Query 006973
Match_columns 623
No_of_seqs 275 out of 953
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gop_C Putative uncharacterize 100.0 6.2E-94 2.1E-98 785.4 49.5 437 173-618 2-444 (444)
2 1jmc_A Protein (replication pr 100.0 3.4E-53 1.2E-57 428.5 30.4 239 172-419 6-244 (246)
3 1l1o_C Replication protein A 7 100.0 1.5E-43 5E-48 339.5 19.5 172 443-618 5-179 (181)
4 3u50_C Telomerase-associated p 100.0 6.5E-41 2.2E-45 313.9 12.7 157 444-605 7-172 (172)
5 1ynx_A Replication factor-A pr 100.0 2.9E-30 9.9E-35 228.7 13.4 110 173-283 3-112 (114)
6 2b29_A Replication protein A 7 99.9 1E-26 3.6E-31 206.9 10.2 98 1-105 4-108 (123)
7 3dm3_A Replication factor A; p 99.5 1.9E-13 6.5E-18 118.4 10.6 98 173-282 4-102 (105)
8 1o7i_A SSB, SSO2364, single st 99.5 5E-13 1.7E-17 118.8 13.3 108 174-302 2-109 (119)
9 3e0e_A Replication protein A; 99.4 9.6E-13 3.3E-17 112.5 10.0 93 175-280 3-96 (97)
10 2k50_A Replication factor A re 99.3 4.5E-12 1.5E-16 112.0 11.6 104 291-405 4-109 (115)
11 1o7i_A SSB, SSO2364, single st 99.3 4.8E-12 1.6E-16 112.5 10.7 102 294-409 2-106 (119)
12 3dm3_A Replication factor A; p 99.3 1.5E-11 5.2E-16 106.3 12.0 93 293-399 4-98 (105)
13 2k50_A Replication factor A re 99.2 6.9E-11 2.4E-15 104.3 11.5 102 173-283 6-108 (115)
14 2k75_A Uncharacterized protein 99.1 3.7E-10 1.3E-14 97.9 11.8 93 174-283 3-96 (106)
15 3e0e_A Replication protein A; 99.0 2.2E-09 7.7E-14 91.5 11.9 91 295-399 3-94 (97)
16 1wjj_A Hypothetical protein F2 98.9 8.1E-09 2.8E-13 93.8 12.6 98 173-282 15-122 (145)
17 2k75_A Uncharacterized protein 98.9 1.3E-08 4.3E-13 88.2 11.5 91 292-400 1-92 (106)
18 2kbn_A Conserved protein; nucl 98.7 1.2E-07 4.1E-12 82.5 12.0 94 173-283 4-97 (109)
19 4gop_C Putative uncharacterize 98.6 1.5E-06 5.3E-11 94.3 21.4 260 41-361 40-369 (444)
20 1jmc_A Protein (replication pr 98.6 7.3E-06 2.5E-10 81.7 24.6 177 293-541 7-192 (246)
21 1wjj_A Hypothetical protein F2 98.5 2.6E-07 8.8E-12 83.9 8.8 101 289-402 11-121 (145)
22 2kbn_A Conserved protein; nucl 98.5 9.1E-07 3.1E-11 76.9 10.8 89 294-402 5-95 (109)
23 1xjv_A Protection of telomeres 98.4 2.7E-05 9.1E-10 79.8 23.1 224 173-416 5-289 (294)
24 1miu_A BRCA2, breast cancer ty 98.3 5.8E-05 2E-09 84.4 23.2 181 211-415 512-708 (738)
25 1jb7_A Telomere-binding protei 98.2 8.8E-05 3E-09 80.8 22.0 343 172-551 36-453 (495)
26 1ynx_A Replication factor-A pr 98.2 2.2E-05 7.4E-10 68.7 12.8 101 293-403 3-111 (114)
27 1xjv_A Protection of telomeres 98.1 5.9E-05 2E-09 77.2 17.4 143 291-475 3-167 (294)
28 1qzg_A Protection of telomeres 97.9 5E-05 1.7E-09 71.4 9.8 90 292-388 27-120 (187)
29 3u58_A Tetrahymena TEB1 AB; te 97.6 0.0071 2.4E-07 52.9 18.8 162 174-363 11-176 (213)
30 1jb7_A Telomere-binding protei 97.4 0.0017 5.7E-08 70.8 14.2 88 289-388 33-133 (495)
31 3u4v_A Telomerase-associated p 97.3 0.0031 1.1E-07 50.3 11.4 89 174-273 15-105 (117)
32 1se8_A Single-strand binding p 95.4 1.1 3.7E-05 45.5 19.5 178 184-386 5-211 (301)
33 2fxq_A Single-strand binding p 95.2 1.2 4.2E-05 44.1 19.0 179 184-386 5-207 (264)
34 3mxn_A RECQ-mediated genome in 94.9 0.036 1.2E-06 50.2 6.0 103 461-603 36-145 (157)
35 3u4z_A Telomerase-associated p 94.2 1.2 4.1E-05 35.1 12.2 88 180-283 8-96 (109)
36 3kdf_D Replication protein A 3 93.7 0.25 8.5E-06 43.7 8.7 69 309-391 33-102 (132)
37 4hik_A Protection of telomeres 93.5 0.89 3.1E-05 40.7 12.0 61 348-412 66-135 (143)
38 4gop_B Putative uncharacterize 93.4 0.32 1.1E-05 43.3 8.9 69 309-391 38-107 (136)
39 3ebe_A Protein MCM10 homolog; 92.9 0.44 1.5E-05 45.3 9.5 81 171-256 35-125 (200)
40 4dni_A Fusion protein of RNA-e 92.4 8.9 0.0003 37.7 20.9 174 184-386 30-229 (257)
41 3kf6_A Protein STN1; OB fold, 90.3 3 0.0001 38.0 11.8 70 309-391 49-119 (159)
42 4gop_B Putative uncharacterize 90.1 0.72 2.5E-05 40.9 7.4 77 518-618 55-132 (136)
43 2pi2_A Replication protein A 3 90.0 0.68 2.3E-05 46.2 7.9 69 309-391 73-142 (270)
44 3rn5_A Interferon-inducible pr 88.9 15 0.00051 34.3 18.4 176 189-399 15-196 (208)
45 1txy_A Primosomal replication 88.8 0.92 3.1E-05 38.3 6.7 65 184-251 2-77 (104)
46 2vw9_A Single-stranded DNA bin 88.4 1.6 5.4E-05 38.7 8.2 65 184-251 2-78 (134)
47 3fhw_A Primosomal replication 87.6 3.9 0.00013 35.1 10.0 65 184-252 1-76 (115)
48 3eiv_A Single-stranded DNA-bin 87.1 3 0.0001 39.4 9.7 64 184-250 4-81 (199)
49 3en2_A Probable primosomal rep 86.9 3.4 0.00012 34.7 8.9 65 184-252 2-77 (101)
50 3vdy_A SSB, single-stranded DN 86.9 2 7E-05 36.8 7.9 66 183-251 4-79 (116)
51 3u58_A Tetrahymena TEB1 AB; te 86.5 4.9 0.00017 35.0 9.8 86 180-281 126-212 (213)
52 1qzg_A Protection of telomeres 86.5 0.9 3.1E-05 42.5 5.7 85 174-260 29-121 (187)
53 3k8a_A Putative primosomal rep 86.4 4.8 0.00016 33.8 9.7 63 185-252 8-81 (103)
54 3ebe_A Protein MCM10 homolog; 86.0 1 3.5E-05 42.8 5.8 83 292-384 36-124 (200)
55 1ffk_W Ribosomal protein L37AE 85.2 0.33 1.1E-05 38.2 1.6 34 483-516 28-62 (73)
56 1z9f_A Single-strand binding p 84.9 1.9 6.5E-05 39.1 6.9 71 181-255 13-95 (153)
57 3cc2_Z 50S ribosomal protein L 84.7 0.29 1E-05 41.8 1.2 28 483-510 61-89 (116)
58 3i7f_A Aspartyl-tRNA synthetas 84.3 5.9 0.0002 43.4 11.7 99 172-280 48-153 (548)
59 1v1q_A Primosomal replication 84.3 2.5 8.5E-05 37.4 7.2 64 185-251 20-94 (134)
60 1vq8_Z 50S ribosomal protein L 83.4 0.36 1.2E-05 39.0 1.2 27 484-510 29-56 (83)
61 3koj_A Uncharacterized protein 83.3 5.2 0.00018 33.9 8.5 69 183-254 10-84 (108)
62 3jyw_9 60S ribosomal protein L 83.2 0.49 1.7E-05 37.0 1.8 31 483-513 27-58 (72)
63 1eov_A ASPRS, aspartyl-tRNA sy 82.1 5.9 0.0002 42.8 10.6 98 173-280 22-130 (487)
64 1qvc_A Single stranded DNA bin 81.6 3.8 0.00013 36.7 7.5 65 184-251 5-82 (145)
65 3afp_A Single-stranded DNA-bin 81.5 4.1 0.00014 37.4 7.9 64 184-250 4-81 (168)
66 3tqy_A Single-stranded DNA-bin 81.2 3.2 0.00011 37.7 6.9 66 183-251 7-85 (158)
67 3j21_i 50S ribosomal protein L 79.4 0.48 1.7E-05 38.1 0.6 29 483-511 36-65 (83)
68 3ulp_A Single-strand binding p 78.5 5.1 0.00017 34.7 7.1 64 184-250 6-83 (124)
69 2pi2_A Replication protein A 3 78.4 4.9 0.00017 39.9 7.8 76 518-618 90-167 (270)
70 3j21_g 50S ribosomal protein L 78.2 0.82 2.8E-05 33.3 1.5 25 482-509 14-38 (51)
71 1eqq_A Single stranded DNA bin 77.5 2 6.7E-05 40.0 4.3 65 184-251 6-83 (178)
72 3iz5_m 60S ribosomal protein L 76.6 0.66 2.3E-05 38.0 0.7 28 484-511 38-66 (92)
73 4dam_A Single-stranded DNA-bin 76.6 3.8 0.00013 35.9 5.7 63 184-250 15-91 (128)
74 3m4p_A Ehasnrs, asparaginyl-tR 75.8 13 0.00045 39.7 10.8 99 173-281 18-123 (456)
75 3kdf_D Replication protein A 3 75.4 10 0.00034 33.2 8.2 66 39-107 47-114 (132)
76 3izc_m 60S ribosomal protein R 74.8 0.77 2.6E-05 37.6 0.6 28 484-511 38-66 (92)
77 4a17_Y RPL37A, 60S ribosomal p 74.6 0.69 2.3E-05 38.6 0.3 28 484-511 38-66 (103)
78 1pft_A TFIIB, PFTFIIBN; N-term 72.7 2.1 7E-05 30.8 2.4 28 483-510 6-35 (50)
79 1se8_A Single-strand binding p 72.1 6.6 0.00022 39.7 6.9 65 183-251 128-204 (301)
80 3lgj_A Single-stranded DNA-bin 72.0 6.5 0.00022 36.1 6.3 65 184-251 23-101 (169)
81 3ull_A DNA binding protein; DN 71.4 11 0.00036 33.1 7.3 65 183-250 13-96 (132)
82 2js4_A UPF0434 protein BB2007; 71.1 1.4 4.9E-05 34.3 1.3 28 482-509 8-36 (70)
83 2hf1_A Tetraacyldisaccharide-1 71.0 1.4 4.6E-05 34.2 1.2 30 480-509 6-36 (68)
84 4hik_A Protection of telomeres 70.4 4.7 0.00016 36.0 4.7 47 223-275 66-112 (143)
85 2pk7_A Uncharacterized protein 70.4 1.6 5.3E-05 34.0 1.4 28 482-509 8-36 (69)
86 2jne_A Hypothetical protein YF 70.4 1.7 5.7E-05 35.8 1.6 26 483-509 33-58 (101)
87 3k7u_C MP18 RNA editing comple 70.4 18 0.00063 32.3 8.7 67 183-255 5-85 (148)
88 2jr6_A UPF0434 protein NMA0874 69.9 1.5 5.1E-05 34.0 1.2 28 482-509 8-36 (68)
89 3pgz_A Single-stranded DNA-bin 69.2 8.1 0.00028 36.3 6.3 64 184-250 26-103 (193)
90 3koj_A Uncharacterized protein 67.8 46 0.0016 27.9 10.2 70 308-386 12-89 (108)
91 2kpi_A Uncharacterized protein 67.7 2.1 7E-05 31.8 1.5 27 482-509 10-38 (56)
92 3j20_Y 30S ribosomal protein S 67.4 2.6 8.9E-05 30.5 1.9 28 482-509 19-47 (50)
93 3nem_A Aspartyl-tRNA synthetas 66.9 25 0.00085 37.4 10.4 91 175-280 5-101 (438)
94 1x54_A Asparaginyl-tRNA synthe 66.2 22 0.00075 37.7 9.8 90 176-280 6-101 (434)
95 1wg2_A Zinc finger (AN1-like) 65.7 1.6 5.6E-05 33.2 0.6 23 483-509 16-38 (64)
96 3f2b_A DNA-directed DNA polyme 65.4 14 0.00047 43.6 8.5 73 173-250 6-80 (1041)
97 1c0a_A Aspartyl tRNA synthetas 65.2 29 0.00098 38.3 10.8 87 185-281 16-106 (585)
98 3rlo_A Gamma-interferon-induci 65.1 89 0.003 29.0 18.5 175 189-399 12-193 (204)
99 2jny_A Uncharacterized BCR; st 64.9 2.1 7.3E-05 33.0 1.2 28 482-509 10-38 (67)
100 1wyd_A Hypothetical aspartyl-t 63.9 19 0.00066 38.1 8.8 89 176-280 6-98 (429)
101 3bju_A Lysyl-tRNA synthetase; 63.6 24 0.00081 38.4 9.6 79 185-280 56-141 (521)
102 1wfp_A Zinc finger (AN1-like) 63.4 1.9 6.4E-05 33.8 0.6 29 483-516 26-54 (74)
103 2jrp_A Putative cytoplasmic pr 63.4 3 0.0001 33.4 1.7 10 484-493 20-29 (81)
104 2akl_A PHNA-like protein PA012 63.2 2.6 8.8E-05 36.6 1.4 28 482-509 27-54 (138)
105 3en2_A Probable primosomal rep 62.8 51 0.0017 27.3 9.4 69 310-388 5-85 (101)
106 3k81_C MP18 RNA editing comple 60.5 13 0.00045 33.8 5.8 70 180-255 18-101 (164)
107 1n9w_A Aspartyl-tRNA synthetas 60.2 29 0.00098 36.7 9.3 83 176-280 4-88 (422)
108 2xgt_A Asparaginyl-tRNA synthe 60.0 31 0.0011 36.6 9.6 93 176-279 2-96 (435)
109 3u6p_A Formamidopyrimidine-DNA 59.5 2.8 9.7E-05 41.8 1.2 25 483-507 246-273 (273)
110 1l0w_A Aspartyl-tRNA synthetas 58.7 36 0.0012 37.5 10.0 96 176-281 6-104 (580)
111 1ee8_A MUTM (FPG) protein; bet 58.1 3.5 0.00012 40.9 1.6 26 483-508 236-264 (266)
112 2xzf_A Formamidopyrimidine-DNA 57.0 3.3 0.00011 41.2 1.3 25 483-507 243-270 (271)
113 1k82_A Formamidopyrimidine-DNA 57.0 3.3 0.00011 41.1 1.2 25 483-507 241-268 (268)
114 2k4x_A 30S ribosomal protein S 56.9 4.9 0.00017 29.7 1.8 28 482-509 18-46 (55)
115 1k3x_A Endonuclease VIII; hydr 56.8 3.4 0.00011 40.9 1.2 24 484-507 236-262 (262)
116 1wfl_A Zinc finger protein 216 56.6 3.1 0.0001 32.6 0.7 23 483-509 26-48 (74)
117 2xvs_A Tetratricopeptide repea 56.2 22 0.00074 32.4 6.4 74 173-256 62-136 (166)
118 2fxq_A Single-strand binding p 55.9 23 0.00078 34.8 7.2 64 183-250 127-199 (264)
119 4ex5_A Lysine--tRNA ligase; st 54.1 39 0.0013 36.7 9.2 79 185-280 87-169 (529)
120 3vdy_A SSB, single-stranded DN 54.1 83 0.0028 26.4 9.6 35 348-386 51-86 (116)
121 1wfh_A Zinc finger (AN1-like) 53.7 4.6 0.00016 30.7 1.2 23 483-509 16-38 (64)
122 1wff_A Riken cDNA 2810002D23 p 53.5 3.8 0.00013 33.0 0.8 31 482-516 25-55 (85)
123 3tqy_A Single-stranded DNA-bin 53.5 77 0.0026 28.4 9.8 71 309-386 10-92 (158)
124 3fhw_A Primosomal replication 53.1 57 0.0019 27.7 8.3 60 310-379 4-74 (115)
125 1dl6_A Transcription factor II 53.1 7.7 0.00026 28.9 2.4 27 484-510 13-41 (58)
126 1twf_L ABC10-alpha, DNA-direct 52.8 5.3 0.00018 31.0 1.5 28 479-507 26-53 (70)
127 3eiv_A Single-stranded DNA-bin 51.7 76 0.0026 29.8 9.6 35 348-386 54-89 (199)
128 2vw9_A Single-stranded DNA bin 50.1 90 0.0031 27.1 9.4 35 348-386 50-85 (134)
129 1gm5_A RECG; helicase, replica 50.1 11 0.00036 43.4 4.1 73 173-255 155-229 (780)
130 3w0f_A Endonuclease 8-like 3; 49.7 6.9 0.00023 39.1 2.2 26 484-509 253-283 (287)
131 3au7_A TIAS, putative uncharac 48.9 44 0.0015 34.9 8.2 67 176-251 277-345 (402)
132 3h0g_L DNA-directed RNA polyme 47.1 8.6 0.00029 29.2 1.8 29 481-509 20-48 (63)
133 3a74_A Lysyl-tRNA synthetase; 46.8 65 0.0022 34.7 9.5 79 185-280 57-139 (493)
134 1e1o_A Lysyl-tRNA synthetase, 45.3 47 0.0016 35.9 8.1 79 185-280 65-148 (504)
135 3cng_A Nudix hydrolase; struct 44.2 27 0.00091 32.0 5.3 46 482-529 3-53 (189)
136 1txy_A Primosomal replication 44.1 71 0.0024 26.4 7.4 60 310-379 5-76 (104)
137 3k8a_A Putative primosomal rep 44.0 1.3E+02 0.0046 24.7 9.1 69 309-388 9-89 (103)
138 2hpi_A DNA polymerase III alph 42.3 15 0.0005 44.1 3.7 62 186-253 1044-1105(1220)
139 1v1q_A Primosomal replication 42.2 1.1E+02 0.0038 26.7 8.6 62 309-379 21-93 (134)
140 3u50_C Telomerase-associated p 42.2 18 0.00063 33.2 3.7 28 211-239 76-103 (172)
141 1l1o_C Replication protein A 7 41.8 22 0.00075 32.8 4.2 26 211-237 80-105 (181)
142 2hpi_A DNA polymerase III alph 41.0 24 0.00081 42.4 5.2 77 295-383 1027-1106(1220)
143 3ulp_A Single-strand binding p 40.7 1.7E+02 0.0057 24.8 10.2 36 348-387 55-92 (124)
144 4dni_A Fusion protein of RNA-e 40.4 58 0.002 31.9 7.1 61 184-250 146-221 (257)
145 3kf6_A Protein STN1; OB fold, 39.3 1E+02 0.0035 27.7 8.2 56 186-250 49-107 (159)
146 1ryq_A DNA-directed RNA polyme 38.6 22 0.00074 27.5 2.9 23 481-508 10-32 (69)
147 2con_A RUH-035 protein, NIN on 38.4 11 0.00038 30.0 1.3 42 481-530 14-55 (79)
148 1nui_A DNA primase/helicase; z 38.3 12 0.00042 36.4 2.0 26 481-508 13-42 (255)
149 3k1f_M Transcription initiatio 38.2 13 0.00046 34.0 2.0 29 482-510 21-53 (197)
150 2gmg_A Hypothetical protein PF 38.1 24 0.00082 29.5 3.3 38 481-519 66-103 (105)
151 3afp_A Single-stranded DNA-bin 38.1 1.8E+02 0.0063 26.2 9.8 35 348-386 54-89 (168)
152 3nbi_A RECQ-mediated genome in 37.9 28 0.00095 33.2 4.3 38 41-80 136-174 (216)
153 1z60_A TFIIH basal transcripti 37.4 12 0.0004 28.0 1.2 25 483-509 16-40 (59)
154 2lcq_A Putative toxin VAPC6; P 36.8 6.4 0.00022 35.8 -0.4 41 467-509 118-158 (165)
155 2vv6_A FIXL, sensor protein FI 36.5 35 0.0012 27.5 4.3 30 520-551 6-35 (119)
156 3p8b_A DNA-directed RNA polyme 35.2 25 0.00085 28.0 2.8 42 479-527 20-61 (81)
157 2i46_A Adrenocortical dysplasi 35.1 32 0.0011 29.9 3.8 19 41-59 52-70 (161)
158 3k7a_M Transcription initiatio 33.8 17 0.00059 37.2 2.3 28 483-510 22-53 (345)
159 2oq0_A Gamma-interferon-induci 33.7 3E+02 0.01 25.6 19.6 176 189-399 18-200 (206)
160 1z9f_A Single-strand binding p 33.5 69 0.0024 28.6 6.0 35 348-386 64-99 (153)
161 4dam_A Single-stranded DNA-bin 33.3 61 0.0021 28.0 5.4 34 348-385 64-98 (128)
162 1vd4_A Transcription initiatio 30.6 23 0.00079 25.8 2.0 27 484-510 16-50 (62)
163 3pgz_A Single-stranded DNA-bin 30.3 2E+02 0.0069 26.6 8.8 35 348-386 75-111 (193)
164 4esj_A Type-2 restriction enzy 30.1 11 0.00039 36.1 0.1 28 482-509 34-66 (257)
165 3lgj_A Single-stranded DNA-bin 30.0 2.8E+02 0.0094 25.0 9.6 35 348-386 72-108 (169)
166 1d06_A Nitrogen fixation regul 29.7 51 0.0017 27.0 4.3 30 520-551 29-58 (130)
167 4gs3_A Single-stranded DNA-bin 28.1 71 0.0024 26.8 4.7 66 184-255 11-80 (107)
168 3qt1_I DNA-directed RNA polyme 27.0 25 0.00085 30.8 1.8 27 483-509 25-56 (133)
169 2lv2_A Insulinoma-associated p 26.9 29 0.00098 27.6 2.0 27 484-510 30-67 (85)
170 3na7_A HP0958; flagellar bioge 26.5 23 0.00077 34.7 1.6 26 483-508 199-231 (256)
171 2cr8_A MDM4 protein; ZF-ranbp 26.5 21 0.00071 25.6 0.9 23 482-507 11-33 (53)
172 1x4w_A Hypothetical protein FL 26.5 9.2 0.00031 29.4 -1.0 24 483-509 16-41 (67)
173 2kdx_A HYPA, hydrogenase/ureas 26.4 25 0.00086 30.0 1.7 26 482-508 73-99 (119)
174 1eqq_A Single stranded DNA bin 26.1 2E+02 0.0068 26.2 7.9 35 348-386 55-90 (178)
175 2k5r_A Uncharacterized protein 25.9 17 0.00059 30.0 0.5 12 482-493 8-19 (97)
176 4gzn_C ZFP-57, zinc finger pro 25.7 27 0.00092 25.7 1.5 27 484-510 6-43 (60)
177 1qvc_A Single stranded DNA bin 25.2 2.5E+02 0.0087 24.5 8.2 35 348-386 54-89 (145)
178 1p91_A Ribosomal RNA large sub 24.9 27 0.00094 33.6 1.9 23 483-506 3-25 (269)
179 3mfx_A Sensory BOX/ggdef famil 24.9 61 0.0021 27.4 3.9 30 520-551 20-49 (129)
180 2i5o_A DNA polymerase ETA; zin 24.6 24 0.0008 24.0 0.9 14 497-510 7-20 (39)
181 4gs3_A Single-stranded DNA-bin 24.4 3.1E+02 0.01 22.8 8.4 62 309-379 13-76 (107)
182 1bbo_A Human enhancer-binding 24.1 37 0.0013 23.5 2.0 27 484-510 3-40 (57)
183 3a43_A HYPD, hydrogenase nicke 23.4 61 0.0021 28.5 3.6 41 482-523 70-134 (139)
184 1ll8_A PAS kinase; PAS domain, 23.0 37 0.0012 27.1 2.0 29 521-551 12-41 (114)
185 3twl_A Formamidopyrimidine-DNA 22.7 27 0.00093 35.2 1.3 26 483-508 248-278 (310)
186 1qyp_A RNA polymerase II; tran 22.6 39 0.0013 24.7 1.8 27 482-508 15-52 (57)
187 3k7u_C MP18 RNA editing comple 22.5 4E+02 0.014 23.4 9.8 36 348-387 53-90 (148)
188 2jne_A Hypothetical protein YF 22.2 35 0.0012 28.1 1.6 27 483-509 62-91 (101)
189 2adr_A ADR1; transcription reg 22.0 41 0.0014 23.6 1.9 27 484-510 4-41 (60)
190 2riq_A Poly [ADP-ribose] polym 21.6 36 0.0012 30.8 1.8 31 481-512 77-114 (160)
191 3a0s_A Sensor protein; PAS-fol 21.3 90 0.0031 22.6 4.0 30 520-551 5-34 (96)
192 2lce_A B-cell lymphoma 6 prote 21.2 42 0.0014 24.9 1.9 28 483-510 18-56 (74)
193 3h0g_I DNA-directed RNA polyme 21.2 40 0.0014 28.5 1.9 26 484-509 6-36 (113)
194 4ah6_A Aspartate--tRNA ligase, 21.0 3.4E+02 0.012 29.9 9.8 93 176-281 14-114 (617)
195 3uk3_C Zinc finger protein 217 20.5 39 0.0013 23.4 1.5 27 484-510 6-43 (57)
196 3b33_A Sensor protein; structu 20.5 82 0.0028 24.7 3.7 30 520-551 20-49 (115)
197 3vk8_A Probable formamidopyrim 20.5 38 0.0013 33.9 1.9 25 483-508 256-288 (295)
198 4bbr_M Transcription initiatio 20.5 35 0.0012 35.0 1.6 28 482-509 21-52 (345)
199 1x6e_A Zinc finger protein 24; 20.4 45 0.0015 24.6 1.9 27 484-510 16-53 (72)
200 1vib_A Neurotoxin B-IV; hydrox 20.1 8.1 0.00028 27.0 -2.1 21 481-508 8-29 (55)
201 2e72_A POGO transposable eleme 20.0 40 0.0014 23.9 1.3 13 497-509 10-22 (49)
No 1
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=6.2e-94 Score=785.45 Aligned_cols=437 Identities=35% Similarity=0.664 Sum_probs=400.0
Q ss_pred CeeeccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeE
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~ 252 (623)
+++||++|+|++++|+|+|||++||++|+|.+++|+|++|+|+|+|++| +|+|++|++++++|++.|+||+||+|++|+
T Consensus 2 ~~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 80 (444)
T 4gop_C 2 PIYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLLQENHVYLISKAR 80 (444)
T ss_dssp -CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEETHHHHHHTTTCCTTCEEEEESCE
T ss_pred CceeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC-EEEEEEeHHHHHHHHHheecCCEEEEcCCE
Confidence 4799999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred EEecCCCccccCCceEEEEccCcEEEEccCcCCCCCCCccccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCc
Q 006973 253 LRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNE 332 (623)
Q Consensus 253 V~~a~~~~~~~~~~yei~f~~~T~I~~~~d~~~~iP~~~~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~ 332 (623)
|++++++|++++|+|+|.|+.+|+|+++++. ..+|.+.|+|++|++|.+ .+.+.+|||||+|++|+++.+|++|++|+
T Consensus 81 V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~-~~iP~~~~~f~~i~~i~~-~~~~~~vDViG~V~~v~~~~~i~~k~~g~ 158 (444)
T 4gop_C 81 VNIAKKQFSNLQNEYEITFENSTEIEECTDA-TDVPEVKYEFVRINELES-VEANQQCDVIGILDSYGELSEIVSKASQR 158 (444)
T ss_dssp EEECCGGGCSCCCSEEEEECTTCEEEECSCC-SSSCCCCCCBCCGGGGGG-SCSSCCCBEEEEEEEECCCEEECCTTTCS
T ss_pred EEecCCccccCCCCEEEEEcCCcEEEEccCc-ccCcceeecccCHHHHhc-cCCCCceEEEEEEEEcCCcEEEEEccCCc
Confidence 9999999999999999999999999999876 579999999999999997 56788999999999999999999887788
Q ss_pred eeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeeccceeeecccceEEEEcCChHHHHHHHH
Q 006973 333 MVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLKS 412 (623)
Q Consensus 333 ~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G~~Ls~~~~S~i~iNPd~pe~~~l~~ 412 (623)
+..+|+|+|.|+||.+|+|||||++|..|... ...+.++||+|+++||++|+|++||+.++|+|++|||+||+++|++
T Consensus 159 ~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~--~~~~~~~VV~i~~~kV~~f~G~~ls~~~~s~i~inPdipea~~l~~ 236 (444)
T 4gop_C 159 PVQKRELTLVDQGNRSVKLTLWGKTAETFPTN--AGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRG 236 (444)
T ss_dssp CEEEEEEEEECTTCBEEEEEEEHHHHHTSTTS--TTSSSCCEEEEESCEEECTTSSEEECCTTCEEEESCSSHHHHHHHH
T ss_pred eeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhh--hccCCCCEEEEEeEEEeecCCeEEeccccceEEECCCCHHHHHHHH
Confidence 89999999999999999999999999998632 1246789999999999999999999999999999999999999999
Q ss_pred HHHhCCCccceeeecCCcC---ccccCCcccccccceehhccccCCCCCC-CCCeEEEEEEEEEEEeCCCCeEeccccc-
Q 006973 413 WYESEGKGTSMASIGSGLG---SLAKNGARSMYSDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRACKT- 487 (623)
Q Consensus 413 w~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ti~~i~~~~~~~~-~~~~~~~v~a~I~~i~~d~~~~Y~aC~~- 487 (623)
||+..|....+.+++...+ ..+.++......+++||+||++ .++|. ++++||+|+|+|+.|+.+ +|||+|||.
T Consensus 237 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~-~~~g~~~~~~~~~v~atI~~i~~~-~~~Y~aC~~~ 314 (444)
T 4gop_C 237 WYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKD-ENLGMSEKPDYFNVRATVVYIKQE-NLYYTACASE 314 (444)
T ss_dssp HHHHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHH-TTTTSSSSCEEEEEEEEEEEECCT-TCEEEECCST
T ss_pred HHHcCCCCcccccccccccccccccccccccccccceeHHHHhh-hccCCCCCCcEEEEEEEEEEEcCC-ceEEccCCcc
Confidence 9999998877777765421 0011111123467899999998 56664 789999999999999987 799999998
Q ss_pred -cccceecCCCCeeecCcCCCCccccceeEEEEEEEEeCCCcEEEEEehHhHHHHhCCCHHHHHHHHhhcCCchhHHHHH
Q 006973 488 -CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKL 566 (623)
Q Consensus 488 -C~KKv~~~~~~~~~C~kC~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~~~~~~~~~~~~~~~l 566 (623)
|+|||.+..+|.|+|++|++.+++|.|||+|++.|+|+||++|+++||+.|++|||++|+||.+++++ ++..|++++
T Consensus 315 ~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~~~--d~~~~~~~~ 392 (444)
T 4gop_C 315 GCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREE--SESEFSAAL 392 (444)
T ss_dssp TCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHHTT--CHHHHHHHH
T ss_pred cCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHHhc--ChHHHHHHH
Confidence 99999887678999999999999999999999999999999999999999999999999999999864 467899999
Q ss_pred HHhcCceEEEEEEEEeeecCceeeeEEEEEEeeccCHHHHHHHHHHHHHhhh
Q 006973 567 KEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISKKV 618 (623)
Q Consensus 567 ~~~~~~~~~f~v~~k~~~y~~~~r~~~~v~~~~~vd~~~e~~~Ll~~i~~~~ 618 (623)
+++.|++|+||+++++++|||+.|+||+|.+++|+||++|+++||++|++||
T Consensus 393 ~~~~~k~~~f~~~~k~~~y~~~~r~~~~v~~~~~~d~~~~~~~l~~~i~~~~ 444 (444)
T 4gop_C 393 HRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAKAGMELVDAIRAYM 444 (444)
T ss_dssp HTTSSCEEEEEEEEEEEEETTEEEEEEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_pred HHhhCcEEEEEEEEEeeeeCCeeEEEEEEEEeeeCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999985
No 2
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=100.00 E-value=3.4e-53 Score=428.47 Aligned_cols=239 Identities=45% Similarity=0.805 Sum_probs=227.3
Q ss_pred cCeeeccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 172 RRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 172 ~~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
..++||++|+|++++|+|+|||++||++|+|.+++++|++|+|+|+|++| +|+|++|++.+++|++.|++|+||+|++|
T Consensus 6 ~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~~ 84 (246)
T 1jmc_A 6 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSKG 84 (246)
T ss_dssp -CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEECC
T ss_pred cceEEHHHCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC-eEEEEEChHHHHHhhhhcccCCEEEECCC
Confidence 35899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred EEEecCCCccccCCceEEEEccCcEEEEccCcCCCCCCCccccccccccccccCCcceeEEEEEEEEeCCceEEEEccCC
Q 006973 252 TLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNN 331 (623)
Q Consensus 252 ~V~~a~~~~~~~~~~yei~f~~~T~I~~~~d~~~~iP~~~~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g 331 (623)
.|++++++|++++|+|||.|+.+|+|++|++. .++|.+.|+|++|++|.+ .+.+.+|||||+|++|+++.++++|++|
T Consensus 85 ~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~-~~iP~~~~~f~~i~~i~~-~~~~~~vDViG~V~~v~~~~~~~~k~~g 162 (246)
T 1jmc_A 85 TLKIANKQFTAVKNDYEMTFNNETSVMPCEDD-HHLPTVQFDFTGIDDLEN-KSKDSLVDIIGICKSYEDATKITVRSNN 162 (246)
T ss_dssp EEEECCGGGCCCCCSEEEECCTTCEEEECCSC-SCCCCCCCCBCCGGGGGG-SCTTCEEEEEEEEEEECCCEEEEETTTT
T ss_pred EEEEcccCcccCCCCEEEEEcCCcEEEEccCc-ccCCcceeeeEEHHHHhc-ccCCCceeEEEEEEEecCeEEEEEecCC
Confidence 99999999999999999999999999999876 579999999999999987 5678899999999999999999998779
Q ss_pred ceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeeccceeeecccceEEEEcCChHHHHHHH
Q 006973 332 EMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVSPDLPEAKKLK 411 (623)
Q Consensus 332 ~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G~~Ls~~~~S~i~iNPd~pe~~~l~ 411 (623)
++..+|++.|.|+||.+|+|||||++|..|. ...++||+|+++||++|+|++|++.++|+|++|||+||+++|+
T Consensus 163 ~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~------~~~~~vv~i~~~~v~~f~g~~ls~~~~s~i~inpd~pe~~~l~ 236 (246)
T 1jmc_A 163 REVAKRNIYLMDTSGKVVTATLWGEDADKFD------GSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLR 236 (246)
T ss_dssp EEEEEEEEEEECTTCCEEEEEEEHHHHHHCC------CTTCCEEEEEEEEEECTTSSEEECCSSCEEESSCCSHHHHHHH
T ss_pred CccEEEEEEEECCCCCEEEEEEEchhhhhcc------cCCCCEEEEEEEEEEecCCeEEEecCcceEEECCCCHHHHHHH
Confidence 9999999999999999999999999999874 3568999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 006973 412 SWYESEGK 419 (623)
Q Consensus 412 ~w~~~~g~ 419 (623)
+||+++|.
