSRGEGKLFSIELVDESG-EIRATAFNEQADKFFPLIDVNKVYYFSK 259
Query: 251 GTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELV 310
GTL++ANKQF V+NDYEM +P +F+F I +L + LV
Sbjct: 260 GTLKIANKQFTAVKNDYEMTFNNETSVMPCEDGH-HLPTVQFDFTGIGDL-ESKSKDSLV 317
Query: 311 DIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNAD 370
DIIG+ +N I KSNN V KR+I + D + + V +LW + A + D +
Sbjct: 318 DIIGICKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNATLWGDDA-----DKFDGS- 371
Query: 371 KSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGL 430
+ P++AIK +V DF G SLS L ST++V+PD+PEA KL+ W++SEG+ G +
Sbjct: 372 RQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALD----GISI 427
Query: 431 GSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRACKT-- 487
L GA ++ +L + S +LG +KP +FS A + ++ + M Y+AC T
Sbjct: 428 SDLKSGGAGGSNTNWKTLYEVKSE-NLGQGDKPDYFSSVATVVYLRKENCM-YQACPTQD 485
Query: 488 CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSAD 547
CNKKV D Y CE C R I+ + D W++ F E AE I+G S
Sbjct: 486 CNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTA 545
Query: 548 ELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAES 607
L ELK + ++ +++ + + R+ V + YN+E R + TV V PVD+
Sbjct: 546 YLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVVDVKPVDYREYG 603
Query: 608 KFLLEEISKKVS 619
+ L+ I + +
Sbjct: 604 RRLVMNIRRNAA 615
>UNIPROTKB|F1RHH4 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
KO:K07466 TIGRFAMs:TIGR00617 CTD:6117 EMBL:CU914290
RefSeq:XP_003131870.1 UniGene:Ssc.11114 Ensembl:ENSSSCT00000019397
GeneID:100525428 KEGG:ssc:100525428 Uniprot:F1RHH4
Length = 616
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 201/612 (32%), Positives = 310/612 (50%)
Query: 29 VVQVLDLK--LTGN---RYMFNASDGKKRLKA-ILPSNLSSEVISGNIQNKGLIRLLDYA 82
++QV++++ TGN RY SDG L + +L + L+ V + + + ++ +
Sbjct: 24 ILQVINIRPITTGNNPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFI 83
Query: 83 LNEIPTKSEKYLIVTKCEVVSPALEMEIKI--EVKSDESGIIFKPKQEDEVKKDGPGIVL 140
+N + + +I+ EV+ A + +KI V +E G +P V P
Sbjct: 84 VNTLKD-GRRVVILMDLEVLKSAEAVGVKIGNPVPYNE-GHGQQPVVPPPVSAASPP-TS 140
Query: 141 KPKQE--------MVAKS--AAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIK 190
P+Q+ V+K+ A++I + +V P+ SL PYQ WTI
Sbjct: 141 NPQQQNGSSGVGSTVSKAYGASKIFGKAGATSVVNSSGGTQAKVVPIASLTPYQSKWTIC 200
Query: 191 VRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISR 250
RVT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE KF+ + KVYY S+
Sbjct: 201 ARVTNKSQIRTWSNSRGEGKLFSIELVDESG-EIRATAFNEQVDKFFPLIDVNKVYYFSK 259
Query: 251 GTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELV 310
GTL++ANKQF V+NDYEM +P +F+F I +L + LV
Sbjct: 260 GTLKIANKQFTAVKNDYEMTFSNETSVMPCEDGH-HLPTVQFDFTGIADLENKSKDS-LV 317
Query: 311 DIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNAD 370
DIIG+ +N I KS N V KR+I + D + + V +LW E A + D +
Sbjct: 318 DIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGEDA-----DKFDGS- 371
Query: 371 KSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGL 430
+ P++AIK +V DF G SLS L STV+V+PD+PEA KL+ W++SEG+ SI S L
Sbjct: 372 RQPVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSI-SDL 430
Query: 431 GSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRACKT-- 487
S G+ + + +L + S +LG +KP +FS A + ++ + M Y+AC T
Sbjct: 431 KSGGIGGSNTNWK---TLYEVKSE-NLGQGDKPDYFSAVATVVYLRKENCM-YQACPTQD 485
Query: 488 CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSAD 547
CNKKV D Y CE C R I+ + D W++ F E AE I+G S
Sbjct: 486 CNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTA 545
Query: 548 ELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAES 607
L ELK + ++ +++ + + R+ V + YN+E R + TV V PVD+
Sbjct: 546 YLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKGTVMDVKPVDYKEYG 603
Query: 608 KFLLEEISKKVS 619
+ L+ I K +
Sbjct: 604 RRLIMSIRKNAA 615
>CGD|CAL0004564 [details] [associations]
symbol:RFA1 species:5476 "Candida albicans" [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0005662 "DNA replication factor A complex"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0045184 "establishment of protein localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0007131
"reciprocal meiotic recombination" evidence=IEA] [GO:0030491
"heteroduplex formation" evidence=IEA] [GO:0007004 "telomere
maintenance via telomerase" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 CGD:CAL0004564
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACQ01000031
EMBL:AACQ01000030 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 TIGRFAMs:TIGR00617 HOGENOM:HOG000162322
RefSeq:XP_719539.1 RefSeq:XP_719663.1 ProteinModelPortal:Q5ACX4
STRING:Q5ACX4 GeneID:3638744 GeneID:3638823 KEGG:cal:CaO19.2093
KEGG:cal:CaO19.9640 Uniprot:Q5ACX4
Length = 624
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 180/623 (28%), Positives = 321/623 (51%)
Query: 25 IPEIVVQVLDLKL------TGNRYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRL 78
IP +++Q+ ++K ++ +DG ++ + S + + N Q ++++
Sbjct: 25 IP-MILQITNIKAFDVSPSDSKKFRILVNDGVYSTHGLIDESCSEYIKNNNCQRYAIVQV 83
Query: 79 LDYALNEIPTKSEKYLIVTKCEVVSPALEME----IKIE---VKSDESGIIFKPKQEDEV 131
+++ T S+ + ++ EV++P E I I+ ++ E + K+ +
Sbjct: 84 NAFSI--FAT-SKHFFVIKNFEVLAPTSEKSPNNIIPIDTYFLEHPEENYLTVMKKSESR 140
Query: 132 KKDGPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMT-RRVHPLVSLNPYQGNWTIK 190
++ P + P +A+S + G +A ++ A T R+V P+ +++PYQ NWTIK
Sbjct: 141 DRESPVPGVTPP---LAQSTNSFKSEVGGGVAAQSKPAGTHRKVSPIETISPYQNNWTIK 197
Query: 191 VRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISR 250
RV+ KG++RT+ N++GEG VF L DE +I+A+ FNE A + + + GKVYYIS+
Sbjct: 198 ARVSYKGDLRTWSNSKGEGKVFGFNLLDESD-EIKASAFNETAERAHKLLEEGKVYYISK 256
Query: 251 GTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELV 310
+ A K+F T+ + YE+ + +P+ FNFV +D++ + + ++
Sbjct: 257 ARVAAARKKFNTLSHPYELTFDKDTEITECFDESD-VPKLNFNFVKLDQV-QNLEANAII 314
Query: 311 DIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNAD 370
D++G ++ V P I KS ++ +R+I V DET + + LWN AT+ N +
Sbjct: 315 DVLGALKTVFPPFQITAKSTGKVFDRRNILVVDETGFGIELGLWNNTATDF------NIE 368
Query: 371 KSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGL 430
+ +VA+K KV D+ G +LS +++ +P PE+ KLK WY++ G S S+ +
Sbjct: 369 EGTVVAVKGCKVSDYDGRTLSLTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLK--I 426
Query: 431 GSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQAMWYRAC----- 485
+ G + S R+S+ S EKP +FSIKA ++ KP+ Y AC
Sbjct: 427 DNAGSGGDK--ISQRISINQALEEHSGSTEKPDYFSIKASVTFCKPENFA-YPACPNLVQ 483
Query: 486 --------KTCNKKVTDALGSGYW-CEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNE 536
+ CNKK+ G W CE C K EE + RY++ V D +G W+++FN+
