BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006973
(623 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ssb1 PE=1 SV=1
Length = 609
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 201/609 (33%), Positives = 322/609 (52%), Gaps = 30/609 (4%)
Query: 18 SPDSSSDIPEIVVQVLDLK-LTGN-------RYMFNASDGKKRLKAILPSNLSSEVISGN 69
+ D+SS P ++QVL +K L N RY SD +++L + L+ V
Sbjct: 15 TSDASSFPPNPILQVLTVKELNSNPTSGAPKRYRVVLSDSINYAQSMLSTQLNHLVAENK 74
Query: 70 IQNKGLIRLLDYALNEIPTKSEKYLIVTKCEVVSPALEMEIKIEVKSDESGIIFKPKQED 129
+Q ++L + +N + K K LIV V++ M+ E+ + +Q +
Sbjct: 75 LQKGAFVQLTQFTVNVM--KERKILIVLGLNVLTELGVMDKIGNPAGLETVDALRQQQNE 132
Query: 130 EVKKDGP--GIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNW 187
+ P GI +AA PAA +++ ++P+ L+PYQ W
Sbjct: 133 QNNASAPRTGISTSTNSFYGNNAAATAPAPPPMMKKPAAPNSLSTIIYPIEGLSPYQNKW 192
Query: 188 TIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYY 247
TI+ RVT+K ++ + N RGEG +F+V L DE G +I+AT FN+ FYD Q G VYY
Sbjct: 193 TIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESG-EIRATGFNDQVDAFYDILQEGSVYY 251
Query: 248 ISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDELGRYVNGT 307
ISR + +A KQ+ VQN+YE+ ++E+ +A ++TA +P KF+FV + E+G V
Sbjct: 252 ISRCRVNIAKKQYTNVQNEYELMFERDTEIRKAEDQTA-VPVAKFSFVSLQEVGD-VAKD 309
Query: 308 ELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLD 367
++D+IGV+QNV P I ++ + KRDIT+ D+T + V+LW + A
Sbjct: 310 AVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEF------ 363
Query: 368 NADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIG 427
+ + I+A K +KV DFQG SLS L ST+ V PD+ E+ LK WY+ +G+G A
Sbjct: 364 SVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHS 423
Query: 428 SGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQAMWYRACKT 487
+L+ G RS ++R ++ + + E P +FS+K I I+ + + Y AC
Sbjct: 424 VISSTLSTTG-RS--AERKNIAEVQAEHLGMSETPDYFSLKGTIVYIRK-KNVSYPACPA 479
Query: 488 --CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCS 545
CNKKV D GS + CE C K + RYI+ V D +G+ W+++F++ + I+ +
Sbjct: 480 ADCNKKVFDQGGS-WRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKT 538
Query: 546 ADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAA 605
ADELN+L Q D+N++ + E ++P++ + Q + E R R TV ++ +D+
Sbjct: 539 ADELNDL--QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKE 596
Query: 606 ESKFLLEEI 614
ESK L+ I
Sbjct: 597 ESKRLINFI 605
>sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens
GN=RPA1 PE=1 SV=2
Length = 616
Score = 285 bits (728), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 165/449 (36%), Positives = 251/449 (55%), Gaps = 24/449 (5%)
Query: 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA 232
+V P+ SL PYQ WTI RVT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE
Sbjct: 183 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQ 241
Query: 233 ARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKF 292
KF+ ++ KVYY S+GTL++ANKQF V+NDYEM N + V ++ +P +F
Sbjct: 242 VDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDD-HHLPTVQF 300
Query: 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVS 352
+F ID+L + LVDIIG+ ++ I +SNN V KR+I + D + + VT +
Sbjct: 301 DFTGIDDLENKSKDS-LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 353 LWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKS 412
LW E A + + P++AIK +V DF G SLS L ST++ +PD+PEA KL+
Sbjct: 360 LWGEDADKF------DGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRG 413
Query: 413 WYESEGK---GTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKA 469
W+++EG+ G S++ + SG + +++Y + + N GD KP +FS A
Sbjct: 414 WFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVK------SENLGQGD-KPDYFSSVA 466
Query: 470 YISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSG 527