T Consensus 237 ~w~~~~g~ 244 (246)
T 1jmc_A 237 GWFDAEGQ 244 (246)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 99999885
No 3
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=100.00 E-value=1.5e-43 Score=339.51 Aligned_cols=172 Identities=31% Similarity=0.575 Sum_probs=157.3
Q ss_pred ccceehhccccCCCCCC-CCCeEEEEEEEEEEEeCCCCeEeccccc--cccceecCCCCeeecCcCCCCccccceeEEEE
Q 006973 443 SDRVSLTHITSNPSLGD-EKPVFFSIKAYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMV 519 (623)
Q Consensus 443 ~~~~ti~~i~~~~~~~~-~~~~~~~v~a~I~~i~~d~~~~Y~aC~~--C~KKv~~~~~~~~~C~kC~~~~~~~~~ry~l~ 519 (623)
.+++||+||++ .++|. ++|+||+|+|+|++|+.+ +|||+|||. |+|||.+.++|.|+|++|++.+++|.|||+|+
T Consensus 5 ~~~kti~qi~~-~~lg~~~k~~~f~v~atI~~i~~d-~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~ 82 (181)
T 1l1o_C 5 TNWKTLYEVKS-ENLGQGDKPDYFSSVATVVYLRKE-NCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILS 82 (181)
T ss_dssp CCBCCHHHHHH-HTTTSSSSCEEEEEEEEEEEECCS-TTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEE
T ss_pred cceEEHHHHhh-hccCCCCCCcEEEEEEEEEEEeCC-CEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEE
Confidence 57899999999 56764 899999999999999998 688999999 99999987688999999999999999999999
Q ss_pred EEEEeCCCcEEEEEehHhHHHHhCCCHHHHHHHHhhcCCchhHHHHHHHhcCceEEEEEEEEeeecCceeeeEEEEEEee
Q 006973 520 ARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVA 599 (623)
Q Consensus 520 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~~~~~~~~~~~~~~~l~~~~~~~~~f~v~~k~~~y~~~~r~~~~v~~~~ 599 (623)
+.|+|+||++|+++||+.|++|||+||+||.++.++ ++..|+.+|+++.|++|.|+++++.++|||+.|+||+|+++.
T Consensus 83 ~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~--~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~~~~v~~~~ 160 (181)
T 1l1o_C 83 VNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVK 160 (181)
T ss_dssp EEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTS--CHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhh--ChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEEEEEEEEee
Confidence 999999999999999999999999999999999864 367899999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhhh
Q 006973 600 PVDFAAESKFLLEEISKKV 618 (623)
Q Consensus 600 ~vd~~~e~~~Ll~~i~~~~ 618 (623)
|+||++|+++|+++|++|.
T Consensus 161 ~vd~~~e~~~L~~~i~~~~ 179 (181)
T 1l1o_C 161 PVDYREYGRRLVMSIRRSA 179 (181)
T ss_dssp ECCHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999875
No 4
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=100.00 E-value=6.5e-41 Score=313.86 Aligned_cols=157 Identities=17% Similarity=0.387 Sum_probs=135.8
Q ss_pred cceehhccccCCCCCCCCCeEEEEEEEEEEEeCCCCeEeccccccccceecCCCCeeecCcCCCCccccceeEEEEEEEE
Q 006973 444 DRVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQAMWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVC 523 (623)
Q Consensus 444 ~~~ti~~i~~~~~~~~~~~~~~~v~a~I~~i~~d~~~~Y~aC~~C~KKv~~~~~~~~~C~kC~~~~~~~~~ry~l~~~i~ 523 (623)
-++||+++++ ++||.... || |+|+|+.|+.+.+|||+|||.|+|||++..+|.|+|++|++. ++|.|||+|++.|+
T Consensus 7 i~~~i~~~~~-e~lG~~~~-~f-v~atI~~Ik~d~~~~Y~ACp~CnKKV~~~~~g~~~CekC~~~-~~~~~RYil~~~i~ 82 (172)
T 3u50_C 7 IEEIIQQAQA-SEIGQKKE-FY-VYGNLVSIQMKNKLYYYRCTCQGKSVLKYHGDSFFCESCQQF-INPQVHLMLRAFVQ 82 (172)
T ss_dssp HHHHHHHHHT-CCTTCEEE-EE-EEEEEECCCCSSCCEEEECTTSCCCEEEETTTEEEETTTTEE-CCCEEEECEEEEEE
T ss_pred HHHHHHHHHH-hhCCCCCC-EE-EEEEEEEEcCCCcEEehhchhhCCEeeeCCCCeEECCCCCCC-CCceEEEEEEEEEE
Confidence 3688999999 67886333 89 999999999987899999999999999666899999999999 99999999999999
Q ss_pred eCCCcEEEEEehHhHHHHhCC-C-------HHHH-HHHHhhcCCchhHHHHHHHhcCceEEEEEEEEeeecCceeeeEEE
Q 006973 524 DGSGEAWISIFNEEAERIIGC-S-------ADEL-NELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVT 594 (623)
Q Consensus 524 D~Tg~~~~~~F~~~ae~llG~-s-------A~el-~~~~~~~~~~~~~~~~l~~~~~~~~~f~v~~k~~~y~~~~r~~~~ 594 (623)
|+||++|+++||+.|++|||+ + |+|| .+|+++ +++..|+.+++++.|++|.|+||+|+|+||||.|+||+
T Consensus 83 D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~e~-~~~~~~~~~~~~~~~k~~~frlr~k~e~ynde~Rvr~t 161 (172)
T 3u50_C 83 DSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIEN-GQEEIIRQLFSKLDFARFIFEIQFENKEFNNEQEIAYK 161 (172)
T ss_dssp ETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHHTT-TCHHHHHHHHHTTTTCEEEEEEEEEECC------EEEE
T ss_pred eCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHHhc-CcHHHHHHHHHhhcCcEEEEEEEEEEcccCCEeEEEEE
Confidence 999999999999999999999 9 9999 888864 34678999999999999999999999999999999999
Q ss_pred EEEeeccCHHH
Q 006973 595 VRAVAPVDFAA 605 (623)
Q Consensus 595 v~~~~~vd~~~ 605 (623)
|+++.|+||++
T Consensus 162 v~~~~p~~~~~ 172 (172)
T 3u50_C 162 VLKIEKENIKE 172 (172)
T ss_dssp EEEEEEC----
T ss_pred EEEeeecCcCC
Confidence 99999999964
No 5
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-30 Score=228.70 Aligned_cols=110 Identities=44% Similarity=0.804 Sum_probs=107.5
Q ss_pred CeeeccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeE
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~ 252 (623)
.++||++|+|++++|+|+|||++||++|+|++++|+|++|+|+|+|++| +|+|++|++++++|+++|+||+||+|++|.
T Consensus 3 ~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 81 (114)
T 1ynx_A 3 PIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKAK 81 (114)
T ss_dssp CBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEESCE
T ss_pred ceEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEECCcE
Confidence 5899999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred EEecCCCccccCCceEEEEccCcEEEEccCc
Q 006973 253 LRVANKQFKTVQNDYEMNLNENSEVEEAVNE 283 (623)
Q Consensus 253 V~~a~~~~~~~~~~yei~f~~~T~I~~~~d~ 283 (623)
|++++++|++++|+|||.|+.+|+|++|.|+
T Consensus 82 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 82 LQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp EEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred EEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 9999999999999999999999999999875
No 6
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=99.93 E-value=1e-26 Score=206.88 Aligned_cols=98 Identities=21% Similarity=0.355 Sum_probs=88.3
Q ss_pred CCCCCCHHHHHHHhc-CCCCCCCCCCCcceEEEeeeeecC-----ceEEEEEeCcccceee-ccccccccccccCcccee
Q 006973 1 MDKTVSPDAISTILS-NPSPDSSSDIPEIVVQVLDLKLTG-----NRYMFNASDGKKRLKA-ILPSNLSSEVISGNIQNK 73 (623)
Q Consensus 1 m~~~lt~ga~~~i~~-~~~~~~~~~~~~pvlQvl~~k~~~-----~ryr~~lSDG~~~~~~-mlat~ln~~v~~~~l~~~ 73 (623)
|+..||+|||++|++ +. ..++|||||+++|+++ +|||++||||.|++++ ||+||||++|++|+|++|
T Consensus 4 M~~~LT~Gai~~I~~~~~------~~~~PvlQVl~~K~i~~~~~~~RyRl~lSDG~~~~~~~mLatqln~~v~~g~l~~~ 77 (123)
T 2b29_A 4 MVGQLSEGAIAAIMQKGD------TNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSN 77 (123)
T ss_dssp --CCCCTTHHHHHHHHCC------CSCCCEEEEEEEEEECCTTSCCEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTT
T ss_pred hhhcCCHhHHHHHHhcCC------CCCCceEEEEeeeecCCCCCCceEEEEEECcchheeeehhHHHHHHHHhcCCccCC
Confidence 788999999999998 33 3577999999999994 7999999999999998 999999999999999999
Q ss_pred eEEEEcceeeeccCCCceEEEEEEeeeeeccc
Q 006973 74 GLIRLLDYALNEIPTKSEKYLIVTKCEVVSPA 105 (623)
Q Consensus 74 siirl~~y~~~~~~~~~~~vlii~~lev~~~~ 105 (623)
|||||++|+++.++++ |+++||+++||+.++
T Consensus 78 sIirl~~y~~~~v~~~-k~vliIl~levl~~~ 108 (123)
T 2b29_A 78 CVCQIHRFIVNTLKDG-RRVVILMELEVLKSA 108 (123)
T ss_dssp CEEEEEEEEEEECSSS-CEEEEEEEEEEEECS
T ss_pred CEEEEEEEEEEEecCC-cEEEEEEeeEEeecc
Confidence 9999999999999832 799999999999874
No 7
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.47 E-value=1.9e-13 Score=118.37 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=88.0
Q ss_pred CeeeccccCCCCCCeEEEEEEEeeccccccccCCC-cccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARG-EGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g-~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
.++||++|.|+ .+|+|.|||+.++++|+|.+.+| +|+++++.|.|++| .|++|+|++.++. .|++|++|.| ++
T Consensus 4 ~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG-~IrvtlW~~~a~~---~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 4 DTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG-SIRVTLWDNLTDI---DVGRGDYVRV-RG 77 (105)
T ss_dssp CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE-EEEEEEEGGGGGS---CCCTTCEEEE-EE
T ss_pred cceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-cEEEEEECccccc---ccCCCCEEEE-EE
Confidence 57999999999 79999999999999999987666 58999999999999 8999999998887 7999999999 99
Q ss_pred EEEecCCCccccCCceEEEEccCcEEEEccC
Q 006973 252 TLRVANKQFKTVQNDYEMNLNENSEVEEAVN 282 (623)
Q Consensus 252 ~V~~a~~~~~~~~~~yei~f~~~T~I~~~~d 282 (623)
.|+... .+.++|++...|.|++++.
T Consensus 78 ~vk~~~------~g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 78 YIREGY------YGGLECTANYVEILKKGEK 102 (105)
T ss_dssp EEEECT------TSSEEEEEEEEEEEECCC-
T ss_pred EEEEcc------CCCEEEEeCCceEEEeccc
Confidence 998874 2579999999999998864
No 8
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.46 E-value=5e-13 Score=118.82 Aligned_cols=108 Identities=18% Similarity=0.275 Sum_probs=94.2
Q ss_pred eeeccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeEE
Q 006973 174 VHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTL 253 (623)
Q Consensus 174 ~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V 253 (623)
+++|++|.|+.+.|.+.++|..++++|+|...+|++++++++|.|++| +|++++|++.++ .|++|++|.|.++.|
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG-~I~~tlW~~~~~----~~~~G~vv~i~~g~v 76 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG-RVKLTLWGKHAG----SIKEGQVVKIENAWT 76 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE-EEEEEEEGGGTT----CCCTTCEEEEEEEEE
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC-EEEEEEECChhh----cCCCCCEEEEEeEEE
Confidence 568999999988999999999999999987777767899999999999 799999999874 489999999999999
Q ss_pred EecCCCccccCCceEEEEccCcEEEEccCcCCCCCCCcccccccccccc
Q 006973 254 RVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDELGR 302 (623)
Q Consensus 254 ~~a~~~~~~~~~~yei~f~~~T~I~~~~d~~~~iP~~~~~f~~i~di~~ 302 (623)
... .+.++|.+...+.|+++++ ++|..+++|.+
T Consensus 77 ~~~-------~g~~qL~i~~~~~i~~~~~---------~~~~~~~~l~~ 109 (119)
T 1o7i_A 77 TAF-------KGQVQLNAGSKTKIAEASE---------DGFPESSQIPE 109 (119)
T ss_dssp EEE-------TTEEEEEECTTCEEEECCC---------TTCCCGGGSCC
T ss_pred EEe-------CCEEEEEECCCEEEEEcCC---------cCCCcHHHhhh
Confidence 775 3569999999999999754 45677888876
No 9
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.40 E-value=9.6e-13 Score=112.47 Aligned_cols=93 Identities=20% Similarity=0.332 Sum_probs=79.6
Q ss_pred eeccccCCCCCCeEEEEEEEeeccccccccCCC-cccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeEE
Q 006973 175 HPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARG-EGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTL 253 (623)
Q Consensus 175 ~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g-~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V 253 (623)
.||++|.|+ .+|+|.|||+.+.++|+|.+..| +++++++.|.|++| .|++++|++.++. .|++|++|.| ++.|
T Consensus 3 ~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG-~I~~tlW~~~~~~---~i~~Gdvv~i-~g~v 76 (97)
T 3e0e_A 3 YKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG-SIRGTLWNELADF---EVKKGDIAEV-SGYV 76 (97)
T ss_dssp ECGGGCCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE-EEEEEEEGGGGGC---CCCTTCEEEE-EEEE
T ss_pred eEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-cEEEEEECCcccc---ccCCCCEEEE-EEEE
Confidence 589999999 79999999999999999987555 58899999999999 9999999998876 6999999999 8888
Q ss_pred EecCCCccccCCceEEEEccCcEEEEc
Q 006973 254 RVANKQFKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 254 ~~a~~~~~~~~~~yei~f~~~T~I~~~ 280 (623)
+... ..++|.+..++.|+++
T Consensus 77 ~~~~-------~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 77 KQGY-------SGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEC---------CEEEEEEEEEEEECC
T ss_pred EEcC-------CeEEEEECCCcEEEEC
Confidence 6552 3789999999999864
No 10
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.35 E-value=4.5e-12 Score=111.96 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=89.6
Q ss_pred ccccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCC
Q 006973 291 KFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNAD 370 (623)
Q Consensus 291 ~~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~ 370 (623)
.|+|++|++|.. +..+|++|+|++++++.++++|+ |++..+++++|.|+|| +|++|+|++.+..+. .+.
T Consensus 4 ~~~~~~I~~L~~----g~~v~i~~~V~~~~~~~~~~~k~-G~~~~~~~~~l~D~TG-~I~~t~w~~~~~~~~-----~l~ 72 (115)
T 2k50_A 4 EHRMDTISKLEE----GAETPVTGRVMKISSPRTFTTRK-GREGKLANVIIADDTG-ELRAVFWTENIKLLK-----KFR 72 (115)
T ss_dssp TTCCCCTTTCCT----TCEEEEEEEEEEECCCEECCCTT-SSCCEEEEEEEEETTE-EEEEEEETTGGGGGG-----TCC
T ss_pred ccceEEHHHCCC----CCEeEEEEEEEECCCceEEEcCC-CCEEEEEEEEEEeCCC-eEEEEEeCchhhhhh-----cCC
Confidence 578899999874 46789999999999998887774 7667899999999999 999999999887542 357
Q ss_pred CCcEEEEEeEEeee-ccc-eeeecccceEEEEcCChH
Q 006973 371 KSPIVAIKSLKVGD-FQG-ISLSTLGRSTVLVSPDLP 405 (623)
Q Consensus 371 ~~~Vv~i~~~kV~~-f~G-~~Ls~~~~S~i~iNPd~p 405 (623)
.|++|.|++++|++ |+| .+|+....|.+..+||++
T Consensus 73 ~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~~~ 109 (115)
T 2k50_A 73 EGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDPLE 109 (115)
T ss_dssp TTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESSCC
T ss_pred CCCEEEEEeeEEccccCCeEEEEECCCceEEECCccc
Confidence 79999999999987 988 589999999999999875
No 11
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.33 E-value=4.8e-12 Score=112.46 Aligned_cols=102 Identities=23% Similarity=0.351 Sum_probs=85.5
Q ss_pred cccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCCc
Q 006973 294 FVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSP 373 (623)
Q Consensus 294 f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~ 373 (623)
|++|+||.. ....+|++|+|++++++..+.+| +|+ ..+++++|.|+|| +|++|||++.|.. +..|+
T Consensus 2 f~~I~dL~~---~~~~v~~~~~V~~~~~~~~~~~k-~G~-~~~~~~~l~D~TG-~I~~tlW~~~~~~--------~~~G~ 67 (119)
T 1o7i_A 2 EEKVGNLKP---NMESVNVTVRVLEASEARQIQTK-NGV-RTISEAIVGDETG-RVKLTLWGKHAGS--------IKEGQ 67 (119)
T ss_dssp BCCGGGCCT---TCSSEEEEEEEEEECCCEEECCT-TCC-EEEEEEEEEETTE-EEEEEEEGGGTTC--------CCTTC
T ss_pred cEEHHHCcC---CCCcEEEEEEEEECCCCeeEEec-CCC-EEEEEEEEEeCCC-EEEEEEECChhhc--------CCCCC
Confidence 678899875 23479999999999999888777 476 7899999999999 6999999999854 35699
Q ss_pred EEEEEeEEeeeccc-eeeecccceEEEEcCC--hHHHHH
Q 006973 374 IVAIKSLKVGDFQG-ISLSTLGRSTVLVSPD--LPEAKK 409 (623)
Q Consensus 374 Vv~i~~~kV~~f~G-~~Ls~~~~S~i~iNPd--~pe~~~ 409 (623)
||.|++++|.+|+| .+|+....|+|..+|+ +|++.+
T Consensus 68 vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~~~~~~~~~ 106 (119)
T 1o7i_A 68 VVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGFPESSQ 106 (119)
T ss_dssp EEEEEEEEEEEETTEEEEEECTTCEEEECCCTTCCCGGG
T ss_pred EEEEEeEEEEEeCCEEEEEECCCEEEEEcCCcCCCcHHH
Confidence 99999999999999 5899999999999874 444443
No 12
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.31 E-value=1.5e-11 Score=106.33 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=78.2
Q ss_pred ccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCC
Q 006973 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKS 372 (623)
Q Consensus 293 ~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~ 372 (623)
+|++|+||.. +..+||+|+|++++++.+++++ +|++..+|+++|.|+|| +|++||||+.|.. ....+
T Consensus 4 ~~~~I~dL~~----~~~v~v~g~V~~~~~~r~~~~~-~G~~~~v~~~~l~D~TG-~IrvtlW~~~a~~-------~l~~G 70 (105)
T 3dm3_A 4 DTYNIGELSP----GMTATFEGEVISALPIKEFKRA-DGSIGKLKSFIVRDETG-SIRVTLWDNLTDI-------DVGRG 70 (105)
T ss_dssp CEECGGGCCS----SEEEEEEEEEEEEEEEEEEECT-TSCEEEEEEEEEEETTE-EEEEEEEGGGGGS-------CCCTT
T ss_pred cceEHHHCCC----CCeEEEEEEEEECCCceEEEcC-CCCeeEEEEEEEECCCC-cEEEEEECccccc-------ccCCC
Confidence 5789999975 2689999999999999999876 68889999999999999 8999999999985 14678
Q ss_pred cEEEEEeEEeeec--cceeeecccceEEE
Q 006973 373 PIVAIKSLKVGDF--QGISLSTLGRSTVL 399 (623)
Q Consensus 373 ~Vv~i~~~kV~~f--~G~~Ls~~~~S~i~ 399 (623)
.+|.| .++|+.+ ++..|+....|.|.
T Consensus 71 dvv~i-~g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 71 DYVRV-RGYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp CEEEE-EEEEEECTTSSEEEEEEEEEEEE
T ss_pred CEEEE-EEEEEEccCCCEEEEeCCceEEE
Confidence 99999 6777654 46889888777664
No 13
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.21 E-value=6.9e-11 Score=104.28 Aligned_cols=102 Identities=25% Similarity=0.361 Sum_probs=87.5
Q ss_pred CeeeccccCCCCCCeEEEEEEEeeccccccccCCC-cccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARG-EGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g-~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
.+++|++|.|+.. .+|.|+|..++++|+|.+.+| ++++++++|.|++| +|++++|++.++.+ +.|++|++|.|++.
T Consensus 6 ~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG-~I~~t~w~~~~~~~-~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 6 RMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG-ELRAVFWTENIKLL-KKFREGDVIRIKDV 82 (115)
T ss_dssp CCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE-EEEEEEETTGGGGG-GTCCTTSEEEEEEE
T ss_pred ceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC-eEEEEEeCchhhhh-hcCCCCCEEEEEee
Confidence 4689999999864 599999999999998876665 37899999999999 99999999988766 67999999999998
Q ss_pred EEEecCCCccccCCceEEEEccCcEEEEccCc
Q 006973 252 TLRVANKQFKTVQNDYEMNLNENSEVEEAVNE 283 (623)
Q Consensus 252 ~V~~a~~~~~~~~~~yei~f~~~T~I~~~~d~ 283 (623)
.|+.. |+ ..++|.+...+.|++++|-
T Consensus 83 ~v~~~---f~---g~~qL~~~~~~~i~~~~~~ 108 (115)
T 2k50_A 83 NIRGG---FG---GRKEAHLMPRSTVEVLDPL 108 (115)
T ss_dssp EECCC---SS---SSCEEEECTTCCEEEESSC
T ss_pred EEccc---cC---CeEEEEECCCceEEECCcc
Confidence 87543 32 5699999999999998764
No 14
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=99.13 E-value=3.7e-10 Score=97.91 Aligned_cols=93 Identities=13% Similarity=0.217 Sum_probs=80.5
Q ss_pred eeeccccCCCCCCeEEEEEEEeeccccccccCCC-cccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeE
Q 006973 174 VHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARG-EGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 174 ~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g-~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~ 252 (623)
+++|++|.|+...+++.+||+.+++.| .. ..| ++++.+++|.|++| +|++++|++. |++|++|.|.|+.
T Consensus 3 ~~kI~dl~pg~~~v~v~~~V~~~~~~~-~~-k~G~~~~v~~~~l~DeTG-~I~~tlW~~~-------l~~Gdvv~i~ng~ 72 (106)
T 2k75_A 3 LVKIRDVSLSTPYVSVIGKITGIHKKE-YE-SDGTTKSVYQGYIEDDTA-RIRISSFGKQ-------LQDSDVVRIDNAR 72 (106)
T ss_dssp BCCSTTCCTTCSEEEEEEEEEEEEEEE-EE-ETTEEEEEEEEEEECSSC-EEEEEEESSC-------CCTTEEEEEEEEE
T ss_pred cEEHHHcCCCCceEEEEEEEEEccccc-cc-cCCCeeEEEEEEEEcCCC-eEEEEEEcCc-------cCCCCEEEEEeeE
Confidence 578999999988899999999999987 22 233 45699999999999 8999999986 9999999999999
Q ss_pred EEecCCCccccCCceEEEEccCcEEEEccCc
Q 006973 253 LRVANKQFKTVQNDYEMNLNENSEVEEAVNE 283 (623)
Q Consensus 253 V~~a~~~~~~~~~~yei~f~~~T~I~~~~d~ 283 (623)
+... ...++|.++..+.|+++.+.
T Consensus 73 v~~~-------~g~~~L~v~~~~~I~~~~~~ 96 (106)
T 2k75_A 73 VAQF-------NGYLSLSVGDSSRIESVNVN 96 (106)
T ss_dssp EEEE-------TTEEEEEECTTSEEEECCSC
T ss_pred EeEE-------CCEEEEEECCcEEEEECCCC
Confidence 8764 35689999999999998754
No 15
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.02 E-value=2.2e-09 Score=91.47 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=71.5
Q ss_pred ccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCCcE
Q 006973 295 VPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPI 374 (623)
Q Consensus 295 ~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~V 374 (623)
.+|+||.. +..++++|.|.+++++..+.++ +|.+...+++.|.|+|| +|++|||++.|.. .+..+.+
T Consensus 3 ~kI~dl~~----g~~v~i~~~V~~~~~~r~~~~~-~G~~~~v~~~~l~DeTG-~I~~tlW~~~~~~-------~i~~Gdv 69 (97)
T 3e0e_A 3 YKISELMP----NLSGTINAEVVTAYPKKEFSRK-DGTKGQLKSLFLKDDTG-SIRGTLWNELADF-------EVKKGDI 69 (97)
T ss_dssp ECGGGCCT----TEEEEEEEEEEEECCCEEEC-----CCEEEEEEEEEETTE-EEEEEEEGGGGGC-------CCCTTCE
T ss_pred eEHHHCCC----CCcEEEEEEEEECCCceEEEcC-CCCeeEEEEEEEECCCC-cEEEEEECCcccc-------ccCCCCE
Confidence 36778764 3689999999999999988776 57778899999999999 9999999999975 1467999
Q ss_pred EEEEeEEeeeccc-eeeecccceEEE
Q 006973 375 VAIKSLKVGDFQG-ISLSTLGRSTVL 399 (623)
Q Consensus 375 v~i~~~kV~~f~G-~~Ls~~~~S~i~ 399 (623)
|.+ .++|+.|.| ..|+....+.|.
T Consensus 70 v~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 70 AEV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EEE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EEE-EEEEEEcCCeEEEEECCCcEEE
Confidence 999 679888765 688887777663
No 16
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.93 E-value=8.1e-09 Score=93.82 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=83.5
Q ss_pred CeeeccccCCCCCCeEEEEEEEeecccc---ccccCCC-------cccEEEEEEEeCCCCeEEEEEechHHHHHHhhccc
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMR---TYKNARG-------EGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQL 242 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r---~~~~~~g-------~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~e 242 (623)
.+++|++|.|...+.++.|||+..++++ ++....| ++++.++.|.|++| .|+.|+|++.++ +|++
T Consensus 15 ~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG-~I~ftlW~e~~~----~l~~ 89 (145)
T 1wjj_A 15 VFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG-CILFTARNDQVD----LMKP 89 (145)
T ss_dssp SSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC-EEEEEECTTHHH----HTCT
T ss_pred cceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCc-EEEEEEecCCcC----cCCC
Confidence 4789999999998999999999999988 5543334 67899999999999 999999998765 4889
Q ss_pred CcEEEEeeeEEEecCCCccccCCceEEEEccCcEEEEccC
Q 006973 243 GKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVN 282 (623)
Q Consensus 243 G~vy~is~~~V~~a~~~~~~~~~~yei~f~~~T~I~~~~d 282 (623)
|++|.|.|+.++..+ ...+|.++.++.|++.++
T Consensus 90 Gd~v~i~na~v~~~~-------G~~~L~vgk~g~Ie~~~e 122 (145)
T 1wjj_A 90 GATVILRNSRIDMFK-------GTMRLGVDKWGRIEATGA 122 (145)
T ss_dssp TCEEEEEEEEEEEET-------TEEEEEECTTCCBCCCSC
T ss_pred CCEEEEeccEEEeEC-------CEEEEEECCCEEEEECCC
Confidence 999999999887543 358999999999988754
No 17
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.88 E-value=1.3e-08 Score=88.23 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=76.2
Q ss_pred cccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCC
Q 006973 292 FNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADK 371 (623)
Q Consensus 292 ~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~ 371 (623)
|+|++|.||.. ....++++|.|.++++.. .++ +|++...+++.|.|+|| +|++|||++. + ..
T Consensus 1 ~~~~kI~dl~p---g~~~v~v~~~V~~~~~~~--~~k-~G~~~~v~~~~l~DeTG-~I~~tlW~~~---l--------~~ 62 (106)
T 2k75_A 1 SDLVKIRDVSL---STPYVSVIGKITGIHKKE--YES-DGTTKSVYQGYIEDDTA-RIRISSFGKQ---L--------QD 62 (106)
T ss_dssp CCBCCSTTCCT---TCSEEEEEEEEEEEEEEE--EEE-TTEEEEEEEEEEECSSC-EEEEEEESSC---C--------CT
T ss_pred CCcEEHHHcCC---CCceEEEEEEEEEccccc--ccc-CCCeeEEEEEEEEcCCC-eEEEEEEcCc---c--------CC
Confidence 57889999975 234699999999999876 344 57767799999999999 8999999988 2 56
Q ss_pred CcEEEEEeEEeeeccce-eeecccceEEEE
Q 006973 372 SPIVAIKSLKVGDFQGI-SLSTLGRSTVLV 400 (623)
Q Consensus 372 ~~Vv~i~~~kV~~f~G~-~Ls~~~~S~i~i 400 (623)
|.+|.++++++..|+|. +|+....|+|..
T Consensus 63 Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~ 92 (106)
T 2k75_A 63 SDVVRIDNARVAQFNGYLSLSVGDSSRIES 92 (106)
T ss_dssp TEEEEEEEEEEEEETTEEEEEECTTSEEEE
T ss_pred CCEEEEEeeEEeEECCEEEEEECCcEEEEE
Confidence 89999999999999995 898888887764
No 18
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.71 E-value=1.2e-07 Score=82.49 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=76.9
Q ss_pred CeeeccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeE
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~ 252 (623)
++.+|++|.|+..+.++.|||+.+|..+. ......++|.|++| .|++++|++. -.+.|++|++|.|.|+.
T Consensus 4 ~~~kI~dl~~~~~~v~v~~~V~~~~~~~~------~~~~~~~~l~DeTG-~I~~t~W~~~---~~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 4 QLTKIVDIVENGQWANLKAKVIQLWENTH------ESISQVGLLGDETG-IIKFTIWKNA---ELPLLEQGESYLLRSVV 73 (109)
T ss_dssp CBCCTTTCCSTTCEEEEEEEEEEEEECCC------SSEEEEEEEECTTC-CEEEEEEGGG---CCCCCCTTCEEEEEEEE
T ss_pred CceEHHHCCCCCCcEEEEEEEEEeEcCCC------CeEEEEEEEECCCC-eEEEEEECcc---cccccCCCCEEEEEEEE
Confidence 46789999998778899999999987432 23466799999999 8999999943 22479999999999999
Q ss_pred EEecCCCccccCCceEEEEccCcEEEEccCc
Q 006973 253 LRVANKQFKTVQNDYEMNLNENSEVEEAVNE 283 (623)
Q Consensus 253 V~~a~~~~~~~~~~yei~f~~~T~I~~~~d~ 283 (623)
+...+ ...+|.++..+.|++.+++
T Consensus 74 v~~~~-------G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 74 VGEYN-------DRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp EEEET-------TEEEEEECSSSEEEECSSC
T ss_pred EEEEC-------CEEEEEECCceEEEECCCc
Confidence 97764 3489999999999987553
No 19
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.65 E-value=1.5e-06 Score=94.32 Aligned_cols=260 Identities=13% Similarity=0.076 Sum_probs=162.2
Q ss_pred eEEEEEeCcccceeeccccccccccccCccceeeEEEEcceeeeccCCCceEEEEEEeeeeeccccchhhccccCCCCCc
Q 006973 41 RYMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKCEVVSPALEMEIKIEVKSDESG 120 (623)
Q Consensus 41 ryr~~lSDG~~~~~~mlat~ln~~v~~~~l~~~siirl~~y~~~~~~~~~~~vlii~~lev~~~~~~~~~~~~~~~~~~~ 120 (623)
-|.+.|-|....+++.++.++-+... ..|+.|.++.|.++.+.....+ ...+... +++.-...+ .
T Consensus 40 ~~~~~L~De~G~I~at~~~~~~~~f~-~~l~eG~vy~Is~~~V~~~~~~---------y~~~~~~--~ei~~~~~T---~ 104 (444)
T 4gop_C 40 LFSVNLLDDSGEIKATGFNDAVDRFY-PLLQENHVYLISKARVNIAKKQ---------FSNLQNE--YEITFENST---E 104 (444)
T ss_dssp EEEEEEECSSCEEEEEEETHHHHHHT-TTCCTTCEEEEESCEEEECCGG---------GCSCCCS--EEEEECTTC---E
T ss_pred EEEEEEEcCCCEEEEEEeHHHHHHHH-HheecCCEEEEcCCEEEecCCc---------cccCCCC--EEEEEcCCc---E
Confidence 36899999988899988877666554 4799999999999988643221 0000000 001000000 0
Q ss_pred ccCCCCCccccCCCCCCcccCchhhhhhhhhhhhhccccCCCCccccccCCcCeeeccccCCC--CCCeEEEEEEEeecc
Q 006973 121 IIFKPKQEDEVKKDGPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPY--QGNWTIKVRVTSKGN 198 (623)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~L~p~--~~~w~I~~RV~~K~~ 198 (623)
+..-+.. ..-| . ..-.++||++|... ...--|.|.|+..++
T Consensus 105 V~~~~d~-----------~~iP----------------------~----~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~ 147 (444)
T 4gop_C 105 IEECTDA-----------TDVP----------------------E----VKYEFVRINELESVEANQQCDVIGILDSYGE 147 (444)
T ss_dssp EEECSCC-----------SSSC----------------------C----CCCCBCCGGGGGGSCSSCCCBEEEEEEEECC
T ss_pred EEEccCc-----------ccCc----------------------c----eeecccCHHHHhccCCCCceEEEEEEEEcCC
Confidence 0000000 0000 0 01236788888653 234669999999999
Q ss_pred ccccccC-CC-cccEEEEEEEeCCCCeEEEEEechHHHHHHh--hcccCcEEEEeeeEEEecCCCccccCCceEEEEccC
Q 006973 199 MRTYKNA-RG-EGCVFNVELTDEDGTQIQATMFNEAARKFYD--RFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNEN 274 (623)
Q Consensus 199 ~r~~~~~-~g-~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~--~l~eG~vy~is~~~V~~a~~~~~~~~~~yei~f~~~ 274 (623)
++++... +| ++...++.|.|++|..|++|+|++.|+.|.. .+..|.|+.|.+++|+.-+++ .|+....
T Consensus 148 ~~~i~~k~~g~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~--------~ls~~~~ 219 (444)
T 4gop_C 148 LSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR--------SLSMFSS 219 (444)
T ss_dssp CEEECCTTTCSCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS--------EEECCTT
T ss_pred cEEEEEccCCceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe--------EEecccc
Confidence 9988643 23 4668899999999999999999999999883 368899999999999754332 4556666
Q ss_pred cEEEEccCcC------------------CCCC---------------CCccccccccccccc-c---CCcceeEEEEEEE
Q 006973 275 SEVEEAVNET------------------AFIP---------------QTKFNFVPIDELGRY-V---NGTELVDIIGVVQ 317 (623)
Q Consensus 275 T~I~~~~d~~------------------~~iP---------------~~~~~f~~i~di~~~-~---~~~~~vDVIGvV~ 317 (623)
|+|..-+|.| ..+. .......+|++|.+. + ++...+.|.|.|.