Sbjct: 484 NADATRPAQVCNKKLVFQDNDGTWRCERCAKTYEEPTWRYVLSCSVTDSTGHMWVTLFND 543
Query: 537 EAERIIGCSADEL---NELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRV 593
+AE+++G A EL E KS++ + KE + LRV Q+ YN+E + R
Sbjct: 544 QAEKLLGIDATELVKKKEQKSEVANQIMNNTLFKEFS-----LRVKAKQETYNDELKTRY 598
Query: 594 TVRAVAPVDFAAESKFLLEEISK 616
+ + +D+A+ES+FL++++ +
Sbjct: 599 SAAGINELDYASESQFLIKKLDQ 621
>UNIPROTKB|E2R436 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 GO:GO:0003677
GO:GO:0015629 GO:GO:0016605 GO:GO:0008284 GO:GO:0006260
GO:GO:0001701 GO:GO:0003682 GO:GO:0001673 GO:GO:0048873
GO:GO:0000724 GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
KO:K07466 TIGRFAMs:TIGR00617 OMA:ICQVNRF EMBL:AAEX03006697
RefSeq:XP_003639310.1 ProteinModelPortal:E2R436
Ensembl:ENSCAFT00000030554 GeneID:100855690 KEGG:cfa:100855690
NextBio:20864074 Uniprot:E2R436
Length = 616
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 196/609 (32%), Positives = 309/609 (50%)
Query: 29 VVQVLDLK--LTGN---RYMFNASDGKKRLKA-ILPSNLSSEVISGNIQNKGLIRLLDYA 82
++QV++++ TGN RY SDG L + +L + L+ V + + + ++ +
Sbjct: 24 ILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCICQINRFI 83
Query: 83 LNEIPTKSEKYLIVTKCEVVSPALEMEIKI--EVKSDESGIIFKPKQEDEVKKDGPGIVL 140
+N + + +I+ + ++ A + +KI V +E G + V P
Sbjct: 84 VNTLKD-GRRVVILMELNILKSAEAVGLKIGNPVPYNE-GHGQQQAVPSPVSAANPP-AN 140
Query: 141 KPKQE--------MVAK--SAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIK 190
KP+Q+ +K SA++ G ++ +V P+ SL PYQ WTI
Sbjct: 141 KPQQQNGSSAMGFTASKTYSASKTFGKPGGTSLASSSGGTQVKVVPIASLTPYQSKWTIC 200
Query: 191 VRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISR 250
RVT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE KF+ + KVYYIS+
Sbjct: 201 ARVTNKSQIRTWSNSRGEGKLFSIELVDESG-EIRATAFNEQVDKFFPLIDMNKVYYISK 259
Query: 251 GTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELV 310
G L++ANKQF V+NDYEM +P +F+F I +L + L+
Sbjct: 260 GILKIANKQFTAVKNDYEMTFNNETSVMPCEDGH-HLPTVQFDFTGIGDLESKTKDS-LI 317
Query: 311 DIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNAD 370
DIIG+ ++ I KSNN V KR+I + D + + VT +LW E A + D +
Sbjct: 318 DIIGICKSYEEATKITVKSNNREVSKRNIYLMDMSGKVVTATLWGEDA-----DRFDGS- 371
Query: 371 KSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGL 430
+ P++AIK +V DF G SLS L ST++V+PD+PEA KL+ W++SEG+ SI S L
Sbjct: 372 RQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISI-SDL 430
Query: 431 GSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRACKT-- 487
S G + + +L + S +LG +K +FS A + ++ + M Y+AC T
Sbjct: 431 KSGGTGGGNTNWK---TLYEVKSE-NLGHGDKADYFSSVATVVYLRKENCM-YQACPTQD 485
Query: 488 CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSAD 547
CNKKV D Y CE C R I+ + D W++ F E AE IIG +
Sbjct: 486 CNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIIGQNTA 545
Query: 548 ELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAES 607
L ELK + ++ +++ + + R+ V + YN+E R + TV V PVD+
Sbjct: 546 YLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYREYG 603
Query: 608 KFLLEEISK 616
+ L+ I +
Sbjct: 604 RRLIMNIRR 612
>UNIPROTKB|I3LHB2 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
TIGRFAMs:TIGR00617 OMA:ICQVNRF EMBL:CU914290
Ensembl:ENSSSCT00000029329 Uniprot:I3LHB2
Length = 625
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 199/619 (32%), Positives = 311/619 (50%)
Query: 29 VVQVLDLK--LTGN---RYMFNASDGKKRLKA-ILPSNLSSEVISGNIQNKGLIRLLDYA 82
++QV++++ TGN RY SDG L + +L + L+ V + + + ++ +
Sbjct: 24 ILQVINIRPITTGNNPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFI 83
Query: 83 LNEIPTKSEKYLIVTKCEVVSPALEMEIKI--EVKSDESGIIFKP-KQEDEVKKDGPGI- 138
+N + + +I+ EV+ A + +KI V +E + K+ + P +
Sbjct: 84 VNTLKD-GRRVVILMDLEVLKSAEAVGVKIGNPVPYNEEFSKWNENKRHGQQPVVPPPVS 142
Query: 139 -----VLKPKQE--------MVAKS--AAQILRDQNGNMAPAARLAMTRRVHPLVSLNPY 183
P+Q+ V+K+ A++I + +V P+ SL PY
Sbjct: 143 AASPPTSNPQQQNGSSGVGSTVSKAYGASKIFGKAGATSVVNSSGGTQAKVVPIASLTPY 202
Query: 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLG 243
Q WTI RVT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE KF+ +
Sbjct: 203 QSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESG-EIRATAFNEQVDKFFPLIDVN 261
Query: 244 KVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRY 303
KVYY S+GTL++ANKQF V+NDYEM +P +F+F I +L
Sbjct: 262 KVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPCEDGH-HLPTVQFDFTGIADLENK 320
Query: 304 VNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQ 363
+ LVDIIG+ +N I KS N V KR+I + D + + V +LW E A
Sbjct: 321 SKDS-LVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGEDA----- 374
Query: 364 ELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSM 423
+ D + + P++AIK +V DF G SLS L STV+V+PD+PEA KL+ W++SEG+
Sbjct: 375 DKFDGS-RQPVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQALDG 433
Query: 424 ASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWY 482
SI S L S G+ + + +L + S +LG +KP +FS A + ++ + M Y
Sbjct: 434 VSI-SDLKSGGIGGSNTNWK---TLYEVKSE-NLGQGDKPDYFSAVATVVYLRKENCM-Y 487
Query: 483 RACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAER 540
+AC T CNKKV D Y CE C R I+ + D W++ F E AE
Sbjct: 488 QACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEA 547
Query: 541 IIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAP 600
I+G S L ELK + ++ +++ + + R+ V + YN+E R + TV V P
Sbjct: 548 ILGQSTAYLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKGTVMDVKP 605
Query: 601 VDFAAESKFLLEEISKKVS 619
VD+ + L+ I K +
Sbjct: 606 VDYKEYGRRLIMSIRKNAA 624
>FB|FBgn0010173 [details] [associations]
symbol:RpA-70 "Replication Protein A 70" species:7227
"Drosophila melanogaster" [GO:0003697 "single-stranded DNA binding"
evidence=NAS;IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=NAS;IDA] [GO:0005662 "DNA replication factor A complex"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0048812 "neuron projection morphogenesis" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 EMBL:AE014297 GO:GO:0005875 GO:GO:0007095
GO:GO:0007052 GO:GO:0046872 GO:GO:0006261 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617
EMBL:Z70277 EMBL:AY069331 RefSeq:NP_524274.1 UniGene:Dm.2177
ProteinModelPortal:Q24492 SMR:Q24492 DIP:DIP-22335N IntAct:Q24492
MINT:MINT-747966 STRING:Q24492 PaxDb:Q24492 PRIDE:Q24492
EnsemblMetazoa:FBtr0081867 GeneID:40972 KEGG:dme:Dmel_CG9633
CTD:40972 FlyBase:FBgn0010173 InParanoid:Q24492 OMA:QNKWVIK
OrthoDB:EOG444J1R PhylomeDB:Q24492 GenomeRNAi:40972 NextBio:821535
Bgee:Q24492 GermOnline:CG9633 Uniprot:Q24492
Length = 603
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 184/602 (30%), Positives = 309/602 (51%)