+ ++ + M Y+AC T CNKKV D Y CE C R I+ + D
Sbjct: 467 TVVYLRKENCM-YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQE 525
Query: 528 EAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNN 587
W++ F E AE I+G +A L ELK + ++ +++ + + + RV V + YN+
Sbjct: 526 NQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYND 583
Query: 588 EKRQRVTVRAVAPVDFAAESKFLLEEISK 616
E R + TV V PVD+ + L+ I +
Sbjct: 584 ESRIKATVMDVKPVDYREYGRRLVMSIRR 612
>sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii
GN=RPA1 PE=2 SV=1
Length = 616
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/449 (36%), Positives = 249/449 (55%), Gaps = 24/449 (5%)
Query: 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA 232
+V P+ SL PYQ WTI RVT+K +RT+ N+RGE +F++EL DE G +I+AT FNE
Sbjct: 183 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEEKLFSLELVDESG-EIRATAFNEQ 241
Query: 233 ARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKF 292
KF+ ++ KVYY S+GTL++ANKQF V+NDYEM N + V ++ +P +F
Sbjct: 242 VDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDD-HHLPTVQF 300
Query: 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVS 352
+F ID+L + LVDIIG+ ++ I +SNN V KR+I + D + + VT +
Sbjct: 301 DFTGIDDLENKSKDS-LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 353 LWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKS 412
LW E A + + P++AIK +V DF G SLS L ST++ +PD+PEA KL+
Sbjct: 360 LWGEDADKF------DGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRG 413
Query: 413 WYESEGK---GTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKA 469
W+++EG+ G S++ + SG +++Y + + N GD KP +FS A
Sbjct: 414 WFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVK------SENLGQGD-KPDYFSSVA 466
Query: 470 YISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSG 527
+ ++ + M Y+AC T CNKKV D Y CE C R I+ + D
Sbjct: 467 TVVYLRKENCM-YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQE 525
Query: 528 EAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNN 587
W++ F E AE I+G +A L ELK + ++ +++ + + + RV V + YN+
Sbjct: 526 NQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYND 583
Query: 588 EKRQRVTVRAVAPVDFAAESKFLLEEISK 616
E R + TV V PVD+ + L+ I +
Sbjct: 584 ESRIKATVMDVKPVDYREYGRRLVMSIRR 612
>sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus
tropicalis GN=rpa1 PE=2 SV=1
Length = 609
Score = 279 bits (714), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 167/450 (37%), Positives = 256/450 (56%), Gaps = 19/450 (4%)
Query: 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA 232
+V P+ SLNPYQ WT++ RVT+KG +RT+ N+RGEG +F++E+ DE G +I+AT FNE
Sbjct: 175 KVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVDESG-EIRATAFNEQ 233
Query: 233 ARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKF 292
A KF+ ++ KVYY S+GTL++ANKQ+ +V+NDYEM N + V +++A +P +F
Sbjct: 234 ADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSV-IPCDDSADVPMVQF 292
Query: 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVS 352
FVPI EL N ++DIIG+ +N + +SNN V KR+I + D + + V+ +
Sbjct: 293 EFVPIGEL-ESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNINLMDSSGKVVSTT 351
Query: 353 LWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKS 412
LW E A + + P+VAIK ++ DF G SLS L STV+++PD+PEA KL++
Sbjct: 352 LWGEDADKF------DGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRA 405
Query: 413 WYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYIS 472
W++SEG+ SI S ++ G ++ SL + + EK +F+ A I
Sbjct: 406 WFDSEGQVVEGTSI-----SESRGGTGGGNTNWKSLLEVKTENLGHGEKADYFTSVATIV 460
Query: 473 LIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAW 530
++ + + Y+AC + CNKKV D + CE C K R I+ A + D W
Sbjct: 461 YLRKENCL-YQACPSQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQW 519
Query: 531 ISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKR 590