T Consensus 220 s~i~inPdipea~~l~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~ 299 (444)
T 4gop_C 220 STMLINPDITESHVLRGWYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVV 299 (444)
T ss_dssp CEEEESCSSHHHHHHHHHHHHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEE
T ss_pred ceEEECCCCHHHHHHHHHHHcCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEE
Confidence 6666543310 0010 012345678887652 1 2345788999999
Q ss_pred EeCCce-------------EEEEccCC--------ce---ee---EEEEEEEeCCccEEEEEEechhhhhh
Q 006973 318 NVSPTM-------------SIRRKSNN--------EM---VP---KRDITVADETKRTVTVSLWNELATNV 361 (623)
Q Consensus 318 ~v~~~~-------------~i~~k~~g--------~~---~~---kr~i~l~D~sg~~I~vtLWg~~A~~~ 361 (623)
.+..-. .+....+| +. .. +..+.|.|.|| .+.+++||+.|+++
T Consensus 300 ~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg-~~~~~~F~~~a~~l 369 (444)
T 4gop_C 300 YIKQENLYYTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATG-QMWLSGFNEDATQL 369 (444)
T ss_dssp EECCTTCEEEECCSTTCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTE-EEEEEECHHHHHHH
T ss_pred EEcCCceEEccCCcccCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCC-CEEEEEehHHHHHH
Confidence 986421 11111112 11 12 34789999999 78999999999854
No 20
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.64 E-value=7.3e-06 Score=81.73 Aligned_cols=177 Identities=13% Similarity=0.126 Sum_probs=122.6
Q ss_pred ccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCC
Q 006973 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKS 372 (623)
Q Consensus 293 ~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~ 372 (623)
.+++|++|... .....+.|.|+..++++.+..+. .+....++.|.|++| .|++|+|++.|..|.+. +..|
T Consensus 7 ~~~~I~~L~p~---~~~w~I~~rV~~k~~~r~~~~~~--~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~----l~~G 76 (246)
T 1jmc_A 7 KVVPIASLTPY---QSKWTICARVTNKSQIRTWSNSR--GEGKLFSLELVDESG-EIRATAFNEQVDKFFPL----IEVN 76 (246)
T ss_dssp CBCCGGGCCTT---CCCCEEEEEEEEECCCEEEECSS--CEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGG----CCTT
T ss_pred ceEEHHHCCCC---CCceEEEEEEEEecccceeeCCC--CCceEEEEEEECCCC-eEEEEEChHHHHHhhhh----cccC
Confidence 57889999753 23578999999999999886542 346678999999999 99999999999987543 5779
Q ss_pred cEEEEEeEEeeeccc--------eeeecccceEEEEcCChHHHHHHHHHHHhCCCccceeeecCCcCccccCCccccccc
Q 006973 373 PIVAIKSLKVGDFQG--------ISLSTLGRSTVLVSPDLPEAKKLKSWYESEGKGTSMASIGSGLGSLAKNGARSMYSD 444 (623)
Q Consensus 373 ~Vv~i~~~kV~~f~G--------~~Ls~~~~S~i~iNPd~pe~~~l~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (623)
.++.|.+++|+..++ ..|.....|.|..-++.+ . + + ....+
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~~----------------~---i-----P-------~~~~~ 125 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH----------------H---L-----P-------TVQFD 125 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCSCS----------------C---C-----C-------CCCCC
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEccCcc----------------c---C-----C-------cceee
Confidence 999999999986432 245555566665544321 0 0 0 01123
Q ss_pred ceehhccccCCCCCCCCCeEEEEEEEEEEEeCCCCeEeccccccccceecCCCCeeecCcCCCCccccceeEEEEEEEEe
Q 006973 445 RVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQAMWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCD 524 (623)
Q Consensus 445 ~~ti~~i~~~~~~~~~~~~~~~v~a~I~~i~~d~~~~Y~aC~~C~KKv~~~~~~~~~C~kC~~~~~~~~~ry~l~~~i~D 524 (623)
...+++|.+. +...+..|.|.|..+..-..+ ... . +| ....+..+.|.|
T Consensus 126 f~~i~~i~~~-----~~~~~vDViG~V~~v~~~~~~--~~k---------~-~g--------------~~~~~r~~~l~D 174 (246)
T 1jmc_A 126 FTGIDDLENK-----SKDSLVDIIGICKSYEDATKI--TVR---------S-NN--------------REVAKRNIYLMD 174 (246)
T ss_dssp BCCGGGGGGS-----CTTCEEEEEEEEEEECCCEEE--EET---------T-TT--------------EEEEEEEEEEEC
T ss_pred eEEHHHHhcc-----cCCCceeEEEEEEEecCeEEE--EEe---------c-CC--------------CccEEEEEEEEC
Confidence 4567777651 223467899999999753211 110 0 11 134578899999
Q ss_pred CCCc-EEEEEehHhHHHH
Q 006973 525 GSGE-AWISIFNEEAERI 541 (623)
Q Consensus 525 ~Tg~-~~~~~F~~~ae~l 541 (623)
.||. +.+++|++.|+.+
T Consensus 175 ~sg~~i~~tLWg~~a~~~ 192 (246)
T 1jmc_A 175 TSGKVVTATLWGEDADKF 192 (246)
T ss_dssp TTCCEEEEEEEHHHHHHC
T ss_pred CCCCEEEEEEEchhhhhc
Confidence 9995 8999999999875
No 21
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.51 E-value=2.6e-07 Score=83.93 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=78.5
Q ss_pred CCccccccccccccccCCcceeEEEEEEEEeCCce---EEEEccCCc------eeeEEEEEEEeCCccEEEEEEechhhh
Q 006973 289 QTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTM---SIRRKSNNE------MVPKRDITVADETKRTVTVSLWNELAT 359 (623)
Q Consensus 289 ~~~~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~---~i~~k~~g~------~~~kr~i~l~D~sg~~I~vtLWg~~A~ 359 (623)
...-.|++|.||.. ...-+++.|.|.+++++. ...+ .+|. ....+++.|.|+|| +|++|||++++.
T Consensus 11 ~~kp~~~kI~dL~p---g~~~v~l~~kVl~~~~v~~~~~~~R-~dG~~~~~~r~~~V~~~lVgDeTG-~I~ftlW~e~~~ 85 (145)
T 1wjj_A 11 KRKPVFVKVEQLKP---GTTGHTLTVKVIEANIVVPVTRKTR-PASSLSRPSQPSRIVECLIGDETG-CILFTARNDQVD 85 (145)
T ss_dssp CCCCSSCCSTTCCT---TCCCEEEEEEEEEEEECCSSSSCCS-CSSCCSSCCCCCCCEEEEEECSSC-EEEEEECTTHHH
T ss_pred ccCccceEHHHcCC---CCCceEEEEEEEEcccccccccccc-cCCccccccCCceEEEEEEEcCCc-EEEEEEecCCcC
Confidence 33456899999975 234699999999999764 2211 2453 56788999999999 899999999886
Q ss_pred hhhhHhhhcCCCCcEEEEEeEEeeeccce-eeecccceEEEEcC
Q 006973 360 NVGQELLDNADKSPIVAIKSLKVGDFQGI-SLSTLGRSTVLVSP 402 (623)
Q Consensus 360 ~~~~~~~~~~~~~~Vv~i~~~kV~~f~G~-~Ls~~~~S~i~iNP 402 (623)
. +..|.+|.|+++.+..|+|. +|+....++|...+
T Consensus 86 ~--------l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 86 L--------MKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 121 (145)
T ss_dssp H--------TCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCS
T ss_pred c--------CCCCCEEEEeccEEEeECCEEEEEECCCEEEEECC
Confidence 5 35699999999999999995 88888777776443
No 22
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.47 E-value=9.1e-07 Score=76.88 Aligned_cols=89 Identities=11% Similarity=0.205 Sum_probs=69.8
Q ss_pred cccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechh-hhhhhhHhhhcCCCC
Q 006973 294 FVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNEL-ATNVGQELLDNADKS 372 (623)
Q Consensus 294 f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~-A~~~~~~~~~~~~~~ 372 (623)
|++|+||.. .+.-+++.|.|.++++. + .+ ...+.+.|.|+|| +|++|+|++. +.. +..|
T Consensus 5 ~~kI~dl~~---~~~~v~v~~~V~~~~~~-----~-~~--~~~~~~~l~DeTG-~I~~t~W~~~~~~~--------~~~G 64 (109)
T 2kbn_A 5 LTKIVDIVE---NGQWANLKAKVIQLWEN-----T-HE--SISQVGLLGDETG-IIKFTIWKNAELPL--------LEQG 64 (109)
T ss_dssp BCCTTTCCS---TTCEEEEEEEEEEEEEC-----C-CS--SEEEEEEEECTTC-CEEEEEEGGGCCCC--------CCTT
T ss_pred ceEHHHCCC---CCCcEEEEEEEEEeEcC-----C-CC--eEEEEEEEECCCC-eEEEEEECcccccc--------cCCC
Confidence 567888864 35679999999999753 2 23 3567899999999 8999999944 322 5679
Q ss_pred cEEEEEeEEeeeccc-eeeecccceEEEEcC
Q 006973 373 PIVAIKSLKVGDFQG-ISLSTLGRSTVLVSP 402 (623)
Q Consensus 373 ~Vv~i~~~kV~~f~G-~~Ls~~~~S~i~iNP 402 (623)
.+|.++++++.+|+| .+|+....+.|..-+
T Consensus 65 ~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 65 ESYLLRSVVVGEYNDRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp CEEEEEEEEEEEETTEEEEEECSSSEEEECS
T ss_pred CEEEEEEEEEEEECCEEEEEECCceEEEECC
Confidence 999999999999999 489888888876543
No 23
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.45 E-value=2.7e-05 Score=79.80 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=138.0
Q ss_pred CeeeccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeE
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~ 252 (623)
.++||++|.. ...-.+.|.|+.....+.- +|..-..+|.|.|.+-..|.+.+|.+..+.+-...++|||+.+.+++
T Consensus 5 ~y~~l~~l~~-~~~vnvigVV~~~~~p~~s---~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~~vk 80 (294)
T 1xjv_A 5 IYTPLNQLKG-GTIVNVYGVVKFFKPPYLS---KGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLK 80 (294)
T ss_dssp CCCCGGGCCS-SEEEEEEEEEEEEEEEEEC---SSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEE
T ss_pred eEEEHHHhhC-CCeeEEEEEEEEcCCCccC---CCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEEEEE
Confidence 4889999965 4568899999988766432 35556889999998877899999998777776666999999999999
Q ss_pred EEecCCCccccCCceEEEEccCcEEEEccCcC--CCCCCC---cc-------------------------cccccccccc
Q 006973 253 LRVANKQFKTVQNDYEMNLNENSEVEEAVNET--AFIPQT---KF-------------------------NFVPIDELGR 302 (623)
Q Consensus 253 V~~a~~~~~~~~~~yei~f~~~T~I~~~~d~~--~~iP~~---~~-------------------------~f~~i~di~~ 302 (623)
|+..+....- ..+....+-.....+ ...|.. .| .|+.|.||.
T Consensus 81 i~~~~g~~~~-------v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~~~~~~~~L~di~- 152 (294)
T 1xjv_A 81 IQVYKKETQG-------ITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQ- 152 (294)
T ss_dssp EEEETTEEEE-------EEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---CCCCGGGCC-
T ss_pred EEEECCeEEE-------EccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccCCCCceeEHHHcc-
Confidence 9876654322 112211111221110 001111 11 344666664
Q ss_pred ccCCcceeEEEEEEEEeCCc--eEEEE-ccCCceeeEEEEEEEeC--------------CccEEEEEEechhhhhhhhHh
Q 006973 303 YVNGTELVDIIGVVQNVSPT--MSIRR-KSNNEMVPKRDITVADE--------------TKRTVTVSLWNELATNVGQEL 365 (623)
Q Consensus 303 ~~~~~~~vDVIGvV~~v~~~--~~i~~-k~~g~~~~kr~i~l~D~--------------sg~~I~vtLWg~~A~~~~~~~ 365 (623)
.+.++|+++.|+.+... ..+.. -.||+......+...++ ...++.|++|+++|.-. +
T Consensus 153 ---~~~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~~~~-~-- 226 (294)
T 1xjv_A 153 ---PMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVA-R-- 226 (294)
T ss_dssp ---SSCEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHHHHH-H--
T ss_pred ---cCCeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchhHHH-h--
Confidence 35799999999987532 11111 11333222111111110 11279999999998532 2
Q ss_pred hhcCCCCcEEEEEeEEeeec--------cce---eeec--ccceEEEEcC-ChHHHHHHHHHHHh
Q 006973 366 LDNADKSPIVAIKSLKVGDF--------QGI---SLST--LGRSTVLVSP-DLPEAKKLKSWYES 416 (623)
Q Consensus 366 ~~~~~~~~Vv~i~~~kV~~f--------~G~---~Ls~--~~~S~i~iNP-d~pe~~~l~~w~~~ 416 (623)
....|..|.|.+++++.- +|. .|.. ...++|.+-| +.+.+.+++++++.
T Consensus 227 --~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 289 (294)
T 1xjv_A 227 --SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLES 289 (294)
T ss_dssp --HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHHHHHH
T ss_pred --cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHHHHhh
Confidence 257799999999888754 221 2322 3456777766 55778888877653
No 24
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=98.32 E-value=5.8e-05 Score=84.40 Aligned_cols=181 Identities=16% Similarity=0.208 Sum_probs=123.9
Q ss_pred EEEEEEEeCC--CCeEEEEEechHHHHHHhhcccCcEEEEeeeEEEecCCCccccCCceEEEEccCcEEEEccCcC----
Q 006973 211 VFNVELTDED--GTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNET---- 284 (623)
Q Consensus 211 ~f~~~L~D~~--G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~~a~~~~~~~~~~yei~f~~~T~I~~~~d~~---- 284 (623)
++.+-++|-. +...-.++|+..-+ ..+.|+||++|.|.+...... +.+......+|+-...|.+.+.+..+
T Consensus 512 ~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s--~~~~~~~~lqLtAtk~T~~~~L~~~~~~~~ 588 (738)
T 1miu_A 512 VWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKS--KSKFERPSIQLTATKRTQYQQLPVSSETLL 588 (738)
T ss_dssp EEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCC--CCSSSCCSCEEEEEEEEEEEEECCCHHHHT
T ss_pred eEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCC--CccCccceEEEeecccceeEECCcchhhhc
Confidence 4567777732 34788999997644 677799999999998654333 32233456789999999999986421
Q ss_pred -CCCCCCcccccccccccc--ccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhh
Q 006973 285 -AFIPQTKFNFVPIDELGR--YVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNV 361 (623)
Q Consensus 285 -~~iP~~~~~f~~i~di~~--~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~ 361 (623)
.-.|+. .++|++|.+ ......-||++|+|+.|+.. .| ..-.+.|.|.+..-+-+..|+..+++
T Consensus 589 ~~~~pR~---~~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~-------~~---~~~~vylsD~~~nll~Ikf~~~l~eD- 654 (738)
T 1miu_A 589 QVYQPRE---SLHFSRLSDPAFQPPCSEVDVVGVVVSVVKP-------IG---LAPLVYLSDECLNLLVVKFGIDLNED- 654 (738)
T ss_dssp TTCCCCC---BCCSGGGGSSSCCTTTTEEEEEEEEEEEECC-------TT---SCCEEEEECSSSCEEEEEESSCCCSC-
T ss_pred cccCCcc---eeeHHHhcCccccCCCCceeEEEEEEEEccc-------Cc---ccceEEEEcCCCcEEEEEEecCchhh-
Confidence 112222 346666653 23345689999999999643 12 23367889999889999999998743
Q ss_pred hhHhhhcCCCCcEEEEEeEEeeec--cce-eeecccceEEEEcCCh----HHHHHHHHHHH
Q 006973 362 GQELLDNADKSPIVAIKSLKVGDF--QGI-SLSTLGRSTVLVSPDL----PEAKKLKSWYE 415 (623)
Q Consensus 362 ~~~~~~~~~~~~Vv~i~~~kV~~f--~G~-~Ls~~~~S~i~iNPd~----pe~~~l~~w~~ 415 (623)
+..+.+||+.++..... .|. .|-.+..|.+.-||.- .+.+.|+.-..
T Consensus 655 -------~~~~~~va~sNL~~r~~~~~~ip~~~a~~~t~fs~~pk~~hl~~~~~~lk~~~~ 708 (738)
T 1miu_A 655 -------IKPRVLIAASNLQCQPESTSGVPTLFAGHFSIFSASPKEAYFQEKVNNLKHAIE 708 (738)
T ss_dssp -------CCSSCEEEEEEEECCSCCSSSCCCEEECTTCEEESSCCCTTTHHHHHHHTHHHH
T ss_pred -------CccccEEEEeeeEeeccccccCceEEeccceEEecCccHhHHHHHHHHHHHhhh
Confidence 46799999999887753 243 4556778888889852 45555655443
No 25
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=98.23 E-value=8.8e-05 Score=80.84 Aligned_cols=343 Identities=13% Similarity=0.092 Sum_probs=193.6
Q ss_pred cCeeeccccCC-CCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCC-------eE-----EEEEechHHHHHHh
Q 006973 172 RRVHPLVSLNP-YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGT-------QI-----QATMFNEAARKFYD 238 (623)
Q Consensus 172 ~~~~~I~~L~p-~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~-------~I-----~at~~~~~~~kf~~ 238 (623)
..+++|+++.- ....-.+.|-|+.....+. .+|..-.++|.|.|++=. .| .+.+|.+..+.+=.
T Consensus 36 y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~---T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~LP~ 112 (495)
T 1jb7_A 36 YEYVELAKASLTSAQPQHFYAVVIDATFPYK---TNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPI 112 (495)
T ss_dssp CCBCCTTTSCSSCCSCEEEEEEEEEECCCEE---CSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCC
T ss_pred CccEEHHHHHhccCCeEEEEEEEeecCCcee---cCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHCCC
Confidence 35899998753 3457889999998776653 234434789999995432 47 99999876555554
Q ss_pred hcccCcEEEEeeeEEEecCCCcccc-CCce---EEEEccCcEEE--EccC---cCCCCCCC----cc-------------
Q 006973 239 RFQLGKVYYISRGTLRVANKQFKTV-QNDY---EMNLNENSEVE--EAVN---ETAFIPQT----KF------------- 292 (623)
Q Consensus 239 ~l~eG~vy~is~~~V~~a~~~~~~~-~~~y---ei~f~~~T~I~--~~~d---~~~~iP~~----~~------------- 292 (623)
...+|||+.+.+++|+..+....-. ...+ =..|....... ++.. .....|.. .|
T Consensus 113 V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~~L 192 (495)
T 1jb7_A 113 IHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNL 192 (495)
T ss_dssp CCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHHHH
Confidence 4489999999999999877654321 1121 13344333000 0000 00111110 11
Q ss_pred -----------------cccccc-ccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEe
Q 006973 293 -----------------NFVPID-ELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLW 354 (623)
Q Consensus 293 -----------------~f~~i~-di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLW 354 (623)
.|..|. ||. .+.++|++|.|+.+... ++ .+-.+.+-|.|+..- ++++
T Consensus 193 R~W~~~~~~~~~~~~~~~f~~L~~di~----~~~f~DLv~qVv~~~~~-------d~---~~~~L~VwDgT~~~~-~~~~ 257 (495)
T 1jb7_A 193 RKWANQYFSSYSVISSDMYTALNKAQA----QKGDFDVVAKILQVHEL-------DE---YTNELKLKDASGQVF-YTLS 257 (495)
T ss_dssp HHHHHHHHHHSCSSCGGGSCCGGGGGG----CSSCEEEEEEEEEEEEC-------SS---SEEEEEEEETTCCEE-EEEE
T ss_pred HHHHHhcccccccccccchhhhhhhhc----cCCceeEEEEEeEEecc-------CC---CeEEEEEEeCCCCCc-ceee
Confidence 123333 443 46799999999988532 11 356788889998533 2333
Q ss_pred chhhhhhhhHhhhcCCCCcEEEEEeEEeeeccc-e-eeecccceE-EEEcCChHHHHHHHHHHHhCCCccceeeecCCcC
Q 006973 355 NELATNVGQELLDNADKSPIVAIKSLKVGDFQG-I-SLSTLGRST-VLVSPDLPEAKKLKSWYESEGKGTSMASIGSGLG 431 (623)
Q Consensus 355 g~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G-~-~Ls~~~~S~-i~iNPd~pe~~~l~~w~~~~g~~~~~~~~~~~~~ 431 (623)
.. ..|+ ....|.|+.|...+..+-.+ . .+-...-.. ..+.|.-....++++++...... .-..+.....
T Consensus 258 ~~--~~fP-----~~~~G~Vlri~~~~~de~~~~l~~~~~~~w~ni~~~~~~sk~~ke~~~~~l~~~~~-~~~~~~~~~~ 329 (495)
T 1jb7_A 258 LK--LKFP-----HVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFIQSSKLAKELRAKIQDDHSV-EVASLKKNVS 329 (495)
T ss_dssp ET--TTCT-----TCCTTCEEEEEEEEECTTCCSSCEEEEEEEEEEEEECTTCHHHHHHHHHSCCCCHH-HHHHTTSSSC
T ss_pred cc--ccCC-----ceeeEEEEEEecCccchhhhhhhhhccccccceeEEcccchhhhhhhhcccchhhh-hhhhcccccC
Confidence 22 1121 12347888888777664322 1 111111122 23556555566777765433200 0000000000
Q ss_pred ccccC--Ccc--cccccceehhccccCCCCC-CCCC-eEEEEEEEEEEEeCCC--CeEeccccccccceecCCCCeeecC
Q 006973 432 SLAKN--GAR--SMYSDRVSLTHITSNPSLG-DEKP-VFFSIKAYISLIKPDQ--AMWYRACKTCNKKVTDALGSGYWCE 503 (623)
Q Consensus 432 ~~~~~--~~~--~~~~~~~ti~~i~~~~~~~-~~~~-~~~~v~a~I~~i~~d~--~~~Y~aC~~C~KKv~~~~~~~~~C~ 503 (623)
..... ... --.....||.||...+.-. +-.. ..|.+.+.|+.+-+.+ .|.-+-|+.|++. ... .|
T Consensus 330 ~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P~~i~df~~~~~~~~~~~-~s~-~g----- 402 (495)
T 1jb7_A 330 LNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKS-SSL-KG----- 402 (495)
T ss_dssp SSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEESSSGGGGEEEEETTTTEE-ECS-TT-----
T ss_pred CCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecCCCHHHhhhhhccccccc-ccc-cc-----
Confidence 00000 000 0012457889987742100 0011 3488888888886642 4666668999877 221 11
Q ss_pred cCCCCccccceeEEEEEEEEeCC-------CcEEEEEehHhHHHHhCCCHHHHHH
Q 006973 504 GCQKNDEECSLRYIMVARVCDGS-------GEAWISIFNEEAERIIGCSADELNE 551 (623)
Q Consensus 504 kC~~~~~~~~~ry~l~~~i~D~T-------g~~~~~~F~~~ae~llG~sA~el~~ 551 (623)
.|++. .+.|++.+.|.|.| +.+.+.++|+.|.++|+++|.+|.+
T Consensus 403 ~~~~~----~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~l~a~nL~~ 453 (495)
T 1jb7_A 403 ASGKG----DNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKADNLHK 453 (495)
T ss_dssp CGGGC----EEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTSSCCCCTTT
T ss_pred ccCCC----CceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecCCChHhhhc
Confidence 33332 35788999999999 9999999999888888899988853
No 26
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.2e-05 Score=68.71 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=77.6
Q ss_pred ccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCC
Q 006973 293 NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKS 372 (623)
Q Consensus 293 ~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~ 372 (623)
++++|++|.... .-..+.|.|+..+++..+..+ +| +....++.|.|++| +|++|+|++.|..|.+. +..|
T Consensus 3 ~~~~Is~L~p~~---~~w~I~~rV~~k~~~r~~~~~-~~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~----l~eG 72 (114)
T 1ynx_A 3 PIFAIEQLSPYQ---NVWTIKARVSYKGEIKTWHNQ-RG-DGKLFNVNFLDTSG-EIRATAFNDFATKFNEI----LQEG 72 (114)
T ss_dssp CBCCGGGCCTTT---CCCEEEEEEEEEEEEEEEECS-SC-EEEEEEEEEEETTE-EEEEEECHHHHHHHHHH----SCSS
T ss_pred ceEEHHHCCCCC---CceEEEEEEEEeccceEEecC-CC-CceEEEEEEECCCC-eEEEEECHHHHHHHHhh----cccC
Confidence 478899997532 348899999999999988764 34 56778999999999 99999999999998654 5679
Q ss_pred cEEEEEeEEeee----cc----ceeeecccceEEEEcCC
Q 006973 373 PIVAIKSLKVGD----FQ----GISLSTLGRSTVLVSPD 403 (623)
Q Consensus 373 ~Vv~i~~~kV~~----f~----G~~Ls~~~~S~i~iNPd 403 (623)
.|+.|.+++|+. |+ ...|+....|.|..-+|
T Consensus 73 ~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 73 KVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp SEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred cEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 999999999985 33 12455556666655443
No 27
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.14 E-value=5.9e-05 Score=77.20 Aligned_cols=143 Identities=15% Similarity=0.232 Sum_probs=98.3
Q ss_pred ccccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCC
Q 006973 291 KFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNAD 370 (623)
Q Consensus 291 ~~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~ 370 (623)
.|.|++|++|. .+..|+|||+|++++++.. + .|+ --...|+|.|.|...|.|.+|.+..+.++. ...
T Consensus 3 ~y~y~~l~~l~----~~~~vnvigVV~~~~~p~~--s--~G~-d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~----v~~ 69 (294)
T 1xjv_A 3 NYIYTPLNQLK----GGTIVNVYGVVKFFKPPYL--S--KGT-DYCSVVTIVDQTNVKLTCLLFSGNYEALPI----IYK 69 (294)
T ss_dssp CCCCCCGGGCC----SSEEEEEEEEEEEEEEEEE--C--SSS-SEEEEEEEECTTCCEEEEEEEESSGGGSCC----CCS
T ss_pred cceEEEHHHhh----CCCeeEEEEEEEEcCCCcc--C--CCC-eEEEEEEEEcCCCCCEEEEEECCChHHCCC----CCC
Confidence 47899999884 3678999999999986642 2 354 457899999999888999999877666542 125
Q ss_pred CCcEEEEEeEEeeeccce-ee-ecccceEEEEcCC--------------------hHHHHHHHHHHHhCCCccceeeecC
Q 006973 371 KSPIVAIKSLKVGDFQGI-SL-STLGRSTVLVSPD--------------------LPEAKKLKSWYESEGKGTSMASIGS 428 (623)
Q Consensus 371 ~~~Vv~i~~~kV~~f~G~-~L-s~~~~S~i~iNPd--------------------~pe~~~l~~w~~~~g~~~~~~~~~~ 428 (623)
.|.||.+++++|..|+|. .+ +....+.+.+++. ..-+..||.|+.+... .
T Consensus 70 ~GDII~l~~vki~~~~g~~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~------~-- 141 (294)
T 1xjv_A 70 NGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMS------P-- 141 (294)
T ss_dssp TTCEEEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEEEEEEEEECCeEEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccC------C--
Confidence 689999999999999985 33 2222333344431 1236679999975321 0
Q ss_pred CcCccccCCcccccccceehhccccCCCCCCCCCeEEEEEEEEEEEe
Q 006973 429 GLGSLAKNGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIK 475 (623)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~ti~~i~~~~~~~~~~~~~~~v~a~I~~i~ 475 (623)
......|+||.+ ..||.+.|.|..+-
T Consensus 142 -------------~~~~~~L~di~~--------~~f~DLv~qVv~v~ 167 (294)
T 1xjv_A 142 -------------SWTLLKLCDVQP--------MQYFDLTCQLLGKA 167 (294)
T ss_dssp ---------------CCCCGGGCCS--------SCEEEEEEEEEEEE
T ss_pred -------------CCceeEHHHccc--------CCeeeEEEEEEEEE
Confidence 011235676654 25899999999764
No 28
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=97.87 E-value=5e-05 Score=71.43 Aligned_cols=90 Identities=10% Similarity=0.217 Sum_probs=70.8
Q ss_pred cccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCC----ccEEEEEEechhhhhhhhHhhh
Q 006973 292 FNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADET----KRTVTVSLWNELATNVGQELLD 367 (623)
Q Consensus 292 ~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s----g~~I~vtLWg~~A~~~~~~~~~ 367 (623)
+.|+++.++.+.+..+..|+|||||+++++... +. .|+.--...|+|.|.| +..|.|.++.+..+.++.
T Consensus 27 ~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~--S~-rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~---- 99 (187)
T 1qzg_A 27 LTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQ--SL-HGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPV---- 99 (187)
T ss_dssp EEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEE--CS-STTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCC----
T ss_pred eeEEEHHHHHhhccCCCEEEEEEEEEEccCcee--cC-CCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCC----
Confidence 568888887765667889999999999998742 21 2543467899999999 568999999887777643
Q ss_pred cCCCCcEEEEEeEEeeeccce
Q 006973 368 NADKSPIVAIKSLKVGDFQGI 388 (623)
Q Consensus 368 ~~~~~~Vv~i~~~kV~~f~G~ 388 (623)
....|.||.++.++|..|+|.
T Consensus 100 V~~~GDIIlL~rvkiq~~~g~ 120 (187)
T 1qzg_A 100 IKQVGQPLLLHQITLRSYRDR 120 (187)
T ss_dssp CCSTTCEEEEEEEEEEEETTE
T ss_pred CCCCCCEEEEEEEEEEEECCe
Confidence 125699999999999999985
No 29
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=97.64 E-value=0.0071 Score=52.86 Aligned_cols=162 Identities=14% Similarity=0.297 Sum_probs=114.8
Q ss_pred eeeccccCCCCC--CeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 174 VHPLVSLNPYQG--NWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 174 ~~~I~~L~p~~~--~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
-.-|+.|..+.+ .+...+||+.|+. +|.|.. +.+.|-++-.|....+|..++|.. +|.-|..|++|+.|++.++
T Consensus 11 tllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinlsfwqk-vdqsyqtlkvgqyyyfigg 86 (213)
T 3u58_A 11 TLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINLSFWQK-VDQSYQTLKVGQYYYFIGG 86 (213)
T ss_dssp EECGGGCCTTSCTTSEEEEEEEEEECC--CBCCST-TCCBEEEEEECTTSCEEEEEECSS-HHHHHHHCCTTCEEEEESC
T ss_pred hhhhhhhhhccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheeeeceEEEEEcc
Confidence 357888888776 5678899999986 677755 558898999999999999999986 5777788999999999999
Q ss_pred EEEecCCCccccCCceEEEEcc-CcEEEEccCcCCCCCCCccccccccccccccCCcceeEEEEEEEEeCCceEEEEccC
Q 006973 252 TLRVANKQFKTVQNDYEMNLNE-NSEVEEAVNETAFIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSN 330 (623)
Q Consensus 252 ~V~~a~~~~~~~~~~yei~f~~-~T~I~~~~d~~~~iP~~~~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~ 330 (623)
.|+.- .+..|+.|.. +-.|.+-+....+- =.-.-|+++.. ....+..|++.|+++...
T Consensus 87 evkqf-------knnlelkfkfgdyqiipketlggsg----gstllisevlk--tskqylsvlaqvvdiqss-------- 145 (213)
T 3u58_A 87 EVKQF-------KNNLELKFKFGDYQIIPKETLGGSG----GSTLLISEVLK--TSKQYLSVLAQVVDIQSS-------- 145 (213)
T ss_dssp EEEEC-------SSSEEEEECSSCCEEEESTTTTCST----TCCBCHHHHTT--CCCSEEEEEEEEEEEEEC--------
T ss_pred cHhhh-------ccceEEEEecCceEEechhhcCCCC----CceeehHHHHH--HhHHHHHHHHHhhccccC--------
Confidence 99764 3567888765 45566543221110 01123555543 134578899988876421
Q ss_pred CceeeEEEEEEEeCCc-cEEEEEEechhhhhhhh
Q 006973 331 NEMVPKRDITVADETK-RTVTVSLWNELATNVGQ 363 (623)
Q Consensus 331 g~~~~kr~i~l~D~sg-~~I~vtLWg~~A~~~~~ 363 (623)
.+ ...+.|.|.|. ..+.+.++-+.+-+..+
T Consensus 146 dk---nirlkicdnscnqelkvvifpdlcyewrd 176 (213)
T 3u58_A 146 DK---NIRLKICDNSCNQELKVVIFPDLCYEWRD 176 (213)
T ss_dssp SS---CEEEEEECTTCSCCEEEEECTTTTGGGTT
T ss_pred CC---ceEEEeecccccceeEEEEchhHhhHhhh
Confidence 22 23467889884 68999999888776533
No 30
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=97.37 E-value=0.0017 Score=70.81 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCccccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCcc-------EE-----EEEEech
Q 006973 289 QTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKR-------TV-----TVSLWNE 356 (623)
Q Consensus 289 ~~~~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~-------~I-----~vtLWg~ 356 (623)
...|.|++|+++... .+..|||||||+++++... + .|+ --...|+|.|.|-. .+ .|.++.+
T Consensus 33 ~~~y~y~~L~~a~~~--~~~~VnviGVVvd~~~P~~--T--~G~-D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~ 105 (495)
T 1jb7_A 33 GHKYEYVELAKASLT--SAQPQHFYAVVIDATFPYK--T--NQE-RYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAK 105 (495)
T ss_dssp ---CCBCCTTTSCSS--CCSCEEEEEEEEEECCCEE--C--SSS-CEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEES
T ss_pred cCCCccEEHHHHHhc--cCCeEEEEEEEeecCCcee--c--CCC-eEEEEEEEEeCCCCcccccccccccCceEEEEECC
Confidence 446899999999752 4678999999999998852 2 254 35789999998865 37 9999988
Q ss_pred hhhhhhhHhhhcC-CCCcEEEEEeEEeeeccce
Q 006973 357 LATNVGQELLDNA-DKSPIVAIKSLKVGDFQGI 388 (623)
Q Consensus 357 ~A~~~~~~~~~~~-~~~~Vv~i~~~kV~~f~G~ 388 (623)
..+.++. + ..|.||.++.++|..|+|.