Query: 29 VVQVLDLKLTGN-----RYMFNASDGKK-RLKAILPSNLSSEVISGNIQNKGLIRLLDYA 82
V+Q+L +K + RY SDGK A+L S L+ +G ++ +++L Y
Sbjct: 24 VLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYV 83
Query: 83 LNEIPTKS--EKYLIVTKCEVVSPALEMEIKIEVKSDESGIIFKPKQEDEVKKD-GPGIV 139
+ + ++ LI+++ VV+P E++ KI + + E+ K+D P
Sbjct: 84 TSLVGKDGAGKRVLIISELTVVNPGAEVKSKIG-----EPVTY----ENAAKQDLAPKPA 134
Query: 140 LKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNM 199
+ + +AK + N M + MT HP+ SL+PYQ W IK RVTSK +
Sbjct: 135 VTSNSKPIAKKEPSHNNNNNIVMNSSINSGMT---HPISSLSPYQNKWVIKARVTSKSGI 191
Query: 200 RTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQ 259
RT+ NARGEG +F+++L DE G +I+AT F E KFYD Q+ VYYIS+ L+ ANKQ
Sbjct: 192 RTWSNARGEGKLFSMDLMDESG-EIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQ 250
Query: 260 FKTVQNDYEMXXXXXXXXXXXXXXTAF-IPQTKFNFVPIDELGRYVNGTELVDIIGVVQN 318
+ ++ N YEM IP+ K+N VPI ++ N VD IG+ +
Sbjct: 251 YSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAA-VDTIGICKE 309
Query: 319 VSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIK 378
V S ++ N+ KRDIT+ D + ++++LW + A N + P++ +K
Sbjct: 310 VGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHV------QPVILVK 363
Query: 379 SLKVGDFQG-ISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNG 437
++ +F G SLS G S + ++PD+PEA KL+ W+++ G G S+A++ S A+ G
Sbjct: 364 GTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGG-GDSVANMVS-----ARTG 417
Query: 438 ARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRAC--KTCNKKVTD 494
S ++ ++L + +LG +KP +F KA + ++K + A +YRAC CNKKV D
Sbjct: 418 GGSFSTEWMTLKDARAR-NLGSGDKPDYFQCKAVVHIVKQENA-FYRACPQSDCNKKVVD 475
Query: 495 ALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKS 554
+ CE C R ++ + D + W+S FNE E+++G ++ E+ E
Sbjct: 476 EGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALE 535
Query: 555 QLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEI 614
D + + + H+ ++ + Y + R ++TV++VAP++ +K LL+E+
Sbjct: 536 N--DPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKEL 593
Query: 615 SK 616
+
Sbjct: 594 QE 595
>SGD|S000000065 [details] [associations]
symbol:RFA1 "Subunit of heterotrimeric Replication Protein A
(RPA)" species:4932 "Saccharomyces cerevisiae" [GO:0000781
"chromosome, telomeric region" evidence=IMP] [GO:0000722 "telomere
maintenance via recombination" evidence=IGI] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IMP;IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0045184 "establishment of protein
localization" evidence=IPI] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IDA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IPI] [GO:0005662 "DNA replication factor A complex"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0030491 "heteroduplex
formation" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 SGD:S000000065 GO:GO:0005737
EMBL:BK006935 GO:GO:0046872 GO:GO:0043565 GO:GO:0016567
GO:GO:0045184 GO:GO:0003690 GO:GO:0003697 GO:GO:0000724
GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000781 GO:GO:0007131 GO:GO:0007004 GO:GO:0000722
GO:GO:0006289 EMBL:L22015 GO:GO:0006268 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 GO:GO:0030491 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 OMA:IKARVSY
TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 OrthoDB:EOG4F7RTC
EMBL:X59748 EMBL:M60262 EMBL:S64901 PIR:S20145 RefSeq:NP_009404.1
PDB:1YNX PDBsum:1YNX ProteinModelPortal:P22336 SMR:P22336
DIP:DIP-2512N IntAct:P22336 MINT:MINT-476157 STRING:P22336
PaxDb:P22336 PeptideAtlas:P22336 EnsemblFungi:YAR007C GeneID:851266
KEGG:sce:YAR007C CYGD:YAR007c EvolutionaryTrace:P22336
NextBio:968234 Genevestigator:P22336 GermOnline:YAR007C
Uniprot:P22336
Length = 621
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 180/589 (30%), Positives = 308/589 (52%)
Query: 47 SDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLDYALNEIPTKSEKY-LIVTKCEVVSPA 105
SDG +KA+L + +S+ S +Q +IR++ A I + +KY L+V E+V
Sbjct: 51 SDGIYHMKALLRNQAASKFQSMELQRGDIIRVI-IAEPAIVRERKKYVLLVDDFELVQSR 109
Query: 106 LEMEIKIEVKSDESGIIFKPKQ--EDEVKKDGPGIVLKPKQEMVAKSAAQILRDQNGNM- 162
+M + D P + +DE D + Q + + + N N+
Sbjct: 110 ADMVNQTSTFLDNY-FSEHPNETLKDEDITDSGNVA---NQTNASNAGVPDMLHSNSNLN 165
Query: 163 APAARLA-------MTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVE 215
A + A TR + + L+PYQ WTIK RV+ KG ++T+ N RG+G +FNV
Sbjct: 166 ANERKFANENPNSQKTRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVN 225
Query: 216 LTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXX 275
D G +I+AT FN+ A KF + Q GKVYY+S+ L+ A QF + + YE+
Sbjct: 226 FLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDT 284
Query: 276 XXXXXXXXTAFIPQTKFNFVPIDEL-GRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMV 334
+ +P+T FNF+ +D + + VN VD++G++Q ++P + ++ +
Sbjct: 285 VIEECFDESN-VPKTHFNFIKLDAIQNQEVNSN--VDVLGIIQTINPHFELTSRAGKKF- 340
Query: 335 PKRDITVADETKRTVTVSLWNELATNVGQELLD-NADKSPIVAIKSLKVGDFQGISLSTL 393
+RDIT+ D++ +++V LWN Q+ LD N + + AIK ++V DF G SLS
Sbjct: 341 DRRDITIVDDSGFSISVGLWN-------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMG 393
Query: 394 GRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGS--GLGSLAKNGARSMYSDRVSLTHI 451
ST++ +P++PEA LK WY+S+G+ + ++ G+G + + R+++
Sbjct: 394 FSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIARA 453
Query: 452 TSNPSLG-DEKPVFFSIKAYISLIKPDQAMWYRAC--KTCNKKVTDALGSGYW-CEGCQK 507
+ +LG EK FFS+KA IS +K D Y AC + CNKKV + G W CE C
Sbjct: 454 QAE-NLGRSEKGDFFSVKAAISFLKVDNFA-YPACSNENCNKKVLEQ-PDGTWRCEKCDT 510
Query: 508 NDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLK 567
N+ + RYI+ + D + + W+++F+++A++++G A+ L LK + D N + +
Sbjct: 511 NNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQ 568
Query: 568 EVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 616
+ + R+ + YN++ R R TV + +++ AE+ +L +E+SK
Sbjct: 569 SIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
>UNIPROTKB|Q5ZJJ2 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0030097
"hemopoiesis" evidence=IEA] [GO:0048873 "homeostasis of number of
cells within a tissue" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0015629 GO:GO:0016605
GO:GO:0008284 GO:GO:0006260 GO:GO:0003682 GO:GO:0001673
GO:GO:0000724 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 Reactome:REACT_115612 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617
EMBL:AJ720442 IPI:IPI00571088 RefSeq:NP_001006221.1
UniGene:Gga.4736 ProteinModelPortal:Q5ZJJ2 SMR:Q5ZJJ2 STRING:Q5ZJJ2
PRIDE:Q5ZJJ2 Ensembl:ENSGALT00000004849 GeneID:417563
KEGG:gga:417563 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