I+ F E AE I+G +A L ELK + ++ +Y + + + R+ V + YN+E R
Sbjct: 520 ITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRIRVKLETYNDESR 577
Query: 591 QRVTVRAVAPVDFAAESKFLLEEISKKVSH 620
+ T V PVD S+ L+ I K +
Sbjct: 578 IKATAMDVKPVDHKEYSRRLIMNIRKMAAQ 607
>sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis
GN=rpa1 PE=1 SV=1
Length = 609
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 171/454 (37%), Positives = 255/454 (56%), Gaps = 26/454 (5%)
Query: 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA 232
+V P+ SLNPYQ WT++ RVT+KG +RT+ N+RGEG +F++E+ DE G +I+AT FNE
Sbjct: 174 KVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVDESG-EIRATAFNEQ 232
Query: 233 ARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKF 292
A KF+ ++ KVYY S+GTL++ANKQ+ +V+NDYEM N + V +++A +P +F
Sbjct: 233 ADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSV-IPCDDSADVPMVQF 291
Query: 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVS 352
FV I EL N ++DIIGV +NV + KSNN V KR I + D + + V+ +
Sbjct: 292 EFVSIGEL-ESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTT 350
Query: 353 LWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKS 412
LW E A + + P+VAIK ++ DF G SLS L STV+++PD+PEA KL++
Sbjct: 351 LWGEDADKF------DGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRA 404
Query: 413 WYESEGK---GTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIK 468
W++SEG+ GTS++ G +S+ N +LG EK +F+
Sbjct: 405 WFDSEGQVVEGTSISESRGGGTGGGNTNWKSLLE--------VKNENLGHGEKADYFTSV 456
Query: 469 AYISLIKPDQAMWYRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGS 526
A I ++ + + Y+AC + CNKKV D + CE C K R I+ A + D
Sbjct: 457 ATIVYLRKENCL-YQACPSQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFG 515
Query: 527 GEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYN 586
WI+ F E AE I+G +A L ELK + ++ +Y + + + R V + YN
Sbjct: 516 ENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRARVKLETYN 573
Query: 587 NEKRQRVTVRAVAPVDFAAESKFLLEEISKKVSH 620
+E R + T V PVD S+ L+ I K +
Sbjct: 574 DESRIKATAVDVKPVDHKEYSRRLIMNIRKMATQ 607
>sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1
Length = 621
Score = 275 bits (704), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 180/590 (30%), Positives = 313/590 (53%), Gaps = 39/590 (6%)
Query: 47 SDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLDYALNEIPTKSEKY-LIVTKCEVVSPA 105
SDG +KA+L + +S+ S +Q +IR++ A I + +KY L+V E+V
Sbjct: 51 SDGIYHMKALLRNQAASKFQSMELQRGDIIRVI-IAEPAIVRERKKYVLLVDDFELVQSR 109
Query: 106 LEMEIKIEVKSDESGIIFKPKQEDEVKKD----GPGIVLKPKQEMVAKSAAQILRDQNGN 161
+M + D + + +E KD G V Q + + + N N
Sbjct: 110 ADMVNQTSTFLDN----YFSEHPNETLKDEDITDSGNV--ANQTNASNAGVPDMLHSNSN 163
Query: 162 MAPAAR--------LAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFN 213
+ R TR + + L+PYQ WTIK RV+ KG ++T+ N RG+G +FN
Sbjct: 164 LNANERKFANENPNSQKTRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFN 223
Query: 214 VELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNE 273
V D G +I+AT FN+ A KF + Q GKVYY+S+ L+ A QF + + YE+NL+
Sbjct: 224 VNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDR 282
Query: 274 NSEVEEAVNETAFIPQTKFNFVPIDEL-GRYVNGTELVDIIGVVQNVSPTMSIRRKSNNE 332
++ +EE +E+ +P+T FNF+ +D + + VN VD++G++Q ++P + ++ +
Sbjct: 283 DTVIEECFDESN-VPKTHFNFIKLDAIQNQEVNSN--VDVLGIIQTINPHFELTSRAGKK 339
Query: 333 MVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLST 392
+RDIT+ D++ +++V LWN+ Q L N + + AIK ++V DF G SLS
Sbjct: 340 F-DRRDITIVDDSGFSISVGLWNQ------QALDFNLPEGSVAAIKGVRVTDFGGKSLSM 392
Query: 393 LGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGS--GLGSLAKNGARSMYSDRVSLTH 450
ST++ +P++PEA LK WY+S+G+ + ++ G+G + + R+++
Sbjct: 393 GFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIAR 452