T Consensus 106 ~~e~LP~-----V~~~GDII~LhrvkIq~~ng~ 133 (495)
T 1jb7_A 106 RFEDLPI-----IHRAGDIIRVHRATLRLYNGQ 133 (495)
T ss_dssp SGGGSCC-----CCEETCEEEEEEEEEEEETTE
T ss_pred ChHHCCC-----CCCCCCEEEEEEEEEEEECCc
Confidence 7666542 2 3599999999999999995
No 31
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=97.33 E-value=0.0031 Score=50.29 Aligned_cols=89 Identities=18% Similarity=0.403 Sum_probs=72.1
Q ss_pred eeeccccCCCCC--CeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 174 VHPLVSLNPYQG--NWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 174 ~~~I~~L~p~~~--~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
-.-|+.|..+.+ .+...+||+.|+. +|.|.. +.+.|-++-.|....+|..++|.. +|.-|..|++|+.|++.++
T Consensus 15 tllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinmsfwqk-vdqsyqtlkvgqyyyfigg 90 (117)
T 3u4v_A 15 TLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINMSFWQK-VDQSYQTLKVGQYYYFIGG 90 (117)
T ss_dssp EECGGGCCTTCCTTSCEEEEEEEEECC--CEECTT-SCEEEEEEEECTTSCEEEEEEESS-THHHHTTCCTTCEEEEESC
T ss_pred heehhhhhcccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheEeeceEEEEEcc
Confidence 357888888776 5678899999986 677754 568899999999999999999986 5777888999999999999
Q ss_pred EEEecCCCccccCCceEEEEcc
Q 006973 252 TLRVANKQFKTVQNDYEMNLNE 273 (623)
Q Consensus 252 ~V~~a~~~~~~~~~~yei~f~~ 273 (623)
.|+.- .+..|+.|.-
T Consensus 91 evkqf-------knnlelkfkf 105 (117)
T 3u4v_A 91 EVKQF-------KNNLELKFKF 105 (117)
T ss_dssp EEEEE-------TTEEEEEEET
T ss_pred chhhh-------ccceEEEEec
Confidence 99764 3456777654
No 32
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=95.42 E-value=1.1 Score=45.49 Aligned_cols=178 Identities=18% Similarity=0.242 Sum_probs=95.2
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eCCC------CeEEEEEechHHHHHHhh-cccCcEEEEee
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DEDG------TQIQATMFNEAARKFYDR-FQLGKVYYISR 250 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~~G------~~I~at~~~~~~~kf~~~-l~eG~vy~is~ 250 (623)
+++.+|.|||.+.-++|...+ |. .+.+|.|+ |+.| +-|++++|+..++.+... |+.|+-+.|.+
T Consensus 5 mN~V~LiGrL~~dPelr~t~~--G~-~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGN--GM-AVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTT--SC-EEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred eeEEEEEEEECCCceEEECCC--CC-EEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 467899999999888887653 22 45566552 2335 248999999999999999 99999999985
Q ss_pred eEEEecCCCcc--ccCCceEEEEccCcEEEEccCcCCCCCCCccccccccc-ccc-cc-CCcceeEEEEEEEEeCCceEE
Q 006973 251 GTLRVANKQFK--TVQNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDE-LGR-YV-NGTELVDIIGVVQNVSPTMSI 325 (623)
Q Consensus 251 ~~V~~a~~~~~--~~~~~yei~f~~~T~I~~~~d~~~~iP~~~~~f~~i~d-i~~-~~-~~~~~vDVIGvV~~v~~~~~i 325 (623)
. +... .|. .....|.+.+.-+ .|..+... +. ...| .-. .+ ..-..|-++|.|..--++.
T Consensus 82 ~-L~~r--~~~dkdG~~r~~~ev~a~-~i~~l~~~----~~------~~~d~~gg~rm~~mmN~V~L~GrL~~dPelr-- 145 (301)
T 1se8_A 82 T-LEYR--QWEAPEGGKRSAVNVKAL-RMEQLGTQ----PE------LIQDAGGGVRMSGAMNEVLVLGNVTRDPEIR-- 145 (301)
T ss_dssp E-EEEE--EEC-----CEEEEEEEEE-EEEECSSC----CC------EEECTTSCEEEETCEEEEEEEEEECSCCEEE--
T ss_pred E-EEee--eEECCCCCEEEEEEEEEe-EEEEeecc----cc------cccccccccchhcceeEEEEEEEECcCCEEE--
Confidence 4 3321 111 1122232222111 22222111 00 0000 000 00 0112467888876532222
Q ss_pred EEccCCceeeEEEEE----EEeCCc------cEEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 326 RRKSNNEMVPKRDIT----VADETK------RTVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 326 ~~k~~g~~~~kr~i~----l~D~sg------~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
.+. +|..+.+-.|- -.|..| .-+.|++||+.|+.+.+ +..|..|.|. .++...|.
T Consensus 146 ~t~-~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-----l~KG~~V~V~GrL~~~~y~ 211 (301)
T 1se8_A 146 YTP-AGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-----LRKGDPVMIMGRLVNEGWT 211 (301)
T ss_dssp ECT-TCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-----CCTTCEEEEEEEEEEEECC
T ss_pred ECC-CCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-----cCCCCEEEEEEEEeeeeEE
Confidence 222 35544332222 123333 26999999999988744 3456666665 45666675
No 33
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=95.21 E-value=1.2 Score=44.14 Aligned_cols=179 Identities=15% Similarity=0.222 Sum_probs=95.8
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eCCCC------eEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DEDGT------QIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~~G~------~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
.++..|.|||.+--++|...+ |. .+.+|.|+ |+.|. -|++++|+..++.....|+.|+-+.+.+
T Consensus 5 ~N~v~L~G~l~~dpelr~t~~--G~-~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G- 80 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTPG--GL-AILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEG- 80 (264)
T ss_dssp EEEEEEEEEESSCCCCEECTT--CC-EEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEE-
T ss_pred eeEEEEEEEeccCCeEEECCC--CC-EEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEE-
Confidence 467899999999888887653 22 45555542 44563 4899999999999999999999999985
Q ss_pred EEEecCCCcc-ccCCc--eEEEEccCcEEEEccCcCC-CCCCCccccccccccccccCCcceeEEEEEEEEeCCceEEEE
Q 006973 252 TLRVANKQFK-TVQND--YEMNLNENSEVEEAVNETA-FIPQTKFNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRR 327 (623)
Q Consensus 252 ~V~~a~~~~~-~~~~~--yei~f~~~T~I~~~~d~~~-~iP~~~~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~ 327 (623)
++... .|. ..... ++|..+ .|..+..... .... ..... .....-..|-++|.|..--++.. +
T Consensus 81 ~L~~~--~~~~dG~~r~~~ev~a~---~i~~l~~~~~~~~~d------~~g~~-~m~~~~N~v~l~G~l~~dpe~r~--t 146 (264)
T 2fxq_A 81 RLEYR--QWEKDGEKKSEVQVRAE---FIDPLEGRGRETLED------ARGQP-RLRRALNQVILMGNLTRDPDLRY--T 146 (264)
T ss_dssp EEEEC-----------CCEEEEEE---EEEECCCC---------------------CCCCEEEEEEEEESSCCCCEE--C
T ss_pred EEEee--eEEeCCEEEEEEEEEEE---EEEECcCCccccccc------ccccc-ccccceEEEEEEEEECCCCEEEE--C
Confidence 34332 222 11112 233322 2332211100 0000 00000 00001235778888875433332 2
Q ss_pred ccCCceeeEEEEEEEeC-------CccEEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 328 KSNNEMVPKRDITVADE-------TKRTVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 328 k~~g~~~~kr~i~l~D~-------sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
. +|+.+.+-.|-.-.. .-.-+.|++||+.|+... . +..|.-|.+. .++...|.
T Consensus 147 ~-~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~----l~KG~~V~V~G~l~~~~~~ 207 (264)
T 2fxq_A 147 P-QGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-E----LRKGDGLLVIGRLVNDSWT 207 (264)
T ss_dssp T-TCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-T----CCTTCEEEEEEEEEEEEEE
T ss_pred C-CCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-h----cCCCCEEEEEEEEEeeEEE
Confidence 2 355433222222110 112699999999998764 3 4556666665 45666664
No 34
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=94.95 E-value=0.036 Score=50.25 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=69.0
Q ss_pred CCeEEEEEEEEEEEeCCCCeEeccccccccceecCCCCeeecCcCCCCccccceeEEEEEEEEeCCCcEEEEEehHhHHH
Q 006973 461 KPVFFSIKAYISLIKPDQAMWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAER 540 (623)
Q Consensus 461 ~~~~~~v~a~I~~i~~d~~~~Y~aC~~C~KKv~~~~~~~~~C~kC~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~ 540 (623)
.+..|.|+|.|+.+... + |. . + --|.|.+.|+|+|+.+.+.+-+++-+.
T Consensus 36 ~~~~~kVKafI~tl~~~--l-~~-----------~-~----------------~~W~l~a~IsDGS~~LdV~f~~~VLt~ 84 (157)
T 3mxn_A 36 EVTTVKVKAFIVTLTGN--L-SS-----------S-G----------------GIWSITAKVSDGTAYLDVDFVDEILTS 84 (157)
T ss_dssp SCEEEEEEEEEEEECSC--C-BC-----------G-G----------------GSCBCEEEEECSSCEEEEEECHHHHHH
T ss_pred CceEEEEEEEEEEeccc--e-ee-----------c-C----------------CEEEEEEEEeCCceeEEEEeeHHHHHh
Confidence 46679999999999752 2 11 0 1 136788999999999999999999999
Q ss_pred HhCCCHHHHHHHHhhcCCchh---HHHHHHHh----cCceEEEEEEEEeeecCceeeeEEEEEEeeccCH
Q 006973 541 IIGCSADELNELKSQLGDDNS---YQMKLKEV----TWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDF 603 (623)
Q Consensus 541 llG~sA~el~~~~~~~~~~~~---~~~~l~~~----~~~~~~f~v~~k~~~y~~~~r~~~~v~~~~~vd~ 603 (623)
++|.|+.|+..++. |+.. +.+.|.++ .-..-++++.... . .-+-.|.++++++-
T Consensus 85 lIGfS~~E~~~lkk---dp~~~~~l~e~L~~~Q~~L~dl~clM~I~~~~-----~-~~~pVV~~l~d~s~ 145 (157)
T 3mxn_A 85 LIGFSVPEMKQSKK---DPLQYQKFLEGLQKCQRDLIDLCCLMTISFNP-----S-LSKAMVLALQDVNM 145 (157)
T ss_dssp HHSCCHHHHHHHTT---SHHHHHHHHHHHHHHHHHHHHCEEEEEEEEET-----T-TTEEEEEEEECCCH
T ss_pred hhCCCHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHhhccEEEEEEcC-----C-CCCCEEEEecCCCH
Confidence 99999999999873 2322 22333322 2223345554432 1 12567778888874
No 35
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=94.21 E-value=1.2 Score=35.07 Aligned_cols=88 Identities=15% Similarity=0.325 Sum_probs=65.7
Q ss_pred cCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCC-CeEEEEEechHHHHHHhhcccCcEEEEeeeEEEecCC
Q 006973 180 LNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDG-TQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANK 258 (623)
Q Consensus 180 L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G-~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~~a~~ 258 (623)
|....+..++.|.|+... . ..+-+.+-+.|.+- .+.++.+|.+++-.|.+.+..++||++..|.-...|.
T Consensus 8 lktskqylsvlaqvvdiq------s---sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiynd 78 (109)
T 3u4z_A 8 LKTSKQYLSVLAQVVDIQ------S---SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYND 78 (109)
T ss_dssp TTCCCSEEEEEEEEEEEE------C---CSSCEEEEEECSSCSSCEEEEECTTHHHHHTTTCCTTCEEEEEEEEEEESSS
T ss_pred HHHHHHHHHHHHHHhhhh------c---CCCceEEEeecccccceeEEEEchhHHHHHHhhcchhhhhhHHHHHHHHhhh
Confidence 344455677888887642 1 12457788899874 5899999999999999999999999999886555443
Q ss_pred CccccCCceEEEEccCcEEEEccCc
Q 006973 259 QFKTVQNDYEMNLNENSEVEEAVNE 283 (623)
Q Consensus 259 ~~~~~~~~yei~f~~~T~I~~~~d~ 283 (623)
...+.-+-++.|.+.+|.
T Consensus 79 -------evqlknnihssikesddq 96 (109)
T 3u4z_A 79 -------EVQLKNNIHSSIKESDDQ 96 (109)
T ss_dssp -------CEEEECCTTCEEEECSSC
T ss_pred -------HHhHhhhhhhhhhccccc
Confidence 356666678999987664
No 36
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=93.67 E-value=0.25 Score=43.74 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=46.1
Q ss_pred eeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeeccce
Q 006973 309 LVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGI 388 (623)
Q Consensus 309 ~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G~ 388 (623)
.|.++|+|.++.+ . .....++|.|.||..|++..|.+....-.+ ...+..+.+|.+.|. ++.|+|+
T Consensus 33 ~V~iVG~V~~~~~---------~--~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~--~~~~~~g~yVrV~G~-l~~f~g~ 98 (132)
T 3kdf_D 33 QVTIVGIIRHAEK---------A--PTNIVYKIDDMTAAPMDVRQWVDTDDTSSE--NTVVPPETYVKVAGH-LRSFQNK 98 (132)
T ss_dssp EEEEEEEEEEEEE---------C--SSEEEEEEECSSSSCEEEEEEC-----------CCCCTTCEEEEEEE-EEEETTE
T ss_pred EEEEEEEEEEEEE---------c--CCeEEEEEECCCCCEEEEEEEccCCCcccc--cccccCCCEEEEEEE-EEeECCE
Confidence 6899999988742 1 256789999999988999999876432110 123466888877654 8889985
Q ss_pred -eee
Q 006973 389 -SLS 391 (623)
Q Consensus 389 -~Ls 391 (623)
.+.
T Consensus 99 ~qi~ 102 (132)
T 3kdf_D 99 KSLV 102 (132)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 554
No 37
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=93.52 E-value=0.89 Score=40.73 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=41.1
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeec-cce---eeeccc----ce-EEEEcCChHHHHHHHH
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDF-QGI---SLSTLG----RS-TVLVSPDLPEAKKLKS 412 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f-~G~---~Ls~~~----~S-~i~iNPd~pe~~~l~~ 412 (623)
++.||||+..|.-..+ ....|..|.|++++++.- +|. .|.... .. ...++|+.|..++|..
T Consensus 66 tlqVtlwd~ha~~ar~----~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~ 135 (143)
T 4hik_A 66 SIRCILWDEHDFYCRN----YIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKS 135 (143)
T ss_dssp CEEEEECHHHHHHHTT----TCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHH
T ss_pred EEEEEEECcHHHHHHh----hCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHH
Confidence 8999999999876533 367799999999999854 342 233221 11 2345776687777654
No 38
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=93.35 E-value=0.32 Score=43.30 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=46.5
Q ss_pred eeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeeccce
Q 006973 309 LVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGI 388 (623)
Q Consensus 309 ~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G~ 388 (623)
.|.++|+|.++.. + .....++|.|.|| .|++.+|.+....-... .+.+..+.+|.+.| +++.|+|+
T Consensus 38 ~V~iVG~V~~~~~---------~--~~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~-~~~~~~g~yVrV~G-~v~~f~g~ 103 (136)
T 4gop_B 38 QLTFVAVVRNISR---------N--ATNVAYSVEDGTG-QIEVRQWLDSSSDDSSK-ASEIRNNVYVRVLG-TLKSFQNR 103 (136)
T ss_dssp EEEEEEEEEEEEE---------C--SSEEEEEEECSSC-EEEEEEECC---------CCSCCTTCEEEEEE-EEEEETTE
T ss_pred EEEEEEEEEEEEe---------c--CCeEEEEEECCCC-CEEEEEecccCCccccc-ccccCCCCEEEEEE-EEEEeCCE
Confidence 6899999998742 1 2477899999999 89999998654321000 12356688888775 47889985
Q ss_pred -eee
Q 006973 389 -SLS 391 (623)
Q Consensus 389 -~Ls 391 (623)
.|.
T Consensus 104 ~qi~ 107 (136)
T 4gop_B 104 RSIS 107 (136)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 554
No 39
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=92.88 E-value=0.44 Score=45.29 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=55.5
Q ss_pred CcCeeecccc-----CC--CCCCeEEEEEEEeeccccccccCCCccc-EEEEEEEeCCC--CeEEEEEechHHHHHHhhc
Q 006973 171 TRRVHPLVSL-----NP--YQGNWTIKVRVTSKGNMRTYKNARGEGC-VFNVELTDEDG--TQIQATMFNEAARKFYDRF 240 (623)
Q Consensus 171 ~~~~~~I~~L-----~p--~~~~w~I~~RV~~K~~~r~~~~~~g~g~-~f~~~L~D~~G--~~I~at~~~~~~~kf~~~l 240 (623)
.+++.+|++| .| ...+|.+.|-|+.|++.|.-.+ |+ ..-+.|.|=.+ .++...+|+++.++++ .+
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~----gk~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~-k~ 109 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNN----GKTFSIWRLNDLKDLDKYISLFLFGDVHKEHW-KT 109 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-----------CCEEEEEECSSSTTCCEEEEECHHHHHHHT-TC
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCC----CCeEEEEEEEecCCCCcEEEEEEechHHHHhc-Cc
Confidence 3456777777 22 1359999999999999987433 34 33344544333 4799999999999977 58
Q ss_pred ccCcEEEEeeeEEEec
Q 006973 241 QLGKVYYISRGTLRVA 256 (623)
Q Consensus 241 ~eG~vy~is~~~V~~a 256 (623)
++|.|+.|-|..+.+.
T Consensus 110 ~~G~ViaiLNP~i~~~ 125 (200)
T 3ebe_A 110 DQGTVIGLLNANPMKP 125 (200)
T ss_dssp CTTEEEEEESCEECCC
T ss_pred CCceEEEEECCEEccC
Confidence 9999999999987544
No 40
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=92.43 E-value=8.9 Score=37.69 Aligned_cols=174 Identities=15% Similarity=0.199 Sum_probs=94.3
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeC---CC----CeEEEEEec-hHHHHHHhhcccCcEEEEeeeEEEe
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDE---DG----TQIQATMFN-EAARKFYDRFQLGKVYYISRGTLRV 255 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~---~G----~~I~at~~~-~~~~kf~~~l~eG~vy~is~~~V~~ 255 (623)
.++..+.||+++- ++|...+ |.-.+|+|.+.=. .| +-|.+++|+ ..++...+.|+.|+-+.+.+ ++..
T Consensus 30 ~N~viLiGrLtrd-ElRyT~~--g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeG-rL~~ 105 (257)
T 4dni_A 30 VNHCVMLGVVQNI-QEGFVFE--DKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTG-RLRM 105 (257)
T ss_dssp SEEEEEEEEEEEE-EEEEETT--EEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEE-EEEE
T ss_pred CcEEEEEEEEece-EEEECCC--CCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEE-EEEE
Confidence 4688999999999 9997542 2123566654322 22 246777999 89999999999999999874 4544
Q ss_pred cCCCccccCCceEEEEccCcEEEEccCcCCCCCCCcccccccccccc--ccCCcceeEEEEEEEEeCCceEEEEccCCce
Q 006973 256 ANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDELGR--YVNGTELVDIIGVVQNVSPTMSIRRKSNNEM 333 (623)
Q Consensus 256 a~~~~~~~~~~yei~f~~~T~I~~~~d~~~~iP~~~~~f~~i~di~~--~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~ 333 (623)
...+=-.-...+|+.+.. | .|... .+....+... .+..-..|-++|.+ . ++..-.+ . |+.
T Consensus 106 ~~~~dG~kr~~~evva~~---v---------~~~~G-~~~~v~~~~g~~~M~~lNkV~LiGrL-~--DPElR~t-~-G~~ 167 (257)
T 4dni_A 106 VPQYDGSMRKYYHYPVIQ---V---------HPGCG-SVLKVKLASGAGHMKSVNSVTLVGVV-H--DIQSGFV-Y-EDA 167 (257)
T ss_dssp EEEECSSSSSEEEEEEEE---E---------CTTTC-EEEEGGGSCSSCTTSCEEEEEEEEEE-E--EEEEEEE-T-TEE
T ss_pred eECCCCCcEEEEEEEEEE---E---------EecCC-cceeeecccccccccccCEEEEEEEc-C--CCEEEEe-C-CcE
Confidence 211000112234544442 1 11000 0111122211 11112357888988 2 2221112 2 443
Q ss_pred eeEEEEEEE------eCCc-------cEEEEEEechh--hhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 334 VPKRDITVA------DETK-------RTVTVSLWNEL--ATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 334 ~~kr~i~l~------D~sg-------~~I~vtLWg~~--A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
+ -.|.|. |..+ .-++|++||+. |+ +.+. ...|.-|.+. .++...|.
T Consensus 168 V--a~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~----L~KG~~V~VeGrL~tr~~~ 229 (257)
T 4dni_A 168 V--TQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQK----VKEGNVVCVNGRLRLSPQL 229 (257)
T ss_dssp E--EEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHH----CCTTCEEEEEEEEEEEEEE
T ss_pred E--EEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhh----CCCCCEEEEEEEEEeeeEE
Confidence 3 233332 2111 25899999999 88 6543 4556666664 45666664
No 41
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=90.32 E-value=3 Score=38.04 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=47.6
Q ss_pred eeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeeccc-
Q 006973 309 LVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQG- 387 (623)
Q Consensus 309 ~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G- 387 (623)
.|+++|+|+.+.+ + -.+..++|-|.||..|+|.+|=+...... .+......|.+|-++| +|+.|+|
T Consensus 49 ~V~IvGiVv~~~~------~-----~~~~~ytIDD~TG~~I~cv~w~~~~~~~~-~~~~~l~~G~~VrV~G-~v~~fr~~ 115 (159)
T 3kf6_A 49 WIQIVGYIAAIDI------Y-----EGKHVLTVDDCSGMVLRVVFIIQDDFSMS-KRAISMSPGNVVCVFG-KINSFRSE 115 (159)
T ss_dssp EEEEEEEEEEEEE------E-----TTEEEEEEECSSSCEEEEEEEGGGCHHHH-HHHTTCCTTCEEEEEE-EEECSSSS
T ss_pred EEEEEEEEEEEEE------e-----CCEEEEEEecCCCCeEEEEEEccCCCCcc-cccccCCCCCEEEEEE-EEEeeCCE
Confidence 6899999998742 1 13577889899998899999977621110 1111245688988875 5788888
Q ss_pred eeee
Q 006973 388 ISLS 391 (623)
Q Consensus 388 ~~Ls 391 (623)
+.|.
T Consensus 116 rqI~ 119 (159)
T 3kf6_A 116 VELI 119 (159)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 4553
No 42
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=90.11 E-value=0.72 Score=40.93 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=50.3
Q ss_pred EEEEEEeCCCcEEEEEehHhHHHHhCCCHHHHHHHHhhcCCchhHHHHHHHhcCceEEEEEEEEeeecCceeeeEEEEEE
Q 006973 518 MVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRA 597 (623)
Q Consensus 518 l~~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~~~~~~~~~~~~~~~l~~~~~~~~~f~v~~k~~~y~~~~r~~~~v~~ 597 (623)
+.+.+.|+||.+.+..|.+..+. ++ .+ ...++ .| -..+|..+...|++. ....+.+
T Consensus 55 ~~~~ldD~TG~I~~~~W~~~~~~----~~--------~~--~~~~~------~g--~yVrV~G~v~~f~g~--~qi~~~~ 110 (136)
T 4gop_B 55 VAYSVEDGTGQIEVRQWLDSSSD----DS--------SK--ASEIR------NN--VYVRVLGTLKSFQNR--RSISSGH 110 (136)
T ss_dssp EEEEEECSSCEEEEEEECC----------------------CCSCC------TT--CEEEEEEEEEEETTE--EEEEESE
T ss_pred EEEEEECCCCCEEEEEecccCCc----cc--------cc--ccccC------CC--CEEEEEEEEEEeCCE--EEEEEEE
Confidence 45678999999999999864321 00 00 00111 12 366777777889985 4566677
Q ss_pred eecc-CHHHHHHHHHHHHHhhh
Q 006973 598 VAPV-DFAAESKFLLEEISKKV 618 (623)
Q Consensus 598 ~~~v-d~~~e~~~Ll~~i~~~~ 618 (623)
+.|+ |+.+..-++|+.|...+
T Consensus 111 ir~v~d~Nei~~H~Le~i~~hl 132 (136)
T 4gop_B 111 MRPVIDYNEVMFHRLEAVHAHL 132 (136)
T ss_dssp EEECSSHHHHHHHHHHHHHHHH
T ss_pred EEECCCccHHHHHHHHHHHHHH
Confidence 7777 59999999999987544
No 43
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=90.01 E-value=0.68 Score=46.24 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=47.0
Q ss_pred eeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeeccce
Q 006973 309 LVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGI 388 (623)
Q Consensus 309 ~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G~ 388 (623)
.|+++|+|+++. . + .....++|.|.||..|++.+|.+....-.+ ...+..+.+|.+.+ +|+.|+|+
T Consensus 73 ~V~ivG~V~~i~------~---~--~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~--~~~~~~G~yVrV~G-~v~~f~g~ 138 (270)
T 2pi2_A 73 QVTIVGIIRHAE------K---A--PTNIVYKIDDMTAAPMDVRQWVDTDDTSSE--NTVVPPETYVKVAG-HLRSFQNK 138 (270)
T ss_dssp EEEEEEEEEEEE------E---C--SSEEEEEEECSSSSCEEEEEECC---------CCCCCTTCEEEEEE-EEEEETTE
T ss_pred EEEEEEEEEEEE------e---c--cceEEEEEECCCCCEEEEEEEcCcCcccch--hhcCCCCCEEEEEE-EEEecCCe
Confidence 589999998863 1 2 257789999999977999999865321000 12256788888775 78899985
Q ss_pred -eee
Q 006973 389 -SLS 391 (623)
Q Consensus 389 -~Ls 391 (623)
.|.
T Consensus 139 ~qi~ 142 (270)
T 2pi2_A 139 KSLV 142 (270)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 454
No 44
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=88.93 E-value=15 Score=34.26 Aligned_cols=176 Identities=18% Similarity=0.184 Sum_probs=116.7
Q ss_pred EEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeEEEecCCCccccCCceE
Q 006973 189 IKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYE 268 (623)
Q Consensus 189 I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~~a~~~~~~~~~~ye 268 (623)
..|.|+.-.+.-+|..+.|+.++|+-+++-++. -.++-+|+-. +.+.|..++++.||++. .+.--
T Consensus 15 ~~VmVLkaTepF~Ye~~E~~~~MFHATVATetq-fF~VKVfn~~---LKeKF~pk~iI~ISdY~-----------~~~gf 79 (208)
T 3rn5_A 15 LPVMVLKAKKPFTFETQEGKQEMFHATVATEKE-FFFVKVFNTL---LKDKFIPKRIIIIARYY-----------RHSGF 79 (208)
T ss_dssp EEEEEEEECCCEEEEETTEEEEEEEEEEECSSC-EEEEEECCGG---GGGTCCTTCEEEEESBE-----------ECSSC
T ss_pred eEEEEEeccCCeeeecccccceEEEEEEeeccc-eEEEEEecch---hhhhcCCCcEEEEEecc-----------cccce
Confidence 456777777777887766555699999999988 8999999964 46688999999999863 23344
Q ss_pred EEEccCcEEEEccCc-CCCCCCCcc----ccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEe
Q 006973 269 MNLNENSEVEEAVNE-TAFIPQTKF----NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVAD 343 (623)
Q Consensus 269 i~f~~~T~I~~~~d~-~~~iP~~~~----~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D 343 (623)
|..++.|.|.++..+ .-.+|.... .=-+|++|.. ...+.+|+=+=.|... +. .+ ......|.|
T Consensus 80 LEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~-q~~Gt~V~G~F~v~KK------~v---~~--~~~~YeI~D 147 (208)
T 3rn5_A 80 LEVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLQT-QPLGTIVNGLFVVQKV------TE---KK--KNILFDLSD 147 (208)
T ss_dssp EEECTTSEEEECCTTCCCCCCHHHHHHHHSCCCHHHHHT-SCSSCEEEEEEEEEEE------EE---CS--SEEEEEEEE
T ss_pred EEEecccEEEEccCCceeecCHHHHHhcccCcchhhhhc-CCCCCEEeEEEEEEEE------Ee---cc--ceEEEEEec
Confidence 667888999987533 234564211 1235777765 3456666533333221 11 11 244668899
Q ss_pred CCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeeccc-eeeecccceEEE
Q 006973 344 ETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQG-ISLSTLGRSTVL 399 (623)
Q Consensus 344 ~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G-~~Ls~~~~S~i~ 399 (623)
+|| .|+|...|....-- +.+|.=+-+....++..++ ..|.+...|-|.
T Consensus 148 nTG-~MeVvv~G~~~~i~-------CEeGDKLrL~cFeL~~~~~~~qL~s~~HSfik 196 (208)
T 3rn5_A 148 NTG-KMEVLGVRNEDTMK-------CKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIK 196 (208)
T ss_dssp TTE-EEEEEEECSTGGGS-------CCTTCEEEEEEEEEEECSSSEEEECCTTCEEE
T ss_pred CCC-cEEEEEeccCcccc-------cCCCCeeEEEEEEEeccCCeeeEEEecceeEE
Confidence 999 79999999976542 5677766666666655444 367776666543
No 45
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=88.85 E-value=0.92 Score=38.28 Aligned_cols=65 Identities=6% Similarity=-0.003 Sum_probs=50.6
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCC----CCe-------EEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDED----GTQ-------IQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~----G~~-------I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
.++..+.||+++--++|...+ |. .+.+|.|+=.+ -+- |++++|+..++.....|+.|+-+.+.+.
T Consensus 2 ~N~v~L~G~l~~dpelR~t~~--G~-~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~ 77 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPS--GI-PHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGF 77 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECTT--SC-EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEE
T ss_pred cEEEEEEEEECCCceEEECCC--CC-EEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEE
Confidence 467889999999999997643 22 46666664222 236 9999999999999999999999999864
No 46
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=88.38 E-value=1.6 Score=38.66 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=49.8
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEE------EeCCCC------eEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVEL------TDEDGT------QIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L------~D~~G~------~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
++..+|.|||.+--++|...+ | ..+.+|.| .|+.|. -|.+++|+..++.+...|+.|+.+.|.+.
T Consensus 2 mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 78 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELKYLPS--G-SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGR 78 (134)
T ss_dssp CCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEE
Confidence 467889999999888887643 2 14555554 244453 49999999999999999999999999863
No 47
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=87.65 E-value=3.9 Score=35.12 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=49.1
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEEe-----CCCC-----e-EEEEEechHHHHHHhhcccCcEEEEeeeE
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTD-----EDGT-----Q-IQATMFNEAARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D-----~~G~-----~-I~at~~~~~~~kf~~~l~eG~vy~is~~~ 252 (623)
+++..+.||+++--++|... .|. .+.+|.|+- +.|. . |.|++|+..++.. ..|..|+-+.|.++-
T Consensus 1 MNkviL~GrL~~dPelRyTp--sG~-~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL 76 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTP--AGL-PALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFL 76 (115)
T ss_dssp CEEEEEEEEEEEECCCEECT--TSC-EEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEECcCcceEECC--CCC-EEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEE
Confidence 36788999999999999543 232 466776643 2342 1 9999999999988 889999999998763
No 48
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=87.08 E-value=3 Score=39.45 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=49.3
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeC--------------CCCeEEEEEechHHHHHHhhcccCcEEEEe
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDE--------------DGTQIQATMFNEAARKFYDRFQLGKVYYIS 249 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~--------------~G~~I~at~~~~~~~kf~~~l~eG~vy~is 249 (623)
.+..+|.+||++.-++|...+ | ..+.+|.|+=. +-+-|++++|+.+++.+...|+.|+.++|.
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~--G-~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve 80 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPS--G-AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ 80 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTT--C-CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 467899999999888887653 2 24666665421 123499999999999999999999999997
Q ss_pred e
Q 006973 250 R 250 (623)
Q Consensus 250 ~ 250 (623)
.
T Consensus 81 G 81 (199)
T 3eiv_A 81 G 81 (199)
T ss_dssp E
T ss_pred E
Confidence 4
No 49
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=86.90 E-value=3.4 Score=34.65 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=48.5
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE-----eCCCC-----e-EEEEEechHHHHHHhhcccCcEEEEeeeE
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT-----DEDGT-----Q-IQATMFNEAARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~-----D~~G~-----~-I~at~~~~~~~kf~~~l~eG~vy~is~~~ 252 (623)
+++..+.||+++--++|.-. .|. .+.+|.|. ++.|. . |.|++|+..++.+.. +..|+-+.|.++-
T Consensus 2 MN~v~L~GrLt~dPelRyTp--sG~-~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL 77 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTP--AGV-PIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFL 77 (101)
T ss_dssp CCCEEEEEEEEEECCCEECT--TCC-EEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEE
T ss_pred cCEEEEEEEECcCccEEECC--CCC-EEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEE
Confidence 57899999999999998643 232 46666653 23442 2 999999999998886 7899999998764
No 50
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=86.89 E-value=2 Score=36.78 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=50.3
Q ss_pred CCCCeEEEEEEEeeccccccccCCCcccEEEEEEE-e-----CCC----CeEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 183 YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT-D-----EDG----TQIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 183 ~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~-D-----~~G----~~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
.+++..|.|||.+--++|...+ |. .+.+|.|+ + +.| +-|++++|+..++.+...|+.|+.+.+.+.
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~~--G~-~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 79 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTSA--GA-AVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGR 79 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECTT--SC-EEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eEeEEEEEEEEccCcEEEECCC--CC-EEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEE
Confidence 4678999999999888886543 21 45566553 2 223 249999999999999999999999999864
No 51
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=86.53 E-value=4.9 Score=35.04 Aligned_cols=86 Identities=15% Similarity=0.324 Sum_probs=63.2
Q ss_pred cCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCC-CeEEEEEechHHHHHHhhcccCcEEEEeeeEEEecCC
Q 006973 180 LNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDG-TQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANK 258 (623)
Q Consensus 180 L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G-~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~~a~~ 258 (623)
|.....-.++.|.|+.... ..+-+.+-+.|.+- .+.++.+|.++|-.|.+.+..++||++..|.-...|
T Consensus 126 lktskqylsvlaqvvdiqs---------sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn- 195 (213)
T 3u58_A 126 LKTSKQYLSVLAQVVDIQS---------SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN- 195 (213)
T ss_dssp TTCCCSEEEEEEEEEEEEE---------CSSCEEEEEECTTCSCCEEEEECTTTTGGGTTCCCTTCEEEEEEEEECCSS-
T ss_pred HHHhHHHHHHHHHhhcccc---------CCCceEEEeecccccceeEEEEchhHhhHhhhhcchhhhhhHHHHHHHHhh-
Confidence 4555667788899986421 12457788899874 589999999999999999999999999887543333
Q ss_pred CccccCCceEEEEccCcEEEEcc
Q 006973 259 QFKTVQNDYEMNLNENSEVEEAV 281 (623)
Q Consensus 259 ~~~~~~~~yei~f~~~T~I~~~~ 281 (623)
....+.-+-++.|.+.+
T Consensus 196 ------devqlknnihssikesd 212 (213)
T 3u58_A 196 ------DEVQLKNNIHSSIKESD 212 (213)
T ss_dssp ------SSCEEECCTTCEEEECC
T ss_pred ------hhhhhhhhhhhhhcccC
Confidence 23555556677777653
No 52
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=86.52 E-value=0.9 Score=42.51 Aligned_cols=85 Identities=18% Similarity=0.101 Sum_probs=60.8
Q ss_pred eeeccc-cCC--CCCCeEEEEEEEeeccccccccCCCc-ccEEEEEEEeCC----CCeEEEEEechHHHHHHhhcccCcE
Q 006973 174 VHPLVS-LNP--YQGNWTIKVRVTSKGNMRTYKNARGE-GCVFNVELTDED----GTQIQATMFNEAARKFYDRFQLGKV 245 (623)
Q Consensus 174 ~~~I~~-L~p--~~~~w~I~~RV~~K~~~r~~~~~~g~-g~~f~~~L~D~~----G~~I~at~~~~~~~kf~~~l~eG~v 245 (623)
+++|++ |+. ....-.+.|-|+.-...+.- .+|. .-...|.|.|++ +..|.+.+|.+..+.+=....+|||
T Consensus 29 ~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S--~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDI 106 (187)
T 1qzg_A 29 FQSIRSSQELQKKNTIVNLFGIVKDFTPSRQS--LHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQP 106 (187)
T ss_dssp EECHHHHTSCCSSCEEEEEEEEEEEEEEEEEC--SSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCE
T ss_pred EEEHHHHHhhccCCCEEEEEEEEEEccCceec--CCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCE
Confidence 566655 321 22356788888876655431 1344 346788999988 6679999999877776665699999
Q ss_pred EEEeeeEEEecCCCc
Q 006973 246 YYISRGTLRVANKQF 260 (623)
Q Consensus 246 y~is~~~V~~a~~~~ 260 (623)
+.+.+++|+..+...