InParanoid:Q5ZJJ2 OMA:ICQVNRF OrthoDB:EOG4V9TQ8 NextBio:20820847
Uniprot:Q5ZJJ2
Length = 614
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 160/447 (35%), Positives = 245/447 (54%)
Query: 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA 232
+V P+ SLNPYQ WTI RVT KG +RT+ N+RGEG +F++EL DE G +I+AT FN+
Sbjct: 180 KVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESG-EIRATAFNDQ 238
Query: 233 ARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKF 292
A KF+ +L KVYY ++G L+ ANKQ+ V+NDYE+ +P +F
Sbjct: 239 ADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFNNETSVVPCDDAQ-HLPSVQF 297
Query: 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVS 352
+FV I +L + +VD+IG+ ++ I K++N V KR++ + D + + VT +
Sbjct: 298 DFVSISDLENTPKDS-IVDVIGICKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTAT 356
Query: 353 LWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKS 412
LW A E D + + P++AIK +V DF G SLS L STV+V+PD PEA KL+
Sbjct: 357 LWGNEA-----EKFDGS-RQPVIAIKGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRG 410
Query: 413 WYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYI 471
W++SEG+ ASI G A +G + + +L S LG +K +FS I
Sbjct: 411 WFDSEGQLLECASISDVRGGSA-SGVNTNWK---TLYEAKSE-RLGQGDKADYFSCVGTI 465
Query: 472 SLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529
++ + M Y+AC + CNKKV D Y CE C + R +++ + D
Sbjct: 466 VHLRKENCM-YQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQ 524
Query: 530 WISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEK 589
W++ F E AE I+G SA L ELK + ++ +++ + + + ++ V + YN+E
Sbjct: 525 WVTCFQESAEFILGQSATFLGELKDK--NEQAFEEVFQNANFNTYEFKIRVKLETYNDES 582
Query: 590 RQRVTVRAVAPVDFAAESKFLLEEISK 616
R + T V PV++ SK L+ I +
Sbjct: 583 RIKATALDVKPVNYREYSKRLIASIRR 609
>ZFIN|ZDB-GENE-030912-3 [details] [associations]
symbol:rpa1 "replication protein A1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 ZFIN:ZDB-GENE-030912-3
GO:GO:0005634 GO:GO:0007507 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617 CTD:6117
HOGENOM:HOG000162322 HOVERGEN:HBG010502 OrthoDB:EOG4V9TQ8
EMBL:AY648787 EMBL:BC066711 IPI:IPI00481800 RefSeq:NP_956105.2
UniGene:Dr.76790 ProteinModelPortal:Q6NY74 SMR:Q6NY74 STRING:Q6NY74
PRIDE:Q6NY74 Ensembl:ENSDART00000032880 GeneID:327491
KEGG:dre:327491 InParanoid:Q6NY74 OMA:TSTIQPC NextBio:20810051
Bgee:Q6NY74 Uniprot:Q6NY74
Length = 601
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 182/587 (31%), Positives = 294/587 (50%)
Query: 40 NRYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKC 99
+R+ SDG + + + S + + N + +L ++ + + +++
Sbjct: 39 SRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCVCVLKRSVTNVLKDGRRVVVILDI 98
Query: 100 EVVSPALEMEIKIEVKSDESGIIFKPKQEDEVKKDGPGIVLKPKQEMVAKSAAQILRD-Q 158
EV+ A +M KI D + + + + + P +P Q + Q
Sbjct: 99 EVLKSADQMPGKI---GDPTPYV---EGQSKAPSTAPAPTARPLQPQNGSDGSTYRPSAQ 152
Query: 159 NGNMAPAARLAM---TRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVE 215
+ P A + +V P+ SLNPYQ WTI+ RVT+K +RT+ N+RG+G +F++E
Sbjct: 153 SFGKKPMAAPNTPGGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSME 212
Query: 216 LTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXX 275
L DE G +I+AT FN KF+ + GKV+YIS+GTL++ANKQF +++NDYEM
Sbjct: 213 LVDESG-EIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMTLNGET 271
Query: 276 XXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVP 335
+P + +FV I +L T ++D+IGV +N I K++ E V
Sbjct: 272 SIIPCEDSND-VPMLQCDFVSIADLESREKDT-ILDVIGVCKNAEDVARIMTKNSRE-VS 328
Query: 336 KRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGR 395
KR+I + D + R + +++W A E D + + PI+AIK ++ DF G SLSTL
Sbjct: 329 KRNIQLIDMSGRVIQLTMWGSDA-----ETFDGSGQ-PILAIKGARLSDFGGRSLSTLYS 382
Query: 396 STVLVSPDLPEAKKLKSWYESEGK---GTSMASIGSGLGSLAKNGARSMYSDRVSLTHIT 452
STV+++PD+PEA KL+ WY+ EG G SM + G G G + + +L +
Sbjct: 383 STVMINPDIPEAYKLRGWYDKEGHALDGQSMTEL-RGPGG----GGNTNWK---TLAEV- 433
Query: 453 SNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRAC--KTCNKKVTDALGSGYWCEGCQKND 509
N LG +K +FS A I I+ + + Y+AC K CNKKV D + CE C K
Sbjct: 434 KNEHLGHGDKADYFSCIATIVYIRKENCL-YQACPSKDCNKKVVDQQNGMFRCEKCDKEF 492
Query: 510 EECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEV 569
+ R ++ A + D W++ F + AE ++G ++ L +LK ++ ++ +
Sbjct: 493 PDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDT--NEAAFDEVFQHA 550
Query: 570 TWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 616
+ + R V + YN+E R +VTV PVD SK L+ I K
Sbjct: 551 NFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRK 597
>ASPGD|ASPL0000065893 [details] [associations]
symbol:AN7423 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0005662 "DNA replication
factor A complex" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 EMBL:BN001304
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 TIGRFAMs:TIGR00617 OMA:QNKWVIK
EnsemblFungi:CADANIAT00000512 Uniprot:C8VB95
Length = 603
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 174/534 (32%), Positives = 267/534 (50%)
Query: 89 KSEKYLIVTKCEVVSPALEMEIKIEVKSDESGIIFKPK-QEDEVKKDGPGIVLKPKQEMV 147
K +K LIV EV+ E E E K ES + K Q + +G
Sbjct: 92 KGKKILIVLDLEVLKELGEAEKLGEPKPLESKAEEEEKPQPTTISSNGFYGAKAQNAPSQ 151
Query: 148 AKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARG 207
S AQ R G+ APA ++P+ +++PY WTIK R TSK ++T+ G
Sbjct: 152 ISSRAQHTRPMQGS-APAT-------IYPIEAISPYAHKWTIKARCTSKSPIKTFHGRSG 203
Query: 208 EGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGT-LRVANKQFKTVQND 266
+G +F+V L D+ G +I+AT FNE YD FQ G+VYYIS +++A KQF + ND
Sbjct: 204 DGTLFSVNLLDDSG-EIRATGFNEQCSALYDLFQEGEVYYISSPCRVQIAKKQFTNLNND 262
Query: 267 YEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIR 326
YE+ +PQ +FNF I +L + V +D+IGV+++V T I
Sbjct: 263 YELTFERDTLVEKAEEQND-VPQVRFNFTTIGDL-QSVEKDTTIDVIGVLKDVGETTQIV 320
Query: 327 RKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQ 386
K+ + KR++T+ D T +V +++W A N A +VA K +KV DF
Sbjct: 321 SKTTKKPYDKRELTLVDNTGFSVRLTIWGTTAMNFA------ASPESVVAFKGVKVSDFG 374
Query: 387 GISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRV 446
G SLS L +V V PD+ EA +LK WY+++G+ + AS S +G+++ + D++
Sbjct: 375 GKSLSLLSSGSVTVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMS-----ATKRDQL 429
Query: 447 SLTHITSNPSLG-DEKPVFFSIKAYISLIKPDQAMWYRACKT--CNKKVTDALGSGYW-C 502
LG E+P +F+++A + IK D + Y AC + CNKKVT+ + G W C
Sbjct: 430 KTIAQVREEQLGMSEEPSYFTLRATVVYIKQDN-LCYPACLSEGCNKKVTE-VDPGQWRC 487
Query: 503 EGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGD--DN 560
E C K RYIM+ V D +G+ +++ F++ ++G SA++L EL G N
Sbjct: 488 ERCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELPQNDGKALGN 547