Query: 451 ITSNPSLGDEKPVFFSIKAYISLIKPDQAMWYRAC--KTCNKKVTDALGSGYWCEGCQKN 508
+ EK FFS+KA IS +K D Y AC + CNKKV + + CE C N
Sbjct: 453 AQAENLGRSEKGDFFSVKAAISFLKVDN-FAYPACSNENCNKKVLEQPDGTWRCEKCDTN 511
Query: 509 DEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKE 568
+ + RYI+ + D + + W+++F+++A++++G A+ L LK + D N + +
Sbjct: 512 NARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQS 569
Query: 569 VTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISKKV 618
+ + R+ + YN++ R R TV + +++ AE+ +L +E+SK +
Sbjct: 570 IQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKAL 619
>sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus
GN=Rpa1 PE=2 SV=1
Length = 623
Score = 269 bits (688), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/449 (36%), Positives = 246/449 (54%), Gaps = 20/449 (4%)
Query: 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA 232
+V P+ SL PYQ WTI RVT+K +RT+ N+RGEG +F++EL DE G +I+AT FNE
Sbjct: 192 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQ 250
Query: 233 ARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKF 292
KF+ ++ KVYY S+G L++ANKQF V+NDYEM N + V + +P +F
Sbjct: 251 VDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSV-LPCEDGHHLPTVQF 309
Query: 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVS 352
+F I +L LVDIIG+ ++ ++ I KSNN V KR+I + D + + VT +
Sbjct: 310 DFTGIGDLESKAKDA-LVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 368
Query: 353 LWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKS 412
LW E A + + P++AIK +V DF G SLS L STV+V+PD+PEA KL+
Sbjct: 369 LWGEDADKF------DGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRG 422
Query: 413 WYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYI 471
W++SEG+ SI S ++G + H + +LG +K +FS A +
Sbjct: 423 WFDSEGQALDGVSI-----SDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAV 477
Query: 472 SLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529
++ + M Y+AC T CNKKV D Y CE C + R I+ A + D
Sbjct: 478 VFLRKENCM-YQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQ 536
Query: 530 WISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEK 589
W++ F E AE I+G + L ELK + ++ +++ + + R+ V + YN+E
Sbjct: 537 WVTCFQESAEAILGQNTMYLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDES 594
Query: 590 RQRVTVRAVAPVDFAAESKFLLEEISKKV 618
R + TV V PVDF + L+ I K +
Sbjct: 595 RIKATVMDVKPVDFRDYGRRLIANIRKNM 623
>sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio
GN=rpa1 PE=1 SV=1
Length = 601
Score = 262 bits (670), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 188/600 (31%), Positives = 300/600 (50%), Gaps = 64/600 (10%)
Query: 40 NRYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKC 99
+R+ SDG + + + S + + N + +L ++ + + +++
Sbjct: 39 SRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCVCVLKRSVTNVLKDGRRVVVILDI 98
Query: 100 EVVSPALEMEIKIEVKSDESGIIFKPKQEDEVKKDGPGIVLKPKQEMVAKSAAQILRDQN 159
EV+ A +M G I P E + P P A+ L+ QN
Sbjct: 99 EVLKSADQM----------PGKIGDPTPYVEGQSKAPSTAPAP--------TARPLQPQN 140
Query: 160 GN----------------MAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYK 203
G+ MA + +V P+ SLNPYQ WTI+ RVT+K +RT+
Sbjct: 141 GSDGSTYRPSAQSFGKKPMAAPNTPGGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWS 200
Query: 204 NARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTV 263
N+RG+G +F++EL DE G +I+AT FN KF+ + GKV+YIS+GTL++ANKQF ++
Sbjct: 201 NSRGDGKLFSMELVDESG-EIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSL 259
Query: 264 QNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTM 323
+NDYEM LN + + ++ +P + +FV I +L T ++D+IGV +N
Sbjct: 260 KNDYEMTLNGETSI-IPCEDSNDVPMLQCDFVSIADLESREKDT-ILDVIGVCKNAEDVA 317
Query: 324 SIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVG 383