T Consensus 107 IlL~rvkiq~~~g~~ 121 (187)
T 1qzg_A 107 LLLHQITLRSYRDRT 121 (187)
T ss_dssp EEEEEEEEEEETTEE
T ss_pred EEEEEEEEEEECCeE
Confidence 999999998877653
No 53
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=86.43 E-value=4.8 Score=33.81 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=48.2
Q ss_pred CCeEEEEEEEeeccccccccCCCcccEEEEEEE-----eCCCC-----e-EEEEEechHHHHHHhhcccCcEEEEeeeE
Q 006973 185 GNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT-----DEDGT-----Q-IQATMFNEAARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 185 ~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~-----D~~G~-----~-I~at~~~~~~~kf~~~l~eG~vy~is~~~ 252 (623)
++..+.||+++--++|...+ |. .+.+|.|+ ++.|. . |++++|+..|+ ... |..|+-++|.+.-
T Consensus 8 Nkv~LiG~L~~dPelRytp~--G~-~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL 81 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPA--GI-PVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFL 81 (103)
T ss_dssp EEEEEEEEEEEECCCEECTT--SC-EEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEE
T ss_pred cEEEEEEEECCCCceEECCC--CC-EEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEE
Confidence 78999999999999997543 32 46666664 23452 3 89999999999 655 9999999998653
No 54
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=86.00 E-value=1 Score=42.78 Aligned_cols=83 Identities=11% Similarity=0.162 Sum_probs=53.3
Q ss_pred cccccccccccccCC----cceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCc--cEEEEEEechhhhhhhhHh
Q 006973 292 FNFVPIDELGRYVNG----TELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETK--RTVTVSLWNELATNVGQEL 365 (623)
Q Consensus 292 ~~f~~i~di~~~~~~----~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg--~~I~vtLWg~~A~~~~~~~ 365 (623)
..|++|++|...+.. ....=++|+|.+-++... + .+|+.+ --..|.|..+ ..|.+-|+|+-..++ |
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~--~-~~gk~y--~~w~l~DL~~~~~~V~lfLFg~a~~~~---~ 107 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQS--S-NNGKTF--SIWRLNDLKDLDKYISLFLFGDVHKEH---W 107 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC----------CC--EEEEEECSSSTTCCEEEEECHHHHHHH---T
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccC--c-CCCCeE--EEEEEEecCCCCcEEEEEEechHHHHh---c
Confidence 468899998653211 123446799999988764 2 236544 3466666665 579999999877664 3
Q ss_pred hhcCCCCcEEEEEeEEeee
Q 006973 366 LDNADKSPIVAIKSLKVGD 384 (623)
Q Consensus 366 ~~~~~~~~Vv~i~~~kV~~ 384 (623)
. ...|.||||-+..+-.
T Consensus 108 k--~~~G~ViaiLNP~i~~ 124 (200)
T 3ebe_A 108 K--TDQGTVIGLLNANPMK 124 (200)
T ss_dssp T--CCTTEEEEEESCEECC
T ss_pred C--cCCceEEEEECCEEcc
Confidence 2 5679999998877653
No 55
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=85.21 E-value=0.33 Score=38.20 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=25.1
Q ss_pred cccccccc-ceecCCCCeeecCcCCCCccccceeE
Q 006973 483 RACKTCNK-KVTDALGSGYWCEGCQKNDEECSLRY 516 (623)
Q Consensus 483 ~aC~~C~K-Kv~~~~~~~~~C~kC~~~~~~~~~ry 516 (623)
.-||-|+| +|.....|.|.|.+|++.+.--.|.+
T Consensus 28 y~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~ 62 (73)
T 1ffk_W 28 YKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTP 62 (73)
T ss_pred ccCCCCCCceeEEEEeEEEECCCCCcEEECCCccc
Confidence 45999998 66655578999999998865444443
No 56
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=84.87 E-value=1.9 Score=39.11 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=51.9
Q ss_pred CCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEE-eC------CC-----CeEEEEEechHHHHHHhhcccCcEEEE
Q 006973 181 NPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT-DE------DG-----TQIQATMFNEAARKFYDRFQLGKVYYI 248 (623)
Q Consensus 181 ~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~-D~------~G-----~~I~at~~~~~~~kf~~~l~eG~vy~i 248 (623)
-|..++..|.|||.+--++|...+ | ..+.+|.|+ +. +| +-|++++|+..++.....|+.|+-+.|
T Consensus 13 ~~~~N~V~LiGrL~~DPelr~t~~--G-~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V 89 (153)
T 1z9f_A 13 MSFFNKIILIGRLVRDPEERYTLS--G-TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLV 89 (153)
T ss_dssp CSCCCCEEEEEEESSCCEEEECC-----CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEE
T ss_pred ccceeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEE
Confidence 355678999999999888887643 2 246666654 22 23 249999999999999999999999999
Q ss_pred eeeEEEe
Q 006973 249 SRGTLRV 255 (623)
Q Consensus 249 s~~~V~~ 255 (623)
.+ +++.
T Consensus 90 eG-rL~~ 95 (153)
T 1z9f_A 90 EG-EMRM 95 (153)
T ss_dssp EE-EEEE
T ss_pred EE-EEEe
Confidence 85 4433
No 57
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=84.67 E-value=0.29 Score=41.80 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=21.9
Q ss_pred cccccccc-ceecCCCCeeecCcCCCCcc
Q 006973 483 RACKTCNK-KVTDALGSGYWCEGCQKNDE 510 (623)
Q Consensus 483 ~aC~~C~K-Kv~~~~~~~~~C~kC~~~~~ 510 (623)
.-||.|+| +|.....|.|.|.+|++.+.
T Consensus 61 ytCPfCGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 61 HACPNCGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred CcCCCCCCceeEecCceeEECCCCCCEEE
Confidence 35999998 56555578999999998754
No 58
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=84.34 E-value=5.9 Score=43.37 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=69.4
Q ss_pred cCeeeccccCCC--CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEech-----HHHHHHhhcccCc
Q 006973 172 RRVHPLVSLNPY--QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNE-----AARKFYDRFQLGK 244 (623)
Q Consensus 172 ~~~~~I~~L~p~--~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~-----~~~kf~~~l~eG~ 244 (623)
...+.|.+|.+. ....+|+|||.++ |. .|++.=++|.|.+| .|++.+..+ ..-++...|..|+
T Consensus 48 ~~~~~i~~l~~~~~g~~V~v~Gwv~~~---R~------~gkl~Fi~LrD~~g-~iQ~v~~~~~~~~~~~~~~~~~l~~es 117 (548)
T 3i7f_A 48 LKYTEIEELVPAMAEKTVTIRARVQAV---RG------KGNMVFLFLRKGIY-TCQALVMKSETISKEFVQFCQKISAES 117 (548)
T ss_dssp CCBCCGGGCSGGGTTCEEEEEEEEEEE---EE------CSSEEEEEEEETTE-EEEEEEECSSSSCHHHHHHHHTCCTTE
T ss_pred CceEEhhhcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCe-eEEEEEECCCccCHHHHHHHhCCCCCC
Confidence 456889999753 3478999999773 32 34666678999999 899999751 3345667799999
Q ss_pred EEEEeeeEEEecCCCccccCCceEEEEccCcEEEEc
Q 006973 245 VYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 245 vy~is~~~V~~a~~~~~~~~~~yei~f~~~T~I~~~ 280 (623)
++.+.+.-++...+.-+.....+||....-..+..+
T Consensus 118 ~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 118 ICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp EEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECC
T ss_pred EEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecC
Confidence 999996544433222123357899998876666655
No 59
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=84.30 E-value=2.5 Score=37.39 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCeEEEEEEEeeccccccccCCCcccEEEEEEE-----eCCCC------eEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 185 GNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT-----DEDGT------QIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 185 ~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~-----D~~G~------~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
++..+.||+++--++|...+ | ..+.+|.|+ ++.|. .|+|++|+..++...+.|..|+-++|.+.
T Consensus 20 NkViLiGrL~~DPElRyTps--G-~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGr 94 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGF 94 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTT--C-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEE
T ss_pred eEEEEEEEECcCCceEECCC--C-CEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEE
Confidence 78999999999999997643 3 246666653 33452 39999999999999999999999999965
No 60
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=83.42 E-value=0.36 Score=39.05 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=20.7
Q ss_pred cccccccce-ecCCCCeeecCcCCCCcc
Q 006973 484 ACKTCNKKV-TDALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~KKv-~~~~~~~~~C~kC~~~~~ 510 (623)
.||.|++.. .....|.|.|+.|+..+.
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCCCCCCcceeccCCCeEECCCCCCEec
Confidence 699999844 344468999999998753
No 61
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=83.31 E-value=5.2 Score=33.93 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=52.4
Q ss_pred CCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeC------CCCeEEEEEechHHHHHHhhcccCcEEEEeeeEEE
Q 006973 183 YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDE------DGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLR 254 (623)
Q Consensus 183 ~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~------~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~ 254 (623)
.++...+.||+++--++|...+ |...+.+|.|+=. .-+-|++++|+..|+.....|+.|+-+.|.+ +++
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~--g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeG-rL~ 84 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQD--NQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEG-RLR 84 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTT--SSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEE-EEE
T ss_pred ccceEEEEEEECCCCEEEEeCC--CCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEE-EEE
Confidence 4567889999999999987653 2125667766432 2235999999999999999999999999975 343
No 62
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=83.16 E-value=0.49 Score=37.02 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=22.7
Q ss_pred ccccccccc-eecCCCCeeecCcCCCCccccc
Q 006973 483 RACKTCNKK-VTDALGSGYWCEGCQKNDEECS 513 (623)
Q Consensus 483 ~aC~~C~KK-v~~~~~~~~~C~kC~~~~~~~~ 513 (623)
.-||.|+|. |.....|.|.|.+|++.+.--.
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGA 58 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGA 58 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSCCCCCCSS
T ss_pred ccCCCCCCceeEecCCCeEECCCCCCEEeCCc
Confidence 359999865 4444578999999998875433
No 63
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=82.08 E-value=5.9 Score=42.84 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=64.5
Q ss_pred CeeeccccCCC---CCCeEEEEEEEeeccccccccCCCcccE-EEEEEEeCCCCeEEEEEech-------HHHHHHhhcc
Q 006973 173 RVHPLVSLNPY---QGNWTIKVRVTSKGNMRTYKNARGEGCV-FNVELTDEDGTQIQATMFNE-------AARKFYDRFQ 241 (623)
Q Consensus 173 ~~~~I~~L~p~---~~~w~I~~RV~~K~~~r~~~~~~g~g~~-f~~~L~D~~G~~I~at~~~~-------~~~kf~~~l~ 241 (623)
+.+.|.+|... ....+|.|||.++ |. .|++ .=++|.|.+| .|++++-.+ ..-++...|.
T Consensus 22 ~~~~~~~l~~~~~~g~~V~v~GwV~~~---R~------~g~~l~Fi~LrD~~g-~iQvv~~~~~~~~~~~~~~~~~~~l~ 91 (487)
T 1eov_A 22 KRVKFVDLDEAKDSDKEVLFRARVHNT---RQ------QGATLAFLTLRQQAS-LIQGLVKANKEGTISKNMVKWAGSLN 91 (487)
T ss_dssp CCCCGGGCCTTTTTTCEEEEEEEEEEE---EE------CSSSEEEEEEEETTE-EEEEEEECCSSSSSCHHHHHHHTTCC
T ss_pred ceeEHHHhcccccCCCEEEEEEEEEEe---ec------cCCccEEEEEEECCc-cEEEEEeccccccccHHHHHHHhcCC
Confidence 34667887653 3468999999874 33 3454 4568999999 899998543 2234456799
Q ss_pred cCcEEEEeeeEEEecCCCccccCCceEEEEccCcEEEEc
Q 006973 242 LGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 242 eG~vy~is~~~V~~a~~~~~~~~~~yei~f~~~T~I~~~ 280 (623)
.|+++.+.+.-++...+.-+.....+||....-..+.++
T Consensus 92 ~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 92 LESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp TTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 999999997654443221112235688888766666655
No 64
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=81.64 E-value=3.8 Score=36.65 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=50.3
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeC-------CC------CeEEEEEechHHHHHHhhcccCcEEEEee
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDE-------DG------TQIQATMFNEAARKFYDRFQLGKVYYISR 250 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~-------~G------~~I~at~~~~~~~kf~~~l~eG~vy~is~ 250 (623)
+++.+|.+||.+--++|...+ | ..+.+|.|+=. +| +-|++++|+..++.+...|+.|+.+.|.+
T Consensus 5 mN~v~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EEEEEEEEEESSCCEEECCSS--S-CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEECCC--C-CEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence 467889999999888887643 2 24667766421 13 25999999999999999999999999985
Q ss_pred e
Q 006973 251 G 251 (623)
Q Consensus 251 ~ 251 (623)
.
T Consensus 82 ~ 82 (145)
T 1qvc_A 82 Q 82 (145)
T ss_dssp E
T ss_pred E
Confidence 3
No 65
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=81.53 E-value=4.1 Score=37.43 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=49.2
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEEe------C-CC-------CeEEEEEechHHHHHHhhcccCcEEEEe
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTD------E-DG-------TQIQATMFNEAARKFYDRFQLGKVYYIS 249 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D------~-~G-------~~I~at~~~~~~~kf~~~l~eG~vy~is 249 (623)
.++.+|.+||++--++|...+ | ..+.+|.|+= . +| +-|++++|+.+++.+...|+.|+.++|.
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~--G-~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 80 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSS--G-AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVT 80 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTT--S-CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEE
Confidence 567899999999888887653 2 2466666641 1 12 2599999999999999999999999998
Q ss_pred e
Q 006973 250 R 250 (623)
Q Consensus 250 ~ 250 (623)
.
T Consensus 81 G 81 (168)
T 3afp_A 81 G 81 (168)
T ss_dssp E
T ss_pred E
Confidence 5
No 66
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=81.20 E-value=3.2 Score=37.74 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=50.5
Q ss_pred CCCCeEEEEEEEeeccccccccCCCcccEEEEEE------EeC-CCC------eEEEEEechHHHHHHhhcccCcEEEEe
Q 006973 183 YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVEL------TDE-DGT------QIQATMFNEAARKFYDRFQLGKVYYIS 249 (623)
Q Consensus 183 ~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L------~D~-~G~------~I~at~~~~~~~kf~~~l~eG~vy~is 249 (623)
.+++.+|.|||.+.-++|...+ | ..+.+|.| .|+ .|. -|++++|+.+++.+...|+.|+.+.|.
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPN--G-NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTT--C-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 4578999999999888887653 2 14555544 344 453 379999999999999999999999998
Q ss_pred ee
Q 006973 250 RG 251 (623)
Q Consensus 250 ~~ 251 (623)
+.
T Consensus 84 G~ 85 (158)
T 3tqy_A 84 GS 85 (158)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 67
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.40 E-value=0.48 Score=38.11 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=21.7
Q ss_pred ccccccccc-eecCCCCeeecCcCCCCccc
Q 006973 483 RACKTCNKK-VTDALGSGYWCEGCQKNDEE 511 (623)
Q Consensus 483 ~aC~~C~KK-v~~~~~~~~~C~kC~~~~~~ 511 (623)
.-||.|+|. |.....|.|.|.+|++.+.-
T Consensus 36 y~CpfCGk~~vkR~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTGIWQCQKCGATFAG 65 (83)
T ss_dssp BCCSSSCSSCEEEEETTEEEETTTCCEEEC
T ss_pred cCCCCCCCceeEecCcCeEEcCCCCCEEeC
Confidence 359999875 44445789999999987643
No 68
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=78.47 E-value=5.1 Score=34.74 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=48.8
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eC-CCC------eEEEEEec-hHHHHHHhhcccCcEEEEe
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DE-DGT------QIQATMFN-EAARKFYDRFQLGKVYYIS 249 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~-~G~------~I~at~~~-~~~~kf~~~l~eG~vy~is 249 (623)
.++.+|.||+.+--++|...+ | ..+.+|.|+ |. +|. -+++++|+ ..++.+...|+.|+.+.+.
T Consensus 6 ~N~v~l~Grl~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~ 82 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIKILNG--G-DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEEECSCCEEEECTT--S-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred ceEEEEEEEECCCcEEEECCC--C-CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEE
Confidence 467899999999888887653 2 145555543 32 242 39999999 8999999999999999998
Q ss_pred e
Q 006973 250 R 250 (623)
Q Consensus 250 ~ 250 (623)
+
T Consensus 83 G 83 (124)
T 3ulp_A 83 G 83 (124)
T ss_dssp E
T ss_pred E
Confidence 5
No 69
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=78.41 E-value=4.9 Score=39.92 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=49.7
Q ss_pred EEEEEEeCCC-cEEEEEehHhHHHHhCCCHHHHHHHHhhcCCchhHHHHHHHhcCceEEEEEEEEeeecCceeeeEEEEE
Q 006973 518 MVARVCDGSG-EAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVR 596 (623)
Q Consensus 518 l~~~i~D~Tg-~~~~~~F~~~ae~llG~sA~el~~~~~~~~~~~~~~~~l~~~~~~~~~f~v~~k~~~y~~~~r~~~~v~ 596 (623)
+.+.|.|.|| ++.+.+|.+..+. ..+. ..+. .+ -.++|..+...|++. ..+.+.
T Consensus 90 ~~~~L~D~TG~~I~~k~W~~~~~~-------------~~~~--~~~~------~G--~yVrV~G~v~~f~g~--~qi~i~ 144 (270)
T 2pi2_A 90 IVYKIDDMTAAPMDVRQWVDTDDT-------------SSEN--TVVP------PE--TYVKVAGHLRSFQNK--KSLVAF 144 (270)
T ss_dssp EEEEEECSSSSCEEEEEECC--------------------C--CCCC------TT--CEEEEEEEEEEETTE--EEEEEE
T ss_pred EEEEEECCCCCEEEEEEEcCcCcc-------------cchh--hcCC------CC--CEEEEEEEEEecCCe--eEEEEE
Confidence 4678999999 8999999864320 0000 0110 11 256777788889985 456666
Q ss_pred Eeecc-CHHHHHHHHHHHHHhhh
Q 006973 597 AVAPV-DFAAESKFLLEEISKKV 618 (623)
Q Consensus 597 ~~~~v-d~~~e~~~Ll~~i~~~~ 618 (623)
++.|+ |+.+...++|+.|...+
T Consensus 145 ~ir~v~d~nEi~~H~Le~i~~hl 167 (270)
T 2pi2_A 145 KIMPLEDMNEFTTHILEVINAHM 167 (270)
T ss_dssp EEEECSCTHHHHHHHHHHHHHHH
T ss_pred EEEecCCHhHHHHHHHHHHHHHH
Confidence 77777 58888899999997543
No 70
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.25 E-value=0.82 Score=33.27 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=20.2
Q ss_pred eccccccccceecCCCCeeecCcCCCCc
Q 006973 482 YRACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
..-||.|+..+. .+.|.|.+|+.+.
T Consensus 14 k~iCpkC~a~~~---~gaw~CrKCG~~~ 38 (51)
T 3j21_g 14 KYVCLRCGATNP---WGAKKCRKCGYKR 38 (51)
T ss_dssp EEECTTTCCEEC---TTCSSCSSSSSCC
T ss_pred CccCCCCCCcCC---CCceecCCCCCcc
Confidence 556999999843 5899999999763
No 71
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=77.54 E-value=2 Score=40.04 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=49.0
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eCC-CC------eEEEEEechHHHHHHhhcccCcEEEEee
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DED-GT------QIQATMFNEAARKFYDRFQLGKVYYISR 250 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~~-G~------~I~at~~~~~~~kf~~~l~eG~vy~is~ 250 (623)
.++.+|.+||++.-++|...+ | ..+.+|.|+ |.. |. -|++++|+..++.....|+.|+.++|.+
T Consensus 6 ~N~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG 82 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 82 (178)
T ss_dssp EEEEEEEEEESSSCCCCEETT--T-EECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECC
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEE
Confidence 467899999999888887653 2 134444442 222 42 5899999999999999999999999985
Q ss_pred e
Q 006973 251 G 251 (623)
Q Consensus 251 ~ 251 (623)
.
T Consensus 83 r 83 (178)
T 1eqq_A 83 Q 83 (178)
T ss_dssp E
T ss_pred E
Confidence 3
No 72
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=76.63 E-value=0.66 Score=38.03 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=21.3
Q ss_pred cccccccc-eecCCCCeeecCcCCCCccc
Q 006973 484 ACKTCNKK-VTDALGSGYWCEGCQKNDEE 511 (623)
Q Consensus 484 aC~~C~KK-v~~~~~~~~~C~kC~~~~~~ 511 (623)
-||-|+|. |.....|.|.|.+|++.+..
T Consensus 38 ~CpfCgk~~vkR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 38 FCEFCGKFAVKRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp CCTTTCSSCBEEEETTEEECSSSCCEEEC
T ss_pred cCcccCCCeeEecCcceEEcCCCCCEEeC
Confidence 69999875 44344689999999987644
No 73
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=76.62 E-value=3.8 Score=35.89 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=49.5
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eC-CC-------CeEEEEEechHHHHHHhhcccCcEEEEe
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DE-DG-------TQIQATMFNEAARKFYDRFQLGKVYYIS 249 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~-~G-------~~I~at~~~~~~~kf~~~l~eG~vy~is 249 (623)
.++..|.||+.+--++|...+ | .+.+|.|+ |. +| +-+++++|+..++.+...|+.|+-+.+.
T Consensus 15 ~N~V~LiGrL~~dPelr~t~~--G--~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (128)
T 4dam_A 15 EIMICAVGNVATTPVFRDLAN--G--PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQ 90 (128)
T ss_dssp CCEEEEEEEECSCCEEEEETT--E--EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCEEEEcCC--C--CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEE
Confidence 457899999999888887653 3 66666553 32 23 3589999999999999999999999997
Q ss_pred e
Q 006973 250 R 250 (623)
Q Consensus 250 ~ 250 (623)
+
T Consensus 91 G 91 (128)
T 4dam_A 91 G 91 (128)
T ss_dssp E
T ss_pred E
Confidence 5
No 74
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=75.78 E-value=13 Score=39.70 Aligned_cols=99 Identities=18% Similarity=0.078 Sum_probs=64.4
Q ss_pred CeeeccccCCCC-CCeEEEEEEEeeccccccccCCCcc-cEEEEEEEeCCCCeEEEEEechHHHHH--HhhcccCcEEEE
Q 006973 173 RVHPLVSLNPYQ-GNWTIKVRVTSKGNMRTYKNARGEG-CVFNVELTDEDGTQIQATMFNEAARKF--YDRFQLGKVYYI 248 (623)
Q Consensus 173 ~~~~I~~L~p~~-~~w~I~~RV~~K~~~r~~~~~~g~g-~~f~~~L~D~~G~~I~at~~~~~~~kf--~~~l~eG~vy~i 248 (623)
+.+.|++|.... ...+|.|||.++ |. .| ++.=++|.|.+| .|++.+-.+....+ ...|..|+++.+
T Consensus 18 ~~~~i~~~~~~~g~~V~v~Gwv~~~---R~------~Gk~~~Fi~LrD~sg-~iQvv~~~~~~~~~~~~~~l~~g~~V~V 87 (456)
T 3m4p_A 18 IVCNIRDAAGLEGKLVTFKGWAYHI---RK------ARKTLIFVELRDGSG-YCQCVIFGKELCEPEKVKLLTRECSLEI 87 (456)
T ss_dssp CCEECCSTTCCCSSEEEEEEEEEEE---EC------CSSSEEEEEEECSSC-EEEEEEESTTTTCHHHHTTCCTTCEEEE
T ss_pred eEEEhhhhhhcCCCEEEEEEEEEEE---ec------CCCceEEEEEEeCCc-cEEEEEecccchhhHHhhcCCCccEEEE
Confidence 347888886554 468899999774 32 33 355578999999 89999976322222 225899999999
Q ss_pred eeeEEEecCCCcc---ccCCceEEEEccCcEEEEcc
Q 006973 249 SRGTLRVANKQFK---TVQNDYEMNLNENSEVEEAV 281 (623)
Q Consensus 249 s~~~V~~a~~~~~---~~~~~yei~f~~~T~I~~~~ 281 (623)
.+--++...+.-+ .+...+||....-..+..+.
T Consensus 88 ~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 88 TGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp EEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCC
T ss_pred EeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCC
Confidence 8654433222211 12267999888766666653
No 75
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=75.41 E-value=10 Score=33.16 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=45.7
Q ss_pred CceEEEEEeCccc-ceeeccccccccc-cccCccceeeEEEEcceeeeccCCCceEEEEEEeeeeeccccc
Q 006973 39 GNRYMFNASDGKK-RLKAILPSNLSSE-VISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKCEVVSPALE 107 (623)
Q Consensus 39 ~~ryr~~lSDG~~-~~~~mlat~ln~~-v~~~~l~~~siirl~~y~~~~~~~~~~~vlii~~lev~~~~~~ 107 (623)
...+.+.|.||+. .+.+..|..-++. .....++.|+.||+..-.-.. ++ ++.|.+..+..+....|
T Consensus 47 ~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f-~g--~~qi~~~~ir~v~d~Ne 114 (132)
T 3kdf_D 47 PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF-QN--KKSLVAFKIMPLEDMNE 114 (132)
T ss_dssp SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEE-TT--EEEEEEEEEEECSSTHH
T ss_pred CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeE-CC--EEEEEEEEEEEcCCccH
Confidence 3678999999999 8999887654322 234578999999998876553 44 57788888887766543
No 76
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=74.81 E-value=0.77 Score=37.60 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=21.0
Q ss_pred cccccccc-eecCCCCeeecCcCCCCccc
Q 006973 484 ACKTCNKK-VTDALGSGYWCEGCQKNDEE 511 (623)
Q Consensus 484 aC~~C~KK-v~~~~~~~~~C~kC~~~~~~ 511 (623)
-||-|+|. |.....|.|.|.+|++.+..
T Consensus 38 ~CpfCgk~~vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 38 DCSFCGKKTVKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCSSSCSSCCEEEETTEEECTTTCCEEEC
T ss_pred cCCCCCCceeeecccceEEcCCCCCEEeC
Confidence 49999864 44444689999999987644
No 77
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=74.65 E-value=0.69 Score=38.60 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=21.0
Q ss_pred cccccccc-eecCCCCeeecCcCCCCccc
Q 006973 484 ACKTCNKK-VTDALGSGYWCEGCQKNDEE 511 (623)
Q Consensus 484 aC~~C~KK-v~~~~~~~~~C~kC~~~~~~ 511 (623)
-||-|+|. |.....|.|.|.+|++.+..
T Consensus 38 ~CpfCgk~~vKR~a~GIW~C~kCg~~~AG 66 (103)
T 4a17_Y 38 GCPFCGKVAVKRAAVGIWKCKPCKKIIAG 66 (103)
T ss_dssp ECTTTCCEEEEEEETTEEEETTTTEEEEC
T ss_pred CCCCCCCceeeecCcceEEcCCCCCEEeC
Confidence 49999865 44445789999999987644
No 78
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.72 E-value=2.1 Score=30.83 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=21.3
Q ss_pred cccccccc-ceecC-CCCeeecCcCCCCcc
Q 006973 483 RACKTCNK-KVTDA-LGSGYWCEGCQKNDE 510 (623)
Q Consensus 483 ~aC~~C~K-Kv~~~-~~~~~~C~kC~~~~~ 510 (623)
.+||.|+. .+..+ ..+.+.|+.|+..++
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 47999987 66543 357899999998664
No 79
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=72.07 E-value=6.6 Score=39.66 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=49.7
Q ss_pred CCCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eCCCC------eEEEEEechHHHHHHhhcccCcEEEEee
Q 006973 183 YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DEDGT------QIQATMFNEAARKFYDRFQLGKVYYISR 250 (623)
Q Consensus 183 ~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~~G~------~I~at~~~~~~~kf~~~l~eG~vy~is~ 250 (623)
.++...|.|||.+--++|...+ | ..+.+|.|+ |+.|. -|++++|+..++.+.. |+.|+.+.|.+
T Consensus 128 mmN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~G 203 (301)
T 1se8_A 128 AMNEVLVLGNVTRDPEIRYTPA--G-DAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMG 203 (301)
T ss_dssp CEEEEEEEEEECSCCEEEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEE
T ss_pred ceeEEEEEEEECcCCEEEECCC--C-CEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEE
Confidence 3578999999999888887653 2 145555543 44452 4999999999999999 99999999985
Q ss_pred e
Q 006973 251 G 251 (623)
Q Consensus 251 ~ 251 (623)
.
T Consensus 204 r 204 (301)
T 1se8_A 204 R 204 (301)
T ss_dssp E
T ss_pred E
Confidence 3
No 80
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=72.02 E-value=6.5 Score=36.13 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=48.2
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eCC-C------CeEEEEEech-HHHHHHhhcccCcEEEEe
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DED-G------TQIQATMFNE-AARKFYDRFQLGKVYYIS 249 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~~-G------~~I~at~~~~-~~~kf~~~l~eG~vy~is 249 (623)
.++.+|.|||.+.-++|...+ |. .+.+|.|+ |.. | +-|++++|+. .++.+...|+.|+.++|.
T Consensus 23 mNkV~LiGrL~~DPelr~t~~--G~-~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~Ve 99 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTS--GA-EVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIE 99 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTT--SC-EEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCeEEECCC--CC-EEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEE
Confidence 468999999999888887653 21 45555442 221 3 3589999999 999999999999999998
Q ss_pred ee
Q 006973 250 RG 251 (623)
Q Consensus 250 ~~ 251 (623)
+-
T Consensus 100 Gr 101 (169)
T 3lgj_A 100 GK 101 (169)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 81
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=71.43 E-value=11 Score=33.05 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=47.1
Q ss_pred CCCCeEEEEEEEeeccccccccCCCcccEEEEEEE------e------CCCC------eEEEEEech-HHHHHHhhcccC
Q 006973 183 YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------D------EDGT------QIQATMFNE-AARKFYDRFQLG 243 (623)
Q Consensus 183 ~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D------~~G~------~I~at~~~~-~~~kf~~~l~eG 243 (623)
.+++..|.|||.+--.+|...+ | ..+.+|.|+ | ++|+ -+++++|++ .++.+...|+.|
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVEG--K-NPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCTT--S-CCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred cCcEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 4578999999999888887643 2 145555442 2 2232 478889995 999999999999
Q ss_pred cEEEEee
Q 006973 244 KVYYISR 250 (623)
Q Consensus 244 ~vy~is~ 250 (623)
+-+.|.+
T Consensus 90 ~~V~V~G 96 (132)
T 3ull_A 90 SRIYLEG 96 (132)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
No 82
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=71.06 E-value=1.4 Score=34.33 Aligned_cols=28 Identities=11% Similarity=0.225 Sum_probs=22.4
Q ss_pred eccccccccceecC-CCCeeecCcCCCCc
Q 006973 482 YRACKTCNKKVTDA-LGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~~~-~~~~~~C~kC~~~~ 509 (623)
..+||.|+..+... ..+...|+.|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 57999999998654 25788999998765
No 83
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=70.97 E-value=1.4 Score=34.23 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=23.2
Q ss_pred eEeccccccccceecC-CCCeeecCcCCCCc
Q 006973 480 MWYRACKTCNKKVTDA-LGSGYWCEGCQKND 509 (623)
Q Consensus 480 ~~Y~aC~~C~KKv~~~-~~~~~~C~kC~~~~ 509 (623)
+-..+||.|+..+... ..+...|+.|+..+
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 3467999999988653 25788999998765
No 84
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=70.43 E-value=4.7 Score=36.02 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=38.2
Q ss_pred eEEEEEechHHHHHHhhcccCcEEEEeeeEEEecCCCccccCCceEEEEccCc
Q 006973 223 QIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENS 275 (623)
Q Consensus 223 ~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~~a~~~~~~~~~~yei~f~~~T 275 (623)
.|++++|.+.+.--.+.|++|+++.|.|.++|.... ...|-.+..++
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~------g~LEG~l~~dr 112 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHL------GYLECILHGDS 112 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTT------SCEEEEECCCT
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCC------ceEEEEEcCCC
Confidence 799999999888888889999999999999998752 24666665543
No 85
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=70.40 E-value=1.6 Score=34.01 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=22.1
Q ss_pred eccccccccceecC-CCCeeecCcCCCCc
Q 006973 482 YRACKTCNKKVTDA-LGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~~~-~~~~~~C~kC~~~~ 509 (623)
..+||.|+..+... ..+...|+.|+..+
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 46899999998743 25788999998765
No 86
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=70.37 E-value=1.7 Score=35.83 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=17.6
Q ss_pred ccccccccceecCCCCeeecCcCCCCc
Q 006973 483 RACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
.-||.|+.-+..+ ++.|.|+.|++.+
T Consensus 33 ~~CP~Cq~eL~~~-g~~~hC~~C~~~f 58 (101)
T 2jne_A 33 LHCPQCQHVLDQD-NGHARCRSCGEFI 58 (101)
T ss_dssp CBCSSSCSBEEEE-TTEEEETTTCCEE
T ss_pred ccCccCCCcceec-CCEEECccccchh
Confidence 5677777777765 5566677777643
No 87
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=70.37 E-value=18 Score=32.32 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=48.1
Q ss_pred CCCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eCCC-------CeEEEEEechH-HHHHHhhcccCcEEEE
Q 006973 183 YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DEDG-------TQIQATMFNEA-ARKFYDRFQLGKVYYI 248 (623)
Q Consensus 183 ~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~~G-------~~I~at~~~~~-~~kf~~~l~eG~vy~i 248 (623)
..++.+|.+||.+--+ |.. + | ..+.+|.|+ |.+| +-+++++|+.. ++.+...|+.|+-++|
T Consensus 5 ~~NkV~LiGrLg~DPe-r~t-~--G-~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GFV-Y--E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EES-S--S-SEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred cCcEEEEEEEeccCCE-eee-C--C-cEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 3578999999999877 654 3 2 246666553 2223 36999999997 9999999999999999
Q ss_pred eeeEEEe
Q 006973 249 SRGTLRV 255 (623)
Q Consensus 249 s~~~V~~ 255 (623)
.+ +++.
T Consensus 80 eG-rL~~ 85 (148)
T 3k7u_C 80 NG-RLRL 85 (148)
T ss_dssp EE-EEEE
T ss_pred EE-EEEe
Confidence 74 4433
No 88
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=69.89 E-value=1.5 Score=33.99 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=22.2
Q ss_pred eccccccccceecC-CCCeeecCcCCCCc
Q 006973 482 YRACKTCNKKVTDA-LGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~~~-~~~~~~C~kC~~~~ 509 (623)
..+||.|+..+... ..+...|+.|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 56999999988653 25788999998765
No 89
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=69.24 E-value=8.1 Score=36.26 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=47.6
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eC-CC------CeEEEEEech-HHHHHHhhcccCcEEEEe
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DE-DG------TQIQATMFNE-AARKFYDRFQLGKVYYIS 249 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~-~G------~~I~at~~~~-~~~kf~~~l~eG~vy~is 249 (623)
.++.+|.+||.+--++|...+ | ..+.+|.|+ |. +| +-|++++|++ +++.....|+.|+.++|.
T Consensus 26 mNkV~LiGrLg~DPElR~t~~--G-~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~Ve 102 (193)
T 3pgz_A 26 LNKVILIGNLGADPEIRRLNS--G-DQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEE
Confidence 568999999999888887653 2 146566553 22 24 2389999996 888888899999999997
Q ss_pred e
Q 006973 250 R 250 (623)
Q Consensus 250 ~ 250 (623)
.