Query: 561 SYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEI 614
Q TW R + Y +++R R V PV+++ E+ L + I
Sbjct: 548 VIQNATCR-TWT-FGCRAKI--DHYGDQQRIRYQVSYAKPVNYSEEASRLADII 597
Score = 373 (136.4 bits), Expect = 5.9e-32, P = 5.9e-32
Identities = 114/362 (31%), Positives = 173/362 (47%)
Query: 5 VSPDAISTILXXXXXXXXXXIPEIVVQVLDLKLTGN---RYMFNASDGKKRLKAILPSNL 61
VS A+S I I + V QV L N RY SD ++ +L
Sbjct: 8 VSVGALSGIFDATKPQISEPIVQCV-QVKPLPPQANNQERYRVVFSDISNYVQTMLAIQA 66
Query: 62 SSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKCEVVSPALEMEIKIEVKSDESGI 121
+ V G ++ +RL + N + K +K LIV EV+ E E E K ES
Sbjct: 67 NHFVTDGLLRKGCFVRLKQFQANSV--KGKKILIVLDLEVLKELGEAEKLGEPKPLESKA 124
Query: 122 IFKPK-QEDEVKKDG-PGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVS 179
+ K Q + +G G + ++ S AQ R G+ APA ++P+ +
Sbjct: 125 EEEEKPQPTTISSNGFYGAKAQNAPSQIS-SRAQHTRPMQGS-APAT-------IYPIEA 175
Query: 180 LNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDR 239
++PY WTIK R TSK ++T+ G+G +F+V L D+ G +I+AT FNE YD
Sbjct: 176 ISPYAHKWTIKARCTSKSPIKTFHGRSGDGTLFSVNLLDDSG-EIRATGFNEQCSALYDL 234
Query: 240 FQLGKVYYISRGT-LRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPID 298
FQ G+VYYIS +++A KQF + NDYE+ +PQ +FNF I
Sbjct: 235 FQEGEVYYISSPCRVQIAKKQFTNLNNDYELTFERDTLVEKAEEQND-VPQVRFNFTTIG 293
Query: 299 ELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELA 358
+L + V +D+IGV+++V T I K+ + KR++T+ D T +V +++W A
Sbjct: 294 DL-QSVEKDTTIDVIGVLKDVGETTQIVSKTTKKPYDKRELTLVDNTGFSVRLTIWGTTA 352
Query: 359 TN 360
N
Sbjct: 353 MN 354
>UNIPROTKB|I3LSJ9 [details] [associations]
symbol:I3LSJ9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
TIGRFAMs:TIGR00617 Ensembl:ENSSSCT00000030272 OMA:ETTIEEC
Uniprot:I3LSJ9
Length = 550
Score = 459 (166.6 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 136/429 (31%), Positives = 216/429 (50%)
Query: 29 VVQVLDLK--LTGN---RYMFNASDGKKRLKA-ILPSNLSSEVISGNIQNKGLIRLLDYA 82
++QV++++ TGN RY SDG L + +L + L+ V + + + ++ +
Sbjct: 25 ILQVINIRPITTGNNPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFI 84
Query: 83 LNEIPTKSEKYLI-VTKCEVVSPALEMEIKIEVKSDESGII--FK--PKQEDEVKKDGPG 137
+N + K +Y++ ++ E + S SG+ F+ P + +++G
Sbjct: 85 VNTL--KDGRYVVGFFPAALLKWGPICEQRACSPSPFSGLQGRFRASPPTSNPQQQNGSS 142
Query: 138 IVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKG 197
V A A++I + +V P+ SL PYQ WTI RVT+K
Sbjct: 143 GVAGSSTVSKAYGASKIFGKAGATSVVNSSGGTQAKVVPIASLTPYQSKWTICARVTNKS 202
Query: 198 NMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVAN 257
+RT+ N+RGEG +F++EL DE G +I+AT FNE KF+ + VYY S+GTL++AN
Sbjct: 203 QIRTWSNSRGEGKLFSIELVDESG-EIRATAFNEQVDKFFPLIDV--VYYFSKGTLKIAN 259
Query: 258 KQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQ 317
KQF V+NDYEM +P +F+F I +L + LVDIIG+ +
Sbjct: 260 KQFTAVKNDYEMTFSNETSVMPCEDGH-HLPTVQFDFTGIADLENKSKDS-LVDIIGICK 317
Query: 318 NVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAI 377
N I KS N V KR+I + D + + V +LW E A + D + + P++AI
Sbjct: 318 NYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGEDA-----DKFDGS-RQPVMAI 371
Query: 378 KSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGK--GTSMASIGSGLGSLAK 435
K +V SLS L STV+V+PD+PEA KL+ W G+ ++AS + ++
Sbjct: 372 KGARVSX----SLSILSSSTVIVNPDIPEAYKLRGWLGQRGRLRALTLASDTGAVHNINL 427
Query: 436 NGA-RSMYS 443
+ A R +YS
Sbjct: 428 SWAERCLYS 436
Score = 106 (42.4 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 500 YWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDD 559
Y CE C R I+ + D W++ F E AE I+G S L ELK ++G
Sbjct: 465 YRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKVGHV 524
Query: 560 NSYQMKLKEVTWVPHLLRVSVAQQEYN 586
+ + +++ R+ V + YN
Sbjct: 525 FDHSL-FSHISFSSFSFRIRVKLETYN 550
>GENEDB_PFALCIPARUM|PFD0470c [details] [associations]
symbol:PFD0470c "replication factor a protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005662 "DNA
replication factor A complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISS] InterPro:IPR004365 Pfam:PF01336
GO:GO:0003676 GO:GO:0006261 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 KO:K07466 RefSeq:XP_001351411.1 HSSP:P27694
ProteinModelPortal:Q9U0J0 IntAct:Q9U0J0 MINT:MINT-1572664
PRIDE:Q9U0J0 EnsemblProtists:PFD0470c:mRNA GeneID:812392
KEGG:pfa:PFD0470c EuPathDB:PlasmoDB:PF3D7_0409600
ProtClustDB:CLSZ2500502 Uniprot:Q9U0J0
Length = 1145
Score = 489 (177.2 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 146/535 (27%), Positives = 256/535 (47%)
Query: 112 IEVKSDESGIIFKPKQEDEVKKDGPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMT 171
++++ D+ G + + + ++ ++K K E + K + L N + P A+
Sbjct: 620 LKIRKDDMGSNQESRDYNYYDENSMDNIMK-KDEKILKD--KTLNRNNRKITPYQSNAVI 676
Query: 172 RRVHPLV----SLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQAT 227
+ ++ L+ Y W IK RV SK N+R Y + EG VFN+EL DEDG +I+A
Sbjct: 677 KMNDGILMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFNIELCDEDG-EIKAN 735
Query: 228 MFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFI 287
F +A K++D ++GK+Y IS+G ++VANK+F T+ +DYE+ I
Sbjct: 736 FFGKAVDKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDENSLIEILDEENENI 795
Query: 288 PQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKR 347
P+ +NF+ ID + + +N VDII VV N M I K + KRD+T+ DE+
Sbjct: 796 PKYNYNFISIDNI-KNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVTLIDESFD 854
Query: 348 TVTVSLWNELATNVGQ-ELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPD-LP 405
T+ V+LW + AT + + L DN IV K LK+G++QG L + R+ + ++PD +
Sbjct: 855 TIQVTLWEKNATIIDEMNLRDNC----IVCFKYLKIGEWQGKKLESHARTKIEINPDNIE 910
Query: 406 EAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFF 465
+A LK+W+ K SI + +++ + ++ + G K + F
Sbjct: 911 KAYILKNWW-IHNKKMICNSINLSSNYINIETQKTIQEIKKNVNLVNEEALSG--KGIMF 967
Query: 466 SIKAYISLIKPDQAMWYRACKTCNKKV-------------TDALGSGYWCEGCQKNDEEC 512
+ +I I + + Y AC CNKK+ ++ L +C C KN+
Sbjct: 968 TTYGFIDQIYNNMPV-YSACPDCNKKMISNSVDDNEYEPSSNLLEETMYCAKCNKNNIPV 1026
Query: 513 SLRYIMVARVCDGSGEAWISIFNEEAERII-GCSADELNELKSQ-LGDDNSYQMKLKE-V 569
YI + ++ D + S F A+ I+ G SA+E +L+ + + +N + E +
Sbjct: 1027 YNYYINL-KITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENFDIIEKI 1085
Query: 570 TWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVD--FAAESKFLLEEISKKVSHQN 622
R+ V + +E ++ T+ +APV ++L++ I S ++
Sbjct: 1086 KLNEFFFRIKVYMTSHMDELKKNYTIIDIAPVGKLLIDNCRYLIKSIKNLTSKRD 1140
>UNIPROTKB|Q9U0J0 [details] [associations]
symbol:PFD0470c "Replication factor a protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005662 "DNA
replication factor A complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISS] InterPro:IPR004365 Pfam:PF01336