I K++ E V KR+I + D + R + +++W A E D + + PI+AIK ++
Sbjct: 318 RIMTKNSRE-VSKRNIQLIDMSGRVIQLTMWGSDA-----ETFDGSGQ-PILAIKGARLS 370
Query: 384 DFQGISLSTLGRSTVLVSPDLPEAKKLKSWYESEGK---GTSMASI-GSGLGSLAKNGAR 439
DF G SLSTL STV+++PD+PEA KL+ WY+ EG G SM + G G G
Sbjct: 371 DFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGGGG------- 423
Query: 440 SMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRAC--KTCNKKVTDAL 496
++ +L + N LG +K +FS A I I+ + + Y+AC K CNKKV D
Sbjct: 424 --NTNWKTLAEV-KNEHLGHGDKADYFSCIATIVYIRKENCL-YQACPSKDCNKKVVDQQ 479
Query: 497 GSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQL 556
+ CE C K + R ++ A + D W++ F + AE ++G ++ L +LK
Sbjct: 480 NGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDT- 538
Query: 557 GDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 616
++ ++ + + + R V + YN+E R +VTV PVD SK L+ I K
Sbjct: 539 -NEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRK 597
>sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila
melanogaster GN=RpA-70 PE=1 SV=1
Length = 603
Score = 255 bits (652), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 182/601 (30%), Positives = 312/601 (51%), Gaps = 46/601 (7%)
Query: 29 VVQVLDLKLTGN-----RYMFNASDGKK-RLKAILPSNLSSEVISGNIQNKGLIRLLDYA 82
V+Q+L +K + RY SDGK A+L S L+ +G ++ +++L Y
Sbjct: 24 VLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYV 83
Query: 83 LNEIPT--KSEKYLIVTKCEVVSPALEMEIKIEVKSDESGIIFKP-KQEDEVKKD-GPGI 138
+ + ++ LI+++ VV+P E++ KI +P E+ K+D P
Sbjct: 84 TSLVGKDGAGKRVLIISELTVVNPGAEVKSKIG----------EPVTYENAAKQDLAPKP 133
Query: 139 VLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGN 198
+ + +AK + N M + MT HP+ SL+PYQ W IK RVTSK
Sbjct: 134 AVTSNSKPIAKKEPSHNNNNNIVMNSSINSGMT---HPISSLSPYQNKWVIKARVTSKSG 190
Query: 199 MRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANK 258
+RT+ NARGEG +F+++L DE G +I+AT F E KFYD Q+ VYYIS+ L+ ANK
Sbjct: 191 IRTWSNARGEGKLFSMDLMDESG-EIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANK 249
Query: 259 QFKTVQNDYEMNLNENSEVE--EAVNETAFIPQTKFNFVPIDELGRYVNGTELVDIIGVV 316
Q+ ++ N YEM + + V+ E ++ IP+ K+N VPI ++ N VD IG+
Sbjct: 250 QYSSLNNAYEMTFSGETVVQLCEDTDDDP-IPEIKYNLVPISDVSGMENKAA-VDTIGIC 307
Query: 317 QNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVA 376
+ V S ++ N+ KRDIT+ D + ++++LW + A N + P++
Sbjct: 308 KEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHV------QPVIL 361
Query: 377 IKSLKVGDFQGISLSTLGRSTVL-VSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAK 435
+K ++ +F G +LG +++ ++PD+PEA KL+ W+++ G G S+A++ S A+
Sbjct: 362 VKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDN-GGGDSVANMVS-----AR 415
Query: 436 NGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQAMWYRAC--KTCNKKVT 493
G S ++ ++L + +KP +F KA + ++K + A +YRAC CNKKV
Sbjct: 416 TGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENA-FYRACPQSDCNKKVV 474
Query: 494 DALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELK 553
D + CE C R ++ + D + W+S FNE E+++G ++ E+ E
Sbjct: 475 DEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEAL 534
Query: 554 SQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEE 613
D + + + H+ ++ + Y + R ++TV++VAP++ +K LL+E
Sbjct: 535 EN--DPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKE 592
Query: 614 I 614
+
Sbjct: 593 L 593
>sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus
GN=RPA1 PE=2 SV=1
Length = 614
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/447 (35%), Positives = 249/447 (55%), Gaps = 20/447 (4%)
Query: 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA 232
+V P+ SLNPYQ WTI RVT KG +RT+ N+RGEG +F++EL DE G +I+AT FN+
Sbjct: 180 KVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESG-EIRATAFNDQ 238