T Consensus 103 G 103 (193)
T 3pgz_A 103 G 103 (193)
T ss_dssp E
T ss_pred E
Confidence 4
No 90
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=67.83 E-value=46 Score=27.94 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=40.0
Q ss_pred ceeEEEEEEEEeCCceEEEEccCC-ceeeEEEEEEEeCC------ccEEEEEEechhhhhhhhHhhhcCCCCcEEEEE-e
Q 006973 308 ELVDIIGVVQNVSPTMSIRRKSNN-EMVPKRDITVADET------KRTVTVSLWNELATNVGQELLDNADKSPIVAIK-S 379 (623)
Q Consensus 308 ~~vDVIGvV~~v~~~~~i~~k~~g-~~~~kr~i~l~D~s------g~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~ 379 (623)
..|-++|.+..--+++. +. +| ..+ -.|.|.=.+ -.-++|++||+.|+...+. +..|.-|.+. .
T Consensus 12 ~~v~LiGrL~~DPelR~--t~-~g~~~v--a~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~y----l~KG~~V~VeGr 82 (108)
T 3koj_A 12 NSCILQATVVEAPQLRY--AQ-DNQTPV--AEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDR----CRLNDEVVLEGR 82 (108)
T ss_dssp EEEEEEEEEEEEEEEEE--CT-TSSSEE--EEEEEEECC-----CCEEEEEEEETHHHHHHHHH----CCTTCEEEEEEE
T ss_pred ceEEEEEEECCCCEEEE--eC-CCCEEE--EEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHh----CCCCCEEEEEEE
Confidence 35788888876433322 22 24 333 333333221 1269999999999987654 4556666665 4
Q ss_pred EEeeecc
Q 006973 380 LKVGDFQ 386 (623)
Q Consensus 380 ~kV~~f~ 386 (623)
++...|.
T Consensus 83 L~~r~y~ 89 (108)
T 3koj_A 83 LRINSLL 89 (108)
T ss_dssp EEEEC--
T ss_pred EEeeeEE
Confidence 5555664
No 91
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=67.71 E-value=2.1 Score=31.84 Aligned_cols=27 Identities=19% Similarity=0.518 Sum_probs=22.6
Q ss_pred eccccccccceecCCCCeeecC--cCCCCc
Q 006973 482 YRACKTCNKKVTDALGSGYWCE--GCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~~~~~~~~~C~--kC~~~~ 509 (623)
..+||.|+..+... .+...|. .|+..+
T Consensus 10 iL~CP~c~~~L~~~-~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEER-DAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEE-TTEEEECSSSCCCEE
T ss_pred heeCCCCCCcceec-CCEEEcCCcCCCcEE
Confidence 56999999998776 4889999 898765
No 92
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.37 E-value=2.6 Score=30.51 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=20.1
Q ss_pred eccccccccceec-CCCCeeecCcCCCCc
Q 006973 482 YRACKTCNKKVTD-ALGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~~-~~~~~~~C~kC~~~~ 509 (623)
..-||.|+..+.. ...+.++|.+|+-++
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 5669999984322 236789999999654
No 93
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=66.85 E-value=25 Score=37.35 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=61.5
Q ss_pred eeccccCCC--CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHH----HHHHhhcccCcEEEE
Q 006973 175 HPLVSLNPY--QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAA----RKFYDRFQLGKVYYI 248 (623)
Q Consensus 175 ~~I~~L~p~--~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~----~kf~~~l~eG~vy~i 248 (623)
+.+.+|+.. ....+|.|||.++ |. .|++.=++|.|.+| .|++++-.+.+ -+....|..|+++.+
T Consensus 5 ~~~~~l~~~~~g~~V~v~Gwv~~~---R~------~g~~~Fi~LrD~~g-~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V 74 (438)
T 3nem_A 5 HYSSEITEELNGQKVKVAGWVWEV---KD------LGGIKFLWIRDRDG-IVQITAPKKKVDPELFKLIPKLRSEDVVAV 74 (438)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEE---EE------ETTEEEEEEEETTE-EEEEEEETTTSCHHHHHHGGGCCTTCEEEE
T ss_pred EEHHHcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCe-eEEEEEeCCcCCHHHHHHHhcCCCCCEEEE
Confidence 455666553 3478899999874 32 34666678999999 79999976532 223446999999999
Q ss_pred eeeEEEecCCCccccCCceEEEEccCcEEEEc
Q 006973 249 SRGTLRVANKQFKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 249 s~~~V~~a~~~~~~~~~~yei~f~~~T~I~~~ 280 (623)
.+. |..... .+..+||....-..+.++
T Consensus 75 ~G~-v~~~~~----~~~~~el~~~~i~vl~~~ 101 (438)
T 3nem_A 75 EGV-VNFTPK----AKLGFEILPEKIVVLNRA 101 (438)
T ss_dssp EEE-EEECTT----STTSEEEEEEEEEEEECB
T ss_pred EEE-EEeCCC----CCCcEEEEEEEEEEEecC
Confidence 865 433322 235789988776666555
No 94
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=66.21 E-value=22 Score=37.74 Aligned_cols=90 Identities=9% Similarity=0.026 Sum_probs=60.6
Q ss_pred eccccCCC--CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHH----HHHHhhcccCcEEEEe
Q 006973 176 PLVSLNPY--QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAA----RKFYDRFQLGKVYYIS 249 (623)
Q Consensus 176 ~I~~L~p~--~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~----~kf~~~l~eG~vy~is 249 (623)
.+.+|... ....+|.|||.++ |. .|++.=++|.|.+| .|++++-.+.+ -+....|..|+++.+.
T Consensus 6 ~~~~l~~~~~~~~V~v~G~v~~~---R~------~g~~~F~~lrD~~g-~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~ 75 (434)
T 1x54_A 6 YCQEVKPELDGKKVRLAGWVYTN---MR------VGKKIFLWIRDSTG-IVQAVVAKNVVGEETFEKAKKLGRESSVIVE 75 (434)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EE------ETTEEEEEEEETTE-EEEEEECHHHHCHHHHHHHHTCCTTCEEEEE
T ss_pred EHHHhhHHhCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCE-EEEEEEECCcCCHHHHHHHhcCCCCCEEEEE
Confidence 45666432 3468999999874 33 24666678999999 79999965432 1223569999999998
Q ss_pred eeEEEecCCCccccCCceEEEEccCcEEEEc
Q 006973 250 RGTLRVANKQFKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 250 ~~~V~~a~~~~~~~~~~yei~f~~~T~I~~~ 280 (623)
+.-++... ....+||....-..+.++
T Consensus 76 G~v~~~~~-----~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 76 GIVKADER-----APGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEEECTT-----SGGGEEEEEEEEEEEECC
T ss_pred EEEEecCC-----CCccEEEEEeEEEEeecC
Confidence 75443321 235789988876666655
No 95
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=65.70 E-value=1.6 Score=33.21 Aligned_cols=23 Identities=39% Similarity=0.797 Sum_probs=17.9
Q ss_pred ccccccccceecCCCCeeecCcCCCCc
Q 006973 483 RACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
..|..|+|||.-. .|.| .|+..+
T Consensus 16 ~rC~~C~kkvgl~---~f~C-rCg~~F 38 (64)
T 1wg2_A 16 NRCFSCNKKVGVM---GFKC-KCGSTF 38 (64)
T ss_dssp CSCTTTCCCCTTS---CEEC-TTSCEE
T ss_pred CcChhhCCccccc---CeEe-ecCCEe
Confidence 5688999998643 5899 898765
No 96
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=65.44 E-value=14 Score=43.62 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=56.8
Q ss_pred CeeeccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEech--HHHHHHhhcccCcEEEEee
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNE--AARKFYDRFQLGKVYYISR 250 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~--~~~kf~~~l~eG~vy~is~ 250 (623)
.++||+++.....+.+|.|.|... +.|+.++. ..++.+.+.|-++ .|.+..|.. ....+.+.|++|+|+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~~---~~~~~~~~td~~~-~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g 80 (1041)
T 3f2b_A 6 PVRRLETIVEEERRVVVQGYVFDA-EVSELKSG---RTLLTMKITDYTN-SILVKMFSRDKEDAELMSGVKKGMWVKVRG 80 (1041)
T ss_dssp -CBCGGGCCSCEEEEEEEEEEEEE-EEEECTTS---CEEEEEEEECSSC-EEEEEEECSSHHHHHHHHTCCTTCEEEEEE
T ss_pred CcccHHHhhcccceEEEEEEEEEE-EEEEccCC---CEEEEEEEEeCCC-CEEEEEeecccchHHHHhcCCCCCEEEEEE
Confidence 468999999998899999998874 46665442 2588999999988 799988843 3445667799999999874
No 97
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=65.23 E-value=29 Score=38.35 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=59.0
Q ss_pred CCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHH--HHHhhcccCcEEEEeeeEEEecCCCccc
Q 006973 185 GNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAR--KFYDRFQLGKVYYISRGTLRVANKQFKT 262 (623)
Q Consensus 185 ~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~--kf~~~l~eG~vy~is~~~V~~a~~~~~~ 262 (623)
...+|.|||.++ |. .|++.=++|.|.+| .|++++-.+..+ +....|..|+++.+.+.-++...+..++
T Consensus 16 ~~V~l~GwV~~~---R~------~G~~~Fi~LrD~~g-~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~ 85 (585)
T 1c0a_A 16 QQVTLCGWVNRR---RD------LGSLIFIDMRDREG-IVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINR 85 (585)
T ss_dssp CEEEEEEEEEEE---EE------CSSCEEEEEEETTE-EEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCT
T ss_pred CEEEEEEEEEEE---ec------CCCcEEEEEEECCe-eEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccc
Confidence 468999999874 32 23566688999999 899999654322 2234689999999997655443322222
Q ss_pred --cCCceEEEEccCcEEEEcc
Q 006973 263 --VQNDYEMNLNENSEVEEAV 281 (623)
Q Consensus 263 --~~~~yei~f~~~T~I~~~~ 281 (623)
....+||..+.-..+.++.
T Consensus 86 ~~~~geiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 86 DMATGEIEVLASSLTIINRAD 106 (585)
T ss_dssp TSTTTTEEEEEEEEEEEECCC
T ss_pred cCCCccEEEEEeEEEEEeccC
Confidence 3467999988776666653
No 98
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=65.08 E-value=89 Score=29.01 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=113.8
Q ss_pred EEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeEEEecCCCccccCCceE
Q 006973 189 IKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDYE 268 (623)
Q Consensus 189 I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~~a~~~~~~~~~~ye 268 (623)
..|.|+.-.+.-+|.... ..++|+-+++-++. -.++-+|+-. +.+.|..++++.||++. .+.--
T Consensus 12 ~~VmVLkaTepF~Ye~~E-~k~MFHATVATetq-fF~VKVfn~~---LKeKF~pk~iI~ISdY~-----------~~~gf 75 (204)
T 3rlo_A 12 KEVMVLNATESFVYEPKE-QKKMFHATVATENE-VFRVKVFNID---LKEKFTPKKIIAIANYV-----------CRNGF 75 (204)
T ss_dssp EEEEEEEECCCEEEETTT-TEEEEEEEEECSSC-EEEEEECCGG---GTTTTCTTCEEEEESCE-----------EETTE
T ss_pred eEEEEEeccCCceecccc-cceEEEEEEeeccc-eEEEEEecch---hhhhcCCCcEEEEEecc-----------cccce
Confidence 456777777777787655 35699999999988 8999999964 46688999999999863 23345
Q ss_pred EEEccCcEEEEccCc-CCCCCCCcc----ccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEe
Q 006973 269 MNLNENSEVEEAVNE-TAFIPQTKF----NFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVAD 343 (623)
Q Consensus 269 i~f~~~T~I~~~~d~-~~~iP~~~~----~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D 343 (623)
|..++.|.|.++..+ .-.+|.... .=-+|++|.. ...+.+|+=+=.|... +.+ + ......|.|
T Consensus 76 LEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~-q~~Gt~V~G~F~v~KK------~v~---~--~~~~YeI~D 143 (204)
T 3rlo_A 76 LEVYPFTLVADVNADRNMEIPKGLIRSASVTPKINQLCS-QTKGSFVNGVFEVHKK------NVR---G--EFTYYEIQD 143 (204)
T ss_dssp EEECTTSEEEECCSSSCCCCCHHHHHHHHCCCCHHHHHT-CSSCEEEEEEEEEEEE------EEE---T--TEEEEEEEE
T ss_pred EEEecccEEEEccCCceeEcCHHHHHhcccCcchhhhhc-CCCCCEEeEEEEEEEE------Eec---c--ceEEEEEec
Confidence 667888999987533 234564211 1236777765 3456666533333221 111 1 244568899
Q ss_pred CCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeec-cc-eeeecccceEEE
Q 006973 344 ETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDF-QG-ISLSTLGRSTVL 399 (623)
Q Consensus 344 ~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f-~G-~~Ls~~~~S~i~ 399 (623)
+|| .|+|...|....- .+.+|.=+-+....+..- ++ ..|.+...|-|.
T Consensus 144 nTG-~MeVvv~G~~~~i-------~CEeGDKLrL~cFeL~~~~~~~~qL~s~~HSfik 193 (204)
T 3rlo_A 144 NTG-KMEVVVHGRLTTI-------NCEEGDKLKLTCFELAPKSGNTGELRSVIHSHIK 193 (204)
T ss_dssp TTE-EEEEEECGGGGGC-------CCCTTCEEEEEEEEEECCTTTTCEEEEEEEEEEE
T ss_pred CCC-cEEEEEeccCccc-------ccCCCCeeEEEEEEEecccCCceeEEEecceeEE
Confidence 999 7999999987654 256677666666666542 22 356666666443
No 99
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=64.93 E-value=2.1 Score=32.99 Aligned_cols=28 Identities=11% Similarity=-0.132 Sum_probs=22.1
Q ss_pred eccccccccceecC-CCCeeecCcCCCCc
Q 006973 482 YRACKTCNKKVTDA-LGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~~~-~~~~~~C~kC~~~~ 509 (623)
..+||.|+..+... ..|...|+.|+..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 56999999988653 35788999998765
No 100
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=63.92 E-value=19 Score=38.12 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=60.1
Q ss_pred eccccCCC--CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEech--HHHHHHhhcccCcEEEEeee
Q 006973 176 PLVSLNPY--QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNE--AARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 176 ~I~~L~p~--~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~--~~~kf~~~l~eG~vy~is~~ 251 (623)
.+.+|... ....+|.|||.++ |. .|++.=++|.|.+| .|++++-.+ ..+. ...|..|+++.+.+.
T Consensus 6 ~~~~l~~~~~~~~V~v~Gwv~~~---R~------~g~~~F~~lrD~~g-~iQ~v~~~~~~~~~~-~~~l~~~~~v~v~G~ 74 (429)
T 1wyd_A 6 FIADVTPEYDGKEVIWAGWVHLL---RD------LGGKKFIILRDKTG-LGQVVVDKNSSAFGI-SQELTQESVIQVRGI 74 (429)
T ss_dssp CTTTCCGGGTTCEEEEEEEEEEE---EE------ETTEEEEEEEETTE-EEEEEECTTSTTHHH-HTTCCTTCEEEEEEE
T ss_pred EHHHhhHHhCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCe-eEEEEEeCChHHHHH-HHhCCCCCEEEEEEE
Confidence 35555432 3468999999874 33 24666678999999 799999653 2222 256999999999875
Q ss_pred EEEecCCCccccCCceEEEEccCcEEEEc
Q 006973 252 TLRVANKQFKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 252 ~V~~a~~~~~~~~~~yei~f~~~T~I~~~ 280 (623)
-++.. . ....+||..+.-..+.++
T Consensus 75 v~~~~-~----~~~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 75 VKADK-R----APRGIELHAEEITLLSKA 98 (429)
T ss_dssp EEECS-S----SGGGEEEEEEEEEEEECC
T ss_pred EEecC-C----CCccEEEEEeEEEEeccC
Confidence 44332 1 235799988876666655
No 101
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=63.63 E-value=24 Score=38.41 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=55.8
Q ss_pred CCeEEEEEEEeeccccccccCCCcc-cEEEEEEEeCCCCeEEEEEechHH------HHHHhhcccCcEEEEeeeEEEecC
Q 006973 185 GNWTIKVRVTSKGNMRTYKNARGEG-CVFNVELTDEDGTQIQATMFNEAA------RKFYDRFQLGKVYYISRGTLRVAN 257 (623)
Q Consensus 185 ~~w~I~~RV~~K~~~r~~~~~~g~g-~~f~~~L~D~~G~~I~at~~~~~~------~kf~~~l~eG~vy~is~~~V~~a~ 257 (623)
...+|.|||.++ |. .| ++.=++|.|.+| .|++.+..+.+ +++...|..|+++.+.+.-++..
T Consensus 56 ~~V~v~Grv~~~---R~------~gkk~~F~~LrD~sg-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~- 124 (521)
T 3bju_A 56 ITLKVAGRIHAK---RA------SGGKLIFYDLRGEGV-KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK- 124 (521)
T ss_dssp CCEEEEEEEEEE---EE------SSSSEEEEEEEETTE-EEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-
T ss_pred cEEEEEEEEEEE---ec------CCCCcEEEEEEECCE-EEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-
Confidence 468999999874 32 34 555578999998 89999976432 33445689999999987644332
Q ss_pred CCccccCCceEEEEccCcEEEEc
Q 006973 258 KQFKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 258 ~~~~~~~~~yei~f~~~T~I~~~ 280 (623)
...++|..+....+.++
T Consensus 125 ------~ge~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 125 ------KGELSIIPYEITLLSPC 141 (521)
T ss_dssp ------TCCEEEEEEEEEEEECC
T ss_pred ------CCCEEEEEeEEEEeecC
Confidence 24688888776666655
No 102
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.41 E-value=1.9 Score=33.82 Aligned_cols=29 Identities=38% Similarity=0.738 Sum_probs=20.5
Q ss_pred ccccccccceecCCCCeeecCcCCCCccccceeE
Q 006973 483 RACKTCNKKVTDALGSGYWCEGCQKNDEECSLRY 516 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~~~~~C~kC~~~~~~~~~ry 516 (623)
..|..|+|||.-. .|.| +|+..+= -.+||
T Consensus 26 ~RC~~C~kkvgL~---~f~C-rCg~~FC-s~HRy 54 (74)
T 1wfp_A 26 TRCLSCNKKVGVT---GFKC-RCGSTFC-GTHRY 54 (74)
T ss_dssp CBCSSSCCBCTTT---CEEC-TTSCEEC-TTTCS
T ss_pred ccchhhcCccccc---ceEe-ccCCEec-cccCC
Confidence 5688999998753 5899 7987651 24555
No 103
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=63.39 E-value=3 Score=33.39 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=4.7
Q ss_pred ccccccccee
Q 006973 484 ACKTCNKKVT 493 (623)
Q Consensus 484 aC~~C~KKv~ 493 (623)
.|..|++-+.
T Consensus 20 ~C~~C~~~~~ 29 (81)
T 2jrp_A 20 HCETCAKDFS 29 (81)
T ss_dssp ECTTTCCEEE
T ss_pred ECccccccCC
Confidence 3555544443
No 104
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=63.15 E-value=2.6 Score=36.60 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=24.1
Q ss_pred eccccccccceecCCCCeeecCcCCCCc
Q 006973 482 YRACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
.|.||.|+.--+-+.+..|-|+-|.-.+
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCeEECCcccccc
Confidence 6999999998877667789999998765
No 105
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=62.76 E-value=51 Score=27.34 Aligned_cols=69 Identities=3% Similarity=-0.027 Sum_probs=38.1
Q ss_pred eEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeC-----Cc------cEEEEEEechhhhhhhhHhhhcCCCCcEEEEE
Q 006973 310 VDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADE-----TK------RTVTVSLWNELATNVGQELLDNADKSPIVAIK 378 (623)
Q Consensus 310 vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~-----sg------~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~ 378 (623)
|-++|.++.--++.. +. +|.. ...|.|.-+ .| ..|.|++||+.|+.... ...|.-|.+.
T Consensus 5 v~L~GrLt~dPelRy--Tp-sG~~--V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-----~~kGs~V~Ve 74 (101)
T 3en2_A 5 LQLVATLVEREVMRY--TP-AGVP--IVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-----IAPGTVLECV 74 (101)
T ss_dssp EEEEEEEEEECCCEE--CT-TCCE--EEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-----SCTTCEEEEE
T ss_pred EEEEEEECcCccEEE--CC-CCCE--EEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-----cCCCCEEEEE
Confidence 567788887766653 22 3543 233333222 22 23899999999997642 3467777776
Q ss_pred e-EEeeeccce
Q 006973 379 S-LKVGDFQGI 388 (623)
Q Consensus 379 ~-~kV~~f~G~ 388 (623)
| .....|+++
T Consensus 75 GrL~trs~~s~ 85 (101)
T 3en2_A 75 GFLARKHRSSK 85 (101)
T ss_dssp EEEEECC----
T ss_pred EEEEeCcCCCC
Confidence 4 344456554
No 106
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=60.54 E-value=13 Score=33.84 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=51.3
Q ss_pred cCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeC-------CC------CeEEEEEechH-HHHHHhhcccCcE
Q 006973 180 LNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDE-------DG------TQIQATMFNEA-ARKFYDRFQLGKV 245 (623)
Q Consensus 180 L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~-------~G------~~I~at~~~~~-~~kf~~~l~eG~v 245 (623)
+....++..+.||+.+--++|... ..+.+|.|+=. .| +-+++++|+.. ++.+...|+.|+-
T Consensus 18 ~a~smNkViLiGrLg~DPElR~t~-----~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~ 92 (164)
T 3k81_C 18 CCKSVNSVTLVGVVHDIQSGFVYE-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNV 92 (164)
T ss_dssp --CCEEEEEEEEEEECCCCEESSS-----CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred HhcCCcEEEEEEEeccCCEEEEcC-----ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCE
Confidence 345567899999999999998754 24555555322 22 34999999999 9999999999999
Q ss_pred EEEeeeEEEe
Q 006973 246 YYISRGTLRV 255 (623)
Q Consensus 246 y~is~~~V~~ 255 (623)
++|.+ +++.
T Consensus 93 V~VeG-rL~t 101 (164)
T 3k81_C 93 VCVNG-RLRL 101 (164)
T ss_dssp EEECC-EEEE
T ss_pred EEEEE-EEEe
Confidence 99974 4433
No 107
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=60.17 E-value=29 Score=36.67 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=57.2
Q ss_pred eccccCC-CCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcc-cCcEEEEeeeEE
Q 006973 176 PLVSLNP-YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQ-LGKVYYISRGTL 253 (623)
Q Consensus 176 ~I~~L~p-~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~-eG~vy~is~~~V 253 (623)
.+.+|.. -....+|.|||.++ |. .|++.=++|.|.+| .|++++-. ..|. .|+++.+.+.-+
T Consensus 4 ~~~~l~~~~~~~V~v~Gwv~~~---R~------~g~~~F~~lrD~~g-~iQ~v~~~-------~~l~~~~~~v~v~G~v~ 66 (422)
T 1n9w_A 4 LVRDLKAHVGQEVELLGFLHWR---RD------LGRIQFLLLRDRSG-VVQVVTGG-------LKLPLPESALRVRGLVV 66 (422)
T ss_dssp CGGGGGGCTTSEEEEEEEEEEE---EE------CSSEEEEEEEETTE-EEEEEEES-------CCCCCTTCEEEEEEEEE
T ss_pred EHHHHHhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCE-EEEEEEEc-------cccCCCCCEEEEEEEEE
Confidence 3455542 23468999999874 32 34666678999999 79999864 5689 999999987544
Q ss_pred EecCCCccccCCceEEEEccCcEEEEc
Q 006973 254 RVANKQFKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 254 ~~a~~~~~~~~~~yei~f~~~T~I~~~ 280 (623)
+... ....+||..+.-..+.++
T Consensus 67 ~~~~-----~~~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 67 ENAK-----APGGLEVQAKEVEVLSPA 88 (422)
T ss_dssp ECTT-----STTSEEEEEEEEEEEECC
T ss_pred ecCC-----CCccEEEEEeEEEEeccC
Confidence 3322 235789988776666554
No 108
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=59.96 E-value=31 Score=36.56 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=57.6
Q ss_pred eccccCCCC-CCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHH-hhcccCcEEEEeeeEE
Q 006973 176 PLVSLNPYQ-GNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFY-DRFQLGKVYYISRGTL 253 (623)
Q Consensus 176 ~I~~L~p~~-~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~-~~l~eG~vy~is~~~V 253 (623)
.|++|.... ...+|.|||.++ |.. | +++.=++|.|.+| .|++++-++..+.|. ..|..|+++.+.+.-+
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~---R~~----G-k~~~Fi~LrD~~g-~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~ 72 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRM---RRQ----G-KSLMFFILRDGTG-FLQVLLMDKLCQTYDALTVNTECTVEIYGAIK 72 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEE---EEC----T-TSEEEEEEECSSC-EEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEE
T ss_pred chhhhhhcCCCEEEEEEEEEEe---ccc----C-CCcEEEEEEECCc-eEEEEECCcchhHHHHhcCCCCCEEEEEEEEE
Confidence 356665433 368999999874 331 1 1355578999999 899999754322221 1589999999987544
Q ss_pred EecCCCccccCCceEEEEccCcEEEE
Q 006973 254 RVANKQFKTVQNDYEMNLNENSEVEE 279 (623)
Q Consensus 254 ~~a~~~~~~~~~~yei~f~~~T~I~~ 279 (623)
+...+ +.....+||....-..+..
T Consensus 73 ~~~~~--~~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 73 EVPEG--KEAPNGHELIADFWKIIGN 96 (435)
T ss_dssp ECC--------TTEEEEEEEEEEEEC
T ss_pred ecCCC--cCCCCcEEEEEEEEEEeec
Confidence 42222 1234678998876665554
No 109
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=59.50 E-value=2.8 Score=41.76 Aligned_cols=25 Identities=28% Similarity=0.735 Sum_probs=19.4
Q ss_pred ccccccccceec---CCCCeeecCcCCC
Q 006973 483 RACKTCNKKVTD---ALGSGYWCEGCQK 507 (623)
Q Consensus 483 ~aC~~C~KKv~~---~~~~~~~C~kC~~ 507 (623)
..|+.|+..+.. .+-++|+|+.|++
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQR 273 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCCC
Confidence 589999987754 2356899999984
No 110
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=58.67 E-value=36 Score=37.55 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=61.3
Q ss_pred eccccCCC--CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechH-HHHHHhhcccCcEEEEeeeE
Q 006973 176 PLVSLNPY--QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA-ARKFYDRFQLGKVYYISRGT 252 (623)
Q Consensus 176 ~I~~L~p~--~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~-~~kf~~~l~eG~vy~is~~~ 252 (623)
.+.+|... ....+|.|||.++ |. .|++.=++|.|.+| .|++++-.+. .-+....|..|+++.+.+.-
T Consensus 6 ~~~~l~~~~~g~~V~l~GwV~~~---R~------~G~~~Fi~LrD~~g-~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v 75 (580)
T 1l0w_A 6 YAGSLRETHVGEEVVLEGWVNRR---RD------LGGLIFLDLRDREG-LVQLVAHPASPAYATAERVRPEWVVRAKGLV 75 (580)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EE------CSSCEEEEEEETTE-EEEEEECTTSTTHHHHTTCCTTCEEEEEEEE
T ss_pred EHHHhHHHhCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCe-eEEEEEeCChhHHHHHhcCCCCcEEEEEEEE
Confidence 34455432 3468999999874 33 23565688999999 8999996542 11233568999999999764
Q ss_pred EEecCCCccccCCceEEEEccCcEEEEcc
Q 006973 253 LRVANKQFKTVQNDYEMNLNENSEVEEAV 281 (623)
Q Consensus 253 V~~a~~~~~~~~~~yei~f~~~T~I~~~~ 281 (623)
++.....-+.....+||..+.-..+.++.
T Consensus 76 ~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 76 RLRPEPNPRLATGRVEVELSALEVLAEAK 104 (580)
T ss_dssp EECSSCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EcCCCcCccCCCccEEEEEeEEEEeccCc
Confidence 44321111123457999888776666553
No 111
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=58.10 E-value=3.5 Score=40.91 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=20.0
Q ss_pred ccccccccceec---CCCCeeecCcCCCC
Q 006973 483 RACKTCNKKVTD---ALGSGYWCEGCQKN 508 (623)
Q Consensus 483 ~aC~~C~KKv~~---~~~~~~~C~kC~~~ 508 (623)
..|+.|+..+.. .+-++|+|+.|++.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~~ 264 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQGE 264 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCCC
Confidence 679999977644 23578999999963
No 112
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=57.02 E-value=3.3 Score=41.19 Aligned_cols=25 Identities=20% Similarity=0.608 Sum_probs=19.4
Q ss_pred ccccccccceecC---CCCeeecCcCCC
Q 006973 483 RACKTCNKKVTDA---LGSGYWCEGCQK 507 (623)
Q Consensus 483 ~aC~~C~KKv~~~---~~~~~~C~kC~~ 507 (623)
..|+.|+..+... +-++|+|+.|++
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 6699999876542 357899999985
No 113
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=57.00 E-value=3.3 Score=41.14 Aligned_cols=25 Identities=24% Similarity=0.861 Sum_probs=19.3
Q ss_pred ccccccccceecC---CCCeeecCcCCC
Q 006973 483 RACKTCNKKVTDA---LGSGYWCEGCQK 507 (623)
Q Consensus 483 ~aC~~C~KKv~~~---~~~~~~C~kC~~ 507 (623)
..|+.|+..+... +-++|+|+.|++
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 268 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQK 268 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 6699999876542 357899999984
No 114
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=56.92 E-value=4.9 Score=29.66 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=20.0
Q ss_pred ecccccccccee-cCCCCeeecCcCCCCc
Q 006973 482 YRACKTCNKKVT-DALGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KKv~-~~~~~~~~C~kC~~~~ 509 (623)
-.-||.|+-.+. ....+.|.|.+|+-+.
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 456999997553 1236799999998653
No 115
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=56.77 E-value=3.4 Score=40.94 Aligned_cols=24 Identities=33% Similarity=1.017 Sum_probs=18.5
Q ss_pred cccccccceecC---CCCeeecCcCCC
Q 006973 484 ACKTCNKKVTDA---LGSGYWCEGCQK 507 (623)
Q Consensus 484 aC~~C~KKv~~~---~~~~~~C~kC~~ 507 (623)
.|+.|+..+... +-++|+|+.|++
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPGCQH 262 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCEeEEEEECCCCeEECCCCCC
Confidence 599999876542 357899999984
No 116
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=56.60 E-value=3.1 Score=32.61 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=17.6
Q ss_pred ccccccccceecCCCCeeecCcCCCCc
Q 006973 483 RACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
..|..|+|||... .|.|. |+..+
T Consensus 26 nRC~~CrKkvgL~---gf~Cr-Cg~~F 48 (74)
T 1wfl_A 26 NRCFMCRKKVGLT---GFDCR-CGNLF 48 (74)
T ss_dssp TBCSSSCCBCGGG---CEECT-TSCEE
T ss_pred CcChhhCCccccc---CeecC-CCCEe
Confidence 4688899998754 48888 88654
No 117
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=56.24 E-value=22 Score=32.42 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=54.6
Q ss_pred CeeeccccCCCCC-CeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeee
Q 006973 173 RVHPLVSLNPYQG-NWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 173 ~~~~I~~L~p~~~-~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~ 251 (623)
+..+|++|.++.+ .-.|.+||+-- ... .+.--|.+.++|++|+..-++++|-. +.+. +.+||.+.|-..
T Consensus 62 ~~~~l~~L~~G~N~g~vv~gKVv~~-----i~~--e~~vP~~f~~vD~~g~c~avsVYNl~-~~~G--~~iGDsV~IpeP 131 (166)
T 2xvs_A 62 ELKPLSTLQPGVNSGAVILGKVVFS-----LTT--EEKVPFTFGLVDSDGPCYAVMVYNIV-QSWG--VLIGDSVAIPEP 131 (166)
T ss_dssp EECCGGGCCSEECTTEEEEEEEEEE-----ECC--TTCCSEEEEEESSSSCCEEEEECCCC-SSCC--CCTTCEEEEESC
T ss_pred eeeeHHHcccccCCCcEEEEEEEEE-----ecC--CCCCceEEEEECCCCCEEEEEEEecc-CCcc--eEecCEEEeCCC
Confidence 4679999999876 67899999862 221 23346999999999999999999842 1221 778999988776
Q ss_pred EEEec
Q 006973 252 TLRVA 256 (623)
Q Consensus 252 ~V~~a 256 (623)
.++.-
T Consensus 132 ~v~~v 136 (166)
T 2xvs_A 132 NLRLH 136 (166)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 55443
No 118
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=55.86 E-value=23 Score=34.80 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=48.6
Q ss_pred CCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCC---C------CeEEEEEechHHHHHHhhcccCcEEEEee
Q 006973 183 YQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDED---G------TQIQATMFNEAARKFYDRFQLGKVYYISR 250 (623)
Q Consensus 183 ~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~---G------~~I~at~~~~~~~kf~~~l~eG~vy~is~ 250 (623)
..+...|.|||.+--++|...+ | ..+.+|.|+=.. | +-|++++|+..++... .|+.|+.+.|.+
T Consensus 127 ~~N~v~l~G~l~~dpe~r~t~~--G-~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G 199 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLRYTPQ--G-TAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIG 199 (264)
T ss_dssp CCEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEE
T ss_pred ceEEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEE
Confidence 4578999999999888887543 2 146666653221 1 2599999999999999 999999999985
No 119
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=54.14 E-value=39 Score=36.75 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=54.3
Q ss_pred CCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHH----HHHhhcccCcEEEEeeeEEEecCCCc
Q 006973 185 GNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAR----KFYDRFQLGKVYYISRGTLRVANKQF 260 (623)
Q Consensus 185 ~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~----kf~~~l~eG~vy~is~~~V~~a~~~~ 260 (623)
...+|.|||.++ |. .|++.=++|.|.+| .|++.+-.+.+. +....|..|+++.+.+.-++ ..
T Consensus 87 ~~V~v~GwV~~~---R~------~Gk~~Fi~LrD~sg-~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~-t~--- 152 (529)
T 4ex5_A 87 LEVAIAGRMMLK---RV------MGKASFATVQDGSG-QIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFR-TN--- 152 (529)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEECSSC-EEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEE-CT---
T ss_pred cEEEEEEEEEee---ec------CCCeEEEEEEeCCe-eEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEE-cC---
Confidence 468899999874 32 34665578999999 899999765421 23345999999999865443 21
Q ss_pred cccCCceEEEEccCcEEEEc
Q 006973 261 KTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 261 ~~~~~~yei~f~~~T~I~~~ 280 (623)
...++|....-+.+.++
T Consensus 153 ---~gelel~~~~i~vLs~a 169 (529)
T 4ex5_A 153 ---KGELSVKCTQLRLLAKA 169 (529)
T ss_dssp ---TSCEEEEEEEEEEEECC
T ss_pred ---CCcEEEEEEEEEEEecC
Confidence 24688877766555554
No 120
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=54.05 E-value=83 Score=26.38 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=24.3
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-+.|++||+.|+.+.+. +..|..|.+. .++...|.