GO:GO:0003676 GO:GO:0006261 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 KO:K07466 RefSeq:XP_001351411.1 HSSP:P27694
ProteinModelPortal:Q9U0J0 IntAct:Q9U0J0 MINT:MINT-1572664
PRIDE:Q9U0J0 EnsemblProtists:PFD0470c:mRNA GeneID:812392
KEGG:pfa:PFD0470c EuPathDB:PlasmoDB:PF3D7_0409600
ProtClustDB:CLSZ2500502 Uniprot:Q9U0J0
Length = 1145
Score = 489 (177.2 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 146/535 (27%), Positives = 256/535 (47%)
Query: 112 IEVKSDESGIIFKPKQEDEVKKDGPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMT 171
++++ D+ G + + + ++ ++K K E + K + L N + P A+
Sbjct: 620 LKIRKDDMGSNQESRDYNYYDENSMDNIMK-KDEKILKD--KTLNRNNRKITPYQSNAVI 676
Query: 172 RRVHPLV----SLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQAT 227
+ ++ L+ Y W IK RV SK N+R Y + EG VFN+EL DEDG +I+A
Sbjct: 677 KMNDGILMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFNIELCDEDG-EIKAN 735
Query: 228 MFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFI 287
F +A K++D ++GK+Y IS+G ++VANK+F T+ +DYE+ I
Sbjct: 736 FFGKAVDKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDENSLIEILDEENENI 795
Query: 288 PQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKR 347
P+ +NF+ ID + + +N VDII VV N M I K + KRD+T+ DE+
Sbjct: 796 PKYNYNFISIDNI-KNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVTLIDESFD 854
Query: 348 TVTVSLWNELATNVGQ-ELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPD-LP 405
T+ V+LW + AT + + L DN IV K LK+G++QG L + R+ + ++PD +
Sbjct: 855 TIQVTLWEKNATIIDEMNLRDNC----IVCFKYLKIGEWQGKKLESHARTKIEINPDNIE 910
Query: 406 EAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFF 465
+A LK+W+ K SI + +++ + ++ + G K + F
Sbjct: 911 KAYILKNWW-IHNKKMICNSINLSSNYINIETQKTIQEIKKNVNLVNEEALSG--KGIMF 967
Query: 466 SIKAYISLIKPDQAMWYRACKTCNKKV-------------TDALGSGYWCEGCQKNDEEC 512
+ +I I + + Y AC CNKK+ ++ L +C C KN+
Sbjct: 968 TTYGFIDQIYNNMPV-YSACPDCNKKMISNSVDDNEYEPSSNLLEETMYCAKCNKNNIPV 1026
Query: 513 SLRYIMVARVCDGSGEAWISIFNEEAERII-GCSADELNELKSQ-LGDDNSYQMKLKE-V 569
YI + ++ D + S F A+ I+ G SA+E +L+ + + +N + E +
Sbjct: 1027 YNYYINL-KITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENFDIIEKI 1085
Query: 570 TWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVD--FAAESKFLLEEISKKVSHQN 622
R+ V + +E ++ T+ +APV ++L++ I S ++
Sbjct: 1086 KLNEFFFRIKVYMTSHMDELKKNYTIIDIAPVGKLLIDNCRYLIKSIKNLTSKRD 1140
>WB|WBGene00017546 [details] [associations]
symbol:rpa-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005662 "DNA
replication factor A complex" evidence=ISS] InterPro:IPR004365
InterPro:IPR004591 Pfam:PF01336 GO:GO:0009792 GO:GO:0006898
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005662
EMBL:FO080212 GO:GO:0051096 InterPro:IPR013955 Pfam:PF08646
PIR:T34219 RefSeq:NP_495606.1 ProteinModelPortal:Q19537 SMR:Q19537
DIP:DIP-26609N IntAct:Q19537 MINT:MINT-1119512 STRING:Q19537
PaxDb:Q19537 EnsemblMetazoa:F18A1.5 GeneID:174238
KEGG:cel:CELE_F18A1.5 CTD:174238 WormBase:F18A1.5 eggNOG:COG1599
GeneTree:ENSGT00390000012403 HOGENOM:HOG000154096 InParanoid:Q19537
KO:K07466 OMA:IKARVSY NextBio:883159 TIGRFAMs:TIGR00617
Uniprot:Q19537
Length = 655
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 131/465 (28%), Positives = 224/465 (48%)
Query: 164 PAARLAMT--RRVHPLVSLNPYQGNWTIKVRVTSKGNMRTY--KNARGEGCVFNVELTDE 219
PA R A R V P+ + PY N+ I V+ K +RT+ KN + VFN E+TD
Sbjct: 211 PARRTASNTERGVMPIAMVTPYVSNFKIHGMVSRKEEIRTFPAKNTK----VFNFEITDS 266
Query: 220 DGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXX 279
+G I+ T FNE A Y YY+S G+++ ANK+F +DYE+
Sbjct: 267 NGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSDSIIEA 326
Query: 280 XXXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMS-IRRKSNNEMVPKRD 338
A P+ V + E+ Y +L+D++ VV+ + P + K+ ++ KR+
Sbjct: 327 GGELLA-APKLILKRVKLGEIAGYAG--QLIDVLVVVEKMDPEATEFTSKAGKSLI-KRE 382
Query: 339 ITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQG-ISLSTLGRST 397
+ + DE+ V ++LW + AT L+D+ + ++A K + +F G SL T G +T
Sbjct: 383 MELIDESGALVRLTLWGDEATKA---LVDDYVQK-VIAFKGVIPREFNGGFSLGT-GSAT 437
Query: 398 VLVS-PDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPS 456
++S P++ +L WY + T + + G + R++ + +
Sbjct: 438 RIISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGG-SNEAPRTIAG--LQEMQFGKDSD 494
Query: 457 LGDEKPVFFSIKAYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSL 514
GD + ++KA I+ + P A+ YR C + C KK+ G Y CE C KN +
Sbjct: 495 KGD----YATVKAMITRVNPTNAL-YRGCASEGCQKKLVGENGD-YRCEKCNKNMNKFKW 548
Query: 515 RYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPH 574
Y+M + D +G+ +++ F + A +I+G SA EL EL + D+ Y + + +VP
Sbjct: 549 LYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFVPK 606
Query: 575 LLRVSVAQQEYNNEKRQRVTVRAVAPVD---FAAESKFLLEEISK 616
+ R+ YN E RQ++TV V V+ + K ++E++ +
Sbjct: 607 MWRLRCKMDSYNEEVRQKMTVYGVDDVNQDKYIENLKQMIEQMQQ 651
>UNIPROTKB|Q19537 [details] [associations]
symbol:rpa-1 "Probable replication factor A 73 kDa subunit"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004365 InterPro:IPR004591 Pfam:PF01336
GO:GO:0009792 GO:GO:0006898 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0005662 EMBL:FO080212 GO:GO:0051096
InterPro:IPR013955 Pfam:PF08646 PIR:T34219 RefSeq:NP_495606.1
ProteinModelPortal:Q19537 SMR:Q19537 DIP:DIP-26609N IntAct:Q19537
MINT:MINT-1119512 STRING:Q19537 PaxDb:Q19537 EnsemblMetazoa:F18A1.5
GeneID:174238 KEGG:cel:CELE_F18A1.5 CTD:174238 WormBase:F18A1.5
eggNOG:COG1599 GeneTree:ENSGT00390000012403 HOGENOM:HOG000154096
InParanoid:Q19537 KO:K07466 OMA:IKARVSY NextBio:883159
TIGRFAMs:TIGR00617 Uniprot:Q19537
Length = 655
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 131/465 (28%), Positives = 224/465 (48%)
Query: 164 PAARLAMT--RRVHPLVSLNPYQGNWTIKVRVTSKGNMRTY--KNARGEGCVFNVELTDE 219
PA R A R V P+ + PY N+ I V+ K +RT+ KN + VFN E+TD
Sbjct: 211 PARRTASNTERGVMPIAMVTPYVSNFKIHGMVSRKEEIRTFPAKNTK----VFNFEITDS 266
Query: 220 DGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXX 279
+G I+ T FNE A Y YY+S G+++ ANK+F +DYE+
Sbjct: 267 NGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSDSIIEA 326
Query: 280 XXXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMS-IRRKSNNEMVPKRD 338
A P+ V + E+ Y +L+D++ VV+ + P + K+ ++ KR+
Sbjct: 327 GGELLA-APKLILKRVKLGEIAGYAG--QLIDVLVVVEKMDPEATEFTSKAGKSLI-KRE 382
Query: 339 ITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQG-ISLSTLGRST 397
+ + DE+ V ++LW + AT L+D+ + ++A K + +F G SL T G +T
Sbjct: 383 MELIDESGALVRLTLWGDEATKA---LVDDYVQK-VIAFKGVIPREFNGGFSLGT-GSAT 437
Query: 398 VLVS-PDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPS 456