Query: 233 ARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKF 292
A KF+ +L KVYY ++G L+ ANKQ+ V+NDYE+ N + V ++ +P +F
Sbjct: 239 ADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFNNETSV-VPCDDAQHLPSVQF 297
Query: 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVS 352
+FV I +L + +VD+IG+ ++ I K++N V KR++ + D + + VT +
Sbjct: 298 DFVSISDLENTPKDS-IVDVIGICKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTAT 356
Query: 353 LWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKS 412
LW A E D + + P++AIK +V DF G SLS L STV+V+PD PEA KL+
Sbjct: 357 LWGNEA-----EKFDGS-RQPVIAIKGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRG 410
Query: 413 WYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYI 471
W++SEG+ ASI S + G+ S + + + LG +K +FS I
Sbjct: 411 WFDSEGQLLECASI-----SDVRGGSASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTI 465
Query: 472 SLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529
++ + M Y+AC + CNKKV D Y CE C + R +++ + D
Sbjct: 466 VHLRKENCM-YQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQ 524
Query: 530 WISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEK 589
W++ F E AE I+G SA L ELK + ++ +++ + + + ++ V + YN+E
Sbjct: 525 WVTCFQESAEFILGQSATFLGELKDK--NEQAFEEVFQNANFNTYEFKIRVKLETYNDES 582
Query: 590 RQRVTVRAVAPVDFAAESKFLLEEISK 616
R + T V PV++ SK L+ I +
Sbjct: 583 RIKATALDVKPVNYREYSKRLIASIRR 609
>sp|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit OS=Crithidia fasciculata
GN=RPA1 PE=1 SV=1
Length = 467
Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 220/424 (51%), Gaps = 22/424 (5%)
Query: 171 TRRVHPLVSLNPY-QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMF 229
+ ++ P+ SL P+ G W I+ RV K ++RT+ +G +F+ L DE I+AT+F
Sbjct: 6 SHQIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLIDESAA-IRATVF 64
Query: 230 NEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNET--AFI 287
N+A F G+VYY S G ++ AN++F V NDYE+ + SEV A ++ A +
Sbjct: 65 NDAVDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAAL 124
Query: 288 PQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKR 347
P ++NFVPI+ L + G+ LVD++GVV V SI +KS + KR++ + D +
Sbjct: 125 PMQRYNFVPIELLKQREVGS-LVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMSA- 182
Query: 348 TVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSP-DLPE 406
V V+ WN+ A N +VA++ LKVG F G++LS+ ++ + V+P DLP+
Sbjct: 183 AVEVTFWNDEAKAW------NYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDVNPADLPD 236
Query: 407 AKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFS 466
KKL +WY S G G ++ S+ S G R L I S KP +
Sbjct: 237 VKKLATWYVSTG-GANVVSLSSQGLGAGGGGGGEGNRGRKYLDEIQSEGIGRGAKPEYVD 295
Query: 467 IKAYISLIKPDQAMWYRACKTCNKKVTD--ALGSGYWCEGCQKNDEECSLRYIMVARVCD 524
++ K D A WY AC TCNKKVT+ A G + CE C + RY++ +V D
Sbjct: 296 VRCVPIYFKQD-AQWYDACPTCNKKVTEEGAQGDRFRCEKCDATVVP-TQRYLVSIQVTD 353
Query: 525 GSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTW-VPHLLRVSVAQQ 583
+ W+++FNE G A +ELK + +D Y KL + P ++R+ V ++
Sbjct: 354 NVSQVWLTLFNEAGVEFFGMEA---SELKRRAQEDPLYIAKLAQARMNRPVVMRLRVKEE 410
Query: 584 EYNN 587
N
Sbjct: 411 TNAN 414
>sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit OS=Caenorhabditis
elegans GN=rpa-1 PE=1 SV=1
Length = 655
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 220/451 (48%), Gaps = 39/451 (8%)
Query: 164 PAARLA--MTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTY--KNARGEGCVFNVELTDE 219
PA R A R V P+ + PY N+ I V+ K +RT+ KN + VFN E+TD
Sbjct: 211 PARRTASNTERGVMPIAMVTPYVSNFKIHGMVSRKEEIRTFPAKNTK----VFNFEITDS 266
Query: 220 DGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEE 279
+G I+ T FNE A Y YY+S G+++ ANK+F +DYE+ L +S + E
Sbjct: 267 NGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSDS-IIE 325