T Consensus 51 ~~~v~~wg~~Ae~~~~~----l~KG~~V~V~G~l~~~~~~ 86 (116)
T 3vdy_A 51 YVNCTLWRKTAENTALY----CQKGSLVGVSGRIQTRSYE 86 (116)
T ss_dssp EEEEEEEHHHHHHHHHH----CCTTCEEEEEEEEEEEEEC
T ss_pred EEEEEEECHHHHHHHHh----CCCCCEEEEEEEEEeeEEE
Confidence 59999999999887544 4556666665 45555564
No 121
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=53.74 E-value=4.6 Score=30.71 Aligned_cols=23 Identities=30% Similarity=0.807 Sum_probs=17.8
Q ss_pred ccccccccceecCCCCeeecCcCCCCc
Q 006973 483 RACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
..|..|+|||.-. .|.| +|+..+
T Consensus 16 ~rC~~C~kkvgl~---~f~C-rCg~~F 38 (64)
T 1wfh_A 16 NRCTVCRKRVGLT---GFMC-RCGTTF 38 (64)
T ss_dssp CCCTTTCCCCCTT---CEEC-SSSCEE
T ss_pred CcChhhCCccCcc---CEEe-ecCCEe
Confidence 5688999998753 5889 688765
No 122
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=53.54 E-value=3.8 Score=33.03 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=21.2
Q ss_pred eccccccccceecCCCCeeecCcCCCCccccceeE
Q 006973 482 YRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRY 516 (623)
Q Consensus 482 Y~aC~~C~KKv~~~~~~~~~C~kC~~~~~~~~~ry 516 (623)
-..|..|+||+.-. ..|.| +|+..+= -.+||
T Consensus 25 ~~rC~~C~kkvgl~--~~f~C-rCg~~FC-~~HRy 55 (85)
T 1wff_A 25 MKHCFLCGKKTGLA--TSFEC-RCGNNFC-ASHRY 55 (85)
T ss_dssp CCBCSSSCCBCSSS--SCEEC-TTCCEEC-TTTCS
T ss_pred CccchhhCCeeccc--CCeEc-CCCCEec-ccCCC
Confidence 35788999998652 35899 4987651 24565
No 123
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=53.50 E-value=77 Score=28.43 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=39.6
Q ss_pred eeEEEEEEEEeCCceEEEEccCCceeeEEEEEE----EeC-Ccc------EEEEEEechhhhhhhhHhhhcCCCCcEEEE
Q 006973 309 LVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITV----ADE-TKR------TVTVSLWNELATNVGQELLDNADKSPIVAI 377 (623)
Q Consensus 309 ~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l----~D~-sg~------~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i 377 (623)
.|-++|.|..--++. .+. +|..+.+-.|-. .|. +|. -+.|++||+.|+.+.+. +..|..|.|
T Consensus 10 ~V~LiGrL~~dPelr--~t~-~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~----l~KG~~V~V 82 (158)
T 3tqy_A 10 KVILIGNLGQDPEVR--YTP-NGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEY----LRKGSKIYI 82 (158)
T ss_dssp EEEEEEEESSSCEEE--ECT-TCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHH----CCTTCEEEE
T ss_pred EEEEEEEECCCCEEE--ECC-CCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhh----cCCCCEEEE
Confidence 477788776532222 122 354433222222 233 332 47999999999877543 455666666
Q ss_pred E-eEEeeecc
Q 006973 378 K-SLKVGDFQ 386 (623)
Q Consensus 378 ~-~~kV~~f~ 386 (623)
. .++...|.
T Consensus 83 eG~L~~~~~~ 92 (158)
T 3tqy_A 83 EGSLRTRKWQ 92 (158)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEeeeEE
Confidence 4 45666664
No 124
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=53.13 E-value=57 Score=27.74 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=35.8
Q ss_pred eEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeC-----Ccc------EEEEEEechhhhhhhhHhhhcCCCCcEEEEE
Q 006973 310 VDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADE-----TKR------TVTVSLWNELATNVGQELLDNADKSPIVAIK 378 (623)
Q Consensus 310 vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~-----sg~------~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~ 378 (623)
|-++|.++.--+++. +. +|.. ..+|.|.-. .|. .|.|++||+.|+.. +. ...|.-|.|.
T Consensus 4 viL~GrL~~dPelRy--Tp-sG~~--V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~----l~kGs~V~Ve 73 (115)
T 3fhw_A 4 LELSARVLECGAMRH--TP-AGLP--ALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-AD----TPLGTEMQVQ 73 (115)
T ss_dssp EEEEEEEEEECCCEE--CT-TSCE--EEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TT----CCTTCEEEEE
T ss_pred EEEEEEECcCcceEE--CC-CCCE--EEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hc----cCCCCEEEEE
Confidence 557788877666653 22 3543 333333322 221 38999999999885 33 4567777776
Q ss_pred e
Q 006973 379 S 379 (623)
Q Consensus 379 ~ 379 (623)
|
T Consensus 74 G 74 (115)
T 3fhw_A 74 G 74 (115)
T ss_dssp E
T ss_pred E
Confidence 4
No 125
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=53.05 E-value=7.7 Score=28.89 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=19.9
Q ss_pred ccccccc-cee-cCCCCeeecCcCCCCcc
Q 006973 484 ACKTCNK-KVT-DALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~K-Kv~-~~~~~~~~C~kC~~~~~ 510 (623)
.||.|+. .+. +...|.+.|..|+..+.
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 6999986 444 33457899999997653
No 126
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=52.76 E-value=5.3 Score=31.05 Aligned_cols=28 Identities=21% Similarity=0.630 Sum_probs=21.0
Q ss_pred CeEeccccccccceecCCCCeeecCcCCC
Q 006973 479 AMWYRACKTCNKKVTDALGSGYWCEGCQK 507 (623)
Q Consensus 479 ~~~Y~aC~~C~KKv~~~~~~~~~C~kC~~ 507 (623)
...| -|+.|++.+.....+.-+|+.|+.
T Consensus 26 ~v~Y-~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 26 TLKY-ICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCCE-ECSSSCCEECCCTTSTTCCSSSCC
T ss_pred eEEE-ECCCCCCcceeCCCCCccCCCCCc
Confidence 3445 499999997655455679999997
No 127
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=51.70 E-value=76 Score=29.75 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=23.7
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-|+|++|++.|+.+.+. +..+..|.|. .++...|.
T Consensus 54 wi~VvawgklAE~v~~~----L~KG~~V~VeGrL~~rswe 89 (199)
T 3eiv_A 54 FLTCSVWRQAAENVAES----LQRGMRVIVQGRLKQRSYE 89 (199)
T ss_dssp EEEEEEETHHHHHHHHH----CCTTCEEEEEEEEEEEC--
T ss_pred EEEEEEEhHHHHHHHHh----cCCCCEEEEEEEEEeeEEE
Confidence 58999999999887554 4456655554 56666675
No 128
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=50.15 E-value=90 Score=27.07 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=24.3
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-+.|++||+.|+.+.+. +..|..|.|. .++...|.
T Consensus 50 ~~~v~~wg~~Ae~~~~~----l~KG~~V~V~G~L~~~~~~ 85 (134)
T 2vw9_A 50 FIDARLFGRTAEIANQY----LSKGSSVLIEGRLTYESWM 85 (134)
T ss_dssp EEEEEEEHHHHHHHHHH----CCTTCEEEEEEEEEEEEEE
T ss_pred EEEEEEEcHHHHHHHHh----CCCCCEEEEEEEEEeeeEE
Confidence 59999999999887543 4556666665 45555664
No 129
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=50.11 E-value=11 Score=43.39 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=53.2
Q ss_pred CeeeccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhccc--CcEEEEee
Q 006973 173 RVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQL--GKVYYISR 250 (623)
Q Consensus 173 ~~~~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~e--G~vy~is~ 250 (623)
...+|.+|.++. .-+|.|+|.+....+ + +.++.+.+.+.|++| .|.+++|+.. -....|++ |+.|.+++
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~----~~~~~~~~~~~d~~~-~~~~~~f~~~--~~~~~~~~~~g~~~~~~G 225 (780)
T 1gm5_A 155 KIFKLNDLLPGE-KVTTQGKIVSVETKK-F----QNMNILTAVLSDGLV-HVPLKWFNQD--YLQTYLKQLTGKEVFVTG 225 (780)
T ss_dssp CCCCSSCCCSSC-CCEEEECCCCCEEEE-C----SSCEEEEEEECCSSC-CEEEEECSCC--TTHHHHHTTCSSCEEEEE
T ss_pred cCCcHHHcCCCC-EEEEEEEEEEEEeec-C----CCCeEEEEEEEECCc-eEEEEEECcH--HHHhhCccCCCCEEEEEE
Confidence 457888888765 788999998753221 1 234678889999999 8999999942 24567888 99999874
Q ss_pred eEEEe
Q 006973 251 GTLRV 255 (623)
Q Consensus 251 ~~V~~ 255 (623)
+|..
T Consensus 226 -~~~~ 229 (780)
T 1gm5_A 226 -TVKS 229 (780)
T ss_dssp -EECS
T ss_pred -EEEE
Confidence 4544
No 130
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=49.66 E-value=6.9 Score=39.15 Aligned_cols=26 Identities=35% Similarity=0.837 Sum_probs=19.7
Q ss_pred cccccccceecC-----CCCeeecCcCCCCc
Q 006973 484 ACKTCNKKVTDA-----LGSGYWCEGCQKND 509 (623)
Q Consensus 484 aC~~C~KKv~~~-----~~~~~~C~kC~~~~ 509 (623)
.|+.|+..+... +-++|+|+.|++..
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQKHH 283 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSCC-
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCccccc
Confidence 799999776541 24689999999864
No 131
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=48.91 E-value=44 Score=34.89 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=50.1
Q ss_pred eccccCCCCCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEec--hHHHHHHhhcccCcEEEEeee
Q 006973 176 PLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFN--EAARKFYDRFQLGKVYYISRG 251 (623)
Q Consensus 176 ~I~~L~p~~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~--~~~~kf~~~l~eG~vy~is~~ 251 (623)
+|.++.||++ ..++|.|..+- +.- +|-..-|.|-|+.+ +|.|.+|. ....+.-..|..|+.+.+.+.
T Consensus 277 ~i~~~~~~~~-~~v~G~V~~~P--~~~-----~GGHV~f~l~d~~~-~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 277 EVHRLENYRS-YRLRGRVTLEP--YDI-----EGGHVFFEIDTKFG-SVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp GCSSCCTTCE-EEEEEEEEEEE--EEE-----TTTEEEEEEEETTE-EEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred cccccccCce-EEEEEEEecCc--Eec-----cCceEEEEEEcCCC-EEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 4888999885 66899998741 211 34466688889766 99999999 446677777899999998765
No 132
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=47.08 E-value=8.6 Score=29.18 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=22.9
Q ss_pred EeccccccccceecCCCCeeecCcCCCCc
Q 006973 481 WYRACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 481 ~Y~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
....|..|++.+.....+.-+|+.|+--+
T Consensus 20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCCCceECCCCCcEE
Confidence 35679999999876656779999998543
No 133
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=46.75 E-value=65 Score=34.68 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=54.6
Q ss_pred CCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHH-H---HHHhhcccCcEEEEeeeEEEecCCCc
Q 006973 185 GNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAA-R---KFYDRFQLGKVYYISRGTLRVANKQF 260 (623)
Q Consensus 185 ~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~-~---kf~~~l~eG~vy~is~~~V~~a~~~~ 260 (623)
...+|.|||.++ |. .|++.=++|.|.+| .|++.+-.+.+ + +....|..|+++.+.+.-++..
T Consensus 57 ~~V~v~Gwv~~~---R~------~gk~~F~~LrD~sg-~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~---- 122 (493)
T 3a74_A 57 IEVAVAGRIMTK---RG------MGKAGFAHIQDVTG-QIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK---- 122 (493)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEEETTE-EEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT----
T ss_pred CEEEEEEEEEEE---ec------CCCcEEEEEEECCE-eEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC----
Confidence 358899999874 32 34666678999999 89999965432 1 1225689999999987544332
Q ss_pred cccCCceEEEEccCcEEEEc
Q 006973 261 KTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 261 ~~~~~~yei~f~~~T~I~~~ 280 (623)
...+||..+.-+.+.++
T Consensus 123 ---~ge~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 123 ---VGELSIKVSSYEFLTKA 139 (493)
T ss_dssp ---TCCEEEEEEEEEEEECC
T ss_pred ---CCcEEEEEEEEEEcccc
Confidence 14688888776666554
No 134
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=45.34 E-value=47 Score=35.86 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=54.8
Q ss_pred CCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechH-----HHHHHhhcccCcEEEEeeeEEEecCCC
Q 006973 185 GNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA-----ARKFYDRFQLGKVYYISRGTLRVANKQ 259 (623)
Q Consensus 185 ~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~-----~~kf~~~l~eG~vy~is~~~V~~a~~~ 259 (623)
...+|.|||.++ |. .|++.=++|.|.+| .|++.+-.+. .++....|..|+++.+.+.-++..
T Consensus 65 ~~V~v~Gwv~~~---R~------~gk~~F~~LrD~sg-~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~--- 131 (504)
T 1e1o_A 65 IEVSVAGRMMTR---RI------MGKASFVTLQDVGG-RIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ--- 131 (504)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEEETTE-EEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT---
T ss_pred CEEEEEEEEEEE---ec------CCCcEEEEEEECCe-eEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC---
Confidence 368999999874 33 34666678999999 8999996542 221335699999999987644432
Q ss_pred ccccCCceEEEEccCcEEEEc
Q 006973 260 FKTVQNDYEMNLNENSEVEEA 280 (623)
Q Consensus 260 ~~~~~~~yei~f~~~T~I~~~ 280 (623)
...+||..+.-..+.++
T Consensus 132 ----~ge~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 132 ----TGELSIHCTELRLLTKA 148 (504)
T ss_dssp ----TCCEEEEEEEEEEEECC
T ss_pred ----CceEEEEEEEEEEeccc
Confidence 14688888766666554
No 135
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=44.21 E-value=27 Score=32.03 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=29.7
Q ss_pred eccccccccceecC-----CCCeeecCcCCCCccccceeEEEEEEEEeCCCcE
Q 006973 482 YRACKTCNKKVTDA-----LGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEA 529 (623)
Q Consensus 482 Y~aC~~C~KKv~~~-----~~~~~~C~kC~~~~~~~~~ry~l~~~i~D~Tg~~ 529 (623)
+.=||.|+.++... ....+.|+.|+.... ..++..+.+.+.+ .|.+
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~v~~ii~~-~~~v 53 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHY-QNPKVIVGCIPEW-ENKV 53 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEEC-CCCEEEEEEEEEE-TTEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCccC-CCCceEEEEEEEe-CCEE
Confidence 45699999998532 123678999995432 3456666666666 4544
No 136
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=44.07 E-value=71 Score=26.37 Aligned_cols=60 Identities=7% Similarity=0.053 Sum_probs=36.1
Q ss_pred eEEEEEEEEeCCceEEEEccCCceeeEEEEEEE-----eCCccE-------EEEEEechhhhhhhhHhhhcCCCCcEEEE
Q 006973 310 VDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVA-----DETKRT-------VTVSLWNELATNVGQELLDNADKSPIVAI 377 (623)
Q Consensus 310 vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~-----D~sg~~-------I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i 377 (623)
|-++|.+..--+++. +. +|..+ -+|.|. ++++ - ++|++||+.|+...+. ...|.-|.+
T Consensus 5 v~L~G~l~~dpelR~--t~-~G~~v--~~f~lA~~~~~~~~~-~~r~~~~~~~vv~~g~~Ae~~~~~----l~KG~~V~V 74 (104)
T 1txy_A 5 LVLSGTVCRAPLRKV--SP-SGIPH--CQFVLEHRSVQEEAG-FHRQAWCQMPVIVSGHENQAITHS----ITVGSRITV 74 (104)
T ss_dssp EEEEEEEEEEEEEEE--CT-TSCEE--EEEEEEEEEEEEETT-EEEEEEEEEEEEEESSTTHHHHTT----CCTTCEEEE
T ss_pred EEEEEEECCCceEEE--CC-CCCEE--EEEEEEEeCccccCC-ceeceeEEEEEEEEhHHHHHHHhh----CCCCCEEEE
Confidence 667788776544432 22 35433 333332 2233 4 9999999999886543 466777777
Q ss_pred Ee
Q 006973 378 KS 379 (623)
Q Consensus 378 ~~ 379 (623)
.|
T Consensus 75 ~G 76 (104)
T 1txy_A 75 QG 76 (104)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 137
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=43.99 E-value=1.3e+02 Score=24.74 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=40.9
Q ss_pred eeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEe-----CCc------cEEEEEEechhhhhhhhHhhhcCCCCcEEEE
Q 006973 309 LVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVAD-----ETK------RTVTVSLWNELATNVGQELLDNADKSPIVAI 377 (623)
Q Consensus 309 ~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D-----~sg------~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i 377 (623)
-|-++|.++.--+++. +. +|..+ -+|.|.- ++| ..+.|++||+.|+ ... ...|.-|.+
T Consensus 9 kv~LiG~L~~dPelRy--tp-~G~~v--~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-----l~KG~~v~v 77 (103)
T 3k8a_A 9 LVSLAALIEKAFPIRY--TP-AGIPV--LDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-----YRQGDCATV 77 (103)
T ss_dssp EEEEEEEEEEECCCEE--CT-TSCEE--EEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-----TCTTCEEEE
T ss_pred EEEEEEEECCCCceEE--CC-CCCEE--EEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-----cCCCCEEEE
Confidence 4777888887666653 22 35433 2333321 222 1389999999998 532 455777777
Q ss_pred Ee-EEeeeccce
Q 006973 378 KS-LKVGDFQGI 388 (623)
Q Consensus 378 ~~-~kV~~f~G~ 388 (623)
.| .+...|+++
T Consensus 78 eGrL~~rs~~~~ 89 (103)
T 3k8a_A 78 EGFLAQKSRRSL 89 (103)
T ss_dssp EEEEEESSSSCC
T ss_pred EEEEEECccCCc
Confidence 54 555667765
No 138
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=42.34 E-value=15 Score=44.14 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=30.0
Q ss_pred CeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeEE
Q 006973 186 NWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTL 253 (623)
Q Consensus 186 ~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V 253 (623)
.-+|-|-|+.....++ ++|+ ++.-++|-|++| .+.+++|.+..+++.+.|.+|.++.+.+ +|
T Consensus 1044 ~v~v~G~v~~~~~~~T---k~G~-~maf~tleD~tg-~~evvvf~~~~~~~~~~l~~~~~~~v~G-~v 1105 (1220)
T 2hpi_A 1044 KVLLSGMVEEVVRKPT---RSGG-MMARFTLSDETG-ALEVVVFGRAYEGVSPKLKEDIPLLVLA-EV 1105 (1220)
T ss_dssp EEEEEEEECCC----------------CEEEEETTE-EEEEC-------------CTTCEEEEEE-EE
T ss_pred eEEEEEEEEEEEEeec---CCCC-eEEEEEEEECCC-CEEEEEcHHHHHHHHHHhccCCEEEEEE-EE
Confidence 4567788876443332 2222 344568999999 8999999999999999999999999864 55
No 139
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=42.24 E-value=1.1e+02 Score=26.68 Aligned_cols=62 Identities=6% Similarity=0.033 Sum_probs=36.6
Q ss_pred eeEEEEEEEEeCCceEEEEccCCceeeEEEEEE-----EeCCcc------EEEEEEechhhhhhhhHhhhcCCCCcEEEE
Q 006973 309 LVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITV-----ADETKR------TVTVSLWNELATNVGQELLDNADKSPIVAI 377 (623)
Q Consensus 309 ~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l-----~D~sg~------~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i 377 (623)
-|-++|.++.--+++. +. +|..+ .+|.| .++.|. -|+|++||+.|+...+. ...|.-|.|
T Consensus 21 kViLiGrL~~DPElRy--Tp-sG~~V--a~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~y----l~KGs~V~V 91 (134)
T 1v1q_A 21 RLVLSGTVCRAPLRKV--SP-SGIPH--CQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHS----ITVGSRITV 91 (134)
T ss_dssp EEEEEEEEEEEEEEEE--CT-TCCEE--EEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTT----CCTTCEEEE
T ss_pred EEEEEEEECcCCceEE--CC-CCCEE--EEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHh----cCCCCEEEE
Confidence 3677888776554432 22 35433 22322 223331 38999999999987543 456777776
Q ss_pred Ee
Q 006973 378 KS 379 (623)
Q Consensus 378 ~~ 379 (623)
.|
T Consensus 92 eG 93 (134)
T 1v1q_A 92 QG 93 (134)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 140
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=42.23 E-value=18 Score=33.17 Aligned_cols=28 Identities=14% Similarity=0.445 Sum_probs=25.0
Q ss_pred EEEEEEEeCCCCeEEEEEechHHHHHHhh
Q 006973 211 VFNVELTDEDGTQIQATMFNEAARKFYDR 239 (623)
Q Consensus 211 ~f~~~L~D~~G~~I~at~~~~~~~kf~~~ 239 (623)
++++.++|.+| .+.+++|++.++++..+
T Consensus 76 il~~~i~D~TG-~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 76 MLRAFVQDSTG-TIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp CEEEEEEETTE-EEEEEECHHHHHHHHHH
T ss_pred EEEEEEEeCCC-CEEEEEEhHHHHHHhCC
Confidence 68999999999 89999999988887765
No 141
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=41.81 E-value=22 Score=32.85 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.6
Q ss_pred EEEEEEEeCCCCeEEEEEechHHHHHH
Q 006973 211 VFNVELTDEDGTQIQATMFNEAARKFY 237 (623)
Q Consensus 211 ~f~~~L~D~~G~~I~at~~~~~~~kf~ 237 (623)
.+++.+.|.+| .+.+++|++.++++-
T Consensus 80 ~l~~~i~D~Tg-~~~~t~F~~~ae~il 105 (181)
T 1l1o_C 80 ILSVNIADFQE-NQWVTCFQESAEAIL 105 (181)
T ss_dssp EEEEEEECSSC-EEEEEEEHHHHHHHH
T ss_pred EEEEEEEeCCC-CEEEEEEhHHHHHHh
Confidence 68999999999 899999999876653
No 142
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=41.03 E-value=24 Score=42.37 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=36.8
Q ss_pred cccccccc---ccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCccEEEEEEechhhhhhhhHhhhcCCC
Q 006973 295 VPIDELGR---YVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATNVGQELLDNADK 371 (623)
Q Consensus 295 ~~i~di~~---~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg~~I~vtLWg~~A~~~~~~~~~~~~~ 371 (623)
+++.+|.. ....+..|-|.|+|+.+.... +|+ |+ ..--++|.|.+| .+++++|.+....+... ...
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~---Tk~-G~--~maf~tleD~tg-~~evvvf~~~~~~~~~~----l~~ 1095 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRKP---TRS-GG--MMARFTLSDETG-ALEVVVFGRAYEGVSPK----LKE 1095 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC------------------CEEEEETTE-EEEEC-----------------CT
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEee---cCC-CC--eEEEEEEEECCC-CEEEEEcHHHHHHHHHH----hcc
Confidence 45666641 123455677999999886543 443 43 234689999999 79999999988776443 345
Q ss_pred CcEEEEEeEEee
Q 006973 372 SPIVAIKSLKVG 383 (623)
Q Consensus 372 ~~Vv~i~~~kV~ 383 (623)
+.++.+++ +|.
T Consensus 1096 ~~~~~v~G-~v~ 1106 (1220)
T 2hpi_A 1096 DIPLLVLA-EVE 1106 (1220)
T ss_dssp TCEEEEEE-EEC
T ss_pred CCEEEEEE-EEE
Confidence 67777765 443
No 143
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=40.70 E-value=1.7e+02 Score=24.81 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=24.5
Q ss_pred EEEEEEec-hhhhhhhhHhhhcCCCCcEEEEE-eEEeeeccc
Q 006973 348 TVTVSLWN-ELATNVGQELLDNADKSPIVAIK-SLKVGDFQG 387 (623)
Q Consensus 348 ~I~vtLWg-~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~G 387 (623)
-++|++|| ..|+.+.+. +..|..|.+. .++...|..
T Consensus 55 ~~~v~~wg~~~Ae~~~~~----l~KG~~V~V~G~L~~~~~~d 92 (124)
T 3ulp_A 55 WHRIVVYDQNIVDLIDKY----LRKGRRVYVQGSLHTRKWHT 92 (124)
T ss_dssp EEEEEECCHHHHHHHHHH----CCTTCEEEEEEEEEEEEECC
T ss_pred EEEEEEEEchHHHHHHhh----cCCCCEEEEEEEEEeEEEeC
Confidence 59999999 799877544 4556666664 455556643
No 144
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=40.44 E-value=58 Score=31.87 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=45.7
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE------eCCCC-------eEEEEEechH--HHHHHhhcccCcEEEE
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT------DEDGT-------QIQATMFNEA--ARKFYDRFQLGKVYYI 248 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~------D~~G~-------~I~at~~~~~--~~kf~~~l~eG~vy~i 248 (623)
.++..|.||+ +--++|... | ..+.+|.|+ |.+|. -+++++|+.. ++ +...|+.|+-+++
T Consensus 146 lNkV~LiGrL-~DPElR~t~---G-~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~V 219 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY---E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCV 219 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET---T-EEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC---C-cEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEE
Confidence 4678999999 888888653 2 246666653 22332 4999999998 88 8888999999999
Q ss_pred ee
Q 006973 249 SR 250 (623)
Q Consensus 249 s~ 250 (623)
.+
T Consensus 220 eG 221 (257)
T 4dni_A 220 NG 221 (257)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 145
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=39.34 E-value=1e+02 Score=27.69 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=40.3
Q ss_pred CeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechH---HHHHHhhcccCcEEEEee
Q 006973 186 NWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA---ARKFYDRFQLGKVYYISR 250 (623)
Q Consensus 186 ~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~---~~kf~~~l~eG~vy~is~ 250 (623)
.-+|.|.|+..- .+. +...+.|=|.+|..|.|.+|-+. +......+.+|++..+.+
T Consensus 49 ~V~IvGiVv~~~---~~~------~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G 107 (159)
T 3kf6_A 49 WIQIVGYIAAID---IYE------GKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG 107 (159)
T ss_dssp EEEEEEEEEEEE---EET------TEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEEEEEE---EeC------CEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEE
Confidence 456889998843 221 24567778888977999999765 334555689999999875
No 146
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=38.60 E-value=22 Score=27.46 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=16.5
Q ss_pred EeccccccccceecCCCCeeecCcCCCC
Q 006973 481 WYRACKTCNKKVTDALGSGYWCEGCQKN 508 (623)
Q Consensus 481 ~Y~aC~~C~KKv~~~~~~~~~C~kC~~~ 508 (623)
.-.||..|+.-+ .. -.|+.|+-.
T Consensus 10 ~~~AC~~C~~~~-~~----~~CPnC~s~ 32 (69)
T 1ryq_A 10 SEKACRHCHYIT-SE----DRCPVCGSR 32 (69)
T ss_dssp -CEEETTTCBEE-SS----SSCTTTCCC
T ss_pred hhhhHHhCCccc-cC----CcCCCccCC
Confidence 357999999955 22 359999854
No 147
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=38.35 E-value=11 Score=29.96 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=28.4
Q ss_pred EeccccccccceecCCCCeeecCcCCCCccccceeEEEEEEEEeCCCcEE
Q 006973 481 WYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAW 530 (623)
Q Consensus 481 ~Y~aC~~C~KKv~~~~~~~~~C~kC~~~~~~~~~ry~l~~~i~D~Tg~~~ 530 (623)
|-..|-.|.+-..+ ....+|++|+... -.++.+.+.++ |++.
T Consensus 14 ~iLrC~aCf~~t~~--~~k~FCp~CGn~T-----L~Rvsvsvd~~-G~~~ 55 (79)
T 2con_A 14 YILRCHGCFKTTSD--MNRVFCGHCGNKT-----LKKVSVTINDD-GTLH 55 (79)
T ss_dssp EEEECSSSCCEESC--SSCCSCSSSCCSC-----CEEEECBCCSS-CCCB
T ss_pred eeeEecccceECCC--cccccccccCccc-----ceEEEEEECCC-CcEE
Confidence 57789889987654 4678999999742 34555555444 6653
No 148
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=38.35 E-value=12 Score=36.41 Aligned_cols=26 Identities=19% Similarity=0.567 Sum_probs=19.4
Q ss_pred Eeccccccccc----eecCCCCeeecCcCCCC
Q 006973 481 WYRACKTCNKK----VTDALGSGYWCEGCQKN 508 (623)
Q Consensus 481 ~Y~aC~~C~KK----v~~~~~~~~~C~kC~~~ 508 (623)
.-..||.|+++ +. . +|.|+|-+|+..
T Consensus 13 ~~~~CP~Cg~~d~~~~~-~-dg~~~C~~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLF-S-DGHTFCYVCEKW 42 (255)
T ss_dssp EEECCSSSCCSSCEEEE-T-TSCEEETTTCCE
T ss_pred cCCcCCCCCCCCCceEe-C-CCCeecccCCCc
Confidence 46789999884 33 2 567999999853
No 149
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=38.18 E-value=13 Score=33.99 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=21.4
Q ss_pred ecccccccc---ce-ecCCCCeeecCcCCCCcc
Q 006973 482 YRACKTCNK---KV-TDALGSGYWCEGCQKNDE 510 (623)
Q Consensus 482 Y~aC~~C~K---Kv-~~~~~~~~~C~kC~~~~~ 510 (623)
-..||.|++ .+ .+...|.+.|..|+-.+.
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 347999997 34 444478999999997653
No 150
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.15 E-value=24 Score=29.54 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=26.3
Q ss_pred EeccccccccceecCCCCeeecCcCCCCccccceeEEEE
Q 006973 481 WYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMV 519 (623)
Q Consensus 481 ~Y~aC~~C~KKv~~~~~~~~~C~kC~~~~~~~~~ry~l~ 519 (623)
+-..|..|+....+..+..-+|+.|+...- -.+||.+.
T Consensus 66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe~I-e~P~F~I~ 103 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEINIPSRCPKCKSEWI-EEPRFKLE 103 (105)
T ss_dssp CCCBBTTTCCBCCCCSSCCSSCSSSCCCCB-CCCCEEEE
T ss_pred ECcChhhCcCeecccCCCCCCCcCCCCCcc-CCcceeec
Confidence 456799999886333344579999997653 35788764
No 151
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=38.10 E-value=1.8e+02 Score=26.16 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=25.4
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-+.|++||+.|+.+.+. +..+..|.|. .++...|.
T Consensus 54 ~~~v~~wg~~Ae~~~~~----l~KG~~V~VeGrL~~~~~~ 89 (168)
T 3afp_A 54 FLRCNIWREAAENVAES----LTRGARVIVTGRLKQRSFE 89 (168)
T ss_dssp EEEEEEEHHHHHHHHHH----CCTTCEEEEEEEEEEEEEC
T ss_pred EEEEEEehHHHHHHHHh----CCCCCEEEEEEEEEeeeEE
Confidence 69999999999987654 4556666665 46666675
No 152
>3nbi_A RECQ-mediated genome instability protein 1; OB-fold, RPA-like, protein binding; 2.00A {Homo sapiens}
Probab=37.86 E-value=28 Score=33.20 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=31.3
Q ss_pred e-EEEEEeCcccceeeccccccccccccCccceeeEEEEcc
Q 006973 41 R-YMFNASDGKKRLKAILPSNLSSEVISGNIQNKGLIRLLD 80 (623)
Q Consensus 41 r-yr~~lSDG~~~~~~mlat~ln~~v~~~~l~~~siirl~~ 80 (623)
| |+|.|+||...+.||--..+..+- ..+..|+-|.|+.
T Consensus 136 rmLkL~LtDG~~~i~AiE~~~i~~l~--~~~~pGtKill~~ 174 (216)
T 3nbi_A 136 RMLMLQLTDGIVQIQGMEYQPIPILH--SDLPPGTKILIYG 174 (216)
T ss_dssp CCEEEEEESSSCEEEEEECSCCTTCC--TTCCTTCEEEEEE
T ss_pred eEEEEEEcCCCeEEEEEEcccchhcc--cCCCCCceEEEeC
Confidence 6 899999999999999877777663 2488899999975
No 153
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=37.44 E-value=12 Score=28.04 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=19.1
Q ss_pred ccccccccceecCCCCeeecCcCCCCc
Q 006973 483 RACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
..|-.|++...+ .+.|+|++|+..+
T Consensus 16 ~~C~~C~~~~~~--~~~y~C~~C~~~F 40 (59)
T 1z60_A 16 RFCYGCQGELKD--QHVYVCAVCQNVF 40 (59)
T ss_dssp CEETTTTEECTT--SEEECCTTTTCCB
T ss_pred CcccccCcccCC--CccEECCccCcCc
Confidence 358889999864 3469999998764
No 154
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=36.76 E-value=6.4 Score=35.80 Aligned_cols=41 Identities=22% Similarity=0.446 Sum_probs=27.8
Q ss_pred EEEEEEEEeCCCCeEeccccccccceecCCCCeeecCcCCCCc
Q 006973 467 IKAYISLIKPDQAMWYRACKTCNKKVTDALGSGYWCEGCQKND 509 (623)
Q Consensus 467 v~a~I~~i~~d~~~~Y~aC~~C~KKv~~~~~~~~~C~kC~~~~ 509 (623)
|.++...|+.. ..|-..|..|++..... ...-+|+.|+...
T Consensus 118 v~~~~~~i~~~-~~~~y~C~~Cg~~~~~~-~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 118 FRTLKRGIKKV-IKWRYVCIGCGRKFSTL-PPGGVCPDCGSKV 158 (165)
T ss_dssp EECCSCCCSSC-CCCCEEESSSCCEESSC-CGGGBCTTTCCBE
T ss_pred EEchhhhcccc-ccEEEECCCCCCcccCC-CCCCcCCCCCCcc
Confidence 44555556655 44577899999987643 3335899999753
No 155
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=36.47 E-value=35 Score=27.48 Aligned_cols=30 Identities=40% Similarity=0.513 Sum_probs=24.6
Q ss_pred EEEEeCCCcEEEEEehHhHHHHhCCCHHHHHH
Q 006973 520 ARVCDGSGEAWISIFNEEAERIIGCSADELNE 551 (623)
Q Consensus 520 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 551 (623)
+.+.|..|. +..++..+++|+|.+++|+..
T Consensus 6 i~~~d~~g~--i~~~N~a~~~l~G~~~~el~G 35 (119)
T 2vv6_A 6 MIVIDGHGI--IQLFSTAAERLFGWSELEAIG 35 (119)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTT
T ss_pred EEEECCCCe--EEEEhHHHHHHhCCCHHHHcC
Confidence 346787775 577999999999999999864
No 156
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=35.22 E-value=25 Score=27.96 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=26.0
Q ss_pred CeEeccccccccceecCCCCeeecCcCCCCccccceeEEEEEEEEeCCC
Q 006973 479 AMWYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSG 527 (623)
Q Consensus 479 ~~~Y~aC~~C~KKv~~~~~~~~~C~kC~~~~~~~~~ry~l~~~i~D~Tg 527 (623)
.+.+.||..|+.-+..+ .|+.|+-.. ....|.=-+.|.|...
T Consensus 20 ~m~~rAC~~C~~v~~~d-----~CPnCgs~~--~T~~w~G~ViI~dPe~ 61 (81)
T 3p8b_A 20 HMSEKACRHCHYITSED-----RCPVCGSRD--LSEEWFDLVIIVDVEN 61 (81)
T ss_dssp --CCEEETTTCBEESSS-----SCTTTCCCC--EESCEEEEEEESCTTT
T ss_pred chhHHHHhhCCCccCCC-----CCCCCCCCc--cCCccceEEEEeCChH
Confidence 34578999999987653 499998643 2333444445555543
No 157
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=35.11 E-value=32 Score=29.90 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.8
Q ss_pred eEEEEEeCcccceeecccc
Q 006973 41 RYMFNASDGKKRLKAILPS 59 (623)
Q Consensus 41 ryr~~lSDG~~~~~~mlat 59 (623)
---+.+|||+|+++++...