++S P++ +L WY + T + + G + R++ + +
Sbjct: 438 RIISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGG-SNEAPRTIAG--LQEMQFGKDSD 494
Query: 457 LGDEKPVFFSIKAYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSL 514
GD + ++KA I+ + P A+ YR C + C KK+ G Y CE C KN +
Sbjct: 495 KGD----YATVKAMITRVNPTNAL-YRGCASEGCQKKLVGENGD-YRCEKCNKNMNKFKW 548
Query: 515 RYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPH 574
Y+M + D +G+ +++ F + A +I+G SA EL EL + D+ Y + + +VP
Sbjct: 549 LYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFVPK 606
Query: 575 LLRVSVAQQEYNNEKRQRVTVRAVAPVD---FAAESKFLLEEISK 616
+ R+ YN E RQ++TV V V+ + K ++E++ +
Sbjct: 607 MWRLRCKMDSYNEEVRQKMTVYGVDDVNQDKYIENLKQMIEQMQQ 651
>DICTYBASE|DDB_G0289513 [details] [associations]
symbol:rfa1 "putative replication factor A
DNA-binding subunit" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR004365 Pfam:PF01336
dictyBase:DDB_G0289513 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000141 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 RefSeq:XP_636195.1 ProteinModelPortal:Q54HE3 PRIDE:Q54HE3
EnsemblProtists:DDB0233023 GeneID:8627182 KEGG:ddi:DDB_G0289513
InParanoid:Q54HE3 OMA:SINFPKR Uniprot:Q54HE3
Length = 679
Score = 325 (119.5 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 116/419 (27%), Positives = 199/419 (47%)
Query: 171 TRRVHPLVSLNPYQG-NWTIKVRVTSKGNMRTY-KNARGEGCVFNVELTDEDGTQIQATM 228
T+ + + S+ P +TI+ V +K ++++ K A GEG +F++EL D G +I+
Sbjct: 208 TQPITDIESIAPGMNVQFTIRAMVRNKQPLKSWNKGANGEGKLFSMELVDSTG-EIKCAC 266
Query: 229 FNEAARK------FYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXX 282
F++++ YD F+ GKVY+I R ++ ANK + T+ + E+
Sbjct: 267 FSDSSNPNNFINALYDCFENGKVYFIQRFFVKSANKLYNTLSHQSELSINSESRVMISPD 326
Query: 283 XTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVA 342
T F P +NF I ++ + + VD+IG + N+ P ++ K E K IT+A
Sbjct: 327 QTQFTPH--YNFKKIADIEN-LEKNDTVDVIGAITNIDPIANLTSKQGKEFT-KFGITIA 382
Query: 343 DETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLS-TLGRSTVLVS 401
D+T ++ V WNE AT V ++ I+A+K +KV DF G +LS + G S L
Sbjct: 383 DDTNASINVVFWNEKATEVAPQV----KVGDIIAMKGVKVSDFSGRTLSYSFGSSFGLND 438
Query: 402 PDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEK 461
L E L++ ++ S+ S+ ++A + +S Y ++V+L I ++ +
Sbjct: 439 EQLQETSNLRAHLQNFDVN-SLQSL-----TIASSYTQSSY-EQVNLP-IFLIRTISEGS 490
Query: 462 PVFFSI-----KAYISL-----IKP-DQA--M-----------W-YRACKTCNKKVTDAL 496
P+F S K Y ++ + P QA M W Y+ACK C K +
Sbjct: 491 PLFISDPKTNKKLYRTIGQFQRVVPLSQAGEMDKGDEISSKMEWKYKACKKCKKSCPE-- 548
Query: 497 GSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQ 555
GS C C +D E + R M ++ DG + + + +R+ G SA EL ++ +
Sbjct: 549 GS---CPQCGSDDWEYAYR--MSLKLSDGDDAISVEVMGKTGDRLFGKSAAELYQMNQE 602
>TAIR|locus:2011521 [details] [associations]
symbol:AT1G52950 "AT1G52950" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] EMBL:CP002684
GO:GO:0009506 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC019018 InterPro:IPR013955 Pfam:PF08646 KO:K07466
InterPro:IPR003871 Pfam:PF02721 IPI:IPI00548251 RefSeq:NP_175703.1
UniGene:At.52167 ProteinModelPortal:Q9C926 SMR:Q9C926
EnsemblPlants:AT1G52950.1 GeneID:841728 KEGG:ath:AT1G52950
TAIR:At1g52950 HOGENOM:HOG000152224 InParanoid:Q9C926 OMA:DGNKIQA
PhylomeDB:Q9C926 ArrayExpress:Q9C926 Genevestigator:Q9C926
Uniprot:Q9C926
Length = 566
Score = 248 (92.4 bits), Expect = 7.0e-18, P = 7.0e-18
Identities = 94/391 (24%), Positives = 171/391 (43%)
Query: 179 SLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYD 238
+L P++ +W I+V++ N T +G G + + L DEDG +IQA + E K
Sbjct: 12 NLKPFKTSWCIQVKILHAWNHYT----KGSGMSYEMMLADEDGNKIQAGIKKEHLLKLQR 67
Query: 239 RFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXXXXXXXXXTAFIPQTKFNFVPID 298
++G I ++ A+ +++ + Y + + I NF D
Sbjct: 68 YVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISDEIWLDLVNFN--D 125
Query: 299 ELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELA 358
L ++ +LV++IG + NV + + K D + D + SLW + A
Sbjct: 126 VLSGTLDQNKLVNVIGQLVNVGEIQLL--DVQGKPTKKIDFQLRDTDDNRLPCSLWGKFA 183
Query: 359 TNVGQELLDNADKSPIVAIKSLKVGDFQGI-SLST-LGRSTVLVSPDLPEAKKLKSWYES 416
+ + ++ I I+ K+G ++ I S+S S V ++P L E ++ K+ S
Sbjct: 184 DQIHKVSKESVGGIVICLIRWAKLGHYKEIRSISNAFDASEVFINPILTEVEEFKNLLPS 243
Query: 417 EGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIKP 476
+G ++ L RS +R ++ + ++ + K + SI + I L
Sbjct: 244 DGLALTIMEPKPRFQPLRVREERSKQFERKTIAELKASFEVEKVK-IICSILS-IDL--- 298
Query: 477 DQAMWYRACKTCNKKVTDA---LGSG-----YWCEGCQKNDEECSLRYIMVARVCDGSGE 528
D + +Y A CNKKV + L SG Y C+ C + RY + + D +GE
Sbjct: 299 DYSWYYYAHIKCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIMDNTGE 358
Query: 529 AWISIFNEEAERIIGCSADELNELKSQLGDD 559
+ + +F+ E IIGC A EL ++ ++ D+
Sbjct: 359 SKLMLFDSFVEPIIGCPATELLDVTNEQIDE 389
>WB|WBGene00019858 [details] [associations]
symbol:R03H10.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR004365
Pfam:PF01336 GO:GO:0003690 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1599 GeneTree:ENSGT00390000002895
EMBL:FO081265 PIR:T16673 RefSeq:NP_494733.2
ProteinModelPortal:Q9GYL9 SMR:Q9GYL9 EnsemblMetazoa:R03H10.6
GeneID:187558 KEGG:cel:CELE_R03H10.6 UCSC:R03H10.6 CTD:187558
WormBase:R03H10.6 HOGENOM:HOG000152608 NextBio:935694
Uniprot:Q9GYL9
Length = 324
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 54/231 (23%), Positives = 96/231 (41%)
Query: 157 DQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVEL 216
DQN + PAA V P+ +LN N+ I RVT + R R E VF+ E+
Sbjct: 110 DQNVDAPPAA-------VTPIANLNDSVDNFKIHGRVTLMDDKR-----RPEK-VFSFEI 156
Query: 217 TDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMXXXXXXX 276
TD +G I+ F E + Y + YY++ G ++ + + + +E+
Sbjct: 157 TDVNGYTIRCVAFGELGVRLYGSIAKDQSYYLTGGKVKNGHTLYNQTGHAFEIILDEFPT 216
Query: 277 XXXXXXXTAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPK 336
+P+ N V + + + +D+I V+ ++ + N+
Sbjct: 217 IEPAPAVLT-VPKLNLNRVMLCNVQNEQYYRKPIDVIVAVEEINDFLDDYHPIENKPPVL 275
Query: 337 RDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQG 387
R++ V D++ + ++LW A + G E N IVA K + F+G
Sbjct: 276 RNMVVIDDSNFRIRLTLWGYRAMDSGVEEFQNK----IVAFKGIVPTQFEG 322
>MGI|MGI:1922428 [details] [associations]
symbol:Meiob "meiosis specific with OB domains"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1922428 GO:GO:0005737 GO:GO:0007140
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC166102
CTD:254528 eggNOG:NOG147069 HOVERGEN:HBG107750 EMBL:BC119085
EMBL:BC119087 EMBL:AK015924 IPI:IPI00137643 RefSeq:NP_083473.1
UniGene:Mm.52592 ProteinModelPortal:Q9D513 PhosphoSite:Q9D513
PRIDE:Q9D513 Ensembl:ENSMUST00000024972 GeneID:75178 KEGG:mmu:75178