Query: 280 AVNETAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDI 339
A E P+ V + E+ Y +L+D++ VV+ + P + + + KR++
Sbjct: 326 AGGELLAAPKLILKRVKLGEIAGYAG--QLIDVLVVVEKMDPEATEFTSKAGKSLIKREM 383
Query: 340 TVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQ-GISLSTLGRSTV 398
+ DE+ V ++LW + AT + L+D+ + ++A K + +F G SL T + +
Sbjct: 384 ELIDESGALVRLTLWGDEAT---KALVDDYVQK-VIAFKGVIPREFNGGFSLGTGSATRI 439
Query: 399 LVSPDLPEAKKLKSWYE-----SEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITS 453
+ P++ +L WY +E K S A+ GS G + M + S
Sbjct: 440 ISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFGKDS------ 493
Query: 454 NPSLGDEKPVFFSIKAYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEE 511
+K + ++KA I+ + P A+ YR C + C KK+ G Y CE C KN +
Sbjct: 494 ------DKGDYATVKAMITRVNPTNAL-YRGCASEGCQKKLVGENGD-YRCEKCNKNMNK 545
Query: 512 CSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTW 571
Y+M + D +G+ +++ F + A +I+G SA EL EL + D+ Y + + +
Sbjct: 546 FKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQF 603
Query: 572 VPHLLRVSVAQQEYNNEKRQRVTVRAVAPVD 602
VP + R+ YN E RQ++TV V V+
Sbjct: 604 VPKMWRLRCKMDSYNEEVRQKMTVYGVDDVN 634
>sp|O97472|RFA1_CAEBR Probable replication factor A 73 kDa subunit OS=Caenorhabditis
briggsae GN=rpa-1 PE=3 SV=1
Length = 658
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/438 (27%), Positives = 217/438 (49%), Gaps = 31/438 (7%)
Query: 172 RRVHPLVSLNPYQGNWTIKVRVTSKGNMRTY--KNARGEGCVFNVELTDEDGTQIQATMF 229
R V P+ + PY N+ I V+ K +++ KN + +FN E+TD +G I+ T F
Sbjct: 221 RGVIPIAMVTPYVNNFRIHGMVSRKEDIKNIPAKNMK----IFNFEITDSNGDTIRCTAF 276
Query: 230 NEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQ 289
NE A F+ YY+S G++R ANK+F +DYE+ L N V EA E P+
Sbjct: 277 NETAESFHSTITENLSYYLSGGSVRQANKKFNNTGHDYEITL-RNDSVVEAGGELLAAPK 335
Query: 290 TKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTV 349
V + E+ + E++D++ +V+ + + + + KR++ + DE++ V
Sbjct: 336 LNLKRVSLAEIAGHCG--EMIDVLVIVEKMDAEATEFTSKAGKTLTKREMELIDESQALV 393
Query: 350 TVSLWNELATNVGQELLDNAD--KSPIVAIKSLKVGDFQ-GISLSTLGRSTVLVSPDLPE 406
++LW + A N D ++A K + +F G SL T + ++ P++
Sbjct: 394 RLTLWGDEAIKA------NVDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISG 447
Query: 407 AKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFS 466
+L WY +E + + I G +++ R++ + + GD + S
Sbjct: 448 VSELYDWYTTEKPHSELKLISQTSGGMSE-APRTIAG--LQEMQFGKDSDKGD----YAS 500
Query: 467 IKAYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCD 524
+KA I+ I P+ A+ Y+ C + C KKV ++ G Y CE C K+ + Y+M + D
Sbjct: 501 VKAMITRINPNSAL-YKGCASEGCQKKVIESDGE-YRCEKCNKSMNKFKWLYMMQFELSD 558
Query: 525 GSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQE 584
+G+ +++ F + A +++G +A E+ +LK + + N Y + + +VP + R+ +
Sbjct: 559 ETGQVYVTAFGDSAAKVVGKTAQEVGDLKDE--NLNEYNATFERLQFVPKMWRLRCKMET 616
Query: 585 YNNEKRQRVTVRAVAPVD 602
YN E RQ++TV +V V+
Sbjct: 617 YNEEVRQKMTVFSVEEVN 634
>sp|B0BMX9|MEIOB_RAT Meiosis-specific with OB domain-containing protein OS=Rattus
norvegicus GN=Meiob PE=2 SV=1
Length = 470
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 91/437 (20%), Positives = 181/437 (41%), Gaps = 46/437 (10%)
Query: 166 ARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTY---KNARGEGCVFNVELTDEDGT 222
A+ + L L+P N I V K +++ + KN E F+ + D
Sbjct: 2 AKFFALKNFTALSDLHPNMANLKIIGIVIGKTDVKGFPDRKNIGSERYTFSFTIRDSPNH 61
Query: 223 QIQATMFN--EAARKFYDRFQLGKVYYISRGTLRVANKQFK-----TVQNDYEMNLNENS 275
+ + + + R D F++G+ I ++ + + ++Y++ L+EN
Sbjct: 62 FVNVSSWGSEDYIRSLSDNFKVGECVIIENPLIQRKETEREERFSPATPSNYKLLLSENH 121
Query: 276 ---------EVEEAVNETAFIP----QTKFNFVPIDELGRYVNGTELVDIIGVVQNVSP- 321
EV+ + +P + ++ I G ++G +++++ V++V
Sbjct: 122 SMVKVCSPYEVDTKLLSLIHLPVKESRDYYSLADIVANGHSLDG-RIINVLAAVRSVGEP 180
Query: 322 ---TMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIK 378