T Consensus 52 ~A~llvSDgthsvrclvTr 70 (161)
T 2i46_A 52 GATLLVSDGTHSVRCLVTR 70 (161)
T ss_dssp CEEEEEECSSCEEEEEECH
T ss_pred eeEEEEcCCceEEEEEecH
Confidence 3578999999999998843
No 158
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=33.76 E-value=17 Score=37.21 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.8
Q ss_pred ccccccccc---e-ecCCCCeeecCcCCCCcc
Q 006973 483 RACKTCNKK---V-TDALGSGYWCEGCQKNDE 510 (623)
Q Consensus 483 ~aC~~C~KK---v-~~~~~~~~~C~kC~~~~~ 510 (623)
..||.|+.. + .+...|.+-|..||....
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 469999883 4 333468899999998663
No 159
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=33.68 E-value=3e+02 Score=25.63 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=112.4
Q ss_pred EEEEEEeeccccccccCC-CcccEEEEEEEeCCCCeEEEEEechHHHHHHhhcccCcEEEEeeeEEEecCCCccccCCce
Q 006973 189 IKVRVTSKGNMRTYKNAR-GEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRVANKQFKTVQNDY 267 (623)
Q Consensus 189 I~~RV~~K~~~r~~~~~~-g~g~~f~~~L~D~~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~~a~~~~~~~~~~y 267 (623)
..|-|+.-.++..|..+. |...+|+-+++-++- --++-+|+-. +.+.|...++..||++. .+.-
T Consensus 18 ~~VmVLkat~pF~ye~~E~~k~~MFHATVATetq-fF~VKVfn~~---LkeKF~~k~iI~ISdY~-----------~~~g 82 (206)
T 2oq0_A 18 VIVKVLSTTKPFEYETPEMEKKIMFHATVATQTQ-FFHVKVLNTS---LKEKFNGKKIIIISDYL-----------EYDS 82 (206)
T ss_dssp EEEEEEEECCCEEEECCC--EEEEEEEEEECSSC-EEEEEECCGG---GGGGGSSSSEEEEESBE-----------EETT
T ss_pred eEEEEEecccceEEechhcccceeEEEEEeecce-eEEEEEeech---hhhhcccCceEEEEeec-----------cccc
Confidence 456677777788887655 333499999999888 8999999964 44578999999999863 2345
Q ss_pred EEEEccCcEEEEccCc-CCCCCCCc----cccccccccccccCCcceeEEEEEEEEeCCceEEEEccCCceeeEEEEEEE
Q 006973 268 EMNLNENSEVEEAVNE-TAFIPQTK----FNFVPIDELGRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVA 342 (623)
Q Consensus 268 ei~f~~~T~I~~~~d~-~~~iP~~~----~~f~~i~di~~~~~~~~~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~ 342 (623)
-|..++.|.|.++..+ .-.+|... -.--+|++|.. ...+.+|.=+=.|. .|.-.+ ......|.
T Consensus 83 ~lEv~~~ssVse~~~~q~~evp~~ii~~A~~TpKI~~L~~-qa~Gt~V~GlF~v~---------kk~v~~--~~~~yeI~ 150 (206)
T 2oq0_A 83 LLEVNEESTVSEAGPNQTFEVPNKIINRAKETLKIDILHK-QASGNIVYGVFMLH---------KKTVNQ--KTTIYEIQ 150 (206)
T ss_dssp EEEECTTCEEEECCGGGCCCCCHHHHHHHTCCCCHHHHTT-SCTTCEEEEEEEEE---------EEEECS--SEEEEEEE
T ss_pred eeeeeccceEEeccCCcceeccHHHHhhcccCccchhhhc-cCCccEEceEEEEE---------EEeecc--ceEEEEEc
Confidence 6777888999887643 23345321 11235666654 23455554222221 111111 23456789
Q ss_pred eCCccEEEEEEechhhhhhhhHhhhcCCCCcEEEEEeEEeeeccce-eeecccceEEE
Q 006973 343 DETKRTVTVSLWNELATNVGQELLDNADKSPIVAIKSLKVGDFQGI-SLSTLGRSTVL 399 (623)
Q Consensus 343 D~sg~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~~kV~~f~G~-~Ls~~~~S~i~ 399 (623)
|.+| .++|...|....- .+.+|..+-+....++.-.++ .|.+...|-|.
T Consensus 151 D~tG-~MeVvv~G~~~~i-------~CeeGdkLrL~cF~L~~~~~~~~L~S~~hSfik 200 (206)
T 2oq0_A 151 DDRG-KMDVVGTGQCHNI-------PCEEGDKLQLFCFRLRKKNQMSKLISEMHSFIQ 200 (206)
T ss_dssp ETTE-EEEEEEEGGGSSC-------CCCTTCEEEEEEEEEEEETTEEEEECCTTCEEE
T ss_pred cCCC-cEEEEEeCccccc-------ccCCCCEEEEEEEEeeccCCcceEEEecceeEE
Confidence 9999 8999999977543 266788887776666653333 46666566443
No 160
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=33.51 E-value=69 Score=28.60 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=23.7
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-+.|++||+.|+...+. +..|.-|.+. .++...|.
T Consensus 64 ~~~v~~wg~~Ae~~~~~----l~KG~~V~VeGrL~~~~~~ 99 (153)
T 1z9f_A 64 FFRIVTFGRLAEFARTY----LTKGRLVLVEGEMRMRRWE 99 (153)
T ss_dssp EEEEEEEHHHHHHHHHH----CCTTCEEEEEEEEEEEC--
T ss_pred EEEEEEECHHHHHHHhh----CCCCCEEEEEEEEEeceEE
Confidence 59999999999887654 4556666554 45666674
No 161
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=33.26 E-value=61 Score=28.01 Aligned_cols=34 Identities=29% Similarity=0.169 Sum_probs=23.9
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeec
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDF 385 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f 385 (623)
-++|++||+.|+.+.+. +..|.-|.+. .++...|
T Consensus 64 w~~v~~wg~~Ae~~~~~----l~KG~~V~VeGrL~~~~~ 98 (128)
T 4dam_A 64 FFTVWANRQLATNASGS----LAVGDPVVVQGRLKVRTD 98 (128)
T ss_dssp EEEEEEEHHHHHHHHHH----CCTTCEEEEEEEEEEEEE
T ss_pred EEEEEEEcHHHHHHHHh----cCCCCEEEEEEEEEEeEE
Confidence 68999999999987654 3455655554 4555666
No 162
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=30.58 E-value=23 Score=25.76 Aligned_cols=27 Identities=26% Similarity=0.689 Sum_probs=19.2
Q ss_pred cccccccceec--------CCCCeeecCcCCCCcc
Q 006973 484 ACKTCNKKVTD--------ALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~KKv~~--------~~~~~~~C~kC~~~~~ 510 (623)
.|+.|+|.... .+...|.|+.|++.+.
T Consensus 16 ~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred cCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 58999885421 2346799999998763
No 163
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=30.25 E-value=2e+02 Score=26.65 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=23.6
Q ss_pred EEEEEEech-hhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNE-LATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~-~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-++|++||+ .|+.+.+. +..+..|.|. .++...|.
T Consensus 75 wi~Vvawgk~lAe~~~~y----L~KGs~V~VeGrL~trswe 111 (193)
T 3pgz_A 75 WHNIVIFNENLVKVVEQY----LKKGSKIYIEGQLQTRKWQ 111 (193)
T ss_dssp EEEEEECCHHHHHHHHHH----CCTTCEEEEEEEEEEEEEE
T ss_pred EEEEEEECHHHHHHHHhh----cCCCCEEEEEEEEEEEEeE
Confidence 589999997 78776443 4556666664 46666674
No 164
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=30.07 E-value=11 Score=36.14 Aligned_cols=28 Identities=14% Similarity=0.546 Sum_probs=18.1
Q ss_pred eccccccccc-eecCC----CCeeecCcCCCCc
Q 006973 482 YRACKTCNKK-VTDAL----GSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~KK-v~~~~----~~~~~C~kC~~~~ 509 (623)
..-||.|+.+ +..-. -..++|+.|+..+
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 3469999985 42211 1349999998754
No 165
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=29.99 E-value=2.8e+02 Score=25.03 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=24.4
Q ss_pred EEEEEEech-hhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNE-LATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~-~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-++|++||+ .|+.+.+. +..|..|.|. .++...|.
T Consensus 72 ~i~vv~wg~~lAe~~~~~----l~KG~~V~VeGrL~~r~~~ 108 (169)
T 3lgj_A 72 WHSVVVFNPHFAKIALQY----LHKGSKVYIEGKLQTRKWQ 108 (169)
T ss_dssp EEEEEECCHHHHHHHHHH----CCTTCEEEEEEEEEEECC-
T ss_pred EEEEEEeCHHHHHHHHHh----CCCCCEEEEEEEEEEEEEE
Confidence 689999999 99887554 4556666664 45666675
No 166
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=29.72 E-value=51 Score=26.98 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=24.5
Q ss_pred EEEEeCCCcEEEEEehHhHHHHhCCCHHHHHH
Q 006973 520 ARVCDGSGEAWISIFNEEAERIIGCSADELNE 551 (623)
Q Consensus 520 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 551 (623)
+.+.|..|. +..++..+++|+|.+++|+..
T Consensus 29 i~~~d~~g~--i~~~N~a~~~l~Gy~~~eliG 58 (130)
T 1d06_A 29 TVVSATDGT--IVSFNAAAVRQFGYAEEEVIG 58 (130)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTT
T ss_pred EEEECCCCe--EEEEcHHHHHHHCCCHHHHcC
Confidence 346788875 567899999999999999864
No 167
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=28.11 E-value=71 Score=26.78 Aligned_cols=66 Identities=20% Similarity=0.174 Sum_probs=47.6
Q ss_pred CCCeEEEEEEEeeccccccccCCCcccEEEEEEE-eC---CCCeEEEEEechHHHHHHhhcccCcEEEEeeeEEEe
Q 006973 184 QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELT-DE---DGTQIQATMFNEAARKFYDRFQLGKVYYISRGTLRV 255 (623)
Q Consensus 184 ~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~-D~---~G~~I~at~~~~~~~kf~~~l~eG~vy~is~~~V~~ 255 (623)
.++-.+.||+++--++|+..+ |+ .+.+|.|+ +. +-+-|.+++|+.+++... +..|+-+.+.+ +++.
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~--G~-~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~--~~kG~~v~v~G-~lrs 80 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELY--GE-KFFNFILEVPRLSETKDYLPITISNRLFEGMN--LEVGTRVKIEG-QLRS 80 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEET--TE-EEEEEEEEEECTTSCEEEEEEEEEGGGSTTCC--CCTTCEEEEEE-EEEE
T ss_pred CCEEEEEEEECCCceEEEecC--Cc-EEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHh--hcCCCEEEEEE-EEEe
Confidence 357889999999988886543 43 35566553 22 235899999999988654 45899998886 6654
No 168
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=27.02 E-value=25 Score=30.84 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=19.8
Q ss_pred ccccccccceecCCC-----CeeecCcCCCCc
Q 006973 483 RACKTCNKKVTDALG-----SGYWCEGCQKND 509 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~-----~~~~C~kC~~~~ 509 (623)
.=||.|+--+....+ ..|.|.+|+-..
T Consensus 25 ~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 25 RFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred eeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 449999998866522 159999998654
No 169
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.93 E-value=29 Score=27.62 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=20.1
Q ss_pred cccccccceec-----------CCCCeeecCcCCCCcc
Q 006973 484 ACKTCNKKVTD-----------ALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~KKv~~-----------~~~~~~~C~kC~~~~~ 510 (623)
.|+.|+|.... .++..|.|+.|++.+.
T Consensus 30 ~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp ECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred ECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeC
Confidence 59999887643 1345799999999764
No 170
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.54 E-value=23 Score=34.66 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=20.5
Q ss_pred ccccccccceecC-------CCCeeecCcCCCC
Q 006973 483 RACKTCNKKVTDA-------LGSGYWCEGCQKN 508 (623)
Q Consensus 483 ~aC~~C~KKv~~~-------~~~~~~C~kC~~~ 508 (623)
.+|..|+-++.+. ++...+||.|++-
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRI 231 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRI 231 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCE
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCee
Confidence 4899999888642 3577999999974
No 171
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.53 E-value=21 Score=25.65 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=13.6
Q ss_pred eccccccccceecCCCCeeecCcCCC
Q 006973 482 YRACKTCNKKVTDALGSGYWCEGCQK 507 (623)
Q Consensus 482 Y~aC~~C~KKv~~~~~~~~~C~kC~~ 507 (623)
|..|+.|++.-.. -.-+|.+|=+
T Consensus 11 ~WkC~~C~k~N~P---l~ryC~rCwa 33 (53)
T 2cr8_A 11 EWQCTECKKFNSP---SKRYCFRCWA 33 (53)
T ss_dssp CEECSSSCCEECS---SCCBCTTTCC
T ss_pred eeecccccccCCC---ccchhHHHHH
Confidence 6677778755433 2346777743
No 172
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.52 E-value=9.2 Score=29.35 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=17.8
Q ss_pred ccccccccceecCCCC--eeecCcCCCCc
Q 006973 483 RACKTCNKKVTDALGS--GYWCEGCQKND 509 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~~--~~~C~kC~~~~ 509 (623)
..|..|+||+.-. + .|.| .|+..+
T Consensus 16 ~rC~~C~kk~gL~--~~egf~C-rCg~~F 41 (67)
T 1x4w_A 16 RRCFQCQTKLELV--QQELGSC-RCGYVF 41 (67)
T ss_dssp TBCSSSCCBCCHH--HHHHHCC-SSSCCC
T ss_pred CcchhhCCeeccc--ccCceEe-cCCCEe
Confidence 4688899998753 2 3889 888765
No 173
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.36 E-value=25 Score=29.99 Aligned_cols=26 Identities=27% Similarity=0.662 Sum_probs=19.6
Q ss_pred eccccccccceecCCCCee-ecCcCCCC
Q 006973 482 YRACKTCNKKVTDALGSGY-WCEGCQKN 508 (623)
Q Consensus 482 Y~aC~~C~KKv~~~~~~~~-~C~kC~~~ 508 (623)
-..|..|++..... ...+ .|+.|+..
T Consensus 73 ~~~C~~CG~~~e~~-~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPN-ALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSC-CSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCC-CCCCCcCccccCC
Confidence 44699999987654 4456 89999875
No 174
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=26.07 E-value=2e+02 Score=26.23 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=25.0
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-+.|++||+.|+.+.+. +..+..|.|. .++...|.
T Consensus 55 ~i~vv~wg~~Ae~~~~~----l~KG~~V~VeGrL~~r~~~ 90 (178)
T 1eqq_A 55 WHRVVLFGKLAEVASEY----LRKGSQVYIEGQLRTRKWT 90 (178)
T ss_dssp EEEEEECHHHHHHHHHH----CCTTCEEEECCEEEEEEEE
T ss_pred EEEEEEccHHHHHHHHh----cCCCCEEEEEEEEEeeeEE
Confidence 68999999999887554 4557767665 45555664
No 175
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=25.87 E-value=17 Score=30.01 Aligned_cols=12 Identities=0% Similarity=0.052 Sum_probs=9.1
Q ss_pred ecccccccccee
Q 006973 482 YRACKTCNKKVT 493 (623)
Q Consensus 482 Y~aC~~C~KKv~ 493 (623)
..+||.|+..+.
T Consensus 8 ILaCP~cK~pL~ 19 (97)
T 2k5r_A 8 LLCSPDTRQPLS 19 (97)
T ss_dssp SCCCCTTSSCCE
T ss_pred heECCCCCCccc
Confidence 468999987654
No 176
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=25.70 E-value=27 Score=25.73 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=20.0
Q ss_pred cccccccceec-----------CCCCeeecCcCCCCcc
Q 006973 484 ACKTCNKKVTD-----------ALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~KKv~~-----------~~~~~~~C~kC~~~~~ 510 (623)
.|+.|+|.... .+...|.|+.|++.+.
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 58888887653 2356799999998764
No 177
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=25.23 E-value=2.5e+02 Score=24.46 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=24.8
Q ss_pred EEEEEEechhhhhhhhHhhhcCCCCcEEEEE-eEEeeecc
Q 006973 348 TVTVSLWNELATNVGQELLDNADKSPIVAIK-SLKVGDFQ 386 (623)
Q Consensus 348 ~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~ 386 (623)
-+.|++||+.|+.+.+. +..+..|.|. .++...|.
T Consensus 54 ~~~v~~wg~~Ae~~~~~----l~KG~~V~V~G~L~~~~~~ 89 (145)
T 1qvc_A 54 WHRVVLFGKLAEVASEY----LRKGSQVYIEGQLRTRKWT 89 (145)
T ss_dssp EEEEEEETHHHHHHHHH----CCTTCEEEEEEEEEEEEEC
T ss_pred EEEEEEehHHHHHHHHh----cCCCCEEEEEEEEEeeEEE
Confidence 79999999999887554 4556666554 45666664
No 178
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=24.92 E-value=27 Score=33.56 Aligned_cols=23 Identities=17% Similarity=0.570 Sum_probs=18.8
Q ss_pred ccccccccceecCCCCeeecCcCC
Q 006973 483 RACKTCNKKVTDALGSGYWCEGCQ 506 (623)
Q Consensus 483 ~aC~~C~KKv~~~~~~~~~C~kC~ 506 (623)
..||.|+..+... ++.|+|++|.
T Consensus 3 ~~Cp~C~~~~~~~-~~~~~C~~~~ 25 (269)
T 1p91_A 3 FSCPLCHQPLSRE-KNSYICPQRH 25 (269)
T ss_dssp BBCTTTCCBCEEE-TTEEECTTCC
T ss_pred ccCCCCCccceeC-CCEEECCCCC
Confidence 3699999988765 5689999986
No 179
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=24.90 E-value=61 Score=27.43 Aligned_cols=30 Identities=17% Similarity=0.443 Sum_probs=24.7
Q ss_pred EEEEeCCCcEEEEEehHhHHHHhCCCHHHHHH
Q 006973 520 ARVCDGSGEAWISIFNEEAERIIGCSADELNE 551 (623)
Q Consensus 520 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 551 (623)
+.+.|..| .+..++..|++|+|.+++|+..
T Consensus 20 i~~~D~~g--~I~~~N~aa~~l~G~~~~el~G 49 (129)
T 3mfx_A 20 MILVNANG--FIRSCNQRSAELLDCPQVSLKG 49 (129)
T ss_dssp EEEEETTS--BEEEECHHHHHHTTSCHHHHTT
T ss_pred EEEECCCC--EEEeEhHHHHHHHCcCHHHHcC
Confidence 45778877 4667899999999999999854
No 180
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=24.59 E-value=24 Score=24.03 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=11.0
Q ss_pred CCeeecCcCCCCcc
Q 006973 497 GSGYWCEGCQKNDE 510 (623)
Q Consensus 497 ~~~~~C~kC~~~~~ 510 (623)
...|.|++|++.++
T Consensus 7 ~~~~~C~~C~~~i~ 20 (39)
T 2i5o_A 7 EDQVPCEKCGSLVP 20 (39)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCCcccccccCcCC
Confidence 45789999998764
No 181
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=24.35 E-value=3.1e+02 Score=22.81 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=35.9
Q ss_pred eeEEEEEEEEeCCceEEEEccCCceeeEEEEEEEeCCc--cEEEEEEechhhhhhhhHhhhcCCCCcEEEEEe
Q 006973 309 LVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETK--RTVTVSLWNELATNVGQELLDNADKSPIVAIKS 379 (623)
Q Consensus 309 ~vDVIGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~sg--~~I~vtLWg~~A~~~~~~~~~~~~~~~Vv~i~~ 379 (623)
-|-++|.++.=-++.. +. .|+.+-.-.|-+--.++ .-|.|++|+..|+.... ..|.-|.+.|
T Consensus 13 ~V~LiGrl~~dpelr~--t~-~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~------~kG~~v~v~G 76 (107)
T 4gs3_A 13 TVTLVGKVFTPLEFSH--EL-YGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNL------EVGTRVKIEG 76 (107)
T ss_dssp CEEEEEEECSCCEEEE--EE-TTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCC------CTTCEEEEEE
T ss_pred EEEEEEEECCCceEEE--ec-CCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhh------cCCCEEEEEE
Confidence 4788999876433332 22 46554333333322222 37999999999987521 2466666654
No 182
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=24.13 E-value=37 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=18.7
Q ss_pred cccccccceec-----------CCCCeeecCcCCCCcc
Q 006973 484 ACKTCNKKVTD-----------ALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~KKv~~-----------~~~~~~~C~kC~~~~~ 510 (623)
.|+.|++.... .+...|.|+.|++.+.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 58888876532 1245699999998763
No 183
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=23.42 E-value=61 Score=28.49 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=25.3
Q ss_pred eccccccccceecCCC-----------C----------eeecCcCCCCccc---cceeEEEEEEEE
Q 006973 482 YRACKTCNKKVTDALG-----------S----------GYWCEGCQKNDEE---CSLRYIMVARVC 523 (623)
Q Consensus 482 Y~aC~~C~KKv~~~~~-----------~----------~~~C~kC~~~~~~---~~~ry~l~~~i~ 523 (623)
...|..|+...... . . .+.|++|+..-.. -.--|+.++.+.
T Consensus 70 ~~~C~~CG~~~~~~-~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~el~I~~ie~e 134 (139)
T 3a43_A 70 VFKCRNCNYEWKLK-EVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGVYVAGIKIE 134 (139)
T ss_dssp EEEETTTCCEEEGG-GCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSCEEEEEEEEE
T ss_pred cEECCCCCCEEecc-cccccccccccccccccccccccCCcCccccCCccEEecCCeEEEEEEEEE
Confidence 45688998877653 2 2 5789999865321 223455566655
No 184
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=23.05 E-value=37 Score=27.08 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=23.1
Q ss_pred EEEeCC-CcEEEEEehHhHHHHhCCCHHHHHH
Q 006973 521 RVCDGS-GEAWISIFNEEAERIIGCSADELNE 551 (623)
Q Consensus 521 ~i~D~T-g~~~~~~F~~~ae~llG~sA~el~~ 551 (623)
.+.|.. |. +..++..|++|||.+.+|+..
T Consensus 12 ~~~d~~~g~--I~~~N~aa~~l~G~~~~el~g 41 (114)
T 1ll8_A 12 FTVDAKTTE--ILVANDKACGLLGYSSQDLIG 41 (114)
T ss_dssp EEEETTTCB--EEEECTTHHHHHTCCTTTTTT
T ss_pred EEEECCCCe--EEEehHHHHHHhCCCHHHHcC
Confidence 456765 75 567899999999999999854
No 185
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=22.71 E-value=27 Score=35.25 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=15.6
Q ss_pred cccc--ccccceec---CCCCeeecCcCCCC
Q 006973 483 RACK--TCNKKVTD---ALGSGYWCEGCQKN 508 (623)
Q Consensus 483 ~aC~--~C~KKv~~---~~~~~~~C~kC~~~ 508 (623)
..|+ .|+..+.. .+-++|+|+.|++.
T Consensus 248 ~pC~~~~CG~~I~~~~~~gR~t~~CP~CQ~~ 278 (310)
T 3twl_A 248 KPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (310)
T ss_dssp CTTSCEETTEECEECCE------ECTTTCCC
T ss_pred CCCCCCCCCCeEEEEEECCcccEECCCCcCC
Confidence 4687 89976643 23578999999974
No 186
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.56 E-value=39 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=16.6
Q ss_pred eccccccccceec--------CCCC---eeecCcCCCC
Q 006973 482 YRACKTCNKKVTD--------ALGS---GYWCEGCQKN 508 (623)
Q Consensus 482 Y~aC~~C~KKv~~--------~~~~---~~~C~kC~~~ 508 (623)
...||.|+.+-.. .+++ -|.|.+|+..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 5678888764321 1122 3899999864
No 187
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=22.48 E-value=4e+02 Score=23.43 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=25.4
Q ss_pred EEEEEEechh-hhhhhhHhhhcCCCCcEEEEE-eEEeeeccc
Q 006973 348 TVTVSLWNEL-ATNVGQELLDNADKSPIVAIK-SLKVGDFQG 387 (623)
Q Consensus 348 ~I~vtLWg~~-A~~~~~~~~~~~~~~~Vv~i~-~~kV~~f~G 387 (623)
-++|++||+. |+.+.+. +..+.-|.+. .++...|..
T Consensus 53 w~~vv~wgk~lAe~~~~y----l~KG~~V~VeGrL~~r~~~d 90 (148)
T 3k7u_C 53 HHTIRCFGELFSAEVKQK----VKEGNVVCVNGRLRLSPQLE 90 (148)
T ss_dssp EEEEEEESHHHHHHHHHH----CCTTCEEEEEEEEEECCCSC
T ss_pred EEEEEEECcHHHHHHHhh----CCCCCEEEEEEEEEeeeeEC
Confidence 7999999997 9877554 4556666554 566667743
No 188
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.25 E-value=35 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=16.3
Q ss_pred ccccccccceecC---CCCeeecCcCCCCc
Q 006973 483 RACKTCNKKVTDA---LGSGYWCEGCQKND 509 (623)
Q Consensus 483 ~aC~~C~KKv~~~---~~~~~~C~kC~~~~ 509 (623)
.-||.|++.+..- +.-.|+|..|+.-.
T Consensus 62 a~CPdC~q~LevLkACGAvdYFC~~chgLi 91 (101)
T 2jne_A 62 ALCPDCHQPLQVLKACGAVDYFCQHGHGLI 91 (101)
T ss_dssp EECTTTCSBCEEEEETTEEEEEETTTTEEE
T ss_pred ccCcchhhHHHHHHHhcCcchhhccCCcee
Confidence 3477787776431 12358888887543
No 189
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=22.05 E-value=41 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.518 Sum_probs=18.7
Q ss_pred cccccccceec-----------CCCCeeecCcCCCCcc
Q 006973 484 ACKTCNKKVTD-----------ALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~KKv~~-----------~~~~~~~C~kC~~~~~ 510 (623)
.|+.|+|.... .+...|.|+.|++.+.
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 58888876542 1245699999998653
No 190
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=21.56 E-value=36 Score=30.78 Aligned_cols=31 Identities=16% Similarity=0.522 Sum_probs=22.5
Q ss_pred EeccccccccceecCCCCeeecC-------cCCCCcccc
Q 006973 481 WYRACKTCNKKVTDALGSGYWCE-------GCQKNDEEC 512 (623)
Q Consensus 481 ~Y~aC~~C~KKv~~~~~~~~~C~-------kC~~~~~~~ 512 (623)
....||.|+..+.-. ++.|.|. +|.-...+|
T Consensus 77 al~~CP~C~G~l~y~-~~~Y~C~G~isewtkC~~~t~~p 114 (160)
T 2riq_A 77 ALLPCEECSGQLVFK-SDAYYCTGDVTAWTKCMVKTQTP 114 (160)
T ss_dssp EECCCTTTCCCEEEE-TTEEEECCEEETTEECCCEESSC
T ss_pred CCCCCCCCCCEEEEe-CCeEEECCCCCCcccCcccCCCC
Confidence 378999999777765 5899995 376554444
No 191
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=21.31 E-value=90 Score=22.55 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=23.6
Q ss_pred EEEEeCCCcEEEEEehHhHHHHhCCCHHHHHH
Q 006973 520 ARVCDGSGEAWISIFNEEAERIIGCSADELNE 551 (623)
Q Consensus 520 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 551 (623)
+.+.|..|. +..++..+++++|.+++++..
T Consensus 5 i~~~d~~g~--i~~~N~~~~~l~g~~~~~~~g 34 (96)
T 3a0s_A 5 IITLSKDGR--ITEWNKKAEQLFGLKKENVLG 34 (96)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTT
T ss_pred EEEEcCCCC--EeehhHHHHHHhCCCHHHhcC
Confidence 346677765 557899999999999998754
No 192
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.24 E-value=42 Score=24.92 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=19.6
Q ss_pred ccccccccceec-----------CCCCeeecCcCCCCcc
Q 006973 483 RACKTCNKKVTD-----------ALGSGYWCEGCQKNDE 510 (623)
Q Consensus 483 ~aC~~C~KKv~~-----------~~~~~~~C~kC~~~~~ 510 (623)
..|+.|+|.... .+...|.|+.|++.+.
T Consensus 18 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp BCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEES
T ss_pred eECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhC
Confidence 358889887642 1245699999998763
No 193
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.22 E-value=40 Score=28.53 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=19.2
Q ss_pred cccccccceecCCC-----CeeecCcCCCCc
Q 006973 484 ACKTCNKKVTDALG-----SGYWCEGCQKND 509 (623)
Q Consensus 484 aC~~C~KKv~~~~~-----~~~~C~kC~~~~ 509 (623)
=||.|+--+....+ ..|.|.+|+-..
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 49999998866432 169999998644
No 194
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=21.03 E-value=3.4e+02 Score=29.93 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=58.8
Q ss_pred eccccCCC--CCCeEEEEEEEeeccccccccCCCcccEEEEEEEeCCCCeEEEEEechH----HHHHHhhcccCcEEEEe
Q 006973 176 PLVSLNPY--QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEA----ARKFYDRFQLGKVYYIS 249 (623)
Q Consensus 176 ~I~~L~p~--~~~w~I~~RV~~K~~~r~~~~~~g~g~~f~~~L~D~~G~~I~at~~~~~----~~kf~~~l~eG~vy~is 249 (623)
.+.+|+.. ....+|.|||.++ |. +. =++|.|.+| .|++++-.+. +-++...|..|+++.+.
T Consensus 14 ~~~~l~~~~~g~~V~l~GwV~~~---R~-------~~--Fi~LrD~~g-~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~ 80 (617)
T 4ah6_A 14 TCGELRSSHLGQEVTLCGWIQYR---RQ-------NT--FLVLRDFDG-LVQVIIPQDESAASVKKILCEAPVESVVQVS 80 (617)
T ss_dssp CGGGCCGGGTTCEEEEEEEECCC---CT-------TT--EEEEECSSC-EEEEECCCSSSSHHHHHHHHHCCSSCEEEEE
T ss_pred EHHHhHHHhCCCEEEEEEEeeee---cC-------eE--EEEEEeCCc-CEEEEEeCCcCcHHHHHHHhcCCCCCEEEEE
Confidence 34444432 2468899999763 31 12 267899999 8999987643 22344569999999999
Q ss_pred eeEEEecCCCcc--ccCCceEEEEccCcEEEEcc
Q 006973 250 RGTLRVANKQFK--TVQNDYEMNLNENSEVEEAV 281 (623)
Q Consensus 250 ~~~V~~a~~~~~--~~~~~yei~f~~~T~I~~~~ 281 (623)
+--++...+.-+ .....+||..+.-..+.++.
T Consensus 81 G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 81 GTVISRPAGQENPKMPTGEIEIKVKTAELLNACK 114 (617)
T ss_dssp EEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC
Confidence 655443222211 22457999888766666554
No 195
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=20.52 E-value=39 Score=23.40 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=18.8
Q ss_pred cccccccceec-----------CCCCeeecCcCCCCcc
Q 006973 484 ACKTCNKKVTD-----------ALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~KKv~~-----------~~~~~~~C~kC~~~~~ 510 (623)
.|+.|+|.... .+...|.|+.|++.+.
T Consensus 6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp BCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred cCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 58888876532 1245699999998653
No 196
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.49 E-value=82 Score=24.72 Aligned_cols=30 Identities=27% Similarity=0.226 Sum_probs=23.9
Q ss_pred EEEEeCCCcEEEEEehHhHHHHhCCCHHHHHH
Q 006973 520 ARVCDGSGEAWISIFNEEAERIIGCSADELNE 551 (623)
Q Consensus 520 ~~i~D~Tg~~~~~~F~~~ae~llG~sA~el~~ 551 (623)
+.+.|..|. +..++..|++++|.+.+++..
T Consensus 20 i~~~D~~g~--I~~~N~aa~~l~g~~~~~~~g 49 (115)
T 3b33_A 20 TLILDDGLA--IRYANPAAELLFSQSAKRIVE 49 (115)
T ss_dssp EEEECTTCB--EEEECHHHHHHTTSCHHHHTT
T ss_pred EEEECCCCc--EEEECHHHHHHhCCCHHHHhC
Confidence 456787775 567899999999999988743
No 197
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=20.48 E-value=38 Score=33.90 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=16.3
Q ss_pred ccccccccceec--------CCCCeeecCcCCCC
Q 006973 483 RACKTCNKKVTD--------ALGSGYWCEGCQKN 508 (623)
Q Consensus 483 ~aC~~C~KKv~~--------~~~~~~~C~kC~~~ 508 (623)
.+|| |+..+.. .+-+.|+|+.|++.
T Consensus 256 ~g~P-CG~~I~~~~~~~~~~~~R~t~~CP~CQ~~ 288 (295)
T 3vk8_A 256 KKDP-NGNKVIADKIIGSGKNKRTTYWAPAIQKL 288 (295)
T ss_dssp SBCT-TSCBCEEEECSCCTTCCCEEEECTTTCBC
T ss_pred CCCC-CCCcEEEEEecCCCCCCCccEECCCCCCC
Confidence 4566 7644422 23468999999974
No 198
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.47 E-value=35 Score=34.99 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=19.9
Q ss_pred ecccccccc---ce-ecCCCCeeecCcCCCCc
Q 006973 482 YRACKTCNK---KV-TDALGSGYWCEGCQKND 509 (623)
Q Consensus 482 Y~aC~~C~K---Kv-~~~~~~~~~C~kC~~~~ 509 (623)
-..||.|+. .+ .+...|.+.|..||-..
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl 52 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCc
Confidence 346999996 34 34446899999999654
No 199
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.42 E-value=45 Score=24.63 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=18.6
Q ss_pred cccccccceec-----------CCCCeeecCcCCCCcc
Q 006973 484 ACKTCNKKVTD-----------ALGSGYWCEGCQKNDE 510 (623)
Q Consensus 484 aC~~C~KKv~~-----------~~~~~~~C~kC~~~~~ 510 (623)
.|+.|+|.... .....|.|+.|++.+.
T Consensus 16 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp ECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred cCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 58888876532 1245799999998763
No 200
>1vib_A Neurotoxin B-IV; hydroxylation; HET: HYP; NMR {Cerebratulus lacteus} SCOP: g.2.2.1
Probab=20.12 E-value=8.1 Score=27.01 Aligned_cols=21 Identities=43% Similarity=0.852 Sum_probs=14.7
Q ss_pred Eecccc-ccccceecCCCCeeecCcCCCC
Q 006973 481 WYRACK-TCNKKVTDALGSGYWCEGCQKN 508 (623)
Q Consensus 481 ~Y~aC~-~C~KKv~~~~~~~~~C~kC~~~ 508 (623)
.||||. +|+|+... |-+|+-.
T Consensus 8 ~ypacenncrk~yd~-------ci~cqgk 29 (55)
T 1vib_A 8 AYPACENNCRKKYDL-------CIRCQGK 29 (55)
T ss_dssp TTTHHHHHHHHHHHH-------HCCTTGG
T ss_pred cChhhHhhHHHHhhH-------Hheecce
Confidence 599997 69988642 6666543
No 201
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.00 E-value=40 Score=23.89 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=10.3
Q ss_pred CCeeecCcCCCCc
Q 006973 497 GSGYWCEGCQKND 509 (623)
Q Consensus 497 ~~~~~C~kC~~~~ 509 (623)
.+.|.|++|+..+
T Consensus 10 ~~~~~CPrCn~~f 22 (49)
T 2e72_A 10 GGRKICPRCNAQF 22 (49)
T ss_dssp SSCCCCTTTCCCC
T ss_pred CCceeCCcccccc
Confidence 4678999998765
Done!