UCSC:uc008ayk.1 GeneTree:ENSGT00390000001723 HOGENOM:HOG000168712
InParanoid:Q9D513 OMA:VGEPKYF OrthoDB:EOG444KKB NextBio:342394
Bgee:Q9D513 Genevestigator:Q9D513 Uniprot:Q9D513
Length = 470
Score = 137 (53.3 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 67/279 (24%), Positives = 126/279 (45%)
Query: 301 GRYVNGTELVDIIGVVQNVS-P---TMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNE 356
G ++G +++++ V++V P T S RRK + ++ + DET+ + T++ W+
Sbjct: 160 GHSLDG-RIINVLAAVRSVGEPKYFTTSDRRKGQ-----RCEVKLFDETEPSFTMTCWDN 213
Query: 357 LATNVGQELLDNADKSPIVAIK-SLKVGDFQGISLSTLGRSTVL-VSPDLPEAKKLKSWY 414
+ + Q + A ++ I A + FQ +T+ T++ V+PD PEA L + Y
Sbjct: 214 ESILLAQSWM--ARETVIFASDVRINFNKFQNCMAATVISKTIITVNPDTPEANILLN-Y 270
Query: 415 ESEGKGTSMAS-IGSGLG-SLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYIS 472
E K T++A I S L S+ N +Y+ V + + S G P + + AYIS
Sbjct: 271 IRENKETNVADEIDSYLKESVNLNTIVDVYT--VEQLKVKALKSEGKADPFYGILYAYIS 328
Query: 473 LIKPDQA---MWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529
+ D + C +C V +A + C + L + ++ + D +G
Sbjct: 329 TLNIDDETTKVVRNRCSSCGYIVNEASNTCTICNQDSSRLKSFFLSFDVLVDLTDHTGTL 388
Query: 530 W-ISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLK 567
S+ AE +GC+ +E + S+ +Q+ L+
Sbjct: 389 HSCSLSGSIAEETLGCTINEFLTMTSEQKTKLKWQLLLE 427
>RGD|1583204 [details] [associations]
symbol:Meiob "meiosis specific with OB domains" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISO]
REFSEQ:NM_001115033 Ncbi:NP_001108505
Length = 470
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 67/279 (24%), Positives = 123/279 (44%)
Query: 301 GRYVNGTELVDIIGVVQNVS-P---TMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNE 356
G ++G +++++ V++V P T S RRK + ++ + DET+ + T++ W+
Sbjct: 160 GHSLDG-RIINVLAAVRSVGEPKYFTTSDRRKGQ-----RCEVKLFDETEPSFTMTCWDN 213
Query: 357 LATNVGQELLDNADKSPIVAIK-SLKVGDFQGISLSTLGRSTVL-VSPDLPEAKKLKSWY 414
+ + Q + A ++ I A + FQ +T+ T++ V+PD PEA L ++
Sbjct: 214 ESILLAQSWM--ARETVIFASDVRINFNKFQNCMAATVISKTIITVNPDTPEANILLNFI 271
Query: 415 ESEGKGTSMAS-IGSGLG-SLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYIS 472
E K TS+A I S L S+ N ++Y+ N G P + + AYIS
Sbjct: 272 R-ENKETSIADEIDSYLKESVNLNTIVNVYTVEQLKGKALENE--GKVDPFYGILYAYIS 328
Query: 473 LIKPDQA---MWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529
+ D + C +C V DA + C L + ++ + D +G
Sbjct: 329 TLNIDDETTKVVRNRCSSCGYIVNDASNTCTICSKDSSRSRSFCLSFDVLVDLTDHTGTL 388
Query: 530 W-ISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLK 567
S+ AE +GC+ +E + S+ +Q+ L+
Sbjct: 389 RSCSLSGSVAEETLGCTINEFLTMTSEQKTKLKWQLLLE 427
>RGD|1590524 [details] [associations]
symbol:LOC681837 "similar to holdem CG15329-PA" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0007140 "male meiosis" evidence=ISS] RGD:1590524 GO:GO:0005737
GO:GO:0007140 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
CTD:254528 eggNOG:NOG147069 HOGENOM:HOG000111901 HOVERGEN:HBG107750
GeneTree:ENSGT00390000001723 OrthoDB:EOG444KKB EMBL:BC158604
IPI:IPI00779670 RefSeq:NP_001108505.1 UniGene:Rn.200954
ProteinModelPortal:B0BMX9 PRIDE:B0BMX9 Ensembl:ENSRNOT00000060551
GeneID:685099 KEGG:rno:685099 NextBio:728958 Genevestigator:B0BMX9
Uniprot:B0BMX9
Length = 470
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 67/279 (24%), Positives = 123/279 (44%)
Query: 301 GRYVNGTELVDIIGVVQNVS-P---TMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNE 356
G ++G +++++ V++V P T S RRK + ++ + DET+ + T++ W+
Sbjct: 160 GHSLDG-RIINVLAAVRSVGEPKYFTTSDRRKGQ-----RCEVKLFDETEPSFTMTCWDN 213
Query: 357 LATNVGQELLDNADKSPIVAIK-SLKVGDFQGISLSTLGRSTVL-VSPDLPEAKKLKSWY 414
+ + Q + A ++ I A + FQ +T+ T++ V+PD PEA L ++
Sbjct: 214 ESILLAQSWM--ARETVIFASDVRINFNKFQNCMAATVISKTIITVNPDTPEANILLNFI 271
Query: 415 ESEGKGTSMAS-IGSGLG-SLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYIS 472
E K TS+A I S L S+ N ++Y+ N G P + + AYIS
Sbjct: 272 R-ENKETSIADEIDSYLKESVNLNTIVNVYTVEQLKGKALENE--GKVDPFYGILYAYIS 328
Query: 473 LIKPDQA---MWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529
+ D + C +C V DA + C L + ++ + D +G
Sbjct: 329 TLNIDDETTKVVRNRCSSCGYIVNDASNTCTICSKDSSRSRSFCLSFDVLVDLTDHTGTL 388
Query: 530 W-ISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLK 567
S+ AE +GC+ +E + S+ +Q+ L+
Sbjct: 389 RSCSLSGSVAEETLGCTINEFLTMTSEQKTKLKWQLLLE 427
>TAIR|locus:1005716636 [details] [associations]
symbol:AT2G05642 "AT2G05642" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] EMBL:CP002685 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646 IPI:IPI00531803
RefSeq:NP_850486.2 UniGene:At.47091 ProteinModelPortal:F4IHC4
EnsemblPlants:AT2G05642.1 GeneID:819430 KEGG:ath:AT2G05642
OMA:ITEFKES InterPro:IPR003871 Pfam:PF02721 Uniprot:F4IHC4
Length = 532
Score = 98 (39.6 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 63/256 (24%), Positives = 112/256 (43%)
Query: 338 DITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSL-KVGD-FQGISLS-TLG 394
++ + D + + V+LW + A ++ + D S IV + SL K+ F+ + L+ T+
Sbjct: 127 NLQLRDLGESVIDVTLWEKWAEDLYSYVKGYKDGS-IVLVGSLMKIKTYFKNVYLTFTIR 185
Query: 395 RSTVLVSPDLPEAKKLKSWYESE-GKGTSMASIGSGLGSLAKNGARSM-----YSDRVSL 448
S + + KS + ++ +S+A I SLAK+ ++ + S
Sbjct: 186 DSLIWFLIFSRQDLCPKSSFSTKLFINSSIAEITEFKESLAKSDCLALTTISTITSSSSS 245
Query: 449 THITSNPSLGDEKPVF-------FSIKAYISLIKPDQAMWYRACKTCNKKV-------TD 494
H + SL D+K + +I A I I +Y C C KKV T+
Sbjct: 246 KHSKPSFSLRDQKTIADINSGGACNIIASIFSIDTKVPWFYIGCNICFKKVSPYFNPETE 305
Query: 495 ALGSG-YWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELK 553
+ +G Y CE C S R+ + V D +GEA +F+++ ++I SA EL E +
Sbjct: 306 EIEAGKYECEKCDTFVTTTSTRFRVQVTVLDHTGEASFLLFDQDVIKLIHKSAYELLEQQ 365
Query: 554 SQLGDDNSYQMKLKEV 569
Q + +L ++
Sbjct: 366 VQFNRSDKIPQELLDL 381
Score = 67 (28.6 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 20/101 (19%), Positives = 46/101 (45%)
Query: 170 MTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCV-FNVELTDEDGTQIQATM 228
M + P+ L+ + +KVR+ +K R + + ++ L D+ G +IQA++
Sbjct: 1 MPLEITPVSQLHSHLSTCKVKVRIARL--WAYHKKDRPKDIMGIDLLLVDDKGERIQASI 58
Query: 229 FNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEM 269
++ KF ++ + G Y I + ++ + Y++
Sbjct: 59 RSQLLSKFQEKLEEGDCYMIMNFEISDNGGSYRASSHPYKI 99
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 623 599 0.00085 120 3 11 23 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 621 (66 KB)
Total size of DFA: 314 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 50.81u 0.10s 50.91t Elapsed: 00:00:02
Total cpu time: 50.82u 0.10s 50.92t Elapsed: 00:00:02
Start: Sat May 11 07:42:02 2013 End: Sat May 11 07:42:04 2013