T S RRK + ++ + DET+ + T++ W+ + + Q + A ++ I A
Sbjct: 181 KYFTTSDRRKGQ-----RCEVKLFDETEPSFTMTCWDNESILLAQSWM--ARETVIFASD 233
Query: 379 -SLKVGDFQGISLST-LGRSTVLVSPDLPEAKKLKSWYESEGKGTSMAS-IGSGLG-SLA 434
+ FQ +T + ++ + V+PD PEA L ++ E K TS+A I S L S+
Sbjct: 234 VRINFNKFQNCMAATVISKTIITVNPDTPEANILLNFIR-ENKETSIADEIDSYLKESVN 292
Query: 435 KNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQ---AMWYRACKTCNKK 491
N ++Y+ V + + G P + + AYIS + D + C +C
Sbjct: 293 LNTIVNVYT--VEQLKGKALENEGKVDPFYGILYAYISTLNIDDETTKVVRNRCSSCGYI 350
Query: 492 VTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAW-ISIFNEEAERIIGCSADELN 550
V DA + C L + ++ + D +G S+ AE +GC+ +E
Sbjct: 351 VNDASNTCTICSKDSSRSRSFCLSFDVLVDLTDHTGTLRSCSLSGSVAEETLGCTINEFL 410
Query: 551 ELKSQLGDDNSYQMKLK 567
+ S+ +Q+ L+
Sbjct: 411 TMTSEQKTKLKWQLLLE 427
>sp|Q9D513|MEIOB_MOUSE Meiosis-specific with OB domain-containing protein OS=Mus musculus
GN=Meiob PE=2 SV=3
Length = 470
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 23/279 (8%)
Query: 301 GRYVNGTELVDIIGVVQNVSP----TMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNE 356
G ++G +++++ V++V T S RRK + ++ + DET+ + T++ W+
Sbjct: 160 GHSLDG-RIINVLAAVRSVGEPKYFTTSDRRKGQ-----RCEVKLFDETEPSFTMTCWDN 213
Query: 357 LATNVGQELLDNADKSPIVAIK-SLKVGDFQGISLST-LGRSTVLVSPDLPEAKKLKSWY 414
+ + Q + A ++ I A + FQ +T + ++ + V+PD PEA L + Y
Sbjct: 214 ESILLAQSWM--ARETVIFASDVRINFNKFQNCMAATVISKTIITVNPDTPEANILLN-Y 270
Query: 415 ESEGKGTSMAS-IGSGLG-SLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYIS 472
E K T++A I S L S+ N +Y+ V + + S G P + + AYIS
Sbjct: 271 IRENKETNVADEIDSYLKESVNLNTIVDVYT--VEQLKVKALKSEGKADPFYGILYAYIS 328
Query: 473 LIKPDQ---AMWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529
+ D + C +C V +A + C + L + ++ + D +G
Sbjct: 329 TLNIDDETTKVVRNRCSSCGYIVNEASNTCTICNQDSSRLKSFFLSFDVLVDLTDHTGTL 388
Query: 530 W-ISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLK 567
S+ AE +GC+ +E + S+ +Q+ L+
Sbjct: 389 HSCSLSGSIAEETLGCTINEFLTMTSEQKTKLKWQLLLE 427
>sp|Q9CI70|DPO3A_LACLA DNA polymerase III subunit alpha OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=dnaE PE=3 SV=1
Length = 1060
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 28/116 (24%)
Query: 135 GPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVT 194
G G+ P Q + R GN P A+L RR+ LV +N
Sbjct: 882 GIGVTPHPLQNLA--------RRFEGNFTPLAQLVKNRRMTILVEIN------------- 920
Query: 195 SKGNMRTYKNARGEGCVFNVELTDEDGTQ-IQATMFNEAARKFYDRFQLGKVYYIS 249
+RT++ G+ F LT D + T+F E R+F + GK Y IS
Sbjct: 921 ---YIRTHRTKTGQTMAF---LTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLIS 970
>sp|Q67W65|TAF1_ORYSJ Transcription initiation factor TFIID subunit 1 OS=Oryza sativa
subsp. japonica GN=TAF1 PE=2 SV=1
Length = 1810
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 338 DITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRST 397
++ A +R + ++ WN + V N DK I ++ VGD G LG S
Sbjct: 1002 ELAAAAHIERELQITSWNLTSNFVA---CTNQDKENIERLEITGVGDPSG---RGLGFSY 1055
Query: 398 VLVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSM 441
V V+P P + + KGT++ + L L+ + AR +
Sbjct: 1056 VRVTPKAPVSNSTHKKKSAAAKGTTVTGTDADLRRLSMDAAREL 1099
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,919,874
Number of Sequences: 539616
Number of extensions: 9495995
Number of successful extensions: 21776
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 21684
Number of HSP's gapped (non-prelim): 32
length of query: 623
length of database: 191,569,459
effective HSP length: 124
effective length of query: 499
effective length of database: 124,657,075
effective search space: 62203880425
effective search space used: 62203880425
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)